Thimo_3416 63abfa4b73b1806bc2b5159b2ad93f47 686 SUPERFAMILY SSF143011 1 81 1.96E-6 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_3416 63abfa4b73b1806bc2b5159b2ad93f47 686 Pfam PF13361 UvrD-like helicase C-terminal domain 602 672 1.5E-15 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Thimo_3416 63abfa4b73b1806bc2b5159b2ad93f47 686 Pfam PF13245 AAA domain 235 473 4.9E-10 T 14-10-2018 Thimo_3416 63abfa4b73b1806bc2b5159b2ad93f47 686 SUPERFAMILY SSF52540 221 677 5.46E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3416 63abfa4b73b1806bc2b5159b2ad93f47 686 Gene3D G3DSA:3.40.50.300 495 686 1.6E-32 T 14-10-2018 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SUPERFAMILY SSF47802 3 84 1.19E-18 T 14-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Pfam PF14791 DNA polymerase beta thumb 256 316 1.9E-15 T 14-10-2018 IPR029398 DNA polymerase beta, thumb domain Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Pfam PF14792 DNA polymerase beta palm 166 213 1.3E-5 T 14-10-2018 IPR028207 DNA polymerase beta, palm domain Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:1.10.150.110 1 88 4.3E-25 T 14-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:3.30.210.10 263 327 1.6E-20 T 14-10-2018 IPR037160 DNA polymerase, thumb domain superfamily Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00278 129 148 200.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00278 34 53 1600.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00278 94 113 2.7 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00278 54 73 43.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00483 3 316 1.2E-24 T 14-10-2018 IPR002054 DNA-directed DNA polymerase X GO:0003677|GO:0003887 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SUPERFAMILY SSF81301 158 316 5.82E-41 T 14-10-2018 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:1.10.150.20 89 153 3.3E-17 T 14-10-2018 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:3.30.460.10 158 262 2.7E-28 T 14-10-2018 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 241 249 1.7E-6 T 14-10-2018 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 256 263 1.7E-6 T 14-10-2018 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 61 78 1.7E-6 T 14-10-2018 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 PRINTS PR00870 DNA-polymerase family X pol beta-like signature 298 315 1.7E-6 T 14-10-2018 IPR002008 DNA polymerase family X, beta-like GO:0003677|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Gene3D G3DSA:3.20.20.140 329 578 9.9E-67 T 14-10-2018 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SUPERFAMILY SSF158702 55 147 3.14E-6 T 14-10-2018 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Pfam PF14520 Helix-hairpin-helix domain 94 149 7.3E-9 T 14-10-2018 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SMART SM00481 340 424 1.7E-13 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 PIRSF PIRSF005047 3 578 1.2E-224 T 14-10-2018 IPR022311 Uncharacterised conserved protein UCP005047, YshC KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 Pfam PF14716 Helix-hairpin-helix domain 5 75 1.6E-18 T 14-10-2018 IPR010996 DNA polymerase beta-like, N-terminal domain Thimo_1388 19ee46e77cea503da2f49c47a1ec1be7 578 SUPERFAMILY SSF89550 338 572 1.14E-48 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 SUPERFAMILY SSF50692 782 932 2.69E-32 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 17 68 1.0E-15 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 SUPERFAMILY SSF53706 15 743 1.96E-153 T 14-10-2018 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 Pfam PF01568 Molydopterin dinucleotide binding domain 789 879 1.2E-11 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 SMART SM00926 15 69 4.8E-18 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 Pfam PF00384 Molybdopterin oxidoreductase 72 368 4.7E-23 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 Pfam PF00384 Molybdopterin oxidoreductase 520 623 7.6E-10 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:2.40.40.20 762 934 1.8E-25 T 14-10-2018 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:2.20.25.90 10 73 3.2E-18 T 14-10-2018 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:3.40.50.740 74 162 1.1E-12 T 14-10-2018 Thimo_1580 6914b6c2f2ff2eb4de6a59c8e870c003 963 Gene3D G3DSA:3.40.50.740 474 651 1.6E-20 T 14-10-2018 Thimo_0704 3abb09834a6be4e4fc537bdcbbabb5c9 123 Pfam PF02033 Ribosome-binding factor A 6 110 9.6E-28 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Thimo_0704 3abb09834a6be4e4fc537bdcbbabb5c9 123 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 97 1.0E-15 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Thimo_0704 3abb09834a6be4e4fc537bdcbbabb5c9 123 SUPERFAMILY SSF89919 2 112 4.58E-29 T 14-10-2018 IPR023799 Ribosome-binding factor A domain superfamily Thimo_0704 3abb09834a6be4e4fc537bdcbbabb5c9 123 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 5 110 23.903 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Thimo_0704 3abb09834a6be4e4fc537bdcbbabb5c9 123 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 5 112 1.0E-26 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Thimo_0704 3abb09834a6be4e4fc537bdcbbabb5c9 123 ProSitePatterns PS01319 Ribosome-binding factor A signature. 76 97 - T 14-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 Thimo_0704 3abb09834a6be4e4fc537bdcbbabb5c9 123 Gene3D G3DSA:3.30.300.20 1 104 1.5E-30 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 Gene3D G3DSA:3.30.300.20 359 440 8.9E-22 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 360 438 4.4E-27 T 14-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 152 3.5E-17 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 182 348 6.1E-24 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 PIRSF PIRSF006485 1 446 5.2E-163 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 SUPERFAMILY SSF52540 4 162 1.82E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 Hamap MF_00195 GTPase Der [der]. 2 441 36.506 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 438 8.3E-164 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 Pfam PF01926 50S ribosome-binding GTPase 5 119 1.6E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 Pfam PF01926 50S ribosome-binding GTPase 184 302 5.2E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 SUPERFAMILY SSF52540 137 444 6.07E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 Gene3D G3DSA:3.40.50.300 178 355 1.2E-47 T 14-10-2018 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.7E-7 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 2.7E-7 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1887 6fbc35272fcda0de31b26293d57a9c2f 470 Gene3D G3DSA:3.40.50.300 2 160 4.7E-39 T 14-10-2018 Thimo_0171 922e09ca9f9f752e00977c4036b4dd26 272 Pfam PF13344 Haloacid dehalogenase-like hydrolase 9 108 3.5E-22 T 14-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA Thimo_0171 922e09ca9f9f752e00977c4036b4dd26 272 SUPERFAMILY SSF56784 8 258 7.2E-55 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0171 922e09ca9f9f752e00977c4036b4dd26 272 Pfam PF13242 HAD-hyrolase-like 183 255 9.6E-20 T 14-10-2018 Thimo_0171 922e09ca9f9f752e00977c4036b4dd26 272 Gene3D G3DSA:3.40.50.1000 85 184 5.7E-67 T 14-10-2018 IPR023214 HAD superfamily Thimo_0171 922e09ca9f9f752e00977c4036b4dd26 272 Gene3D G3DSA:3.40.50.1000 9 233 5.7E-67 T 14-10-2018 IPR023214 HAD superfamily Thimo_0171 922e09ca9f9f752e00977c4036b4dd26 272 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 9 233 8.8E-41 T 14-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA Thimo_2450 8685f8a9750aa2f06963bdeba7d72f4f 254 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 20 89 1.5E-18 T 14-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 Thimo_2450 8685f8a9750aa2f06963bdeba7d72f4f 254 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 109 230 1.6E-34 T 14-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 Thimo_2450 8685f8a9750aa2f06963bdeba7d72f4f 254 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 9 237 37.928 T 14-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 Thimo_2450 8685f8a9750aa2f06963bdeba7d72f4f 254 PIRSF PIRSF037208 2 247 9.7E-80 T 14-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 Thimo_2450 8685f8a9750aa2f06963bdeba7d72f4f 254 SUPERFAMILY SSF55729 87 233 8.33E-19 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 701 720 1.1E-48 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 730 749 1.1E-48 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 622 638 1.1E-48 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 753 771 1.1E-48 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 385 404 1.1E-48 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Gene3D G3DSA:3.30.230.10 616 803 4.7E-70 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Gene3D G3DSA:3.40.50.300 342 519 4.8E-64 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 SUPERFAMILY SSF88697 38 229 8.95E-22 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 TIGRFAM TIGR00763 lon: endopeptidase La 38 795 3.6E-286 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 37 229 3.7E-27 T 14-10-2018 IPR003111 Lon, substrate-binding domain Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 704 712 - T 14-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 381 517 1.6E-22 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Hamap MF_01973 Lon protease [lon]. 36 799 61.607 T 14-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Gene3D G3DSA:2.30.130.40 28 142 1.1E-15 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 SUPERFAMILY SSF54211 622 798 1.82E-47 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 SMART SM00382 377 522 5.4E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Gene3D G3DSA:1.20.58.1480 148 272 5.8E-33 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 PIRSF PIRSF001174 25 802 1.2E-283 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 SMART SM00464 35 230 2.7E-38 T 14-10-2018 IPR003111 Lon, substrate-binding domain Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Gene3D G3DSA:1.10.8.60 520 613 3.9E-26 T 14-10-2018 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 599 794 1.1E-74 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Thimo_2889 6e1a9b64a2d246619e18c407009a1040 803 SUPERFAMILY SSF52540 338 614 1.17E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:3.40.50.300 158 347 1.7E-74 T 14-10-2018 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 SMART SM01086 766 855 9.3E-37 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 334 5.0E-13 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 846 1.2E-25 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 SUPERFAMILY SSF52540 546 848 2.48E-81 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 8.8E-56 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 SUPERFAMILY SSF52540 159 545 1.86E-99 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 855 0.0 T 14-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 4.2E-11 T 14-10-2018 IPR004176 Clp, N-terminal Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 4.2E-13 T 14-10-2018 IPR004176 Clp, N-terminal Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 9.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 9.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 9.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 9.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:3.40.50.300 348 544 1.7E-70 T 14-10-2018 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:1.10.1780.10 1 148 7.6E-36 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:1.10.8.60 766 860 2.6E-28 T 14-10-2018 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 Gene3D G3DSA:3.40.50.300 550 764 4.1E-88 T 14-10-2018 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 SUPERFAMILY SSF81923 4 156 6.47E-41 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 SMART SM00382 597 748 2.4E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2255 a3ac373ae08200997013bc61ffddec55 864 SMART SM00382 198 343 1.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.5E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.5E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 Gene3D G3DSA:3.40.50.720 1 241 2.3E-52 T 14-10-2018 Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 Pfam PF00106 short chain dehydrogenase 5 195 3.2E-41 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 SUPERFAMILY SSF51735 1 226 2.0E-51 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3228 08b77043220aedb8fd56d0fa7865d130 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.5E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 Pfam PF00849 RNA pseudouridylate synthase 93 242 4.8E-34 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 SMART SM00363 19 76 6.1E-4 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 SUPERFAMILY SSF55174 19 69 1.38E-8 T 14-10-2018 Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 Pfam PF01479 S4 domain 19 65 5.4E-8 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 Gene3D G3DSA:3.10.290.10 9 73 1.3E-18 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 15 312 2.7E-93 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 SUPERFAMILY SSF55120 77 313 4.32E-77 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2186 60f644c491c1558ea97a3888901c25dd 336 Gene3D G3DSA:3.30.2350.10 85 315 1.2E-73 T 14-10-2018 Thimo_1180 c86905b9308a0076b26bfb11a1051cfe 274 SUPERFAMILY SSF56276 47 178 4.71E-24 T 14-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Thimo_1180 c86905b9308a0076b26bfb11a1051cfe 274 Pfam PF02675 S-adenosylmethionine decarboxylase 42 173 1.0E-31 T 14-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Thimo_1180 c86905b9308a0076b26bfb11a1051cfe 274 Gene3D G3DSA:3.60.90.10 107 189 4.1E-7 T 14-10-2018 Thimo_1180 c86905b9308a0076b26bfb11a1051cfe 274 PIRSF PIRSF001356 3 267 8.9E-142 T 14-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Thimo_1180 c86905b9308a0076b26bfb11a1051cfe 274 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 274 156.573 T 14-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Thimo_1180 c86905b9308a0076b26bfb11a1051cfe 274 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 7 265 4.7E-143 T 14-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Thimo_2588 44dedeb866708270df81a4dc156f68f1 248 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 163 240 8.7E-8 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2588 44dedeb866708270df81a4dc156f68f1 248 SUPERFAMILY SSF46626 67 150 6.8E-17 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2588 44dedeb866708270df81a4dc156f68f1 248 Pfam PF00034 Cytochrome c 74 149 1.7E-6 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2588 44dedeb866708270df81a4dc156f68f1 248 SUPERFAMILY SSF46626 161 242 8.17E-17 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2588 44dedeb866708270df81a4dc156f68f1 248 Gene3D G3DSA:1.10.760.10 70 150 1.1E-18 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2588 44dedeb866708270df81a4dc156f68f1 248 Gene3D G3DSA:1.10.760.10 161 242 5.3E-18 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 292 3.4E-151 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 3.7E-68 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 3.7E-68 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 3.7E-68 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 3.7E-68 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 3.7E-68 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 3.7E-68 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 60.913 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 Gene3D G3DSA:1.20.58.180 217 297 6.2E-35 T 14-10-2018 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 SUPERFAMILY SSF55681 10 292 2.65E-133 T 14-10-2018 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 300 1.3E-161 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3684 3186fe9af31443c643c9074cb4cfeaa8 302 Gene3D G3DSA:3.30.930.10 2 216 1.9E-109 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 183 206 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 373 391 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 118 141 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 318 340 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 157 182 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 275 294 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 25 43 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 405 423 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 77 97 5.1E-88 T 14-10-2018 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 PIRSF PIRSF004557 2 443 3.3E-125 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 ProSitePatterns PS00755 Protein secY signature 1. 78 97 - T 14-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 22 432 4.8E-130 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 SUPERFAMILY SSF103491 3 427 4.18E-131 T 14-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 Pfam PF00344 SecY translocase 78 420 2.3E-115 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 Hamap MF_01465 Protein translocase subunit SecY [secY]. 12 436 29.152 T 14-10-2018 IPR026593 Protein translocase subunit SecY Thimo_2840 d180ce511238944331e0fd70b5d52157 450 ProSitePatterns PS00756 Protein secY signature 2. 176 193 - T 14-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2840 d180ce511238944331e0fd70b5d52157 450 Gene3D G3DSA:1.10.3370.10 10 432 2.0E-160 T 14-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 5 619 9.3E-156 T 14-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:3.40.50.300 125 363 6.6E-63 T 14-10-2018 Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 SUPERFAMILY SSF52540 295 619 1.0E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 617 47.186 T 14-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:3.40.50.300 489 608 5.0E-23 T 14-10-2018 Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:3.40.50.300 385 488 7.6E-15 T 14-10-2018 Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 Pfam PF13604 AAA domain 173 328 2.5E-30 T 14-10-2018 Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 Gene3D G3DSA:1.10.10.1020 1 124 2.4E-14 T 14-10-2018 Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 SUPERFAMILY SSF52540 11 380 1.05E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2315 2b528817a75bcd41963f5144dcc25f01 631 Pfam PF13538 UvrD-like helicase C-terminal domain 548 594 2.1E-14 T 14-10-2018 IPR027785 UvrD-like helicase C-terminal domain Thimo_2414 1470b86611f845b673656cdecce2afe4 157 Pfam PF01899 Na+/H+ ion antiporter subunit 9 157 1.8E-44 T 14-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Thimo_2414 1470b86611f845b673656cdecce2afe4 157 PIRSF PIRSF019239 1 157 2.0E-40 T 14-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Thimo_3675 60f59f80b4767eee722affac0081a1af 160 SUPERFAMILY SSF75217 6 155 1.37E-42 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Thimo_3675 60f59f80b4767eee722affac0081a1af 160 Pfam PF00588 SpoU rRNA Methylase family 7 145 2.7E-30 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Thimo_3675 60f59f80b4767eee722affac0081a1af 160 Gene3D G3DSA:3.40.1280.10 2 158 1.1E-61 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_3675 60f59f80b4767eee722affac0081a1af 160 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 5 154 32.628 T 14-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 Thimo_3675 60f59f80b4767eee722affac0081a1af 160 PIRSF PIRSF029256 4 156 2.9E-61 T 14-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 300 415 5.2E-34 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF00698 Acyl transferase domain 593 814 1.8E-15 T 14-10-2018 IPR014043 Acyl transferase Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.10.129.110 970 1211 2.5E-10 T 14-10-2018 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 1345 1406 3.6E-10 T 14-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 1252 1339 1.0E-5 T 14-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.30.70.3290 832 853 8.9E-38 T 14-10-2018 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF56214 1250 1339 1.7E-9 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF52151 554 823 3.92E-30 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SMART SM00825 Beta-ketoacyl synthase 11 466 8.5E-100 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 558 828 4.8E-10 T 14-10-2018 IPR020801 Polyketide synthase, acyl transferase domain Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF53901 5 460 5.46E-75 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 9 292 1.7E-59 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.90.470.20 1241 1343 3.9E-10 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 SUPERFAMILY SSF56214 1344 1414 3.31E-14 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.90.470.20 1345 1428 2.9E-12 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 205 221 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Pfam PF14765 Polyketide synthase dehydratase 990 1215 7.9E-11 T 14-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Thimo_1437 d2355b2bfb3ff6b2fffe3dcff532464c 1460 Gene3D G3DSA:3.40.366.10 589 831 8.9E-38 T 14-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 SUPERFAMILY SSF103190 212 319 5.41E-23 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 520 2.2E-43 T 14-10-2018 IPR000160 GGDEF domain Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 SUPERFAMILY SSF55073 370 524 1.94E-46 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 361 525 5.8E-47 T 14-10-2018 IPR000160 GGDEF domain Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 Gene3D G3DSA:3.30.70.270 359 530 1.6E-54 T 14-10-2018 Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 SUPERFAMILY SSF103190 35 204 3.4E-43 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 Gene3D G3DSA:3.30.450.20 211 284 8.2E-13 T 14-10-2018 Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 Pfam PF02743 Cache domain 35 233 6.3E-12 T 14-10-2018 IPR033479 Double Cache domain 1 Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 SMART SM00267 354 525 1.3E-54 T 14-10-2018 IPR000160 GGDEF domain Thimo_2693 89f59ce27710eb26e566a2ce80b9aceb 531 Gene3D G3DSA:3.30.450.20 72 206 5.1E-37 T 14-10-2018 Thimo_3104 86a62ce29fc4976a12f6d2ff97347401 303 Gene3D G3DSA:3.30.1700.10 128 301 3.2E-66 T 14-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Thimo_3104 86a62ce29fc4976a12f6d2ff97347401 303 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 296 7.6E-119 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Thimo_3104 86a62ce29fc4976a12f6d2ff97347401 303 Gene3D G3DSA:3.30.230.20 1 127 3.9E-49 T 14-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Thimo_3104 86a62ce29fc4976a12f6d2ff97347401 303 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 46.298 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Thimo_3104 86a62ce29fc4976a12f6d2ff97347401 303 SUPERFAMILY SSF54211 133 277 1.9E-51 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_3104 86a62ce29fc4976a12f6d2ff97347401 303 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 1.1E-106 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Thimo_3104 86a62ce29fc4976a12f6d2ff97347401 303 SUPERFAMILY SSF54211 3 124 3.26E-42 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2909 2db0b9b30f2c7611cfebb8b986663389 216 SUPERFAMILY SSF55729 4 166 7.97E-16 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_2909 2db0b9b30f2c7611cfebb8b986663389 216 Gene3D G3DSA:3.40.630.30 8 195 1.6E-9 T 14-10-2018 Thimo_2909 2db0b9b30f2c7611cfebb8b986663389 216 Pfam PF00583 Acetyltransferase (GNAT) family 43 160 6.3E-5 T 14-10-2018 IPR000182 GNAT domain Thimo_2546 3440a0459276841fd632f013e23388b5 453 SUPERFAMILY SSF53738 2 180 8.63E-49 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 253 4.9E-18 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Gene3D G3DSA:3.40.120.10 2 153 1.5E-47 T 14-10-2018 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Gene3D G3DSA:3.40.120.10 173 361 8.4E-63 T 14-10-2018 Thimo_2546 3440a0459276841fd632f013e23388b5 453 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 SUPERFAMILY SSF55957 357 446 2.09E-19 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 SUPERFAMILY SSF53738 257 364 2.75E-29 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 SUPERFAMILY SSF53738 155 255 1.65E-27 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 442 6.7E-185 T 14-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Gene3D G3DSA:3.40.120.10 256 338 8.4E-63 T 14-10-2018 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 444 46.039 T 14-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 366 2.8E-30 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 441 2.3E-13 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 5.9E-15 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 5.9E-15 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 5.9E-15 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 7.8E-44 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2546 3440a0459276841fd632f013e23388b5 453 Gene3D G3DSA:3.30.310.50 369 448 8.9E-22 T 14-10-2018 Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 SUPERFAMILY SSF51735 2 276 9.14E-61 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 Pfam PF00106 short chain dehydrogenase 6 190 1.9E-42 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 3.9E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 3.9E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 3.9E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 Gene3D G3DSA:3.40.50.720 5 261 9.3E-64 T 14-10-2018 Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.6E-19 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.6E-19 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.6E-19 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-19 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.6E-19 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0158 feb6e9be4093d8697f29f0885e9cec83 283 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Thimo_0860 c8039cbd7d5ff0898a057d82999ce5eb 258 Pfam PF04116 Fatty acid hydroxylase superfamily 83 219 1.4E-30 T 14-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SUPERFAMILY SSF53706 220 673 1.93E-79 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.40.50.740 284 356 2.4E-12 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SUPERFAMILY SSF54862 83 217 1.09E-35 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.40.50.740 462 681 5.5E-21 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SMART SM00929 90 130 7.6E-20 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SUPERFAMILY SSF54292 5 81 9.53E-18 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 152 162 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 90 125 8.8E-17 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 7 649 2.0E-183 T 14-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:2.40.40.20 715 797 1.6E-7 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 83 4.5E-18 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 105 117 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 34 51 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.40.228.10 357 419 2.4E-12 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.10.20.740 4 129 7.9E-40 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Pfam PF01568 Molydopterin dinucleotide binding domain 730 782 9.4E-9 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 SUPERFAMILY SSF50692 729 782 2.28E-9 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Gene3D G3DSA:3.30.70.20 132 211 1.1E-7 T 14-10-2018 Thimo_0591 5a2e9cc6e33e5e7c7982ffa9b5b063fb 798 Pfam PF00384 Molybdopterin oxidoreductase 279 650 1.5E-30 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2544 c5fdc4a6490146e166c56e268226f020 143 SUPERFAMILY SSF55961 2 142 6.14E-30 T 14-10-2018 Thimo_2544 c5fdc4a6490146e166c56e268226f020 143 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 134 8.4E-29 T 14-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 Thimo_2544 c5fdc4a6490146e166c56e268226f020 143 Gene3D G3DSA:3.30.530.20 3 143 4.8E-36 T 14-10-2018 IPR023393 START-like domain superfamily Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.40.630.30 25 256 7.2E-16 T 14-10-2018 Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.30.1490.20 343 408 1.2E-13 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 TIGRFAM TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103 34 576 1.4E-271 T 14-10-2018 IPR017534 GNAT-acetyltransferase Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.30.470.20 321 422 1.2E-13 T 14-10-2018 Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 SUPERFAMILY SSF55729 79 247 8.72E-19 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 Gene3D G3DSA:3.30.470.20 486 573 4.3E-10 T 14-10-2018 Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 SUPERFAMILY SSF56059 328 573 7.92E-30 T 14-10-2018 Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 Pfam PF00583 Acetyltransferase (GNAT) family 147 243 7.3E-9 T 14-10-2018 IPR000182 GNAT domain Thimo_1802 e0218c4e47464a69aab76548fa668ed0 582 Pfam PF08443 RimK-like ATP-grasp domain 327 429 6.3E-9 T 14-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 Pfam PF00570 HRDC domain 632 699 2.2E-15 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 Pfam PF05970 PIF1-like helicase 19 213 7.2E-28 T 14-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 Pfam PF14493 Helix-turn-helix domain 728 815 1.7E-20 T 14-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 Gene3D G3DSA:1.10.150.80 624 711 2.8E-18 T 14-10-2018 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 SUPERFAMILY SSF47819 627 711 8.5E-15 T 14-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 Gene3D G3DSA:3.40.50.300 7 179 6.9E-31 T 14-10-2018 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 SUPERFAMILY SSF52540 135 432 4.07E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 SMART SM00341 626 709 1.8E-11 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 Gene3D G3DSA:3.40.50.300 238 422 2.1E-6 T 14-10-2018 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 Pfam PF02689 Helicase 359 435 1.9E-5 T 14-10-2018 IPR003840 DNA helicase GO:0004386|GO:0005524 Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 SUPERFAMILY SSF52540 13 240 5.87E-25 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3227 d5e3c58724c3f71647db58e3705be677 823 SMART SM00382 20 314 5.5E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1110 1b8f10d08664a1460331edd138857f07 503 SUPERFAMILY SSF53649 18 496 3.93E-98 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Thimo_1110 1b8f10d08664a1460331edd138857f07 503 SMART SM00098 29 497 2.8E-39 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Thimo_1110 1b8f10d08664a1460331edd138857f07 503 Pfam PF00245 Alkaline phosphatase 29 495 1.2E-66 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Thimo_1110 1b8f10d08664a1460331edd138857f07 503 PRINTS PR00113 Alkaline phosphatase signature 253 282 4.9E-11 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Thimo_1110 1b8f10d08664a1460331edd138857f07 503 PRINTS PR00113 Alkaline phosphatase signature 130 150 4.9E-11 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Thimo_1110 1b8f10d08664a1460331edd138857f07 503 PRINTS PR00113 Alkaline phosphatase signature 28 48 4.9E-11 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Thimo_2040 0eb58ee8c8ff22a69da50f733b6db747 606 Gene3D G3DSA:3.40.50.12780 329 470 3.7E-36 T 14-10-2018 Thimo_2040 0eb58ee8c8ff22a69da50f733b6db747 606 Gene3D G3DSA:3.40.50.12780 10 314 1.2E-58 T 14-10-2018 Thimo_2040 0eb58ee8c8ff22a69da50f733b6db747 606 PRINTS PR00154 AMP-binding signature 199 207 8.3E-5 T 14-10-2018 IPR020459 AMP-binding Thimo_2040 0eb58ee8c8ff22a69da50f733b6db747 606 PRINTS PR00154 AMP-binding signature 187 198 8.3E-5 T 14-10-2018 IPR020459 AMP-binding Thimo_2040 0eb58ee8c8ff22a69da50f733b6db747 606 Pfam PF00501 AMP-binding enzyme 23 474 1.4E-96 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Thimo_2040 0eb58ee8c8ff22a69da50f733b6db747 606 SUPERFAMILY SSF56801 11 604 3.01E-125 T 14-10-2018 Thimo_2040 0eb58ee8c8ff22a69da50f733b6db747 606 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 14-10-2018 IPR020845 AMP-binding, conserved site Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 13 581 1.1E-231 T 14-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 Gene3D G3DSA:1.20.1560.10 1 331 6.6E-81 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 SMART SM00382 369 556 1.3E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 Pfam PF00664 ABC transporter transmembrane region 30 296 1.8E-51 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 Pfam PF00005 ABC transporter 360 510 4.6E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 SUPERFAMILY SSF90123 15 326 4.32E-74 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 Gene3D G3DSA:3.40.50.300 332 582 1.2E-89 T 14-10-2018 Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 SUPERFAMILY SSF52540 335 581 4.35E-92 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3378 45b7b65625a2112f5774bb30e0bc2832 588 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0326 b19dc64bc7c6cf69dd63d9b84a4faeae 332 Pfam PF01867 CRISPR associated protein Cas1 3 287 4.3E-64 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Thimo_0326 b19dc64bc7c6cf69dd63d9b84a4faeae 332 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 3 288 3.2E-54 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Thimo_0326 b19dc64bc7c6cf69dd63d9b84a4faeae 332 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 1 323 20.446 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Thimo_0326 b19dc64bc7c6cf69dd63d9b84a4faeae 332 Gene3D G3DSA:1.20.120.920 84 330 6.4E-54 T 14-10-2018 Thimo_0326 b19dc64bc7c6cf69dd63d9b84a4faeae 332 Gene3D G3DSA:3.100.10.20 1 75 3.0E-7 T 14-10-2018 Thimo_0436 18a0e84918c4497eb1e38c1d680d7548 642 Pfam PF13624 SurA N-terminal domain 1 162 1.4E-51 T 14-10-2018 Thimo_0436 18a0e84918c4497eb1e38c1d680d7548 642 SUPERFAMILY SSF54534 263 370 5.36E-26 T 14-10-2018 Thimo_0436 18a0e84918c4497eb1e38c1d680d7548 642 SUPERFAMILY SSF109998 41 240 8.24E-29 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily Thimo_0436 18a0e84918c4497eb1e38c1d680d7548 642 Gene3D G3DSA:3.10.50.40 264 392 1.4E-28 T 14-10-2018 Thimo_0436 18a0e84918c4497eb1e38c1d680d7548 642 Gene3D G3DSA:1.10.4030.30 39 199 4.0E-18 T 14-10-2018 Thimo_0436 18a0e84918c4497eb1e38c1d680d7548 642 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 306 327 - T 14-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Thimo_0436 18a0e84918c4497eb1e38c1d680d7548 642 Pfam PF00639 PPIC-type PPIASE domain 273 366 4.1E-22 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Thimo_1318 ed4694b0649cc0e196e58c0ec94b6458 242 Pfam PF00929 Exonuclease 4 166 1.2E-37 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_1318 ed4694b0649cc0e196e58c0ec94b6458 242 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 234 3.8E-94 T 14-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1318 ed4694b0649cc0e196e58c0ec94b6458 242 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 4 217 5.4E-65 T 14-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1318 ed4694b0649cc0e196e58c0ec94b6458 242 SMART SM00479 2 175 9.8E-49 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_1318 ed4694b0649cc0e196e58c0ec94b6458 242 Gene3D G3DSA:3.30.420.10 1 179 4.3E-57 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_1318 ed4694b0649cc0e196e58c0ec94b6458 242 SUPERFAMILY SSF53098 1 176 5.7E-55 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2076 e4b9b7f42365a9c84021ab7c9b12383b 363 Pfam PF02424 ApbE family 58 340 4.9E-84 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Thimo_2076 e4b9b7f42365a9c84021ab7c9b12383b 363 PIRSF PIRSF006268 24 361 5.8E-90 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Thimo_2076 e4b9b7f42365a9c84021ab7c9b12383b 363 SUPERFAMILY SSF143631 50 361 8.63E-98 T 14-10-2018 IPR003374 ApbE-like superfamily Thimo_2076 e4b9b7f42365a9c84021ab7c9b12383b 363 Gene3D G3DSA:3.10.520.20 44 363 6.4E-111 T 14-10-2018 Thimo_1846 fea56b3ac25eede4c694039de0e835c1 201 Gene3D G3DSA:3.30.230.40 1 95 1.5E-36 T 14-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Thimo_1846 fea56b3ac25eede4c694039de0e835c1 201 SUPERFAMILY SSF54211 94 184 1.52E-35 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1846 fea56b3ac25eede4c694039de0e835c1 201 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 67 80 - T 14-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Thimo_1846 fea56b3ac25eede4c694039de0e835c1 201 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 8 201 43.072 T 14-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Thimo_1846 fea56b3ac25eede4c694039de0e835c1 201 Gene3D G3DSA:3.30.230.40 96 201 8.6E-40 T 14-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Thimo_1846 fea56b3ac25eede4c694039de0e835c1 201 SUPERFAMILY SSF54211 8 91 4.55E-32 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1846 fea56b3ac25eede4c694039de0e835c1 201 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 162 174 - T 14-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Thimo_1846 fea56b3ac25eede4c694039de0e835c1 201 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 37 180 5.2E-64 T 14-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 287 65.106 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 Gene3D G3DSA:3.20.20.70 1 291 2.8E-109 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 287 1.2E-105 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 14-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 14-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 2.0E-102 T 14-10-2018 IPR002220 DapA-like GO:0016829 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 9.0E-32 T 14-10-2018 IPR002220 DapA-like GO:0016829 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 9.0E-32 T 14-10-2018 IPR002220 DapA-like GO:0016829 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 9.0E-32 T 14-10-2018 IPR002220 DapA-like GO:0016829 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 9.0E-32 T 14-10-2018 IPR002220 DapA-like GO:0016829 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 PIRSF PIRSF001365 1 290 9.0E-91 T 14-10-2018 IPR002220 DapA-like GO:0016829 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 SMART SM01130 1 289 6.5E-142 T 14-10-2018 IPR002220 DapA-like GO:0016829 Thimo_2965 171496e585096cf2cc03dad3e3ad4f76 291 SUPERFAMILY SSF51569 1 290 1.99E-102 T 14-10-2018 Thimo_2340 3cc54430ccd6c7f8aed714a94f19dbac 856 SUPERFAMILY SSF56059 34 467 2.47E-26 T 14-10-2018 Thimo_2340 3cc54430ccd6c7f8aed714a94f19dbac 856 Gene3D G3DSA:3.40.50.11290 231 327 1.2E-40 T 14-10-2018 Thimo_2340 3cc54430ccd6c7f8aed714a94f19dbac 856 Pfam PF14403 Circularly permuted ATP-grasp type 2 92 468 1.9E-151 T 14-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 Thimo_2340 3cc54430ccd6c7f8aed714a94f19dbac 856 Gene3D G3DSA:3.30.1490.270 364 423 1.3E-6 T 14-10-2018 Thimo_2340 3cc54430ccd6c7f8aed714a94f19dbac 856 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 518 838 1.9E-74 T 14-10-2018 IPR007296 Domain of unknown function DUF403 Thimo_3365 4263923d254a4e43c6067bbb4370c2ce 213 SUPERFAMILY SSF69721 103 207 3.01E-25 T 14-10-2018 IPR025526 DsrC-like domain superfamily Thimo_3365 4263923d254a4e43c6067bbb4370c2ce 213 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 106 207 3.5E-25 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_3365 4263923d254a4e43c6067bbb4370c2ce 213 Gene3D G3DSA:1.10.10.370 142 211 5.0E-18 T 14-10-2018 Thimo_3365 4263923d254a4e43c6067bbb4370c2ce 213 Gene3D G3DSA:3.30.1420.10 100 141 5.0E-10 T 14-10-2018 Thimo_3365 4263923d254a4e43c6067bbb4370c2ce 213 Pfam PF04358 DsrC like protein 107 210 3.6E-31 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0426 4c1b0938f795136f4726c1a75c9cb6d6 461 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 461 1.6E-188 T 14-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 Thimo_0426 4c1b0938f795136f4726c1a75c9cb6d6 461 SMART SM00729 53 276 2.0E-48 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0426 4c1b0938f795136f4726c1a75c9cb6d6 461 Pfam PF06969 HemN C-terminal domain 367 435 3.3E-11 T 14-10-2018 IPR010723 HemN, C-terminal Thimo_0426 4c1b0938f795136f4726c1a75c9cb6d6 461 Gene3D G3DSA:3.80.30.20 1 367 2.5E-122 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0426 4c1b0938f795136f4726c1a75c9cb6d6 461 Gene3D G3DSA:1.10.10.920 368 461 5.6E-33 T 14-10-2018 Thimo_0426 4c1b0938f795136f4726c1a75c9cb6d6 461 Pfam PF04055 Radical SAM superfamily 59 232 1.6E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0426 4c1b0938f795136f4726c1a75c9cb6d6 461 PIRSF PIRSF000167 3 457 1.1E-167 T 14-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 Thimo_0426 4c1b0938f795136f4726c1a75c9cb6d6 461 SUPERFAMILY SSF102114 5 448 1.02E-136 T 14-10-2018 Thimo_3029 b3a0f67e8032f1956fa737d0eed62026 258 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 9 252 2.3E-73 T 14-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 Thimo_3029 b3a0f67e8032f1956fa737d0eed62026 258 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 3 254 39.102 T 14-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 Thimo_3029 b3a0f67e8032f1956fa737d0eed62026 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 9.1E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3029 b3a0f67e8032f1956fa737d0eed62026 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 77 90 9.1E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3029 b3a0f67e8032f1956fa737d0eed62026 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 199 213 9.1E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3029 b3a0f67e8032f1956fa737d0eed62026 258 Gene3D G3DSA:3.40.50.1820 2 257 4.4E-61 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3029 b3a0f67e8032f1956fa737d0eed62026 258 SUPERFAMILY SSF53474 2 255 5.23E-47 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3029 b3a0f67e8032f1956fa737d0eed62026 258 Pfam PF12697 Alpha/beta hydrolase family 14 243 5.7E-18 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1560 c67346e89d52f930a38cf12a8b983236 69 SUPERFAMILY SSF50182 19 68 9.81E-18 T 14-10-2018 IPR010920 LSM domain superfamily Thimo_1560 c67346e89d52f930a38cf12a8b983236 69 Pfam PF06004 Bacterial protein of unknown function (DUF903) 20 68 4.0E-23 T 14-10-2018 IPR010305 Protein of unknown function DUF903 Thimo_1560 c67346e89d52f930a38cf12a8b983236 69 Gene3D G3DSA:2.30.30.100 16 69 1.3E-21 T 14-10-2018 Thimo_2883 1741067262b54585ba74c132b9efeeaa 928 Pfam PF13676 TIR domain 7 116 1.5E-14 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_2883 1741067262b54585ba74c132b9efeeaa 928 SUPERFAMILY SSF52200 7 136 1.57E-13 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_2883 1741067262b54585ba74c132b9efeeaa 928 SUPERFAMILY SSF56436 674 921 2.0E-55 T 14-10-2018 IPR016187 C-type lectin fold Thimo_2883 1741067262b54585ba74c132b9efeeaa 928 Gene3D G3DSA:3.40.50.10140 6 126 1.2E-14 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_2883 1741067262b54585ba74c132b9efeeaa 928 Pfam PF03781 Sulfatase-modifying factor enzyme 1 674 919 1.5E-52 T 14-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Thimo_2883 1741067262b54585ba74c132b9efeeaa 928 SUPERFAMILY SSF52540 167 417 4.37E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2883 1741067262b54585ba74c132b9efeeaa 928 Gene3D G3DSA:3.90.1580.10 670 925 1.1E-57 T 14-10-2018 Thimo_2623 19d1a83119d953ddca93827f0424a9b6 583 Gene3D G3DSA:1.25.40.10 284 499 8.8E-12 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2623 19d1a83119d953ddca93827f0424a9b6 583 Pfam PF13676 TIR domain 16 126 1.5E-8 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_2623 19d1a83119d953ddca93827f0424a9b6 583 Gene3D G3DSA:3.40.50.10140 1 140 9.1E-17 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_2623 19d1a83119d953ddca93827f0424a9b6 583 Gene3D G3DSA:1.25.40.10 500 579 5.8E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2623 19d1a83119d953ddca93827f0424a9b6 583 SUPERFAMILY SSF52200 4 126 2.22E-9 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_2623 19d1a83119d953ddca93827f0424a9b6 583 SUPERFAMILY SSF48452 289 556 3.0E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0582 272ee98572838d3cb58892760415e54a 253 Pfam PF00121 Triosephosphate isomerase 5 246 2.4E-88 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_0582 272ee98572838d3cb58892760415e54a 253 SUPERFAMILY SSF51351 1 248 6.02E-95 T 14-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_0582 272ee98572838d3cb58892760415e54a 253 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 59.599 T 14-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_0582 272ee98572838d3cb58892760415e54a 253 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 14-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_0582 272ee98572838d3cb58892760415e54a 253 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 239 1.5E-69 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_0582 272ee98572838d3cb58892760415e54a 253 Gene3D G3DSA:3.20.20.70 1 252 4.5E-99 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_2500 b1b432defe672fb461a61184724b75f6 703 Gene3D G3DSA:2.170.130.10 55 163 2.4E-26 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Thimo_2500 b1b432defe672fb461a61184724b75f6 703 SUPERFAMILY SSF56935 33 701 5.49E-89 T 14-10-2018 Thimo_2500 b1b432defe672fb461a61184724b75f6 703 Gene3D G3DSA:2.40.170.20 170 701 5.6E-67 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Thimo_2500 b1b432defe672fb461a61184724b75f6 703 Pfam PF00593 TonB dependent receptor 202 699 2.4E-48 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Thimo_2500 b1b432defe672fb461a61184724b75f6 703 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 157 8.9E-22 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF13426 PAS domain 675 774 2.5E-8 T 14-10-2018 IPR000014 PAS domain Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF55785 400 512 5.48E-32 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.30.450.20 385 507 3.1E-37 T 14-10-2018 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.30.450.20 512 652 1.4E-12 T 14-10-2018 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 907 1026 7.4E-29 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF52172 1192 1315 1.57E-36 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00086 600 639 2.2 T 14-10-2018 IPR001610 PAC motif Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00086 465 505 1.2 T 14-10-2018 IPR001610 PAC motif Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00086 734 776 400.0 T 14-10-2018 IPR001610 PAC motif Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF55874 850 1026 1.44E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF47384 782 862 6.87E-21 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.40.50.2300 1186 1314 1.7E-38 T 14-10-2018 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF08448 PAS fold 524 640 4.2E-6 T 14-10-2018 IPR013656 PAS fold-4 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 675 783 2.9E-14 T 14-10-2018 IPR000014 PAS domain Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 386 512 2.5E-32 T 14-10-2018 IPR000014 PAS domain Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 988 1006 8.8E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1012 1025 8.8E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 971 981 8.8E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 953 967 8.8E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00388 796 861 3.4E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00387 907 1028 4.2E-39 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00091 389 455 2.8E-15 T 14-10-2018 IPR000014 PAS domain Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00091 517 587 64.0 T 14-10-2018 IPR000014 PAS domain Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00091 661 728 2.3E-4 T 14-10-2018 IPR000014 PAS domain Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF55785 676 783 2.09E-18 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF47226 1293 1436 9.42E-21 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF00989 PAS fold 390 502 2.4E-18 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.30.565.10 860 1030 9.7E-48 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF00072 Response regulator receiver domain 1194 1307 1.1E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF01627 Hpt domain 1362 1444 2.3E-11 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:1.10.287.130 772 859 1.5E-25 T 14-10-2018 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00073 1350 1445 1.4E-4 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:3.30.450.20 653 771 1.9E-18 T 14-10-2018 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SMART SM00448 1192 1310 1.7E-33 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 797 861 3.2E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 Gene3D G3DSA:1.20.120.160 1332 1448 6.8E-18 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 Thimo_3402 b9be97b5fde1ab35f8919e50bd775134 1469 SUPERFAMILY SSF55785 502 637 1.38E-12 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_1623 44d8e201f3a5905ae8fec5cc5d85e1c8 279 Hamap MF_00258 Glutamate racemase [murI]. 10 262 35.412 T 14-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Thimo_1623 44d8e201f3a5905ae8fec5cc5d85e1c8 279 Gene3D G3DSA:3.40.50.1860 11 251 4.8E-86 T 14-10-2018 Thimo_1623 44d8e201f3a5905ae8fec5cc5d85e1c8 279 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 185 195 - T 14-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Thimo_1623 44d8e201f3a5905ae8fec5cc5d85e1c8 279 TIGRFAM TIGR00067 glut_race: glutamate racemase 12 255 3.4E-63 T 14-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Thimo_1623 44d8e201f3a5905ae8fec5cc5d85e1c8 279 SUPERFAMILY SSF53681 114 263 7.59E-35 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Thimo_1623 44d8e201f3a5905ae8fec5cc5d85e1c8 279 Gene3D G3DSA:3.40.50.1860 101 212 4.8E-86 T 14-10-2018 Thimo_1623 44d8e201f3a5905ae8fec5cc5d85e1c8 279 SUPERFAMILY SSF53681 11 112 9.48E-32 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Thimo_1623 44d8e201f3a5905ae8fec5cc5d85e1c8 279 Pfam PF01177 Asp/Glu/Hydantoin racemase 12 220 6.8E-34 T 14-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Thimo_1146 1105e2405ef0f7f72181ecc5bf40cc6f 264 Gene3D G3DSA:3.40.630.30 29 238 1.0E-35 T 14-10-2018 Thimo_1146 1105e2405ef0f7f72181ecc5bf40cc6f 264 Pfam PF13444 Acetyltransferase (GNAT) domain 39 138 8.7E-12 T 14-10-2018 Thimo_1146 1105e2405ef0f7f72181ecc5bf40cc6f 264 SUPERFAMILY SSF55729 32 224 7.04E-22 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_1146 1105e2405ef0f7f72181ecc5bf40cc6f 264 TIGRFAM TIGR03694 exosort_acyl: N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated 20 239 3.3E-48 T 14-10-2018 IPR022484 PEP-CTERM/exosortase system-associated acyltransferase, predicted Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 Gene3D G3DSA:1.20.120.160 707 823 1.0E-16 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 SMART SM00387 278 396 3.8E-40 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 Pfam PF00072 Response regulator receiver domain 563 678 6.2E-20 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 SMART SM00448 561 678 9.3E-32 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 Pfam PF00512 His Kinase A (phospho-acceptor) domain 166 231 4.7E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 349 4.3E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 PRINTS PR00344 Bacterial sensor protein C-terminal signature 321 335 4.3E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 374 4.3E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 393 4.3E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 278 394 3.6E-29 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 SUPERFAMILY SSF47226 711 822 1.57E-16 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 SUPERFAMILY SSF47384 149 232 1.71E-21 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 Gene3D G3DSA:3.30.565.10 230 402 1.9E-54 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 SMART SM00388 166 231 2.0E-22 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 Gene3D G3DSA:3.40.50.2300 560 701 8.9E-34 T 14-10-2018 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 SUPERFAMILY SSF52172 560 688 1.85E-34 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 Pfam PF01627 Hpt domain 735 811 2.5E-7 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 Gene3D G3DSA:1.10.287.130 146 229 4.4E-26 T 14-10-2018 Thimo_1691 48c9fc27fc3171b7daaf709dd0b28330 839 SUPERFAMILY SSF55874 220 398 2.1E-47 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2390 ef2a406897de12f71e16eef8d760e003 386 Pfam PF01145 SPFH domain / Band 7 family 81 253 4.8E-23 T 14-10-2018 IPR001107 Band 7 domain Thimo_2390 ef2a406897de12f71e16eef8d760e003 386 Gene3D G3DSA:3.30.479.30 108 240 3.7E-17 T 14-10-2018 Thimo_2390 ef2a406897de12f71e16eef8d760e003 386 Pfam PF12221 Bacterial membrane protein N terminal 1 44 4.2E-18 T 14-10-2018 IPR020980 Menbrane protein HflK, N-terminal Thimo_2390 ef2a406897de12f71e16eef8d760e003 386 SUPERFAMILY SSF117892 112 245 3.14E-20 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily Thimo_2390 ef2a406897de12f71e16eef8d760e003 386 SMART SM00244 77 238 3.3E-29 T 14-10-2018 IPR001107 Band 7 domain Thimo_2390 ef2a406897de12f71e16eef8d760e003 386 TIGRFAM TIGR01933 hflK: HflK protein 79 340 7.0E-98 T 14-10-2018 IPR010201 HflK GO:0016021 Thimo_1123 832369842ab262ddbbf159c0db53dc01 167 SUPERFAMILY SSF53098 116 157 7.4E-11 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1123 832369842ab262ddbbf159c0db53dc01 167 Pfam PF13276 HTH-like domain 40 96 6.9E-16 T 14-10-2018 IPR025948 HTH-like domain Thimo_3265 132c79e325ec6d5ad6403062fbf3a98a 318 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 11 127 3.4E-26 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Thimo_3265 132c79e325ec6d5ad6403062fbf3a98a 318 Gene3D G3DSA:3.40.50.720 11 296 1.3E-61 T 14-10-2018 Thimo_3265 132c79e325ec6d5ad6403062fbf3a98a 318 SUPERFAMILY SSF51735 9 152 4.38E-38 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3265 132c79e325ec6d5ad6403062fbf3a98a 318 Gene3D G3DSA:3.30.360.10 128 309 1.3E-61 T 14-10-2018 Thimo_3265 132c79e325ec6d5ad6403062fbf3a98a 318 SUPERFAMILY SSF55347 146 297 8.07E-12 T 14-10-2018 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 Gene3D G3DSA:3.40.50.300 94 382 6.6E-131 T 14-10-2018 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 SUPERFAMILY SSF52540 96 381 3.84E-94 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 92 1.7E-12 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.182 T 14-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 511 5.6E-250 T 14-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 SUPERFAMILY SSF50615 10 94 9.61E-26 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 Gene3D G3DSA:1.20.150.20 383 513 3.8E-49 T 14-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.3E-45 T 14-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 SUPERFAMILY SSF47917 383 510 9.42E-47 T 14-10-2018 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 Gene3D G3DSA:2.40.30.20 1 93 1.5E-29 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 4.4E-73 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1169 c230a3fd5ee0d5c1d886d5f351b45835 513 PIRSF PIRSF039088 1 513 9.1E-233 T 14-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_0859 4d5591d9794fdb84ad2864016f1ab033 213 SUPERFAMILY SSF53448 34 180 2.25E-21 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0859 4d5591d9794fdb84ad2864016f1ab033 213 Pfam PF13632 Glycosyl transferase family group 2 56 176 1.7E-6 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Thimo_0859 4d5591d9794fdb84ad2864016f1ab033 213 Gene3D G3DSA:3.90.550.10 29 170 4.1E-14 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 Gene3D G3DSA:1.20.120.1600 20 103 4.7E-57 T 14-10-2018 Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 3.4E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 159 3.4E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 189 202 3.4E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 Pfam PF13419 Haloacid dehalogenase-like hydrolase 100 200 2.4E-10 T 14-10-2018 Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 SUPERFAMILY SSF56784 5 228 2.25E-42 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 Gene3D G3DSA:3.40.50.1000 8 221 4.7E-57 T 14-10-2018 IPR023214 HAD superfamily Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 67 194 1.6E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_1059 c7fc85386d7c257560c1c843ceee3cf4 235 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 89 200 3.4E-10 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 Pfam PF09179 TilS substrate binding domain 248 315 1.2E-19 T 14-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 13 307 22.532 T 14-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 Gene3D G3DSA:1.20.59.20 234 318 5.6E-18 T 14-10-2018 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 SUPERFAMILY SSF82829 237 319 1.15E-20 T 14-10-2018 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 SUPERFAMILY SSF56037 326 422 1.75E-21 T 14-10-2018 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 SUPERFAMILY SSF52402 21 231 1.48E-59 T 14-10-2018 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 SMART SM00977 362 430 2.6E-19 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 Gene3D G3DSA:3.40.50.620 16 233 6.7E-69 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 Pfam PF01171 PP-loop family 24 200 1.2E-50 T 14-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 363 408 5.1E-13 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 23 203 9.7E-49 T 14-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Thimo_0935 6839dad396837a32f759e26d8ed3f39d 451 Pfam PF11734 TilS substrate C-terminal domain 362 421 1.4E-19 T 14-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Thimo_2331 fffea54659418d32c3c303fce44883b0 252 SMART SM00967 8 84 2.4E-11 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Thimo_2331 fffea54659418d32c3c303fce44883b0 252 Pfam PF00588 SpoU rRNA Methylase family 101 241 1.4E-37 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Thimo_2331 fffea54659418d32c3c303fce44883b0 252 SUPERFAMILY SSF75217 78 248 9.81E-48 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Thimo_2331 fffea54659418d32c3c303fce44883b0 252 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 9 82 7.5E-13 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Thimo_2331 fffea54659418d32c3c303fce44883b0 252 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 6 248 41.18 T 14-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB Thimo_2331 fffea54659418d32c3c303fce44883b0 252 Gene3D G3DSA:3.30.1330.30 6 80 3.0E-17 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like Thimo_2331 fffea54659418d32c3c303fce44883b0 252 Gene3D G3DSA:3.40.1280.10 84 248 9.3E-60 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_2331 fffea54659418d32c3c303fce44883b0 252 SUPERFAMILY SSF55315 8 80 5.53E-14 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like Thimo_2331 fffea54659418d32c3c303fce44883b0 252 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 9 247 1.2E-70 T 14-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 Thimo_1909 ed609f91952bfa0b0697bc88a5961b3a 82 SUPERFAMILY SSF47413 6 80 8.84E-18 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_1909 ed609f91952bfa0b0697bc88a5961b3a 82 Gene3D G3DSA:1.10.260.40 1 80 2.3E-23 T 14-10-2018 Thimo_1909 ed609f91952bfa0b0697bc88a5961b3a 82 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 1 79 5.6E-24 T 14-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 Thimo_3644 6ed0c7cf1611a3c36511aa34975755be 157 Pfam PF03270 Protein of unknown function, DUF269 37 155 2.7E-45 T 14-10-2018 IPR004952 Uncharacterised protein family UPF0460 Thimo_3644 6ed0c7cf1611a3c36511aa34975755be 157 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 16 155 5.4E-53 T 14-10-2018 IPR004952 Uncharacterised protein family UPF0460 Thimo_3644 6ed0c7cf1611a3c36511aa34975755be 157 Gene3D G3DSA:1.10.3100.20 3 156 6.6E-51 T 14-10-2018 Thimo_3644 6ed0c7cf1611a3c36511aa34975755be 157 PIRSF PIRSF005788 1 157 1.4E-58 T 14-10-2018 IPR004952 Uncharacterised protein family UPF0460 Thimo_0304 6005e92afe298737ece2661b6ad9eddc 322 SUPERFAMILY SSF52283 22 142 3.21E-25 T 14-10-2018 Thimo_0304 6005e92afe298737ece2661b6ad9eddc 322 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 228 244 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Thimo_0304 6005e92afe298737ece2661b6ad9eddc 322 SUPERFAMILY SSF51735 107 292 6.08E-51 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0304 6005e92afe298737ece2661b6ad9eddc 322 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 291 2.9E-52 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Thimo_0304 6005e92afe298737ece2661b6ad9eddc 322 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 32 320 1.2E-23 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Thimo_0304 6005e92afe298737ece2661b6ad9eddc 322 Gene3D G3DSA:3.40.50.720 103 290 5.2E-113 T 14-10-2018 Thimo_0304 6005e92afe298737ece2661b6ad9eddc 322 Gene3D G3DSA:3.40.50.720 22 318 5.2E-113 T 14-10-2018 Thimo_3107 9632f3525879aee5a36f4c6286c5ee03 263 Gene3D G3DSA:3.10.20.310 47 117 3.9E-19 T 14-10-2018 Thimo_3107 9632f3525879aee5a36f4c6286c5ee03 263 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 19 240 22.11 T 14-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 Thimo_3107 9632f3525879aee5a36f4c6286c5ee03 263 Pfam PF03799 Cell division protein FtsQ 121 232 7.5E-21 T 14-10-2018 IPR005548 Cell division protein FtsQ/DivIB Thimo_3107 9632f3525879aee5a36f4c6286c5ee03 263 Pfam PF08478 POTRA domain, FtsQ-type 49 117 3.7E-13 T 14-10-2018 IPR013685 POTRA domain, FtsQ-type Thimo_3107 9632f3525879aee5a36f4c6286c5ee03 263 Gene3D G3DSA:3.40.50.11690 118 244 1.4E-34 T 14-10-2018 Thimo_1566 bfc414a91b2a79142d3b6fd179697b9f 203 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 22 180 1.8E-26 T 14-10-2018 IPR013830 SGNH hydrolase-type esterase domain Thimo_1566 bfc414a91b2a79142d3b6fd179697b9f 203 Gene3D G3DSA:3.40.50.1110 18 202 3.4E-66 T 14-10-2018 IPR036514 SGNH hydrolase superfamily Thimo_1566 bfc414a91b2a79142d3b6fd179697b9f 203 SUPERFAMILY SSF52266 18 197 5.65E-47 T 14-10-2018 Thimo_1566 bfc414a91b2a79142d3b6fd179697b9f 203 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 19 29 - T 14-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82866 294 487 1.14E-31 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82866 804 1025 3.66E-42 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.70.1430 562 666 3.7E-252 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.2090.10 718 805 3.7E-252 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82693 48 135 3.14E-21 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 18 42 5.9E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 5.9E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 46 64 5.9E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 5.9E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 5.9E-25 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.70.1430 48 813 3.7E-252 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.70.1320 141 328 3.7E-252 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82714 186 266 6.41E-8 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.2090.10 181 271 3.7E-252 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:3.30.70.1440 667 865 3.7E-252 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:1.20.1640.10 18 504 3.7E-252 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Pfam PF00873 AcrB/AcrD/AcrF family 12 1021 2.3E-157 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 Gene3D G3DSA:1.20.1640.10 505 1021 3.7E-252 T 14-10-2018 Thimo_0539 0a445a8f489df216538b85fd5ef31a0b 1051 SUPERFAMILY SSF82714 730 801 2.49E-12 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2591 78c15eb092ad2b4f52105134483bc402 348 Gene3D G3DSA:1.10.10.60 207 316 1.2E-26 T 14-10-2018 Thimo_2591 78c15eb092ad2b4f52105134483bc402 348 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 296 9.4E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Thimo_2591 78c15eb092ad2b4f52105134483bc402 348 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 296 312 9.4E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Thimo_2591 78c15eb092ad2b4f52105134483bc402 348 Pfam PF14525 AraC-binding-like domain 21 196 1.8E-29 T 14-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Thimo_2591 78c15eb092ad2b4f52105134483bc402 348 SUPERFAMILY SSF46689 263 315 7.62E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2591 78c15eb092ad2b4f52105134483bc402 348 Pfam PF12833 Helix-turn-helix domain 233 313 5.5E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_2591 78c15eb092ad2b4f52105134483bc402 348 SMART SM00342 227 312 9.7E-23 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_0056 fba08114e5986f0c54ca06ac734bae4d 207 Pfam PF02036 SCP-2 sterol transfer family 19 114 1.3E-12 T 14-10-2018 IPR003033 SCP2 sterol-binding domain Thimo_0056 fba08114e5986f0c54ca06ac734bae4d 207 SUPERFAMILY SSF55718 30 123 6.67E-7 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Thimo_2109 bac4f07782665b31d195e18397ef6014 854 SUPERFAMILY SSF52540 567 798 3.4E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Gene3D G3DSA:3.40.50.300 569 818 4.9E-98 T 14-10-2018 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Gene3D G3DSA:1.10.1420.10 267 559 2.1E-97 T 14-10-2018 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Pfam PF05192 MutS domain III 270 559 3.0E-36 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Gene3D G3DSA:3.30.420.110 128 263 2.5E-37 T 14-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Pfam PF01624 MutS domain I 9 120 8.3E-43 T 14-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 SMART SM00533 284 591 2.4E-93 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 688 704 - T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Pfam PF05188 MutS domain II 129 254 3.2E-24 T 14-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 8 847 0.0 T 14-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 SUPERFAMILY SSF48334 268 565 1.18E-84 T 14-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Pfam PF00488 MutS domain V 611 797 5.1E-81 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Gene3D G3DSA:3.40.1170.10 2 122 1.3E-51 T 14-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 PIRSF PIRSF037677 2 825 8.6E-146 T 14-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 SMART SM00534 607 794 1.8E-110 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 SUPERFAMILY SSF55271 4 116 5.23E-43 T 14-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 8 842 25.098 T 14-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Pfam PF05190 MutS family domain IV 428 518 3.2E-28 T 14-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 SUPERFAMILY SSF53150 115 267 2.09E-43 T 14-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Thimo_2109 bac4f07782665b31d195e18397ef6014 854 Gene3D G3DSA:1.10.1420.10 387 503 2.1E-97 T 14-10-2018 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 4 453 2.3E-111 T 14-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 Gene3D G3DSA:2.30.42.10 222 309 4.8E-23 T 14-10-2018 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 Pfam PF13180 PDZ domain 217 289 6.2E-7 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 SUPERFAMILY SSF50156 223 290 6.7E-17 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 Pfam PF02163 Peptidase family M50 11 440 1.1E-76 T 14-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 SUPERFAMILY SSF50156 88 186 6.97E-11 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 Gene3D G3DSA:2.30.42.10 128 221 4.6E-12 T 14-10-2018 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 SMART SM00228 212 281 3.4E-5 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0726 9b85348d30aad00c35ed89f74cb3606a 454 SMART SM00228 116 188 4.4E-4 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_3369 c1b63458b30cf16bf6c49842e68e2c20 238 Gene3D G3DSA:1.10.10.10 144 217 4.1E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3369 c1b63458b30cf16bf6c49842e68e2c20 238 Pfam PF13545 Crp-like helix-turn-helix domain 150 216 8.8E-14 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_3369 c1b63458b30cf16bf6c49842e68e2c20 238 Gene3D G3DSA:2.60.120.10 1 143 2.7E-42 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_3369 c1b63458b30cf16bf6c49842e68e2c20 238 SUPERFAMILY SSF51206 4 143 2.09E-32 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_3369 c1b63458b30cf16bf6c49842e68e2c20 238 SMART SM00419 162 210 1.1E-7 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_3369 c1b63458b30cf16bf6c49842e68e2c20 238 Pfam PF00027 Cyclic nucleotide-binding domain 29 115 1.1E-18 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_3369 c1b63458b30cf16bf6c49842e68e2c20 238 SUPERFAMILY SSF46785 144 214 6.25E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3369 c1b63458b30cf16bf6c49842e68e2c20 238 SMART SM00100 10 129 7.2E-20 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 266 292 2.5E-52 T 14-10-2018 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 334 346 2.5E-52 T 14-10-2018 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 83 108 2.5E-52 T 14-10-2018 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 170 191 2.5E-52 T 14-10-2018 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 244 265 2.5E-52 T 14-10-2018 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 439 458 2.5E-52 T 14-10-2018 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 Pfam PF00361 Proton-conducting membrane transporter 146 435 8.3E-82 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 3 661 8.1E-238 T 14-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 65 134 9.6E-25 T 14-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 85 105 6.8E-13 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 438 460 6.8E-13 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 59 83 6.8E-13 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Thimo_0596 be7dc2489aac59fde463f14688d728d6 664 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 284 306 6.8E-13 T 14-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 Gene3D G3DSA:3.30.300.10 106 379 8.1E-172 T 14-10-2018 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 PIRSF PIRSF000497 1 388 4.6E-171 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 Gene3D G3DSA:3.30.300.10 12 274 8.1E-172 T 14-10-2018 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 263 271 - T 14-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 237 376 8.1E-68 T 14-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 105 6.6E-41 T 14-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 120 130 - T 14-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 386 6.2E-183 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 Gene3D G3DSA:3.30.300.10 6 237 8.1E-172 T 14-10-2018 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 SUPERFAMILY SSF55973 237 388 1.1E-68 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 Pfam PF02772 S-adenosylmethionine synthetase, central domain 118 235 7.1E-44 T 14-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 387 56.041 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 SUPERFAMILY SSF55973 4 113 3.41E-43 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_2178 324ca8fb61d601c9aeb33d8255493506 389 SUPERFAMILY SSF55973 117 236 1.69E-50 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 Pfam PF00512 His Kinase A (phospho-acceptor) domain 389 455 4.6E-17 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 SMART SM00387 502 616 1.5E-38 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 SUPERFAMILY SSF55874 444 614 1.7E-45 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 Gene3D G3DSA:1.10.287.130 353 453 1.8E-21 T 14-10-2018 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 Gene3D G3DSA:3.30.565.10 454 618 1.8E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 613 1.9E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 594 1.9E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 569 1.9E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 555 1.9E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 Gene3D G3DSA:3.40.50.2300 650 775 8.2E-14 T 14-10-2018 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 SUPERFAMILY SSF52172 653 774 1.85E-15 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 SMART SM00388 388 455 1.0E-20 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 SUPERFAMILY SSF47384 375 456 1.12E-18 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 503 615 3.7E-29 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0093 28e39c3c990dc1e9abc4e1d8a055afc6 778 Pfam PF00072 Response regulator receiver domain 654 766 1.7E-6 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3706 a27f2bc155c82ae1e6aafba45741e917 348 SUPERFAMILY SSF46785 286 346 8.71E-5 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3706 a27f2bc155c82ae1e6aafba45741e917 348 Pfam PF02661 Fic/DOC family 105 214 2.8E-20 T 14-10-2018 IPR003812 Fido domain Thimo_3706 a27f2bc155c82ae1e6aafba45741e917 348 SUPERFAMILY SSF140931 82 279 2.88E-38 T 14-10-2018 IPR036597 Fido-like domain superfamily Thimo_3706 a27f2bc155c82ae1e6aafba45741e917 348 Gene3D G3DSA:1.10.3290.10 15 285 2.2E-63 T 14-10-2018 IPR036597 Fido-like domain superfamily Thimo_2513 4721f2c25cdbec9b0d6938e48c10ed7e 118 SUPERFAMILY SSF57716 76 111 6.27E-9 T 14-10-2018 Thimo_2513 4721f2c25cdbec9b0d6938e48c10ed7e 118 Gene3D G3DSA:1.20.120.910 1 115 6.6E-36 T 14-10-2018 Thimo_2513 4721f2c25cdbec9b0d6938e48c10ed7e 118 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 74 109 1.6E-12 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Thimo_2513 4721f2c25cdbec9b0d6938e48c10ed7e 118 SUPERFAMILY SSF109635 1 75 2.75E-21 T 14-10-2018 IPR037187 DksA, N-terminal domain superfamily Thimo_2513 4721f2c25cdbec9b0d6938e48c10ed7e 118 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 2 106 7.0E-40 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Thimo_2513 4721f2c25cdbec9b0d6938e48c10ed7e 118 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 79 103 - T 14-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 Pfam PF04542 Sigma-70 region 2 25 92 5.9E-16 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 SUPERFAMILY SSF88946 2 105 5.65E-29 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 14-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 Gene3D G3DSA:1.10.1740.10 1 121 4.7E-39 T 14-10-2018 Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 190 1.5E-95 T 14-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 186 1.1E-31 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 SUPERFAMILY SSF88659 123 186 2.43E-18 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 Pfam PF08281 Sigma-70, region 4 130 181 4.5E-18 T 14-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_1822 3e0ca0b14498856e10d2adcacd16553c 192 Gene3D G3DSA:1.10.10.10 122 191 2.2E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 281 37.59 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 14-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 Gene3D G3DSA:3.40.50.720 6 259 1.5E-108 T 14-10-2018 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 14-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 4.4E-42 T 14-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 Gene3D G3DSA:3.40.50.10860 8 276 1.5E-108 T 14-10-2018 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 278 1.3E-65 T 14-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.1E-83 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.1E-83 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.1E-83 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.1E-83 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.1E-83 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.1E-83 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.1E-83 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 SUPERFAMILY SSF51735 123 278 2.47E-46 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0618 8185656cde375cdbfe33b3654e2c8569 281 SUPERFAMILY SSF53223 1 122 4.8E-42 T 14-10-2018 Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 Gene3D G3DSA:1.10.15.40 34 81 1.1E-9 T 14-10-2018 Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 Pfam PF14697 4Fe-4S dicluster domain 103 157 7.9E-13 T 14-10-2018 Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 1 162 23.787 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 110 121 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 PIRSF PIRSF005784 1 176 8.6E-62 T 14-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 140 151 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 Pfam PF04060 Putative Fe-S cluster 41 73 4.3E-13 T 14-10-2018 IPR007202 4Fe-4S domain GO:0051536 Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 Gene3D G3DSA:3.30.70.20 82 167 3.1E-16 T 14-10-2018 Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 SUPERFAMILY SSF54862 36 169 1.16E-25 T 14-10-2018 Thimo_1271 acdf9de6f8df89c38fc13d65580c171e 176 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 5 174 1.2E-60 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 Pfam PF02875 Mur ligase family, glutamate ligase domain 354 438 2.4E-23 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 SUPERFAMILY SSF53244 354 508 3.01E-47 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 Pfam PF08245 Mur ligase middle domain 126 333 2.0E-44 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 Pfam PF01225 Mur ligase family, catalytic domain 31 101 3.8E-8 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 11 506 32.472 T 14-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 29 506 5.1E-145 T 14-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 Gene3D G3DSA:3.90.190.20 357 511 9.9E-54 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 SUPERFAMILY SSF63418 11 116 1.57E-14 T 14-10-2018 IPR035911 MurE/MurF, N-terminal Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 Gene3D G3DSA:3.40.1190.10 117 356 1.8E-76 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 SUPERFAMILY SSF53623 117 353 5.36E-69 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_3116 468daf0a422dcb3da18c73c1973a312e 513 Gene3D G3DSA:3.40.1390.10 12 115 1.8E-20 T 14-10-2018 Thimo_3288 77702d87310a5a884b6cef4a37849744 447 SUPERFAMILY SSF103473 25 436 4.32E-40 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_3288 77702d87310a5a884b6cef4a37849744 447 Pfam PF07690 Major Facilitator Superfamily 31 389 7.3E-27 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Thimo_3288 77702d87310a5a884b6cef4a37849744 447 Gene3D G3DSA:1.20.1250.20 25 424 1.7E-33 T 14-10-2018 Thimo_0290 66c9bc296632901ef8f53502776c0f27 110 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 15 101 5.4E-19 T 14-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 Thimo_0290 66c9bc296632901ef8f53502776c0f27 110 SUPERFAMILY SSF101498 35 100 3.01E-11 T 14-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily Thimo_0290 66c9bc296632901ef8f53502776c0f27 110 Pfam PF04316 Anti-sigma-28 factor, FlgM 45 98 1.0E-13 T 14-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal Thimo_3750 433e95a0201e1c09aa3967c87dab35c0 211 Pfam PF01464 Transglycosylase SLT domain 8 138 3.4E-17 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Thimo_3750 433e95a0201e1c09aa3967c87dab35c0 211 SUPERFAMILY SSF53955 15 141 2.53E-16 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_3750 433e95a0201e1c09aa3967c87dab35c0 211 Gene3D G3DSA:1.10.530.10 4 150 2.6E-9 T 14-10-2018 Thimo_2146 b0980af97d2ed67518440252657dee4b 238 SMART SM00862 151 229 4.4E-24 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2146 b0980af97d2ed67518440252657dee4b 238 SUPERFAMILY SSF46894 128 230 3.4E-26 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_2146 b0980af97d2ed67518440252657dee4b 238 Pfam PF00072 Response regulator receiver domain 8 116 7.6E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2146 b0980af97d2ed67518440252657dee4b 238 SMART SM00448 5 116 4.4E-40 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2146 b0980af97d2ed67518440252657dee4b 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 2.8E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2146 b0980af97d2ed67518440252657dee4b 238 SUPERFAMILY SSF52172 3 128 7.26E-39 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2146 b0980af97d2ed67518440252657dee4b 238 Gene3D G3DSA:1.10.10.10 132 235 4.4E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2146 b0980af97d2ed67518440252657dee4b 238 Gene3D G3DSA:3.40.50.2300 1 131 1.2E-34 T 14-10-2018 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 11 28 2.4E-48 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 61 88 2.4E-48 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 241 258 2.4E-48 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 201 225 2.4E-48 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 2.4E-48 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 176 200 2.4E-48 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 183 322 3.8E-53 T 14-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 Gene3D G3DSA:1.10.1040.10 192 336 1.4E-52 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 Gene3D G3DSA:3.40.50.720 2 190 1.4E-57 T 14-10-2018 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 191 212 - T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 SUPERFAMILY SSF51735 8 181 8.13E-50 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 7 325 37.471 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 9 162 1.1E-48 T 14-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 SUPERFAMILY SSF48179 182 334 4.59E-57 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_3674 373f1e97d41c8961bb3abcf2e5a48850 336 PIRSF PIRSF000114 3 335 1.9E-103 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 Pfam PF00365 Phosphofructokinase 10 320 6.2E-45 T 14-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 3 397 44.072 T 14-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 SUPERFAMILY SSF53784 4 409 1.57E-105 T 14-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 235 247 1.0E-9 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 137 154 1.0E-9 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 8 27 1.0E-9 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 179 195 1.0E-9 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 PIRSF PIRSF036483 2 416 8.1E-201 T 14-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 Gene3D G3DSA:3.40.50.460 142 385 6.0E-150 T 14-10-2018 Thimo_1198 8d7936dcea46b284b6adc3cb15fed591 418 Gene3D G3DSA:3.40.50.450 5 398 6.0E-150 T 14-10-2018 Thimo_1546 aefe18a8936402c149c22badf758eaa4 782 SUPERFAMILY SSF50969 129 461 7.59E-20 T 14-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like Thimo_1546 aefe18a8936402c149c22badf758eaa4 782 SUPERFAMILY SSF50969 389 762 4.32E-13 T 14-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like Thimo_1546 aefe18a8936402c149c22badf758eaa4 782 Gene3D G3DSA:2.130.10.10 70 329 2.6E-9 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_1546 aefe18a8936402c149c22badf758eaa4 782 Pfam PF13449 Esterase-like activity of phytase 475 761 1.8E-45 T 14-10-2018 IPR027372 Phytase-like domain Thimo_2778 008130dc84f36ade8b42694f8963fb26 343 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 24 178 23.866 T 14-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 Thimo_2778 008130dc84f36ade8b42694f8963fb26 343 Gene3D G3DSA:3.30.70.1070 269 338 6.1E-5 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Thimo_2778 008130dc84f36ade8b42694f8963fb26 343 Gene3D G3DSA:2.40.40.10 85 179 3.3E-35 T 14-10-2018 IPR036908 RlpA-like domain superfamily Thimo_2778 008130dc84f36ade8b42694f8963fb26 343 Pfam PF05036 Sporulation related domain 271 334 3.3E-6 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 Thimo_2778 008130dc84f36ade8b42694f8963fb26 343 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 88 189 1.5E-44 T 14-10-2018 IPR012997 Rare lipoprotein A Thimo_2778 008130dc84f36ade8b42694f8963fb26 343 SUPERFAMILY SSF110997 269 337 1.12E-7 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Thimo_2778 008130dc84f36ade8b42694f8963fb26 343 SUPERFAMILY SSF50685 80 175 1.57E-9 T 14-10-2018 IPR036908 RlpA-like domain superfamily Thimo_2778 008130dc84f36ade8b42694f8963fb26 343 Pfam PF03330 Lytic transglycolase 86 174 5.0E-26 T 14-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Thimo_0545 97af3caaa722724c66e5517a7c43bfa8 112 Gene3D G3DSA:3.30.1420.10 1 39 4.2E-14 T 14-10-2018 Thimo_0545 97af3caaa722724c66e5517a7c43bfa8 112 PIRSF PIRSF006223 3 109 2.7E-31 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0545 97af3caaa722724c66e5517a7c43bfa8 112 Gene3D G3DSA:1.10.10.370 40 108 1.4E-21 T 14-10-2018 Thimo_0545 97af3caaa722724c66e5517a7c43bfa8 112 SUPERFAMILY SSF69721 2 105 1.96E-30 T 14-10-2018 IPR025526 DsrC-like domain superfamily Thimo_0545 97af3caaa722724c66e5517a7c43bfa8 112 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 3 105 2.3E-30 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0545 97af3caaa722724c66e5517a7c43bfa8 112 Pfam PF04358 DsrC like protein 4 105 6.5E-35 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_1930 2b9870bcd3432ebac9b016d81eac8740 437 TIGRFAM TIGR00836 amt: ammonium transporter 36 435 2.6E-136 T 14-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 Thimo_1930 2b9870bcd3432ebac9b016d81eac8740 437 Pfam PF00909 Ammonium Transporter Family 38 435 7.0E-119 T 14-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Thimo_1930 2b9870bcd3432ebac9b016d81eac8740 437 ProSitePatterns PS01219 Ammonium transporters signature. 187 212 - T 14-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Thimo_1930 2b9870bcd3432ebac9b016d81eac8740 437 SUPERFAMILY SSF111352 33 416 5.23E-130 T 14-10-2018 Thimo_1930 2b9870bcd3432ebac9b016d81eac8740 437 Gene3D G3DSA:1.10.3430.10 18 437 1.3E-143 T 14-10-2018 IPR029020 Ammonium/urea transporter Thimo_0766 02c5f05c1f1e07acd3bf7ec23457037a 118 SMART SM00961 18 115 1.1E-52 T 14-10-2018 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0766 02c5f05c1f1e07acd3bf7ec23457037a 118 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 19 114 2.5E-40 T 14-10-2018 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0766 02c5f05c1f1e07acd3bf7ec23457037a 118 Gene3D G3DSA:3.30.190.10 1 116 1.2E-45 T 14-10-2018 IPR036385 Ribulose bisphosphate carboxylase, small subunit superfamily KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0766 02c5f05c1f1e07acd3bf7ec23457037a 118 SUPERFAMILY SSF55239 12 115 4.84E-44 T 14-10-2018 IPR036385 Ribulose bisphosphate carboxylase, small subunit superfamily KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0035 d65372bfe4680b42d923f548e583ce2f 193 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 110 138 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Thimo_0035 d65372bfe4680b42d923f548e583ce2f 193 SUPERFAMILY SSF51161 4 164 6.55E-43 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_0035 d65372bfe4680b42d923f548e583ce2f 193 Gene3D G3DSA:2.20.70.110 153 190 2.6E-15 T 14-10-2018 Thimo_0035 d65372bfe4680b42d923f548e583ce2f 193 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 136 2.5E-5 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0035 d65372bfe4680b42d923f548e583ce2f 193 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 48 1.3E-6 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0035 d65372bfe4680b42d923f548e583ce2f 193 Gene3D G3DSA:2.160.10.10 3 151 4.5E-45 T 14-10-2018 Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 Gene3D G3DSA:1.10.8.60 185 258 2.3E-31 T 14-10-2018 Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 Gene3D G3DSA:1.10.10.10 260 336 2.6E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 4.5E-115 T 14-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 353 181.167 T 14-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 SUPERFAMILY SSF46785 260 332 1.27E-23 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 Gene3D G3DSA:3.40.50.300 23 184 5.2E-36 T 14-10-2018 Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 7.9E-32 T 14-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 7.1E-144 T 14-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 330 2.0E-31 T 14-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 SUPERFAMILY SSF52540 23 255 1.76E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2736 0bfca23bf47cb39d27a0be83876ad73c 353 SMART SM00382 54 185 2.3E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1192 698f7efd5d03f6a657e78b5592df5d2e 109 Pfam PF05164 Cell division protein ZapA 8 92 7.0E-23 T 14-10-2018 IPR007838 Cell division protein ZapA-like Thimo_1192 698f7efd5d03f6a657e78b5592df5d2e 109 SUPERFAMILY SSF102829 8 96 6.93E-22 T 14-10-2018 IPR036192 Cell division protein ZapA-like superfamily Thimo_1192 698f7efd5d03f6a657e78b5592df5d2e 109 Gene3D G3DSA:1.20.5.50 50 102 2.4E-13 T 14-10-2018 Thimo_1192 698f7efd5d03f6a657e78b5592df5d2e 109 Gene3D G3DSA:1.10.20.30 1 49 6.6E-22 T 14-10-2018 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 SUPERFAMILY SSF47917 458 543 1.02E-12 T 14-10-2018 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 SUPERFAMILY SSF50615 5 72 8.63E-6 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 87 214 4.6E-40 T 14-10-2018 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 224 445 2.9E-89 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 5 597 48.266 T 14-10-2018 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 SUPERFAMILY SSF52540 183 445 1.83E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Gene3D G3DSA:1.10.1140.10 447 598 1.8E-34 T 14-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Gene3D G3DSA:2.40.50.100 118 197 2.3E-165 T 14-10-2018 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 12 71 7.2E-7 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 436 445 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Gene3D G3DSA:2.40.30.20 1 74 3.4E-19 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1487 2a4d96f5dcf78975dbdb0d35981f8c3d 604 Gene3D G3DSA:3.40.50.300 75 445 2.3E-165 T 14-10-2018 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 Gene3D G3DSA:3.30.540.10 1 196 3.3E-77 T 14-10-2018 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 PIRSF PIRSF000904 1 337 3.1E-127 T 14-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 PIRSF PIRSF500210 1 337 6.5E-130 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 195 1.6E-67 T 14-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 276 288 - T 14-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 180 203 1.1E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 1.1E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 149 172 1.1E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 30 57 1.1E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 206 233 1.1E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 310 335 1.1E-72 T 14-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 Gene3D G3DSA:3.40.190.80 198 336 5.4E-51 T 14-10-2018 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 336 47.021 T 14-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Thimo_2630 25fd6fb392763fb2dfbdfbf844a6bf81 338 SUPERFAMILY SSF56655 2 334 1.07E-116 T 14-10-2018 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 SUPERFAMILY SSF55874 205 355 3.14E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 SMART SM00387 242 357 2.7E-28 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 SUPERFAMILY SSF55785 14 107 1.47E-10 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 Pfam PF08448 PAS fold 16 106 1.1E-7 T 14-10-2018 IPR013656 PAS fold-4 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 Gene3D G3DSA:3.30.565.10 200 356 1.4E-37 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 243 356 1.4E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 Gene3D G3DSA:1.10.287.130 142 199 4.4E-14 T 14-10-2018 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 SUPERFAMILY SSF47384 129 201 2.55E-13 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 Pfam PF00512 His Kinase A (phospho-acceptor) domain 141 200 2.0E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 SMART SM00388 138 203 7.0E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 303 1.2E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 336 1.2E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 354 1.2E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 317 1.2E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3680 e518a43f5e73808f08f5c8230e3709c3 360 Gene3D G3DSA:3.30.450.20 6 121 3.0E-19 T 14-10-2018 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 Pfam PF01434 Peptidase family M41 382 592 5.5E-85 T 14-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 Gene3D G3DSA:1.10.8.60 323 399 1.6E-28 T 14-10-2018 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 608 38.264 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 ProSitePatterns PS00674 AAA-protein family signature. 291 309 - T 14-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 SUPERFAMILY SSF52540 142 391 1.04E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 Gene3D G3DSA:1.20.58.760 402 602 6.7E-78 T 14-10-2018 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 Gene3D G3DSA:2.40.50.920 23 99 2.7E-14 T 14-10-2018 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 99 593 8.3E-246 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 188 320 3.1E-46 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 Gene3D G3DSA:3.40.50.300 136 322 5.6E-71 T 14-10-2018 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 SMART SM00382 184 323 1.3E-26 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 Pfam PF06480 FtsH Extracellular 5 82 7.9E-15 T 14-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Thimo_2548 948e4b500cef04ef194026da0415f4bd 640 SUPERFAMILY SSF140990 402 603 6.02E-78 T 14-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Thimo_1696 a98b6ac1877dd94212f28bd2afe0ff34 155 Pfam PF01928 CYTH domain 2 135 6.7E-15 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 Thimo_1696 a98b6ac1877dd94212f28bd2afe0ff34 155 SUPERFAMILY SSF55154 1 149 2.78E-42 T 14-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 Thimo_1696 a98b6ac1877dd94212f28bd2afe0ff34 155 PIRSF PIRSF016487 1 155 1.3E-58 T 14-10-2018 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like Thimo_1696 a98b6ac1877dd94212f28bd2afe0ff34 155 Gene3D G3DSA:2.40.320.10 1 151 1.9E-47 T 14-10-2018 Thimo_1696 a98b6ac1877dd94212f28bd2afe0ff34 155 SMART SM01118 2 149 1.8E-23 T 14-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 Thimo_0275 24aed24674b93d605ae6e89c9e9d0613 402 Gene3D G3DSA:3.30.750.140 261 376 1.1E-29 T 14-10-2018 IPR038610 FliK-like, C-terminal domain superfamily Thimo_0275 24aed24674b93d605ae6e89c9e9d0613 402 Pfam PF02120 Flagellar hook-length control protein FliK 280 361 1.5E-20 T 14-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Thimo_3555 e54a1e445688b9659bdbbe629ac53196 248 Gene3D G3DSA:3.40.1010.10 8 140 2.6E-31 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Thimo_3555 e54a1e445688b9659bdbbe629ac53196 248 SUPERFAMILY SSF53790 7 246 1.96E-43 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Thimo_3555 e54a1e445688b9659bdbbe629ac53196 248 Gene3D G3DSA:3.30.950.10 142 245 4.9E-12 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Thimo_3555 e54a1e445688b9659bdbbe629ac53196 248 PIRSF PIRSF036427 8 248 1.1E-67 T 14-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 Thimo_3555 e54a1e445688b9659bdbbe629ac53196 248 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 9 242 7.5E-70 T 14-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 Thimo_3555 e54a1e445688b9659bdbbe629ac53196 248 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 220 1.7E-44 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Thimo_0286 40f4a612a8cb166470d2e027f0109f27 296 PIRSF PIRSF003092 5 281 4.9E-71 T 14-10-2018 IPR025501 ATP binding protein MinD Thimo_0286 40f4a612a8cb166470d2e027f0109f27 296 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 26 241 1.4E-17 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0286 40f4a612a8cb166470d2e027f0109f27 296 Gene3D G3DSA:3.40.50.300 24 264 2.3E-51 T 14-10-2018 Thimo_0286 40f4a612a8cb166470d2e027f0109f27 296 SUPERFAMILY SSF52540 24 277 4.14E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 SUPERFAMILY SSF48452 1123 1311 1.35E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 SUPERFAMILY SSF48452 880 1032 2.59E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Pfam PF12770 CHAT domain 97 323 2.2E-18 T 14-10-2018 IPR024983 CHAT domain Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 SUPERFAMILY SSF52540 385 613 4.09E-12 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Gene3D G3DSA:3.40.50.300 372 552 6.8E-11 T 14-10-2018 Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Pfam PF13191 AAA ATPase domain 387 544 2.0E-12 T 14-10-2018 Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Gene3D G3DSA:1.25.40.10 860 1032 1.9E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Gene3D G3DSA:1.25.40.10 1033 1156 6.8E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 SUPERFAMILY SSF48452 1037 1154 7.33E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1398 f8ec1dd518e63b32aa58ff28e53a2f91 1392 Gene3D G3DSA:1.25.40.10 1157 1390 7.6E-23 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1550 9cdcab10d1d441a429144d1d87fd4382 485 Pfam PF02386 Cation transport protein 100 472 1.0E-41 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 Gene3D G3DSA:1.10.3730.10 166 273 1.4E-38 T 14-10-2018 Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 SUPERFAMILY SSF51735 6 161 1.93E-34 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 268 1.1E-74 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 Gene3D G3DSA:3.40.50.720 2 165 4.5E-51 T 14-10-2018 Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 SUPERFAMILY SSF48179 163 271 9.69E-35 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 268 25.564 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 PIRSF PIRSF000193 3 271 4.7E-75 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 268 8.4E-34 T 14-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Thimo_0749 954a4c9001763a41ca0e171cc8d9ec98 276 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 100 3.3E-19 T 14-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 Pfam PF00425 chorismate binding enzyme 221 474 8.6E-96 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 482 3.7E-168 T 14-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 SUPERFAMILY SSF56322 14 483 7.98E-160 T 14-10-2018 IPR005801 ADC synthase GO:0009058 Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 Pfam PF04715 Anthranilate synthase component I, N terminal region 26 169 5.8E-34 T 14-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 Gene3D G3DSA:3.60.120.10 2 491 1.6E-180 T 14-10-2018 IPR005801 ADC synthase GO:0009058 Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 PRINTS PR00095 Anthranilate synthase component I signature 336 349 1.3E-24 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 PRINTS PR00095 Anthranilate synthase component I signature 322 335 1.3E-24 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 PRINTS PR00095 Anthranilate synthase component I signature 431 445 1.3E-24 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3650 0966fdb409793d0c5c5e9edf1cea6d95 497 PRINTS PR00095 Anthranilate synthase component I signature 416 430 1.3E-24 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_2449 3b361855e082e25ff1024c429f44612c 246 Gene3D G3DSA:2.30.210.20 3 62 7.0E-24 T 14-10-2018 Thimo_2449 3b361855e082e25ff1024c429f44612c 246 SUPERFAMILY SSF55729 8 228 6.0E-89 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_2449 3b361855e082e25ff1024c429f44612c 246 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 205 2.1E-73 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Thimo_2449 3b361855e082e25ff1024c429f44612c 246 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 246 94.892 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Thimo_2449 3b361855e082e25ff1024c429f44612c 246 Gene3D G3DSA:3.40.630.70 63 241 3.0E-66 T 14-10-2018 Thimo_2449 3b361855e082e25ff1024c429f44612c 246 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 33 216 1.6E-66 T 14-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1492 1506 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:2.130.10.10 913 1051 3.1E-49 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:2.130.10.10 1052 1178 6.3E-49 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1156 1170 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1180 1211 3.7E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1054 1085 3.5E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1474 1504 1.4E-7 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1348 1379 4.0E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1390 1421 9.3E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1306 1337 6.9E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1264 1295 4.0E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 970 1001 1.9E-7 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1222 1253 4.0E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1432 1463 3.7E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1012 1043 9.3E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1133 1169 3.5E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 923 959 7.7E-9 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF00400 WD domain, G-beta repeat 1096 1127 3.5E-8 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:2.130.10.10 1347 1557 4.7E-66 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:2.130.10.10 1179 1346 4.1E-65 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1366 1380 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1030 1044 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1408 1422 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1072 1086 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 920 959 7.3E-12 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1256 1295 6.1E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1298 1337 3.0E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1340 1379 6.1E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1382 1421 1.3E-10 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 962 1001 1.6E-10 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1424 1463 7.1E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1004 1043 1.3E-10 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1466 1505 9.6E-10 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1214 1253 6.1E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1088 1127 8.1E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1130 1169 2.3E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1046 1085 8.1E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SMART SM00320 1172 1211 7.1E-11 T 14-10-2018 IPR001680 WD40 repeat GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:3.40.50.10140 114 239 5.2E-6 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF50978 1055 1380 1.03E-110 T 14-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF52540 345 554 3.55E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1450 1464 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1114 1128 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF50978 1306 1537 1.05E-73 T 14-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF141571 781 893 1.96E-21 T 14-10-2018 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 PRINTS PR00320 G protein beta WD-40 repeat signature 1030 1044 4.7E-6 T 14-10-2018 IPR020472 G-protein beta WD-40 repeat Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 PRINTS PR00320 G protein beta WD-40 repeat signature 988 1002 4.7E-6 T 14-10-2018 IPR020472 G-protein beta WD-40 repeat Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 PRINTS PR00320 G protein beta WD-40 repeat signature 1156 1170 4.7E-6 T 14-10-2018 IPR020472 G-protein beta WD-40 repeat Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1324 1338 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 988 1002 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF13676 TIR domain 140 236 1.3E-7 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1198 1212 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Gene3D G3DSA:2.160.20.100 786 910 4.5E-22 T 14-10-2018 Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF52200 134 235 1.05E-5 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF13599 Pentapeptide repeats (9 copies) 818 876 5.3E-10 T 14-10-2018 IPR001646 Pentapeptide repeat Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1240 1254 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 Pfam PF05729 NACHT domain 363 484 4.2E-7 T 14-10-2018 IPR007111 NACHT nucleoside triphosphatase Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1282 1296 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 946 960 - T 14-10-2018 IPR019775 WD40 repeat, conserved site Thimo_0216 020e9c4e5a74cfa0e5f446baec4211da 1585 SUPERFAMILY SSF50998 920 1089 2.12E-56 T 14-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Thimo_1803 680b730ab25f85f8df47d47a6f53e6c4 369 Gene3D G3DSA:3.40.630.10 18 344 1.1E-77 T 14-10-2018 Thimo_1803 680b730ab25f85f8df47d47a6f53e6c4 369 Pfam PF05343 M42 glutamyl aminopeptidase 52 340 6.8E-67 T 14-10-2018 IPR008007 Peptidase M42 Thimo_1803 680b730ab25f85f8df47d47a6f53e6c4 369 SUPERFAMILY SSF53187 9 346 8.46E-48 T 14-10-2018 Thimo_1803 680b730ab25f85f8df47d47a6f53e6c4 369 TIGRFAM TIGR03106 trio_M42_hydro: hydrolase, peptidase M42 family 7 348 4.7E-173 T 14-10-2018 IPR017537 Peptidase M42, hydrolase Thimo_1803 680b730ab25f85f8df47d47a6f53e6c4 369 SUPERFAMILY SSF101821 77 189 2.44E-24 T 14-10-2018 Thimo_1803 680b730ab25f85f8df47d47a6f53e6c4 369 Gene3D G3DSA:2.40.30.40 80 174 1.1E-77 T 14-10-2018 IPR023367 Peptidase M42, domain 2 Thimo_1803 680b730ab25f85f8df47d47a6f53e6c4 369 PIRSF PIRSF001123 9 347 2.9E-26 T 14-10-2018 IPR008007 Peptidase M42 Thimo_3774 4526729007f99082f37a6ca1fa9080c4 432 SUPERFAMILY SSF56672 39 304 1.59E-29 T 14-10-2018 Thimo_3774 4526729007f99082f37a6ca1fa9080c4 432 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 79 301 1.3E-29 T 14-10-2018 IPR000477 Reverse transcriptase domain Thimo_3774 4526729007f99082f37a6ca1fa9080c4 432 Pfam PF08388 Group II intron, maturase-specific domain 364 412 5.2E-5 T 14-10-2018 IPR013597 Group II intron, maturase-specific Thimo_3497 6da748ef950eac8c0ec8fb0beabaf597 261 SUPERFAMILY SSF117143 92 222 6.02E-36 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Thimo_3497 6da748ef950eac8c0ec8fb0beabaf597 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 258 2.3E-25 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3497 6da748ef950eac8c0ec8fb0beabaf597 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 1.1E-116 T 14-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 Thimo_3497 6da748ef950eac8c0ec8fb0beabaf597 261 Pfam PF00460 Flagella basal body rod protein 5 35 7.0E-12 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Thimo_3497 6da748ef950eac8c0ec8fb0beabaf597 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Thimo_3497 6da748ef950eac8c0ec8fb0beabaf597 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 145 243 3.1E-34 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Thimo_3497 6da748ef950eac8c0ec8fb0beabaf597 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 2.6E-46 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Thimo_1834 5d4dcbe426a2bf322a2bb10376bf4405 215 PIRSF PIRSF001435 2 215 8.1E-76 T 14-10-2018 Thimo_1834 5d4dcbe426a2bf322a2bb10376bf4405 215 SMART SM00478 37 194 2.3E-28 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Thimo_1834 5d4dcbe426a2bf322a2bb10376bf4405 215 Gene3D G3DSA:1.10.340.30 23 138 1.3E-53 T 14-10-2018 Thimo_1834 5d4dcbe426a2bf322a2bb10376bf4405 215 SUPERFAMILY SSF48150 5 213 6.28E-57 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Thimo_1834 5d4dcbe426a2bf322a2bb10376bf4405 215 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 33 172 3.1E-18 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Thimo_1834 5d4dcbe426a2bf322a2bb10376bf4405 215 Gene3D G3DSA:1.10.1670.10 5 211 1.3E-53 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Thimo_1921 ac61e291447f40d3027a1925b8cbd3fe 403 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1921 ac61e291447f40d3027a1925b8cbd3fe 403 Gene3D G3DSA:1.10.1060.10 2 105 3.5E-9 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1921 ac61e291447f40d3027a1925b8cbd3fe 403 SUPERFAMILY SSF54862 20 118 5.44E-20 T 14-10-2018 Thimo_1921 ac61e291447f40d3027a1925b8cbd3fe 403 PIRSF PIRSF000139 5 402 3.4E-109 T 14-10-2018 Thimo_1921 ac61e291447f40d3027a1925b8cbd3fe 403 Pfam PF02754 Cysteine-rich domain 302 385 1.4E-11 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_1921 ac61e291447f40d3027a1925b8cbd3fe 403 Pfam PF02754 Cysteine-rich domain 174 254 2.0E-11 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_1921 ac61e291447f40d3027a1925b8cbd3fe 403 Pfam PF12838 4Fe-4S dicluster domain 24 89 2.7E-12 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_3344 f149b4eac21aa6b28464e6ae410f3254 137 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 21 118 9.0E-16 T 14-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal Thimo_3344 f149b4eac21aa6b28464e6ae410f3254 137 Gene3D G3DSA:3.30.1370.140 15 112 7.0E-26 T 14-10-2018 IPR038527 HupH, C-terminal domain superfamily Thimo_3344 f149b4eac21aa6b28464e6ae410f3254 137 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 17 129 9.3E-29 T 14-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 67 636 34.592 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 SMART SM00863 171 221 3.5E-25 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 SUPERFAMILY SSF52954 531 636 1.96E-30 T 14-10-2018 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 SUPERFAMILY SSF55186 64 243 4.06E-68 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Pfam PF02824 TGS domain 4 61 3.2E-11 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.30.930.10 225 533 2.4E-124 T 14-10-2018 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.30.980.10 70 224 1.9E-63 T 14-10-2018 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.10.20.30 3 62 7.6E-22 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 509 522 8.0E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 466 494 8.0E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 364 387 8.0E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 536 548 8.0E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 331 359 8.0E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.40.50.800 534 639 2.4E-29 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Pfam PF03129 Anticodon binding domain 543 624 3.1E-19 T 14-10-2018 IPR004154 Anticodon-binding Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 73 633 1.0E-217 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 SUPERFAMILY SSF55681 245 528 1.09E-95 T 14-10-2018 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 171 221 2.5E-14 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Gene3D G3DSA:3.30.54.20 131 188 1.9E-63 T 14-10-2018 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 SUPERFAMILY SSF81271 3 61 7.19E-15 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Thimo_2828 19a7124df1139fdc251656dfbcfe32f5 639 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 325 531 1.1E-43 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3539 1e433541b67b23a5a3315266ad7ba138 204 SUPERFAMILY SSF81342 19 200 1.33E-35 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_3539 1e433541b67b23a5a3315266ad7ba138 204 Pfam PF01292 Prokaryotic cytochrome b561 22 197 2.7E-24 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_3539 1e433541b67b23a5a3315266ad7ba138 204 Gene3D G3DSA:1.20.950.20 14 185 3.5E-18 T 14-10-2018 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 SUPERFAMILY SSF48150 3 207 2.04E-73 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 14-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.1E-7 T 14-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 Gene3D G3DSA:1.10.340.30 21 132 4.6E-75 T 14-10-2018 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.4E-20 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 9.5E-5 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 SMART SM00525 186 206 4.7E-4 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.0E-83 T 14-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 14-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 PIRSF PIRSF001435 1 211 2.9E-49 T 14-10-2018 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 SMART SM00478 38 185 2.1E-57 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 Gene3D G3DSA:1.10.1670.10 12 203 4.6E-75 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Thimo_1808 5dcf26625026e5a7bf0b4d000174a069 219 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.907 T 14-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 SMART SM00382 149 279 4.5E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 4 449 2.8E-174 T 14-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 182 196 5.3E-51 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 214 228 5.3E-51 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 410 429 5.3E-51 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 248 275 5.3E-51 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 150 170 5.3E-51 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 Gene3D G3DSA:3.40.50.300 115 282 4.9E-47 T 14-10-2018 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 Pfam PF00308 Bacterial dnaA protein 117 334 9.0E-94 T 14-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 SUPERFAMILY SSF48295 347 451 9.42E-35 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 Gene3D G3DSA:1.10.1750.10 359 452 1.3E-34 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 SUPERFAMILY SSF52540 117 329 6.35E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 Gene3D G3DSA:1.10.8.60 283 353 6.2E-24 T 14-10-2018 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 Pfam PF11638 DnaA N-terminal domain 3 62 8.2E-15 T 14-10-2018 IPR024633 DnaA N-terminal domain Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 361 429 6.8E-31 T 14-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 ProSitePatterns PS01008 DnaA protein signature. 410 429 - T 14-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 Gene3D G3DSA:3.30.300.180 1 106 2.0E-23 T 14-10-2018 IPR038454 DnaA, N-terminal domain superfamily Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 SMART SM00760 360 429 3.8E-40 T 14-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Thimo_0003 3d8d8cb38be995a4533ee8d8d10b3d64 452 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 451 32.642 T 14-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Thimo_1234 66d7a8ede3f858afd822f044a150273c 454 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 255 266 - T 14-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Thimo_1234 66d7a8ede3f858afd822f044a150273c 454 SUPERFAMILY SSF53720 4 453 8.25E-144 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Thimo_1234 66d7a8ede3f858afd822f044a150273c 454 Gene3D G3DSA:3.40.309.10 231 420 9.1E-155 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Thimo_1234 66d7a8ede3f858afd822f044a150273c 454 Pfam PF00171 Aldehyde dehydrogenase family 3 450 1.3E-140 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Thimo_1234 66d7a8ede3f858afd822f044a150273c 454 Gene3D G3DSA:3.40.605.10 8 446 9.1E-155 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Thimo_3442 07a7475777810b511084acd42bc6e8dd 272 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 2 269 3.2E-89 T 14-10-2018 Thimo_3442 07a7475777810b511084acd42bc6e8dd 272 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 14-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Thimo_3442 07a7475777810b511084acd42bc6e8dd 272 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 263 6.8E-17 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Thimo_3442 07a7475777810b511084acd42bc6e8dd 272 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 2 270 1.3E-78 T 14-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Thimo_3442 07a7475777810b511084acd42bc6e8dd 272 Gene3D G3DSA:3.60.10.10 2 271 1.5E-72 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Thimo_3442 07a7475777810b511084acd42bc6e8dd 272 SUPERFAMILY SSF56219 2 271 6.41E-82 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Thimo_1506 c94fb42dc5643a2670d6732e77448bdc 104 Gene3D G3DSA:3.30.110.60 6 103 5.0E-30 T 14-10-2018 IPR035920 YhbY-like superfamily Thimo_1506 c94fb42dc5643a2670d6732e77448bdc 104 SUPERFAMILY SSF75471 6 97 2.88E-26 T 14-10-2018 IPR035920 YhbY-like superfamily Thimo_1506 c94fb42dc5643a2670d6732e77448bdc 104 SMART SM01103 7 90 2.4E-33 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Thimo_1506 c94fb42dc5643a2670d6732e77448bdc 104 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 13 95 5.0E-16 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Thimo_1506 c94fb42dc5643a2670d6732e77448bdc 104 Pfam PF01985 CRS1 / YhbY (CRM) domain 8 90 6.7E-20 T 14-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 SUPERFAMILY SSF50447 152 299 5.61E-33 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 Pfam PF03144 Elongation factor Tu domain 2 219 289 1.7E-9 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 134 3.3E-25 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:3.30.70.870 306 590 6.8E-127 T 14-10-2018 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 SUPERFAMILY SSF54980 302 387 8.63E-15 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:2.40.50.250 483 599 6.8E-127 T 14-10-2018 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:3.40.50.300 1 198 3.8E-65 T 14-10-2018 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 Pfam PF00679 Elongation factor G C-terminus 395 476 3.7E-21 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 3.3E-281 T 14-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 71 81 2.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 87 98 2.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 123 132 2.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 7 20 2.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 PRINTS PR00315 GTP-binding elongation factor signature 51 59 2.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:2.40.30.10 199 299 2.0E-31 T 14-10-2018 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 SUPERFAMILY SSF52540 3 207 1.68E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 5.0E-55 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 Gene3D G3DSA:3.30.70.240 389 482 6.8E-127 T 14-10-2018 Thimo_1119 7bc64dd9bb650f04e211ff2e2baa3cce 603 SUPERFAMILY SSF54980 398 512 1.25E-25 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_1061 93c1969509d79c30d7438abbda287c7a 110 Pfam PF02699 Preprotein translocase subunit 24 99 2.9E-25 T 14-10-2018 IPR003849 Preprotein translocase YajC Thimo_1061 93c1969509d79c30d7438abbda287c7a 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 23 102 1.8E-23 T 14-10-2018 IPR003849 Preprotein translocase YajC Thimo_1061 93c1969509d79c30d7438abbda287c7a 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 60 78 1.7E-11 T 14-10-2018 IPR003849 Preprotein translocase YajC Thimo_1061 93c1969509d79c30d7438abbda287c7a 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 22 42 1.7E-11 T 14-10-2018 IPR003849 Preprotein translocase YajC Thimo_1061 93c1969509d79c30d7438abbda287c7a 110 SMART SM01323 20 102 1.1E-35 T 14-10-2018 IPR003849 Preprotein translocase YajC Thimo_2739 db0cee5353de3b2262778dde66b923a7 425 Gene3D G3DSA:3.40.640.10 1 285 1.2E-99 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2739 db0cee5353de3b2262778dde66b923a7 425 PIRSF PIRSF001434 1 425 1.2E-129 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Thimo_2739 db0cee5353de3b2262778dde66b923a7 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 3 422 7.0E-197 T 14-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 Thimo_2739 db0cee5353de3b2262778dde66b923a7 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 421 2.0E-141 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Thimo_2739 db0cee5353de3b2262778dde66b923a7 425 Gene3D G3DSA:3.90.1150.10 289 425 6.7E-51 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2739 db0cee5353de3b2262778dde66b923a7 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Thimo_2739 db0cee5353de3b2262778dde66b923a7 425 SUPERFAMILY SSF53383 1 422 1.61E-127 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 4.5E-49 T 14-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 Gene3D G3DSA:1.10.40.30 382 445 1.3E-150 T 14-10-2018 Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 454 1.2E-128 T 14-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 Gene3D G3DSA:1.10.275.10 1 117 6.6E-49 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 Pfam PF00206 Lyase 14 312 9.3E-58 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 Gene3D G3DSA:1.20.200.10 118 446 1.3E-150 T 14-10-2018 Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.9E-17 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 1.9E-17 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 1.9E-17 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 1.9E-17 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1468 be0acf36ffedf488675cdd9b7894bcfc 455 SUPERFAMILY SSF48557 10 453 6.44E-103 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 863 990 5.3E-37 T 14-10-2018 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 337 467 1.2E-10 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 792 864 2.1E-6 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 73 195 2.6E-6 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 615 738 2.2E-17 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 871 988 5.5E-19 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:2.10.70.100 814 860 1.7E-12 T 14-10-2018 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 739 810 2.5E-17 T 14-10-2018 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00091 867 934 1.3E-6 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00091 74 140 0.0081 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00091 339 407 2.1E-5 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00091 618 684 2.1E-5 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 73 203 5.9E-11 T 14-10-2018 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 61 184 5.76E-12 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55073 997 1154 6.98E-42 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF13426 PAS domain 629 730 1.1E-8 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF13426 PAS domain 878 979 1.0E-15 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF13426 PAS domain 88 187 6.0E-4 T 14-10-2018 IPR000014 PAS domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00267 981 1153 1.4E-54 T 14-10-2018 IPR000160 GGDEF domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.70.270 991 1166 1.2E-51 T 14-10-2018 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF00990 Diguanylate cyclase, GGDEF domain 992 1146 4.2E-43 T 14-10-2018 IPR000160 GGDEF domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.20.20.450 1167 1415 2.0E-99 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 988 1149 6.6E-37 T 14-10-2018 IPR000160 GGDEF domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF00563 EAL domain 1171 1404 7.0E-72 T 14-10-2018 IPR001633 EAL domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 606 729 4.03E-18 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 872 979 5.23E-28 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF141868 1169 1416 3.14E-87 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 728 857 2.79E-19 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00052 1163 1409 9.8E-114 T 14-10-2018 IPR001633 EAL domain Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 329 459 3.1E-23 T 14-10-2018 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00086 690 731 0.0084 T 14-10-2018 IPR001610 PAC motif Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00086 939 981 1.1E-5 T 14-10-2018 IPR001610 PAC motif Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00086 817 859 2.0E-5 T 14-10-2018 IPR001610 PAC motif Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SMART SM00086 419 461 0.018 T 14-10-2018 IPR001610 PAC motif Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55785 344 464 2.09E-20 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF08447 PAS fold 766 853 2.9E-14 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Pfam PF08447 PAS fold 362 453 5.1E-12 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 Gene3D G3DSA:3.30.450.20 617 734 1.6E-26 T 14-10-2018 Thimo_2815 275964003fe499c939ffe17b2ed00d84 1429 SUPERFAMILY SSF55781 455 599 2.81E-7 T 14-10-2018 Thimo_0853 c019590635efd78f8a0836e770f81b44 531 SUPERFAMILY SSF55073 370 524 5.65E-48 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_0853 c019590635efd78f8a0836e770f81b44 531 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 521 7.1E-45 T 14-10-2018 IPR000160 GGDEF domain Thimo_0853 c019590635efd78f8a0836e770f81b44 531 SUPERFAMILY SSF103190 213 319 8.63E-23 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_0853 c019590635efd78f8a0836e770f81b44 531 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 361 525 1.2E-48 T 14-10-2018 IPR000160 GGDEF domain Thimo_0853 c019590635efd78f8a0836e770f81b44 531 Gene3D G3DSA:3.30.450.20 211 284 8.2E-13 T 14-10-2018 Thimo_0853 c019590635efd78f8a0836e770f81b44 531 SUPERFAMILY SSF103190 35 204 4.51E-45 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_0853 c019590635efd78f8a0836e770f81b44 531 Gene3D G3DSA:3.30.450.20 72 206 8.2E-40 T 14-10-2018 Thimo_0853 c019590635efd78f8a0836e770f81b44 531 SMART SM00267 354 525 2.9E-56 T 14-10-2018 IPR000160 GGDEF domain Thimo_0853 c019590635efd78f8a0836e770f81b44 531 Gene3D G3DSA:3.30.70.270 359 529 4.7E-56 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF81665 7 886 1.05E-95 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 Pfam PF00122 E1-E2 ATPase 106 310 1.2E-41 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF56784 331 720 6.87E-46 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 TIGRFAM TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 7 879 1.0E-184 T 14-10-2018 IPR006408 P-type ATPase, subfamily IIB GO:0005388|GO:0005524|GO:0016020|GO:0070588 Reactome: R-HSA-418359|Reactome: R-HSA-5578775|Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 151 165 8.3E-34 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 536 546 8.3E-34 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 618 637 8.3E-34 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 653 8.3E-34 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 333 347 8.3E-34 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 514 525 8.3E-34 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 Pfam PF00690 Cation transporter/ATPase, N-terminus 7 55 4.4E-11 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 335 341 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 73 168 8.1E-20 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 581 699 5.8E-28 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 Pfam PF00689 Cation transporting ATPase, C-terminus 702 881 8.4E-37 T 14-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:3.40.1110.10 343 521 2.4E-191 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF81660 340 518 1.28E-22 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:1.20.1110.10 39 879 2.4E-191 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 SMART SM00831 7 61 2.0E-4 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 Pfam PF00702 haloacid dehalogenase-like hydrolase 330 632 1.1E-16 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 476 494 4.3E-15 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 649 674 4.3E-15 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 618 634 4.3E-15 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:2.70.150.10 7 216 2.4E-191 T 14-10-2018 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 SUPERFAMILY SSF81653 107 211 8.89E-26 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Thimo_0696 42c37e08cc7e6825332311b4af0eb7ec 894 Gene3D G3DSA:3.40.50.1000 330 662 2.4E-191 T 14-10-2018 IPR023214 HAD superfamily Thimo_3629 eda19a6e739234571b824c65ee07e129 271 Pfam PF06827 Zinc finger found in FPG and IleRS 243 270 6.1E-9 T 14-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 SMART SM01232 131 223 3.6E-45 T 14-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 271 42.134 T 14-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 5.7E-30 T 14-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 ProSitePatterns PS01242 Zinc finger FPG-type signature. 246 270 - T 14-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 SMART SM00898 2 116 4.0E-46 T 14-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 SUPERFAMILY SSF46946 132 224 1.38E-27 T 14-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 SUPERFAMILY SSF57716 219 270 5.42E-16 T 14-10-2018 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 Gene3D G3DSA:3.20.190.10 2 130 5.6E-36 T 14-10-2018 IPR035937 MutM-like, N-terminal Thimo_3629 eda19a6e739234571b824c65ee07e129 271 SUPERFAMILY SSF81624 2 136 2.22E-38 T 14-10-2018 IPR035937 MutM-like, N-terminal Thimo_3629 eda19a6e739234571b824c65ee07e129 271 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 131 220 8.2E-21 T 14-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 270 2.0E-83 T 14-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 Thimo_3629 eda19a6e739234571b824c65ee07e129 271 Gene3D G3DSA:1.10.8.50 141 271 2.7E-41 T 14-10-2018 Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 Gene3D G3DSA:3.40.50.300 248 443 3.9E-26 T 14-10-2018 Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 Pfam PF04851 Type III restriction enzyme, res subunit 254 421 4.0E-17 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 Gene3D G3DSA:3.40.50.300 444 657 4.8E-37 T 14-10-2018 Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 SMART SM00490 554 636 1.5E-7 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 Gene3D G3DSA:3.30.870.10 74 206 7.6E-6 T 14-10-2018 Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 Pfam PF00271 Helicase conserved C-terminal domain 514 635 2.0E-10 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 Pfam PF13091 PLD-like domain 39 201 1.2E-7 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 SUPERFAMILY SSF52540 270 645 1.55E-28 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2721 9dec618400cc54f1e7a3849347d1f665 707 SMART SM00487 252 459 4.4E-14 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 PIRSF PIRSF003095 1 432 1.1E-120 T 14-10-2018 IPR005215 Trigger factor GO:0015031 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 SUPERFAMILY SSF54534 92 242 5.5E-30 T 14-10-2018 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 4.7E-39 T 14-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 Hamap MF_00303 Trigger factor [tig]. 1 416 20.655 T 14-10-2018 IPR005215 Trigger factor GO:0015031 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 Gene3D G3DSA:3.10.50.40 150 246 1.3E-95 T 14-10-2018 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 229 2.5E-11 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 TIGRFAM TIGR00115 tig: trigger factor 11 410 3.9E-129 T 14-10-2018 IPR005215 Trigger factor GO:0015031 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 Gene3D G3DSA:3.30.70.1050 1 115 6.3E-35 T 14-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 Gene3D G3DSA:1.10.3120.10 116 413 1.3E-95 T 14-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 SUPERFAMILY SSF109998 248 426 6.93E-42 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 410 4.3E-33 T 14-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Thimo_0429 a9994d73ffc65990ab47919fe22658af 434 SUPERFAMILY SSF102735 1 131 4.19E-35 T 14-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 SUPERFAMILY SSF52540 27 382 2.24E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 Pfam PF08494 DEAD/H associated 638 825 7.8E-65 T 14-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 Pfam PF00270 DEAD/DEAH box helicase 18 199 3.6E-25 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 SMART SM00487 13 228 5.2E-33 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 SMART SM00490 298 378 4.3E-13 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 Gene3D G3DSA:3.40.50.300 4 217 4.1E-54 T 14-10-2018 Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 Pfam PF00271 Helicase conserved C-terminal domain 276 378 3.5E-14 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 SMART SM00382 30 220 0.0081 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1592 b2391fecee599bebe5a871bab3b72957 1476 Gene3D G3DSA:3.40.50.300 263 392 1.3E-23 T 14-10-2018 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 SUPERFAMILY SSF82679 3 114 5.89E-40 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 SUPERFAMILY SSF50104 121 176 3.16E-18 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 3.8E-66 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Gene3D G3DSA:2.30.30.30 120 176 2.4E-24 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 SMART SM00738 2 111 3.1E-48 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Pfam PF02357 Transcription termination factor nusG 3 108 2.1E-26 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Gene3D G3DSA:3.30.70.940 1 119 9.7E-47 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Pfam PF00467 KOW motif 126 156 1.0E-8 T 14-10-2018 IPR005824 KOW Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 14-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 24.818 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 SMART SM00739 123 150 7.7E-6 T 14-10-2018 IPR005824 KOW Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 5.0E-19 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 5.0E-19 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Thimo_2872 5b0d437ffa0ce1c70f7d6883f5aafc4a 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 5.0E-19 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 SMART SM01403 7 101 2.4E-55 T 14-10-2018 IPR027486 Ribosomal protein S10 domain Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.2E-34 T 14-10-2018 IPR027486 Ribosomal protein S10 domain Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.393 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 Gene3D G3DSA:3.30.70.600 1 103 3.5E-37 T 14-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 6.1E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 6.1E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 6.1E-18 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 SUPERFAMILY SSF54999 5 101 2.75E-36 T 14-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Thimo_2861 cbec4611463e33949daef5ddf46bbb43 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.7E-45 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2783 d802b6a964b0fb0a8f9d460502e50514 293 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 5 280 4.7E-62 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Thimo_2783 d802b6a964b0fb0a8f9d460502e50514 293 Pfam PF04085 rod shape-determining protein MreC 126 269 1.6E-31 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Thimo_2783 d802b6a964b0fb0a8f9d460502e50514 293 Gene3D G3DSA:2.40.10.340 121 267 1.4E-27 T 14-10-2018 Thimo_2783 d802b6a964b0fb0a8f9d460502e50514 293 Gene3D G3DSA:2.40.10.350 180 257 1.4E-27 T 14-10-2018 Thimo_2783 d802b6a964b0fb0a8f9d460502e50514 293 PIRSF PIRSF038471 2 282 1.6E-73 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Thimo_2842 9bd26dcf65df43982e6cb0e79c8fdef0 58 SUPERFAMILY SSF55129 1 56 4.58E-19 T 14-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Thimo_2842 9bd26dcf65df43982e6cb0e79c8fdef0 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 56 17.998 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2842 9bd26dcf65df43982e6cb0e79c8fdef0 58 Pfam PF00327 Ribosomal protein L30p/L7e 3 52 2.9E-17 T 14-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Thimo_2842 9bd26dcf65df43982e6cb0e79c8fdef0 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 2 55 9.1E-21 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2842 9bd26dcf65df43982e6cb0e79c8fdef0 58 Gene3D G3DSA:3.30.1390.20 2 56 3.3E-23 T 14-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Thimo_2842 9bd26dcf65df43982e6cb0e79c8fdef0 58 PIRSF PIRSF002211 1 58 6.6E-24 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2846 4a77fd902bcf360d007c2bf62dc37d9d 131 Gene3D G3DSA:3.30.1370.30 2 73 1.4E-24 T 14-10-2018 Thimo_2846 4a77fd902bcf360d007c2bf62dc37d9d 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2846 4a77fd902bcf360d007c2bf62dc37d9d 131 Pfam PF00410 Ribosomal protein S8 5 130 1.7E-44 T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2846 4a77fd902bcf360d007c2bf62dc37d9d 131 Gene3D G3DSA:3.30.1490.10 74 131 1.3E-22 T 14-10-2018 Thimo_2846 4a77fd902bcf360d007c2bf62dc37d9d 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 30.222 T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2846 4a77fd902bcf360d007c2bf62dc37d9d 131 SUPERFAMILY SSF56047 2 130 3.4E-45 T 14-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_3610 7e778e77da248732d028489500cfd959 178 Gene3D G3DSA:3.30.420.10 11 162 4.0E-44 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_3610 7e778e77da248732d028489500cfd959 178 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 11 161 1.6E-45 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Thimo_3610 7e778e77da248732d028489500cfd959 178 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 120 154 - T 14-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 Thimo_3610 7e778e77da248732d028489500cfd959 178 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 9 160 43.082 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Thimo_3610 7e778e77da248732d028489500cfd959 178 SUPERFAMILY SSF53098 10 163 1.01E-45 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_3610 7e778e77da248732d028489500cfd959 178 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 11 157 6.7E-48 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Thimo_3610 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 90 106 2.8E-31 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Thimo_3610 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 12 25 2.8E-31 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Thimo_3610 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 145 157 2.8E-31 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Thimo_3610 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 68 84 2.8E-31 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Thimo_3610 7e778e77da248732d028489500cfd959 178 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 114 133 2.8E-31 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Thimo_3693 c20a17c7139ee5a4d7a0f19ecdc3191a 190 Gene3D G3DSA:2.60.60.30 19 186 2.2E-72 T 14-10-2018 Thimo_3693 c20a17c7139ee5a4d7a0f19ecdc3191a 190 Pfam PF02342 TerD domain 1 187 1.2E-82 T 14-10-2018 IPR003325 TerD domain Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 Gene3D G3DSA:3.40.710.10 75 736 1.6E-258 T 14-10-2018 Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 Gene3D G3DSA:3.30.2060.10 83 172 1.6E-258 T 14-10-2018 Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 SUPERFAMILY SSF56601 334 773 7.7E-117 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 Pfam PF00912 Transglycosylase 174 352 4.2E-60 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 185 723 3.5E-155 T 14-10-2018 Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 SUPERFAMILY SSF53955 171 374 1.18E-68 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 Gene3D G3DSA:1.10.3810.10 173 375 1.6E-258 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 42 764 8.4E-268 T 14-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 PIRSF PIRSF002799 6 794 4.0E-299 T 14-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 Pfam PF14814 Bifunctional transglycosylase second domain 85 169 1.8E-24 T 14-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2101 2f9cf312c73550e0c0a46da012f4c133 811 Pfam PF00905 Penicillin binding protein transpeptidase domain 448 705 1.5E-21 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.70.1430 38 816 0.0 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1029 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82714 721 808 1.28E-24 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.2090.10 720 808 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82693 135 330 3.49E-26 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.70.1430 566 667 0.0 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82693 38 130 4.45E-26 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82714 182 272 1.01E-22 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Pfam PF00873 AcrB/AcrD/AcrF family 1 1025 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:1.20.1640.10 8 511 0.0 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.1E-107 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82866 805 1027 3.27E-39 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82693 564 668 1.31E-30 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 SUPERFAMILY SSF82866 296 497 4.19E-49 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:1.20.1640.10 512 1021 0.0 T 14-10-2018 Thimo_0850 2a3c869287852141d42c634842b3eef1 1032 Gene3D G3DSA:3.30.70.1440 668 864 0.0 T 14-10-2018 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Pfam PF00009 Elongation factor Tu GTP binding domain 52 230 8.7E-50 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 SMART SM00838 446 534 0.0023 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 54 222 9.6E-19 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 PRINTS PR00315 GTP-binding elongation factor signature 175 184 1.2E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 PRINTS PR00315 GTP-binding elongation factor signature 55 68 1.2E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 PRINTS PR00315 GTP-binding elongation factor signature 123 133 1.2E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 PRINTS PR00315 GTP-binding elongation factor signature 98 106 1.2E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 PRINTS PR00315 GTP-binding elongation factor signature 139 150 1.2E-13 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 SUPERFAMILY SSF54980 447 541 4.36E-23 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Gene3D G3DSA:3.30.70.870 334 415 2.0E-35 T 14-10-2018 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 TIGRFAM TIGR01393 lepA: elongation factor 4 52 643 4.7E-291 T 14-10-2018 IPR006297 Elongation factor 4 GO:0005525 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Gene3D G3DSA:3.30.70.3380 416 526 1.9E-39 T 14-10-2018 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 SUPERFAMILY SSF54980 340 418 1.69E-17 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 91 106 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 SUPERFAMILY SSF52540 47 279 4.5E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Gene3D G3DSA:3.40.50.300 49 234 3.1E-69 T 14-10-2018 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Pfam PF00679 Elongation factor G C-terminus 447 532 1.0E-19 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Pfam PF06421 GTP-binding protein LepA C-terminus 535 641 1.6E-50 T 14-10-2018 IPR013842 GTP-binding protein LepA, C-terminal Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Gene3D G3DSA:3.30.70.2570 527 601 1.2E-34 T 14-10-2018 IPR038363 LepA, C-terminal domain superfamily Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Gene3D G3DSA:2.40.30.10 235 333 2.0E-30 T 14-10-2018 Thimo_1827 76bf990d0e8478e8802d6f0cc0cced68 646 Hamap MF_00071 Elongation factor 4 [lepA]. 47 645 290.748 T 14-10-2018 IPR006297 Elongation factor 4 GO:0005525 Thimo_0222 9a6ef13b23832080513963e2d9fa231d 254 Gene3D G3DSA:1.25.40.20 1 232 2.7E-42 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Thimo_0222 9a6ef13b23832080513963e2d9fa231d 254 SUPERFAMILY SSF48403 3 214 1.12E-33 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Thimo_0222 9a6ef13b23832080513963e2d9fa231d 254 SMART SM00248 61 90 2.1 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_0222 9a6ef13b23832080513963e2d9fa231d 254 SMART SM00248 25 54 5.8E-4 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_0222 9a6ef13b23832080513963e2d9fa231d 254 SMART SM00248 191 220 320.0 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_0222 9a6ef13b23832080513963e2d9fa231d 254 SMART SM00248 158 187 2300.0 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_0222 9a6ef13b23832080513963e2d9fa231d 254 SMART SM00248 125 154 4.1 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_0222 9a6ef13b23832080513963e2d9fa231d 254 Pfam PF12796 Ankyrin repeats (3 copies) 5 89 3.8E-8 T 14-10-2018 IPR020683 Ankyrin repeat-containing domain Thimo_3316 46d8962ce62288ce41614de4af773079 145 Pfam PF13279 Thioesterase-like superfamily 13 133 1.9E-10 T 14-10-2018 Thimo_3316 46d8962ce62288ce41614de4af773079 145 SUPERFAMILY SSF54637 6 134 1.15E-30 T 14-10-2018 IPR029069 HotDog domain superfamily Thimo_3316 46d8962ce62288ce41614de4af773079 145 Gene3D G3DSA:3.10.129.10 3 137 1.2E-31 T 14-10-2018 Thimo_1552 b55faf2ea9ee40b9c9c5a72319151907 54 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 4.3E-15 T 14-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Thimo_1552 b55faf2ea9ee40b9c9c5a72319151907 54 PIRSF PIRSF036466 1 54 2.5E-21 T 14-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Thimo_1552 b55faf2ea9ee40b9c9c5a72319151907 54 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 52 19.824 T 14-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 Gene3D G3DSA:2.40.50.140 4 67 4.0E-30 T 14-10-2018 Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.5E-28 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 PIRSF PIRSF002599 1 69 1.6E-23 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 SUPERFAMILY SSF50249 4 68 7.47E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 SMART SM00357 6 69 9.0E-30 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 14-10-2018 IPR019844 Cold-shock conserved site Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 PRINTS PR00050 Cold shock protein signature 7 22 2.3E-16 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 PRINTS PR00050 Cold shock protein signature 42 60 2.3E-16 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_3320 54ea030f36805bff84d76aaafd1b945a 69 PRINTS PR00050 Cold shock protein signature 27 36 2.3E-16 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_2795 5ef56a669b4b8303df5a256561f4d9b8 397 Pfam PF07687 Peptidase dimerisation domain 179 287 2.3E-20 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Thimo_2795 5ef56a669b4b8303df5a256561f4d9b8 397 Gene3D G3DSA:3.40.630.10 30 366 5.9E-80 T 14-10-2018 Thimo_2795 5ef56a669b4b8303df5a256561f4d9b8 397 Gene3D G3DSA:3.30.70.360 181 296 5.9E-80 T 14-10-2018 Thimo_2795 5ef56a669b4b8303df5a256561f4d9b8 397 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 11 376 9.3E-113 T 14-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 Thimo_2795 5ef56a669b4b8303df5a256561f4d9b8 397 Pfam PF01546 Peptidase family M20/M25/M40 77 379 4.3E-31 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Thimo_2795 5ef56a669b4b8303df5a256561f4d9b8 397 SUPERFAMILY SSF55031 181 295 1.5E-21 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Thimo_2795 5ef56a669b4b8303df5a256561f4d9b8 397 SUPERFAMILY SSF53187 6 382 5.71E-57 T 14-10-2018 Thimo_2795 5ef56a669b4b8303df5a256561f4d9b8 397 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 110 146 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 SUPERFAMILY SSF56235 2 257 7.03E-71 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 Gene3D G3DSA:3.60.20.10 2 412 1.3E-149 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 PIRSF PIRSF000485 1 482 8.0E-159 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 Pfam PF13522 Glutamine amidotransferase domain 61 208 3.3E-15 T 14-10-2018 Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 Pfam PF00156 Phosphoribosyl transferase domain 268 393 6.2E-8 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 465 4.7E-154 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 465 44.344 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 Gene3D G3DSA:3.40.50.2020 277 441 1.3E-149 T 14-10-2018 Thimo_2643 bb2f03527e9ec1ec38ca0d5aa1477345 504 SUPERFAMILY SSF53271 250 484 3.73E-71 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 14-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 5.7E-24 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 Hamap MF_00141 Elongation factor P [efp]. 3 187 50.509 T 14-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 PIRSF PIRSF005901 2 188 5.1E-71 T 14-10-2018 IPR020599 Translation elongation factor P/YeiP Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 SMART SM00841 131 186 1.5E-33 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 Gene3D G3DSA:2.40.50.140 130 187 8.0E-28 T 14-10-2018 Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 SMART SM01185 69 123 2.4E-27 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 SUPERFAMILY SSF50104 2 63 1.05E-20 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 Pfam PF09285 Elongation factor P, C-terminal 131 186 1.4E-26 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 SUPERFAMILY SSF50249 69 128 8.14E-18 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 SUPERFAMILY SSF50249 130 187 1.1E-18 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 TIGRFAM TIGR00038 efp: translation elongation factor P 4 187 3.3E-81 T 14-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 62 1.5E-27 T 14-10-2018 IPR013185 Translation elongation factor, KOW-like Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 Gene3D G3DSA:2.30.30.30 1 65 5.3E-29 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 Thimo_2222 d71924a7e99820bf5fa4c2cc97193fdd 190 Gene3D G3DSA:2.40.50.140 66 127 2.9E-29 T 14-10-2018 Thimo_2700 24e5ba6683519f74b1f0d3c2b812e508 657 SMART SM00642 99 556 1.6E-24 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_2700 24e5ba6683519f74b1f0d3c2b812e508 657 Pfam PF00128 Alpha amylase, catalytic domain 108 347 6.7E-40 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_2700 24e5ba6683519f74b1f0d3c2b812e508 657 SUPERFAMILY SSF51445 21 563 1.67E-113 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_2700 24e5ba6683519f74b1f0d3c2b812e508 657 SUPERFAMILY SSF51011 571 648 1.68E-9 T 14-10-2018 Thimo_2700 24e5ba6683519f74b1f0d3c2b812e508 657 Gene3D G3DSA:1.10.1740.10 5 94 1.4E-19 T 14-10-2018 Thimo_2700 24e5ba6683519f74b1f0d3c2b812e508 657 Gene3D G3DSA:3.90.400.10 184 259 2.9E-190 T 14-10-2018 Thimo_2700 24e5ba6683519f74b1f0d3c2b812e508 657 Gene3D G3DSA:3.20.20.80 97 558 2.9E-190 T 14-10-2018 Thimo_2700 24e5ba6683519f74b1f0d3c2b812e508 657 Gene3D G3DSA:2.60.40.1180 570 649 8.8E-9 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta Thimo_0780 74c245fff25002291f24c48d6ddfa5be 174 Pfam PF06841 T4-like virus tail tube protein gp19 15 157 1.2E-45 T 14-10-2018 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 Thimo_0780 74c245fff25002291f24c48d6ddfa5be 174 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 12 158 5.7E-46 T 14-10-2018 IPR011747 Conserved hypothetical protein CHP02241 Thimo_2294 7e177dd8bc0bb172c43cbaa589cfa3db 340 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 13 33 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_2294 7e177dd8bc0bb172c43cbaa589cfa3db 340 Pfam PF00114 Pilin (bacterial filament) 43 147 7.3E-19 T 14-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 Thimo_2294 7e177dd8bc0bb172c43cbaa589cfa3db 340 SUPERFAMILY SSF54523 36 148 2.83E-25 T 14-10-2018 Thimo_2294 7e177dd8bc0bb172c43cbaa589cfa3db 340 Gene3D G3DSA:3.30.700.10 15 152 1.8E-39 T 14-10-2018 Thimo_2294 7e177dd8bc0bb172c43cbaa589cfa3db 340 Pfam PF07963 Prokaryotic N-terminal methylation motif 14 34 3.4E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_2294 7e177dd8bc0bb172c43cbaa589cfa3db 340 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 35 2.0E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Pfam PF00873 AcrB/AcrD/AcrF family 39 1089 8.9E-151 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.70.1430 64 867 5.3E-226 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.70.1440 719 937 5.3E-226 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82714 770 854 3.4E-11 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82693 64 158 4.88E-22 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82866 919 1089 6.02E-38 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82714 214 296 1.44E-14 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.70.1430 610 718 5.3E-226 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82693 606 720 2.27E-11 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 429 453 1.6E-31 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 374 397 1.6E-31 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 508 531 1.6E-31 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 62 80 1.6E-31 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 483 506 1.6E-31 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 401 422 1.6E-31 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 PRINTS PR00702 Acriflavin resistance protein family signature 593 610 1.6E-31 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82866 335 531 1.7E-35 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:1.20.1640.10 551 1089 5.3E-226 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.70.1320 158 368 5.3E-226 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 SUPERFAMILY SSF82693 181 365 9.42E-5 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:1.20.1640.10 41 550 5.3E-226 T 14-10-2018 Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.2090.10 210 301 5.3E-226 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2230 567fc6bbb4408a24a819fb2820cfd902 1344 Gene3D G3DSA:3.30.2090.10 769 859 5.3E-226 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 SMART SM00941 431 498 2.7E-19 T 14-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 203 218 - T 14-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 Pfam PF02885 Glycosyl transferase family, helical bundle domain 100 160 8.1E-9 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 SUPERFAMILY SSF52418 163 413 6.54E-64 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 Gene3D G3DSA:1.20.970.50 102 334 4.8E-102 T 14-10-2018 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 Hamap MF_00703 Putative thymidine phosphorylase. 6 502 57.451 T 14-10-2018 IPR028579 Putative thymidine phosphorylase KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 Gene3D G3DSA:3.90.1170.30 421 499 5.3E-20 T 14-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 Gene3D G3DSA:3.40.1030.10 160 410 4.8E-102 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 PIRSF PIRSF000478 94 508 1.3E-119 T 14-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 431 485 7.9E-11 T 14-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 SUPERFAMILY SSF54680 419 492 5.36E-16 T 14-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 Pfam PF00591 Glycosyl transferase family, a/b domain 169 235 2.0E-7 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 TIGRFAM TIGR02645 ARCH_P_rylase: putative thymidine phosphorylase 7 499 4.3E-177 T 14-10-2018 IPR013466 Thymidine phosphorylase/AMP phosphorylase GO:0016763 Thimo_3607 629a4095b40caa344cea6f6aeaeacfd7 512 SUPERFAMILY SSF47648 97 163 7.06E-13 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_0954 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 SUPERFAMILY SSF52833 5 90 4.85E-21 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0954 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 Gene3D G3DSA:3.40.30.10 2 92 4.0E-30 T 14-10-2018 Thimo_0954 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 SMART SM01248 7 90 6.6E-35 T 14-10-2018 IPR011649 KaiB domain GO:0048511 Thimo_0954 9cc9ca30181069a7e8cecfdbbdf2a2e0 93 Pfam PF07689 KaiB domain 8 89 1.9E-21 T 14-10-2018 IPR011649 KaiB domain GO:0048511 Thimo_2951 9d5dbfb641da703a2138b15e11c10942 84 Gene3D G3DSA:2.40.50.220 1 84 5.2E-30 T 14-10-2018 IPR036677 EutN/Ccml superfamily Thimo_2951 9d5dbfb641da703a2138b15e11c10942 84 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 10 78 1.0E-28 T 14-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Thimo_2951 9d5dbfb641da703a2138b15e11c10942 84 TIGRFAM TIGR02703 carboxysome_A: carboxysome peptide A 1 78 2.0E-43 T 14-10-2018 IPR014076 Carboxysome peptide A Thimo_2951 9d5dbfb641da703a2138b15e11c10942 84 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 76 6.0E-20 T 14-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Thimo_2951 9d5dbfb641da703a2138b15e11c10942 84 SUPERFAMILY SSF159133 1 81 6.02E-23 T 14-10-2018 IPR036677 EutN/Ccml superfamily Thimo_1635 b23c14d937b19e110d3f96d8140f1f78 237 Gene3D G3DSA:3.40.50.300 2 163 2.2E-34 T 14-10-2018 Thimo_1635 b23c14d937b19e110d3f96d8140f1f78 237 Gene3D G3DSA:1.10.8.60 166 231 1.0E-19 T 14-10-2018 Thimo_1635 b23c14d937b19e110d3f96d8140f1f78 237 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 7 229 8.1E-74 T 14-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 Thimo_1635 b23c14d937b19e110d3f96d8140f1f78 237 SUPERFAMILY SSF52540 39 210 1.47E-25 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1635 b23c14d937b19e110d3f96d8140f1f78 237 Pfam PF00308 Bacterial dnaA protein 19 70 7.6E-7 T 14-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Thimo_1635 b23c14d937b19e110d3f96d8140f1f78 237 Pfam PF00308 Bacterial dnaA protein 95 210 1.3E-10 T 14-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 SMART SM00382 90 383 3.8E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 11 1298 0.0 T 14-10-2018 IPR010222 RNA helicase HrpA GO:0004004 Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 Pfam PF00271 Helicase conserved C-terminal domain 281 402 4.4E-11 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 Gene3D G3DSA:3.40.50.300 49 250 2.4E-73 T 14-10-2018 Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 Gene3D G3DSA:1.20.120.1080 447 551 1.2E-19 T 14-10-2018 Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 Pfam PF11898 Domain of unknown function (DUF3418) 704 1298 2.7E-213 T 14-10-2018 IPR024590 RNA helicase HrpA, C-terminal Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 Gene3D G3DSA:3.40.50.300 251 420 3.7E-57 T 14-10-2018 Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 Pfam PF04408 Helicase associated domain (HA2) 466 551 3.9E-20 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 616 690 4.1E-17 T 14-10-2018 IPR011709 Domain of unknown function DUF1605 Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 SUPERFAMILY SSF52540 72 608 1.64E-102 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 SMART SM00487 73 257 9.8E-26 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 SMART SM00490 303 403 1.2E-14 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_3171 41adb82b8f6d70204bb741a4aeb385cb 1302 SMART SM00847 463 553 5.2E-34 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 Pfam PF00175 Oxidoreductase NAD-binding domain 116 216 3.5E-21 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 Gene3D G3DSA:3.40.50.80 104 232 4.9E-29 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 SUPERFAMILY SSF52343 110 250 2.1E-35 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 164 2.3E-7 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 141 150 2.3E-7 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 2.3E-7 T 14-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 SUPERFAMILY SSF63380 8 105 1.24E-14 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 PIRSF PIRSF006816 8 272 1.5E-65 T 14-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 235 266 1.7E-7 T 14-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 Gene3D G3DSA:2.40.30.10 9 103 2.6E-12 T 14-10-2018 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00406 Cytochrome B5 reductase signature 115 134 3.9E-6 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00406 Cytochrome B5 reductase signature 203 211 3.9E-6 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Thimo_0257 06eb5463a2dc117e607d0d37fffe167d 274 PRINTS PR00406 Cytochrome B5 reductase signature 91 105 3.9E-6 T 14-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 Thimo_3262 ea543ee08807cb58046d765490c57148 278 Gene3D G3DSA:3.60.21.10 1 267 3.0E-74 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Thimo_3262 ea543ee08807cb58046d765490c57148 278 PIRSF PIRSF000903 1 271 1.7E-108 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Thimo_3262 ea543ee08807cb58046d765490c57148 278 Pfam PF00149 Calcineurin-like phosphoesterase 4 126 4.8E-13 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Thimo_3262 ea543ee08807cb58046d765490c57148 278 SUPERFAMILY SSF56300 1 271 1.57E-52 T 14-10-2018 Thimo_3262 ea543ee08807cb58046d765490c57148 278 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 261 4.5E-93 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Thimo_3262 ea543ee08807cb58046d765490c57148 278 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 270 45.666 T 14-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Thimo_1429 60f6e06182c15e91256429c7a5cc13f2 120 Gene3D G3DSA:1.10.260.40 2 79 1.0E-13 T 14-10-2018 Thimo_1429 60f6e06182c15e91256429c7a5cc13f2 120 SUPERFAMILY SSF47413 10 79 9.57E-11 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_1429 60f6e06182c15e91256429c7a5cc13f2 120 SMART SM00530 15 73 5.3E-6 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_1429 60f6e06182c15e91256429c7a5cc13f2 120 Pfam PF13560 Helix-turn-helix domain 11 66 7.4E-9 T 14-10-2018 Thimo_0697 7d4a5ec4f986386ea2822e0e08e03b51 314 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 306 8.2E-85 T 14-10-2018 IPR007296 Domain of unknown function DUF403 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00532 6 450 9.8E-264 T 14-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF50249 320 402 1.71E-28 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00292 672 748 2.7E-13 T 14-10-2018 IPR001357 BRCT domain Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF47781 556 661 8.26E-15 T 14-10-2018 IPR010994 RuvA domain 2-like Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF14520 Helix-hairpin-helix domain 448 504 1.1E-6 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:1.10.150.20 434 507 3.7E-33 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:2.20.70.80 393 433 1.1E-15 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:1.10.150.20 580 664 3.6E-12 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:1.10.150.20 508 575 1.6E-16 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:1.10.287.610 2 73 2.8E-30 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:3.40.50.10190 669 748 1.7E-22 T 14-10-2018 IPR036420 BRCT domain superfamily Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:2.40.50.140 320 392 3.2E-33 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Hamap MF_01588 DNA ligase [ligA]. 5 745 52.9 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00278 514 533 210.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00278 482 501 0.23 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00278 448 467 44.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SMART SM00278 549 568 33.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 8 320 8.2E-128 T 14-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 409 436 2.9E-10 T 14-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 117 146 - T 14-10-2018 IPR018239 NAD-dependent DNA ligase, active site Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 PIRSF PIRSF001604 1 577 7.7E-214 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 PIRSF PIRSF001604 577 748 3.8E-27 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 324 400 8.8E-36 T 14-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF52113 670 746 3.18E-17 T 14-10-2018 IPR036420 BRCT domain superfamily Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF47781 406 571 1.93E-54 T 14-10-2018 IPR010994 RuvA domain 2-like Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 674 744 8.8E-8 T 14-10-2018 IPR001357 BRCT domain Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Gene3D G3DSA:3.30.470.90 74 319 2.4E-97 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 Pfam PF12826 Helix-hairpin-helix motif 512 565 3.2E-14 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 14 571 3.6E-222 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 SUPERFAMILY SSF56091 5 318 2.34E-118 T 14-10-2018 Thimo_0917 9caa508c220e8e7e9b17188d6b0727cb 748 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 333 348 - T 14-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site Thimo_2056 baea86574e12fe81ed8d3e9516f870b8 353 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 333 4.9E-65 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_2056 baea86574e12fe81ed8d3e9516f870b8 353 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 264 2.1E-22 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_2056 baea86574e12fe81ed8d3e9516f870b8 353 Gene3D G3DSA:2.40.420.20 29 329 4.5E-67 T 14-10-2018 Thimo_2056 baea86574e12fe81ed8d3e9516f870b8 353 Gene3D G3DSA:2.40.50.100 52 192 4.5E-67 T 14-10-2018 Thimo_2056 baea86574e12fe81ed8d3e9516f870b8 353 SUPERFAMILY SSF111369 41 266 3.27E-29 T 14-10-2018 Thimo_2056 baea86574e12fe81ed8d3e9516f870b8 353 Gene3D G3DSA:2.40.30.170 40 270 4.5E-67 T 14-10-2018 Thimo_2056 baea86574e12fe81ed8d3e9516f870b8 353 Gene3D G3DSA:1.10.287.470 90 157 4.5E-67 T 14-10-2018 Thimo_1442 34b5f6fa0e1ff872403a0e0f6476d451 251 Gene3D G3DSA:3.40.50.1820 2 250 6.2E-59 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1442 34b5f6fa0e1ff872403a0e0f6476d451 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 6.3E-9 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1442 34b5f6fa0e1ff872403a0e0f6476d451 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 6.3E-9 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1442 34b5f6fa0e1ff872403a0e0f6476d451 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 197 211 6.3E-9 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1442 34b5f6fa0e1ff872403a0e0f6476d451 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 6.3E-9 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1442 34b5f6fa0e1ff872403a0e0f6476d451 251 SUPERFAMILY SSF53474 3 250 1.0E-55 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1442 34b5f6fa0e1ff872403a0e0f6476d451 251 Pfam PF00561 alpha/beta hydrolase fold 20 140 4.2E-23 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0376 330d5e2bcfef07d34769207cd79da26e 128 SUPERFAMILY SSF51182 15 103 2.47E-21 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Thimo_0376 330d5e2bcfef07d34769207cd79da26e 128 Gene3D G3DSA:2.60.120.10 7 123 2.1E-37 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_0376 330d5e2bcfef07d34769207cd79da26e 128 Pfam PF07883 Cupin domain 32 100 4.4E-17 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13424 Tetratricopeptide repeat 459 538 3.3E-7 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 275 397 1.29E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 503 650 2.9E-17 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 360 502 2.8E-20 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 606 640 5.4E-4 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 654 688 3.3E-4 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 270 304 0.0086 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 702 736 5.4E-4 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 558 592 2.6E-4 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 414 448 3.8E-5 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 318 350 0.016 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Pfam PF13374 Tetratricopeptide repeat 366 400 6.2E-4 T 14-10-2018 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 224 359 4.5E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 367 760 7.91E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 556 589 100.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 508 541 180.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 748 781 37.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 700 733 56.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 364 397 120.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 460 493 32.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 652 685 45.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 316 349 190.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 412 445 32.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 268 301 220.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SMART SM00028 604 637 56.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 SUPERFAMILY SSF48452 415 681 3.07E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3471 6ccd9736aeea108cda36b4246159550f 806 Gene3D G3DSA:1.25.40.10 651 799 4.3E-17 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 SUPERFAMILY SSF52172 2 186 4.13E-47 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 Gene3D G3DSA:3.40.50.300 135 307 1.4E-46 T 14-10-2018 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 SMART SM00448 4 116 1.5E-40 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 Gene3D G3DSA:1.10.10.60 397 453 2.1E-15 T 14-10-2018 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 SUPERFAMILY SSF46689 350 449 5.82E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 Pfam PF00072 Response regulator receiver domain 6 116 8.1E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 SUPERFAMILY SSF52540 143 380 4.88E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 Pfam PF00158 Sigma-54 interaction domain 143 303 3.0E-43 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 Gene3D G3DSA:3.40.50.2300 2 134 4.5E-40 T 14-10-2018 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 Gene3D G3DSA:1.10.8.60 308 386 3.1E-20 T 14-10-2018 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 SMART SM00382 162 301 6.5E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 PRINTS PR00819 CbxX/CfqX superfamily signature 220 239 4.9E-6 T 14-10-2018 IPR000641 CbxX/CfqX GO:0005524 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 PRINTS PR00819 CbxX/CfqX superfamily signature 125 139 4.9E-6 T 14-10-2018 IPR000641 CbxX/CfqX GO:0005524 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 PRINTS PR00819 CbxX/CfqX superfamily signature 353 365 4.9E-6 T 14-10-2018 IPR000641 CbxX/CfqX GO:0005524 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 PRINTS PR00819 CbxX/CfqX superfamily signature 165 180 4.9E-6 T 14-10-2018 IPR000641 CbxX/CfqX GO:0005524 Thimo_1242 ddb2252c1b96f896df6d537dc1014bd9 455 Pfam PF02954 Bacterial regulatory protein, Fis family 407 445 2.5E-7 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0610 80e74c0ed348e620ac716c0e3140cf2b 435 SMART SM00220 19 290 5.7E-6 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_0610 80e74c0ed348e620ac716c0e3140cf2b 435 Pfam PF00069 Protein kinase domain 101 224 1.4E-14 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_0610 80e74c0ed348e620ac716c0e3140cf2b 435 SUPERFAMILY SSF56112 21 228 1.62E-25 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_0610 80e74c0ed348e620ac716c0e3140cf2b 435 Gene3D G3DSA:1.10.510.10 96 303 6.5E-18 T 14-10-2018 Thimo_1082 484f9f3e87d13a36cec9aa259e0fd63f 362 SUPERFAMILY SSF48019 211 332 4.76E-23 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Thimo_1082 484f9f3e87d13a36cec9aa259e0fd63f 362 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 217 324 1.7E-6 T 14-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1082 484f9f3e87d13a36cec9aa259e0fd63f 362 SUPERFAMILY SSF52540 1 209 7.01E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1082 484f9f3e87d13a36cec9aa259e0fd63f 362 Pfam PF06144 DNA polymerase III, delta subunit 20 189 1.3E-20 T 14-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 Thimo_1082 484f9f3e87d13a36cec9aa259e0fd63f 362 Gene3D G3DSA:1.20.272.10 213 336 1.5E-26 T 14-10-2018 Thimo_1082 484f9f3e87d13a36cec9aa259e0fd63f 362 Gene3D G3DSA:1.10.8.60 144 211 7.7E-20 T 14-10-2018 Thimo_1082 484f9f3e87d13a36cec9aa259e0fd63f 362 Gene3D G3DSA:3.40.50.300 1 138 4.7E-40 T 14-10-2018 Thimo_1082 484f9f3e87d13a36cec9aa259e0fd63f 362 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 325 8.8E-74 T 14-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 Thimo_0558 71044aacf8ae56d2d43adfaf460b4d3b 219 Pfam PF02660 Glycerol-3-phosphate acyltransferase 29 203 1.5E-49 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Thimo_0558 71044aacf8ae56d2d43adfaf460b4d3b 219 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 23 211 3.2E-57 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Thimo_0558 71044aacf8ae56d2d43adfaf460b4d3b 219 SMART SM01207 27 204 9.8E-78 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Thimo_0558 71044aacf8ae56d2d43adfaf460b4d3b 219 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 24 212 19.467 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Thimo_1679 dece8288ea677614cbd81e541ce10c4e 455 Pfam PF02347 Glycine cleavage system P-protein 3 441 1.3E-111 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Thimo_1679 dece8288ea677614cbd81e541ce10c4e 455 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 1 450 45.14 T 14-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 Thimo_1679 dece8288ea677614cbd81e541ce10c4e 455 PIRSF PIRSF006815 1 451 5.1E-157 T 14-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 Thimo_1679 dece8288ea677614cbd81e541ce10c4e 455 Gene3D G3DSA:3.90.1150.10 68 446 4.4E-143 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_1679 dece8288ea677614cbd81e541ce10c4e 455 Gene3D G3DSA:3.40.640.10 79 352 4.4E-143 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_1679 dece8288ea677614cbd81e541ce10c4e 455 SUPERFAMILY SSF53383 1 450 3.76E-111 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1482 0d736b962a867ee3bddbde8f32a1ef60 266 SMART SM00331 26 262 1.8E-20 T 14-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_1482 0d736b962a867ee3bddbde8f32a1ef60 266 Gene3D G3DSA:3.60.40.10 11 263 3.4E-59 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_1482 0d736b962a867ee3bddbde8f32a1ef60 266 Pfam PF13672 Protein phosphatase 2C 34 221 1.1E-15 T 14-10-2018 Thimo_1482 0d736b962a867ee3bddbde8f32a1ef60 266 SUPERFAMILY SSF81606 20 262 9.29E-55 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_1482 0d736b962a867ee3bddbde8f32a1ef60 266 SMART SM00332 9 260 1.5E-17 T 14-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_3071 b2e5c5dbd66956b8c39d4cd5dee85928 279 SUPERFAMILY SSF53448 1 251 1.41E-25 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3071 b2e5c5dbd66956b8c39d4cd5dee85928 279 Gene3D G3DSA:3.90.550.10 1 199 1.0E-21 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3071 b2e5c5dbd66956b8c39d4cd5dee85928 279 Pfam PF00535 Glycosyl transferase family 2 4 119 5.7E-14 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Thimo_0409 4421061dee8735341b99f09708b80bbd 199 SUPERFAMILY SSF55729 17 172 1.86E-13 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_0409 4421061dee8735341b99f09708b80bbd 199 Pfam PF00583 Acetyltransferase (GNAT) family 46 146 2.8E-5 T 14-10-2018 IPR000182 GNAT domain Thimo_0409 4421061dee8735341b99f09708b80bbd 199 Gene3D G3DSA:3.40.630.30 3 196 4.2E-11 T 14-10-2018 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 SUPERFAMILY SSF50249 1 105 4.57E-35 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 120 563 9.3E-110 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 Gene3D G3DSA:3.30.1360.30 275 425 5.4E-198 T 14-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 SUPERFAMILY SSF55261 293 424 7.03E-41 T 14-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 Gene3D G3DSA:2.40.50.140 1 106 9.8E-37 T 14-10-2018 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 589 34.549 T 14-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 SUPERFAMILY SSF55681 116 588 4.61E-110 T 14-10-2018 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 210 223 1.9E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 193 205 1.9E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 479 495 1.9E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 523 537 1.9E-26 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 1.4E-18 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 587 8.7E-250 T 14-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 Pfam PF02938 GAD domain 311 411 5.1E-27 T 14-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 Thimo_3047 efb568fbca2dd08ba272ad779506d3b8 592 Gene3D G3DSA:3.30.930.10 119 586 5.4E-198 T 14-10-2018 Thimo_1739 8f6ae266ac2bdea6b868c28e5350456e 203 Gene3D G3DSA:3.30.70.1070 122 202 4.0E-15 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Thimo_1739 8f6ae266ac2bdea6b868c28e5350456e 203 Pfam PF05036 Sporulation related domain 128 201 8.0E-16 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 Thimo_1739 8f6ae266ac2bdea6b868c28e5350456e 203 SUPERFAMILY SSF110997 126 201 3.79E-17 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Thimo_2687 2a92fea9f0b52c17556514738d4c5d7d 1474 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1337 1427 1.1E-8 T 14-10-2018 Thimo_2687 2a92fea9f0b52c17556514738d4c5d7d 1474 Pfam PF16330 MukB hinge domain 642 800 4.7E-48 T 14-10-2018 IPR032520 MukB, hinge domain Thimo_2687 2a92fea9f0b52c17556514738d4c5d7d 1474 Pfam PF04310 MukB N-terminal 2 222 1.2E-87 T 14-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 Thimo_2687 2a92fea9f0b52c17556514738d4c5d7d 1474 Gene3D G3DSA:3.40.1140.10 1 222 1.4E-73 T 14-10-2018 Thimo_2687 2a92fea9f0b52c17556514738d4c5d7d 1474 Gene3D G3DSA:1.20.1060.30 664 777 3.2E-24 T 14-10-2018 Thimo_2687 2a92fea9f0b52c17556514738d4c5d7d 1474 Gene3D G3DSA:1.20.5.420 645 795 3.2E-24 T 14-10-2018 Thimo_2687 2a92fea9f0b52c17556514738d4c5d7d 1474 Gene3D G3DSA:3.40.1140.10 1390 1472 1.9E-27 T 14-10-2018 Thimo_3643 bd7d12a00cee97d8c693fdced82340bd 103 Gene3D G3DSA:3.30.70.20 5 51 1.8E-6 T 14-10-2018 Thimo_3643 bd7d12a00cee97d8c693fdced82340bd 103 Gene3D G3DSA:3.30.70.20 58 101 3.9E-5 T 14-10-2018 Thimo_3643 bd7d12a00cee97d8c693fdced82340bd 103 SUPERFAMILY SSF54862 8 98 1.57E-16 T 14-10-2018 Thimo_3643 bd7d12a00cee97d8c693fdced82340bd 103 Pfam PF13484 4Fe-4S double cluster binding domain 26 91 3.6E-11 T 14-10-2018 Thimo_3643 bd7d12a00cee97d8c693fdced82340bd 103 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 79 90 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3643 bd7d12a00cee97d8c693fdced82340bd 103 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 6 98 4.9E-33 T 14-10-2018 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific Thimo_1000 7878981492877e5562bf3f6735961617 419 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 44 88 9.8E-14 T 14-10-2018 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger Thimo_1000 7878981492877e5562bf3f6735961617 419 Pfam PF01610 Transposase 159 393 9.4E-72 T 14-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain Thimo_1000 7878981492877e5562bf3f6735961617 419 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 95 144 1.1E-15 T 14-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain Thimo_0420 7e57f07f6a5b39d96feb3a14cc4eebd5 399 SUPERFAMILY SSF53474 87 364 6.59E-37 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0420 7e57f07f6a5b39d96feb3a14cc4eebd5 399 Pfam PF12697 Alpha/beta hydrolase family 112 357 1.3E-14 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0420 7e57f07f6a5b39d96feb3a14cc4eebd5 399 Gene3D G3DSA:3.40.50.1820 84 369 7.5E-37 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3699 aee527c205de5a6ae87baa7a971c035c 220 Gene3D G3DSA:3.90.550.10 1 217 7.5E-61 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3699 aee527c205de5a6ae87baa7a971c035c 220 Pfam PF00483 Nucleotidyl transferase 1 117 7.1E-19 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Thimo_3699 aee527c205de5a6ae87baa7a971c035c 220 SUPERFAMILY SSF53448 1 214 3.6E-55 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_2534 0764cda8c758eff95358fdc41691303f 274 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 4 267 5.1E-102 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2534 0764cda8c758eff95358fdc41691303f 274 Gene3D G3DSA:3.40.50.720 6 266 1.4E-102 T 14-10-2018 Thimo_2534 0764cda8c758eff95358fdc41691303f 274 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 4 127 1.4E-39 T 14-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2534 0764cda8c758eff95358fdc41691303f 274 PIRSF PIRSF000161 2 270 1.0E-87 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2534 0764cda8c758eff95358fdc41691303f 274 SUPERFAMILY SSF51735 3 270 7.15E-51 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2534 0764cda8c758eff95358fdc41691303f 274 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 4.7E-43 T 14-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2534 0764cda8c758eff95358fdc41691303f 274 SUPERFAMILY SSF55347 129 238 1.33E-37 T 14-10-2018 Thimo_2534 0764cda8c758eff95358fdc41691303f 274 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 152 169 - T 14-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2534 0764cda8c758eff95358fdc41691303f 274 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 4 267 35.556 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_2534 0764cda8c758eff95358fdc41691303f 274 Gene3D G3DSA:3.30.360.10 129 236 1.4E-102 T 14-10-2018 Thimo_1199 9e231e8bbc7947ebbb40ecd978169035 687 Pfam PF03030 Inorganic H+ pyrophosphatase 15 680 1.3E-266 T 14-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Thimo_1199 9e231e8bbc7947ebbb40ecd978169035 687 PIRSF PIRSF001265 3 687 1.9E-261 T 14-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Thimo_1199 9e231e8bbc7947ebbb40ecd978169035 687 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 6 685 9.3E-265 T 14-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Thimo_1199 9e231e8bbc7947ebbb40ecd978169035 687 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 2 685 25.735 T 14-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF03705 CheR methyltransferase, all-alpha domain 265 317 2.5E-13 T 14-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF47757 264 332 1.02E-12 T 14-10-2018 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF13596 PAS domain 785 889 8.6E-21 T 14-10-2018 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:3.30.450.20 770 897 6.1E-9 T 14-10-2018 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF01339 CheB methylesterase 65 240 3.6E-56 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF53335 331 523 1.56E-46 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF57997 689 790 2.13E-5 T 14-10-2018 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:3.40.50.180 57 248 1.1E-65 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 SMART SM00091 906 972 2.2E-6 T 14-10-2018 IPR000014 PAS domain Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 SMART SM00091 783 848 59.0 T 14-10-2018 IPR000014 PAS domain Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF00989 PAS fold 907 1007 1.1E-8 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF52738 61 246 6.54E-58 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 399 415 1.4E-23 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 484 507 1.4E-23 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 323 335 1.4E-23 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 465 479 1.4E-23 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 286 299 1.4E-23 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 PRINTS PR00996 Glutamate methyltransferase family signature 363 383 1.4E-23 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 SMART SM00138 264 525 1.8E-76 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Pfam PF01739 CheR methyltransferase, SAM binding domain 331 519 4.5E-51 T 14-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 905 1012 1.4E-14 T 14-10-2018 IPR000014 PAS domain Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 SUPERFAMILY SSF55785 898 1011 7.68E-20 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:3.40.50.150 329 527 3.0E-61 T 14-10-2018 Thimo_2462 ab08e7bbd24687bc79aaff0e74366924 1020 Gene3D G3DSA:3.30.450.20 914 1016 6.8E-20 T 14-10-2018 Thimo_1799 8549d94a8bab1935c946d3fe6bd0e38c 280 SUPERFAMILY SSF53335 10 278 8.28E-58 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1799 8549d94a8bab1935c946d3fe6bd0e38c 280 Pfam PF08241 Methyltransferase domain 71 169 5.5E-22 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_1799 8549d94a8bab1935c946d3fe6bd0e38c 280 Gene3D G3DSA:3.40.50.150 19 278 6.0E-67 T 14-10-2018 Thimo_0279 672b8c231b94c9044a229be547a37f09 153 Pfam PF04347 Flagellar biosynthesis protein, FliO 68 129 2.7E-12 T 14-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 Thimo_0279 672b8c231b94c9044a229be547a37f09 153 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 56 120 2.7E-16 T 14-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 Thimo_3445 df0540ef01d28d4b42633a3fd8b48813 245 Pfam PF01048 Phosphorylase superfamily 7 181 4.4E-31 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Thimo_3445 df0540ef01d28d4b42633a3fd8b48813 245 SUPERFAMILY SSF53167 4 191 1.57E-41 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Thimo_3445 df0540ef01d28d4b42633a3fd8b48813 245 Gene3D G3DSA:3.40.50.1580 5 194 1.0E-39 T 14-10-2018 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 SUPERFAMILY SSF52283 5 468 7.37E-119 T 14-10-2018 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 Gene3D G3DSA:3.40.50.720 231 388 2.0E-241 T 14-10-2018 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 SMART SM00997 229 388 6.2E-115 T 14-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 251 267 - T 14-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 229 388 5.5E-83 T 14-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 Gene3D G3DSA:3.40.50.1480 7 468 2.0E-241 T 14-10-2018 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 78 92 - T 14-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 7 460 2.2E-192 T 14-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 PIRSF PIRSF001109 1 468 3.8E-193 T 14-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 SUPERFAMILY SSF51735 229 388 2.11E-80 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2179 2399c84c99287f4475789430bbb312f2 468 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 2 460 49.885 T 14-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 SMART SM00996 6 467 0.0 T 14-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Thimo_2179 2399c84c99287f4475789430bbb312f2 468 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 6 467 1.8E-151 T 14-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Thimo_3298 c3882a3ca7adbf383156c152aabb4a76 268 SMART SM00849 20 217 6.7E-4 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_3298 c3882a3ca7adbf383156c152aabb4a76 268 Gene3D G3DSA:3.60.15.10 2 243 7.6E-23 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3298 c3882a3ca7adbf383156c152aabb4a76 268 Pfam PF12706 Beta-lactamase superfamily domain 34 218 1.6E-10 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_3298 c3882a3ca7adbf383156c152aabb4a76 268 SUPERFAMILY SSF56281 6 242 1.44E-26 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.30.190.20 1115 1235 3.0E-22 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 1512 1818 2.55E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 ProSitePatterns PS00211 ABC transporters family signature. 1728 1742 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 626 935 1.81E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.30.190.20 134 230 1.4E-209 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 703 850 4.4E-123 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 1590 1728 3.0E-126 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 10 605 1.4E-209 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.10.8.280 280 382 1.4E-209 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 ProSitePatterns PS00211 ABC transporters family signature. 1379 1393 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 8 949 6.1E-267 T 14-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 SMART SM00382 1008 1456 1.8 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 SMART SM00382 643 930 0.1 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 SMART SM00382 1523 1811 0.0032 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 994 1461 4.44E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 1507 1840 3.0E-126 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 SUPERFAMILY SSF52540 9 579 2.99E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:1.20.1580.10 94 502 1.4E-209 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 624 960 4.4E-123 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 985 1114 3.1E-31 T 14-10-2018 Thimo_2142 d06e5dce39de077df2b9c62be06c65ad 1855 Gene3D G3DSA:3.40.50.300 1247 1492 2.7E-62 T 14-10-2018 Thimo_2372 78edbb3d1b71f7377c58cb34eaa7855a 269 SUPERFAMILY SSF51556 2 256 6.62E-81 T 14-10-2018 IPR032466 Metal-dependent hydrolase Thimo_2372 78edbb3d1b71f7377c58cb34eaa7855a 269 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Thimo_2372 78edbb3d1b71f7377c58cb34eaa7855a 269 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 256 1.2E-77 T 14-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 Thimo_2372 78edbb3d1b71f7377c58cb34eaa7855a 269 Gene3D G3DSA:3.20.20.140 1 261 6.0E-86 T 14-10-2018 Thimo_2372 78edbb3d1b71f7377c58cb34eaa7855a 269 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 192 208 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Thimo_2372 78edbb3d1b71f7377c58cb34eaa7855a 269 Pfam PF01026 TatD related DNase 3 255 6.2E-73 T 14-10-2018 IPR001130 TatD family GO:0016788 Thimo_2372 78edbb3d1b71f7377c58cb34eaa7855a 269 PIRSF PIRSF005902 1 259 1.6E-71 T 14-10-2018 IPR001130 TatD family GO:0016788 Thimo_0535 4d993b86b423fb0c2fe71510157bac7d 474 SUPERFAMILY SSF53955 161 274 3.83E-28 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_0535 4d993b86b423fb0c2fe71510157bac7d 474 SMART SM00257 428 473 2.9E-9 T 14-10-2018 IPR018392 LysM domain Thimo_0535 4d993b86b423fb0c2fe71510157bac7d 474 Gene3D G3DSA:1.10.530.10 157 316 1.2E-24 T 14-10-2018 Thimo_0535 4d993b86b423fb0c2fe71510157bac7d 474 SUPERFAMILY SSF54106 427 472 1.83E-9 T 14-10-2018 Thimo_0535 4d993b86b423fb0c2fe71510157bac7d 474 Gene3D G3DSA:3.10.350.10 416 474 4.0E-13 T 14-10-2018 IPR036779 LysM domain superfamily Thimo_0535 4d993b86b423fb0c2fe71510157bac7d 474 Pfam PF01476 LysM domain 429 472 2.7E-10 T 14-10-2018 IPR018392 LysM domain Thimo_0535 4d993b86b423fb0c2fe71510157bac7d 474 Pfam PF01464 Transglycosylase SLT domain 175 268 2.2E-18 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Thimo_1893 8f8840658bca4bb0b0c81d2a2dfa02c0 374 Pfam PF04055 Radical SAM superfamily 119 281 8.4E-18 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_1893 8f8840658bca4bb0b0c81d2a2dfa02c0 374 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 16 352 8.7E-124 T 14-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Thimo_1893 8f8840658bca4bb0b0c81d2a2dfa02c0 374 SUPERFAMILY SSF102114 112 332 4.45E-14 T 14-10-2018 Thimo_1893 8f8840658bca4bb0b0c81d2a2dfa02c0 374 Gene3D G3DSA:1.10.150.530 16 75 2.9E-17 T 14-10-2018 Thimo_1893 8f8840658bca4bb0b0c81d2a2dfa02c0 374 Gene3D G3DSA:3.20.20.70 77 339 6.4E-102 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1893 8f8840658bca4bb0b0c81d2a2dfa02c0 374 PIRSF PIRSF006004 11 366 4.1E-131 T 14-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 Thimo_1893 8f8840658bca4bb0b0c81d2a2dfa02c0 374 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 15 354 70.439 T 14-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 Gene3D G3DSA:3.30.390.60 176 278 1.8E-44 T 14-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 Gene3D G3DSA:1.10.10.10 38 132 8.8E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 52 386 1.6E-99 T 14-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 50 380 28.821 T 14-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 SUPERFAMILY SSF55781 120 389 8.44E-64 T 14-10-2018 Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 Pfam PF01628 HrcA protein C terminal domain 154 373 5.4E-60 T 14-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 PIRSF PIRSF005485 49 390 2.4E-106 T 14-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 SUPERFAMILY SSF46785 51 131 1.82E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 54 121 1.9E-6 T 14-10-2018 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 Thimo_2538 b2b6e3d9c7314229c96b43b64fdddbb6 390 Gene3D G3DSA:3.30.450.40 154 386 1.8E-44 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_2849 d8f02041755b9688319d2bcfd4886eb3 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 103 1.2E-33 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2849 d8f02041755b9688319d2bcfd4886eb3 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 14-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2849 d8f02041755b9688319d2bcfd4886eb3 105 Pfam PF00467 KOW motif 7 35 3.7E-5 T 14-10-2018 IPR005824 KOW Thimo_2849 d8f02041755b9688319d2bcfd4886eb3 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 102 1.5E-22 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2849 d8f02041755b9688319d2bcfd4886eb3 105 Gene3D G3DSA:2.30.30.30 1 104 1.5E-34 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 Thimo_2849 d8f02041755b9688319d2bcfd4886eb3 105 SUPERFAMILY SSF50104 3 102 5.01E-29 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Thimo_2849 d8f02041755b9688319d2bcfd4886eb3 105 SMART SM00739 3 30 6.6E-4 T 14-10-2018 IPR005824 KOW Thimo_2849 d8f02041755b9688319d2bcfd4886eb3 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 97 19.367 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.2090.10 178 268 4.7E-285 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82866 785 1009 4.84E-44 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82693 137 323 3.14E-24 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.70.1440 649 844 4.7E-285 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Pfam PF00873 AcrB/AcrD/AcrF family 4 1005 2.7E-256 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82693 43 130 3.14E-20 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:1.20.1640.10 10 500 4.7E-285 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82693 553 650 2.3E-15 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.2090.10 699 787 4.7E-285 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.70.1320 134 325 4.7E-285 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82714 183 264 2.09E-18 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82714 701 786 1.44E-11 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 SUPERFAMILY SSF82866 289 488 4.45E-47 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.70.1430 555 648 4.7E-285 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:1.20.1640.10 501 1002 4.7E-285 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 Gene3D G3DSA:3.30.70.1430 40 795 4.7E-285 T 14-10-2018 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.3E-66 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 3.3E-66 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 3.3E-66 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 3.3E-66 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.3E-66 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 3.3E-66 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 3.3E-66 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1868 2c0a79509c0ca9a6429ecc40d1739f90 1038 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 3.3E-66 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1096 069bb1f69945b7a3f532f2050ec17315 400 Pfam PF00155 Aminotransferase class I and II 35 374 8.3E-55 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Thimo_1096 069bb1f69945b7a3f532f2050ec17315 400 Gene3D G3DSA:3.40.640.10 67 291 8.4E-129 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_1096 069bb1f69945b7a3f532f2050ec17315 400 Gene3D G3DSA:3.90.1150.10 292 389 8.4E-129 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_1096 069bb1f69945b7a3f532f2050ec17315 400 SUPERFAMILY SSF53383 8 393 7.43E-106 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1096 069bb1f69945b7a3f532f2050ec17315 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 239 252 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Thimo_2793 9e87d7e2595a2c7c33a22052af413c4d 496 Gene3D G3DSA:3.30.1490.20 302 365 6.7E-8 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_2793 9e87d7e2595a2c7c33a22052af413c4d 496 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 26 176 2.9E-49 T 14-10-2018 IPR025839 RimK-like ATPgrasp N-terminal domain Thimo_2793 9e87d7e2595a2c7c33a22052af413c4d 496 SUPERFAMILY SSF56059 277 479 4.77E-39 T 14-10-2018 Thimo_2793 9e87d7e2595a2c7c33a22052af413c4d 496 Gene3D G3DSA:3.40.50.20 215 301 3.7E-5 T 14-10-2018 Thimo_2793 9e87d7e2595a2c7c33a22052af413c4d 496 Pfam PF02655 ATP-grasp domain 284 454 2.4E-5 T 14-10-2018 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 Thimo_2793 9e87d7e2595a2c7c33a22052af413c4d 496 Gene3D G3DSA:3.30.470.20 366 483 2.2E-18 T 14-10-2018 Thimo_2013 b76628f1e81d46316d0dc515dc4c7331 427 SUPERFAMILY SSF48208 27 420 7.29E-41 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Thimo_2013 b76628f1e81d46316d0dc515dc4c7331 427 Pfam PF06202 Amylo-alpha-1,6-glucosidase 46 143 7.8E-5 T 14-10-2018 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 Thimo_2013 b76628f1e81d46316d0dc515dc4c7331 427 Pfam PF12899 Alkaline and neutral invertase 255 411 1.3E-8 T 14-10-2018 IPR024746 Glycosyl hydrolase family 100 GO:0033926 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 242 251 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 SUPERFAMILY SSF52540 30 268 7.94E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 SUPERFAMILY SSF46689 242 344 8.6E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 116 131 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 Pfam PF00158 Sigma-54 interaction domain 32 196 2.4E-66 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 SMART SM00382 50 194 5.6E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 Pfam PF02954 Bacterial regulatory protein, Fis family 304 343 3.3E-14 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 Gene3D G3DSA:1.10.8.60 203 276 3.7E-16 T 14-10-2018 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 Gene3D G3DSA:1.10.10.60 284 348 1.4E-12 T 14-10-2018 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 310 327 7.1E-9 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 327 347 7.1E-9 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 Gene3D G3DSA:3.40.50.300 18 201 6.5E-61 T 14-10-2018 Thimo_0268 1cdb05ae426600b83b0fd082bd5e9feb 365 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 54 67 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 ProSitePatterns PS00129 Glycosyl hydrolases family 31 active site. 411 418 - T 14-10-2018 IPR030458 Glycosyl hydrolases family 31, active site Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 SUPERFAMILY SSF74650 12 246 2.89E-41 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 SUPERFAMILY SSF51011 605 685 1.15E-17 T 14-10-2018 Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 Pfam PF01055 Glycosyl hydrolases family 31 239 689 1.5E-147 T 14-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 Pfam PF13802 Galactose mutarotase-like 150 218 6.9E-16 T 14-10-2018 IPR025887 Glycoside hydrolase family 31, N-terminal domain Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 Gene3D G3DSA:3.20.20.80 247 606 5.3E-135 T 14-10-2018 Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 SUPERFAMILY SSF51445 249 603 2.92E-89 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 Gene3D G3DSA:2.60.40.1180 607 684 8.1E-20 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 Pfam PF17137 Domain of unknown function (DUF5110) 704 774 1.2E-14 T 14-10-2018 IPR033403 Domain of unknown function DUF5110 Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 Gene3D G3DSA:2.60.40.1180 685 803 1.9E-14 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta Thimo_1811 4e88be8cd2521bcde3e46afbb643ecf1 817 Gene3D G3DSA:2.60.40.1760 10 243 1.4E-32 T 14-10-2018 Thimo_2166 b362f87cfcf3ebf3830efac7638fbac4 603 SUPERFAMILY SSF52540 360 601 3.03E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2166 b362f87cfcf3ebf3830efac7638fbac4 603 Gene3D G3DSA:1.20.1560.10 5 350 8.5E-47 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_2166 b362f87cfcf3ebf3830efac7638fbac4 603 Pfam PF00664 ABC transporter transmembrane region 66 319 9.6E-23 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Thimo_2166 b362f87cfcf3ebf3830efac7638fbac4 603 SMART SM00382 392 577 1.8E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2166 b362f87cfcf3ebf3830efac7638fbac4 603 SUPERFAMILY SSF90123 18 344 7.85E-49 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_2166 b362f87cfcf3ebf3830efac7638fbac4 603 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2166 b362f87cfcf3ebf3830efac7638fbac4 603 Gene3D G3DSA:3.40.50.300 362 603 1.3E-83 T 14-10-2018 Thimo_2166 b362f87cfcf3ebf3830efac7638fbac4 603 Pfam PF00005 ABC transporter 383 531 1.6E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 Pfam PF00990 Diguanylate cyclase, GGDEF domain 360 486 3.1E-33 T 14-10-2018 IPR000160 GGDEF domain Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 Gene3D G3DSA:3.30.450.20 67 200 3.7E-42 T 14-10-2018 Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 Gene3D G3DSA:3.30.450.20 207 281 1.9E-13 T 14-10-2018 Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 SUPERFAMILY SSF55073 365 486 1.37E-34 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 SMART SM00267 349 487 1.4E-31 T 14-10-2018 IPR000160 GGDEF domain Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 SUPERFAMILY SSF103190 33 199 3.14E-46 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 SUPERFAMILY SSF103190 209 314 1.26E-20 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 Gene3D G3DSA:3.30.70.270 346 487 5.5E-43 T 14-10-2018 Thimo_1231 8d64848bd8667a84574cd1a4316c1eab 487 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 356 486 2.6E-34 T 14-10-2018 IPR000160 GGDEF domain Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 ProSitePatterns PS00056 Ribosomal protein S17 signature. 59 71 - T 14-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 PRINTS PR00973 Ribosomal protein S17 family signature 69 76 5.2E-13 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 PRINTS PR00973 Ribosomal protein S17 family signature 27 50 5.2E-13 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 PRINTS PR00973 Ribosomal protein S17 family signature 59 69 5.2E-13 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 Pfam PF00366 Ribosomal protein S17 13 80 1.1E-33 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 8 83 24.444 T 14-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 9 79 6.0E-26 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 Gene3D G3DSA:2.40.50.140 4 85 1.4E-36 T 14-10-2018 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 9 78 2.5E-36 T 14-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2851 78a9b03e1220d454d4daefcccc071425 86 SUPERFAMILY SSF50249 8 85 1.63E-32 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2766 8573c41d713a2c5405d0628c41b5e60a 138 SUPERFAMILY SSF53062 3 129 1.22E-25 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 Thimo_2766 8573c41d713a2c5405d0628c41b5e60a 138 Gene3D G3DSA:3.40.50.510 3 138 2.1E-28 T 14-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 Thimo_2766 8573c41d713a2c5405d0628c41b5e60a 138 Pfam PF03610 PTS system fructose IIA component 6 116 1.7E-13 T 14-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Thimo_0490 a4a35003f92c59fe43a72dda5292384c 128 Gene3D G3DSA:3.10.180.10 1 128 4.9E-47 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Thimo_0490 a4a35003f92c59fe43a72dda5292384c 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 7.3E-24 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Thimo_0490 a4a35003f92c59fe43a72dda5292384c 128 SUPERFAMILY SSF54593 1 125 8.19E-36 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Thimo_0490 a4a35003f92c59fe43a72dda5292384c 128 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 125 2.3E-61 T 14-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 SUPERFAMILY SSF51161 304 417 1.06E-18 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 SUPERFAMILY SSF53448 13 372 6.34E-75 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 Gene3D G3DSA:3.90.550.10 5 300 5.8E-86 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 22 41 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 16 392 3.1E-152 T 14-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 210 220 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 112 120 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 Gene3D G3DSA:2.160.10.10 301 423 4.4E-35 T 14-10-2018 Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 13 419 51.033 T 14-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Thimo_3318 340a46e9c884a6750eab65a38d96483c 426 Pfam PF00483 Nucleotidyl transferase 18 285 9.4E-63 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Thimo_0308 e3ba8d95b6dbe83f18fdd20f4189079c 134 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 1 124 9.832 T 14-10-2018 IPR022907 VapC family GO:0004540 Thimo_0308 e3ba8d95b6dbe83f18fdd20f4189079c 134 Pfam PF01850 PIN domain 1 116 4.1E-10 T 14-10-2018 IPR002716 PIN domain Thimo_0308 e3ba8d95b6dbe83f18fdd20f4189079c 134 SUPERFAMILY SSF88723 2 124 3.08E-14 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_0308 e3ba8d95b6dbe83f18fdd20f4189079c 134 Gene3D G3DSA:3.40.50.1010 1 118 1.5E-20 T 14-10-2018 Thimo_1338 e9e66e2cbf19d86e92295863a225f3f2 477 Gene3D G3DSA:1.20.210.10 1 470 1.3E-193 T 14-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_1338 e9e66e2cbf19d86e92295863a225f3f2 477 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 8 461 1.4E-202 T 14-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Thimo_1338 e9e66e2cbf19d86e92295863a225f3f2 477 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 440 4.1E-111 T 14-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_1338 e9e66e2cbf19d86e92295863a225f3f2 477 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 203 258 - T 14-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_1338 e9e66e2cbf19d86e92295863a225f3f2 477 SUPERFAMILY SSF81442 9 461 2.09E-117 T 14-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_1352 4e47bdf88d05384b0575f3d69030b4c4 186 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Thimo_1352 4e47bdf88d05384b0575f3d69030b4c4 186 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 13 179 5.8E-50 T 14-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 Thimo_1352 4e47bdf88d05384b0575f3d69030b4c4 186 SUPERFAMILY SSF52833 47 182 3.28E-35 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_1352 4e47bdf88d05384b0575f3d69030b4c4 186 Pfam PF08534 Redoxin 43 169 4.8E-22 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Thimo_1352 4e47bdf88d05384b0575f3d69030b4c4 186 Gene3D G3DSA:3.40.30.10 29 186 6.4E-44 T 14-10-2018 Thimo_3506 803eb3ab479c014a0514fbb8aa6a5c77 335 Pfam PF12224 Putative amidoligase enzyme 21 287 2.4E-65 T 14-10-2018 IPR022025 Putative amidoligase enzyme Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 Gene3D G3DSA:1.10.287.130 312 391 1.4E-18 T 14-10-2018 Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 SUPERFAMILY SSF47384 316 390 9.61E-13 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 SUPERFAMILY SSF55874 382 540 3.8E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 489 5.7E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 522 5.7E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 503 5.7E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 SMART SM00387 435 542 3.5E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 Gene3D G3DSA:3.30.565.10 393 542 2.3E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 436 541 2.5E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 SMART SM00388 326 392 2.8E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 Gene3D G3DSA:3.30.450.20 201 311 1.6E-5 T 14-10-2018 Thimo_2190 f98d1817462dd7d56a15731bfd9ddb92 542 Pfam PF00512 His Kinase A (phospho-acceptor) domain 326 391 7.7E-14 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0699 e30e18e5d1f3d3d1a2c0461a6e87aded 249 Gene3D G3DSA:3.60.20.10 2 234 1.5E-22 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_0699 e30e18e5d1f3d3d1a2c0461a6e87aded 249 SUPERFAMILY SSF56235 2 243 7.53E-29 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_0699 e30e18e5d1f3d3d1a2c0461a6e87aded 249 PIRSF PIRSF009120 1 248 4.4E-86 T 14-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 SUPERFAMILY SSF54534 82 157 1.44E-22 T 14-10-2018 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Gene3D G3DSA:3.10.50.30 76 158 3.4E-28 T 14-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 SUPERFAMILY SSF46557 3 78 1.57E-27 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 32.572 T 14-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 2.8E-55 T 14-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 PIRSF PIRSF006092 1 158 2.5E-49 T 14-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 1.3E-26 T 14-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 7.2E-30 T 14-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Thimo_0296 626dc07f3d89d1b4bc3a5bd0eab4e40e 158 Gene3D G3DSA:1.10.287.180 1 75 3.6E-30 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Pfam PF00009 Elongation factor Tu GTP binding domain 429 585 7.4E-35 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 ProSitePatterns PS01176 Initiation factor 2 signature. 875 897 - T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF50447 826 921 4.52E-32 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF52540 416 592 2.09E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 4 922 17.598 T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 346 396 4.1E-15 T 14-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF46955 4 52 3.48E-10 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:2.40.30.10 826 923 5.6E-32 T 14-10-2018 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:3.40.50.300 421 595 8.0E-73 T 14-10-2018 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 427 583 1.8E-32 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF52156 701 831 1.57E-35 T 14-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 66 118 2.2E-18 T 14-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 SUPERFAMILY SSF50447 597 679 7.78E-25 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 340 922 5.6E-262 T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Pfam PF11987 Translation-initiation factor 2 710 814 2.9E-35 T 14-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:2.40.30.10 596 713 1.3E-40 T 14-10-2018 Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:3.40.50.10050 718 825 1.7E-35 T 14-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Thimo_0703 be52c767afc951e579a2ec841cd033b8 924 Gene3D G3DSA:3.30.56.50 3 52 1.8E-12 T 14-10-2018 Thimo_2734 89d9ad1dccf0c72031de7ac133376e5a 320 Gene3D G3DSA:1.20.1440.20 112 319 4.3E-50 T 14-10-2018 IPR023353 LemA-like domain superfamily Thimo_2734 89d9ad1dccf0c72031de7ac133376e5a 320 Pfam PF04011 LemA family 108 319 5.0E-60 T 14-10-2018 IPR007156 LemA Thimo_2734 89d9ad1dccf0c72031de7ac133376e5a 320 SUPERFAMILY SSF140478 121 308 2.22E-40 T 14-10-2018 IPR023353 LemA-like domain superfamily Thimo_2130 cbc241c065bdc52a53bf4b581c4ccf8e 253 PIRSF PIRSF000386 1 250 2.7E-91 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Thimo_2130 cbc241c065bdc52a53bf4b581c4ccf8e 253 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 220 1.5E-59 T 14-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Thimo_2130 cbc241c065bdc52a53bf4b581c4ccf8e 253 Gene3D G3DSA:3.40.1280.10 1 164 2.0E-62 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_2130 cbc241c065bdc52a53bf4b581c4ccf8e 253 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 253 109.388 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Thimo_2130 cbc241c065bdc52a53bf4b581c4ccf8e 253 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 225 9.9E-92 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Thimo_2130 cbc241c065bdc52a53bf4b581c4ccf8e 253 SUPERFAMILY SSF75217 1 242 6.54E-96 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Thimo_2130 cbc241c065bdc52a53bf4b581c4ccf8e 253 Gene3D G3DSA:1.10.1270.20 165 252 6.9E-31 T 14-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 PRINTS PR00344 Bacterial sensor protein C-terminal signature 634 652 2.5E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 PRINTS PR00344 Bacterial sensor protein C-terminal signature 617 627 2.5E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 PRINTS PR00344 Bacterial sensor protein C-terminal signature 658 671 2.5E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 PRINTS PR00344 Bacterial sensor protein C-terminal signature 599 613 2.5E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Pfam PF00072 Response regulator receiver domain 703 812 5.4E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SMART SM00091 281 348 4.1E-8 T 14-10-2018 IPR000014 PAS domain Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SMART SM00387 560 674 1.4E-37 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Pfam PF00512 His Kinase A (phospho-acceptor) domain 446 513 1.0E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Gene3D G3DSA:3.40.50.12740 700 820 1.7E-47 T 14-10-2018 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SUPERFAMILY SSF47384 431 515 8.83E-22 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Gene3D G3DSA:3.30.450.20 280 411 1.0E-26 T 14-10-2018 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SUPERFAMILY SSF55785 270 399 1.34E-24 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SUPERFAMILY SSF55874 503 672 9.82E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Gene3D G3DSA:1.10.287.130 412 512 3.4E-27 T 14-10-2018 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SMART SM00388 446 514 8.6E-22 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SUPERFAMILY SSF52172 699 819 4.27E-41 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Pfam PF13426 PAS domain 292 399 5.6E-13 T 14-10-2018 IPR000014 PAS domain Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 560 671 7.6E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Gene3D G3DSA:1.20.1480.50 183 279 3.4E-10 T 14-10-2018 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 Gene3D G3DSA:3.30.565.10 513 677 6.8E-47 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SMART SM00304 222 274 2.0E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 277 408 5.9E-18 T 14-10-2018 IPR000014 PAS domain Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SUPERFAMILY SSF158472 222 271 9.42E-6 T 14-10-2018 Thimo_0834 bc94358e55fac87f01f9201907e23517 821 SMART SM00448 701 814 1.0E-43 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2813 582aa60fb5e11a0c9193031827ee8317 332 SUPERFAMILY SSF46689 264 316 2.57E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2813 582aa60fb5e11a0c9193031827ee8317 332 Gene3D G3DSA:1.10.10.60 208 320 5.7E-30 T 14-10-2018 Thimo_2813 582aa60fb5e11a0c9193031827ee8317 332 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 296 2.1E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Thimo_2813 582aa60fb5e11a0c9193031827ee8317 332 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 296 312 2.1E-7 T 14-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Thimo_2813 582aa60fb5e11a0c9193031827ee8317 332 Pfam PF12833 Helix-turn-helix domain 233 314 2.5E-21 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_2813 582aa60fb5e11a0c9193031827ee8317 332 SMART SM00342 227 312 5.1E-26 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_2813 582aa60fb5e11a0c9193031827ee8317 332 Pfam PF14525 AraC-binding-like domain 67 191 3.3E-11 T 14-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like Thimo_0976 bd4066512ff5421202a5f601b145d5b3 482 Pfam PF01050 Mannose-6-phosphate isomerase 322 472 4.9E-62 T 14-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Thimo_0976 bd4066512ff5421202a5f601b145d5b3 482 SUPERFAMILY SSF53448 5 285 1.38E-61 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0976 bd4066512ff5421202a5f601b145d5b3 482 Gene3D G3DSA:2.60.120.10 367 469 9.4E-18 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_0976 bd4066512ff5421202a5f601b145d5b3 482 SUPERFAMILY SSF51182 191 476 3.56E-71 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Thimo_0976 bd4066512ff5421202a5f601b145d5b3 482 Pfam PF00483 Nucleotidyl transferase 7 290 6.4E-54 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Thimo_0976 bd4066512ff5421202a5f601b145d5b3 482 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 5 475 2.3E-171 T 14-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Thimo_0976 bd4066512ff5421202a5f601b145d5b3 482 Gene3D G3DSA:3.90.550.10 4 357 5.2E-100 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 Gene3D G3DSA:2.10.109.10 93 211 8.0E-35 T 14-10-2018 Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 136 147 1.2E-8 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 164 176 1.2E-8 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 125 135 1.2E-8 T 14-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 SUPERFAMILY SSF51306 88 207 7.67E-31 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 Pfam PF00717 Peptidase S24-like 128 194 1.3E-14 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 TIGRFAM TIGR00498 lexA: repressor LexA 10 210 5.1E-47 T 14-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 Pfam PF01726 LexA DNA binding domain 11 66 6.7E-11 T 14-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 SUPERFAMILY SSF46785 10 71 3.71E-10 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1622 5043b1d82cd7c670f4e6ba7d43ec628c 212 Gene3D G3DSA:1.10.10.10 7 70 6.6E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3642 617f101561d0a59227425ba0189ef293 468 SUPERFAMILY SSF52540 9 168 1.13E-16 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3642 617f101561d0a59227425ba0189ef293 468 Gene3D G3DSA:2.120.10.30 194 465 2.2E-44 T 14-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Thimo_3642 617f101561d0a59227425ba0189ef293 468 SUPERFAMILY SSF63829 194 464 3.43E-46 T 14-10-2018 Thimo_3642 617f101561d0a59227425ba0189ef293 468 Pfam PF01202 Shikimate kinase 16 131 3.4E-10 T 14-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Thimo_3642 617f101561d0a59227425ba0189ef293 468 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 380 397 3.7E-5 T 14-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) Thimo_3642 617f101561d0a59227425ba0189ef293 468 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 421 439 3.7E-5 T 14-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) Thimo_3642 617f101561d0a59227425ba0189ef293 468 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 201 439 4.3E-48 T 14-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region Thimo_3642 617f101561d0a59227425ba0189ef293 468 Gene3D G3DSA:3.40.50.300 8 172 1.1E-36 T 14-10-2018 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 Pfam PF05524 PEP-utilising enzyme, N-terminal 8 131 1.3E-25 T 14-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 SUPERFAMILY SSF47831 30 148 9.81E-28 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 Gene3D G3DSA:3.50.30.10 9 241 4.4E-63 T 14-10-2018 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 Gene3D G3DSA:1.10.274.10 26 151 4.4E-63 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 261 551 2.1E-100 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 510 522 1.8E-27 T 14-10-2018 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 474 489 1.8E-27 T 14-10-2018 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 301 320 1.8E-27 T 14-10-2018 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 457 472 1.8E-27 T 14-10-2018 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 Gene3D G3DSA:3.20.20.60 242 577 3.4E-108 T 14-10-2018 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 457 475 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 Pfam PF00391 PEP-utilising enzyme, mobile domain 162 233 1.9E-20 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 SUPERFAMILY SSF51621 257 551 9.42E-96 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 PIRSF PIRSF000732 3 578 1.0E-190 T 14-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 SUPERFAMILY SSF52009 117 240 8.24E-26 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Thimo_2768 ab113e95e8e1254463147495cd670f1a 580 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 9 554 2.5E-150 T 14-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Thimo_2873 76997edb3a5f3ccf269a5155a8c2af65 125 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 68 122 9.2E-18 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Thimo_2873 76997edb3a5f3ccf269a5155a8c2af65 125 Hamap MF_00422 Protein translocase subunit SecE [secE]. 61 119 12.419 T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2873 76997edb3a5f3ccf269a5155a8c2af65 125 Gene3D G3DSA:1.20.5.1030 64 120 7.5E-19 T 14-10-2018 IPR038379 SecE superfamily Thimo_2873 76997edb3a5f3ccf269a5155a8c2af65 125 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 67 120 5.2E-21 T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Thimo_2873 76997edb3a5f3ccf269a5155a8c2af65 125 PRINTS PR01650 Bacterial translocase SecE signature 87 107 4.5E-24 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Thimo_2873 76997edb3a5f3ccf269a5155a8c2af65 125 PRINTS PR01650 Bacterial translocase SecE signature 63 83 4.5E-24 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Thimo_2873 76997edb3a5f3ccf269a5155a8c2af65 125 PRINTS PR01650 Bacterial translocase SecE signature 107 123 4.5E-24 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Thimo_2873 76997edb3a5f3ccf269a5155a8c2af65 125 PRINTS PR01650 Bacterial translocase SecE signature 42 63 4.5E-24 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Thimo_1718 41de6a2f63293d715bf62e580a0c3da0 100 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 7 85 1.5E-34 T 14-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 Thimo_1718 41de6a2f63293d715bf62e580a0c3da0 100 SUPERFAMILY SSF47413 11 93 1.31E-25 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_1718 41de6a2f63293d715bf62e580a0c3da0 100 SMART SM00530 15 71 0.0035 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_1718 41de6a2f63293d715bf62e580a0c3da0 100 Gene3D G3DSA:1.10.260.40 3 100 7.2E-34 T 14-10-2018 Thimo_1718 41de6a2f63293d715bf62e580a0c3da0 100 Pfam PF01381 Helix-turn-helix 23 67 1.6E-6 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3514 024844d52c395b6ca2fca3ab6ff67c78 126 Pfam PF02261 Aspartate decarboxylase 1 114 5.7E-49 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Thimo_3514 024844d52c395b6ca2fca3ab6ff67c78 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 70.538 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Thimo_3514 024844d52c395b6ca2fca3ab6ff67c78 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 122 2.0E-43 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Thimo_3514 024844d52c395b6ca2fca3ab6ff67c78 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 125 3.2E-50 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Thimo_3514 024844d52c395b6ca2fca3ab6ff67c78 126 SUPERFAMILY SSF50692 1 121 2.24E-47 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Thimo_3514 024844d52c395b6ca2fca3ab6ff67c78 126 Gene3D G3DSA:2.40.40.20 1 126 2.0E-53 T 14-10-2018 Thimo_3514 024844d52c395b6ca2fca3ab6ff67c78 126 PIRSF PIRSF006246 1 125 3.3E-50 T 14-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 SUPERFAMILY SSF53756 28 448 1.57E-68 T 14-10-2018 Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 470 707 5.3E-78 T 14-10-2018 IPR006380 Sucrose-phosphatase-like, N-terminal Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 Gene3D G3DSA:3.40.50.1000 472 704 3.9E-63 T 14-10-2018 IPR023214 HAD superfamily Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 SUPERFAMILY SSF56784 470 682 3.3E-23 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 Gene3D G3DSA:3.40.50.2000 225 433 1.2E-140 T 14-10-2018 Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 Pfam PF00534 Glycosyl transferases group 1 250 411 2.4E-22 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 Gene3D G3DSA:3.40.50.2000 30 439 1.2E-140 T 14-10-2018 Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 TIGRFAM TIGR02472 sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain 8 445 8.0E-208 T 14-10-2018 IPR012822 Sucrose-phosphate synthase, glycosyltransferase domain Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 Gene3D G3DSA:3.90.1070.10 557 626 3.9E-63 T 14-10-2018 Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 Pfam PF13439 Glycosyltransferase Family 4 33 229 5.2E-18 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1348 7f5b9e8af5c35a111256e7f7434db774 729 TIGRFAM TIGR02471 sucr_syn_bact_C: sucrose-phosphate synthase, sucrose phosphatase-like domain 472 707 6.8E-96 T 14-10-2018 IPR012821 Sucrose phosphate synthase, sucrose phosphatase-like domain Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 SMART SM00363 22 82 1.6E-7 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 Pfam PF00849 RNA pseudouridylate synthase 102 250 1.8E-30 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 Pfam PF01479 S4 domain 22 68 2.0E-9 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 139 153 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 Gene3D G3DSA:3.10.290.10 11 74 1.8E-16 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 313 2.7E-80 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 SUPERFAMILY SSF55120 90 313 2.56E-61 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 SUPERFAMILY SSF55174 21 73 1.43E-9 T 14-10-2018 Thimo_0532 e794bcab80eeaf8842f500a3e7cd0845 317 Gene3D G3DSA:3.30.2350.10 93 316 1.6E-71 T 14-10-2018 Thimo_2129 687321957a6456ce918bec5468888ae0 114 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 14-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2129 687321957a6456ce918bec5468888ae0 114 PRINTS PR00061 Ribosomal protein L19 signature 34 63 5.3E-40 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2129 687321957a6456ce918bec5468888ae0 114 PRINTS PR00061 Ribosomal protein L19 signature 88 113 5.3E-40 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2129 687321957a6456ce918bec5468888ae0 114 PRINTS PR00061 Ribosomal protein L19 signature 4 33 5.3E-40 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2129 687321957a6456ce918bec5468888ae0 114 Pfam PF01245 Ribosomal protein L19 3 113 2.6E-49 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2129 687321957a6456ce918bec5468888ae0 114 PIRSF PIRSF002191 1 114 1.0E-49 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2129 687321957a6456ce918bec5468888ae0 114 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.041 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2129 687321957a6456ce918bec5468888ae0 114 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 5.1E-49 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2129 687321957a6456ce918bec5468888ae0 114 SUPERFAMILY SSF50104 2 113 1.1E-46 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Thimo_2129 687321957a6456ce918bec5468888ae0 114 Gene3D G3DSA:2.30.30.790 7 114 1.1E-14 T 14-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0076 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 272 4.7E-75 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Thimo_0076 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:3.40.50.300 282 638 2.5E-122 T 14-10-2018 Thimo_0076 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:1.10.486.10 384 540 2.5E-122 T 14-10-2018 Thimo_0076 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Pfam PF13361 UvrD-like helicase C-terminal domain 278 618 4.1E-70 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Thimo_0076 8bfb6162d1f51dac1ecf4b08274a4b4a 721 SUPERFAMILY SSF52540 4 644 1.27E-180 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0076 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:1.10.10.160 115 188 5.1E-100 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily Thimo_0076 8bfb6162d1f51dac1ecf4b08274a4b4a 721 Gene3D G3DSA:3.40.50.300 11 274 5.1E-100 T 14-10-2018 Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 SUPERFAMILY SSF53850 103 306 2.44E-39 T 14-10-2018 Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 Pfam PF03466 LysR substrate binding domain 102 300 2.1E-37 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 Gene3D G3DSA:3.40.190.10 103 297 6.4E-51 T 14-10-2018 Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 SUPERFAMILY SSF46785 14 121 4.54E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 7.8E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 Gene3D G3DSA:3.40.190.10 177 275 6.4E-51 T 14-10-2018 Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 4.8E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 4.8E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 4.8E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1853 815db0db62c6c075a60520b9d29d9383 326 Gene3D G3DSA:1.10.10.10 11 94 3.3E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2144 1f71c765614b6942035312e9ed23a547 139 SUPERFAMILY SSF52833 21 85 5.06E-5 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2144 1f71c765614b6942035312e9ed23a547 139 Pfam PF04134 Protein of unknown function, DUF393 23 128 7.7E-24 T 14-10-2018 IPR007263 Protein of unknown function DUF393 Thimo_0072 fe0b9e4d643bca1d9040c2886f8bd3ca 54 PIRSF PIRSF000071 1 54 2.3E-25 T 14-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 Thimo_0072 fe0b9e4d643bca1d9040c2886f8bd3ca 54 SUPERFAMILY SSF57802 1 53 2.36E-22 T 14-10-2018 Thimo_0072 fe0b9e4d643bca1d9040c2886f8bd3ca 54 PRINTS PR00163 Rubredoxin signature 33 49 2.2E-8 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 Thimo_0072 fe0b9e4d643bca1d9040c2886f8bd3ca 54 PRINTS PR00163 Rubredoxin signature 3 19 2.2E-8 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 Thimo_0072 fe0b9e4d643bca1d9040c2886f8bd3ca 54 Pfam PF00301 Rubredoxin 3 49 3.2E-22 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 Thimo_0072 fe0b9e4d643bca1d9040c2886f8bd3ca 54 Gene3D G3DSA:2.20.28.10 1 54 1.7E-26 T 14-10-2018 Thimo_0072 fe0b9e4d643bca1d9040c2886f8bd3ca 54 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 14-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 Thimo_3164 bb69e111b1cc14e1c924bbeda85292f6 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3164 bb69e111b1cc14e1c924bbeda85292f6 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 2.1E-10 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3164 bb69e111b1cc14e1c924bbeda85292f6 141 SUPERFAMILY SSF54523 11 129 4.24E-24 T 14-10-2018 Thimo_3164 bb69e111b1cc14e1c924bbeda85292f6 141 Gene3D G3DSA:3.30.700.10 11 139 8.4E-24 T 14-10-2018 Thimo_3164 bb69e111b1cc14e1c924bbeda85292f6 141 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 32 121 7.2E-24 T 14-10-2018 IPR031982 Type IV minor pilin ComP Thimo_3164 bb69e111b1cc14e1c924bbeda85292f6 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 31 5.3E-10 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_2525 a9711c150002a7d23ca30706ec278e1f 243 Gene3D G3DSA:1.20.58.220 11 230 2.4E-58 T 14-10-2018 IPR038078 PhoU-like domain superfamily Thimo_2525 a9711c150002a7d23ca30706ec278e1f 243 Pfam PF01895 PhoU domain 133 217 2.0E-11 T 14-10-2018 IPR026022 PhoU domain Thimo_2525 a9711c150002a7d23ca30706ec278e1f 243 Pfam PF01895 PhoU domain 26 112 7.8E-17 T 14-10-2018 IPR026022 PhoU domain Thimo_2525 a9711c150002a7d23ca30706ec278e1f 243 SUPERFAMILY SSF109755 12 233 3.98E-54 T 14-10-2018 Thimo_2525 a9711c150002a7d23ca30706ec278e1f 243 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 226 1.7E-53 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Thimo_2525 a9711c150002a7d23ca30706ec278e1f 243 PIRSF PIRSF003107 9 231 6.0E-51 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 42.35 T 14-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 Gene3D G3DSA:3.30.1490.20 121 190 9.0E-24 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 Gene3D G3DSA:3.40.50.20 2 95 1.6E-36 T 14-10-2018 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 SUPERFAMILY SSF51246 329 423 5.76E-34 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 SMART SM01210 330 423 6.1E-56 T 14-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 Gene3D G3DSA:3.90.600.10 330 428 2.6E-37 T 14-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 6.3E-171 T 14-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 7.0E-75 T 14-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 SUPERFAMILY SSF52440 1 103 7.48E-36 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 5.9E-35 T 14-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 SUPERFAMILY SSF56059 104 325 9.86E-61 T 14-10-2018 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 Gene3D G3DSA:3.30.470.20 191 329 2.2E-57 T 14-10-2018 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 421 4.1E-32 T 14-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 14-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_0189 9e32d64e8013050cc3c7ec93374f4d7b 430 SMART SM01209 103 296 2.7E-127 T 14-10-2018 Thimo_1594 9958e4bdb1f4c34b5334904c6ee51438 773 Gene3D G3DSA:1.25.10.10 571 714 3.1E-6 T 14-10-2018 IPR011989 Armadillo-like helical Thimo_1594 9958e4bdb1f4c34b5334904c6ee51438 773 SUPERFAMILY SSF48371 580 696 4.72E-7 T 14-10-2018 IPR016024 Armadillo-type fold Thimo_1594 9958e4bdb1f4c34b5334904c6ee51438 773 SUPERFAMILY SSF52540 56 246 3.99E-12 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1594 9958e4bdb1f4c34b5334904c6ee51438 773 Pfam PF05729 NACHT domain 78 224 1.7E-12 T 14-10-2018 IPR007111 NACHT nucleoside triphosphatase Thimo_1594 9958e4bdb1f4c34b5334904c6ee51438 773 Gene3D G3DSA:3.40.50.300 45 212 1.0E-12 T 14-10-2018 Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 41 399 4.3E-134 T 14-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 SUPERFAMILY SSF54631 282 397 1.36E-10 T 14-10-2018 Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 Gene3D G3DSA:3.10.580.10 280 400 1.8E-6 T 14-10-2018 Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 Gene3D G3DSA:3.40.50.300 37 279 4.2E-72 T 14-10-2018 Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 SUPERFAMILY SSF52540 47 273 1.28E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 Pfam PF00571 CBS domain 350 397 0.0071 T 14-10-2018 IPR000644 CBS domain Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 Pfam PF00005 ABC transporter 49 196 3.5E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_3657 3ed95471a7f3b9872fb3a94ec403e592 401 SMART SM00382 57 254 1.8E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3041 328fdd3dce7f9776c4696f70d5e10289 354 Pfam PF00445 Ribonuclease T2 family 124 312 2.1E-20 T 14-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 Thimo_3041 328fdd3dce7f9776c4696f70d5e10289 354 Gene3D G3DSA:3.90.730.10 120 351 1.6E-62 T 14-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 Thimo_3041 328fdd3dce7f9776c4696f70d5e10289 354 SUPERFAMILY SSF55895 124 334 2.88E-25 T 14-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 Thimo_3041 328fdd3dce7f9776c4696f70d5e10289 354 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 159 166 - T 14-10-2018 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 Reactome: R-HSA-6798695 Thimo_3041 328fdd3dce7f9776c4696f70d5e10289 354 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 218 229 - T 14-10-2018 IPR033130 Ribonuclease T2, His active site 2 Reactome: R-HSA-6798695 Thimo_0157 d9bad206e6e8ec7be84e1c5ca4458d29 506 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 351 1.4E-5 T 14-10-2018 Thimo_0157 d9bad206e6e8ec7be84e1c5ca4458d29 506 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.4E-5 T 14-10-2018 Thimo_0157 d9bad206e6e8ec7be84e1c5ca4458d29 506 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 66 9.3E-15 T 14-10-2018 Thimo_0157 d9bad206e6e8ec7be84e1c5ca4458d29 506 Gene3D G3DSA:3.50.50.60 4 93 8.5E-22 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0157 d9bad206e6e8ec7be84e1c5ca4458d29 506 SUPERFAMILY SSF51905 1 493 1.85E-57 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0157 d9bad206e6e8ec7be84e1c5ca4458d29 506 Gene3D G3DSA:3.50.50.60 221 330 4.4E-20 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2779 4eb37f19c615f5798410c648baf6a647 343 Gene3D G3DSA:1.10.8.350 45 212 1.8E-104 T 14-10-2018 Thimo_2779 4eb37f19c615f5798410c648baf6a647 343 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 42 336 3.9E-108 T 14-10-2018 IPR011757 Lytic transglycosylase MltB Thimo_2779 4eb37f19c615f5798410c648baf6a647 343 Gene3D G3DSA:1.10.530.10 79 333 1.8E-104 T 14-10-2018 Thimo_2779 4eb37f19c615f5798410c648baf6a647 343 Pfam PF13406 Transglycosylase SLT domain 40 333 3.2E-94 T 14-10-2018 IPR031304 Transglycosylase SLT domain 2 Thimo_2779 4eb37f19c615f5798410c648baf6a647 343 SUPERFAMILY SSF53955 39 338 1.61E-83 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 SUPERFAMILY SSF51011 626 729 3.6E-32 T 14-10-2018 Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 Gene3D G3DSA:2.60.40.10 9 222 1.4E-72 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 SUPERFAMILY SSF81296 22 116 3.04E-13 T 14-10-2018 IPR014756 Immunoglobulin E-set Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 Gene3D G3DSA:2.60.40.1180 625 730 1.8E-35 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 630 727 2.7E-19 T 14-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 102 729 45.473 T 14-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 Gene3D G3DSA:3.20.20.80 236 614 4.0E-168 T 14-10-2018 Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 SMART SM00642 252 612 2.9E-7 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 126 208 8.1E-24 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 SUPERFAMILY SSF51445 181 618 3.6E-117 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 PIRSF PIRSF000463 12 737 5.8E-296 T 14-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 110 726 4.6E-289 T 14-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 SUPERFAMILY SSF81296 139 196 9.8E-12 T 14-10-2018 IPR014756 Immunoglobulin E-set Thimo_3319 73f5dd89d858e1aa3b39abb124761cb4 764 Pfam PF00128 Alpha amylase, catalytic domain 278 349 5.4E-9 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 174 255 7.6E-25 T 14-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 2 254 2.9E-99 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 Gene3D G3DSA:2.160.10.10 1 188 1.9E-55 T 14-10-2018 Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 131 1.8E-7 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 30 63 2.4E-6 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 2 27 0.0018 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 256 42.788 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 PIRSF PIRSF000456 1 256 1.7E-101 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 SUPERFAMILY SSF51161 2 256 1.47E-78 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_0731 3f1949f7b5f4659b71859623c55db135 256 Gene3D G3DSA:1.20.1180.10 191 256 4.6E-21 T 14-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 Thimo_0604 6083905e01c3af9b946a144aa545de0c 329 Pfam PF12833 Helix-turn-helix domain 247 324 4.4E-20 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_0604 6083905e01c3af9b946a144aa545de0c 329 Gene3D G3DSA:1.10.10.60 219 328 8.7E-24 T 14-10-2018 Thimo_0604 6083905e01c3af9b946a144aa545de0c 329 SMART SM00342 240 323 5.3E-25 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_0604 6083905e01c3af9b946a144aa545de0c 329 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 277 319 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Thimo_0604 6083905e01c3af9b946a144aa545de0c 329 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 12 195 4.9E-30 T 14-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Thimo_0604 6083905e01c3af9b946a144aa545de0c 329 SUPERFAMILY SSF46689 277 326 1.75E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Pfam PF00270 DEAD/DEAH box helicase 631 791 8.5E-18 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.90.1150.50 1031 1173 6.7E-42 T 14-10-2018 IPR037235 TRCF-like, C-terminal domain Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Pfam PF00271 Helicase conserved C-terminal domain 831 935 7.9E-16 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Pfam PF03461 TRCF domain 1035 1128 4.4E-26 T 14-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.40.50.300 568 807 1.3E-235 T 14-10-2018 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Pfam PF02559 CarD-like/TRCF domain 506 601 1.7E-24 T 14-10-2018 IPR003711 CarD-like/TRCF domain Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SMART SM00487 626 813 3.0E-33 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.40.50.300 504 1016 1.3E-235 T 14-10-2018 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SMART SM00982 1034 1134 1.5E-47 T 14-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 40 1166 28.21 T 14-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.30.2060.10 152 237 3.7E-114 T 14-10-2018 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF52540 23 360 6.37E-100 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:2.30.30.840 509 567 1.3E-235 T 14-10-2018 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF143517 1021 1172 2.35E-42 T 14-10-2018 IPR037235 TRCF-like, C-terminal domain Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF52540 808 1016 1.01E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SMART SM01058 505 602 3.1E-50 T 14-10-2018 IPR003711 CarD-like/TRCF domain Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF52540 549 810 6.12E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SMART SM00490 852 936 3.6E-16 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF141259 496 574 4.58E-24 T 14-10-2018 IPR036101 CarD-like/TRCF domain superfamily Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.40.50.11140 381 479 1.3E-15 T 14-10-2018 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 170 1108 0.0 T 14-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 Gene3D G3DSA:3.40.50.11180 36 356 3.7E-114 T 14-10-2018 Thimo_2365 b6054b32bb17936a2b232f1d211890ec 1173 SUPERFAMILY SSF52540 378 492 4.2E-28 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3518 01077deca39dc2c69f76a57774da3462 640 PIRSF PIRSF000549 1 640 3.6E-285 T 14-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 Thimo_3518 01077deca39dc2c69f76a57774da3462 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 9.6E-72 T 14-10-2018 IPR010650 PrkA C-terminal domain Thimo_3518 01077deca39dc2c69f76a57774da3462 640 SUPERFAMILY SSF52540 75 344 5.5E-16 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3518 01077deca39dc2c69f76a57774da3462 640 Pfam PF08298 PrkA AAA domain 19 376 8.9E-174 T 14-10-2018 IPR013153 PrkA AAA domain Thimo_3518 01077deca39dc2c69f76a57774da3462 640 SMART SM00763 19 376 1.1E-215 T 14-10-2018 IPR013153 PrkA AAA domain Thimo_1984 3bd358208948b2dcec4a889411161458 828 Gene3D G3DSA:3.40.50.300 372 593 1.6E-51 T 14-10-2018 Thimo_1984 3bd358208948b2dcec4a889411161458 828 SUPERFAMILY SSF52540 310 568 4.14E-16 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1984 3bd358208948b2dcec4a889411161458 828 SMART SM00487 172 389 7.4E-22 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1984 3bd358208948b2dcec4a889411161458 828 SUPERFAMILY SSF52540 162 393 2.82E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1984 3bd358208948b2dcec4a889411161458 828 Gene3D G3DSA:3.90.1570.30 5 151 1.8E-55 T 14-10-2018 Thimo_1984 3bd358208948b2dcec4a889411161458 828 Gene3D G3DSA:3.40.50.300 155 371 9.3E-68 T 14-10-2018 Thimo_1984 3bd358208948b2dcec4a889411161458 828 Pfam PF04851 Type III restriction enzyme, res subunit 175 354 2.3E-41 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Thimo_1984 3bd358208948b2dcec4a889411161458 828 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 41 122 7.3E-9 T 14-10-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain Thimo_1984 3bd358208948b2dcec4a889411161458 828 Pfam PF08463 EcoEI R protein C-terminal 670 824 2.9E-25 T 14-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 Thimo_1184 3cce6135125cd207b37306afea72cfd0 129 Gene3D G3DSA:3.30.230.10 2 129 2.1E-49 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_1184 3cce6135125cd207b37306afea72cfd0 129 SUPERFAMILY SSF54211 5 129 1.21E-45 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1184 3cce6135125cd207b37306afea72cfd0 129 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 129 28.542 T 14-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid Thimo_1184 3cce6135125cd207b37306afea72cfd0 129 ProSitePatterns PS00360 Ribosomal protein S9 signature. 68 86 - T 14-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 Thimo_1184 3cce6135125cd207b37306afea72cfd0 129 Pfam PF00380 Ribosomal protein S9/S16 9 129 2.9E-45 T 14-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 Thimo_3286 f4a827db7810156d359e3a0945e8b144 217 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 158 180 2.4E-5 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_3286 f4a827db7810156d359e3a0945e8b144 217 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 12 35 2.4E-5 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_3286 f4a827db7810156d359e3a0945e8b144 217 Pfam PF01292 Prokaryotic cytochrome b561 10 194 9.5E-21 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_3286 f4a827db7810156d359e3a0945e8b144 217 Gene3D G3DSA:1.20.950.20 2 184 6.2E-16 T 14-10-2018 Thimo_3286 f4a827db7810156d359e3a0945e8b144 217 SUPERFAMILY SSF81342 6 206 7.3E-29 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 623 732 8.9E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 Pfam PF00989 PAS fold 372 486 6.0E-9 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF47384 510 576 3.73E-5 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:1.10.287.130 516 578 6.4E-13 T 14-10-2018 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF55785 362 486 1.18E-21 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:3.30.565.10 581 740 3.2E-37 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF55785 58 176 2.44E-16 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SMART SM00388 511 581 0.0091 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:3.30.450.40 205 366 2.1E-6 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 665 679 2.4E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 683 693 2.4E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 712 2.4E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:3.30.450.20 57 185 4.3E-17 T 14-10-2018 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SMART SM00387 623 734 2.1E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 Pfam PF08448 PAS fold 80 179 1.5E-8 T 14-10-2018 IPR013656 PAS fold-4 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SMART SM00091 372 438 7.3E-8 T 14-10-2018 IPR000014 PAS domain Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SMART SM00091 71 137 1.1E-6 T 14-10-2018 IPR000014 PAS domain Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF55874 568 732 3.14E-35 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 368 496 2.0E-19 T 14-10-2018 IPR000014 PAS domain Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 68 184 8.1E-6 T 14-10-2018 IPR000014 PAS domain Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 SUPERFAMILY SSF55781 218 359 2.4E-7 T 14-10-2018 Thimo_2465 095f3297beddeab7c73f117b53953a0b 744 Gene3D G3DSA:3.30.450.20 367 486 1.3E-22 T 14-10-2018 Thimo_2604 a8649684e6fbfc7eb9f0baa2257cbaf7 480 SUPERFAMILY SSF111283 23 478 1.44E-129 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Thimo_2604 a8649684e6fbfc7eb9f0baa2257cbaf7 480 Pfam PF01523 Putative modulator of DNA gyrase 38 330 1.7E-69 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Thimo_2604 a8649684e6fbfc7eb9f0baa2257cbaf7 480 PIRSF PIRSF004919 18 479 6.4E-140 T 14-10-2018 IPR025502 TldD Thimo_2604 a8649684e6fbfc7eb9f0baa2257cbaf7 480 Gene3D G3DSA:3.30.2290.10 19 238 2.6E-17 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 SUPERFAMILY SSF160246 37 172 1.18E-25 T 14-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 Pfam PF00437 Type II/IV secretion system protein 216 480 6.3E-86 T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 SUPERFAMILY SSF52540 197 586 1.06E-102 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 SMART SM00382 341 462 1.3E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 Gene3D G3DSA:3.30.300.160 92 173 5.4E-15 T 14-10-2018 Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 109 586 1.2E-196 T 14-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 71 176 1.5E-16 T 14-10-2018 IPR007831 General secretory system II, protein E, N-terminal Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 Gene3D G3DSA:3.40.50.300 314 590 2.1E-110 T 14-10-2018 Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 Gene3D G3DSA:1.10.40.70 31 91 3.0E-15 T 14-10-2018 Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 408 422 - T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_0044 cb7ae17c239eb8bc20218ed9c3f549e7 590 Gene3D G3DSA:3.30.450.90 178 313 1.7E-49 T 14-10-2018 Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 Pfam PF13662 Toprim domain 81 171 9.5E-22 T 14-10-2018 IPR006171 TOPRIM domain Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 14-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 Gene3D G3DSA:1.10.8.420 4 52 7.0E-18 T 14-10-2018 Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 96.779 T 14-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 Pfam PF02132 RecR protein 40 78 7.7E-13 T 14-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 SMART SM00493 80 165 8.1E-9 T 14-10-2018 IPR006171 TOPRIM domain Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 Gene3D G3DSA:3.40.1360.10 77 198 6.2E-38 T 14-10-2018 Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 TIGRFAM TIGR00615 recR: recombination protein RecR 5 196 9.6E-74 T 14-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Thimo_2003 2fc163bba8c4bbd953c539b569e5b4f7 198 SUPERFAMILY SSF111304 5 198 6.67E-70 T 14-10-2018 IPR023627 Recombination protein RecR Thimo_3114 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3114 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 3.2E-5 T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3114 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 24.539 T 14-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3114 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3114 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 Pfam PF00953 Glycosyl transferase family 4 99 283 1.0E-37 T 14-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Thimo_3114 2e0458a2a5fa6cc93fcaa083bac3b1d6 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 360 2.0E-135 T 14-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 237 318 2.9E-11 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 197 560 1.1E-87 T 14-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 Pfam PF03572 Peptidase family S41 361 542 2.8E-49 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 550 685 7.6E-26 T 14-10-2018 IPR020992 Tail specific protease, C-terminal Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 SUPERFAMILY SSF52096 179 549 3.31E-63 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 SMART SM00228 244 322 3.6E-6 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 SMART SM00245 327 545 2.0E-56 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 SUPERFAMILY SSF50156 242 321 5.19E-12 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 Gene3D G3DSA:2.30.42.10 233 320 1.0E-12 T 14-10-2018 Thimo_2182 f17475d2466317cf9d172c494b3bbf71 700 Gene3D G3DSA:3.90.226.10 327 562 2.2E-58 T 14-10-2018 Thimo_0882 3070dc6e153f1445ae8e9828a629959a 505 Pfam PF12146 Serine aminopeptidase, S33 50 166 1.4E-13 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 Thimo_0882 3070dc6e153f1445ae8e9828a629959a 505 Gene3D G3DSA:3.40.50.1820 26 248 4.7E-29 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0882 3070dc6e153f1445ae8e9828a629959a 505 SUPERFAMILY SSF53474 28 248 1.77E-27 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0691 5b8978287be85086b8637a5af857b2b7 166 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 6 157 33.661 T 14-10-2018 IPR033747 Class I PurE Thimo_0691 5b8978287be85086b8637a5af857b2b7 166 PIRSF PIRSF001338 1 164 2.1E-70 T 14-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 Thimo_0691 5b8978287be85086b8637a5af857b2b7 166 SMART SM01001 4 153 8.4E-97 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Thimo_0691 5b8978287be85086b8637a5af857b2b7 166 Pfam PF00731 AIR carboxylase 6 150 1.5E-66 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Thimo_0691 5b8978287be85086b8637a5af857b2b7 166 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 6 160 4.1E-66 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Thimo_0691 5b8978287be85086b8637a5af857b2b7 166 SUPERFAMILY SSF52255 4 161 5.23E-66 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Thimo_0691 5b8978287be85086b8637a5af857b2b7 166 Gene3D G3DSA:3.40.50.7700 1 166 3.3E-72 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 Hamap MF_01895 Ribonuclease R [rnr]. 49 729 58.547 T 14-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 SUPERFAMILY SSF50249 648 728 8.29E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 Pfam PF00575 S1 RNA binding domain 645 726 3.5E-13 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 SUPERFAMILY SSF50249 231 645 9.71E-147 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 Gene3D G3DSA:2.40.50.140 649 753 7.6E-23 T 14-10-2018 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 Pfam PF00773 RNB domain 271 599 9.5E-107 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 SMART SM00357 161 225 6.9 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 SMART SM00357 97 156 3.5E-16 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 79 727 4.6E-231 T 14-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 TIGRFAM TIGR02063 RNase_R: ribonuclease R 30 728 3.1E-267 T 14-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 SUPERFAMILY SSF50249 78 158 1.98E-20 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 SMART SM00955 271 600 4.6E-180 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 ProSitePatterns PS01175 Ribonuclease II family signature. 567 591 - T 14-10-2018 IPR022966 Ribonuclease II/R, conserved site Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 Pfam PF08206 Ribonuclease B OB domain 98 155 5.8E-21 T 14-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 Gene3D G3DSA:2.40.50.140 87 159 5.5E-19 T 14-10-2018 Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 SUPERFAMILY SSF50249 149 247 6.85E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2332 624c5cf8bfea17f89e25234d4a869875 754 SMART SM00316 646 729 3.0E-13 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 614 721 1.1E-12 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 511 609 1.4E-18 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 SUPERFAMILY SSF53738 366 495 2.47E-33 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 Gene3D G3DSA:3.30.310.50 725 819 1.6E-19 T 14-10-2018 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 Gene3D G3DSA:3.40.120.10 356 507 1.7E-46 T 14-10-2018 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 SUPERFAMILY SSF53738 509 611 9.03E-20 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 742 807 6.5E-8 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 SUPERFAMILY SSF53738 614 720 2.83E-25 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 SUPERFAMILY SSF55957 726 818 2.79E-16 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 Gene3D G3DSA:3.40.120.10 607 723 9.1E-32 T 14-10-2018 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 589 604 1.9E-10 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 454 468 1.9E-10 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 525 544 1.9E-10 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 366 496 1.2E-27 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0741 e92cf00aacb55b2dc03d9196a056383c 819 Gene3D G3DSA:3.40.120.10 527 605 4.9E-20 T 14-10-2018 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 SUPERFAMILY SSF54719 82 192 8.51E-44 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 4.1E-23 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.1E-23 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.1E-23 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.1E-23 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.1E-23 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 Gene3D G3DSA:1.10.287.990 20 82 6.0E-27 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 1.1E-40 T 14-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 14-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 Gene3D G3DSA:2.40.500.20 84 193 5.2E-44 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 SUPERFAMILY SSF46609 1 83 8.38E-37 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 3.0E-34 T 14-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3337 e8c333db1250d31ac6b9b90a488853ed 193 PIRSF PIRSF000349 1 193 2.7E-84 T 14-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 Gene3D G3DSA:3.30.565.10 1 230 1.7E-74 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 SUPERFAMILY SSF55874 8 216 9.69E-64 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 29 51 9.1E-60 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 78 95 9.1E-60 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 123 145 9.1E-60 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 8 28 9.1E-60 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 175 192 9.1E-60 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 96 113 9.1E-60 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 PRINTS PR00775 90kDa heat shock protein signature 193 211 9.1E-60 T 14-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 14-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 Gene3D G3DSA:3.40.50.11260 405 494 4.3E-32 T 14-10-2018 Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 632 32.305 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 SMART SM00387 30 187 3.6E-9 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 PIRSF PIRSF002583 2 638 2.9E-211 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 SUPERFAMILY SSF54211 239 493 8.34E-97 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 Gene3D G3DSA:1.20.120.790 500 633 8.4E-45 T 14-10-2018 IPR037196 HSP90, C-terminal domain Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 186 8.2E-12 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 Pfam PF00183 Hsp90 protein 221 635 6.8E-130 T 14-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 Gene3D G3DSA:3.30.230.80 238 404 1.5E-67 T 14-10-2018 Thimo_3042 6a22d378d32541b95ef64380f75f287d 639 SUPERFAMILY SSF110942 520 632 8.76E-37 T 14-10-2018 IPR037196 HSP90, C-terminal domain Thimo_0462 6399ba687bebffea6c326703d96d79e2 191 Pfam PF05685 Putative restriction endonuclease 12 160 7.8E-29 T 14-10-2018 IPR008538 Domain of unknown function DUF820 Thimo_0462 6399ba687bebffea6c326703d96d79e2 191 Gene3D G3DSA:3.90.1570.10 4 183 7.7E-20 T 14-10-2018 Thimo_0462 6399ba687bebffea6c326703d96d79e2 191 SUPERFAMILY SSF52980 7 179 1.23E-26 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_3672 829e26b36a283c83fec39a365f14c4b8 138 SMART SM00450 35 132 3.2E-25 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_3672 829e26b36a283c83fec39a365f14c4b8 138 Gene3D G3DSA:3.40.250.10 36 138 7.0E-30 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_3672 829e26b36a283c83fec39a365f14c4b8 138 Pfam PF00581 Rhodanese-like domain 39 128 8.7E-18 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_3672 829e26b36a283c83fec39a365f14c4b8 138 SUPERFAMILY SSF52821 10 135 3.67E-35 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_0151 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:1.10.1060.10 3 142 1.9E-18 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0151 9e86afbd817778925d34889688163aa8 653 SUPERFAMILY SSF51971 144 416 5.24E-48 T 14-10-2018 Thimo_0151 9e86afbd817778925d34889688163aa8 653 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 45 135 3.2E-13 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Thimo_0151 9e86afbd817778925d34889688163aa8 653 Pfam PF12838 4Fe-4S dicluster domain 596 645 8.2E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0151 9e86afbd817778925d34889688163aa8 653 SUPERFAMILY SSF54862 48 649 3.89E-17 T 14-10-2018 Thimo_0151 9e86afbd817778925d34889688163aa8 653 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 466 4.8E-20 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_0151 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:3.50.50.60 143 261 6.8E-31 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0151 9e86afbd817778925d34889688163aa8 653 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 632 643 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0151 9e86afbd817778925d34889688163aa8 653 SUPERFAMILY SSF46548 47 156 4.03E-16 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0151 9e86afbd817778925d34889688163aa8 653 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 2.5E-16 T 14-10-2018 Thimo_0151 9e86afbd817778925d34889688163aa8 653 PRINTS PR00419 Adrenodoxin reductase family signature 147 169 2.5E-16 T 14-10-2018 Thimo_0151 9e86afbd817778925d34889688163aa8 653 PRINTS PR00419 Adrenodoxin reductase family signature 170 183 2.5E-16 T 14-10-2018 Thimo_0151 9e86afbd817778925d34889688163aa8 653 PRINTS PR00419 Adrenodoxin reductase family signature 280 294 2.5E-16 T 14-10-2018 Thimo_0151 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:3.30.70.20 581 650 2.0E-9 T 14-10-2018 Thimo_0151 9e86afbd817778925d34889688163aa8 653 Gene3D G3DSA:3.50.50.60 313 415 8.0E-20 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0188 eef0449418f5ecaccfc3df1504e35ada 274 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 175 254 4.3E-27 T 14-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 Thimo_0188 eef0449418f5ecaccfc3df1504e35ada 274 Gene3D G3DSA:1.20.1180.10 192 255 3.1E-19 T 14-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 Thimo_0188 eef0449418f5ecaccfc3df1504e35ada 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 138 1.5E-7 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0188 eef0449418f5ecaccfc3df1504e35ada 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 47 5.2E-6 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0188 eef0449418f5ecaccfc3df1504e35ada 274 Gene3D G3DSA:2.160.10.10 1 191 2.0E-46 T 14-10-2018 Thimo_0188 eef0449418f5ecaccfc3df1504e35ada 274 PIRSF PIRSF000456 1 263 1.9E-96 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Thimo_0188 eef0449418f5ecaccfc3df1504e35ada 274 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 3 254 5.5E-97 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Thimo_0188 eef0449418f5ecaccfc3df1504e35ada 274 SUPERFAMILY SSF51161 2 254 2.36E-64 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_0831 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 SMART SM00704 165 214 1.7E-5 T 14-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 Thimo_0831 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 SMART SM00704 94 139 2.5E-6 T 14-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 Thimo_0831 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Gene3D G3DSA:3.40.5.90 84 144 2.5E-12 T 14-10-2018 Thimo_0831 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Gene3D G3DSA:3.40.5.90 157 216 3.4E-15 T 14-10-2018 Thimo_0831 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Pfam PF06902 Divergent 4Fe-4S mono-cluster 9 72 1.2E-21 T 14-10-2018 IPR010693 Divergent 4Fe-4S mono-cluster Thimo_0831 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Pfam PF09360 Iron-binding zinc finger CDGSH type 165 209 8.6E-16 T 14-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 Thimo_0831 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Pfam PF09360 Iron-binding zinc finger CDGSH type 90 133 3.1E-15 T 14-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 Thimo_0831 e45f7ca1bb026d3cbfdf6a2b32e6a0d7 216 Gene3D G3DSA:3.30.70.20 15 70 4.8E-5 T 14-10-2018 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 Pfam PF00571 CBS domain 147 202 6.1E-6 T 14-10-2018 IPR000644 CBS domain Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 Pfam PF00571 CBS domain 94 138 8.0E-11 T 14-10-2018 IPR000644 CBS domain Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 454 4.8E-193 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 486 84.409 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 SUPERFAMILY SSF51412 2 477 1.09E-122 T 14-10-2018 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 293 305 - T 14-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 SMART SM00116 95 142 2.9E-12 T 14-10-2018 IPR000644 CBS domain Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 SMART SM00116 156 204 5.8E-8 T 14-10-2018 IPR000644 CBS domain Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 PIRSF PIRSF000130 1 488 1.8E-202 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 Gene3D G3DSA:3.20.20.70 1 486 2.1E-209 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 SMART SM01240 6 473 0.0 T 14-10-2018 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 SUPERFAMILY SSF54631 93 202 2.53E-28 T 14-10-2018 Thimo_3598 f0793156cdbf8d66c69687f3cc50f3d7 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 473 1.2E-160 T 14-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Thimo_1201 d39bc48a2066e20268625315ef06648c 163 Gene3D G3DSA:3.30.70.640 1 160 3.5E-67 T 14-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_1201 d39bc48a2066e20268625315ef06648c 163 SUPERFAMILY SSF55040 11 155 6.02E-59 T 14-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_1201 d39bc48a2066e20268625315ef06648c 163 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 8.9E-60 T 14-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_1201 d39bc48a2066e20268625315ef06648c 163 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 35.456 T 14-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_1201 d39bc48a2066e20268625315ef06648c 163 Pfam PF01967 MoaC family 15 150 1.6E-53 T 14-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 SUPERFAMILY SSF52540 84 362 1.58E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 Gene3D G3DSA:3.40.50.300 2 222 1.5E-73 T 14-10-2018 Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 Pfam PF00270 DEAD/DEAH box helicase 33 206 2.9E-45 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 53.388 T 14-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 SMART SM00487 28 234 8.0E-56 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 SMART SM00490 270 351 3.6E-31 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 Gene3D G3DSA:3.40.50.300 226 411 2.0E-45 T 14-10-2018 Thimo_2084 8ad8281c006b8fd690f878f7ae345f6c 489 Pfam PF00271 Helicase conserved C-terminal domain 243 351 9.5E-29 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 Pfam PF07650 KH domain 38 111 2.4E-19 T 14-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 SUPERFAMILY SSF54814 2 106 1.62E-38 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 Gene3D G3DSA:3.30.1140.32 108 208 4.7E-44 T 14-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 14-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 SMART SM00322 60 125 3.8E-8 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 Gene3D G3DSA:3.30.300.20 17 107 1.3E-30 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 8.5E-98 T 14-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.9E-40 T 14-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 SUPERFAMILY SSF54821 108 206 5.89E-40 T 14-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2854 9533affbdfea6ed0c5119eae34bf2719 228 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.643 T 14-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 SMART SM00382 237 433 1.1E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 Gene3D G3DSA:3.40.50.300 202 481 3.1E-60 T 14-10-2018 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 SUPERFAMILY SSF52540 207 441 3.19E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 SUPERFAMILY SSF49879 17 93 2.9E-12 T 14-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 Pfam PF00005 ABC transporter 228 378 3.6E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 SMART SM00240 120 170 1.1E-16 T 14-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 SMART SM00240 23 72 2.6 T 14-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 Gene3D G3DSA:2.60.200.20 4 95 1.5E-8 T 14-10-2018 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 Pfam PF01061 ABC-2 type transporter 507 709 8.7E-19 T 14-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 ProSitePatterns PS00211 ABC transporters family signature. 350 364 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 SUPERFAMILY SSF49879 118 199 1.38E-26 T 14-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 Pfam PF00498 FHA domain 122 184 1.1E-18 T 14-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Thimo_1537 f191e260f7b2a5373238c9ac51be74d9 761 Gene3D G3DSA:2.60.200.20 96 194 1.1E-25 T 14-10-2018 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 Gene3D G3DSA:3.40.50.300 5 180 1.7E-49 T 14-10-2018 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 162 3.4E-14 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 Pfam PF07664 Ferrous iron transport protein B C terminus 459 511 2.2E-22 T 14-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 28 46 1.3E-6 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 7 27 1.3E-6 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 SUPERFAMILY SSF52540 5 168 5.26E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 Pfam PF02421 Ferrous iron transport protein B 6 162 9.8E-65 T 14-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 11 705 2.0E-187 T 14-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 Pfam PF07670 Nucleoside recognition 356 448 3.3E-15 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Thimo_1795 dc7dc3c649d5fd74ee3dc91f34295776 778 Pfam PF07670 Nucleoside recognition 516 706 2.9E-33 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 SMART SM00924 36 139 1.2E-33 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 SUPERFAMILY SSF161093 280 451 1.03E-45 T 14-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 SMART SM00116 146 199 5.4 T 14-10-2018 IPR000644 CBS domain Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 SMART SM00116 210 258 0.01 T 14-10-2018 IPR000644 CBS domain Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 Gene3D G3DSA:1.25.60.10 9 134 1.1E-19 T 14-10-2018 IPR038076 MgtE, N-terminal domain superfamily Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 Gene3D G3DSA:3.10.580.10 135 262 9.5E-35 T 14-10-2018 Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 SUPERFAMILY SSF54631 139 278 8.34E-27 T 14-10-2018 Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 Gene3D G3DSA:1.10.357.20 278 451 2.7E-46 T 14-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 Pfam PF03448 MgtE intracellular N domain 36 137 2.4E-26 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 Pfam PF00571 CBS domain 139 195 1.0E-4 T 14-10-2018 IPR000644 CBS domain Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 Pfam PF00571 CBS domain 203 257 5.5E-5 T 14-10-2018 IPR000644 CBS domain Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 SUPERFAMILY SSF158791 10 136 1.96E-29 T 14-10-2018 Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 Pfam PF01769 Divalent cation transporter 323 444 2.1E-24 T 14-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Thimo_2530 c06abbb8b414d7c657fc83ce7a427411 452 TIGRFAM TIGR00400 mgtE: magnesium transporter 20 451 1.8E-92 T 14-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Thimo_3011 47a5a1425a04b474c18a4d3156e4786c 376 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 162 187 - T 14-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Thimo_3011 47a5a1425a04b474c18a4d3156e4786c 376 Gene3D G3DSA:1.10.600.10 7 289 8.8E-75 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_3011 47a5a1425a04b474c18a4d3156e4786c 376 Pfam PF00494 Squalene/phytoene synthase 23 272 7.2E-68 T 14-10-2018 Thimo_3011 47a5a1425a04b474c18a4d3156e4786c 376 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 132 147 - T 14-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Thimo_3011 47a5a1425a04b474c18a4d3156e4786c 376 SUPERFAMILY SSF48576 15 289 1.73E-75 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 Pfam PF00482 Type II secretion system (T2SS), protein F 279 396 1.8E-23 T 14-10-2018 IPR018076 Type II secretion system F domain Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 Pfam PF00482 Type II secretion system (T2SS), protein F 75 197 8.2E-27 T 14-10-2018 IPR018076 Type II secretion system F domain Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 169 197 - T 14-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 Gene3D G3DSA:1.20.81.30 64 176 7.0E-26 T 14-10-2018 Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 Gene3D G3DSA:1.20.81.30 260 374 2.1E-22 T 14-10-2018 Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 169 197 9.7E-11 T 14-10-2018 IPR003004 GspF/PilC family Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 387 405 9.7E-11 T 14-10-2018 IPR003004 GspF/PilC family Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 371 385 9.7E-11 T 14-10-2018 IPR003004 GspF/PilC family Thimo_0650 aa68bbad07fe4efb96b551eae3bd9d4e 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 70 82 9.7E-11 T 14-10-2018 IPR003004 GspF/PilC family Thimo_0281 6599150d88fc72c94dd627112e7a3b47 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 2.3E-27 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Thimo_0281 6599150d88fc72c94dd627112e7a3b47 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 7.5E-30 T 14-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 Thimo_0281 6599150d88fc72c94dd627112e7a3b47 89 PIRSF PIRSF004669 1 89 6.3E-31 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Thimo_0281 6599150d88fc72c94dd627112e7a3b47 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.1E-20 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Thimo_0281 6599150d88fc72c94dd627112e7a3b47 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.1E-20 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Thimo_0281 6599150d88fc72c94dd627112e7a3b47 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.1E-20 T 14-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Thimo_2204 9a08590b07a591f759eb457d784db58e 345 PIRSF PIRSF006621 22 332 5.4E-74 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Thimo_2204 9a08590b07a591f759eb457d784db58e 345 Gene3D G3DSA:1.20.120.1460 273 341 5.2E-20 T 14-10-2018 Thimo_2204 9a08590b07a591f759eb457d784db58e 345 Pfam PF01207 Dihydrouridine synthase (Dus) 33 337 5.2E-84 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Thimo_2204 9a08590b07a591f759eb457d784db58e 345 Gene3D G3DSA:3.20.20.70 27 269 1.4E-78 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_2204 9a08590b07a591f759eb457d784db58e 345 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 112 130 - T 14-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Thimo_2204 9a08590b07a591f759eb457d784db58e 345 SUPERFAMILY SSF51395 29 327 8.37E-78 T 14-10-2018 Thimo_2204 9a08590b07a591f759eb457d784db58e 345 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 25 345 51.898 T 14-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 Thimo_2204 9a08590b07a591f759eb457d784db58e 345 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 30 341 1.4E-136 T 14-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 Thimo_0768 120fbb2dea81c10b9f1fe08a3b480870 335 Gene3D G3DSA:3.40.50.920 177 308 7.3E-28 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_0768 120fbb2dea81c10b9f1fe08a3b480870 335 SMART SM00861 2 166 5.2E-29 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_0768 120fbb2dea81c10b9f1fe08a3b480870 335 Pfam PF02780 Transketolase, C-terminal domain 178 297 1.4E-16 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Thimo_0768 120fbb2dea81c10b9f1fe08a3b480870 335 Pfam PF02779 Transketolase, pyrimidine binding domain 12 165 8.2E-24 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_0768 120fbb2dea81c10b9f1fe08a3b480870 335 SUPERFAMILY SSF52922 177 306 2.75E-22 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_0768 120fbb2dea81c10b9f1fe08a3b480870 335 Gene3D G3DSA:3.40.50.970 4 173 5.5E-49 T 14-10-2018 Thimo_0768 120fbb2dea81c10b9f1fe08a3b480870 335 SUPERFAMILY SSF52518 10 167 2.91E-45 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0372 f33c3845b584569256b20277fb6f9920 301 Pfam PF08443 RimK-like ATP-grasp domain 98 285 2.6E-67 T 14-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Thimo_0372 f33c3845b584569256b20277fb6f9920 301 Gene3D G3DSA:3.40.50.20 1 114 5.6E-40 T 14-10-2018 Thimo_0372 f33c3845b584569256b20277fb6f9920 301 Gene3D G3DSA:3.30.470.80 182 296 7.3E-41 T 14-10-2018 Thimo_0372 f33c3845b584569256b20277fb6f9920 301 SUPERFAMILY SSF56059 98 288 3.03E-48 T 14-10-2018 Thimo_0372 f33c3845b584569256b20277fb6f9920 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 2.7E-84 T 14-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 Thimo_0372 f33c3845b584569256b20277fb6f9920 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 54.197 T 14-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK Thimo_0372 f33c3845b584569256b20277fb6f9920 301 Gene3D G3DSA:3.30.1490.20 115 181 3.3E-26 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_3489 82f081ce010eb05ea5836477ab6246a1 232 Pfam PF08241 Methyltransferase domain 38 140 2.1E-10 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_3489 82f081ce010eb05ea5836477ab6246a1 232 Gene3D G3DSA:3.40.50.150 34 207 7.3E-22 T 14-10-2018 Thimo_3489 82f081ce010eb05ea5836477ab6246a1 232 SUPERFAMILY SSF53335 20 192 9.45E-23 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1457 9e23f1b2a8478f6b3db6a96401161778 176 Gene3D G3DSA:1.20.144.10 97 176 1.2E-16 T 14-10-2018 Thimo_1457 9e23f1b2a8478f6b3db6a96401161778 176 SUPERFAMILY SSF48317 20 175 6.67E-33 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Thimo_1457 9e23f1b2a8478f6b3db6a96401161778 176 Pfam PF01569 PAP2 superfamily 68 170 5.7E-18 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Thimo_1457 9e23f1b2a8478f6b3db6a96401161778 176 SMART SM00014 63 172 4.5E-12 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Thimo_2722 92b928996c4cf626ee74ddc4d95151ca 140 SUPERFAMILY SSF88723 2 126 8.83E-8 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_2722 92b928996c4cf626ee74ddc4d95151ca 140 Pfam PF13470 PIN domain 2 113 6.8E-17 T 14-10-2018 IPR002716 PIN domain Thimo_2722 92b928996c4cf626ee74ddc4d95151ca 140 TIGRFAM TIGR00305 TIGR00305: putative toxin-antitoxin system toxin component, PIN family 2 118 5.4E-16 T 14-10-2018 IPR002850 PIN family, putative toxin-antitoxin system toxin component Thimo_3221 e2aa2efa060b5d8a640a50c3ad2c667b 128 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 1 120 1.1E-50 T 14-10-2018 IPR009387 Toxin HigB-2 Thimo_3221 e2aa2efa060b5d8a640a50c3ad2c667b 128 PIRSF PIRSF018634 1 124 4.5E-51 T 14-10-2018 IPR009387 Toxin HigB-2 Thimo_2971 96f97773cdd1cecfdec7cce73bca936e 236 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 7 229 54.676 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Thimo_2971 96f97773cdd1cecfdec7cce73bca936e 236 Pfam PF06508 Queuosine biosynthesis protein QueC 8 223 3.3E-74 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Thimo_2971 96f97773cdd1cecfdec7cce73bca936e 236 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 9 216 2.4E-60 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Thimo_2971 96f97773cdd1cecfdec7cce73bca936e 236 PIRSF PIRSF006293 6 233 4.6E-75 T 14-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Thimo_2971 96f97773cdd1cecfdec7cce73bca936e 236 Gene3D G3DSA:3.40.50.620 6 232 7.0E-74 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2971 96f97773cdd1cecfdec7cce73bca936e 236 SUPERFAMILY SSF52402 8 230 1.08E-62 T 14-10-2018 Thimo_1701 04742a7394d4fb5e3de71e3e0228b59b 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 53 3.7E-12 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1701 04742a7394d4fb5e3de71e3e0228b59b 320 SUPERFAMILY SSF53850 79 289 5.25E-36 T 14-10-2018 Thimo_1701 04742a7394d4fb5e3de71e3e0228b59b 320 SUPERFAMILY SSF46785 2 102 2.72E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1701 04742a7394d4fb5e3de71e3e0228b59b 320 Pfam PF03466 LysR substrate binding domain 78 287 1.0E-32 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_1701 04742a7394d4fb5e3de71e3e0228b59b 320 Gene3D G3DSA:1.10.10.10 1 79 1.1E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1701 04742a7394d4fb5e3de71e3e0228b59b 320 Gene3D G3DSA:3.40.190.290 81 287 7.9E-51 T 14-10-2018 Thimo_3086 fe44743164eeb0743bae58a4fbe937d1 469 TIGRFAM TIGR03790 TIGR03790: TIGR03790 family protein 56 343 1.4E-69 T 14-10-2018 IPR022265 Conserved hypothetical protein CHP03790 Thimo_2216 b2f52fda0d124817cd89cc3449a42aec 480 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 14 471 4.7E-196 T 14-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 Thimo_2216 b2f52fda0d124817cd89cc3449a42aec 480 Pfam PF01458 Uncharacterized protein family (UPF0051) 218 451 1.1E-70 T 14-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 Thimo_2216 b2f52fda0d124817cd89cc3449a42aec 480 SUPERFAMILY SSF101960 36 477 1.44E-140 T 14-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Thimo_0047 d18dc354f297e48b3f05fc77b3c3947b 159 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0047 d18dc354f297e48b3f05fc77b3c3947b 159 Pfam PF12019 Type II transport protein GspH 49 144 2.2E-8 T 14-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Thimo_0047 d18dc354f297e48b3f05fc77b3c3947b 159 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 10 147 5.3E-19 T 14-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Thimo_0047 d18dc354f297e48b3f05fc77b3c3947b 159 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 33 8.4E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0047 d18dc354f297e48b3f05fc77b3c3947b 159 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 32 6.9E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0047 d18dc354f297e48b3f05fc77b3c3947b 159 Gene3D G3DSA:3.30.700.10 14 146 8.0E-6 T 14-10-2018 Thimo_0047 d18dc354f297e48b3f05fc77b3c3947b 159 SUPERFAMILY SSF54523 14 141 6.36E-15 T 14-10-2018 Thimo_1057 379457f370a16759b8cb982ddc93bc73 341 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2 337 1.5E-122 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Thimo_1057 379457f370a16759b8cb982ddc93bc73 341 SUPERFAMILY SSF111337 5 337 9.55E-127 T 14-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Thimo_1057 379457f370a16759b8cb982ddc93bc73 341 Pfam PF02547 Queuosine biosynthesis protein 4 337 8.8E-126 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Thimo_1057 379457f370a16759b8cb982ddc93bc73 341 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 338 44.812 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Thimo_1057 379457f370a16759b8cb982ddc93bc73 341 Gene3D G3DSA:3.40.1780.10 14 336 5.5E-108 T 14-10-2018 Thimo_1057 379457f370a16759b8cb982ddc93bc73 341 Gene3D G3DSA:2.40.10.240 64 160 5.5E-108 T 14-10-2018 Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 14 663 1.6E-202 T 14-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 SUPERFAMILY SSF51445 138 576 8.53E-126 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 SUPERFAMILY SSF51011 590 688 1.15E-17 T 14-10-2018 Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 SMART SM00642 135 569 2.3E-9 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 Pfam PF00128 Alpha amylase, catalytic domain 178 527 4.3E-14 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 17 108 2.5E-11 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 Gene3D G3DSA:3.20.20.80 138 583 6.8E-178 T 14-10-2018 Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 Gene3D G3DSA:2.60.40.10 2 137 1.1E-33 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 Gene3D G3DSA:2.60.40.1180 590 689 2.3E-17 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta Thimo_0920 5ea0f69145d892c195cad9aef9590690 692 SUPERFAMILY SSF81296 11 148 2.16E-28 T 14-10-2018 IPR014756 Immunoglobulin E-set Thimo_3283 9802e64886b69f5153351579eef9f53e 392 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 4 388 69.933 T 14-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Thimo_3283 9802e64886b69f5153351579eef9f53e 392 Gene3D G3DSA:3.90.1150.10 13 379 1.8E-140 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_3283 9802e64886b69f5153351579eef9f53e 392 PIRSF PIRSF000521 2 148 1.0E-11 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_3283 9802e64886b69f5153351579eef9f53e 392 PIRSF PIRSF000521 162 388 8.4E-37 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_3283 9802e64886b69f5153351579eef9f53e 392 Gene3D G3DSA:3.40.640.10 48 294 1.8E-140 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_3283 9802e64886b69f5153351579eef9f53e 392 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 5 383 2.4E-142 T 14-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Thimo_3283 9802e64886b69f5153351579eef9f53e 392 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 212 249 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_3283 9802e64886b69f5153351579eef9f53e 392 Pfam PF00202 Aminotransferase class-III 11 382 9.6E-112 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_3283 9802e64886b69f5153351579eef9f53e 392 SUPERFAMILY SSF53383 6 385 1.01E-126 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2930 d9b8818b8af5a010aa5d23e9f2944b70 689 Pfam PF13519 von Willebrand factor type A domain 93 200 8.8E-12 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_2930 d9b8818b8af5a010aa5d23e9f2944b70 689 SUPERFAMILY SSF48452 381 454 8.41E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2930 d9b8818b8af5a010aa5d23e9f2944b70 689 SMART SM00028 405 438 0.0014 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_2930 d9b8818b8af5a010aa5d23e9f2944b70 689 SUPERFAMILY SSF53300 93 279 1.83E-14 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_2930 d9b8818b8af5a010aa5d23e9f2944b70 689 Gene3D G3DSA:3.40.50.410 85 285 4.0E-30 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_2930 d9b8818b8af5a010aa5d23e9f2944b70 689 SMART SM00327 89 261 0.0063 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_2930 d9b8818b8af5a010aa5d23e9f2944b70 689 Gene3D G3DSA:1.25.40.10 405 460 2.5E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2348 74555fb03ca8b5ce2e3d8a595995325b 139 Pfam PF00472 RF-1 domain 7 133 1.2E-21 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Thimo_2348 74555fb03ca8b5ce2e3d8a595995325b 139 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Thimo_2348 74555fb03ca8b5ce2e3d8a595995325b 139 SUPERFAMILY SSF110916 15 101 7.32E-11 T 14-10-2018 Thimo_2348 74555fb03ca8b5ce2e3d8a595995325b 139 Gene3D G3DSA:3.30.160.20 1 137 2.9E-39 T 14-10-2018 Thimo_0070 cd71d520b9c64494bd0c9ad64a19de09 210 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 5 205 25.314 T 14-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Thimo_0070 cd71d520b9c64494bd0c9ad64a19de09 210 Gene3D G3DSA:3.20.20.70 3 205 1.8E-59 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0070 cd71d520b9c64494bd0c9ad64a19de09 210 SUPERFAMILY SSF51391 4 203 2.62E-61 T 14-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Thimo_0070 cd71d520b9c64494bd0c9ad64a19de09 210 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 7 198 2.3E-55 T 14-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Thimo_0070 cd71d520b9c64494bd0c9ad64a19de09 210 Pfam PF02581 Thiamine monophosphate synthase 7 186 7.2E-52 T 14-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Thimo_1549 c03f6bf10220f0bff83e2c71e33a5220 408 Gene3D G3DSA:1.20.1530.20 1 406 1.5E-85 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily Thimo_1549 c03f6bf10220f0bff83e2c71e33a5220 408 Pfam PF00999 Sodium/hydrogen exchanger family 8 403 2.9E-62 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 SUPERFAMILY SSF53623 101 319 3.01E-71 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 SUPERFAMILY SSF51984 16 102 1.05E-26 T 14-10-2018 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 SUPERFAMILY SSF53244 320 468 4.58E-45 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 Pfam PF01225 Mur ligase family, catalytic domain 18 116 2.6E-25 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 Pfam PF02875 Mur ligase family, glutamate ligase domain 335 410 4.1E-20 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 15 473 42.893 T 14-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 18 463 3.0E-165 T 14-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 Gene3D G3DSA:3.40.50.720 16 103 3.6E-30 T 14-10-2018 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 Gene3D G3DSA:3.40.1190.10 104 318 1.7E-81 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 Gene3D G3DSA:3.90.190.20 319 473 3.1E-47 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3110 f0a80cc36ba43d0d3a1620f601723bce 477 Pfam PF08245 Mur ligase middle domain 120 301 2.5E-28 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 Gene3D G3DSA:1.10.166.10 1 70 5.7E-28 T 14-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 SUPERFAMILY SSF51161 2 256 7.18E-72 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 1.7E-13 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 Gene3D G3DSA:2.160.10.10 87 257 2.3E-54 T 14-10-2018 Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.001 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 55.73 T 14-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 5 69 4.2E-24 T 14-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 5 273 9.3E-143 T 14-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 Thimo_1206 c08d05846e6bddd118b17b63678ef485 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.130.10.10 618 864 3.8E-12 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 SMART SM00089 1323 1416 0.0015 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.60.120.200 925 1118 1.2E-42 T 14-10-2018 Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 960 1112 1.6E-36 T 14-10-2018 Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 Pfam PF16640 Bacterial Ig-like domain (group 3) 1644 1733 1.7E-17 T 14-10-2018 IPR032109 Bacterial Ig-like domain (group 3) Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.60.40.10 1641 1732 4.2E-8 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF49299 1314 1419 3.14E-8 T 14-10-2018 IPR035986 PKD domain superfamily Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 SMART SM00560 978 1110 2.0E-12 T 14-10-2018 IPR006558 LamG-like jellyroll fold Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.130.10.10 87 196 1.1E-12 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF110296 643 840 3.14E-11 T 14-10-2018 Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.130.10.10 197 465 5.4E-15 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 Gene3D G3DSA:2.60.40.10 1329 1419 2.2E-8 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF110296 74 395 3.4E-36 T 14-10-2018 Thimo_0605 a0b2af4307edc34dad9000e57dd3831a 1846 SUPERFAMILY SSF49899 917 1118 7.5E-44 T 14-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 Gene3D G3DSA:3.30.1330.20 221 331 3.8E-36 T 14-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 326 2.2E-130 T 14-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 14-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 PRINTS PR00423 Cell division protein FtsZ signature 126 147 1.7E-50 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 PRINTS PR00423 Cell division protein FtsZ signature 98 118 1.7E-50 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 PRINTS PR00423 Cell division protein FtsZ signature 212 233 1.7E-50 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 PRINTS PR00423 Cell division protein FtsZ signature 189 211 1.7E-50 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 SMART SM00865 207 325 8.7E-58 T 14-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 346 37.733 T 14-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 172 7.8E-37 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 14-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 SUPERFAMILY SSF55307 204 319 9.39E-43 T 14-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 Gene3D G3DSA:3.40.50.1440 3 220 4.4E-78 T 14-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 SMART SM00864 13 205 1.5E-108 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 SUPERFAMILY SSF52490 13 208 3.14E-67 T 14-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Thimo_3105 c022bd1e81752090d108ebde5c4cfbb9 394 Pfam PF12327 FtsZ family, C-terminal domain 222 316 5.7E-37 T 14-10-2018 IPR024757 Cell division protein FtsZ, C-terminal Thimo_1783 8789b7a4538f4ab9eb6145607663ab6b 278 Pfam PF02649 Type I GTP cyclohydrolase folE2 15 263 1.7E-98 T 14-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Thimo_1783 8789b7a4538f4ab9eb6145607663ab6b 278 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 14 268 38.305 T 14-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Thimo_1783 8789b7a4538f4ab9eb6145607663ab6b 278 Gene3D G3DSA:3.10.270.10 12 267 1.2E-103 T 14-10-2018 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 ProSitePatterns PS00746 NifH/frxC family signature 1. 125 137 - T 14-10-2018 IPR030655 NifH/chlL conserved site Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 42 302 2.1E-95 T 14-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 ProSitePatterns PS00692 NifH/frxC family signature 2. 163 176 - T 14-10-2018 IPR030655 NifH/chlL conserved site Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 PRINTS PR00091 Nitrogenase component II signature 123 137 1.9E-26 T 14-10-2018 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 PRINTS PR00091 Nitrogenase component II signature 46 59 1.9E-26 T 14-10-2018 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 PRINTS PR00091 Nitrogenase component II signature 68 83 1.9E-26 T 14-10-2018 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 PRINTS PR00091 Nitrogenase component II signature 162 177 1.9E-26 T 14-10-2018 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 PIRSF PIRSF000363 39 307 3.2E-89 T 14-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 TIGRFAM TIGR02016 BchX: chlorophyllide reductase iron protein subunit X 41 322 1.7E-127 T 14-10-2018 IPR010246 Chlorophyllide reductase iron protein subunit X GO:0005524|GO:0015979|GO:0016628|GO:0030494|GO:0051539 KEGG: 00860+1.3.7.15|MetaCyc: PWY-5526 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 Gene3D G3DSA:3.40.50.300 41 302 1.0E-46 T 14-10-2018 Thimo_3005 6630e0ef89672aa3fa88ea791f96ed42 338 SUPERFAMILY SSF52540 40 285 1.13E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0755 180fde1eff4afcca38bc4e4bcc9892c8 223 ProSitePatterns PS00856 Guanylate kinase-like signature. 53 70 - T 14-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 Thimo_0755 180fde1eff4afcca38bc4e4bcc9892c8 223 SMART SM00072 18 200 3.0E-67 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Thimo_0755 180fde1eff4afcca38bc4e4bcc9892c8 223 Pfam PF00625 Guanylate kinase 21 196 8.2E-51 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Thimo_0755 180fde1eff4afcca38bc4e4bcc9892c8 223 Gene3D G3DSA:3.30.63.10 50 109 2.4E-66 T 14-10-2018 Thimo_0755 180fde1eff4afcca38bc4e4bcc9892c8 223 Gene3D G3DSA:3.40.50.300 23 195 2.4E-66 T 14-10-2018 Thimo_0755 180fde1eff4afcca38bc4e4bcc9892c8 223 SUPERFAMILY SSF52540 18 202 2.53E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0755 180fde1eff4afcca38bc4e4bcc9892c8 223 Hamap MF_00328 Guanylate kinase [gmk]. 17 200 36.105 T 14-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Thimo_0755 180fde1eff4afcca38bc4e4bcc9892c8 223 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 20 197 3.1E-70 T 14-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Thimo_2394 bec06872cad09c135c896421e050de41 616 SUPERFAMILY SSF54211 198 335 1.29E-34 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2394 bec06872cad09c135c896421e050de41 616 Pfam PF08676 MutL C terminal dimerisation domain 425 572 4.2E-46 T 14-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Thimo_2394 bec06872cad09c135c896421e050de41 616 Gene3D G3DSA:3.30.565.10 6 221 3.4E-67 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2394 bec06872cad09c135c896421e050de41 616 SUPERFAMILY SSF55874 5 205 3.01E-54 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2394 bec06872cad09c135c896421e050de41 616 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 7 315 3.4E-95 T 14-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 Thimo_2394 bec06872cad09c135c896421e050de41 616 Gene3D G3DSA:2.30.42.20 431 609 1.2E-56 T 14-10-2018 Thimo_2394 bec06872cad09c135c896421e050de41 616 Gene3D G3DSA:3.30.230.10 222 333 2.7E-35 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2394 bec06872cad09c135c896421e050de41 616 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 130 1.7E-9 T 14-10-2018 Thimo_2394 bec06872cad09c135c896421e050de41 616 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 218 334 3.8E-36 T 14-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Thimo_2394 bec06872cad09c135c896421e050de41 616 SUPERFAMILY SSF118116 425 614 7.72E-58 T 14-10-2018 IPR037198 MutL, C-terminal domain superfamily Thimo_2394 bec06872cad09c135c896421e050de41 616 SMART SM01340 217 335 9.6E-53 T 14-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Thimo_2394 bec06872cad09c135c896421e050de41 616 Gene3D G3DSA:3.30.1370.100 472 567 1.2E-56 T 14-10-2018 Thimo_2394 bec06872cad09c135c896421e050de41 616 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 6 612 28.274 T 14-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 Thimo_2394 bec06872cad09c135c896421e050de41 616 SMART SM00853 429 572 1.1E-48 T 14-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Thimo_2394 bec06872cad09c135c896421e050de41 616 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 98 104 - T 14-10-2018 IPR014762 DNA mismatch repair, conserved site Thimo_2252 cad917691299988ae2bed2d5dca1438f 303 Gene3D G3DSA:3.30.420.10 123 276 9.9E-13 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2252 cad917691299988ae2bed2d5dca1438f 303 Pfam PF13276 HTH-like domain 47 103 4.6E-15 T 14-10-2018 IPR025948 HTH-like domain Thimo_2252 cad917691299988ae2bed2d5dca1438f 303 SUPERFAMILY SSF53098 122 286 6.53E-38 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2252 cad917691299988ae2bed2d5dca1438f 303 Pfam PF00665 Integrase core domain 128 244 5.6E-29 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_2026 1d2ac48a3f5d27f547d5b4fb2021311a 475 Gene3D G3DSA:1.10.10.10 2 71 5.5E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2026 1d2ac48a3f5d27f547d5b4fb2021311a 475 Gene3D G3DSA:3.90.1150.10 99 467 2.2E-95 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2026 1d2ac48a3f5d27f547d5b4fb2021311a 475 SMART SM00345 9 68 1.8E-16 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Thimo_2026 1d2ac48a3f5d27f547d5b4fb2021311a 475 SUPERFAMILY SSF53383 100 467 6.33E-86 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2026 1d2ac48a3f5d27f547d5b4fb2021311a 475 Gene3D G3DSA:3.40.640.10 144 362 2.2E-95 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2026 1d2ac48a3f5d27f547d5b4fb2021311a 475 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 8.4E-15 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Thimo_2026 1d2ac48a3f5d27f547d5b4fb2021311a 475 Pfam PF00155 Aminotransferase class I and II 141 450 1.4E-26 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Thimo_2026 1d2ac48a3f5d27f547d5b4fb2021311a 475 SUPERFAMILY SSF46785 5 76 5.58E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2915 367f44c43534e73c8feaee0c28539724 731 Gene3D G3DSA:3.30.1840.10 26 334 4.8E-97 T 14-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 SUPERFAMILY SSF56024 522 701 3.81E-64 T 14-10-2018 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 Gene3D G3DSA:3.30.870.10 526 705 5.5E-62 T 14-10-2018 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 Hamap MF_00347 Polyphosphate kinase [ppk]. 28 703 26.112 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 PIRSF PIRSF015589 11 716 1.1E-268 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 SUPERFAMILY SSF56024 345 517 1.16E-49 T 14-10-2018 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 Pfam PF13089 Polyphosphate kinase N-terminal domain 31 136 3.5E-37 T 14-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 SUPERFAMILY SSF140356 27 130 6.15E-37 T 14-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 Pfam PF02503 Polyphosphate kinase middle domain 149 342 6.6E-55 T 14-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 31 698 3.1E-234 T 14-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 Pfam PF13090 Polyphosphate kinase C-terminal domain 352 697 1.4E-142 T 14-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 SUPERFAMILY SSF143724 133 334 1.31E-54 T 14-10-2018 Thimo_2915 367f44c43534e73c8feaee0c28539724 731 Gene3D G3DSA:3.30.870.10 340 523 2.4E-65 T 14-10-2018 Thimo_2775 894f6331de000481d1da1e10ce9523ea 162 SUPERFAMILY SSF55718 37 139 4.41E-16 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Thimo_2775 894f6331de000481d1da1e10ce9523ea 162 Pfam PF02036 SCP-2 sterol transfer family 45 134 4.2E-11 T 14-10-2018 IPR003033 SCP2 sterol-binding domain Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:3.30.65.10 580 632 1.6E-7 T 14-10-2018 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:3.30.65.10 633 683 1.3E-7 T 14-10-2018 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 SUPERFAMILY SSF56712 1 606 1.22E-193 T 14-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 686 724 3.5E-13 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 644 680 5.9E-16 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 594 628 4.8E-14 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 3 627 2.9E-246 T 14-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:1.10.460.10 137 567 1.9E-175 T 14-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 SMART SM00436 106 194 2.9E-50 T 14-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01751 Toprim domain 3 115 9.3E-28 T 14-10-2018 IPR006171 TOPRIM domain Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:1.10.290.10 263 398 1.9E-175 T 14-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 SMART SM00437 255 527 5.8E-122 T 14-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Pfam PF01131 DNA topoisomerase 133 563 7.5E-133 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 75 88 2.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 383 399 2.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 164 182 2.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 490 504 2.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 305 314 2.8E-37 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:3.40.50.140 1 136 1.7E-48 T 14-10-2018 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 292 314 - T 14-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Gene3D G3DSA:2.70.20.10 186 474 1.9E-175 T 14-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 711 55.556 T 14-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 SMART SM00493 1 101 6.0E-32 T 14-10-2018 IPR006171 TOPRIM domain Thimo_1256 124caea3429b924ec34f183dd85cab8c 794 SUPERFAMILY SSF57783 639 681 5.61E-12 T 14-10-2018 Thimo_0236 37ba9888f3ea706489c4049091fe8e0a 431 Gene3D G3DSA:3.40.50.261 242 390 6.0E-27 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0236 37ba9888f3ea706489c4049091fe8e0a 431 Gene3D G3DSA:3.30.470.20 10 221 9.2E-23 T 14-10-2018 Thimo_0236 37ba9888f3ea706489c4049091fe8e0a 431 Pfam PF08442 ATP-grasp domain 53 197 3.5E-15 T 14-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_0236 37ba9888f3ea706489c4049091fe8e0a 431 SUPERFAMILY SSF52210 249 385 7.32E-5 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0236 37ba9888f3ea706489c4049091fe8e0a 431 Pfam PF16114 ATP citrate lyase citrate-binding 247 401 9.1E-19 T 14-10-2018 IPR032263 ATP-citrate synthase, citrate-binding domain KEGG: 00020+2.3.3.8|KEGG: 00720+2.3.3.8|MetaCyc: PWY-5172|Reactome: R-HSA-163765|Reactome: R-HSA-6798695|Reactome: R-HSA-75105 Thimo_0236 37ba9888f3ea706489c4049091fe8e0a 431 Gene3D G3DSA:3.30.1490.20 22 103 9.2E-23 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_0236 37ba9888f3ea706489c4049091fe8e0a 431 SUPERFAMILY SSF56059 8 222 2.26E-28 T 14-10-2018 Thimo_0724 7d9f96be79c1f946948a9618c97f2adc 277 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 231 257 - T 14-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 Thimo_0724 7d9f96be79c1f946948a9618c97f2adc 277 Pfam PF01148 Cytidylyltransferase family 8 271 1.1E-52 T 14-10-2018 Thimo_1300 608113dbf5163f05790f0a23c9cc4e97 360 Gene3D G3DSA:3.40.640.10 17 256 1.1E-92 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_1300 608113dbf5163f05790f0a23c9cc4e97 360 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 358 7.6E-159 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Thimo_1300 608113dbf5163f05790f0a23c9cc4e97 360 SUPERFAMILY SSF53383 1 358 1.95E-122 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1300 608113dbf5163f05790f0a23c9cc4e97 360 PIRSF PIRSF000525 1 360 4.2E-157 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Thimo_1300 608113dbf5163f05790f0a23c9cc4e97 360 Pfam PF00266 Aminotransferase class-V 5 348 1.3E-57 T 14-10-2018 IPR000192 Aminotransferase class V domain Thimo_1300 608113dbf5163f05790f0a23c9cc4e97 360 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 206 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_1300 608113dbf5163f05790f0a23c9cc4e97 360 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 359 52.487 T 14-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Thimo_1300 608113dbf5163f05790f0a23c9cc4e97 360 Gene3D G3DSA:3.90.1150.10 257 360 1.1E-42 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_0077 6e8cd3a0f6b3f86a791feae8b84453e0 361 Gene3D G3DSA:3.40.190.170 34 339 3.1E-129 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Thimo_0077 6e8cd3a0f6b3f86a791feae8b84453e0 361 PIRSF PIRSF039026 1 360 1.8E-135 T 14-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like Thimo_0077 6e8cd3a0f6b3f86a791feae8b84453e0 361 Gene3D G3DSA:3.40.190.10 154 325 3.1E-129 T 14-10-2018 Thimo_0077 6e8cd3a0f6b3f86a791feae8b84453e0 361 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 325 5.5E-57 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Thimo_0077 6e8cd3a0f6b3f86a791feae8b84453e0 361 SUPERFAMILY SSF53850 152 274 6.15E-6 T 14-10-2018 Thimo_1415 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 Gene3D G3DSA:3.40.50.2000 206 368 6.8E-49 T 14-10-2018 Thimo_1415 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 Pfam PF13439 Glycosyltransferase Family 4 47 206 4.8E-9 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1415 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 SUPERFAMILY SSF53756 36 394 2.47E-59 T 14-10-2018 Thimo_1415 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 Pfam PF00534 Glycosyl transferases group 1 226 374 4.2E-34 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1415 22cedcc8cdd7bd0c3ec8a767b1773dbb 412 Gene3D G3DSA:3.40.50.2000 48 205 6.8E-49 T 14-10-2018 Thimo_1205 c0a8f1dd1d2ce5f8421dab5defd4062f 210 Pfam PF01583 Adenylylsulphate kinase 24 177 2.2E-74 T 14-10-2018 Thimo_1205 c0a8f1dd1d2ce5f8421dab5defd4062f 210 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 23 195 39.228 T 14-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Thimo_1205 c0a8f1dd1d2ce5f8421dab5defd4062f 210 SUPERFAMILY SSF52540 21 194 4.13E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1205 c0a8f1dd1d2ce5f8421dab5defd4062f 210 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 7 191 1.2E-82 T 14-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Thimo_1205 c0a8f1dd1d2ce5f8421dab5defd4062f 210 Gene3D G3DSA:3.40.50.300 1 201 1.8E-83 T 14-10-2018 Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 Gene3D G3DSA:3.30.1330.60 73 222 8.6E-41 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 ProSitePatterns PS01068 OmpA-like domain. 149 193 - T 14-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 Pfam PF00691 OmpA family 117 211 1.5E-21 T 14-10-2018 IPR006665 OmpA-like domain Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 SUPERFAMILY SSF103088 105 220 2.35E-36 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 180 199 6.9E-7 T 14-10-2018 Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 162 179 6.9E-7 T 14-10-2018 Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 200 220 6.9E-7 T 14-10-2018 Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 PRINTS PR01021 OMPA domain signature 162 178 4.9E-13 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 PRINTS PR01021 OMPA domain signature 117 139 4.9E-13 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 PRINTS PR01021 OMPA domain signature 147 162 4.9E-13 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_2819 48b466bdffa9ca0b1ca95aaab0911d7c 223 Pfam PF13488 Glycine zipper 36 81 1.2E-10 T 14-10-2018 IPR039567 Glycine zipper domain Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 109 1.1E-43 T 14-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 SMART SM00878 335 441 2.3E-55 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 SUPERFAMILY SSF51246 330 446 2.67E-41 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 SUPERFAMILY SSF52440 1 112 4.89E-46 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 321 2.0E-77 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 SUPERFAMILY SSF56059 82 347 8.13E-69 T 14-10-2018 Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 Gene3D G3DSA:3.30.470.130 1 448 1.9E-190 T 14-10-2018 Thimo_1967 77efcf65eaa693a5c7184dc1f7a2957e 473 Pfam PF02785 Biotin carboxylase C-terminal domain 335 441 7.8E-38 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Thimo_1048 dadaba3520e7c7f91d2fc3c31e229604 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 164 4.0E-24 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Thimo_1048 dadaba3520e7c7f91d2fc3c31e229604 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 226 4.0E-24 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Thimo_1048 dadaba3520e7c7f91d2fc3c31e229604 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 227 242 4.0E-24 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Thimo_1048 dadaba3520e7c7f91d2fc3c31e229604 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 204 214 4.0E-24 T 14-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Thimo_1048 dadaba3520e7c7f91d2fc3c31e229604 292 Pfam PF01478 Type IV leader peptidase family 138 247 4.8E-23 T 14-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Thimo_1048 dadaba3520e7c7f91d2fc3c31e229604 292 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 20 128 8.0E-34 T 14-10-2018 IPR010627 Peptidase A24A, N-terminal Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 SMART SM00382 31 236 2.2E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 SMART SM00382 348 526 5.2E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 SUPERFAMILY SSF52540 300 530 1.14E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 6.0E-303 T 14-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 Pfam PF12848 ABC transporter 230 303 4.1E-11 T 14-10-2018 IPR032781 ABC-transporter extension domain Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 SUPERFAMILY SSF52540 12 244 3.65E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 Pfam PF00005 ABC transporter 22 191 8.6E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 Gene3D G3DSA:3.40.50.300 1 285 2.7E-82 T 14-10-2018 Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 Gene3D G3DSA:3.40.50.300 286 555 4.6E-73 T 14-10-2018 Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 Pfam PF00005 ABC transporter 340 473 2.2E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2007 9ebb148b932f2889ac88913808a23f15 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.9E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 Gene3D G3DSA:3.40.190.10 87 180 2.5E-15 T 14-10-2018 Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.3E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.3E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.3E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 Gene3D G3DSA:1.10.10.10 1 86 2.3E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 SUPERFAMILY SSF46785 1 110 2.99E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 Pfam PF03466 LysR substrate binding domain 88 275 1.3E-16 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_3364 24e1a5535366a5273e0fa36fb1185a32 288 SUPERFAMILY SSF53850 89 279 2.48E-20 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1376 18.928 T 14-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:1.10.40.90 374 416 6.5E-22 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:2.40.50.100 1023 1126 2.4E-29 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1314 3.2E-77 T 14-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1366 0.0 T 14-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 485 1.9E-34 T 14-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 SUPERFAMILY SSF64484 16 1366 0.0 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 5.4E-27 T 14-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 SMART SM00663 235 514 2.3E-182 T 14-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:1.10.132.30 641 790 9.0E-66 T 14-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 342 2.3E-87 T 14-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:2.40.50.100 1151 1214 3.7E-65 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:2.40.50.100 948 1022 7.6E-27 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:1.10.1790.20 1135 1313 3.7E-65 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:1.10.150.390 1315 1376 3.3E-27 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Gene3D G3DSA:1.10.274.100 490 640 9.2E-40 T 14-10-2018 Thimo_2866 38e4efae991e4e4e8fd7c1f052ba50fa 1406 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 4.0E-19 T 14-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_1296 7f782186fbde478a697275ee5d5d235a 462 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 101 115 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Thimo_1296 7f782186fbde478a697275ee5d5d235a 462 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 103 395 6.1E-18 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_1296 7f782186fbde478a697275ee5d5d235a 462 Gene3D G3DSA:3.90.1380.10 1 86 1.9E-26 T 14-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily Thimo_1296 7f782186fbde478a697275ee5d5d235a 462 Gene3D G3DSA:3.40.50.1100 107 439 4.5E-149 T 14-10-2018 Thimo_1296 7f782186fbde478a697275ee5d5d235a 462 SUPERFAMILY SSF53686 1 456 1.7E-158 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_1296 7f782186fbde478a697275ee5d5d235a 462 Pfam PF14821 Threonine synthase N terminus 3 80 5.2E-26 T 14-10-2018 IPR029144 Threonine synthase, N-terminal Thimo_1296 7f782186fbde478a697275ee5d5d235a 462 Gene3D G3DSA:3.40.50.1100 97 426 4.5E-149 T 14-10-2018 Thimo_1296 7f782186fbde478a697275ee5d5d235a 462 TIGRFAM TIGR00260 thrC: threonine synthase 69 419 6.9E-87 T 14-10-2018 IPR004450 Threonine synthase-like Thimo_0923 b7fb7937a89eac9ce880f89725d76254 325 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 303 6.1E-66 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_0923 b7fb7937a89eac9ce880f89725d76254 325 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 314 3.6E-135 T 14-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Thimo_0923 b7fb7937a89eac9ce880f89725d76254 325 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 14-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Thimo_0923 b7fb7937a89eac9ce880f89725d76254 325 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 314 2.0E-129 T 14-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Thimo_0923 b7fb7937a89eac9ce880f89725d76254 325 Gene3D G3DSA:3.40.50.1100 46 148 3.1E-120 T 14-10-2018 Thimo_0923 b7fb7937a89eac9ce880f89725d76254 325 Gene3D G3DSA:3.40.50.1100 12 309 3.1E-120 T 14-10-2018 Thimo_0923 b7fb7937a89eac9ce880f89725d76254 325 SUPERFAMILY SSF53686 4 314 7.99E-95 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_3585 13dbeee4a6ffdd3a240d26ca06ac56f5 172 Pfam PF07484 Phage Tail Collar Domain 7 63 1.4E-24 T 14-10-2018 IPR011083 Phage tail collar domain Thimo_3585 13dbeee4a6ffdd3a240d26ca06ac56f5 172 Gene3D G3DSA:3.90.1340.10 2 59 7.3E-16 T 14-10-2018 IPR037053 Phage tail collar domain superfamily Thimo_3585 13dbeee4a6ffdd3a240d26ca06ac56f5 172 SUPERFAMILY SSF88874 1 166 1.7E-45 T 14-10-2018 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 SUPERFAMILY SSF55347 176 485 5.89E-109 T 14-10-2018 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 Gene3D G3DSA:3.40.50.720 7 434 5.8E-167 T 14-10-2018 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 218 235 6.2E-45 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 327 353 6.2E-45 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 155 6.2E-45 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 194 6.2E-45 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 236 252 6.2E-45 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 8 186 2.2E-55 T 14-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 4 486 77.656 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 4 486 1.1E-172 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 188 485 3.5E-110 T 14-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 PIRSF PIRSF000110 1 488 2.1E-170 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 SUPERFAMILY SSF51735 2 189 2.76E-53 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3516 b549c06af67201f27a7d20cb9799d8ca 490 Gene3D G3DSA:3.30.360.10 176 473 5.8E-167 T 14-10-2018 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 Gene3D G3DSA:3.40.50.620 8 221 7.0E-73 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 SUPERFAMILY SSF55174 324 401 8.77E-18 T 14-10-2018 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 6 402 48.843 T 14-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 SMART SM00363 341 403 5.9E-5 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 56 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 Pfam PF01479 S4 domain 342 381 2.9E-8 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 SUPERFAMILY SSF52374 9 320 9.32E-97 T 14-10-2018 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 Pfam PF00579 tRNA synthetases class I (W and Y) 36 321 2.3E-77 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 Gene3D G3DSA:1.10.240.10 222 330 3.8E-32 T 14-10-2018 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 1.3E-25 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 182 204 1.3E-25 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 215 227 1.3E-25 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 50 72 1.3E-25 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 Gene3D G3DSA:3.10.290.10 331 402 6.7E-20 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Thimo_1034 af12b29cde594f8c1d9e5c9a4cad5a42 403 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 401 7.6E-122 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Thimo_0264 bd65ed4be8005420a970497261251042 140 Gene3D G3DSA:3.30.160.170 40 136 3.5E-16 T 14-10-2018 IPR035924 FlaG-like superfamily Thimo_0264 bd65ed4be8005420a970497261251042 140 Pfam PF03646 FlaG protein 58 131 5.5E-20 T 14-10-2018 IPR005186 FlaG protein Thimo_0264 bd65ed4be8005420a970497261251042 140 SUPERFAMILY SSF160214 58 137 1.44E-19 T 14-10-2018 IPR035924 FlaG-like superfamily Thimo_2749 1ade297b8c0fe58d209f0fb325b16d5f 213 Pfam PF01634 ATP phosphoribosyltransferase 56 207 1.7E-48 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Thimo_2749 1ade297b8c0fe58d209f0fb325b16d5f 213 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 186 5.6E-58 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Thimo_2749 1ade297b8c0fe58d209f0fb325b16d5f 213 Gene3D G3DSA:3.40.190.10 98 179 1.1E-71 T 14-10-2018 Thimo_2749 1ade297b8c0fe58d209f0fb325b16d5f 213 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 6 211 53.831 T 14-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 Thimo_2749 1ade297b8c0fe58d209f0fb325b16d5f 213 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 146 167 - T 14-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 Thimo_2749 1ade297b8c0fe58d209f0fb325b16d5f 213 SUPERFAMILY SSF53850 5 211 3.69E-66 T 14-10-2018 Thimo_2749 1ade297b8c0fe58d209f0fb325b16d5f 213 Gene3D G3DSA:3.40.190.10 8 200 1.1E-71 T 14-10-2018 Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 SMART SM00244 19 176 8.0E-64 T 14-10-2018 IPR001107 Band 7 domain Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 SUPERFAMILY SSF117892 50 183 1.05E-43 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 Pfam PF01145 SPFH domain / Band 7 family 25 192 5.3E-34 T 14-10-2018 IPR001107 Band 7 domain Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 Gene3D G3DSA:3.30.479.30 47 178 7.2E-47 T 14-10-2018 Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 PRINTS PR00721 Stomatin signature 196 219 1.5E-62 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 PRINTS PR00721 Stomatin signature 152 170 1.5E-62 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 PRINTS PR00721 Stomatin signature 108 125 1.5E-62 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 PRINTS PR00721 Stomatin signature 128 151 1.5E-62 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 PRINTS PR00721 Stomatin signature 73 94 1.5E-62 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 PRINTS PR00721 Stomatin signature 171 192 1.5E-62 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_3321 7391f9ad09cc331beb70318712a92abb 257 PRINTS PR00721 Stomatin signature 26 48 1.5E-62 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_1850 adbebd939ac4e56ad243f8c19dcd99a5 91 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 3 80 22.231 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Thimo_1850 adbebd939ac4e56ad243f8c19dcd99a5 91 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 50 1.4E-20 T 14-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Thimo_1850 adbebd939ac4e56ad243f8c19dcd99a5 91 Pfam PF02416 mttA/Hcf106 family 6 57 4.1E-14 T 14-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Thimo_3002 c84f23de497aeeada01598f5e923c785 47 Gene3D G3DSA:1.20.5.250 1 47 7.2E-19 T 14-10-2018 Thimo_3002 c84f23de497aeeada01598f5e923c785 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.6E-10 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3002 c84f23de497aeeada01598f5e923c785 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3002 c84f23de497aeeada01598f5e923c785 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3002 c84f23de497aeeada01598f5e923c785 47 SUPERFAMILY SSF56918 4 47 1.75E-12 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_0739 6f86945486fd9de325781c9c5eb93f1d 417 Pfam PF02441 Flavoprotein 20 189 2.4E-46 T 14-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Thimo_0739 6f86945486fd9de325781c9c5eb93f1d 417 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 201 382 4.2E-69 T 14-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Thimo_0739 6f86945486fd9de325781c9c5eb93f1d 417 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 19 407 1.1E-136 T 14-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 Thimo_0739 6f86945486fd9de325781c9c5eb93f1d 417 SUPERFAMILY SSF52507 18 190 4.97E-62 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Thimo_0739 6f86945486fd9de325781c9c5eb93f1d 417 Gene3D G3DSA:3.40.50.10300 199 414 1.1E-76 T 14-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Thimo_0739 6f86945486fd9de325781c9c5eb93f1d 417 SUPERFAMILY SSF102645 200 411 3.79E-72 T 14-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Thimo_0739 6f86945486fd9de325781c9c5eb93f1d 417 Gene3D G3DSA:3.40.50.1950 15 194 5.2E-58 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 PIRSF PIRSF017245 2 797 0.0 T 14-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 Pfam PF09363 XFP C-terminal domain 594 795 1.3E-89 T 14-10-2018 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 406 583 2.7E-82 T 14-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 SUPERFAMILY SSF52518 14 376 2.82E-76 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 ProSitePatterns PS60002 Phosphoketolase signature 1. 151 157 - T 14-10-2018 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 Gene3D G3DSA:3.40.50.920 614 797 3.2E-72 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 Pfam PF09364 XFP N-terminal domain 15 391 5.3E-187 T 14-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 Gene3D G3DSA:3.40.50.970 2 392 1.3E-171 T 14-10-2018 Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 Gene3D G3DSA:3.40.50.970 393 613 3.4E-96 T 14-10-2018 Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 SUPERFAMILY SSF52518 383 596 8.24E-23 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1917 c8567a3e0f0334ffd7b2e8da36960b2f 797 Hamap MF_01403 Probable phosphoketolase. 12 797 39.948 T 14-10-2018 IPR023962 Probable phosphoketolase Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 SUPERFAMILY SSF52540 22 245 1.9E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 SMART SM00382 38 208 3.0 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 SMART SM00382 278 442 0.075 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 SUPERFAMILY SSF52540 259 484 8.74E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 Pfam PF06745 KaiC 22 241 3.3E-50 T 14-10-2018 IPR014774 KaiC-like domain Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 Pfam PF06745 KaiC 261 481 1.1E-34 T 14-10-2018 IPR014774 KaiC-like domain Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 Gene3D G3DSA:3.40.50.300 6 246 3.7E-47 T 14-10-2018 Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 PRINTS PR01874 DNA repair protein radA signature 270 298 2.4E-7 T 14-10-2018 Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 PRINTS PR01874 DNA repair protein radA signature 413 441 2.4E-7 T 14-10-2018 Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 PRINTS PR01874 DNA repair protein radA signature 312 329 2.4E-7 T 14-10-2018 Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 PIRSF PIRSF039117 9 515 3.4E-133 T 14-10-2018 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 Thimo_0955 ed57bf683a728d6dc962dc88eaeaf6d0 571 Gene3D G3DSA:3.40.50.300 248 500 8.2E-48 T 14-10-2018 Thimo_3739 5de52c3cc455a605ff0b918ed93ff203 252 PIRSF PIRSF009320 1 53 4.0E-13 T 14-10-2018 Thimo_3739 5de52c3cc455a605ff0b918ed93ff203 252 PIRSF PIRSF009320 91 252 1.5E-7 T 14-10-2018 Thimo_3739 5de52c3cc455a605ff0b918ed93ff203 252 Pfam PF13614 AAA domain 1 172 4.7E-30 T 14-10-2018 IPR025669 AAA domain Thimo_3739 5de52c3cc455a605ff0b918ed93ff203 252 SUPERFAMILY SSF52540 1 250 3.16E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3739 5de52c3cc455a605ff0b918ed93ff203 252 Gene3D G3DSA:3.40.50.300 1 252 3.8E-53 T 14-10-2018 Thimo_0953 7590ede3627c25193241ccc9007d4256 673 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 105 228 1.1E-17 T 14-10-2018 IPR000014 PAS domain Thimo_0953 7590ede3627c25193241ccc9007d4256 673 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 8 64 1.0E-7 T 14-10-2018 IPR000014 PAS domain Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SMART SM00086 60 100 440.0 T 14-10-2018 IPR001610 PAC motif Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SMART SM00086 180 222 2.1E-5 T 14-10-2018 IPR001610 PAC motif Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SUPERFAMILY SSF141868 411 659 8.5E-89 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0953 7590ede3627c25193241ccc9007d4256 673 Gene3D G3DSA:3.30.450.20 7 110 1.7E-11 T 14-10-2018 Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SUPERFAMILY SSF55073 238 395 3.45E-44 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_0953 7590ede3627c25193241ccc9007d4256 673 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 229 392 6.6E-38 T 14-10-2018 IPR000160 GGDEF domain Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SUPERFAMILY SSF55785 17 108 7.07E-15 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SMART SM00052 405 651 1.6E-113 T 14-10-2018 IPR001633 EAL domain Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SMART SM00091 6 72 6.7E-8 T 14-10-2018 IPR000014 PAS domain Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SMART SM00091 108 175 0.027 T 14-10-2018 IPR000014 PAS domain Thimo_0953 7590ede3627c25193241ccc9007d4256 673 Pfam PF00563 EAL domain 411 646 9.5E-73 T 14-10-2018 IPR001633 EAL domain Thimo_0953 7590ede3627c25193241ccc9007d4256 673 Pfam PF00989 PAS fold 7 57 1.0E-8 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_0953 7590ede3627c25193241ccc9007d4256 673 Pfam PF00989 PAS fold 112 219 1.0E-10 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SMART SM00267 222 395 4.2E-62 T 14-10-2018 IPR000160 GGDEF domain Thimo_0953 7590ede3627c25193241ccc9007d4256 673 Gene3D G3DSA:3.30.450.20 111 231 6.0E-32 T 14-10-2018 Thimo_0953 7590ede3627c25193241ccc9007d4256 673 SUPERFAMILY SSF55785 116 219 1.03E-26 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0953 7590ede3627c25193241ccc9007d4256 673 Gene3D G3DSA:3.30.70.270 232 407 7.1E-55 T 14-10-2018 Thimo_0953 7590ede3627c25193241ccc9007d4256 673 PIRSF PIRSF005925 97 228 1.1E-10 T 14-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase Thimo_0953 7590ede3627c25193241ccc9007d4256 673 PIRSF PIRSF005925 222 665 4.5E-137 T 14-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase Thimo_0953 7590ede3627c25193241ccc9007d4256 673 PIRSF PIRSF005925 8 92 2.0E-4 T 14-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase Thimo_0953 7590ede3627c25193241ccc9007d4256 673 Gene3D G3DSA:3.20.20.450 408 659 2.4E-100 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0953 7590ede3627c25193241ccc9007d4256 673 Pfam PF00990 Diguanylate cyclase, GGDEF domain 233 390 7.0E-45 T 14-10-2018 IPR000160 GGDEF domain Thimo_2073 71deef27dacce3ad6116d2405c991ee7 185 SUPERFAMILY SSF53271 16 183 3.28E-45 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_2073 71deef27dacce3ad6116d2405c991ee7 185 Gene3D G3DSA:3.40.50.2020 3 185 2.9E-51 T 14-10-2018 Thimo_2073 71deef27dacce3ad6116d2405c991ee7 185 Pfam PF00156 Phosphoribosyl transferase domain 20 145 3.9E-22 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Thimo_2511 1b29d066818810bda9236e34102f8473 246 SMART SM00382 26 218 2.5E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2511 1b29d066818810bda9236e34102f8473 246 Gene3D G3DSA:3.40.50.300 1 243 1.5E-56 T 14-10-2018 Thimo_2511 1b29d066818810bda9236e34102f8473 246 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2511 1b29d066818810bda9236e34102f8473 246 SUPERFAMILY SSF52540 2 219 1.38E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2511 1b29d066818810bda9236e34102f8473 246 Pfam PF00005 ABC transporter 17 171 2.6E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_3014 f7b317841d2a095895e2f6cb5663d90a 596 SUPERFAMILY SSF53300 414 527 5.93E-20 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_3014 f7b317841d2a095895e2f6cb5663d90a 596 Gene3D G3DSA:1.10.8.80 192 273 6.3E-10 T 14-10-2018 Thimo_3014 f7b317841d2a095895e2f6cb5663d90a 596 SMART SM00327 412 588 3.3E-17 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_3014 f7b317841d2a095895e2f6cb5663d90a 596 Pfam PF13519 von Willebrand factor type A domain 415 518 1.5E-13 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_3014 f7b317841d2a095895e2f6cb5663d90a 596 SUPERFAMILY SSF52540 44 266 9.11E-17 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3014 f7b317841d2a095895e2f6cb5663d90a 596 Gene3D G3DSA:3.40.50.300 29 169 1.1E-16 T 14-10-2018 Thimo_3014 f7b317841d2a095895e2f6cb5663d90a 596 TIGRFAM TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D 14 586 6.9E-155 T 14-10-2018 IPR011776 Magnesium chelatase, ATPase subunit D GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3014 f7b317841d2a095895e2f6cb5663d90a 596 Gene3D G3DSA:3.40.50.410 411 578 2.5E-17 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF81767 259 399 1.96E-42 T 14-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 191 845 6.4E-270 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:3.10.450.50 887 939 6.6E-9 T 14-10-2018 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF52540 447 647 1.73E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF52540 5 446 1.82E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 ProSitePatterns PS01312 SecA family signature. 531 546 - T 14-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:3.40.50.300 448 649 9.0E-87 T 14-10-2018 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:1.10.3060.10 650 862 1.4E-76 T 14-10-2018 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 861 19.984 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:3.90.1440.10 257 399 1.1E-169 T 14-10-2018 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Pfam PF02810 SEC-C motif 920 938 4.5E-10 T 14-10-2018 IPR004027 SEC-C motif Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Pfam PF07517 SecA DEAD-like domain 7 433 2.9E-128 T 14-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Gene3D G3DSA:3.40.50.300 23 446 1.1E-169 T 14-10-2018 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 SMART SM00957 6 433 4.5E-296 T 14-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 SMART SM00958 256 389 4.0E-78 T 14-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 370 392 4.7E-58 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 63 87 4.7E-58 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 101 115 4.7E-58 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 444 457 4.7E-58 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 407 424 4.7E-58 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 PRINTS PR00906 SecA protein signature 117 127 4.7E-58 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 SUPERFAMILY SSF81886 649 928 3.92E-81 T 14-10-2018 IPR036266 SecA, Wing/Scaffold superfamily Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Pfam PF07516 SecA Wing and Scaffold domain 646 858 1.1E-66 T 14-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Thimo_3665 959dbb438f44a57b4bc05edfcf50cc0e 940 Pfam PF01043 SecA preprotein cross-linking domain 260 389 7.9E-38 T 14-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00091 1197 1266 2.8 T 14-10-2018 IPR000014 PAS domain Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00091 782 847 5.9 T 14-10-2018 IPR000014 PAS domain Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00091 1072 1138 8.5E-5 T 14-10-2018 IPR000014 PAS domain Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF52172 1595 1716 2.56E-35 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00387 1451 1564 1.5E-36 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF52738 58 242 8.11E-53 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF47384 1324 1405 1.39E-22 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF08448 PAS fold 1079 1186 3.7E-16 T 14-10-2018 IPR013656 PAS fold-4 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00388 1339 1404 5.8E-24 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55785 776 889 2.27E-7 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:2.10.70.100 1273 1317 2.8E-10 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF03705 CheR methyltransferase, all-alpha domain 260 311 1.2E-12 T 14-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.450.20 1061 1194 3.8E-19 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.450.20 769 902 1.9E-13 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00448 1595 1711 9.8E-38 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00448 1729 1840 1.1E-18 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00086 849 891 290.0 T 14-10-2018 IPR001610 PAC motif Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00086 1274 1319 0.0088 T 14-10-2018 IPR001610 PAC motif Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00086 1144 1185 85.0 T 14-10-2018 IPR001610 PAC motif Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF47757 256 326 4.71E-13 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF13596 PAS domain 784 889 2.1E-22 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.450.20 1195 1265 2.4E-13 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00065 920 1068 3.7E-8 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.40.50.2300 1729 1847 2.6E-22 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF52172 1730 1843 2.85E-25 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.565.10 1403 1563 1.3E-47 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF01590 GAF domain 922 1056 5.8E-7 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55781 922 1060 1.02E-16 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF00072 Response regulator receiver domain 1597 1711 1.9E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF00072 Response regulator receiver domain 1731 1840 3.2E-16 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55785 1060 1183 2.39E-19 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF53335 324 516 2.82E-45 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55874 1393 1562 1.57E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1069 1192 4.6E-13 T 14-10-2018 IPR000014 PAS domain Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1194 1326 4.5E-12 T 14-10-2018 IPR000014 PAS domain Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.40.50.12740 1593 1728 7.6E-39 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF01739 CheR methyltransferase, SAM binding domain 325 512 2.3E-49 T 14-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF01339 CheB methylesterase 61 236 8.4E-54 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SUPERFAMILY SSF55785 1182 1317 1.42E-18 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1339 1404 1.1E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 477 500 1.9E-22 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 458 472 1.9E-22 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 317 329 1.9E-22 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 356 376 1.9E-22 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 PRINTS PR00996 Glutamate methyltransferase family signature 392 408 1.9E-22 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:1.10.287.130 1318 1402 3.4E-27 T 14-10-2018 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1452 1562 1.8E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 SMART SM00138 258 518 2.0E-79 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.30.450.40 903 1060 8.1E-19 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.40.50.180 54 245 1.8E-63 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Pfam PF08447 PAS fold 1219 1301 1.5E-10 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 Thimo_1570 973f97df7fe7177b396781e3d098c53f 1849 Gene3D G3DSA:3.40.50.150 323 520 4.2E-58 T 14-10-2018 Thimo_1484 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF53098 223 329 8.35E-10 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1484 779fe8215fef63cbe68c5bb44778d13f 341 Gene3D G3DSA:3.30.420.470 134 332 5.0E-19 T 14-10-2018 Thimo_1484 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13592 Winged helix-turn helix 100 156 2.2E-20 T 14-10-2018 IPR025959 Winged helix-turn helix domain Thimo_1484 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13358 DDE superfamily endonuclease 169 311 1.3E-30 T 14-10-2018 IPR038717 Tc1-like transposase, DDE domain Thimo_1484 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13551 Winged helix-turn helix 29 87 1.2E-8 T 14-10-2018 Thimo_1484 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF46689 13 131 4.18E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2622 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF53098 223 329 8.35E-10 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2622 779fe8215fef63cbe68c5bb44778d13f 341 Gene3D G3DSA:3.30.420.470 134 332 5.0E-19 T 14-10-2018 Thimo_2622 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13592 Winged helix-turn helix 100 156 2.2E-20 T 14-10-2018 IPR025959 Winged helix-turn helix domain Thimo_2622 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13358 DDE superfamily endonuclease 169 311 1.3E-30 T 14-10-2018 IPR038717 Tc1-like transposase, DDE domain Thimo_2622 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13551 Winged helix-turn helix 29 87 1.2E-8 T 14-10-2018 Thimo_2622 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF46689 13 131 4.18E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3352 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF53098 223 329 8.35E-10 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_3352 779fe8215fef63cbe68c5bb44778d13f 341 Gene3D G3DSA:3.30.420.470 134 332 5.0E-19 T 14-10-2018 Thimo_3352 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13592 Winged helix-turn helix 100 156 2.2E-20 T 14-10-2018 IPR025959 Winged helix-turn helix domain Thimo_3352 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13358 DDE superfamily endonuclease 169 311 1.3E-30 T 14-10-2018 IPR038717 Tc1-like transposase, DDE domain Thimo_3352 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13551 Winged helix-turn helix 29 87 1.2E-8 T 14-10-2018 Thimo_3352 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF46689 13 131 4.18E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2151 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF53098 223 329 8.35E-10 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2151 779fe8215fef63cbe68c5bb44778d13f 341 Gene3D G3DSA:3.30.420.470 134 332 5.0E-19 T 14-10-2018 Thimo_2151 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13592 Winged helix-turn helix 100 156 2.2E-20 T 14-10-2018 IPR025959 Winged helix-turn helix domain Thimo_2151 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13358 DDE superfamily endonuclease 169 311 1.3E-30 T 14-10-2018 IPR038717 Tc1-like transposase, DDE domain Thimo_2151 779fe8215fef63cbe68c5bb44778d13f 341 Pfam PF13551 Winged helix-turn helix 29 87 1.2E-8 T 14-10-2018 Thimo_2151 779fe8215fef63cbe68c5bb44778d13f 341 SUPERFAMILY SSF46689 13 131 4.18E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3019 6eb0a3c98b5552465636e9548c278bad 258 SUPERFAMILY SSF81490 10 44 5.1E-10 T 14-10-2018 Thimo_3019 6eb0a3c98b5552465636e9548c278bad 258 Gene3D G3DSA:4.10.540.10 4 115 2.3E-34 T 14-10-2018 IPR037097 Photosynthetic reaction centre, H subunit, N-terminal domain superfamily GO:0019684|GO:0030077|GO:0045156 Thimo_3019 6eb0a3c98b5552465636e9548c278bad 258 Pfam PF03967 Photosynthetic reaction centre, H-chain N-terminal region 6 135 1.8E-48 T 14-10-2018 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 Thimo_3019 6eb0a3c98b5552465636e9548c278bad 258 TIGRFAM TIGR01150 puhA: photosynthetic reaction center H subunit 4 252 1.2E-80 T 14-10-2018 IPR005652 Photosynthetic reaction centre, H subunit GO:0019684|GO:0030077|GO:0045156 Thimo_3019 6eb0a3c98b5552465636e9548c278bad 258 Gene3D G3DSA:3.90.50.10 116 258 1.3E-53 T 14-10-2018 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 Thimo_3019 6eb0a3c98b5552465636e9548c278bad 258 SUPERFAMILY SSF50346 37 253 2.92E-71 T 14-10-2018 IPR011033 PRC-barrel-like superfamily Thimo_3019 6eb0a3c98b5552465636e9548c278bad 258 Pfam PF05239 PRC-barrel domain 145 200 1.2E-11 T 14-10-2018 IPR027275 PRC-barrel domain Thimo_2774 6eb0a3c98b5552465636e9548c278bad 258 SUPERFAMILY SSF81490 10 44 5.1E-10 T 14-10-2018 Thimo_2774 6eb0a3c98b5552465636e9548c278bad 258 Gene3D G3DSA:4.10.540.10 4 115 2.3E-34 T 14-10-2018 IPR037097 Photosynthetic reaction centre, H subunit, N-terminal domain superfamily GO:0019684|GO:0030077|GO:0045156 Thimo_2774 6eb0a3c98b5552465636e9548c278bad 258 Pfam PF03967 Photosynthetic reaction centre, H-chain N-terminal region 6 135 1.8E-48 T 14-10-2018 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 Thimo_2774 6eb0a3c98b5552465636e9548c278bad 258 TIGRFAM TIGR01150 puhA: photosynthetic reaction center H subunit 4 252 1.2E-80 T 14-10-2018 IPR005652 Photosynthetic reaction centre, H subunit GO:0019684|GO:0030077|GO:0045156 Thimo_2774 6eb0a3c98b5552465636e9548c278bad 258 Gene3D G3DSA:3.90.50.10 116 258 1.3E-53 T 14-10-2018 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 Thimo_2774 6eb0a3c98b5552465636e9548c278bad 258 SUPERFAMILY SSF50346 37 253 2.92E-71 T 14-10-2018 IPR011033 PRC-barrel-like superfamily Thimo_2774 6eb0a3c98b5552465636e9548c278bad 258 Pfam PF05239 PRC-barrel domain 145 200 1.2E-11 T 14-10-2018 IPR027275 PRC-barrel domain Thimo_1899 bcf2475759713a38e0267782cbd33f13 247 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 2 247 31.729 T 14-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 Thimo_1899 bcf2475759713a38e0267782cbd33f13 247 SUPERFAMILY SSF53167 3 243 1.36E-69 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Thimo_1899 bcf2475759713a38e0267782cbd33f13 247 Gene3D G3DSA:3.40.50.1580 2 243 1.8E-70 T 14-10-2018 Thimo_1899 bcf2475759713a38e0267782cbd33f13 247 Pfam PF01048 Phosphorylase superfamily 3 242 1.7E-39 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Thimo_1307 ea6e4ecd1cff014e23fa5f749d6c2814 92 SUPERFAMILY SSF46689 5 50 2.15E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_1307 ea6e4ecd1cff014e23fa5f749d6c2814 92 Pfam PF01527 Transposase 4 57 5.9E-12 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_1307 ea6e4ecd1cff014e23fa5f749d6c2814 92 Gene3D G3DSA:1.10.10.60 10 78 1.2E-7 T 14-10-2018 Thimo_1307 ea6e4ecd1cff014e23fa5f749d6c2814 92 Pfam PF13683 Integrase core domain 37 83 1.2E-7 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_1235 614fa2d513457247f086a48d0beee22e 460 Pfam PF10415 Fumarase C C-terminus 383 435 2.3E-15 T 14-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_1235 614fa2d513457247f086a48d0beee22e 460 Gene3D G3DSA:1.10.40.30 383 443 7.4E-17 T 14-10-2018 Thimo_1235 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00145 Argininosuccinate lyase family signature 292 308 5.5E-7 T 14-10-2018 Thimo_1235 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00145 Argininosuccinate lyase family signature 150 170 5.5E-7 T 14-10-2018 Thimo_1235 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00145 Argininosuccinate lyase family signature 109 131 5.5E-7 T 14-10-2018 Thimo_1235 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00149 Fumarate lyase superfamily signature 292 308 9.7E-33 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1235 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00149 Fumarate lyase superfamily signature 155 173 9.7E-33 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1235 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00149 Fumarate lyase superfamily signature 110 128 9.7E-33 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1235 614fa2d513457247f086a48d0beee22e 460 PRINTS PR00149 Fumarate lyase superfamily signature 246 273 9.7E-33 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1235 614fa2d513457247f086a48d0beee22e 460 Pfam PF00206 Lyase 2 317 1.3E-87 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal Thimo_1235 614fa2d513457247f086a48d0beee22e 460 Gene3D G3DSA:1.10.275.10 1 114 7.0E-41 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal Thimo_1235 614fa2d513457247f086a48d0beee22e 460 Gene3D G3DSA:1.20.200.10 115 381 2.5E-92 T 14-10-2018 Thimo_1235 614fa2d513457247f086a48d0beee22e 460 ProSitePatterns PS00163 Fumarate lyases signature. 292 301 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Thimo_1235 614fa2d513457247f086a48d0beee22e 460 SUPERFAMILY SSF48557 3 437 3.3E-123 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 Thimo_2855 8d4036c231c9c84a2852c8ff4ca3df0c 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 14-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2855 8d4036c231c9c84a2852c8ff4ca3df0c 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 2.1E-34 T 14-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Thimo_2855 8d4036c231c9c84a2852c8ff4ca3df0c 110 Gene3D G3DSA:3.90.470.10 1 110 6.2E-42 T 14-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_2855 8d4036c231c9c84a2852c8ff4ca3df0c 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.7E-43 T 14-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2855 8d4036c231c9c84a2852c8ff4ca3df0c 110 SUPERFAMILY SSF54843 1 109 4.32E-39 T 14-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_2855 8d4036c231c9c84a2852c8ff4ca3df0c 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 26.717 T 14-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 Gene3D G3DSA:3.40.190.10 246 328 2.9E-14 T 14-10-2018 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 Pfam PF07885 Ion channel 167 245 6.1E-12 T 14-10-2018 IPR013099 Potassium channel domain Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 371 2.2E-47 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 Pfam PF00060 Ligand-gated ion channel 162 263 4.1E-17 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 PRINTS PR00169 Potassium channel signature 218 244 3.2E-6 T 14-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 PRINTS PR00169 Potassium channel signature 189 211 3.2E-6 T 14-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 SUPERFAMILY SSF53850 11 371 2.48E-52 T 14-10-2018 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 SMART SM00079 46 364 4.6E-4 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 SUPERFAMILY SSF81324 147 245 1.05E-23 T 14-10-2018 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 Gene3D G3DSA:3.40.190.10 43 152 3.8E-26 T 14-10-2018 Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 SMART SM00062 46 373 1.3E-24 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_0381 b7855fe7d324e21b16133e3c729fae5b 374 Gene3D G3DSA:1.10.287.70 153 245 1.3E-20 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Gene3D G3DSA:3.40.1110.10 534 653 8.5E-94 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Gene3D G3DSA:2.70.150.20 314 426 1.3E-42 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 SUPERFAMILY SSF55008 22 91 4.32E-22 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 293 800 1.2E-89 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 ProSitePatterns PS01047 Heavy-metal-associated domain. 97 126 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 SUPERFAMILY SSF81665 287 795 7.72E-14 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 SUPERFAMILY SSF55008 92 160 3.93E-19 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 525 531 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 SUPERFAMILY SSF81653 325 421 4.18E-29 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Gene3D G3DSA:3.30.70.100 17 88 2.0E-23 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 ProSitePatterns PS01047 Heavy-metal-associated domain. 29 58 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 236 831 7.6E-183 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Pfam PF00122 E1-E2 ATPase 322 502 9.3E-56 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 254 830 4.4E-193 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Pfam PF00702 haloacid dehalogenase-like hydrolase 519 734 1.7E-50 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Gene3D G3DSA:3.30.70.100 89 157 4.8E-20 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Gene3D G3DSA:3.40.50.1000 504 773 8.5E-94 T 14-10-2018 IPR023214 HAD superfamily Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00942 Copper-transporting ATPase 1 signature 237 262 3.6E-8 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00942 Copper-transporting ATPase 1 signature 50 73 3.6E-8 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00942 Copper-transporting ATPase 1 signature 24 49 3.6E-8 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00942 Copper-transporting ATPase 1 signature 79 99 3.6E-8 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 94 155 8.6E-10 T 14-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 26 87 9.7E-11 T 14-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 371 385 4.0E-28 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 721 740 4.0E-28 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 668 678 4.0E-28 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 523 537 4.0E-28 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 744 756 4.0E-28 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 646 657 4.0E-28 T 14-10-2018 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 SUPERFAMILY SSF56784 521 828 3.52E-61 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Pfam PF00403 Heavy-metal-associated domain 29 87 1.3E-16 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Thimo_3392 9162c709e0a7b52cdb0a66ed6a9bcb3a 858 Pfam PF00403 Heavy-metal-associated domain 97 155 8.1E-14 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Thimo_2305 c08c8cf60f3374928c28cf388faead16 226 SUPERFAMILY SSF56112 26 213 1.12E-41 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_2305 c08c8cf60f3374928c28cf388faead16 226 Gene3D G3DSA:1.10.510.10 26 223 1.3E-38 T 14-10-2018 Thimo_2305 c08c8cf60f3374928c28cf388faead16 226 SMART SM00220 1 216 3.1E-9 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_2305 c08c8cf60f3374928c28cf388faead16 226 Pfam PF00069 Protein kinase domain 28 211 7.6E-26 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 464 474 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 690 704 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 568 578 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 667 685 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR00811 Bacterial general secretion pathway protein D signature 533 557 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR01032 Gene IV protein signature 630 658 1.3E-5 T 14-10-2018 Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 PRINTS PR01032 Gene IV protein signature 558 581 1.3E-5 T 14-10-2018 Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 Pfam PF03958 Bacterial type II/III secretion system short domain 278 346 1.4E-9 T 14-10-2018 IPR005644 NolW-like Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 Pfam PF03958 Bacterial type II/III secretion system short domain 355 463 1.1E-12 T 14-10-2018 IPR005644 NolW-like Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 Gene3D G3DSA:3.30.1370.120 275 345 2.5E-9 T 14-10-2018 IPR038591 NolW-like superfamily Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 Gene3D G3DSA:3.30.1370.120 110 267 1.7E-32 T 14-10-2018 IPR038591 NolW-like superfamily Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 113 712 3.5E-149 T 14-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 Thimo_0054 037c133152641ab9f4df16b172c4fd1f 734 Pfam PF00263 Bacterial type II and III secretion system protein 537 702 3.4E-51 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 286 304 2.4E-18 T 14-10-2018 IPR006129 Adhesin B GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 189 206 2.4E-18 T 14-10-2018 IPR006129 Adhesin B GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 265 283 2.4E-18 T 14-10-2018 IPR006129 Adhesin B GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 32 53 2.4E-18 T 14-10-2018 IPR006129 Adhesin B GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 57 75 2.4E-18 T 14-10-2018 IPR006129 Adhesin B GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00691 Adhesin B signature 76 95 2.4E-18 T 14-10-2018 IPR006129 Adhesin B GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 Pfam PF01297 Zinc-uptake complex component A periplasmic 35 306 1.5E-67 T 14-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 SUPERFAMILY SSF53807 29 309 9.32E-69 T 14-10-2018 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 Gene3D G3DSA:3.40.50.1980 178 308 1.3E-47 T 14-10-2018 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 63 76 1.6E-40 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 273 292 1.6E-40 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 189 210 1.6E-40 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 76 93 1.6E-40 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 32 50 1.6E-40 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 PRINTS PR00690 Adhesin family signature 242 260 1.6E-40 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_1255 ef6b5549df58140d5c7c05dcd1110399 334 Gene3D G3DSA:3.40.50.1980 32 175 9.1E-35 T 14-10-2018 Thimo_1890 520f3ad5188978b104fafdd50affb954 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 418 32.817 T 14-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Thimo_1890 520f3ad5188978b104fafdd50affb954 424 Pfam PF13393 Histidyl-tRNA synthetase 10 310 3.2E-50 T 14-10-2018 Thimo_1890 520f3ad5188978b104fafdd50affb954 424 PIRSF PIRSF001549 1 420 8.9E-116 T 14-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Thimo_1890 520f3ad5188978b104fafdd50affb954 424 SUPERFAMILY SSF55681 4 318 1.93E-102 T 14-10-2018 Thimo_1890 520f3ad5188978b104fafdd50affb954 424 Gene3D G3DSA:3.30.930.10 2 323 4.3E-119 T 14-10-2018 Thimo_1890 520f3ad5188978b104fafdd50affb954 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 405 1.2E-152 T 14-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Thimo_1890 520f3ad5188978b104fafdd50affb954 424 Pfam PF03129 Anticodon binding domain 327 418 1.5E-9 T 14-10-2018 IPR004154 Anticodon-binding Thimo_1890 520f3ad5188978b104fafdd50affb954 424 Gene3D G3DSA:3.40.50.800 324 418 9.2E-22 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily Thimo_1890 520f3ad5188978b104fafdd50affb954 424 SUPERFAMILY SSF52954 325 418 3.11E-21 T 14-10-2018 Thimo_0135 e1a9b1077c502b81a83b3422559a96de 285 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 161 281 4.4E-12 T 14-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Thimo_0135 e1a9b1077c502b81a83b3422559a96de 285 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 153 4.3E-34 T 14-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Thimo_0135 e1a9b1077c502b81a83b3422559a96de 285 PIRSF PIRSF000103 1 284 3.3E-77 T 14-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Thimo_0135 e1a9b1077c502b81a83b3422559a96de 285 SUPERFAMILY SSF51735 1 159 5.74E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0135 e1a9b1077c502b81a83b3422559a96de 285 SUPERFAMILY SSF48179 160 282 3.06E-22 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_0135 e1a9b1077c502b81a83b3422559a96de 285 Gene3D G3DSA:3.40.50.720 1 159 4.7E-46 T 14-10-2018 Thimo_0135 e1a9b1077c502b81a83b3422559a96de 285 Gene3D G3DSA:1.10.1040.10 160 283 1.9E-24 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 PIRSF PIRSF001467 16 200 8.0E-71 T 14-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 Gene3D G3DSA:2.40.100.10 18 199 1.3E-77 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 SUPERFAMILY SSF50891 22 198 5.84E-71 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 77 94 - T 14-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 195 4.3E-47 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 144 4.2E-38 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 94 4.2E-38 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 156 4.2E-38 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 157 172 4.2E-38 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_1132 a5d22e16a6dbac9c39b130fee893a5f2 200 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 46 61 4.2E-38 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_2738 427ac9790035e61e1bfa9c969f6b2856 310 Pfam PF01758 Sodium Bile acid symporter family 36 213 3.2E-40 T 14-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 Thimo_2738 427ac9790035e61e1bfa9c969f6b2856 310 Gene3D G3DSA:1.20.1530.20 1 304 4.1E-105 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily Thimo_0007 e6132d4f64dbd60b7273737ffdc1696d 344 SUPERFAMILY SSF53335 54 336 1.87E-13 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0007 e6132d4f64dbd60b7273737ffdc1696d 344 Gene3D G3DSA:3.40.50.150 64 234 7.4E-47 T 14-10-2018 Thimo_0007 e6132d4f64dbd60b7273737ffdc1696d 344 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 37 334 1.1E-118 T 14-10-2018 IPR035094 Histidine N-alpha-methyltransferase KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 Thimo_0007 e6132d4f64dbd60b7273737ffdc1696d 344 PIRSF PIRSF018005 12 338 2.5E-110 T 14-10-2018 IPR017804 Methyltransferase EgtD-like GO:0008168 Thimo_0007 e6132d4f64dbd60b7273737ffdc1696d 344 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 38 336 1.8E-106 T 14-10-2018 IPR019257 Histidine-specific methyltransferase, SAM-dependent Thimo_0572 025b7aee09943f80f743ceeb7971fcbd 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 139 2.1E-22 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Thimo_0572 025b7aee09943f80f743ceeb7971fcbd 146 TIGRFAM TIGR02801 tolR: protein TolR 13 139 1.1E-39 T 14-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 Thimo_0572 025b7aee09943f80f743ceeb7971fcbd 146 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 6 139 27.979 T 14-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 Thimo_0572 025b7aee09943f80f743ceeb7971fcbd 146 Gene3D G3DSA:3.30.420.270 59 131 2.4E-12 T 14-10-2018 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 Pfam PF13091 PLD-like domain 135 281 1.1E-7 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 Pfam PF13091 PLD-like domain 327 445 2.9E-21 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 SMART SM00155 397 424 6.6E-5 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 SMART SM00155 221 248 4.7 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 Pfam PF13396 Phospholipase_D-nuclease N-terminal 22 59 8.3E-11 T 14-10-2018 IPR027379 Cardiolipin synthase N-terminal Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 Gene3D G3DSA:3.30.870.10 298 480 1.4E-27 T 14-10-2018 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 SUPERFAMILY SSF56024 111 313 4.08E-40 T 14-10-2018 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 Gene3D G3DSA:3.30.870.10 115 291 5.2E-33 T 14-10-2018 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 21 484 1.7E-98 T 14-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 Thimo_2058 b96d108b8f8e51b1be9d526329367df1 484 SUPERFAMILY SSF56024 292 467 1.95E-38 T 14-10-2018 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 31 466 2.0E-149 T 14-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 Gene3D G3DSA:2.40.10.120 29 261 1.0E-79 T 14-10-2018 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 Pfam PF13365 Trypsin-like peptidase domain 96 229 2.9E-34 T 14-10-2018 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 166 190 6.1E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 126 146 6.1E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 222 239 6.1E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 105 117 6.1E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 308 320 6.1E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 PRINTS PR00834 HtrA/DegQ protease family signature 200 217 6.1E-49 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 SMART SM00228 268 350 5.2E-11 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 SMART SM00228 382 462 2.7E-11 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 SUPERFAMILY SSF50156 226 351 1.13E-24 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 Gene3D G3DSA:2.30.42.10 380 474 1.0E-17 T 14-10-2018 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 Gene3D G3DSA:2.30.42.10 263 369 1.1E-27 T 14-10-2018 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 Pfam PF13180 PDZ domain 384 469 2.8E-10 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 Pfam PF13180 PDZ domain 269 357 4.5E-15 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 SUPERFAMILY SSF50494 29 259 3.81E-66 T 14-10-2018 IPR009003 Peptidase S1, PA clan Thimo_1826 895e7cd9e88c168ae0a41388cfbe8c3c 476 SUPERFAMILY SSF50156 383 470 1.45E-16 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_0485 07c0ec826cf6842ca4a1b749e0d0eb97 155 Gene3D G3DSA:1.10.10.10 1 151 1.6E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0485 07c0ec826cf6842ca4a1b749e0d0eb97 155 SUPERFAMILY SSF46785 6 145 2.77E-28 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0485 07c0ec826cf6842ca4a1b749e0d0eb97 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 1.7E-8 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_0485 07c0ec826cf6842ca4a1b749e0d0eb97 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 1.7E-8 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_0485 07c0ec826cf6842ca4a1b749e0d0eb97 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 1.7E-8 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_0485 07c0ec826cf6842ca4a1b749e0d0eb97 155 SMART SM00347 29 130 2.2E-15 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_0485 07c0ec826cf6842ca4a1b749e0d0eb97 155 Pfam PF01047 MarR family 44 94 2.5E-8 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_2334 b2b3d99041ec2e3deebb022c92661d61 531 Gene3D G3DSA:3.30.565.10 385 523 7.3E-26 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2334 b2b3d99041ec2e3deebb022c92661d61 531 SUPERFAMILY SSF55781 146 306 1.03E-8 T 14-10-2018 Thimo_2334 b2b3d99041ec2e3deebb022c92661d61 531 PIRSF PIRSF003167 48 531 3.1E-100 T 14-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 Thimo_2334 b2b3d99041ec2e3deebb022c92661d61 531 SUPERFAMILY SSF55874 386 518 4.45E-18 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2334 b2b3d99041ec2e3deebb022c92661d61 531 Gene3D G3DSA:3.30.450.40 138 314 5.4E-10 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_2334 b2b3d99041ec2e3deebb022c92661d61 531 Pfam PF07730 Histidine kinase 319 386 1.1E-13 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Thimo_2334 b2b3d99041ec2e3deebb022c92661d61 531 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 427 518 6.3E-8 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2334 b2b3d99041ec2e3deebb022c92661d61 531 SMART SM00387 425 522 3.0E-9 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 586 697 2.5E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 Pfam PF00512 His Kinase A (phospho-acceptor) domain 475 538 6.6E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 SMART SM00387 585 699 2.5E-30 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 Gene3D G3DSA:3.30.565.10 547 699 5.2E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 SUPERFAMILY SSF55874 530 697 3.41E-33 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 683 696 1.0E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 653 1.0E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 639 1.0E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 660 678 1.0E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 SMART SM00388 474 540 4.4E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 Gene3D G3DSA:1.10.287.130 470 540 3.9E-22 T 14-10-2018 Thimo_2145 c464722c12abc6ae275536f2f2d4342e 701 SUPERFAMILY SSF47384 470 539 3.53E-17 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_2411 fd4077b035ba53e46fb21e770aace66e 199 SUPERFAMILY SSF143243 5 150 6.28E-29 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2411 fd4077b035ba53e46fb21e770aace66e 199 Gene3D G3DSA:3.30.460.80 7 124 1.5E-18 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2411 fd4077b035ba53e46fb21e770aace66e 199 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 28 143 9.7E-20 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2411 fd4077b035ba53e46fb21e770aace66e 199 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 79 146 1.0E-9 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1641 52fbba078b006edc589e18e5665cd38f 366 TIGRFAM TIGR01834 PHA_synth_III_E: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit 10 317 5.3E-97 T 14-10-2018 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit Thimo_1641 52fbba078b006edc589e18e5665cd38f 366 Pfam PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) 10 306 1.1E-111 T 14-10-2018 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 SUPERFAMILY SSF81324 8 147 2.49E-15 T 14-10-2018 Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 Pfam PF02254 TrkA-N domain 126 245 3.0E-18 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 Pfam PF02254 TrkA-N domain 292 404 1.8E-19 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 SUPERFAMILY SSF51735 288 429 3.39E-26 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 Gene3D G3DSA:1.10.287.70 7 116 1.6E-9 T 14-10-2018 Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 Gene3D G3DSA:3.40.50.720 123 267 2.2E-25 T 14-10-2018 Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 SUPERFAMILY SSF51735 125 272 1.16E-24 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 Gene3D G3DSA:3.40.50.720 287 419 3.3E-25 T 14-10-2018 Thimo_1841 fd566cdbaac09c9408ca8c7ecadd8149 575 Pfam PF07885 Ion channel 20 100 5.0E-8 T 14-10-2018 IPR013099 Potassium channel domain Thimo_3688 20d1c838a16f38a9ccda7a96242982bf 564 Gene3D G3DSA:3.60.40.10 284 563 9.1E-11 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_3688 20d1c838a16f38a9ccda7a96242982bf 564 Pfam PF13672 Protein phosphatase 2C 304 548 1.5E-37 T 14-10-2018 Thimo_3688 20d1c838a16f38a9ccda7a96242982bf 564 SUPERFAMILY SSF81606 307 563 3.92E-9 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_1399 d8348098b626079180b77b99154e29fd 486 Gene3D G3DSA:3.40.50.300 130 317 3.0E-59 T 14-10-2018 Thimo_1399 d8348098b626079180b77b99154e29fd 486 Pfam PF00158 Sigma-54 interaction domain 146 312 2.7E-61 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_1399 d8348098b626079180b77b99154e29fd 486 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_1399 d8348098b626079180b77b99154e29fd 486 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_1399 d8348098b626079180b77b99154e29fd 486 SMART SM00382 166 309 1.5E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1399 d8348098b626079180b77b99154e29fd 486 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 423 440 5.3E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_1399 d8348098b626079180b77b99154e29fd 486 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 440 460 5.3E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_1399 d8348098b626079180b77b99154e29fd 486 Gene3D G3DSA:3.40.50.2300 4 121 4.7E-21 T 14-10-2018 Thimo_1399 d8348098b626079180b77b99154e29fd 486 SUPERFAMILY SSF46689 359 459 1.57E-12 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_1399 d8348098b626079180b77b99154e29fd 486 SUPERFAMILY SSF52540 145 385 3.18E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1399 d8348098b626079180b77b99154e29fd 486 SUPERFAMILY SSF52172 5 189 7.83E-27 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1399 d8348098b626079180b77b99154e29fd 486 Pfam PF02954 Bacterial regulatory protein, Fis family 417 457 8.9E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_1399 d8348098b626079180b77b99154e29fd 486 SMART SM00448 3 116 3.3E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1399 d8348098b626079180b77b99154e29fd 486 Gene3D G3DSA:1.10.10.60 409 461 4.9E-12 T 14-10-2018 Thimo_1399 d8348098b626079180b77b99154e29fd 486 Gene3D G3DSA:1.10.8.60 318 391 5.6E-21 T 14-10-2018 Thimo_1399 d8348098b626079180b77b99154e29fd 486 Pfam PF00072 Response regulator receiver domain 6 114 3.6E-14 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1399 d8348098b626079180b77b99154e29fd 486 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 SUPERFAMILY SSF53671 6 305 1.19E-103 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 52 66 2.1E-30 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 125 139 2.1E-30 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 283 294 2.1E-30 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 221 231 2.1E-30 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 85 98 2.1E-30 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 Gene3D G3DSA:3.40.50.1370 9 138 1.8E-114 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 Gene3D G3DSA:3.40.50.1370 139 299 1.8E-114 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 9 148 1.3E-47 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 54 61 - T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 9 304 3.3E-117 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 54 73 2.9E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 136 147 2.9E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 257 266 2.9E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 292 2.9E-25 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 302 2.3E-51 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Thimo_3284 d7fbee3ec9c29bd87c6a83fe7dd65f0c 308 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 8 305 79.801 T 14-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Thimo_1839 a11d3d5efd9b379e7b14f775ca41a0f1 355 ProSitePatterns PS00534 Ferrochelatase signature. 205 223 - T 14-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Thimo_1839 a11d3d5efd9b379e7b14f775ca41a0f1 355 TIGRFAM TIGR00109 hemH: ferrochelatase 15 335 7.2E-102 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Thimo_1839 a11d3d5efd9b379e7b14f775ca41a0f1 355 Pfam PF00762 Ferrochelatase 18 335 9.0E-115 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Thimo_1839 a11d3d5efd9b379e7b14f775ca41a0f1 355 Hamap MF_00323 Ferrochelatase [hemH]. 15 336 37.465 T 14-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Thimo_1839 a11d3d5efd9b379e7b14f775ca41a0f1 355 Gene3D G3DSA:3.40.50.1400 179 317 4.1E-99 T 14-10-2018 Thimo_1839 a11d3d5efd9b379e7b14f775ca41a0f1 355 Gene3D G3DSA:3.40.50.1400 18 335 4.1E-99 T 14-10-2018 Thimo_1839 a11d3d5efd9b379e7b14f775ca41a0f1 355 SUPERFAMILY SSF53800 17 343 1.08E-109 T 14-10-2018 Thimo_0857 d3724b2f812e2e508e50092f8b54f2fd 538 SUPERFAMILY SSF53649 230 517 1.23E-18 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Thimo_0857 d3724b2f812e2e508e50092f8b54f2fd 538 Pfam PF08019 Domain of unknown function (DUF1705) 49 196 2.2E-48 T 14-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 Thimo_0857 d3724b2f812e2e508e50092f8b54f2fd 538 Pfam PF00884 Sulfatase 230 514 4.0E-49 T 14-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Thimo_0857 d3724b2f812e2e508e50092f8b54f2fd 538 Gene3D G3DSA:3.40.720.10 217 537 2.7E-80 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Thimo_0231 a42caec101bdfa43be3f39bb348510f9 215 Pfam PF02508 Rnf-Nqr subunit, membrane protein 10 188 2.3E-50 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_0231 a42caec101bdfa43be3f39bb348510f9 215 PIRSF PIRSF006102 6 208 2.2E-61 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_1880 9121b022e8ddcc0ddfdcb954a626929d 114 SUPERFAMILY SSF55331 1 114 1.12E-31 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily Thimo_1880 9121b022e8ddcc0ddfdcb954a626929d 114 ProDom PD004816 MACROPHAGE MIGRATION INHIBITORY FACTOR TAUTOMERASE MIF PHENYLPYRUVATE CYTOKINE RESPONSE INFLAMMATORY 20 114 7.0E-22 T 14-10-2018 IPR001398 Macrophage migration inhibitory factor Thimo_1880 9121b022e8ddcc0ddfdcb954a626929d 114 Pfam PF01187 Macrophage migration inhibitory factor (MIF) 2 114 8.1E-23 T 14-10-2018 IPR001398 Macrophage migration inhibitory factor Thimo_1880 9121b022e8ddcc0ddfdcb954a626929d 114 Gene3D G3DSA:3.30.429.10 1 114 7.1E-37 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 Pfam PF02119 Flagellar P-ring protein 50 392 7.9E-140 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 Hamap MF_00416 Flagellar P-ring protein [flgI]. 22 393 38.163 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 111 130 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 65 80 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 217 235 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 281 293 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 150 168 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 191 209 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 50 65 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 133 150 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3495 03ea8a05f375de8e030c9f5bf4fef780 393 PRINTS PR01010 Flagellar P-ring protein signature 85 100 1.9E-85 T 14-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Thimo_3615 82565c63af4c935f778a3f5cf3eb0b24 168 SUPERFAMILY SSF49764 56 165 3.66E-30 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_3615 82565c63af4c935f778a3f5cf3eb0b24 168 Gene3D G3DSA:2.60.40.790 3 167 5.0E-31 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_3615 82565c63af4c935f778a3f5cf3eb0b24 168 Pfam PF00011 Hsp20/alpha crystallin family 68 168 6.6E-20 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 311 416 5.3E-39 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 433 742 9.9E-31 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF51971 433 684 7.06E-64 T 14-10-2018 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:3.40.50.80 100 203 1.8E-36 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF46548 297 442 1.78E-29 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:1.10.1060.10 280 430 1.5E-37 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF63380 1 91 5.29E-16 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 212 249 2.6E-11 T 14-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF52343 89 248 1.26E-32 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:2.40.30.10 1 91 6.3E-16 T 14-10-2018 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 PRINTS PR00419 Adrenodoxin reductase family signature 456 469 2.6E-16 T 14-10-2018 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 PRINTS PR00419 Adrenodoxin reductase family signature 575 589 2.6E-16 T 14-10-2018 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 PRINTS PR00419 Adrenodoxin reductase family signature 433 455 2.6E-16 T 14-10-2018 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 TIGRFAM TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric 308 755 2.5E-154 T 14-10-2018 IPR006004 Glutamate synthase (NADPH), homotetrameric KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 SUPERFAMILY SSF47240 861 1001 3.08E-23 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:1.20.1260.10 857 997 4.2E-18 T 14-10-2018 IPR012347 Ferritin-like Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:3.50.50.60 570 778 5.0E-24 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1589 a7ec1acaadd47cb418e3ee3a609de27d 1006 Gene3D G3DSA:3.50.50.60 431 558 8.4E-33 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0957 f77b8a527f2695ae131917f00315f512 232 SUPERFAMILY SSF143422 2 127 1.83E-34 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_0957 f77b8a527f2695ae131917f00315f512 232 SMART SM01321 9 124 5.4E-46 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_0957 f77b8a527f2695ae131917f00315f512 232 Pfam PF01797 Transposase IS200 like 12 122 1.3E-18 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_0957 f77b8a527f2695ae131917f00315f512 232 Gene3D G3DSA:3.30.70.1290 1 158 2.1E-41 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 Pfam PF00124 Photosynthetic reaction centre protein 52 304 1.1E-95 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 196 222 - T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 TIGRFAM TIGR01115 pufM: photosynthetic reaction center M subunit 1 306 1.2E-142 T 14-10-2018 IPR005781 Photosynthetic reaction centre, M subunit GO:0019684|GO:0030077|GO:0045156 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 SUPERFAMILY SSF81483 3 311 5.63E-115 T 14-10-2018 IPR036854 Photosystem II protein D1/D2 superfamily GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 262 287 1.7E-43 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 146 168 1.7E-43 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 56 77 1.7E-43 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 113 141 1.7E-43 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 202 228 1.7E-43 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 Gene3D G3DSA:1.20.85.10 1 145 9.4E-57 T 14-10-2018 IPR036854 Photosystem II protein D1/D2 superfamily GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2997 23377c437da26d26936fd86f36a252a0 345 Gene3D G3DSA:1.20.85.10 146 308 1.0E-69 T 14-10-2018 IPR036854 Photosystem II protein D1/D2 superfamily GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_1003 c2c8eb7ad7bf942b20273edc280db342 329 Pfam PF13439 Glycosyltransferase Family 4 76 148 1.7E-9 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1003 c2c8eb7ad7bf942b20273edc280db342 329 Gene3D G3DSA:3.40.50.2000 4 324 3.0E-37 T 14-10-2018 Thimo_1003 c2c8eb7ad7bf942b20273edc280db342 329 SUPERFAMILY SSF53756 70 327 9.94E-52 T 14-10-2018 Thimo_1003 c2c8eb7ad7bf942b20273edc280db342 329 Gene3D G3DSA:3.40.50.2000 148 308 3.0E-37 T 14-10-2018 Thimo_1003 c2c8eb7ad7bf942b20273edc280db342 329 Pfam PF00534 Glycosyl transferases group 1 162 304 4.1E-17 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_2202 c4023e34f148e30988d9c5b541cddc03 90 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 52 2.9E-10 T 14-10-2018 Thimo_2202 c4023e34f148e30988d9c5b541cddc03 90 SUPERFAMILY SSF143120 1 77 9.81E-19 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_2202 c4023e34f148e30988d9c5b541cddc03 90 Gene3D G3DSA:3.40.1620.40 3 67 9.2E-17 T 14-10-2018 Thimo_2202 c4023e34f148e30988d9c5b541cddc03 90 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 69 2.3E-15 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 Pfam PF00682 HMGL-like 8 275 3.9E-53 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 Pfam PF08502 LeuA allosteric (dimerisation) domain 372 505 1.1E-18 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 SUPERFAMILY SSF51569 6 292 4.03E-69 T 14-10-2018 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 SMART SM00917 370 506 5.4E-6 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 Gene3D G3DSA:3.30.160.340 448 510 1.1E-23 T 14-10-2018 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 Gene3D G3DSA:3.30.160.740 390 447 2.4E-11 T 14-10-2018 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 204 217 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 Gene3D G3DSA:3.20.20.70 7 325 7.3E-102 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 15 31 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_1297 08cdae32e6f74a84ff9bc0087803b541 522 SUPERFAMILY SSF110921 396 505 4.18E-11 T 14-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_3081 2071a0034f52b546db7425764fa6ecdf 405 Pfam PF13505 Outer membrane protein beta-barrel domain 211 402 5.7E-8 T 14-10-2018 IPR027385 Outer membrane protein beta-barrel Thimo_3081 2071a0034f52b546db7425764fa6ecdf 405 SUPERFAMILY SSF56935 193 393 1.05E-8 T 14-10-2018 Thimo_3081 2071a0034f52b546db7425764fa6ecdf 405 Gene3D G3DSA:2.40.160.10 165 403 1.7E-5 T 14-10-2018 IPR023614 Porin domain superfamily Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 SMART SM00917 419 547 2.4E-24 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 7 547 2.1E-215 T 14-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 Gene3D G3DSA:3.30.160.270 375 546 2.4E-46 T 14-10-2018 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 SUPERFAMILY SSF110921 450 546 5.75E-25 T 14-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 38 54 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 Pfam PF00682 HMGL-like 31 309 2.7E-71 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 Pfam PF08502 LeuA allosteric (dimerisation) domain 419 546 7.2E-23 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 SUPERFAMILY SSF51569 20 328 1.17E-96 T 14-10-2018 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 SUPERFAMILY SSF89000 386 434 2.9E-10 T 14-10-2018 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 3 548 50.026 T 14-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_0710 a9eb642900d37e5045ba71295ee38c39 556 Gene3D G3DSA:3.20.20.70 12 374 1.5E-145 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 Pfam PF00750 tRNA synthetases class I (R) 299 428 2.9E-8 T 14-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 Pfam PF00750 tRNA synthetases class I (R) 100 178 1.7E-10 T 14-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 586 26.403 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 SMART SM01016 3 91 7.6E-39 T 14-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 Gene3D G3DSA:1.10.730.10 460 586 3.2E-34 T 14-10-2018 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 Gene3D G3DSA:3.30.1360.70 1 107 6.6E-27 T 14-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 SMART SM00836 465 586 6.3E-56 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 4 91 8.7E-25 T 14-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 SUPERFAMILY SSF47323 459 586 3.14E-34 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 SUPERFAMILY SSF55190 5 111 4.71E-26 T 14-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 6 586 1.2E-135 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 1.1E-20 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 1.1E-20 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 1.1E-20 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 PRINTS PR01038 Arginyl-tRNA synthetase signature 334 355 1.1E-20 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 130 139 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 Pfam PF05746 DALR anticodon binding domain 465 586 4.0E-34 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Thimo_1740 370e886dad58c95a73b092dc2a7e2028 586 SUPERFAMILY SSF52374 114 476 7.19E-88 T 14-10-2018 Thimo_0916 48ff1f65b9e40b48a952df89e6805943 267 Gene3D G3DSA:3.30.1400.10 122 260 1.9E-39 T 14-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 Thimo_0916 48ff1f65b9e40b48a952df89e6805943 267 Hamap MF_00509 Cell division protein ZipA [zipA]. 23 255 17.304 T 14-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 Thimo_0916 48ff1f65b9e40b48a952df89e6805943 267 SUPERFAMILY SSF64383 126 257 2.09E-32 T 14-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 Thimo_0916 48ff1f65b9e40b48a952df89e6805943 267 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 126 253 2.0E-18 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Thimo_0916 48ff1f65b9e40b48a952df89e6805943 267 SMART SM00771 123 253 5.9E-27 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Thimo_0916 48ff1f65b9e40b48a952df89e6805943 267 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 126 252 3.2E-39 T 14-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Thimo_2806 4cfa717d1c4080a7a348eba3ba80fe2a 100 Gene3D G3DSA:1.10.10.370 37 100 3.3E-19 T 14-10-2018 Thimo_2806 4cfa717d1c4080a7a348eba3ba80fe2a 100 Pfam PF04358 DsrC like protein 6 100 5.3E-25 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_2806 4cfa717d1c4080a7a348eba3ba80fe2a 100 PIRSF PIRSF006223 1 100 2.8E-23 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_2806 4cfa717d1c4080a7a348eba3ba80fe2a 100 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 5 100 6.8E-22 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_2806 4cfa717d1c4080a7a348eba3ba80fe2a 100 Gene3D G3DSA:3.30.1420.10 5 36 1.4E-9 T 14-10-2018 Thimo_2806 4cfa717d1c4080a7a348eba3ba80fe2a 100 SUPERFAMILY SSF69721 5 100 3.66E-30 T 14-10-2018 IPR025526 DsrC-like domain superfamily Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 SUPERFAMILY SSF56935 17 375 2.84E-58 T 14-10-2018 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 106 116 3.3E-10 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 226 238 3.3E-10 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 161 172 3.3E-10 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 333 350 3.3E-10 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 58 69 3.3E-10 T 14-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00184 Neisseria sp. porin signature 160 177 6.2E-13 T 14-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00184 Neisseria sp. porin signature 60 85 6.2E-13 T 14-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 PRINTS PR00184 Neisseria sp. porin signature 330 354 6.2E-13 T 14-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Thimo_1186 7998ecfc362c57b6ba9093cb86e05b6f 375 Pfam PF13609 Gram-negative porin 9 358 6.2E-51 T 14-10-2018 Thimo_2824 ed94e46e428d1d20928fcfcd3596a844 342 Pfam PF01409 tRNA synthetases class II core domain (F) 96 341 7.9E-103 T 14-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 Thimo_2824 ed94e46e428d1d20928fcfcd3596a844 342 SUPERFAMILY SSF46589 17 103 1.78E-20 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Thimo_2824 ed94e46e428d1d20928fcfcd3596a844 342 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 12 341 49.318 T 14-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 Thimo_2824 ed94e46e428d1d20928fcfcd3596a844 342 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 43 341 5.6E-101 T 14-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Thimo_2824 ed94e46e428d1d20928fcfcd3596a844 342 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 24 91 2.3E-27 T 14-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Thimo_2824 ed94e46e428d1d20928fcfcd3596a844 342 SUPERFAMILY SSF55681 96 341 9.66E-82 T 14-10-2018 Thimo_2824 ed94e46e428d1d20928fcfcd3596a844 342 Gene3D G3DSA:3.30.930.10 11 342 9.4E-119 T 14-10-2018 Thimo_1083 1038adc60103983a9b6bebdef1c2fdb5 154 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 1 154 20.978 T 14-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 Thimo_1083 1038adc60103983a9b6bebdef1c2fdb5 154 Gene3D G3DSA:3.30.160.150 8 152 6.7E-32 T 14-10-2018 Thimo_1083 1038adc60103983a9b6bebdef1c2fdb5 154 Pfam PF04390 Lipopolysaccharide-assembly 31 149 2.8E-7 T 14-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 Thimo_3300 0958c25b6289d19dcc4314705eabc901 142 Pfam PF02657 Fe-S metabolism associated domain 15 136 9.4E-36 T 14-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like Thimo_3300 0958c25b6289d19dcc4314705eabc901 142 SUPERFAMILY SSF82649 9 138 1.52E-34 T 14-10-2018 Thimo_3300 0958c25b6289d19dcc4314705eabc901 142 Gene3D G3DSA:3.90.1010.10 4 142 8.1E-42 T 14-10-2018 Thimo_3043 91165adad970775971f31658404cce70 544 SUPERFAMILY SSF53738 279 415 2.08E-37 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 Gene3D G3DSA:3.40.120.10 2 188 1.5E-79 T 14-10-2018 Thimo_3043 91165adad970775971f31658404cce70 544 Gene3D G3DSA:3.40.120.10 292 389 7.0E-38 T 14-10-2018 Thimo_3043 91165adad970775971f31658404cce70 544 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 107 116 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 SUPERFAMILY SSF55957 410 544 6.28E-45 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 153 1.2E-33 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 206 225 2.5E-20 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 242 255 2.5E-20 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 271 286 2.5E-20 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 106 120 2.5E-20 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 Gene3D G3DSA:3.30.310.50 390 544 4.4E-55 T 14-10-2018 Thimo_3043 91165adad970775971f31658404cce70 544 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 295 408 1.6E-31 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 SUPERFAMILY SSF53738 183 292 1.26E-25 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 SUPERFAMILY SSF53738 4 199 6.28E-45 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_3043 91165adad970775971f31658404cce70 544 Gene3D G3DSA:3.40.120.10 189 291 9.5E-35 T 14-10-2018 Thimo_3043 91165adad970775971f31658404cce70 544 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 184 287 1.5E-12 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_2836 573be0f25583807a9e6e024a959cf375 128 Pfam PF00411 Ribosomal protein S11 18 127 3.2E-52 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Thimo_2836 573be0f25583807a9e6e024a959cf375 128 SUPERFAMILY SSF53137 14 128 6.1E-48 T 14-10-2018 Thimo_2836 573be0f25583807a9e6e024a959cf375 128 ProSitePatterns PS00054 Ribosomal protein S11 signature. 96 118 - T 14-10-2018 IPR018102 Ribosomal S11, conserved site Thimo_2836 573be0f25583807a9e6e024a959cf375 128 PIRSF PIRSF002131 1 128 1.3E-54 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Thimo_2836 573be0f25583807a9e6e024a959cf375 128 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 128 32.805 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Thimo_2836 573be0f25583807a9e6e024a959cf375 128 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 9 125 6.9E-56 T 14-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2836 573be0f25583807a9e6e024a959cf375 128 Gene3D G3DSA:3.30.420.80 2 128 3.4E-57 T 14-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_3500 1b3dc61539237b3c1abbf678f2630e1a 224 Gene3D G3DSA:2.30.30.910 90 220 2.3E-30 T 14-10-2018 Thimo_3500 1b3dc61539237b3c1abbf678f2630e1a 224 Pfam PF13860 FlgD Ig-like domain 108 177 3.4E-19 T 14-10-2018 IPR025965 FlgD Ig-like domain Thimo_3500 1b3dc61539237b3c1abbf678f2630e1a 224 Pfam PF13861 FlgD Tudor-like domain 85 221 3.0E-9 T 14-10-2018 IPR025963 FlgD Tudor-like domain Thimo_3500 1b3dc61539237b3c1abbf678f2630e1a 224 Pfam PF03963 Flagellar hook capping protein - N-terminal region 8 76 1.0E-20 T 14-10-2018 IPR005648 Flagellar hook capping protein Thimo_3500 1b3dc61539237b3c1abbf678f2630e1a 224 Gene3D G3DSA:2.60.40.4070 102 188 2.3E-30 T 14-10-2018 Thimo_0368 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0368 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 136 302 1.7E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_0368 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0368 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 2.1E-16 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_0368 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 2.6E-11 T 14-10-2018 Thimo_3530 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3530 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 136 302 1.7E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_3530 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_3530 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 2.1E-16 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_3530 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 2.6E-11 T 14-10-2018 Thimo_2313 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2313 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 136 302 1.7E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2313 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2313 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 2.1E-16 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_2313 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 2.6E-11 T 14-10-2018 Thimo_2197 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2197 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 136 302 1.7E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2197 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2197 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 2.1E-16 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_2197 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 2.6E-11 T 14-10-2018 Thimo_1421 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_1421 37e19bd4f2ada8fc568633992e0b9cbb 357 Gene3D G3DSA:3.30.420.10 136 302 1.7E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_1421 37e19bd4f2ada8fc568633992e0b9cbb 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1421 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF00665 Integrase core domain 139 254 2.1E-16 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_1421 37e19bd4f2ada8fc568633992e0b9cbb 357 Pfam PF13565 Homeodomain-like domain 35 112 2.6E-11 T 14-10-2018 Thimo_1259 2582c624874bd306d59e02d548b400ee 160 Pfam PF01864 CDP-archaeol synthase 70 157 1.4E-8 T 14-10-2018 IPR032690 CDP-archaeol synthase KEGG: 00564+2.7.7.67|MetaCyc: PWY-6349 Thimo_1249 ae0167672b1591523a5a7dcb2a2bfa42 386 Gene3D G3DSA:3.40.50.450 2 296 9.5E-107 T 14-10-2018 Thimo_1249 ae0167672b1591523a5a7dcb2a2bfa42 386 Gene3D G3DSA:1.10.10.10 299 374 2.8E-10 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1249 ae0167672b1591523a5a7dcb2a2bfa42 386 Pfam PF02481 DNA recombination-mediator protein A 81 283 2.6E-78 T 14-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Thimo_1249 ae0167672b1591523a5a7dcb2a2bfa42 386 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 76 291 1.0E-78 T 14-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Thimo_1249 ae0167672b1591523a5a7dcb2a2bfa42 386 SUPERFAMILY SSF102405 87 289 3.97E-43 T 14-10-2018 Thimo_1249 ae0167672b1591523a5a7dcb2a2bfa42 386 SUPERFAMILY SSF47781 9 65 3.06E-6 T 14-10-2018 IPR010994 RuvA domain 2-like Thimo_3333 d919c72567104ab4874f500afc65a258 113 SUPERFAMILY SSF52833 1 102 1.38E-35 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_3333 d919c72567104ab4874f500afc65a258 113 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 100 6.4E-43 T 14-10-2018 IPR004480 Monothiol glutaredoxin-related Thimo_3333 d919c72567104ab4874f500afc65a258 113 PIRSF PIRSF005894 1 107 2.5E-45 T 14-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 Thimo_3333 d919c72567104ab4874f500afc65a258 113 Pfam PF00462 Glutaredoxin 16 80 3.6E-19 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Thimo_3333 d919c72567104ab4874f500afc65a258 113 Gene3D G3DSA:3.40.30.10 6 102 6.8E-33 T 14-10-2018 Thimo_1314 d7838a28a67ca2e927dc0e9db9f2bf3b 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 14-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_1314 d7838a28a67ca2e927dc0e9db9f2bf3b 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.7E-42 T 14-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1314 d7838a28a67ca2e927dc0e9db9f2bf3b 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 2.4E-41 T 14-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1314 d7838a28a67ca2e927dc0e9db9f2bf3b 104 SUPERFAMILY SSF141091 1 102 2.88E-38 T 14-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1314 d7838a28a67ca2e927dc0e9db9f2bf3b 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.876 T 14-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2184 db6819fe7bf77954b4e1ac8ba3bb89ed 168 SUPERFAMILY SSF55021 86 144 7.08E-9 T 14-10-2018 Thimo_2184 db6819fe7bf77954b4e1ac8ba3bb89ed 168 Gene3D G3DSA:3.30.70.260 1 75 1.5E-19 T 14-10-2018 Thimo_2184 db6819fe7bf77954b4e1ac8ba3bb89ed 168 Pfam PF13740 ACT domain 86 122 1.0E-5 T 14-10-2018 Thimo_2184 db6819fe7bf77954b4e1ac8ba3bb89ed 168 Pfam PF13740 ACT domain 2 69 3.9E-12 T 14-10-2018 Thimo_2184 db6819fe7bf77954b4e1ac8ba3bb89ed 168 Gene3D G3DSA:3.30.70.260 82 163 3.7E-11 T 14-10-2018 Thimo_2184 db6819fe7bf77954b4e1ac8ba3bb89ed 168 SUPERFAMILY SSF55021 2 73 7.08E-14 T 14-10-2018 Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 SUPERFAMILY SSF54631 62 199 9.73E-33 T 14-10-2018 Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 SMART SM01091 201 279 3.7E-31 T 14-10-2018 IPR005170 Transporter-associated domain Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 SUPERFAMILY SSF56176 200 281 4.64E-23 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 Gene3D G3DSA:3.30.465.10 191 278 2.5E-29 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 Gene3D G3DSA:3.10.580.10 47 190 9.8E-53 T 14-10-2018 Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 Pfam PF03471 Transporter associated domain 203 277 1.1E-21 T 14-10-2018 IPR005170 Transporter-associated domain Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 SMART SM00116 137 185 3.1 T 14-10-2018 IPR000644 CBS domain Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 SMART SM00116 74 123 1.1E-4 T 14-10-2018 IPR000644 CBS domain Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 Pfam PF00571 CBS domain 139 185 9.7E-4 T 14-10-2018 IPR000644 CBS domain Thimo_0667 0d0df9d63c8c1b275b9471eb19c1a640 295 Pfam PF00571 CBS domain 65 121 8.0E-9 T 14-10-2018 IPR000644 CBS domain Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SMART SM00487 331 551 1.5E-20 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SMART SM00487 1159 1381 0.065 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.40.50.300 317 531 2.5E-57 T 14-10-2018 Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF00270 DEAD/DEAH box helicase 347 518 2.5E-20 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.40.50.300 1157 1377 9.3E-50 T 14-10-2018 Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF13245 AAA domain 1170 1356 2.3E-32 T 14-10-2018 Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SUPERFAMILY SSF52540 1165 1636 1.84E-83 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.30.420.10 66 189 1.1E-7 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Gene3D G3DSA:3.40.50.300 543 733 3.1E-40 T 14-10-2018 Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SMART SM00490 595 676 4.9E-24 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SUPERFAMILY SSF52540 357 688 2.54E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 SUPERFAMILY SSF53098 83 181 3.92E-8 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF13361 UvrD-like helicase C-terminal domain 1571 1634 5.3E-13 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 Pfam PF00271 Helicase conserved C-terminal domain 584 674 4.2E-14 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_0334 94444f6b5b7a3dc4eed7aae2af0c652a 1792 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 326 694 4.5E-82 T 14-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 Thimo_2492 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 Gene3D G3DSA:3.50.50.60 5 343 2.8E-88 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2492 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 4 346 1.6E-84 T 14-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 Thimo_2492 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 Pfam PF01266 FAD dependent oxidoreductase 4 342 1.8E-66 T 14-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Thimo_2492 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 SUPERFAMILY SSF51905 3 358 7.12E-50 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2492 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 SUPERFAMILY SSF54373 216 303 5.23E-18 T 14-10-2018 Thimo_2492 e1cfeba0c30b1fa1bdbb6dd9f3fc57e3 361 Gene3D G3DSA:3.30.9.10 89 302 2.8E-88 T 14-10-2018 Thimo_3310 184dfb4a81045f47bbdb3dfece1f021f 332 SUPERFAMILY SSF53474 42 325 2.91E-55 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3310 184dfb4a81045f47bbdb3dfece1f021f 332 Gene3D G3DSA:3.40.50.1820 34 327 1.1E-56 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3310 184dfb4a81045f47bbdb3dfece1f021f 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 162 175 7.8E-16 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3310 184dfb4a81045f47bbdb3dfece1f021f 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 112 7.8E-16 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3310 184dfb4a81045f47bbdb3dfece1f021f 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 270 284 7.8E-16 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3310 184dfb4a81045f47bbdb3dfece1f021f 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 148 161 7.8E-16 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3310 184dfb4a81045f47bbdb3dfece1f021f 332 Pfam PF12697 Alpha/beta hydrolase family 74 314 7.0E-19 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3236 fd1fa373e3763b49e2b4a56deb6e3b6b 596 Gene3D G3DSA:1.10.645.10 2 581 2.3E-263 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3236 fd1fa373e3763b49e2b4a56deb6e3b6b 596 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 53 78 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Thimo_3236 fd1fa373e3763b49e2b4a56deb6e3b6b 596 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 572 581 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Thimo_3236 fd1fa373e3763b49e2b4a56deb6e3b6b 596 Pfam PF00374 Nickel-dependent hydrogenase 53 581 3.3E-230 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Thimo_3236 fd1fa373e3763b49e2b4a56deb6e3b6b 596 SUPERFAMILY SSF56762 10 581 2.62E-177 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2931 f2d73722696b13c8f71a615ccc11deed 342 SUPERFAMILY SSF53300 84 282 1.48E-37 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_2931 f2d73722696b13c8f71a615ccc11deed 342 Gene3D G3DSA:3.40.50.410 86 286 1.5E-54 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_2931 f2d73722696b13c8f71a615ccc11deed 342 SMART SM00327 86 286 6.4E-24 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_2931 f2d73722696b13c8f71a615ccc11deed 342 Pfam PF00092 von Willebrand factor type A domain 88 279 2.4E-29 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_1832 5ea73d9f16bdfba69f3a64fcdf70214f 239 Gene3D G3DSA:2.40.50.140 7 82 3.5E-25 T 14-10-2018 Thimo_1832 5ea73d9f16bdfba69f3a64fcdf70214f 239 Gene3D G3DSA:1.20.1440.120 84 239 3.7E-50 T 14-10-2018 Thimo_1832 5ea73d9f16bdfba69f3a64fcdf70214f 239 Pfam PF02565 Recombination protein O C terminal 89 231 2.5E-26 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Thimo_1832 5ea73d9f16bdfba69f3a64fcdf70214f 239 Hamap MF_00201 DNA repair protein RecO [recO]. 6 236 21.748 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Thimo_1832 5ea73d9f16bdfba69f3a64fcdf70214f 239 SUPERFAMILY SSF57863 90 223 1.36E-11 T 14-10-2018 IPR037278 ARFGAP/RecO-like zinc finger Thimo_1832 5ea73d9f16bdfba69f3a64fcdf70214f 239 Pfam PF11967 Recombination protein O N terminal 10 80 2.5E-14 T 14-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal Thimo_1832 5ea73d9f16bdfba69f3a64fcdf70214f 239 SUPERFAMILY SSF50249 10 79 1.16E-9 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1832 5ea73d9f16bdfba69f3a64fcdf70214f 239 TIGRFAM TIGR00613 reco: DNA repair protein RecO 11 234 2.0E-27 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 2.2E-16 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 SMART SM00448 2 116 3.1E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 SUPERFAMILY SSF52172 1 127 1.85E-33 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 4.0E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 4.0E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 4.0E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 Gene3D G3DSA:3.40.50.12740 2 210 5.8E-58 T 14-10-2018 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 SUPERFAMILY SSF46894 141 210 3.74E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 SMART SM00421 147 204 1.6E-18 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 Pfam PF00072 Response regulator receiver domain 4 116 2.2E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2618 6536100cc1b7c62bedba8ccb7aba363c 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_1004 0e389451076fb904d47251845ee462d4 380 Gene3D G3DSA:3.40.50.2000 187 368 5.2E-33 T 14-10-2018 Thimo_1004 0e389451076fb904d47251845ee462d4 380 Pfam PF13579 Glycosyl transferase 4-like domain 16 174 1.3E-13 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1004 0e389451076fb904d47251845ee462d4 380 SUPERFAMILY SSF53756 11 368 2.15E-57 T 14-10-2018 Thimo_1004 0e389451076fb904d47251845ee462d4 380 Gene3D G3DSA:3.40.50.2000 2 182 1.2E-13 T 14-10-2018 Thimo_1004 0e389451076fb904d47251845ee462d4 380 Pfam PF00534 Glycosyl transferases group 1 189 337 1.3E-22 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_0729 32e392775c2870482b159dc01773ff77 343 Gene3D G3DSA:3.40.1390.10 2 100 1.6E-26 T 14-10-2018 Thimo_0729 32e392775c2870482b159dc01773ff77 343 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 142 183 9.2E-6 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0729 32e392775c2870482b159dc01773ff77 343 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 260 2.1E-5 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_0729 32e392775c2870482b159dc01773ff77 343 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 12 329 36.693 T 14-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Thimo_0729 32e392775c2870482b159dc01773ff77 343 SUPERFAMILY SSF51161 38 319 1.01E-78 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_0729 32e392775c2870482b159dc01773ff77 343 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 26 91 5.3E-20 T 14-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 Thimo_0729 32e392775c2870482b159dc01773ff77 343 Gene3D G3DSA:2.160.10.10 102 312 3.0E-62 T 14-10-2018 Thimo_0729 32e392775c2870482b159dc01773ff77 343 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 12 332 9.1E-114 T 14-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:1.20.1640.10 502 1008 0.0 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Pfam PF00873 AcrB/AcrD/AcrF family 4 1011 4.5E-299 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:1.20.1640.10 10 501 0.0 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 612 626 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 2.8E-82 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.70.1440 653 851 0.0 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.70.1430 40 802 0.0 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82693 137 324 6.02E-24 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.70.1320 134 326 0.0 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82714 183 266 1.44E-18 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82866 291 488 1.7E-46 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.2090.10 705 794 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82693 40 134 5.75E-25 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.70.1430 556 652 0.0 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82866 791 1014 2.49E-50 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82693 554 654 9.42E-16 T 14-10-2018 Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 SUPERFAMILY SSF82714 706 791 1.2E-17 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1931 56f6941dfdcdd01a3c8a7df095350517 1036 Gene3D G3DSA:3.30.2090.10 178 269 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1217 9cfd3f0bd0fb12815d64a01dde04e3e2 172 Gene3D G3DSA:3.10.50.40 8 155 6.6E-32 T 14-10-2018 Thimo_1217 9cfd3f0bd0fb12815d64a01dde04e3e2 172 SUPERFAMILY SSF54534 8 145 2.95E-16 T 14-10-2018 Thimo_1217 9cfd3f0bd0fb12815d64a01dde04e3e2 172 Gene3D G3DSA:2.40.10.330 76 126 6.6E-32 T 14-10-2018 Thimo_1526 22a3872987290231a678cc5bd8fe2fd2 43 Pfam PF11295 Protein of unknown function (DUF3096) 7 42 1.1E-17 T 14-10-2018 IPR021446 Protein of unknown function DUF3096 Thimo_3085 fcb6106c2d4c947407e0a59c71350e0b 322 Gene3D G3DSA:1.10.530.10 88 228 3.8E-35 T 14-10-2018 Thimo_3085 fcb6106c2d4c947407e0a59c71350e0b 322 SUPERFAMILY SSF53955 83 216 5.94E-34 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_3085 fcb6106c2d4c947407e0a59c71350e0b 322 Pfam PF01464 Transglycosylase SLT domain 95 202 7.2E-26 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Thimo_0191 a94376a1b3292d954435629c8ce09331 800 Pfam PF00753 Metallo-beta-lactamase superfamily 537 721 1.9E-11 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_0191 a94376a1b3292d954435629c8ce09331 800 Gene3D G3DSA:3.60.15.10 530 764 4.1E-46 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0191 a94376a1b3292d954435629c8ce09331 800 SUPERFAMILY SSF56281 527 765 9.48E-42 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0191 a94376a1b3292d954435629c8ce09331 800 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 137 755 9.3E-99 T 14-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 Thimo_0191 a94376a1b3292d954435629c8ce09331 800 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 259 435 1.1E-23 T 14-10-2018 IPR004477 ComEC/Rec2-related protein Thimo_0191 a94376a1b3292d954435629c8ce09331 800 Pfam PF03772 Competence protein 237 502 4.8E-63 T 14-10-2018 IPR004477 ComEC/Rec2-related protein Thimo_0191 a94376a1b3292d954435629c8ce09331 800 SMART SM00849 540 726 7.9E-10 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_0191 a94376a1b3292d954435629c8ce09331 800 Pfam PF13567 Domain of unknown function (DUF4131) 46 195 3.2E-31 T 14-10-2018 IPR025405 Domain of unknown function DUF4131 Thimo_0013 012d5d176868603c15acf5430d01d8c4 133 Gene3D G3DSA:3.30.700.10 8 133 3.0E-29 T 14-10-2018 Thimo_0013 012d5d176868603c15acf5430d01d8c4 133 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 28 9.2E-12 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0013 012d5d176868603c15acf5430d01d8c4 133 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 1.1E-10 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0013 012d5d176868603c15acf5430d01d8c4 133 SUPERFAMILY SSF54523 8 110 1.67E-21 T 14-10-2018 Thimo_0013 012d5d176868603c15acf5430d01d8c4 133 Pfam PF00114 Pilin (bacterial filament) 37 133 4.4E-5 T 14-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 Thimo_0013 012d5d176868603c15acf5430d01d8c4 133 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 51 63 8.6E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 8 21 8.6E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 395 414 8.6E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 247 262 8.6E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 319 335 8.6E-34 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 SMART SM00836 586 691 0.0047 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 SUPERFAMILY SSF109604 343 491 9.94E-17 T 14-10-2018 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 551 3.6E-206 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 Pfam PF05746 DALR anticodon binding domain 583 678 2.5E-6 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 4 691 24.579 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_3685 767d17f0e4e21dec5a2be530040c5b87 693 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 4 692 4.8E-233 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Thimo_1954 861faefde2e710749ec91fbb5506e169 343 SUPERFAMILY SSF101790 260 339 7.85E-9 T 14-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Thimo_1954 861faefde2e710749ec91fbb5506e169 343 PIRSF PIRSF006487 28 341 4.2E-19 T 14-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Thimo_1954 861faefde2e710749ec91fbb5506e169 343 Gene3D G3DSA:3.30.70.1630 38 209 5.7E-43 T 14-10-2018 Thimo_1954 861faefde2e710749ec91fbb5506e169 343 Gene3D G3DSA:3.30.70.1400 41 128 5.7E-43 T 14-10-2018 Thimo_1954 861faefde2e710749ec91fbb5506e169 343 Gene3D G3DSA:2.40.30.160 212 332 3.1E-34 T 14-10-2018 Thimo_1954 861faefde2e710749ec91fbb5506e169 343 Pfam PF01571 Aminomethyltransferase folate-binding domain 32 227 5.6E-14 T 14-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain Thimo_1954 861faefde2e710749ec91fbb5506e169 343 SUPERFAMILY SSF103025 31 258 7.53E-62 T 14-10-2018 Thimo_1954 861faefde2e710749ec91fbb5506e169 343 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 203 267 2.2E-27 T 14-10-2018 IPR017703 YgfZ/GcvT conserved site Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 SUPERFAMILY SSF51306 65 269 2.22E-68 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 52 253 5.1E-48 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 Gene3D G3DSA:2.170.230.10 142 213 1.9E-68 T 14-10-2018 Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 Gene3D G3DSA:2.10.109.10 65 254 1.9E-68 T 14-10-2018 Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 ProSitePatterns PS00760 Signal peptidases I lysine active site. 133 145 - T 14-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 214 233 1.0E-23 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 67 83 1.0E-23 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 131 143 1.0E-23 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 ProSitePatterns PS00501 Signal peptidases I serine active site. 76 83 - T 14-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Thimo_1828 ecfa9a972f5642e73021cba92f53ec60 273 Pfam PF00717 Peptidase S24-like 73 155 1.6E-22 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 Gene3D G3DSA:2.60.40.1250 19 155 6.4E-38 T 14-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 Gene3D G3DSA:2.60.40.1250 208 348 8.7E-33 T 14-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 401 606 9.1E-17 T 14-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 Pfam PF11412 Disulphide bond corrector protein DsbC 27 142 8.2E-31 T 14-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 Pfam PF11412 Disulphide bond corrector protein DsbC 214 334 2.0E-24 T 14-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 7 810 34.485 T 14-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 Gene3D G3DSA:3.40.30.10 684 810 1.7E-27 T 14-10-2018 Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 Pfam PF13899 Thioredoxin-like 699 782 6.7E-14 T 14-10-2018 Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 SUPERFAMILY SSF74863 213 336 9.02E-27 T 14-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 SUPERFAMILY SSF52833 699 807 1.07E-17 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0179 fc5d2b18717cba09a189ca9806db4d1b 811 SUPERFAMILY SSF74863 26 143 1.96E-32 T 14-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Thimo_0630 e0a6473d4bcb40b5ed28df49750c1903 118 Pfam PF07238 PilZ domain 4 94 5.9E-7 T 14-10-2018 IPR009875 PilZ domain GO:0035438 Thimo_0630 e0a6473d4bcb40b5ed28df49750c1903 118 SUPERFAMILY SSF141371 3 89 1.61E-8 T 14-10-2018 Thimo_0630 e0a6473d4bcb40b5ed28df49750c1903 118 Gene3D G3DSA:2.40.10.220 1 98 6.5E-9 T 14-10-2018 Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 Pfam PF13537 Glutamine amidotransferase domain 69 164 2.9E-16 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 SUPERFAMILY SSF56235 1 223 3.86E-32 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 Pfam PF00733 Asparagine synthase 502 591 3.2E-11 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 Pfam PF00733 Asparagine synthase 240 373 4.4E-25 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 PIRSF PIRSF001589 1 375 1.0E-52 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 PIRSF PIRSF001589 496 592 1.8E-5 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 SUPERFAMILY SSF52402 218 563 5.24E-31 T 14-10-2018 Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 Gene3D G3DSA:3.60.20.10 6 222 1.1E-31 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 Gene3D G3DSA:3.40.50.620 497 576 1.8E-6 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3589 b2c590856939e4b2f9cd05b74424caf5 617 Gene3D G3DSA:3.40.50.620 226 409 6.2E-25 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 25 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:2.40.50.140 571 681 1.7E-32 T 14-10-2018 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 Pfam PF09334 tRNA synthetases class I (M) 7 395 1.5E-154 T 14-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF50249 576 680 1.96E-30 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 534 1.3E-174 T 14-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:1.10.730.10 388 526 6.2E-31 T 14-10-2018 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 564 681 4.9E-41 T 14-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 Pfam PF01588 Putative tRNA binding domain 586 678 6.7E-22 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:2.20.28.20 141 175 7.3E-153 T 14-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 383 394 3.1E-24 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 3.1E-24 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 290 305 3.1E-24 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 3.1E-24 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 250 261 3.1E-24 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 3.1E-24 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF47323 389 547 2.17E-39 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 Hamap MF_00098 Methionine--tRNA ligase [metG]. 5 545 39.912 T 14-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF52374 4 385 3.52E-103 T 14-10-2018 Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 Gene3D G3DSA:3.40.50.620 7 383 7.3E-153 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0959 56c1792dfcd309ff4e2130d7292738f6 681 SUPERFAMILY SSF57770 141 175 1.44E-11 T 14-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_3197 9b30deeaf294017ec7db67e9fb2ecb40 224 Gene3D G3DSA:3.40.50.2300 1 121 8.8E-38 T 14-10-2018 Thimo_3197 9b30deeaf294017ec7db67e9fb2ecb40 224 SUPERFAMILY SSF52172 1 172 6.64E-38 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_3197 9b30deeaf294017ec7db67e9fb2ecb40 224 Pfam PF00072 Response regulator receiver domain 3 112 7.5E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3197 9b30deeaf294017ec7db67e9fb2ecb40 224 Gene3D G3DSA:1.10.10.10 122 223 3.7E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3197 9b30deeaf294017ec7db67e9fb2ecb40 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 2.9E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3197 9b30deeaf294017ec7db67e9fb2ecb40 224 SMART SM00862 145 220 1.1E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3197 9b30deeaf294017ec7db67e9fb2ecb40 224 SMART SM00448 1 112 3.3E-39 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0777 546018c3ebc1d19725360fa77d6fe5d6 576 SUPERFAMILY SSF56762 1 561 2.49E-176 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0777 546018c3ebc1d19725360fa77d6fe5d6 576 Gene3D G3DSA:1.10.645.10 1 561 1.3E-258 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0777 546018c3ebc1d19725360fa77d6fe5d6 576 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Thimo_0777 546018c3ebc1d19725360fa77d6fe5d6 576 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 552 561 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Thimo_0777 546018c3ebc1d19725360fa77d6fe5d6 576 Pfam PF00374 Nickel-dependent hydrogenase 39 561 1.9E-229 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 72 5.2E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 SUPERFAMILY SSF53850 98 306 2.04E-38 T 14-10-2018 Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 Gene3D G3DSA:3.40.190.10 173 278 2.0E-71 T 14-10-2018 Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 1.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 1.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 1.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 Gene3D G3DSA:1.10.10.10 11 100 2.5E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 SUPERFAMILY SSF46785 12 121 1.48E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 Pfam PF03466 LysR substrate binding domain 98 303 1.8E-33 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_1454 bba7885821754cdc1a540b0e981580b2 311 Gene3D G3DSA:3.40.190.10 101 301 2.0E-71 T 14-10-2018 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 304 19.268 T 14-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 Gene3D G3DSA:2.30.130.10 246 306 4.9E-22 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 Gene3D G3DSA:3.30.2350.10 1 244 3.0E-87 T 14-10-2018 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 SUPERFAMILY SSF55120 11 225 1.75E-78 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 212 1.4E-74 T 14-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 248 304 7.3E-21 T 14-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 34 181 5.3E-57 T 14-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 182 244 2.4E-18 T 14-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 Thimo_0705 508c1ffcfa9a8c31aca9eba56dbef968 307 SUPERFAMILY SSF88697 247 304 8.57E-14 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_0493 43131d68a14033a3efd2bd18f4d5c596 550 SMART SM00729 195 406 1.8E-28 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0493 43131d68a14033a3efd2bd18f4d5c596 550 TIGRFAM TIGR02026 BchE: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2 491 2.7E-230 T 14-10-2018 Thimo_0493 43131d68a14033a3efd2bd18f4d5c596 550 SUPERFAMILY SSF102114 200 396 4.58E-37 T 14-10-2018 Thimo_0493 43131d68a14033a3efd2bd18f4d5c596 550 Gene3D G3DSA:3.80.30.20 196 399 2.1E-21 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0493 43131d68a14033a3efd2bd18f4d5c596 550 Pfam PF02310 B12 binding domain 14 131 2.4E-20 T 14-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Thimo_0493 43131d68a14033a3efd2bd18f4d5c596 550 Pfam PF04055 Radical SAM superfamily 201 362 1.0E-18 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0493 43131d68a14033a3efd2bd18f4d5c596 550 Gene3D G3DSA:3.40.50.280 37 141 1.7E-5 T 14-10-2018 Thimo_0625 45813c3d656f883f0e904c23b1452528 239 SUPERFAMILY SSF55073 89 238 4.12E-37 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_0625 45813c3d656f883f0e904c23b1452528 239 Gene3D G3DSA:3.30.70.270 71 239 4.2E-45 T 14-10-2018 Thimo_0625 45813c3d656f883f0e904c23b1452528 239 SMART SM00267 71 239 3.0E-36 T 14-10-2018 IPR000160 GGDEF domain Thimo_0625 45813c3d656f883f0e904c23b1452528 239 Pfam PF00990 Diguanylate cyclase, GGDEF domain 82 235 1.3E-35 T 14-10-2018 IPR000160 GGDEF domain Thimo_0625 45813c3d656f883f0e904c23b1452528 239 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 81 238 1.5E-41 T 14-10-2018 IPR000160 GGDEF domain Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 75 94 1.0E-47 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 229 246 1.0E-47 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 142 159 1.0E-47 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 123 140 1.0E-47 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 PRINTS PR00151 Porphobilinogen deaminase signature 44 64 1.0E-47 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 Gene3D G3DSA:3.40.190.10 102 201 2.8E-83 T 14-10-2018 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 225 294 8.2E-20 T 14-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 296 6.3E-111 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 SUPERFAMILY SSF54782 219 305 2.48E-26 T 14-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 Gene3D G3DSA:3.40.190.10 5 208 2.8E-83 T 14-10-2018 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 296 38.547 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 SUPERFAMILY SSF53850 4 217 6.73E-82 T 14-10-2018 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 211 2.1E-78 T 14-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 PIRSF PIRSF001438 1 308 4.4E-119 T 14-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 Gene3D G3DSA:3.30.160.40 220 305 3.3E-29 T 14-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1359 8f20d3c90e900c427a3a75fd0bd35451 308 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 230 246 - T 14-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_2528 e300d3efff2b80002c4bdf81d4ca5d7f 463 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 250 456 3.8E-16 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_2528 e300d3efff2b80002c4bdf81d4ca5d7f 463 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 169 458 1.4E-85 T 14-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 Thimo_2528 e300d3efff2b80002c4bdf81d4ca5d7f 463 Gene3D G3DSA:1.10.3720.10 231 461 2.0E-34 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2528 e300d3efff2b80002c4bdf81d4ca5d7f 463 Pfam PF12501 Phosphate ATP-binding cassette transporter 7 181 2.3E-36 T 14-10-2018 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 Thimo_2528 e300d3efff2b80002c4bdf81d4ca5d7f 463 SUPERFAMILY SSF161098 188 450 2.09E-31 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF55785 853 970 2.28E-6 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF47757 228 295 4.97E-12 T 14-10-2018 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 SMART SM00091 741 806 0.55 T 14-10-2018 IPR000014 PAS domain Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 SMART SM00091 854 922 9.3 T 14-10-2018 IPR000014 PAS domain Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 Pfam PF03705 CheR methyltransferase, all-alpha domain 230 279 3.5E-13 T 14-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:3.40.50.180 23 212 7.8E-62 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 SMART SM00138 227 488 6.9E-92 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 447 470 1.2E-24 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 428 442 1.2E-24 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 249 262 1.2E-24 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 362 378 1.2E-24 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 PRINTS PR00996 Glutamate methyltransferase family signature 326 346 1.2E-24 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 Pfam PF13596 PAS domain 743 848 8.2E-19 T 14-10-2018 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:3.30.450.20 725 848 5.5E-9 T 14-10-2018 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF55785 732 848 1.81E-8 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:3.30.450.20 849 980 3.2E-8 T 14-10-2018 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 Pfam PF01739 CheR methyltransferase, SAM binding domain 294 485 7.5E-54 T 14-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 Pfam PF01339 CheB methylesterase 29 200 4.3E-53 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 Gene3D G3DSA:3.40.50.150 292 489 3.3E-62 T 14-10-2018 Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF53335 293 486 5.01E-49 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2816 a3d3d09c408b375389d0646303da2d0f 980 SUPERFAMILY SSF52738 27 209 8.63E-55 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_0759 9a7e5c0acf2904e84b1511c65968a77d 128 Gene3D G3DSA:3.30.1330.40 1 126 2.3E-53 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_0759 9a7e5c0acf2904e84b1511c65968a77d 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 102 120 - T 14-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 Thimo_0759 9a7e5c0acf2904e84b1511c65968a77d 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 1.0E-51 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 Thimo_0759 9a7e5c0acf2904e84b1511c65968a77d 128 SUPERFAMILY SSF55298 1 126 2.36E-47 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_0759 9a7e5c0acf2904e84b1511c65968a77d 128 Pfam PF01042 Endoribonuclease L-PSP 9 124 3.8E-43 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 Gene3D G3DSA:3.40.50.11060 19 138 8.1E-36 T 14-10-2018 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 360 1.3E-145 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 PIRSF PIRSF006809 3 422 1.7E-142 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.2E-8 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 1.2E-8 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 Pfam PF01926 50S ribosome-binding GTPase 200 318 1.2E-18 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 1.3E-29 T 14-10-2018 IPR025121 GTPase HflX, N-terminal Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 Hamap MF_00900 GTPase HflX [hflX]. 27 390 48.0 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 Gene3D G3DSA:3.40.50.300 197 369 1.0E-36 T 14-10-2018 Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 2.1E-27 T 14-10-2018 IPR032305 GTP-binding protein, middle domain Thimo_2391 de2c4c33da3ee5ee8d91542735933cd8 445 SUPERFAMILY SSF52540 198 362 9.37E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1823 30fe8a3944c01bdd5301c962cc82f51b 194 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 6 88 6.8E-17 T 14-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 Thimo_1823 30fe8a3944c01bdd5301c962cc82f51b 194 Gene3D G3DSA:1.10.10.880 5 73 1.2E-14 T 14-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 Thimo_1823 30fe8a3944c01bdd5301c962cc82f51b 194 SUPERFAMILY SSF89069 6 73 5.75E-12 T 14-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 Thimo_2785 7a317ac7dfd2aa0b83c209cbebadf02b 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 21 90 7.6E-14 T 14-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Thimo_2785 7a317ac7dfd2aa0b83c209cbebadf02b 95 Gene3D G3DSA:1.10.20.60 2 93 2.5E-21 T 14-10-2018 Thimo_2785 7a317ac7dfd2aa0b83c209cbebadf02b 95 SUPERFAMILY SSF141000 5 93 6.28E-25 T 14-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 Thimo_2785 7a317ac7dfd2aa0b83c209cbebadf02b 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 6 95 7.5E-27 T 14-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Thimo_2785 7a317ac7dfd2aa0b83c209cbebadf02b 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 20.557 T 14-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 14 30 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 Gene3D G3DSA:3.20.20.70 3 278 1.5E-109 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 7 500 1.1E-218 T 14-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 201 214 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 Pfam PF00682 HMGL-like 7 275 1.7E-97 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 4 512 43.869 T 14-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 SUPERFAMILY SSF110921 393 502 5.49E-26 T 14-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 SUPERFAMILY SSF51569 4 293 3.81E-100 T 14-10-2018 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 Pfam PF08502 LeuA allosteric (dimerisation) domain 372 503 1.1E-36 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 Gene3D G3DSA:3.30.160.270 396 504 2.0E-11 T 14-10-2018 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 Gene3D G3DSA:1.10.238.260 282 395 2.2E-36 T 14-10-2018 Thimo_3363 f5bf17503c744b90c159b781f9e97cbd 516 SMART SM00917 372 503 1.6E-40 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.70.1430 38 804 4.7E-233 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82866 793 1034 2.75E-38 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.70.1320 131 327 4.7E-233 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.70.1430 554 656 4.7E-233 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.2090.10 181 272 4.7E-233 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:1.20.1640.10 506 1030 4.7E-233 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:1.20.1640.10 9 505 4.7E-233 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Pfam PF00873 AcrB/AcrD/AcrF family 1 1032 2.8E-174 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.9E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 3.9E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 3.9E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 3.9E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 3.9E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.9E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 3.9E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82714 184 265 3.92E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.70.1440 657 855 4.7E-233 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82866 292 490 1.05E-39 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82714 707 792 1.19E-10 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 Gene3D G3DSA:3.30.2090.10 708 796 4.7E-233 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82693 39 130 2.09E-16 T 14-10-2018 Thimo_1228 3c17dbf7402b828719e6ded3f244060f 1055 SUPERFAMILY SSF82693 148 325 4.81E-10 T 14-10-2018 Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 Gene3D G3DSA:1.25.40.10 52 152 3.6E-22 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 Pfam PF08238 Sel1 repeat 102 137 2.2E-4 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 Pfam PF08238 Sel1 repeat 67 101 3.5E-5 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 Pfam PF08238 Sel1 repeat 181 217 7.7E-5 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 SMART SM00671 102 137 3.8E-4 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 SMART SM00671 181 217 6.5E-6 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 SMART SM00671 65 101 1.9E-5 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 SUPERFAMILY SSF81901 54 145 1.57E-15 T 14-10-2018 Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 SUPERFAMILY SSF81901 175 225 2.22E-6 T 14-10-2018 Thimo_0821 a47ba4ee9a90fd34745dbf57878c826f 234 Gene3D G3DSA:1.25.40.10 165 233 1.2E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2864 4ee33c4ac17281805095e9b984357f88 156 SUPERFAMILY SSF47973 6 149 9.16E-63 T 14-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Thimo_2864 4ee33c4ac17281805095e9b984357f88 156 Gene3D G3DSA:1.10.455.10 2 155 2.5E-63 T 14-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Thimo_2864 4ee33c4ac17281805095e9b984357f88 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 14-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2864 4ee33c4ac17281805095e9b984357f88 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.3E-68 T 14-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Thimo_2864 4ee33c4ac17281805095e9b984357f88 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.36 T 14-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Thimo_2864 4ee33c4ac17281805095e9b984357f88 156 PIRSF PIRSF002122 2 156 2.7E-62 T 14-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 Thimo_2864 4ee33c4ac17281805095e9b984357f88 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 3.5E-67 T 14-10-2018 IPR023798 Ribosomal protein S7 domain Thimo_0794 f650f14ec0f8825e831fd6f5f32a554e 933 Pfam PF04865 Baseplate J-like protein 691 776 3.0E-6 T 14-10-2018 IPR006949 Baseplate protein J-like Thimo_0794 f650f14ec0f8825e831fd6f5f32a554e 933 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 522 888 5.3E-51 T 14-10-2018 IPR011749 Conserved hypothetical protein CHP02243 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:2.60.260.20 253 358 3.3E-29 T 14-10-2018 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF46565 1 110 1.15E-37 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:2.10.230.10 146 206 1.1E-37 T 14-10-2018 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 Pfam PF00684 DnaJ central domain 146 206 5.6E-14 T 14-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 371 42.275 T 14-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:2.60.260.20 116 248 1.1E-37 T 14-10-2018 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF57938 133 210 2.09E-22 T 14-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF49493 258 343 1.96E-22 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 SMART SM00271 4 62 1.3E-33 T 14-10-2018 IPR001623 DnaJ domain Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 348 6.2E-140 T 14-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 14-10-2018 IPR018253 DnaJ domain, conserved site Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 SUPERFAMILY SSF49493 113 266 4.45E-21 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 Gene3D G3DSA:1.10.287.110 1 115 2.0E-37 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 Pfam PF01556 DnaJ C terminal domain 120 332 5.6E-45 T 14-10-2018 IPR002939 Chaperone DnaJ, C-terminal Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 Pfam PF00226 DnaJ domain 5 67 8.9E-29 T 14-10-2018 IPR001623 DnaJ domain Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 PRINTS PR00625 DnaJ domain signature 25 40 7.3E-32 T 14-10-2018 IPR001623 DnaJ domain Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 PRINTS PR00625 DnaJ domain signature 42 62 7.3E-32 T 14-10-2018 IPR001623 DnaJ domain Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 PRINTS PR00625 DnaJ domain signature 7 25 7.3E-32 T 14-10-2018 IPR001623 DnaJ domain Thimo_2535 4d158ff138a8ffd4f1c2545a7f46a8be 377 PRINTS PR00625 DnaJ domain signature 62 81 7.3E-32 T 14-10-2018 IPR001623 DnaJ domain Thimo_0579 3c43c6e3d19d099000a1afe8feb7a588 203 Pfam PF06080 Protein of unknown function (DUF938) 3 195 5.5E-62 T 14-10-2018 IPR010342 Protein of unknown function DUF938 Thimo_0579 3c43c6e3d19d099000a1afe8feb7a588 203 Gene3D G3DSA:3.40.50.150 3 192 7.5E-24 T 14-10-2018 Thimo_0579 3c43c6e3d19d099000a1afe8feb7a588 203 SUPERFAMILY SSF53335 14 194 5.47E-29 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1634 e06cea9c17f13bffc7c50b977c7dbc1c 184 Gene3D G3DSA:1.20.120.1760 1 172 2.2E-9 T 14-10-2018 Thimo_1634 e06cea9c17f13bffc7c50b977c7dbc1c 184 Pfam PF01066 CDP-alcohol phosphatidyltransferase 6 69 1.4E-14 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Thimo_1634 e06cea9c17f13bffc7c50b977c7dbc1c 184 PIRSF PIRSF000847 2 183 5.1E-38 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 552 52.987 T 14-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 29 339 2.6E-110 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:3.40.50.620 29 249 1.9E-99 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 PRINTS PR00987 Glutamyl-tRNA synthetase signature 32 44 4.9E-10 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 PRINTS PR00987 Glutamyl-tRNA synthetase signature 61 74 4.9E-10 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 PRINTS PR00987 Glutamyl-tRNA synthetase signature 212 222 4.9E-10 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 PRINTS PR00987 Glutamyl-tRNA synthetase signature 46 57 4.9E-10 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 342 532 4.2E-57 T 14-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 SUPERFAMILY SSF52374 29 348 1.41E-97 T 14-10-2018 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 35 46 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:2.40.240.10 342 549 1.7E-78 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:2.40.240.10 350 467 1.7E-78 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 SUPERFAMILY SSF50715 342 551 1.26E-69 T 14-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 30 554 2.1E-232 T 14-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:3.90.800.10 102 211 1.9E-99 T 14-10-2018 Thimo_2081 7df301b86d6ab7088d94205ccdbd7490 561 Gene3D G3DSA:1.10.1160.10 263 341 6.1E-36 T 14-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 Thimo_2792 29c81f5b5051602d94a80dd957d85c19 490 Gene3D G3DSA:3.40.50.150 9 313 1.1E-87 T 14-10-2018 Thimo_2792 29c81f5b5051602d94a80dd957d85c19 490 Pfam PF01189 16S rRNA methyltransferase RsmB/F 105 311 2.1E-50 T 14-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 Thimo_2792 29c81f5b5051602d94a80dd957d85c19 490 SUPERFAMILY SSF53335 20 313 2.21E-66 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2792 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 87 101 1.4E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_2792 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 296 313 1.4E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_2792 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 116 126 1.4E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_2792 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 232 248 1.4E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_2792 29c81f5b5051602d94a80dd957d85c19 490 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 182 194 1.4E-27 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_2156 53a4b466ae016c96e9604040cb2a5646 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 317 1.9E-23 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Thimo_2156 53a4b466ae016c96e9604040cb2a5646 324 SUPERFAMILY SSF52540 6 254 5.08E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2156 53a4b466ae016c96e9604040cb2a5646 324 Pfam PF00005 ABC transporter 27 184 4.4E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2156 53a4b466ae016c96e9604040cb2a5646 324 Gene3D G3DSA:3.40.50.300 4 322 8.7E-91 T 14-10-2018 Thimo_2156 53a4b466ae016c96e9604040cb2a5646 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 298 2.0E-18 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Thimo_2156 53a4b466ae016c96e9604040cb2a5646 324 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2156 53a4b466ae016c96e9604040cb2a5646 324 SMART SM00382 35 242 6.8E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 SUPERFAMILY SSF88659 507 609 2.43E-26 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 570 596 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 401 414 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 373 598 4.0E-37 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 SUPERFAMILY SSF88659 450 523 1.07E-20 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF03979 Sigma-70 factor, region 1.1 4 80 2.1E-27 T 14-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 401 414 5.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 549 561 5.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 425 433 5.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 570 585 5.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 PRINTS PR00046 Major sigma-70 factor signature 585 596 5.6E-31 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Gene3D G3DSA:1.10.220.120 1 65 1.4E-27 T 14-10-2018 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 SUPERFAMILY SSF88946 115 444 4.26E-99 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 373 609 2.7E-120 T 14-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 5 610 44.969 T 14-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF04539 Sigma-70 region 3 456 532 9.4E-30 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF04545 Sigma-70, region 4 546 598 1.8E-18 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Gene3D G3DSA:1.10.10.10 527 611 6.7E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Gene3D G3DSA:1.10.10.10 450 524 2.0E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Gene3D G3DSA:1.10.601.10 113 446 1.2E-128 T 14-10-2018 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF04546 Sigma-70, non-essential region 139 346 1.3E-64 T 14-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF04542 Sigma-70 region 2 377 446 1.7E-21 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_0552 564d234d6a3ccc773efced9f9f7196f2 612 Pfam PF00140 Sigma-70 factor, region 1.2 98 129 3.6E-12 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_1928 118cc26147a13c76e0b659351aec1238 152 SMART SM00450 34 145 4.4E-8 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_1928 118cc26147a13c76e0b659351aec1238 152 SUPERFAMILY SSF52821 14 148 4.19E-22 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_1928 118cc26147a13c76e0b659351aec1238 152 Gene3D G3DSA:3.40.250.10 32 151 1.8E-25 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_1928 118cc26147a13c76e0b659351aec1238 152 Pfam PF00581 Rhodanese-like domain 36 131 3.3E-9 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_0223 b5f827b597d4147aa7787e38693168c0 670 Gene3D G3DSA:1.20.1270.30 70 243 1.3E-52 T 14-10-2018 IPR016101 CO dehydrogenase, alpha-bundle GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.7.4|KEGG: 00680+1.2.7.4|KEGG: 00720+1.2.7.4|MetaCyc: PWY-5372|MetaCyc: PWY-6780|MetaCyc: PWY-7784 Thimo_0223 b5f827b597d4147aa7787e38693168c0 670 Gene3D G3DSA:3.40.50.2030 244 417 1.6E-53 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_0223 b5f827b597d4147aa7787e38693168c0 670 TIGRFAM TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit 20 634 9.8E-150 T 14-10-2018 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 KEGG: 00633+1.2.7.4|KEGG: 00680+1.2.7.4|KEGG: 00720+1.2.7.4|MetaCyc: PWY-5372|MetaCyc: PWY-6780|MetaCyc: PWY-7784 Thimo_0223 b5f827b597d4147aa7787e38693168c0 670 SUPERFAMILY SSF56821 6 635 2.09E-166 T 14-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 Thimo_0223 b5f827b597d4147aa7787e38693168c0 670 Gene3D G3DSA:3.40.50.2030 420 632 2.7E-65 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_0223 b5f827b597d4147aa7787e38693168c0 670 Pfam PF03063 Prismane/CO dehydrogenase family 56 615 4.7E-126 T 14-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 Gene3D G3DSA:1.10.486.10 416 625 2.7E-153 T 14-10-2018 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 SUPERFAMILY SSF52980 787 1076 5.2E-62 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1085 18.827 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 Gene3D G3DSA:1.10.10.160 79 175 5.2E-82 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 SUPERFAMILY SSF52540 1 315 3.72E-93 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 Gene3D G3DSA:1.10.10.990 826 894 4.3E-11 T 14-10-2018 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 Gene3D G3DSA:3.40.50.10930 4 282 5.2E-82 T 14-10-2018 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 Gene3D G3DSA:3.40.50.300 303 761 2.7E-153 T 14-10-2018 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1040 8.4E-279 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 PIRSF PIRSF000980 1 1082 3.5E-299 T 14-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 759 4.8E-242 T 14-10-2018 Thimo_2317 5811ed6f9983e9d03f1978a7cb694448 1085 SUPERFAMILY SSF52540 325 766 4.78E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Gene3D G3DSA:2.40.33.10 71 169 2.0E-158 T 14-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Gene3D G3DSA:3.40.1380.20 336 469 2.0E-158 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 473 2.8E-156 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 SUPERFAMILY SSF52935 324 474 6.8E-39 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Pfam PF00224 Pyruvate kinase, barrel domain 3 338 8.0E-115 T 14-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 269 293 9.5E-57 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 60 76 9.5E-57 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 294 312 9.5E-57 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 217 243 9.5E-57 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 313 329 9.5E-57 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 187 201 9.5E-57 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 PRINTS PR01050 Pyruvate kinase family signature 244 268 9.5E-57 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Pfam PF02887 Pyruvate kinase, alpha/beta domain 357 471 8.6E-33 T 14-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 Gene3D G3DSA:3.20.20.60 3 335 2.0E-158 T 14-10-2018 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 SUPERFAMILY SSF51621 2 339 2.27E-89 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_2173 ccb63b192c6fea6d1bc09c1caf5f4f9b 482 SUPERFAMILY SSF50800 71 166 1.34E-23 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 Gene3D G3DSA:3.50.50.60 7 329 6.8E-92 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 SUPERFAMILY SSF55424 345 462 2.06E-27 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PIRSF PIRSF000350 1 462 5.3E-62 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 SUPERFAMILY SSF51905 6 322 3.43E-55 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 325 4.2E-56 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 Gene3D G3DSA:3.30.390.30 345 463 2.5E-29 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 Gene3D G3DSA:3.50.50.60 157 275 6.8E-92 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 456 2.7E-25 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 1.3E-27 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 1.3E-27 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 1.3E-27 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.3E-27 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 1.3E-27 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 3.9E-47 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.9E-47 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 3.9E-47 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 3.9E-47 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 3.9E-47 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 3.9E-47 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 3.9E-47 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 3.9E-47 T 14-10-2018 Thimo_2059 4474091c1ba368e9280c1f33957d4f87 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 3.9E-47 T 14-10-2018 Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 Pfam PF07729 FCD domain 90 216 5.8E-26 T 14-10-2018 IPR011711 GntR, C-terminal Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 6.7E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 6.7E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 SMART SM00895 90 217 7.2E-26 T 14-10-2018 IPR011711 GntR, C-terminal Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 SUPERFAMILY SSF46785 15 109 2.32E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 Gene3D G3DSA:1.10.10.10 15 81 2.2E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 3.1E-18 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 Gene3D G3DSA:1.20.120.530 83 224 1.1E-31 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 SUPERFAMILY SSF48008 87 222 3.66E-27 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Thimo_2680 7d3ef1f0edbe8325ffa78e2c6709d8bf 237 SMART SM00345 22 80 6.5E-18 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.520.10 20 432 3.0E-216 T 14-10-2018 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.520.10 433 723 5.9E-148 T 14-10-2018 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 Pfam PF00141 Peroxidase 406 698 3.5E-37 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 Pfam PF00141 Peroxidase 73 397 1.3E-50 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 SUPERFAMILY SSF48113 17 431 1.62E-150 T 14-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.420.10 578 699 5.9E-148 T 14-10-2018 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 11 723 0.0 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 67 92 7.9E-52 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 267 290 7.9E-52 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 478 504 7.9E-52 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 26 48 7.9E-52 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 52 65 7.9E-52 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 Hamap MF_01961 Catalase-peroxidase [katG]. 7 724 40.042 T 14-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 SUPERFAMILY SSF48113 432 723 1.25E-111 T 14-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 Gene3D G3DSA:1.10.420.20 191 399 3.0E-216 T 14-10-2018 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 259 274 5.9E-18 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 150 167 5.9E-18 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 90 104 5.9E-18 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 318 333 5.9E-18 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 PRINTS PR00458 Haem peroxidase superfamily signature 168 180 5.9E-18 T 14-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 Thimo_3545 0c86a0f38e7eedbbb39774dd669d3c54 724 ProSitePatterns PS00436 Peroxidases active site signature. 90 101 - T 14-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 PRINTS PR01576 Peptide deformylase signature 33 62 2.5E-37 T 14-10-2018 IPR023635 Peptide deformylase Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 PRINTS PR01576 Peptide deformylase signature 89 100 2.5E-37 T 14-10-2018 IPR023635 Peptide deformylase Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 PRINTS PR01576 Peptide deformylase signature 101 119 2.5E-37 T 14-10-2018 IPR023635 Peptide deformylase Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 PRINTS PR01576 Peptide deformylase signature 120 149 2.5E-37 T 14-10-2018 IPR023635 Peptide deformylase Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 Gene3D G3DSA:3.90.45.10 1 167 1.4E-64 T 14-10-2018 IPR036821 Peptide deformylase superfamily Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 SUPERFAMILY SSF56420 3 164 3.01E-64 T 14-10-2018 IPR036821 Peptide deformylase superfamily Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 160 8.0E-58 T 14-10-2018 IPR023635 Peptide deformylase Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 PIRSF PIRSF004749 1 173 3.3E-55 T 14-10-2018 IPR023635 Peptide deformylase Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.605 T 14-10-2018 IPR023635 Peptide deformylase Thimo_1247 ffd7d1280342181528158c4e4613aa15 178 Pfam PF01327 Polypeptide deformylase 5 152 2.5E-51 T 14-10-2018 IPR023635 Peptide deformylase Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 585 596 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 244 255 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.30.70.20 575 637 2.5E-12 T 14-10-2018 Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 SUPERFAMILY SSF54862 397 636 1.4E-20 T 14-10-2018 Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 247 7.0E-9 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.40.50.720 140 232 3.9E-12 T 14-10-2018 Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 SUPERFAMILY SSF51905 141 564 3.88E-31 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 Pfam PF13187 4Fe-4S dicluster domain 584 629 4.5E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 Gene3D G3DSA:3.30.70.20 235 315 1.4E-7 T 14-10-2018 Thimo_0253 5f25080f57cb65ab2c0c62385429d145 649 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 436 559 1.4E-6 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 423 454 690.0 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 194 222 6.3E-5 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 257 285 1.6E-4 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 287 315 0.11 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 355 386 160.0 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 498 529 0.0044 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 468 496 0.5 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 161 192 13.0 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 388 419 9.0E-4 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SMART SM00567 E-Z type HEAT repeats 224 255 9.1E-6 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SUPERFAMILY SSF52200 5 108 9.55E-15 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Gene3D G3DSA:1.25.10.110 462 544 8.1E-19 T 14-10-2018 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Gene3D G3DSA:1.25.10.110 150 238 2.8E-20 T 14-10-2018 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Pfam PF02985 HEAT repeat 182 207 3.1E-4 T 14-10-2018 IPR000357 HEAT repeat GO:0005515 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Pfam PF03130 PBS lyase HEAT-like repeat 289 311 0.012 T 14-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Gene3D G3DSA:3.40.50.10140 2 124 6.6E-17 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Gene3D G3DSA:1.25.10.10 240 346 2.0E-28 T 14-10-2018 IPR011989 Armadillo-like helical Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Gene3D G3DSA:1.25.10.10 347 461 7.6E-17 T 14-10-2018 IPR011989 Armadillo-like helical Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 SUPERFAMILY SSF48371 152 544 1.37E-48 T 14-10-2018 IPR016024 Armadillo-type fold Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Pfam PF13646 HEAT repeats 470 541 6.9E-12 T 14-10-2018 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Pfam PF13646 HEAT repeats 212 285 2.3E-15 T 14-10-2018 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Pfam PF13646 HEAT repeats 354 419 5.1E-8 T 14-10-2018 Thimo_3765 27eb3c75a0f29c2db89015fa9cdcc56b 549 Pfam PF13676 TIR domain 7 108 4.4E-16 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_0089 dc8721730c5c32b76abf52ff47e4be7b 361 Pfam PF01761 3-dehydroquinate synthase 66 324 8.7E-109 T 14-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Thimo_0089 dc8721730c5c32b76abf52ff47e4be7b 361 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 355 71.939 T 14-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Thimo_0089 dc8721730c5c32b76abf52ff47e4be7b 361 SUPERFAMILY SSF56796 5 356 3.66E-115 T 14-10-2018 Thimo_0089 dc8721730c5c32b76abf52ff47e4be7b 361 Gene3D G3DSA:3.40.50.1970 1 171 1.5E-66 T 14-10-2018 Thimo_0089 dc8721730c5c32b76abf52ff47e4be7b 361 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 16 349 5.3E-116 T 14-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Thimo_0089 dc8721730c5c32b76abf52ff47e4be7b 361 Gene3D G3DSA:1.20.1090.10 172 358 1.1E-65 T 14-10-2018 Thimo_0089 dc8721730c5c32b76abf52ff47e4be7b 361 PIRSF PIRSF001455 4 358 5.5E-108 T 14-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Thimo_3046 7d7ea338ae1f7ce91500acde193f55f6 162 Gene3D G3DSA:3.90.79.10 15 158 8.7E-31 T 14-10-2018 Thimo_3046 7d7ea338ae1f7ce91500acde193f55f6 162 ProSitePatterns PS00893 Nudix box signature. 52 73 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Thimo_3046 7d7ea338ae1f7ce91500acde193f55f6 162 SUPERFAMILY SSF55811 19 158 1.03E-22 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_3046 7d7ea338ae1f7ce91500acde193f55f6 162 PRINTS PR01404 DATP pyrophosphohydrolase signature 18 35 2.1E-7 T 14-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 Thimo_3046 7d7ea338ae1f7ce91500acde193f55f6 162 PRINTS PR01404 DATP pyrophosphohydrolase signature 82 101 2.1E-7 T 14-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 Thimo_3046 7d7ea338ae1f7ce91500acde193f55f6 162 PRINTS PR01404 DATP pyrophosphohydrolase signature 139 152 2.1E-7 T 14-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 Thimo_3046 7d7ea338ae1f7ce91500acde193f55f6 162 Pfam PF00293 NUDIX domain 20 139 6.0E-15 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 Pfam PF00005 ABC transporter 355 503 6.8E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 SUPERFAMILY SSF90123 6 325 5.36E-47 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 Gene3D G3DSA:3.40.50.300 323 574 1.2E-82 T 14-10-2018 Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 Pfam PF00664 ABC transporter transmembrane region 23 288 5.4E-14 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 SUPERFAMILY SSF52540 330 572 4.65E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 SMART SM00382 364 550 8.2E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 5 533 7.9E-144 T 14-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 Gene3D G3DSA:1.20.1560.10 4 320 1.9E-40 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_0359 35af6418b81f7d0d589eaf1bbd6c95f1 579 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1229 590b6245014d40c610af317c283d2e4f 373 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 368 2.9E-67 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1229 590b6245014d40c610af317c283d2e4f 373 Gene3D G3DSA:1.10.287.470 101 166 1.2E-60 T 14-10-2018 Thimo_1229 590b6245014d40c610af317c283d2e4f 373 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 267 9.7E-22 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_1229 590b6245014d40c610af317c283d2e4f 373 SUPERFAMILY SSF111369 57 288 9.94E-23 T 14-10-2018 Thimo_1229 590b6245014d40c610af317c283d2e4f 373 Gene3D G3DSA:2.40.30.170 58 290 1.2E-60 T 14-10-2018 Thimo_1229 590b6245014d40c610af317c283d2e4f 373 Gene3D G3DSA:2.40.420.20 291 366 1.2E-60 T 14-10-2018 Thimo_1229 590b6245014d40c610af317c283d2e4f 373 Gene3D G3DSA:2.40.50.100 67 213 1.2E-60 T 14-10-2018 Thimo_2011 6158bf92f314cd2d69f8ee8d924b5383 579 SUPERFAMILY SSF52540 6 265 2.02E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2011 6158bf92f314cd2d69f8ee8d924b5383 579 Gene3D G3DSA:1.10.101.10 493 563 2.9E-39 T 14-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Thimo_2011 6158bf92f314cd2d69f8ee8d924b5383 579 Pfam PF13401 AAA domain 42 171 1.0E-21 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2011 6158bf92f314cd2d69f8ee8d924b5383 579 SMART SM00382 42 194 4.9E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2011 6158bf92f314cd2d69f8ee8d924b5383 579 SUPERFAMILY SSF47090 492 568 1.52E-13 T 14-10-2018 IPR036365 PGBD-like superfamily Thimo_2011 6158bf92f314cd2d69f8ee8d924b5383 579 Gene3D G3DSA:3.90.70.10 388 492 2.9E-39 T 14-10-2018 Thimo_2011 6158bf92f314cd2d69f8ee8d924b5383 579 Pfam PF01471 Putative peptidoglycan binding domain 506 561 7.3E-9 T 14-10-2018 IPR002477 Peptidoglycan binding-like Thimo_2011 6158bf92f314cd2d69f8ee8d924b5383 579 Gene3D G3DSA:3.40.50.300 25 188 1.2E-15 T 14-10-2018 Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 Pfam PF02779 Transketolase, pyrimidine binding domain 360 532 8.5E-46 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 ProSitePatterns PS00802 Transketolase signature 2. 474 490 - T 14-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 SUPERFAMILY SSF52518 354 534 4.87E-68 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 667 7.5E-303 T 14-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 Gene3D G3DSA:3.40.50.920 546 668 2.1E-41 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 SMART SM00861 361 532 4.7E-67 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 Gene3D G3DSA:3.40.50.970 2 332 9.0E-132 T 14-10-2018 Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 SUPERFAMILY SSF52518 5 336 5.09E-121 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 Pfam PF02780 Transketolase, C-terminal domain 547 660 6.2E-14 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 SUPERFAMILY SSF52922 540 668 6.14E-42 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 Gene3D G3DSA:3.40.50.970 333 544 1.7E-81 T 14-10-2018 Thimo_2176 ca32e3103d2e8e95e4ad252a59b11ece 668 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 340 5.8E-163 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 Gene3D G3DSA:1.10.8.60 327 401 1.8E-29 T 14-10-2018 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 193 325 2.3E-44 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 Pfam PF06480 FtsH Extracellular 8 92 3.0E-9 T 14-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 SMART SM00382 189 328 1.6E-26 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 SUPERFAMILY SSF140990 407 607 4.84E-75 T 14-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 Gene3D G3DSA:1.20.58.760 402 604 7.8E-75 T 14-10-2018 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 Gene3D G3DSA:2.40.50.920 31 103 1.6E-12 T 14-10-2018 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 SUPERFAMILY SSF52540 152 396 2.32E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 ProSitePatterns PS00674 AAA-protein family signature. 296 314 - T 14-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 613 37.734 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 Pfam PF01434 Peptidase family M41 386 597 3.1E-83 T 14-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 598 5.3E-238 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Thimo_3044 e882a7ce38d3d265c28d23d8c65d7802 645 Gene3D G3DSA:3.40.50.300 147 325 8.6E-70 T 14-10-2018 Thimo_1966 8c049e90b86aca9ec7f895e9e63bab9c 158 PRINTS PR01438 Universal stress protein signature 6 24 4.9E-10 T 14-10-2018 IPR006015 Universal stress protein A Thimo_1966 8c049e90b86aca9ec7f895e9e63bab9c 158 PRINTS PR01438 Universal stress protein signature 130 152 4.9E-10 T 14-10-2018 IPR006015 Universal stress protein A Thimo_1966 8c049e90b86aca9ec7f895e9e63bab9c 158 PRINTS PR01438 Universal stress protein signature 112 124 4.9E-10 T 14-10-2018 IPR006015 Universal stress protein A Thimo_1966 8c049e90b86aca9ec7f895e9e63bab9c 158 PIRSF PIRSF006276 1 155 1.9E-25 T 14-10-2018 IPR006015 Universal stress protein A Thimo_1966 8c049e90b86aca9ec7f895e9e63bab9c 158 Pfam PF00582 Universal stress protein family 6 152 4.3E-22 T 14-10-2018 IPR006016 UspA Thimo_1966 8c049e90b86aca9ec7f895e9e63bab9c 158 Gene3D G3DSA:3.40.50.620 2 153 5.2E-29 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1966 8c049e90b86aca9ec7f895e9e63bab9c 158 SUPERFAMILY SSF52402 6 152 3.43E-24 T 14-10-2018 Thimo_3515 03c10c11ab7d0242307bcce97bb1e0c8 506 Pfam PF08323 Starch synthase catalytic domain 16 253 4.0E-74 T 14-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Thimo_3515 03c10c11ab7d0242307bcce97bb1e0c8 506 SUPERFAMILY SSF53756 10 497 3.49E-123 T 14-10-2018 Thimo_3515 03c10c11ab7d0242307bcce97bb1e0c8 506 Hamap MF_00484 Glycogen synthase [glgA]. 15 495 43.945 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Thimo_3515 03c10c11ab7d0242307bcce97bb1e0c8 506 Gene3D G3DSA:3.40.50.2000 17 492 9.5E-179 T 14-10-2018 Thimo_3515 03c10c11ab7d0242307bcce97bb1e0c8 506 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 16 494 1.6E-167 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Thimo_3515 03c10c11ab7d0242307bcce97bb1e0c8 506 Gene3D G3DSA:3.40.50.2000 266 477 9.5E-179 T 14-10-2018 Thimo_3515 03c10c11ab7d0242307bcce97bb1e0c8 506 Pfam PF00534 Glycosyl transferases group 1 302 462 1.4E-16 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 205 220 2.4E-11 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 189 205 2.4E-11 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 Gene3D G3DSA:1.10.10.10 161 243 1.0E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 ProSitePatterns PS00042 Crp-type HTH domain signature. 191 214 - T 14-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 Gene3D G3DSA:2.60.120.10 39 160 1.4E-41 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 SUPERFAMILY SSF46785 161 239 2.37E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 SMART SM00100 26 147 7.7E-19 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 Pfam PF13545 Crp-like helix-turn-helix domain 164 238 2.0E-17 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 SUPERFAMILY SSF51206 19 158 1.06E-27 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 Pfam PF00027 Cyclic nucleotide-binding domain 46 128 5.0E-15 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_1319 a107fa6764e162f586c5e8b645fa99a0 253 SMART SM00419 183 231 2.3E-13 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_0001 b4cff046fdeaf23a152e5e64f8de84d9 75 SMART SM01234 1 68 2.0E-43 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Thimo_0001 b4cff046fdeaf23a152e5e64f8de84d9 75 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 7 75 6.1E-28 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Thimo_0001 b4cff046fdeaf23a152e5e64f8de84d9 75 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 6.0E-17 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Thimo_0001 b4cff046fdeaf23a152e5e64f8de84d9 75 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 24.437 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Thimo_0001 b4cff046fdeaf23a152e5e64f8de84d9 75 Pfam PF01809 Haemolytic domain 2 68 8.0E-30 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 Pfam PF14561 Tetratricopeptide repeat 200 287 5.7E-28 T 14-10-2018 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 Gene3D G3DSA:3.40.30.10 6 116 4.2E-33 T 14-10-2018 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 SUPERFAMILY SSF48452 118 249 1.22E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 Gene3D G3DSA:1.25.40.10 200 287 1.2E-28 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 Pfam PF00085 Thioredoxin 8 111 3.0E-27 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 Pfam PF14559 Tetratricopeptide repeat 126 192 6.2E-9 T 14-10-2018 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 TIGRFAM TIGR01068 thioredoxin: thioredoxin 13 111 2.9E-30 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 Gene3D G3DSA:1.25.40.10 120 198 2.4E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 SUPERFAMILY SSF52833 5 113 1.02E-36 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 PRINTS PR00421 Thioredoxin family signature 76 87 5.7E-7 T 14-10-2018 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 PRINTS PR00421 Thioredoxin family signature 36 45 5.7E-7 T 14-10-2018 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 PRINTS PR00421 Thioredoxin family signature 28 36 5.7E-7 T 14-10-2018 Thimo_2345 6f62666f26378b71d86f8d3c717e7436 287 ProSitePatterns PS00194 Thioredoxin family active site. 29 47 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Thimo_1916 ee1aaff7d99a8519562c4f6e881a5066 830 Gene3D G3DSA:3.40.50.2000 39 825 0.0 T 14-10-2018 Thimo_1916 ee1aaff7d99a8519562c4f6e881a5066 830 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 668 680 - T 14-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Thimo_1916 ee1aaff7d99a8519562c4f6e881a5066 830 SUPERFAMILY SSF53756 18 828 0.0 T 14-10-2018 Thimo_1916 ee1aaff7d99a8519562c4f6e881a5066 830 PIRSF PIRSF000460 11 830 3.7E-231 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Thimo_1916 ee1aaff7d99a8519562c4f6e881a5066 830 Pfam PF00343 Carbohydrate phosphorylase 113 823 0.0 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Thimo_1916 ee1aaff7d99a8519562c4f6e881a5066 830 Gene3D G3DSA:3.40.50.2000 481 808 0.0 T 14-10-2018 Thimo_1916 ee1aaff7d99a8519562c4f6e881a5066 830 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 23 823 0.0 T 14-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 SUPERFAMILY SSF51735 4 246 1.17E-83 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.0E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.0E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.0E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 Gene3D G3DSA:3.40.50.720 1 247 4.0E-84 T 14-10-2018 Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 1.0E-5 T 14-10-2018 Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.5E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.5E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.5E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.5E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.5E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.5E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 244 5.2E-98 T 14-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Thimo_2380 dde5a2018c1e352783d041f99ddf3413 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 1.9E-63 T 14-10-2018 Thimo_2698 9f6f36836d1c89d26f3dda67a8232878 658 Pfam PF01841 Transglutaminase-like superfamily 356 471 3.2E-21 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_2698 9f6f36836d1c89d26f3dda67a8232878 658 Pfam PF13559 Domain of unknown function (DUF4129) 584 637 2.8E-7 T 14-10-2018 IPR025403 Domain of unknown function DUF4129 Thimo_2698 9f6f36836d1c89d26f3dda67a8232878 658 SMART SM00460 402 473 1.0E-21 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_2698 9f6f36836d1c89d26f3dda67a8232878 658 Pfam PF11992 Domain of unknown function (DUF3488) 19 327 3.5E-91 T 14-10-2018 IPR021878 Protein of unknown function DUF3488 Thimo_2698 9f6f36836d1c89d26f3dda67a8232878 658 SUPERFAMILY SSF54001 277 603 1.26E-58 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Thimo_2698 9f6f36836d1c89d26f3dda67a8232878 658 Gene3D G3DSA:3.10.620.30 338 485 4.3E-19 T 14-10-2018 Thimo_3480 a683460fb1747ccb57701cef368d94e0 392 Pfam PF13437 HlyD family secretion protein 192 301 5.6E-12 T 14-10-2018 Thimo_3480 a683460fb1747ccb57701cef368d94e0 392 Gene3D G3DSA:1.10.287.470 112 188 5.0E-41 T 14-10-2018 Thimo_3480 a683460fb1747ccb57701cef368d94e0 392 Gene3D G3DSA:2.40.30.170 68 314 5.0E-41 T 14-10-2018 Thimo_3480 a683460fb1747ccb57701cef368d94e0 392 Gene3D G3DSA:2.40.50.100 75 222 5.0E-41 T 14-10-2018 Thimo_3480 a683460fb1747ccb57701cef368d94e0 392 Gene3D G3DSA:2.40.420.20 315 338 5.0E-41 T 14-10-2018 Thimo_3480 a683460fb1747ccb57701cef368d94e0 392 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 51 336 9.9E-39 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_3480 a683460fb1747ccb57701cef368d94e0 392 SUPERFAMILY SSF111369 68 308 3.4E-20 T 14-10-2018 Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.8E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.8E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 1.8E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 236 1.7E-65 T 14-10-2018 Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 239 2.7E-106 T 14-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 4.3E-6 T 14-10-2018 Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 4.1E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 4.1E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 221 4.1E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.1E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 4.1E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 4.1E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 SUPERFAMILY SSF51735 3 239 1.77E-83 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2299 7d749a15d721b4b61269906de8b953cd 240 Gene3D G3DSA:3.40.50.720 1 239 1.5E-80 T 14-10-2018 Thimo_2752 6169fa798c259236106f98757ec2f5b3 201 Pfam PF05494 MlaC protein 31 192 7.1E-58 T 14-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Thimo_2752 6169fa798c259236106f98757ec2f5b3 201 PIRSF PIRSF004649 1 201 1.5E-58 T 14-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Thimo_2752 6169fa798c259236106f98757ec2f5b3 201 Gene3D G3DSA:3.10.450.710 23 198 5.3E-58 T 14-10-2018 Thimo_0642 7f36e135e8e7c87b085003baf4c2c351 336 Pfam PF07963 Prokaryotic N-terminal methylation motif 19 44 2.9E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0642 7f36e135e8e7c87b085003baf4c2c351 336 Gene3D G3DSA:3.30.700.10 25 179 4.0E-9 T 14-10-2018 Thimo_0642 7f36e135e8e7c87b085003baf4c2c351 336 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 22 44 1.6E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0642 7f36e135e8e7c87b085003baf4c2c351 336 SUPERFAMILY SSF54523 25 106 8.63E-11 T 14-10-2018 Thimo_0642 7f36e135e8e7c87b085003baf4c2c351 336 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 23 43 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_1861 91ae314b095d875ac71366bc815417f8 175 Gene3D G3DSA:3.40.50.880 4 174 6.4E-48 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1861 91ae314b095d875ac71366bc815417f8 175 Pfam PF01965 DJ-1/PfpI family 11 169 1.1E-45 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Thimo_1861 91ae314b095d875ac71366bc815417f8 175 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 12 171 4.1E-46 T 14-10-2018 IPR006286 Deglycase PfpI Thimo_1861 91ae314b095d875ac71366bc815417f8 175 SUPERFAMILY SSF52317 7 172 4.09E-44 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 Gene3D G3DSA:3.40.50.1220 213 339 7.4E-52 T 14-10-2018 Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 SUPERFAMILY SSF52402 8 194 5.93E-51 T 14-10-2018 Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 SUPERFAMILY SSF52467 214 332 3.93E-45 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 214 297 1.7E-33 T 14-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 PIRSF PIRSF000089 4 339 1.3E-104 T 14-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 278 304 - T 14-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 Pfam PF01012 Electron transfer flavoprotein domain 8 179 2.0E-43 T 14-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 Gene3D G3DSA:3.40.50.620 4 212 5.7E-70 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0439 654908edad8edbf8b60b49e7624e7f28 339 SMART SM00893 8 205 1.1E-45 T 14-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Thimo_1419 94fba75dc594962a151eb25bd0276d59 354 Gene3D G3DSA:3.40.50.2000 171 338 3.1E-28 T 14-10-2018 Thimo_1419 94fba75dc594962a151eb25bd0276d59 354 SUPERFAMILY SSF53756 65 349 2.51E-34 T 14-10-2018 Thimo_1419 94fba75dc594962a151eb25bd0276d59 354 Pfam PF13692 Glycosyl transferases group 1 211 317 7.0E-15 T 14-10-2018 Thimo_1419 94fba75dc594962a151eb25bd0276d59 354 Gene3D G3DSA:3.40.50.2000 50 347 3.1E-28 T 14-10-2018 Thimo_3438 73a2c6ea3cc18f8321643d34e0031ca8 426 Gene3D G3DSA:3.20.20.80 2 335 8.8E-73 T 14-10-2018 Thimo_3438 73a2c6ea3cc18f8321643d34e0031ca8 426 SUPERFAMILY SSF51445 2 331 2.28E-61 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_3438 73a2c6ea3cc18f8321643d34e0031ca8 426 SMART SM00642 5 325 2.9E-6 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_3438 73a2c6ea3cc18f8321643d34e0031ca8 426 Pfam PF14701 Glycogen debranching enzyme, glucanotransferase domain 10 107 6.5E-18 T 14-10-2018 IPR032792 Glycogen debranching enzyme, glucanotransferase domain KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 SUPERFAMILY SSF46689 387 475 1.08E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 SMART SM00382 194 338 1.2E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 198 211 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 260 275 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 Gene3D G3DSA:1.10.10.60 426 477 6.8E-13 T 14-10-2018 Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 Pfam PF02954 Bacterial regulatory protein, Fis family 434 472 4.2E-7 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 Pfam PF00158 Sigma-54 interaction domain 174 340 3.4E-65 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 SUPERFAMILY SSF52540 174 416 2.99E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 Gene3D G3DSA:1.10.8.60 345 422 9.9E-18 T 14-10-2018 Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 387 396 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_3084 665406ad7f17feb502bc8e310b6e300b 478 Gene3D G3DSA:3.40.50.300 159 344 6.5E-64 T 14-10-2018 Thimo_3768 3018794b1da899e1555741093523ad5c 175 Pfam PF00929 Exonuclease 4 156 3.1E-20 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_3768 3018794b1da899e1555741093523ad5c 175 Gene3D G3DSA:3.30.420.10 1 171 1.8E-34 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_3768 3018794b1da899e1555741093523ad5c 175 SUPERFAMILY SSF53098 3 164 1.08E-35 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_3768 3018794b1da899e1555741093523ad5c 175 SMART SM00479 2 168 7.6E-23 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82866 296 498 4.58E-47 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.2090.10 717 805 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82693 565 665 8.11E-25 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.70.1430 567 664 0.0 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.70.1430 38 813 0.0 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.70.1440 665 861 0.0 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:1.20.1640.10 513 1018 0.0 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:1.20.1640.10 8 512 0.0 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82714 183 272 5.89E-21 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.5E-99 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1021 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82693 38 130 1.43E-22 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1023 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82693 135 329 1.09E-23 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82866 804 1022 3.14E-43 T 14-10-2018 Thimo_3144 8314ffacbe02db4b1e36dfb481668271 1045 SUPERFAMILY SSF82714 720 802 7.46E-18 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2702 045e6cbe19c3e525cef630760155cdda 350 Pfam PF03150 Di-haem cytochrome c peroxidase 56 205 9.5E-53 T 14-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 Thimo_2702 045e6cbe19c3e525cef630760155cdda 350 Gene3D G3DSA:1.10.760.10 52 331 3.5E-112 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2702 045e6cbe19c3e525cef630760155cdda 350 Gene3D G3DSA:1.10.760.10 192 329 3.5E-112 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2702 045e6cbe19c3e525cef630760155cdda 350 Pfam PF00034 Cytochrome c 214 326 6.2E-9 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2702 045e6cbe19c3e525cef630760155cdda 350 PIRSF PIRSF000294 3 350 2.3E-148 T 14-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 Thimo_2702 045e6cbe19c3e525cef630760155cdda 350 SUPERFAMILY SSF46626 192 347 3.82E-40 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2702 045e6cbe19c3e525cef630760155cdda 350 SUPERFAMILY SSF46626 40 193 6.73E-54 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1723 fd87b37c1580991b2e68a3c73349acdc 456 SUPERFAMILY SSF47384 229 297 1.16E-6 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_1723 fd87b37c1580991b2e68a3c73349acdc 456 SUPERFAMILY SSF55874 311 453 4.45E-25 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1723 fd87b37c1580991b2e68a3c73349acdc 456 Gene3D G3DSA:1.10.287.130 198 309 3.8E-10 T 14-10-2018 Thimo_1723 fd87b37c1580991b2e68a3c73349acdc 456 Gene3D G3DSA:3.30.565.10 310 456 5.3E-25 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1723 fd87b37c1580991b2e68a3c73349acdc 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 454 4.2E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1723 fd87b37c1580991b2e68a3c73349acdc 456 SMART SM00387 351 456 5.4E-24 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1723 fd87b37c1580991b2e68a3c73349acdc 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 5.0E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1723 fd87b37c1580991b2e68a3c73349acdc 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 5.0E-9 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 SUPERFAMILY SSF56059 107 300 3.54E-51 T 14-10-2018 Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 Gene3D G3DSA:3.30.470.20 180 375 7.3E-76 T 14-10-2018 Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 10 362 40.132 T 14-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 11 367 5.9E-125 T 14-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 Gene3D G3DSA:3.40.50.20 1 111 7.3E-38 T 14-10-2018 Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 Pfam PF02222 ATP-grasp domain 116 281 2.8E-46 T 14-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 Gene3D G3DSA:3.30.1490.20 112 179 1.3E-14 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 SUPERFAMILY SSF51246 306 378 4.16E-18 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Thimo_0692 c13e03d33db35cf4cfd187230b8e48d4 384 SUPERFAMILY SSF52440 9 103 1.73E-28 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 Pfam PF00990 Diguanylate cyclase, GGDEF domain 392 548 5.1E-47 T 14-10-2018 IPR000160 GGDEF domain Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 SUPERFAMILY SSF55073 397 553 1.1E-47 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 Gene3D G3DSA:3.30.70.270 378 552 1.1E-55 T 14-10-2018 Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 Gene3D G3DSA:3.20.20.450 553 809 9.3E-87 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 SMART SM00052 565 806 9.3E-80 T 14-10-2018 IPR001633 EAL domain Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 SUPERFAMILY SSF141868 571 810 5.36E-78 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 Pfam PF00563 EAL domain 571 801 1.7E-68 T 14-10-2018 IPR001633 EAL domain Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 390 552 1.1E-44 T 14-10-2018 IPR000160 GGDEF domain Thimo_1143 9a9b946dadd0dd528d4e7aab1a9bc786 813 SMART SM00267 381 553 4.1E-60 T 14-10-2018 IPR000160 GGDEF domain Thimo_3609 c265520a67ec66dd3c753071cedf21cf 249 Gene3D G3DSA:3.30.70.980 130 205 6.0E-59 T 14-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_3609 c265520a67ec66dd3c753071cedf21cf 249 Gene3D G3DSA:1.10.10.200 1 81 3.4E-34 T 14-10-2018 IPR017856 Integrase-like, N-terminal Thimo_3609 c265520a67ec66dd3c753071cedf21cf 249 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 4.7E-101 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_3609 c265520a67ec66dd3c753071cedf21cf 249 SUPERFAMILY SSF75625 3 246 8.37E-99 T 14-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_3609 c265520a67ec66dd3c753071cedf21cf 249 Pfam PF01709 Transcriptional regulator 5 237 7.5E-98 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_3609 c265520a67ec66dd3c753071cedf21cf 249 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 37.723 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_3609 c265520a67ec66dd3c753071cedf21cf 249 Gene3D G3DSA:3.30.70.980 86 236 6.0E-59 T 14-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 219 427 4.8E-52 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:1.10.8.210 150 212 7.2E-6 T 14-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 SUPERFAMILY SSF51735 1 112 1.09E-24 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 297 330 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:3.40.50.720 1 112 1.1E-35 T 14-10-2018 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 217 452 2.6E-95 T 14-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Pfam PF13241 Putative NAD(P)-binding 6 115 6.2E-31 T 14-10-2018 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 SUPERFAMILY SSF75615 114 208 1.83E-25 T 14-10-2018 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 4.5E-20 T 14-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 3.5E-70 T 14-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:3.30.950.10 333 460 4.3E-47 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Hamap MF_01646 Siroheme synthase [cysG]. 1 461 52.573 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 PIRSF PIRSF036426 1 467 3.9E-198 T 14-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:3.30.160.110 113 148 7.2E-17 T 14-10-2018 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 SUPERFAMILY SSF53790 215 458 7.07E-83 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Thimo_2640 f86b4aba8bd2e9d4ea4ae028898aaf3f 476 Gene3D G3DSA:3.40.1010.10 216 332 2.7E-45 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Thimo_2559 649b893adfdfd4090c2c9b884a73c2ec 256 PRINTS PR00625 DnaJ domain signature 207 225 6.8E-5 T 14-10-2018 IPR001623 DnaJ domain Thimo_2559 649b893adfdfd4090c2c9b884a73c2ec 256 PRINTS PR00625 DnaJ domain signature 225 240 6.8E-5 T 14-10-2018 IPR001623 DnaJ domain Thimo_2559 649b893adfdfd4090c2c9b884a73c2ec 256 SMART SM00271 204 256 1.4E-6 T 14-10-2018 IPR001623 DnaJ domain Thimo_2559 649b893adfdfd4090c2c9b884a73c2ec 256 Gene3D G3DSA:1.10.287.110 196 256 3.0E-22 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Thimo_2559 649b893adfdfd4090c2c9b884a73c2ec 256 Pfam PF00226 DnaJ domain 208 239 2.4E-7 T 14-10-2018 IPR001623 DnaJ domain Thimo_2559 649b893adfdfd4090c2c9b884a73c2ec 256 SUPERFAMILY SSF46565 200 255 9.16E-16 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Thimo_2830 749908a18346117154d96eb3e2bc1c80 515 Gene3D G3DSA:3.20.130.10 321 497 4.1E-55 T 14-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 Thimo_2830 749908a18346117154d96eb3e2bc1c80 515 Pfam PF05683 Fumarase C-terminus 296 498 6.6E-79 T 14-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Thimo_2830 749908a18346117154d96eb3e2bc1c80 515 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 19 291 3.1E-63 T 14-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Thimo_2830 749908a18346117154d96eb3e2bc1c80 515 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 333 496 1.1E-43 T 14-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Thimo_2830 749908a18346117154d96eb3e2bc1c80 515 SUPERFAMILY SSF117457 325 496 1.09E-58 T 14-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 Thimo_2830 749908a18346117154d96eb3e2bc1c80 515 PIRSF PIRSF001394 7 514 6.9E-206 T 14-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 Thimo_2830 749908a18346117154d96eb3e2bc1c80 515 Pfam PF05681 Fumarate hydratase (Fumerase) 19 292 1.3E-98 T 14-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Thimo_0232 f7cf067a81e0bacbb58b3ad52b5ccaea 293 SMART SM00900 163 282 6.9E-14 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Thimo_0232 f7cf067a81e0bacbb58b3ad52b5ccaea 293 Pfam PF04205 FMN-binding domain 163 279 3.2E-13 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Thimo_0232 f7cf067a81e0bacbb58b3ad52b5ccaea 293 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 13 284 19.069 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 184 228 0.0074 T 14-10-2018 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 305 358 2.1E-4 T 14-10-2018 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 437 502 0.0098 T 14-10-2018 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 Pfam PF13432 Tetratricopeptide repeat 371 432 9.2E-7 T 14-10-2018 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SUPERFAMILY SSF48452 65 357 1.9E-20 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 Gene3D G3DSA:1.25.40.10 268 586 6.9E-50 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 Gene3D G3DSA:1.25.40.10 50 265 5.2E-17 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 Pfam PF14559 Tetratricopeptide repeat 512 572 6.6E-6 T 14-10-2018 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 Pfam PF14559 Tetratricopeptide repeat 240 300 8.7E-6 T 14-10-2018 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 467 501 25.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 364 397 190.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 399 432 9.6 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 60 93 300.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 298 331 360.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 502 535 0.48 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SMART SM00028 196 229 0.75 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3132 eab20422fe0be187d12e4b9319706de3 587 SUPERFAMILY SSF48452 400 569 6.5E-28 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2087 afba6061dd5d1ede79118a9bf3729537 582 SUPERFAMILY SSF81340 13 443 5.36E-91 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 Thimo_2087 afba6061dd5d1ede79118a9bf3729537 582 PRINTS PR00762 Chloride channel signature 125 144 8.5E-19 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Thimo_2087 afba6061dd5d1ede79118a9bf3729537 582 PRINTS PR00762 Chloride channel signature 390 409 8.5E-19 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Thimo_2087 afba6061dd5d1ede79118a9bf3729537 582 PRINTS PR00762 Chloride channel signature 372 388 8.5E-19 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Thimo_2087 afba6061dd5d1ede79118a9bf3729537 582 PRINTS PR00762 Chloride channel signature 176 195 8.5E-19 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Thimo_2087 afba6061dd5d1ede79118a9bf3729537 582 Gene3D G3DSA:1.10.3080.10 29 439 5.8E-88 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 Thimo_2087 afba6061dd5d1ede79118a9bf3729537 582 Pfam PF00654 Voltage gated chloride channel 83 422 4.8E-80 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 SMART SM00448 5 116 1.1E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 Gene3D G3DSA:3.40.50.2300 1 132 8.7E-46 T 14-10-2018 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 3.0E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 3.0E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 3.0E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 SMART SM00421 140 197 6.9E-21 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 Gene3D G3DSA:1.10.10.10 135 198 2.6E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 Pfam PF00072 Response regulator receiver domain 7 117 2.6E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 SUPERFAMILY SSF46894 135 196 1.28E-17 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 SUPERFAMILY SSF52172 4 154 3.56E-36 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2466 cc1777919d2b1ef13cc538a88c50f3ce 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 196 3.2E-19 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_0020 ec6fb4683814ec357831a93433aa4f5d 366 Gene3D G3DSA:3.40.50.2000 53 161 7.9E-18 T 14-10-2018 Thimo_0020 ec6fb4683814ec357831a93433aa4f5d 366 SUPERFAMILY SSF53756 5 304 4.76E-22 T 14-10-2018 Thimo_0020 ec6fb4683814ec357831a93433aa4f5d 366 Pfam PF13692 Glycosyl transferases group 1 183 295 3.2E-13 T 14-10-2018 Thimo_0020 ec6fb4683814ec357831a93433aa4f5d 366 Gene3D G3DSA:3.40.50.2000 162 296 7.9E-18 T 14-10-2018 Thimo_2585 afc499241f98b881eb46d71591724adc 516 Pfam PF02913 FAD linked oxidases, C-terminal domain 400 511 2.0E-10 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Thimo_2585 afc499241f98b881eb46d71591724adc 516 Gene3D G3DSA:3.40.462.10 242 472 1.2E-80 T 14-10-2018 IPR016170 Cytokinin dehydrogenase, C-terminal domain superfamily KEGG: 00908+1.5.99.12 Thimo_2585 afc499241f98b881eb46d71591724adc 516 SUPERFAMILY SSF55103 244 514 3.71E-52 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Thimo_2585 afc499241f98b881eb46d71591724adc 516 Pfam PF01565 FAD binding domain 57 197 2.4E-28 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Thimo_2585 afc499241f98b881eb46d71591724adc 516 Gene3D G3DSA:1.10.45.10 473 516 6.1E-23 T 14-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Thimo_2585 afc499241f98b881eb46d71591724adc 516 SUPERFAMILY SSF56176 12 241 7.48E-59 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Thimo_2585 afc499241f98b881eb46d71591724adc 516 Gene3D G3DSA:3.30.43.10 2 113 2.9E-35 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Thimo_2585 afc499241f98b881eb46d71591724adc 516 Gene3D G3DSA:3.30.465.10 114 241 1.9E-57 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_2695 b743d8efc6926ea5cc47fca74919eb43 688 Pfam PF01464 Transglycosylase SLT domain 505 614 9.1E-30 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Thimo_2695 b743d8efc6926ea5cc47fca74919eb43 688 Gene3D G3DSA:1.10.1240.20 426 494 5.1E-6 T 14-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 Thimo_2695 b743d8efc6926ea5cc47fca74919eb43 688 SUPERFAMILY SSF48435 50 499 9.94E-116 T 14-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 Thimo_2695 b743d8efc6926ea5cc47fca74919eb43 688 SUPERFAMILY SSF53955 501 655 5.63E-48 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_2695 b743d8efc6926ea5cc47fca74919eb43 688 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 523 551 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Thimo_2695 b743d8efc6926ea5cc47fca74919eb43 688 Pfam PF14718 Soluble lytic murein transglycosylase L domain 430 494 7.1E-19 T 14-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 Thimo_2695 b743d8efc6926ea5cc47fca74919eb43 688 Gene3D G3DSA:1.25.20.10 48 410 2.9E-113 T 14-10-2018 Thimo_2695 b743d8efc6926ea5cc47fca74919eb43 688 Gene3D G3DSA:1.10.530.10 496 652 1.3E-49 T 14-10-2018 Thimo_1737 1206fbc3c95aa27d21f32431c0521fb3 182 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 29 168 7.5E-23 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Thimo_1737 1206fbc3c95aa27d21f32431c0521fb3 182 SMART SM00644 17 168 3.5E-41 T 14-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Thimo_1737 1206fbc3c95aa27d21f32431c0521fb3 182 SUPERFAMILY SSF55846 6 180 9.68E-64 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Thimo_1737 1206fbc3c95aa27d21f32431c0521fb3 182 Gene3D G3DSA:3.40.80.10 4 182 3.2E-54 T 14-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Thimo_0931 7c46f9d0d5778329f3dc3d43274d8842 196 Gene3D G3DSA:1.10.1760.20 1 183 1.3E-31 T 14-10-2018 Thimo_0931 7c46f9d0d5778329f3dc3d43274d8842 196 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 1 185 1.0E-42 T 14-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 Pfam PF13541 Subunit ChlI of Mg-chelatase 354 434 7.9E-7 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 SMART SM00382 95 248 1.9E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 SUPERFAMILY SSF52540 77 296 6.38E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 Gene3D G3DSA:3.30.230.10 330 458 3.9E-16 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 TIGRFAM TIGR00416 sms: DNA repair protein RadA 15 455 1.1E-187 T 14-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 Hamap MF_01498 DNA repair protein RadA [radA]. 29 456 43.591 T 14-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 18 42 6.3E-95 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 178 202 6.3E-95 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 128 145 6.3E-95 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 87 115 6.3E-95 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 252 278 6.3E-95 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 217 245 6.3E-95 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 PRINTS PR01874 DNA repair protein radA signature 326 349 6.3E-95 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 Gene3D G3DSA:3.40.50.300 72 290 2.1E-39 T 14-10-2018 Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 SUPERFAMILY SSF54211 259 457 1.18E-38 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1515 f939e2523cdc048b99ca7acde247c396 458 Pfam PF13481 AAA domain 85 226 3.2E-14 T 14-10-2018 Thimo_3006 81ad936acbfd8b21fe7fd1e00462f2e3 314 SUPERFAMILY SSF51735 123 265 1.95E-6 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3006 81ad936acbfd8b21fe7fd1e00462f2e3 314 Gene3D G3DSA:3.90.180.10 100 299 3.7E-16 T 14-10-2018 Thimo_3006 81ad936acbfd8b21fe7fd1e00462f2e3 314 TIGRFAM TIGR01202 bchC: chlorophyll synthesis pathway protein BchC 4 309 3.2E-133 T 14-10-2018 IPR005903 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase GO:0016491|GO:0030494|GO:0036354|GO:0055114 Thimo_3006 81ad936acbfd8b21fe7fd1e00462f2e3 314 Gene3D G3DSA:3.90.180.10 1 95 1.9E-13 T 14-10-2018 Thimo_3006 81ad936acbfd8b21fe7fd1e00462f2e3 314 SUPERFAMILY SSF50129 5 155 2.74E-25 T 14-10-2018 IPR011032 GroES-like superfamily Thimo_3006 81ad936acbfd8b21fe7fd1e00462f2e3 314 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 91 6.8E-5 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Thimo_3006 81ad936acbfd8b21fe7fd1e00462f2e3 314 Gene3D G3DSA:3.40.50.720 135 256 3.7E-16 T 14-10-2018 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 Gene3D G3DSA:3.40.50.300 1 219 2.2E-75 T 14-10-2018 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 TIGRFAM TIGR01351 adk: adenylate kinase 2 184 2.0E-70 T 14-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 Pfam PF05191 Adenylate kinase, active site lid 123 158 2.8E-16 T 14-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 14-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 Hamap MF_00235 Adenylate kinase [adk]. 1 217 49.928 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 81 97 7.1E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 4 17 7.1E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 32 46 7.1E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 173 187 7.1E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 PRINTS PR00094 Adenylate kinase signature 156 171 7.1E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 Pfam PF00406 Adenylate kinase 5 184 4.4E-55 T 14-10-2018 Thimo_0844 42b797b2986a48fc1f57a2c35d916b05 219 SUPERFAMILY SSF52540 1 214 3.15E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:1.10.10.2190 531 796 2.5E-33 T 14-10-2018 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF13676 TIR domain 1096 1195 1.7E-10 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52058 29 348 2.21E-46 T 14-10-2018 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF08477 Ras of Complex, Roc, domain of DAPkinase 544 670 1.8E-21 T 14-10-2018 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.80.10.10 196 340 4.5E-26 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.40.50.300 546 732 2.5E-33 T 14-10-2018 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.40.50.10140 1084 1210 4.2E-15 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.80.10.10 341 509 2.6E-35 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52058 295 519 4.48E-32 T 14-10-2018 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF12799 Leucine Rich repeats (2 copies) 118 159 3.5E-6 T 14-10-2018 IPR025875 Leucine rich repeat 4 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF12799 Leucine Rich repeats (2 copies) 382 423 3.3E-6 T 14-10-2018 IPR025875 Leucine rich repeat 4 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52540 542 727 6.98E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Gene3D G3DSA:3.80.10.10 4 193 1.5E-26 T 14-10-2018 IPR032675 Leucine-rich repeat domain superfamily Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 SMART SM00255 1093 1232 0.0015 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 SUPERFAMILY SSF52200 1093 1193 4.71E-13 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_1120 cb74f1f6387b15db837fff46c887cb11 1283 Pfam PF16095 C-terminal of Roc, COR, domain 758 955 6.3E-19 T 14-10-2018 IPR032171 C-terminal of Roc (COR) domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 Thimo_1480 25802f270e7efc2cb25d88742cfd4c54 160 SUPERFAMILY SSF89963 2 84 8.11E-31 T 14-10-2018 IPR036183 YajQ-like superfamily Thimo_1480 25802f270e7efc2cb25d88742cfd4c54 160 Gene3D G3DSA:3.30.70.990 9 94 6.0E-30 T 14-10-2018 IPR035570 UPF0234, N-terminal Thimo_1480 25802f270e7efc2cb25d88742cfd4c54 160 Pfam PF04461 Protein of unknown function (DUF520) 2 159 3.5E-63 T 14-10-2018 IPR007551 Protein of unknown function DUF520 Thimo_1480 25802f270e7efc2cb25d88742cfd4c54 160 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 160 28.315 T 14-10-2018 IPR007551 Protein of unknown function DUF520 Thimo_1480 25802f270e7efc2cb25d88742cfd4c54 160 SUPERFAMILY SSF89963 88 160 5.75E-28 T 14-10-2018 IPR036183 YajQ-like superfamily Thimo_1480 25802f270e7efc2cb25d88742cfd4c54 160 Gene3D G3DSA:3.30.70.860 95 160 3.1E-30 T 14-10-2018 IPR035571 UPF0234-like, C-terminal Thimo_3346 6c143a6bbe866c76ef4435891f104a9a 350 Pfam PF15616 TerY-C metal binding domain 219 350 4.6E-54 T 14-10-2018 IPR028274 TerY-C metal binding domain Thimo_3346 6c143a6bbe866c76ef4435891f104a9a 350 SUPERFAMILY SSF53300 5 180 2.37E-23 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_3346 6c143a6bbe866c76ef4435891f104a9a 350 SMART SM00327 3 177 3.8E-17 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_3346 6c143a6bbe866c76ef4435891f104a9a 350 Gene3D G3DSA:3.40.50.410 2 183 4.5E-20 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_3346 6c143a6bbe866c76ef4435891f104a9a 350 Pfam PF00092 von Willebrand factor type A domain 6 158 1.6E-12 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 SUPERFAMILY SSF56601 253 615 2.01E-98 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 SUPERFAMILY SSF56519 59 251 1.7E-50 T 14-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Gene3D G3DSA:3.40.710.10 253 623 1.9E-98 T 14-10-2018 Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 237 8.5E-45 T 14-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Gene3D G3DSA:3.90.1310.10 67 248 2.3E-47 T 14-10-2018 Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 6 616 51.354 T 14-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Pfam PF00905 Penicillin binding protein transpeptidase domain 270 608 1.1E-71 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 22 613 6.7E-231 T 14-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_2781 8c9bfdfb4579f28aa322a90e1ab2ce37 627 Gene3D G3DSA:3.30.1390.30 88 163 2.3E-47 T 14-10-2018 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 Pfam PF00512 His Kinase A (phospho-acceptor) domain 501 568 3.1E-7 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 PIRSF PIRSF037532 2 727 8.9E-207 T 14-10-2018 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 SMART SM00304 311 364 4.4E-10 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 702 1.6E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 673 683 1.6E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 655 669 1.6E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 SMART SM00387 612 723 2.0E-32 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 SUPERFAMILY SSF55785 368 490 2.86E-12 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 Pfam PF08448 PAS fold 386 491 3.9E-5 T 14-10-2018 IPR013656 PAS fold-4 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 SMART SM00388 500 572 3.3E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 612 720 1.5E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 Pfam PF00672 HAMP domain 312 359 5.8E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 SUPERFAMILY SSF55874 561 724 1.01E-34 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 Gene3D G3DSA:3.30.565.10 572 731 2.6E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 SUPERFAMILY SSF47384 496 569 3.34E-10 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 Gene3D G3DSA:3.30.450.20 369 490 1.4E-14 T 14-10-2018 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 Gene3D G3DSA:1.20.1480.50 282 368 7.5E-8 T 14-10-2018 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 Gene3D G3DSA:1.10.287.130 491 569 9.0E-11 T 14-10-2018 Thimo_1243 596533d5a2e4d89f45103c92955438f1 732 SUPERFAMILY SSF158472 313 361 4.32E-8 T 14-10-2018 Thimo_1714 b4f5872d13035e5b4b49fb558d9385c6 227 PIRSF PIRSF003107 2 222 5.8E-50 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Thimo_1714 b4f5872d13035e5b4b49fb558d9385c6 227 Gene3D G3DSA:1.20.58.220 1 118 3.0E-27 T 14-10-2018 IPR038078 PhoU-like domain superfamily Thimo_1714 b4f5872d13035e5b4b49fb558d9385c6 227 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 8 213 3.4E-51 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Thimo_1714 b4f5872d13035e5b4b49fb558d9385c6 227 Gene3D G3DSA:1.20.58.220 119 225 1.2E-24 T 14-10-2018 IPR038078 PhoU-like domain superfamily Thimo_1714 b4f5872d13035e5b4b49fb558d9385c6 227 SUPERFAMILY SSF109755 7 216 1.78E-47 T 14-10-2018 Thimo_1714 b4f5872d13035e5b4b49fb558d9385c6 227 Pfam PF01895 PhoU domain 21 108 3.4E-16 T 14-10-2018 IPR026022 PhoU domain Thimo_1714 b4f5872d13035e5b4b49fb558d9385c6 227 Pfam PF01895 PhoU domain 125 207 3.5E-15 T 14-10-2018 IPR026022 PhoU domain Thimo_1581 35270f06d9a79eefd64ff1a14fe0973b 240 SUPERFAMILY SSF54862 1 203 1.15E-64 T 14-10-2018 Thimo_1581 35270f06d9a79eefd64ff1a14fe0973b 240 Gene3D G3DSA:3.30.70.20 1 229 2.6E-63 T 14-10-2018 Thimo_1581 35270f06d9a79eefd64ff1a14fe0973b 240 Pfam PF12800 4Fe-4S binding domain 11 25 0.018 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1581 35270f06d9a79eefd64ff1a14fe0973b 240 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 106 117 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1581 35270f06d9a79eefd64ff1a14fe0973b 240 Pfam PF13247 4Fe-4S dicluster domain 66 167 2.4E-22 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0915 d0d28b3085071b982ab44dcae4b65a53 1167 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1150 2.9E-64 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Thimo_0915 d0d28b3085071b982ab44dcae4b65a53 1167 Gene3D G3DSA:3.40.50.300 1 270 2.1E-51 T 14-10-2018 Thimo_0915 d0d28b3085071b982ab44dcae4b65a53 1167 Gene3D G3DSA:3.40.50.300 943 1165 2.9E-46 T 14-10-2018 Thimo_0915 d0d28b3085071b982ab44dcae4b65a53 1167 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1157 0.0 T 14-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Thimo_0915 d0d28b3085071b982ab44dcae4b65a53 1167 SUPERFAMILY SSF52540 1 1158 1.4E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0915 d0d28b3085071b982ab44dcae4b65a53 1167 PIRSF PIRSF005719 1 1166 2.0E-262 T 14-10-2018 IPR024704 Structural maintenance of chromosomes protein Thimo_0915 d0d28b3085071b982ab44dcae4b65a53 1167 SUPERFAMILY SSF75553 472 665 1.14E-5 T 14-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 Thimo_0915 d0d28b3085071b982ab44dcae4b65a53 1167 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1159 22.75 T 14-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 Gene3D G3DSA:3.30.70.1450 139 231 1.2E-21 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 SUPERFAMILY SSF116726 390 436 4.45E-9 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 SUPERFAMILY SSF51735 232 375 5.59E-33 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 Gene3D G3DSA:3.40.50.720 2 138 7.8E-45 T 14-10-2018 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 SUPERFAMILY SSF116726 135 221 9.68E-11 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 Pfam PF02254 TrkA-N domain 3 107 5.4E-27 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 Pfam PF02254 TrkA-N domain 235 349 1.4E-24 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 Gene3D G3DSA:3.30.70.1450 366 457 2.2E-28 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 Pfam PF02080 TrkA-C domain 154 221 5.6E-10 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 Pfam PF02080 TrkA-C domain 389 440 1.1E-10 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 SUPERFAMILY SSF51735 1 151 1.97E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 Gene3D G3DSA:3.40.50.720 232 365 7.1E-38 T 14-10-2018 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 2.7E-26 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 2.7E-26 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.7E-26 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 2.7E-26 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Thimo_1241 a493bbf190508b44e8cee788e8d79237 457 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 2.7E-26 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Thimo_1925 7b7adc43df615537ef7b3d229bb9d0b4 171 Gene3D G3DSA:3.10.129.10 1 171 9.7E-65 T 14-10-2018 Thimo_1925 7b7adc43df615537ef7b3d229bb9d0b4 171 SUPERFAMILY SSF54637 5 165 1.79E-54 T 14-10-2018 IPR029069 HotDog domain superfamily Thimo_1925 7b7adc43df615537ef7b3d229bb9d0b4 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 1 171 50.58 T 14-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Thimo_1925 7b7adc43df615537ef7b3d229bb9d0b4 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 5 169 2.6E-90 T 14-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Thimo_1925 7b7adc43df615537ef7b3d229bb9d0b4 171 Pfam PF07977 FabA-like domain 28 158 2.3E-50 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Thimo_1177 4f2fd125aca8280ba920090b7423ab75 267 Pfam PF00218 Indole-3-glycerol phosphate synthase 8 263 1.1E-97 T 14-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Thimo_1177 4f2fd125aca8280ba920090b7423ab75 267 Gene3D G3DSA:3.20.20.70 1 267 2.6E-109 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1177 4f2fd125aca8280ba920090b7423ab75 267 SUPERFAMILY SSF51366 15 265 1.53E-88 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Thimo_1177 4f2fd125aca8280ba920090b7423ab75 267 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 59 77 - T 14-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 Thimo_1177 4f2fd125aca8280ba920090b7423ab75 267 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 6 265 37.24 T 14-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Thimo_1757 e63fcfce86eaf065c099a7cd49c9914d 313 Gene3D G3DSA:2.120.10.30 135 313 1.4E-33 T 14-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Thimo_1757 e63fcfce86eaf065c099a7cd49c9914d 313 SUPERFAMILY SSF69304 41 297 6.02E-32 T 14-10-2018 Thimo_1757 e63fcfce86eaf065c099a7cd49c9914d 313 Pfam PF07676 WD40-like Beta Propeller Repeat 160 180 0.028 T 14-10-2018 IPR011659 WD40-like Beta Propeller Thimo_1757 e63fcfce86eaf065c099a7cd49c9914d 313 Pfam PF07676 WD40-like Beta Propeller Repeat 249 285 7.2E-8 T 14-10-2018 IPR011659 WD40-like Beta Propeller Thimo_1757 e63fcfce86eaf065c099a7cd49c9914d 313 Pfam PF07676 WD40-like Beta Propeller Repeat 66 92 0.0012 T 14-10-2018 IPR011659 WD40-like Beta Propeller Thimo_1757 e63fcfce86eaf065c099a7cd49c9914d 313 Pfam PF07676 WD40-like Beta Propeller Repeat 209 240 0.011 T 14-10-2018 IPR011659 WD40-like Beta Propeller Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 20 436 2.5E-121 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 ProSitePatterns PS00104 EPSP synthase signature 1. 95 109 - T 14-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 Gene3D G3DSA:3.65.10.10 28 237 6.6E-153 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 SUPERFAMILY SSF55205 11 437 8.01E-124 T 14-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 14 430 2.7E-116 T 14-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 PIRSF PIRSF000505 6 443 5.9E-117 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 ProSitePatterns PS00885 EPSP synthase signature 2. 347 365 - T 14-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 16 439 32.285 T 14-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Thimo_1876 97b05d87a249cad7174a5eccf67c2d02 443 Gene3D G3DSA:3.65.10.10 20 430 6.6E-153 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Thimo_1276 47e77f538e29e7cdee652c8d76ef46db 575 Gene3D G3DSA:3.100.10.20 240 316 3.9E-16 T 14-10-2018 Thimo_1276 47e77f538e29e7cdee652c8d76ef46db 575 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 32 217 1.1E-28 T 14-10-2018 IPR013343 CRISPR-associated protein Cas4 Thimo_1276 47e77f538e29e7cdee652c8d76ef46db 575 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 224 560 27.205 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Thimo_1276 47e77f538e29e7cdee652c8d76ef46db 575 Gene3D G3DSA:3.90.320.10 26 217 4.6E-10 T 14-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal Thimo_1276 47e77f538e29e7cdee652c8d76ef46db 575 Pfam PF01867 CRISPR associated protein Cas1 243 529 1.8E-93 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Thimo_1276 47e77f538e29e7cdee652c8d76ef46db 575 Pfam PF01930 Domain of unknown function DUF83 32 217 6.4E-24 T 14-10-2018 IPR022765 Dna2/Cas4, domain of unknown function DUF83 Thimo_1276 47e77f538e29e7cdee652c8d76ef46db 575 Gene3D G3DSA:1.20.120.920 321 575 6.0E-82 T 14-10-2018 Thimo_1276 47e77f538e29e7cdee652c8d76ef46db 575 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 243 569 1.1E-76 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Thimo_3007 e85bc4a21b71f3196aa2d974db8dbb90 373 Pfam PF16864 Dimerisation domain 45 108 5.2E-13 T 14-10-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain Thimo_3007 e85bc4a21b71f3196aa2d974db8dbb90 373 PIRSF PIRSF005739 35 370 1.6E-23 T 14-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 Thimo_3007 e85bc4a21b71f3196aa2d974db8dbb90 373 Gene3D G3DSA:1.10.10.2650 51 337 1.2E-67 T 14-10-2018 Thimo_3007 e85bc4a21b71f3196aa2d974db8dbb90 373 SUPERFAMILY SSF46785 43 124 8.38E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3007 e85bc4a21b71f3196aa2d974db8dbb90 373 Gene3D G3DSA:3.40.50.150 188 353 1.2E-67 T 14-10-2018 Thimo_3007 e85bc4a21b71f3196aa2d974db8dbb90 373 Pfam PF00891 O-methyltransferase 129 356 4.0E-44 T 14-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 Thimo_3007 e85bc4a21b71f3196aa2d974db8dbb90 373 SUPERFAMILY SSF53335 127 364 6.66E-39 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3207 aa60708dbd824c3b88436c80656b9528 533 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 289 458 2.7E-31 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3207 aa60708dbd824c3b88436c80656b9528 533 Gene3D G3DSA:1.10.645.20 176 532 1.8E-102 T 14-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3207 aa60708dbd824c3b88436c80656b9528 533 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 100 149 4.0E-11 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3207 aa60708dbd824c3b88436c80656b9528 533 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 69 152 8.8E-18 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3207 aa60708dbd824c3b88436c80656b9528 533 SUPERFAMILY SSF56762 186 532 3.14E-92 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3207 aa60708dbd824c3b88436c80656b9528 533 SUPERFAMILY SSF143243 40 190 2.35E-24 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3207 aa60708dbd824c3b88436c80656b9528 533 Gene3D G3DSA:3.30.460.80 60 131 4.1E-9 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3207 aa60708dbd824c3b88436c80656b9528 533 Pfam PF00374 Nickel-dependent hydrogenase 214 280 1.0E-7 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Thimo_0230 2f72d92126b39b6c36569a45394f598a 275 Pfam PF02508 Rnf-Nqr subunit, membrane protein 87 272 1.8E-46 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_0848 8b85a34d6a823061aab3f4bb0838c593 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.8E-8 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Thimo_0848 8b85a34d6a823061aab3f4bb0838c593 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.8E-8 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Thimo_0848 8b85a34d6a823061aab3f4bb0838c593 198 SUPERFAMILY SSF48498 103 195 3.48E-6 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Thimo_0848 8b85a34d6a823061aab3f4bb0838c593 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 2.8E-15 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Thimo_0848 8b85a34d6a823061aab3f4bb0838c593 198 SUPERFAMILY SSF46689 10 79 1.69E-18 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0848 8b85a34d6a823061aab3f4bb0838c593 198 Gene3D G3DSA:1.10.357.10 4 198 3.5E-35 T 14-10-2018 Thimo_0848 8b85a34d6a823061aab3f4bb0838c593 198 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 102 197 5.4E-8 T 14-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 10 775 1.4E-233 T 14-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 Gene3D G3DSA:3.30.420.350 496 763 3.3E-123 T 14-10-2018 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 PIRSF PIRSF006256 4 785 9.0E-287 T 14-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 SUPERFAMILY SSF55821 177 398 2.78E-52 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 Pfam PF00708 Acylphosphatase 10 92 6.8E-19 T 14-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 Pfam PF01300 Telomere recombination 217 391 2.2E-51 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 Gene3D G3DSA:3.30.420.360 390 775 3.3E-123 T 14-10-2018 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 ProSitePatterns PS00150 Acylphosphatase signature 1. 12 22 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 Gene3D G3DSA:3.30.110.120 260 378 9.6E-147 T 14-10-2018 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 SUPERFAMILY SSF54975 10 92 5.45E-21 T 14-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 Gene3D G3DSA:3.90.870.50 10 369 9.6E-147 T 14-10-2018 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 Pfam PF07503 HypF finger 110 143 7.7E-17 T 14-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 Thimo_1957 b9a3ab9c5947c9b870e4c173f3091c9c 789 Pfam PF07503 HypF finger 160 192 4.2E-17 T 14-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 Thimo_1509 14145cc0d4e1fa7129df98552ca567fe 123 Pfam PF01250 Ribosomal protein S6 3 91 1.0E-24 T 14-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1509 14145cc0d4e1fa7129df98552ca567fe 123 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.519 T 14-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 Thimo_1509 14145cc0d4e1fa7129df98552ca567fe 123 SUPERFAMILY SSF54995 1 102 4.32E-35 T 14-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1509 14145cc0d4e1fa7129df98552ca567fe 123 Gene3D G3DSA:3.30.70.60 1 92 1.1E-29 T 14-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Thimo_1509 14145cc0d4e1fa7129df98552ca567fe 123 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 6.0E-32 T 14-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_3541 db72e0c48a50db577b3a3217d5c8a946 73 Pfam PF05082 Rop-like 5 68 3.7E-24 T 14-10-2018 IPR007774 Putative nitrogen fixation protein Thimo_3541 db72e0c48a50db577b3a3217d5c8a946 73 Gene3D G3DSA:1.10.287.660 2 71 8.6E-10 T 14-10-2018 IPR029012 Helix hairpin bin domain superfamily Thimo_3541 db72e0c48a50db577b3a3217d5c8a946 73 PIRSF PIRSF037676 1 70 8.5E-19 T 14-10-2018 IPR007774 Putative nitrogen fixation protein Thimo_2180 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 Pfam PF02219 Methylenetetrahydrofolate reductase 7 279 1.2E-90 T 14-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Thimo_2180 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 8 278 1.8E-101 T 14-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 Thimo_2180 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 SUPERFAMILY SSF51730 6 280 1.35E-98 T 14-10-2018 IPR029041 FAD-linked oxidoreductase-like Thimo_2180 be5ccfdb0ef4b4701c5aa72f47b59e0c 284 Gene3D G3DSA:3.20.20.220 2 284 2.8E-100 T 14-10-2018 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Gene3D G3DSA:3.10.20.310 27 98 1.7E-19 T 14-10-2018 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 31 775 7.3E-265 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 775 24.834 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Gene3D G3DSA:3.10.20.310 99 180 7.4E-17 T 14-10-2018 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Gene3D G3DSA:3.10.20.310 272 353 2.7E-17 T 14-10-2018 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Gene3D G3DSA:2.40.160.50 433 775 5.2E-107 T 14-10-2018 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Gene3D G3DSA:3.10.20.310 355 432 5.7E-26 T 14-10-2018 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 PIRSF PIRSF006076 5 775 4.3E-259 T 14-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Gene3D G3DSA:3.10.20.310 182 271 1.8E-22 T 14-10-2018 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Pfam PF01103 Surface antigen 455 775 6.4E-77 T 14-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Pfam PF07244 Surface antigen variable number repeat 100 179 3.0E-11 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Pfam PF07244 Surface antigen variable number repeat 273 351 7.8E-12 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Pfam PF07244 Surface antigen variable number repeat 354 428 1.2E-16 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Thimo_0727 baea55dc1cf5e73383dd445988732934 775 Pfam PF07244 Surface antigen variable number repeat 183 270 4.9E-16 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Thimo_2750 e2f2352317375260f982d7cc08727985 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 45.162 T 14-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_2750 e2f2352317375260f982d7cc08727985 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 407 6.4E-115 T 14-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Thimo_2750 e2f2352317375260f982d7cc08727985 419 Gene3D G3DSA:3.65.10.10 6 414 5.6E-169 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Thimo_2750 e2f2352317375260f982d7cc08727985 419 Gene3D G3DSA:3.65.10.10 21 229 5.6E-169 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Thimo_2750 e2f2352317375260f982d7cc08727985 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 416 2.3E-179 T 14-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_2750 e2f2352317375260f982d7cc08727985 419 SUPERFAMILY SSF55205 2 418 4.41E-143 T 14-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 Gene3D G3DSA:3.50.30.10 371 475 8.5E-40 T 14-10-2018 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 SUPERFAMILY SSF51621 459 786 1.54E-95 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 692 710 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 Gene3D G3DSA:3.30.470.20 194 355 1.1E-56 T 14-10-2018 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 Pfam PF00391 PEP-utilising enzyme, mobile domain 382 453 5.8E-25 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 SUPERFAMILY SSF56059 1 381 3.65E-108 T 14-10-2018 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 339 2.1E-114 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 412 423 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 SUPERFAMILY SSF52009 346 464 1.31E-32 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 PIRSF PIRSF000854 1 790 0.0 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 Gene3D G3DSA:3.20.20.60 476 788 1.4E-101 T 14-10-2018 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 472 785 3.1E-59 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 Gene3D G3DSA:3.30.1490.20 1 193 7.4E-69 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_2112 53ee01831176f8ec5cfe040f2988255e 790 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 4 788 0.0 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Thimo_1816 daef55be9b37e7afca6c8412e72603d1 78 Gene3D G3DSA:3.40.30.10 1 76 1.4E-24 T 14-10-2018 Thimo_1816 daef55be9b37e7afca6c8412e72603d1 78 Pfam PF13192 Thioredoxin domain 3 76 7.2E-25 T 14-10-2018 IPR012336 Thioredoxin-like fold Thimo_1816 daef55be9b37e7afca6c8412e72603d1 78 SUPERFAMILY SSF52833 4 76 3.13E-17 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_1816 daef55be9b37e7afca6c8412e72603d1 78 PIRSF PIRSF037031 1 78 4.9E-28 T 14-10-2018 IPR005243 Redox-active disulphide protein 2 Thimo_1796 09617ad50508b6dd84b76a5b415862a2 78 SMART SM00899 3 76 5.1E-20 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Thimo_1796 09617ad50508b6dd84b76a5b415862a2 78 Pfam PF04023 FeoA domain 3 72 3.9E-17 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Thimo_1796 09617ad50508b6dd84b76a5b415862a2 78 Gene3D G3DSA:2.30.30.90 6 78 1.3E-25 T 14-10-2018 IPR038157 Ferrous iron transporter, core domain Thimo_1796 09617ad50508b6dd84b76a5b415862a2 78 SUPERFAMILY SSF50037 7 75 1.42E-19 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.50.40.10 197 395 3.5E-76 T 14-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 SMART SM00874 403 471 6.7E-22 T 14-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.930.10 495 690 8.4E-58 T 14-10-2018 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 5.4E-25 T 14-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 43.186 T 14-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Pfam PF03484 tRNA synthetase B5 domain 407 471 9.7E-15 T 14-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Pfam PF03483 B3/4 domain 212 385 1.9E-68 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF56037 196 392 6.54E-72 T 14-10-2018 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF50249 35 196 1.2E-48 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.56.10 7 180 2.9E-72 T 14-10-2018 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF54991 693 791 1.96E-26 T 14-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 2.7E-246 T 14-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF55681 467 687 4.32E-48 T 14-10-2018 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:2.40.50.140 39 154 2.9E-72 T 14-10-2018 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Pfam PF01588 Putative tRNA binding domain 45 145 1.3E-23 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.56.10 401 475 8.7E-19 T 14-10-2018 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 SUPERFAMILY SSF46955 404 475 2.75E-15 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 SMART SM00873 212 385 7.2E-94 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 SMART SM00896 698 791 3.8E-35 T 14-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Thimo_2823 5da2b399ac40c8cbd3e57e68569d5304 792 Gene3D G3DSA:3.30.70.380 699 792 1.4E-25 T 14-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 Thimo_1485 3b6db7917ab506cb1fbe1d9ac4270f86 206 Pfam PF01813 ATP synthase subunit D 15 202 2.6E-41 T 14-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1485 3b6db7917ab506cb1fbe1d9ac4270f86 206 TIGRFAM TIGR00309 V_ATPase_subD: V-type ATPase, D subunit 7 204 4.6E-27 T 14-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF00391 PEP-utilising enzyme, mobile domain 429 510 2.1E-26 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.50.30.10 391 516 1.2E-69 T 14-10-2018 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 SUPERFAMILY SSF51621 518 922 9.77E-112 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 SUPERFAMILY SSF56059 9 383 1.07E-126 T 14-10-2018 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 527 920 2.0E-86 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 309 364 4.1E-9 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 69 299 5.2E-30 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 58 1.9E-8 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 457 468 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 9 922 0.0 T 14-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 SUPERFAMILY SSF52009 394 519 6.28E-35 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:1.20.80.30 117 204 2.3E-91 T 14-10-2018 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 PIRSF PIRSF000853 7 926 0.0 T 14-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:1.10.189.10 353 536 1.2E-69 T 14-10-2018 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.30.470.20 252 349 8.6E-40 T 14-10-2018 Thimo_3326 8b684f9787d18cd240301f2f819b43d1 926 Gene3D G3DSA:3.30.1490.20 16 251 2.3E-91 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_0738 3fcb50e79d03effa0d63c7604b74d7c9 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 1.1E-74 T 14-10-2018 IPR001405 Uncharacterised protein family UPF0758 Thimo_0738 3fcb50e79d03effa0d63c7604b74d7c9 224 Gene3D G3DSA:3.40.140.10 101 224 1.8E-42 T 14-10-2018 Thimo_0738 3fcb50e79d03effa0d63c7604b74d7c9 224 SUPERFAMILY SSF47781 15 91 7.56E-9 T 14-10-2018 IPR010994 RuvA domain 2-like Thimo_0738 3fcb50e79d03effa0d63c7604b74d7c9 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 14-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site Thimo_0738 3fcb50e79d03effa0d63c7604b74d7c9 224 Pfam PF04002 RadC-like JAB domain 103 222 3.6E-44 T 14-10-2018 IPR025657 RadC-like JAB domain Thimo_0738 3fcb50e79d03effa0d63c7604b74d7c9 224 SUPERFAMILY SSF102712 114 193 3.92E-6 T 14-10-2018 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 Pfam PF13432 Tetratricopeptide repeat 185 242 1.0E-4 T 14-10-2018 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 SMART SM00028 68 101 140.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 SMART SM00028 106 139 20.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 SMART SM00028 213 246 3.5 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 SMART SM00028 179 212 120.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 Gene3D G3DSA:1.25.40.10 175 346 9.8E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 SUPERFAMILY SSF48452 38 244 6.45E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 Gene3D G3DSA:1.25.40.10 31 173 2.3E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 384 34.565 T 14-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 Thimo_1711 674a8e7b9942bd4ec9d19891400394ff 400 Pfam PF13176 Tetratricopeptide repeat 70 98 0.0075 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0085 8569304f7b93e2b47f1dfdf8f5cfc516 201 Pfam PF04350 Pilus assembly protein, PilO 50 196 3.8E-53 T 14-10-2018 IPR007445 Pilus assembly protein, PilO Thimo_0085 8569304f7b93e2b47f1dfdf8f5cfc516 201 Gene3D G3DSA:3.30.70.60 95 201 4.3E-35 T 14-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Thimo_0085 8569304f7b93e2b47f1dfdf8f5cfc516 201 PIRSF PIRSF016482 1 199 7.2E-63 T 14-10-2018 IPR007445 Pilus assembly protein, PilO Thimo_0085 8569304f7b93e2b47f1dfdf8f5cfc516 201 Gene3D G3DSA:1.10.287.540 58 94 9.6E-17 T 14-10-2018 Thimo_2181 10b11405ebafd961e1c89464a4b6a58a 530 Gene3D G3DSA:3.30.590.20 22 528 5.4E-179 T 14-10-2018 Thimo_2181 10b11405ebafd961e1c89464a4b6a58a 530 SUPERFAMILY SSF55931 13 520 6.54E-172 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Thimo_2181 10b11405ebafd961e1c89464a4b6a58a 530 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 29 522 2.9E-160 T 14-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Thimo_2181 10b11405ebafd961e1c89464a4b6a58a 530 Pfam PF04262 Glutamate-cysteine ligase 22 383 3.4E-151 T 14-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Thimo_2181 10b11405ebafd961e1c89464a4b6a58a 530 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 530 185.746 T 14-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Thimo_1533 b9bfc353c0c343dd241fcda3ce0eb6a8 187 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 3.6E-12 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Thimo_1533 b9bfc353c0c343dd241fcda3ce0eb6a8 187 SMART SM00360 8 80 2.6E-12 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Thimo_1533 b9bfc353c0c343dd241fcda3ce0eb6a8 187 SUPERFAMILY SSF54928 5 82 1.34E-16 T 14-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 Thimo_1533 b9bfc353c0c343dd241fcda3ce0eb6a8 187 Gene3D G3DSA:3.30.70.330 2 94 3.9E-15 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 269 275 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 Gene3D G3DSA:3.40.50.150 136 449 1.9E-76 T 14-10-2018 Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 SUPERFAMILY SSF53335 5 478 5.8E-114 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 Pfam PF02384 N-6 DNA Methylase 138 444 3.0E-71 T 14-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 197 4.8E-22 T 14-10-2018 Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 159 175 4.8E-22 T 14-10-2018 Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 266 278 4.8E-22 T 14-10-2018 Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 295 319 4.8E-22 T 14-10-2018 Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 Pfam PF12161 HsdM N-terminal domain 5 127 1.2E-14 T 14-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Thimo_1985 2d133a30c6d9f43d907536e18b50c7c5 482 Gene3D G3DSA:1.20.1260.30 1 133 8.9E-44 T 14-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily Thimo_2790 668e911a573d5d53e5578f34cfbc9f30 454 PIRSF PIRSF000167 12 445 5.2E-133 T 14-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 Thimo_2790 668e911a573d5d53e5578f34cfbc9f30 454 Gene3D G3DSA:3.80.30.20 13 368 2.7E-101 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_2790 668e911a573d5d53e5578f34cfbc9f30 454 SUPERFAMILY SSF102114 23 434 6.02E-104 T 14-10-2018 Thimo_2790 668e911a573d5d53e5578f34cfbc9f30 454 Pfam PF04055 Radical SAM superfamily 61 234 8.9E-18 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_2790 668e911a573d5d53e5578f34cfbc9f30 454 SMART SM00729 56 277 3.4E-49 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_2790 668e911a573d5d53e5578f34cfbc9f30 454 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 25 441 5.4E-114 T 14-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 Thimo_0245 93508dc2e8831ec00578592482db5ed5 248 Gene3D G3DSA:3.10.20.30 21 81 5.2E-5 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_0245 93508dc2e8831ec00578592482db5ed5 248 SUPERFAMILY SSF54292 24 101 8.0E-9 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Thimo_0245 93508dc2e8831ec00578592482db5ed5 248 Gene3D G3DSA:1.10.1060.10 123 198 1.2E-16 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0245 93508dc2e8831ec00578592482db5ed5 248 SUPERFAMILY SSF46548 101 191 4.36E-16 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0245 93508dc2e8831ec00578592482db5ed5 248 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 173 184 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0245 93508dc2e8831ec00578592482db5ed5 248 Pfam PF13187 4Fe-4S dicluster domain 134 187 3.3E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0245 93508dc2e8831ec00578592482db5ed5 248 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 135 146 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0245 93508dc2e8831ec00578592482db5ed5 248 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 64 72 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Thimo_2491 cd3f6546903de2f3da7f2b746dc35d10 317 Pfam PF02401 LytB protein 4 282 1.3E-90 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Thimo_2491 cd3f6546903de2f3da7f2b746dc35d10 317 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4 284 4.7E-101 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Thimo_2491 cd3f6546903de2f3da7f2b746dc35d10 317 Gene3D G3DSA:3.40.1010.20 98 196 3.2E-111 T 14-10-2018 Thimo_2491 cd3f6546903de2f3da7f2b746dc35d10 317 Gene3D G3DSA:3.40.50.11270 13 97 3.2E-111 T 14-10-2018 Thimo_2491 cd3f6546903de2f3da7f2b746dc35d10 317 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 2 286 37.712 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Thimo_2491 cd3f6546903de2f3da7f2b746dc35d10 317 Gene3D G3DSA:3.40.1010.20 7 282 3.2E-111 T 14-10-2018 Thimo_1693 b94aae95c439cd33e2520b276fca6139 164 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 126 2.0E-36 T 14-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Thimo_1693 b94aae95c439cd33e2520b276fca6139 164 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 14 138 6.4E-41 T 14-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Thimo_1693 b94aae95c439cd33e2520b276fca6139 164 SUPERFAMILY SSF52540 27 123 1.65E-21 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1693 b94aae95c439cd33e2520b276fca6139 164 Gene3D G3DSA:3.40.50.300 1 152 2.7E-43 T 14-10-2018 Thimo_1211 10441f103d29cecd6c2b00e846120a8e 371 Gene3D G3DSA:3.20.20.70 20 369 5.5E-159 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1211 10441f103d29cecd6c2b00e846120a8e 371 PIRSF PIRSF001361 16 371 5.8E-160 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Thimo_1211 10441f103d29cecd6c2b00e846120a8e 371 SUPERFAMILY SSF51569 26 367 6.49E-132 T 14-10-2018 Thimo_1211 10441f103d29cecd6c2b00e846120a8e 371 Pfam PF00793 DAHP synthetase I family 59 354 2.4E-96 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Thimo_1211 10441f103d29cecd6c2b00e846120a8e 371 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 25 368 4.4E-158 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Thimo_2116 a832111197386320ed63d8a44aba96a9 288 Pfam PF00781 Diacylglycerol kinase catalytic domain 5 121 1.7E-22 T 14-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Thimo_2116 a832111197386320ed63d8a44aba96a9 288 SUPERFAMILY SSF111331 1 288 1.07E-65 T 14-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Thimo_2116 a832111197386320ed63d8a44aba96a9 288 SMART SM00046 4 125 8.4E-10 T 14-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Thimo_2116 a832111197386320ed63d8a44aba96a9 288 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 5 288 7.5E-46 T 14-10-2018 IPR005218 Diacylglycerol/lipid kinase Thimo_2116 a832111197386320ed63d8a44aba96a9 288 Gene3D G3DSA:3.40.50.10330 1 122 5.2E-28 T 14-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Thimo_2116 a832111197386320ed63d8a44aba96a9 288 Gene3D G3DSA:2.60.200.40 123 281 2.9E-34 T 14-10-2018 Thimo_2194 68cc044b1917bb16cbb144bb829b8fd6 114 Pfam PF01381 Helix-turn-helix 58 110 2.2E-15 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_2194 68cc044b1917bb16cbb144bb829b8fd6 114 SUPERFAMILY SSF47413 57 112 5.09E-15 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_2194 68cc044b1917bb16cbb144bb829b8fd6 114 Gene3D G3DSA:1.10.260.40 57 114 1.9E-17 T 14-10-2018 Thimo_2194 68cc044b1917bb16cbb144bb829b8fd6 114 SMART SM00530 57 112 9.0E-16 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3097 3bffc474a456656e745eade3beca6acf 352 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 348 4.6E-159 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Thimo_3097 3bffc474a456656e745eade3beca6acf 352 SUPERFAMILY SSF51569 7 348 3.35E-133 T 14-10-2018 Thimo_3097 3bffc474a456656e745eade3beca6acf 352 PIRSF PIRSF001361 1 352 1.5E-158 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Thimo_3097 3bffc474a456656e745eade3beca6acf 352 Pfam PF00793 DAHP synthetase I family 42 336 4.1E-97 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Thimo_3097 3bffc474a456656e745eade3beca6acf 352 Gene3D G3DSA:3.20.20.70 1 350 2.1E-160 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3287 169c5bf6da0df0b4531c337c049cf560 552 Gene3D G3DSA:1.10.1130.10 52 310 3.3E-85 T 14-10-2018 Thimo_3287 169c5bf6da0df0b4531c337c049cf560 552 SUPERFAMILY SSF48695 61 507 6.44E-88 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_3287 169c5bf6da0df0b4531c337c049cf560 552 TIGRFAM TIGR04315 octaheme_Shew: octaheme c-type cytochrome, tetrathionate reductase family 51 507 3.5E-178 T 14-10-2018 IPR024673 Octaheme c-type cytochrome Thimo_3287 169c5bf6da0df0b4531c337c049cf560 552 PIRSF PIRSF039014 15 543 3.5E-152 T 14-10-2018 IPR024673 Octaheme c-type cytochrome Thimo_3287 169c5bf6da0df0b4531c337c049cf560 552 Pfam PF11783 Cytochrome c bacterial 321 496 4.1E-58 T 14-10-2018 IPR024673 Octaheme c-type cytochrome Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 PIRSF PIRSF001456 3 360 5.4E-136 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 SUPERFAMILY SSF103263 4 352 2.35E-143 T 14-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 Pfam PF01264 Chorismate synthase 10 345 2.0E-135 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 TIGRFAM TIGR00033 aroC: chorismate synthase 11 350 8.5E-136 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 14-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 Gene3D G3DSA:3.60.150.10 1 363 1.4E-150 T 14-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_1101 aa0be7d89313ec7952c1f55219d33b8d 367 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 37.334 T 14-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Thimo_2589 eb3b77419141ee3a53306031d93c92d9 483 SUPERFAMILY SSF53720 6 478 8.77E-145 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Thimo_2589 eb3b77419141ee3a53306031d93c92d9 483 Gene3D G3DSA:3.40.309.10 254 483 2.1E-76 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Thimo_2589 eb3b77419141ee3a53306031d93c92d9 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 14-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Thimo_2589 eb3b77419141ee3a53306031d93c92d9 483 Pfam PF00171 Aldehyde dehydrogenase family 16 472 5.4E-145 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Thimo_2589 eb3b77419141ee3a53306031d93c92d9 483 Gene3D G3DSA:3.40.605.10 5 253 1.0E-71 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 Pfam PF13416 Bacterial extracellular solute-binding protein 46 334 1.2E-24 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PIRSF PIRSF019574 1 370 1.1E-118 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 Gene3D G3DSA:3.40.190.10 32 338 3.3E-123 T 14-10-2018 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 Gene3D G3DSA:3.40.190.10 137 364 3.3E-123 T 14-10-2018 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 269 288 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 314 340 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 35 51 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 159 173 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 219 238 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 51 72 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 95 108 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 128 144 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 182 201 2.4E-52 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Thimo_0945 eee7e9036a80b3f014746e90e3403408 370 SUPERFAMILY SSF53850 29 367 6.14E-90 T 14-10-2018 Thimo_1350 a84b1c062f8854a575e37f32ca679500 430 Gene3D G3DSA:1.25.40.10 141 200 2.7E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1350 a84b1c062f8854a575e37f32ca679500 430 SMART SM00028 163 196 4.8E-5 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1350 a84b1c062f8854a575e37f32ca679500 430 SUPERFAMILY SSF48452 154 260 2.23E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1350 a84b1c062f8854a575e37f32ca679500 430 Pfam PF07719 Tetratricopeptide repeat 164 196 1.0E-6 T 14-10-2018 IPR013105 Tetratricopeptide repeat 2 Thimo_1350 a84b1c062f8854a575e37f32ca679500 430 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 4 118 1.2E-32 T 14-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI Thimo_1350 a84b1c062f8854a575e37f32ca679500 430 Gene3D G3DSA:1.25.40.10 201 283 2.3E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3021 41872bef054fd089d23d0e9bdee78345 233 SUPERFAMILY SSF53335 4 169 1.51E-31 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3021 41872bef054fd089d23d0e9bdee78345 233 Pfam PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus 132 230 1.4E-34 T 14-10-2018 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3021 41872bef054fd089d23d0e9bdee78345 233 Pfam PF03602 Conserved hypothetical protein 95 40 97 9.3E-7 T 14-10-2018 Thimo_3021 41872bef054fd089d23d0e9bdee78345 233 TIGRFAM TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase 10 230 7.1E-76 T 14-10-2018 IPR010251 Magnesium-protoporphyrin IX methyltransferase GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3021 41872bef054fd089d23d0e9bdee78345 233 Gene3D G3DSA:3.40.50.150 4 233 2.8E-56 T 14-10-2018 Thimo_2214 7b31c69d88ebcfcb89502178d648cdbe 444 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 152 418 2.9E-81 T 14-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 Thimo_2214 7b31c69d88ebcfcb89502178d648cdbe 444 Pfam PF01458 Uncharacterized protein family (UPF0051) 188 411 2.0E-70 T 14-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 Thimo_2214 7b31c69d88ebcfcb89502178d648cdbe 444 SUPERFAMILY SSF101960 27 420 2.75E-99 T 14-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Thimo_1292 de556d1ba4ab3cf6910680966b614b87 228 Gene3D G3DSA:3.30.420.10 38 217 1.6E-36 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_1292 de556d1ba4ab3cf6910680966b614b87 228 SMART SM00479 43 217 7.8E-27 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_1292 de556d1ba4ab3cf6910680966b614b87 228 SUPERFAMILY SSF53098 37 213 2.72E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1292 de556d1ba4ab3cf6910680966b614b87 228 Pfam PF00929 Exonuclease 46 208 1.3E-15 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_0084 c74ac08bd6c06634084b7356ac018151 189 Pfam PF05137 Fimbrial assembly protein (PilN) 100 175 6.8E-21 T 14-10-2018 IPR007813 Fimbrial assembly PilN Thimo_2094 2c355d88b709af1564002a5a36440445 68 PIRSF PIRSF002599 1 68 1.3E-24 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 Thimo_2094 2c355d88b709af1564002a5a36440445 68 SUPERFAMILY SSF50249 1 66 2.18E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2094 2c355d88b709af1564002a5a36440445 68 PRINTS PR00050 Cold shock protein signature 25 34 2.2E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_2094 2c355d88b709af1564002a5a36440445 68 PRINTS PR00050 Cold shock protein signature 40 58 2.2E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_2094 2c355d88b709af1564002a5a36440445 68 PRINTS PR00050 Cold shock protein signature 4 19 2.2E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_2094 2c355d88b709af1564002a5a36440445 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 2.3E-30 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_2094 2c355d88b709af1564002a5a36440445 68 SMART SM00357 3 67 2.5E-29 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Thimo_2094 2c355d88b709af1564002a5a36440445 68 Gene3D G3DSA:2.40.50.140 1 65 5.1E-29 T 14-10-2018 Thimo_2094 2c355d88b709af1564002a5a36440445 68 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 66 4.4E-35 T 14-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 131 276 4.5E-49 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 Gene3D G3DSA:3.40.50.11540 136 285 2.6E-16 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 Pfam PF10531 SLBB domain 289 337 1.4E-14 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 3 437 3.9E-175 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 SUPERFAMILY SSF142019 86 296 4.05E-57 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 408 419 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 Pfam PF13375 RnfC Barrel sandwich hybrid domain 5 106 3.7E-30 T 14-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 Gene3D G3DSA:3.10.20.600 287 347 4.3E-5 T 14-10-2018 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 503 161.443 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 Gene3D G3DSA:1.10.1060.10 357 436 7.1E-11 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 Pfam PF13237 4Fe-4S dicluster domain 365 419 6.0E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1270 c73266133da1701a3b6d6fbcc844e273 503 SUPERFAMILY SSF46548 329 440 9.68E-22 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 Gene3D G3DSA:3.30.360.10 136 348 2.4E-167 T 14-10-2018 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 SUPERFAMILY SSF55021 353 423 9.93E-13 T 14-10-2018 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 SUPERFAMILY SSF51735 1 158 5.84E-33 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 Pfam PF01842 ACT domain 354 421 8.3E-14 T 14-10-2018 IPR002912 ACT domain Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 Gene3D G3DSA:3.40.50.720 4 340 2.4E-167 T 14-10-2018 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 Gene3D G3DSA:3.30.70.260 349 423 2.4E-167 T 14-10-2018 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 3.5E-17 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 Pfam PF00742 Homoserine dehydrogenase 137 315 2.4E-64 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 PIRSF PIRSF000098 1 435 1.2E-160 T 14-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Thimo_1097 3e4dbbdc48b0ab01464a4baa78444500 437 SUPERFAMILY SSF55347 137 302 1.57E-53 T 14-10-2018 Thimo_2859 040255bb33bda71333c146be353b9c12 204 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 201 1.1E-69 T 14-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2859 040255bb33bda71333c146be353b9c12 204 Pfam PF00573 Ribosomal protein L4/L1 family 16 202 1.3E-59 T 14-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 Thimo_2859 040255bb33bda71333c146be353b9c12 204 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 7 204 32.466 T 14-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2859 040255bb33bda71333c146be353b9c12 204 Gene3D G3DSA:3.40.1370.10 5 204 7.9E-64 T 14-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_2859 040255bb33bda71333c146be353b9c12 204 SUPERFAMILY SSF52166 12 203 4.84E-66 T 14-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 SUPERFAMILY SSF50156 237 361 2.37E-25 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 Gene3D G3DSA:2.30.42.10 394 468 2.0E-12 T 14-10-2018 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 Pfam PF13365 Trypsin-like peptidase domain 105 240 1.5E-33 T 14-10-2018 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 SUPERFAMILY SSF50156 399 468 5.39E-14 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 53 466 4.4E-142 T 14-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 Pfam PF13180 PDZ domain 282 366 9.0E-16 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 SMART SM00228 385 462 0.007 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 SMART SM00228 279 361 1.2E-15 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 Gene3D G3DSA:2.40.10.120 51 273 2.9E-86 T 14-10-2018 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 SUPERFAMILY SSF50494 52 275 7.14E-65 T 14-10-2018 IPR009003 Peptidase S1, PA clan Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 115 127 3.4E-56 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 319 331 3.4E-56 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 136 156 3.4E-56 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 233 250 3.4E-56 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 211 228 3.4E-56 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 PRINTS PR00834 HtrA/DegQ protease family signature 176 200 3.4E-56 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_0129 f293d358cc013d34d968e70ebc74689b 470 Gene3D G3DSA:2.30.42.10 274 375 3.8E-25 T 14-10-2018 Thimo_3263 7145db55e4e40ec3a6a33c8319cefb13 129 Gene3D G3DSA:2.60.40.1470 2 129 7.9E-48 T 14-10-2018 IPR036767 ApaG domain superfamily Thimo_3263 7145db55e4e40ec3a6a33c8319cefb13 129 Pfam PF04379 ApaG domain 22 105 1.4E-34 T 14-10-2018 IPR007474 ApaG domain Thimo_3263 7145db55e4e40ec3a6a33c8319cefb13 129 SUPERFAMILY SSF110069 7 128 1.02E-47 T 14-10-2018 IPR036767 ApaG domain superfamily Thimo_3263 7145db55e4e40ec3a6a33c8319cefb13 129 Hamap MF_00791 Protein ApaG [apaG]. 4 129 33.065 T 14-10-2018 IPR023065 Uncharacterised protein family ApaG Thimo_1490 7520cf66d98563d8b74274250888ba5f 152 SUPERFAMILY SSF81333 83 150 4.84E-14 T 14-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Thimo_1490 7520cf66d98563d8b74274250888ba5f 152 Pfam PF00137 ATP synthase subunit C 89 148 1.8E-14 T 14-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Thimo_1490 7520cf66d98563d8b74274250888ba5f 152 Gene3D G3DSA:1.20.120.610 4 151 2.4E-14 T 14-10-2018 Thimo_1490 7520cf66d98563d8b74274250888ba5f 152 PRINTS PR00124 ATP synthase C subunit signature 124 149 3.0E-5 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1490 7520cf66d98563d8b74274250888ba5f 152 PRINTS PR00124 ATP synthase C subunit signature 86 105 3.0E-5 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_0592 b6b03b584910f37621ce9240015d61a5 343 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 213 226 - T 14-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0592 b6b03b584910f37621ce9240015d61a5 343 Pfam PF00146 NADH dehydrogenase 17 329 1.1E-126 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0592 b6b03b584910f37621ce9240015d61a5 343 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 9 336 25.497 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0592 b6b03b584910f37621ce9240015d61a5 343 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 55 70 - T 14-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 SUPERFAMILY SSF81271 402 467 1.44E-19 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 55 738 6.1E-189 T 14-10-2018 IPR004811 RelA/SpoT family GO:0015969 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 Gene3D G3DSA:3.10.20.30 402 476 2.3E-29 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 Gene3D G3DSA:3.30.70.260 661 740 1.1E-19 T 14-10-2018 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 SUPERFAMILY SSF81301 213 384 1.96E-63 T 14-10-2018 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 Gene3D G3DSA:1.10.3210.10 14 212 3.8E-44 T 14-10-2018 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 Pfam PF13291 ACT domain 661 738 1.1E-20 T 14-10-2018 IPR002912 ACT domain Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 Pfam PF04607 Region found in RelA / SpoT proteins 256 366 1.4E-36 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 Pfam PF02824 TGS domain 408 467 2.9E-21 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 Gene3D G3DSA:3.30.460.10 213 345 1.3E-50 T 14-10-2018 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 SUPERFAMILY SSF55021 663 738 9.16E-15 T 14-10-2018 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 Pfam PF13328 HD domain 41 197 2.5E-40 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 SMART SM00954 256 366 5.0E-65 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 Thimo_1561 5a339c2baea5a54dd59578846b0f5414 740 SUPERFAMILY SSF109604 18 212 3.45E-41 T 14-10-2018 Thimo_0732 de04f7533bf0f5d4eb6c053ce2ab87fe 386 Gene3D G3DSA:3.40.50.2000 172 359 3.2E-5 T 14-10-2018 Thimo_0732 de04f7533bf0f5d4eb6c053ce2ab87fe 386 Pfam PF02684 Lipid-A-disaccharide synthetase 5 366 3.2E-106 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Thimo_0732 de04f7533bf0f5d4eb6c053ce2ab87fe 386 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 378 3.1E-112 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Thimo_0732 de04f7533bf0f5d4eb6c053ce2ab87fe 386 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 2 380 40.345 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Thimo_0732 de04f7533bf0f5d4eb6c053ce2ab87fe 386 SUPERFAMILY SSF53756 5 379 3.22E-30 T 14-10-2018 Thimo_0471 ebc603683dfdc17aaefae7c3c2fac472 394 TIGRFAM TIGR02484 CitB: CitB domain protein 21 381 9.4E-144 T 14-10-2018 IPR012830 Citrate utilization protein B Thimo_0471 ebc603683dfdc17aaefae7c3c2fac472 394 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 32 43 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0471 ebc603683dfdc17aaefae7c3c2fac472 394 SUPERFAMILY SSF103501 181 379 3.14E-23 T 14-10-2018 IPR036197 NarG-like superfamily Thimo_0471 ebc603683dfdc17aaefae7c3c2fac472 394 SUPERFAMILY SSF54862 28 112 4.88E-7 T 14-10-2018 Thimo_3339 dcf7a780dfe66e494378b158d1aac8d2 464 Gene3D G3DSA:3.20.20.110 139 441 1.5E-129 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3339 dcf7a780dfe66e494378b158d1aac8d2 464 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 188 196 - T 14-10-2018 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3339 dcf7a780dfe66e494378b158d1aac8d2 464 SUPERFAMILY SSF51649 140 457 8.64E-111 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3339 dcf7a780dfe66e494378b158d1aac8d2 464 Hamap MF_01339 Ribulose bisphosphate carboxylase [cbbM]. 3 461 77.999 T 14-10-2018 IPR020871 Ribulose bisphosphate carboxylase large subunit, type II GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3339 dcf7a780dfe66e494378b158d1aac8d2 464 SUPERFAMILY SSF54966 4 139 4.71E-49 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3339 dcf7a780dfe66e494378b158d1aac8d2 464 Gene3D G3DSA:3.30.70.150 7 138 1.4E-50 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3339 dcf7a780dfe66e494378b158d1aac8d2 464 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 144 442 1.6E-116 T 14-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3339 dcf7a780dfe66e494378b158d1aac8d2 464 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 14 132 5.9E-38 T 14-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_1761 7c05b6e25ffc091bfff20b4500f1581e 529 SUPERFAMILY SSF161098 3 255 6.67E-35 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1761 7c05b6e25ffc091bfff20b4500f1581e 529 Gene3D G3DSA:1.10.3720.10 283 523 9.8E-34 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1761 7c05b6e25ffc091bfff20b4500f1581e 529 SUPERFAMILY SSF161098 286 518 3.27E-34 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1761 7c05b6e25ffc091bfff20b4500f1581e 529 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 346 526 4.9E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_1761 7c05b6e25ffc091bfff20b4500f1581e 529 Gene3D G3DSA:1.10.3720.10 8 263 4.3E-43 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04563 RNA polymerase beta subunit 27 527 3.0E-41 T 14-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 SUPERFAMILY SSF64484 12 1383 0.0 T 14-10-2018 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF00562 RNA polymerase Rpb2, domain 6 746 1306 4.9E-162 T 14-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1110.10 325 469 3.0E-30 T 14-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1100.10 470 652 1.6E-68 T 14-10-2018 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF10385 RNA polymerase beta subunit external 1 domain 619 684 3.6E-23 T 14-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04565 RNA polymerase Rpb2, domain 3 541 608 1.9E-30 T 14-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1108 1120 - T 14-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1800.10 1294 1380 7.6E-11 T 14-10-2018 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1381 0.0 T 14-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04561 RNA polymerase Rpb2, domain 2 158 230 4.5E-6 T 14-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04561 RNA polymerase Rpb2, domain 2 451 482 7.9E-5 T 14-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.50.150 861 979 1.0E-42 T 14-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.270.10 818 860 2.9E-7 T 14-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.270.10 1080 1284 2.1E-86 T 14-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1100.10 18 177 1.8E-54 T 14-10-2018 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:3.90.1100.10 667 741 1.2E-20 T 14-10-2018 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1384 12.381 T 14-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Pfam PF04560 RNA polymerase Rpb2, domain 7 1308 1382 5.9E-27 T 14-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2867 f62b2be2f19f615c856fbcd235766dca 1384 Gene3D G3DSA:2.40.50.100 742 816 6.0E-31 T 14-10-2018 Thimo_1525 1cf00d0edc08c3d7295df5656d31c909 175 Gene3D G3DSA:2.60.40.200 31 175 2.7E-45 T 14-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Thimo_1525 1cf00d0edc08c3d7295df5656d31c909 175 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 41 172 4.0E-36 T 14-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Thimo_1525 1cf00d0edc08c3d7295df5656d31c909 175 SUPERFAMILY SSF49329 34 172 9.69E-41 T 14-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Thimo_3521 c5eb1b284ab9e661adfc3a6e762ee382 558 Gene3D G3DSA:2.40.440.10 243 469 3.2E-30 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_3521 c5eb1b284ab9e661adfc3a6e762ee382 558 SUPERFAMILY SSF47090 200 283 4.16E-15 T 14-10-2018 IPR036365 PGBD-like superfamily Thimo_3521 c5eb1b284ab9e661adfc3a6e762ee382 558 Pfam PF03734 L,D-transpeptidase catalytic domain 304 468 3.4E-32 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Thimo_3521 c5eb1b284ab9e661adfc3a6e762ee382 558 SUPERFAMILY SSF141523 300 458 7.46E-18 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_3521 c5eb1b284ab9e661adfc3a6e762ee382 558 Pfam PF01471 Putative peptidoglycan binding domain 221 275 1.5E-9 T 14-10-2018 IPR002477 Peptidoglycan binding-like Thimo_1654 444b2886cac9c8b76dd1b14cffeb4a87 232 SUPERFAMILY SSF81342 4 184 1.83E-31 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_1654 444b2886cac9c8b76dd1b14cffeb4a87 232 Gene3D G3DSA:1.20.950.20 1 169 1.8E-12 T 14-10-2018 Thimo_1654 444b2886cac9c8b76dd1b14cffeb4a87 232 Pfam PF01292 Prokaryotic cytochrome b561 8 178 1.4E-17 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_1574 8bf7ccd924c27c36bf467da8d71501ca 116 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 106 2.5E-16 T 14-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Thimo_1574 8bf7ccd924c27c36bf467da8d71501ca 116 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 42 92 1.0E-7 T 14-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Thimo_1574 8bf7ccd924c27c36bf467da8d71501ca 116 Gene3D G3DSA:1.20.1290.10 1 114 1.4E-25 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Thimo_1574 8bf7ccd924c27c36bf467da8d71501ca 116 SUPERFAMILY SSF69118 11 111 3.53E-23 T 14-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 587 606 6.5E-25 T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 384 398 6.5E-25 T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 511 522 6.5E-25 T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 544 6.5E-25 T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 242 256 6.5E-25 T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 610 622 6.5E-25 T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Pfam PF00702 haloacid dehalogenase-like hydrolase 381 600 6.8E-34 T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 142 688 6.2E-151 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Gene3D G3DSA:3.40.1110.10 395 518 1.4E-79 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 ProSitePatterns PS01229 Hypothetical cof family signature 2. 587 609 - T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 170 662 2.6E-63 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 SUPERFAMILY SSF81653 195 291 1.83E-23 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Gene3D G3DSA:3.40.50.1000 365 639 1.4E-79 T 14-10-2018 IPR023214 HAD superfamily Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Gene3D G3DSA:2.70.150.20 186 296 1.3E-27 T 14-10-2018 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 SUPERFAMILY SSF56784 382 686 4.12E-47 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 386 392 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Thimo_2900 07ffc1c0ce14a4fbd0259b1c5b10ad6e 707 Pfam PF00122 E1-E2 ATPase 195 364 2.2E-33 T 14-10-2018 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 877 0.0 T 14-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 Gene3D G3DSA:1.25.50.10 557 878 3.7E-126 T 14-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 Gene3D G3DSA:2.60.40.1840 450 556 4.3E-29 T 14-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 450 556 8.0E-27 T 14-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 Gene3D G3DSA:1.10.1740.60 201 285 5.2E-40 T 14-10-2018 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 Pfam PF01433 Peptidase family M1 domain 214 445 9.2E-55 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 SUPERFAMILY SSF55486 210 456 1.19E-77 T 14-10-2018 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 182 197 2.0E-10 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 264 274 2.0E-10 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 132 147 2.0E-10 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 300 315 2.0E-10 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 319 331 2.0E-10 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 559 877 2.4E-130 T 14-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 Gene3D G3DSA:1.10.390.10 286 449 1.1E-62 T 14-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 Gene3D G3DSA:2.60.40.1730 16 200 6.9E-72 T 14-10-2018 Thimo_1660 4c96eea176a11d8ca843cf2d5d247d94 882 SUPERFAMILY SSF63737 4 199 5.49E-44 T 14-10-2018 Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 197 215 1.3E-40 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 267 285 1.3E-40 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 344 368 1.3E-40 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 154 168 1.3E-40 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 PRINTS PR01009 Flagellar M-ring protein signature 122 140 1.3E-40 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 Pfam PF08345 Flagellar M-ring protein C-terminal 254 420 3.1E-47 T 14-10-2018 IPR013556 Flagellar M-ring C-terminal Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 PIRSF PIRSF004862 6 555 5.7E-154 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 22 555 7.7E-106 T 14-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 Pfam PF01514 Secretory protein of YscJ/FliF family 31 221 1.8E-67 T 14-10-2018 IPR006182 Secretory protein YscJ/FliF Thimo_0270 e3c92cff508b074cd3a83fa859d64a30 555 Gene3D G3DSA:3.30.300.30 123 222 6.7E-10 T 14-10-2018 Thimo_1702 fea29b062a77f709150da46d967a56e6 73 Pfam PF10276 Zinc-finger domain 34 69 3.8E-9 T 14-10-2018 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1702 fea29b062a77f709150da46d967a56e6 73 Gene3D G3DSA:2.60.260.40 14 72 5.0E-11 T 14-10-2018 Thimo_2541 7c2739548976783ebd72a17ad248f342 142 SUPERFAMILY SSF46785 4 132 9.3E-44 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2541 7c2739548976783ebd72a17ad248f342 142 Gene3D G3DSA:3.30.1490.190 84 138 1.3E-23 T 14-10-2018 Thimo_2541 7c2739548976783ebd72a17ad248f342 142 Gene3D G3DSA:1.10.10.10 1 82 8.7E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2541 7c2739548976783ebd72a17ad248f342 142 Pfam PF01475 Ferric uptake regulator family 9 128 9.9E-45 T 14-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Thimo_3659 89961ed5c2699434bd6c28419ba723d0 290 Gene3D G3DSA:3.40.190.100 110 223 2.7E-87 T 14-10-2018 Thimo_3659 89961ed5c2699434bd6c28419ba723d0 290 Gene3D G3DSA:3.40.190.10 29 286 2.7E-87 T 14-10-2018 Thimo_3659 89961ed5c2699434bd6c28419ba723d0 290 SUPERFAMILY SSF53850 24 289 2.11E-77 T 14-10-2018 Thimo_3659 89961ed5c2699434bd6c28419ba723d0 290 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 276 2.5E-64 T 14-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Thimo_2648 b3f23be8f51179836de520e344109c05 271 Gene3D G3DSA:3.20.20.70 1 270 3.7E-103 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_2648 b3f23be8f51179836de520e344109c05 271 SUPERFAMILY SSF51366 1 263 2.54E-92 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Thimo_2648 b3f23be8f51179836de520e344109c05 271 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 264 35.21 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2648 b3f23be8f51179836de520e344109c05 271 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 14-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2648 b3f23be8f51179836de520e344109c05 271 Pfam PF00290 Tryptophan synthase alpha chain 8 263 2.4E-90 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2648 b3f23be8f51179836de520e344109c05 271 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 9 261 4.7E-78 T 14-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 372 392 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 Gene3D G3DSA:3.80.30.20 366 617 1.8E-11 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 SUPERFAMILY SSF102114 370 606 2.75E-9 T 14-10-2018 Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 Pfam PF04055 Radical SAM superfamily 372 577 9.6E-16 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 24 636 1.2E-253 T 14-10-2018 IPR022946 Uncharacterised protein family UPF0313 Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 23 638 49.602 T 14-10-2018 IPR022946 Uncharacterised protein family UPF0313 Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 SMART SM00729 368 619 2.3E-4 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 Pfam PF11842 Domain of unknown function (DUF3362) 586 686 1.4E-46 T 14-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal Thimo_0005 fb74d49cce10ad961c802bca17678de4 710 Pfam PF08497 Radical SAM N-terminal 24 371 5.3E-141 T 14-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal Thimo_2740 e91329431116f9b226c85276581e216a 308 Gene3D G3DSA:3.40.50.720 2 296 2.9E-54 T 14-10-2018 Thimo_2740 e91329431116f9b226c85276581e216a 308 Pfam PF13460 NAD(P)H-binding 7 160 7.1E-28 T 14-10-2018 IPR016040 NAD(P)-binding domain Thimo_2740 e91329431116f9b226c85276581e216a 308 SUPERFAMILY SSF51735 1 295 6.99E-54 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 SUPERFAMILY SSF54826 3 136 1.53E-52 T 14-10-2018 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 Pfam PF03952 Enolase, N-terminal domain 4 134 3.6E-56 T 14-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 PIRSF PIRSF001400 1 424 4.3E-181 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 423 4.0E-200 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 SMART SM01192 138 424 3.8E-215 T 14-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 37 51 2.6E-45 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 107 123 2.6E-45 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 160 173 2.6E-45 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 333 347 2.6E-45 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 310 321 2.6E-45 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 PRINTS PR00148 Enolase signature 362 379 2.6E-45 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 SMART SM01193 4 134 2.4E-87 T 14-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 Gene3D G3DSA:3.20.20.120 128 425 3.0E-125 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 Gene3D G3DSA:3.30.390.10 1 127 1.7E-53 T 14-10-2018 IPR029017 Enolase-like, N-terminal Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 Hamap MF_00318 Enolase [eno]. 2 410 43.829 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 SUPERFAMILY SSF51604 138 423 9.43E-124 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 Pfam PF00113 Enolase, C-terminal TIM barrel domain 139 423 6.4E-129 T 14-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_1323 5ef899cea999a84c35ad6c41f80d9cc1 425 ProSitePatterns PS00164 Enolase signature. 333 346 - T 14-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 Gene3D G3DSA:3.20.20.450 453 698 3.3E-45 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 SMART SM00052 450 695 6.1E-12 T 14-10-2018 IPR001633 EAL domain Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 SMART SM00267 261 435 0.0014 T 14-10-2018 IPR000160 GGDEF domain Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 Gene3D G3DSA:3.30.70.270 276 427 2.6E-13 T 14-10-2018 Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 SUPERFAMILY SSF55785 134 259 4.19E-9 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 Gene3D G3DSA:3.30.450.20 144 261 3.4E-8 T 14-10-2018 Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 SUPERFAMILY SSF55073 277 417 4.16E-10 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 Pfam PF00990 Diguanylate cyclase, GGDEF domain 277 414 1.2E-7 T 14-10-2018 IPR000160 GGDEF domain Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 SUPERFAMILY SSF141868 457 693 1.27E-40 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2224 634d4a7877ac060a12bd4cef2fb36ef4 699 Pfam PF00563 EAL domain 457 690 6.8E-39 T 14-10-2018 IPR001633 EAL domain Thimo_1478 55a536dc956e4cf4aadf4c427a0db38f 157 SUPERFAMILY SSF53155 6 75 1.79E-9 T 14-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Thimo_1478 55a536dc956e4cf4aadf4c427a0db38f 157 Gene3D G3DSA:1.10.10.10 69 155 1.5E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1478 55a536dc956e4cf4aadf4c427a0db38f 157 SUPERFAMILY SSF46767 69 153 2.88E-26 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Thimo_1478 55a536dc956e4cf4aadf4c427a0db38f 157 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 71 153 5.5E-28 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Thimo_1478 55a536dc956e4cf4aadf4c427a0db38f 157 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 70 151 1.5E-25 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Thimo_1478 55a536dc956e4cf4aadf4c427a0db38f 157 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 118 124 - T 14-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 Pfam PF03572 Peptidase family S41 228 382 5.0E-19 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 Pfam PF14684 Tricorn protease C1 domain 32 93 3.1E-11 T 14-10-2018 IPR028204 Tricorn protease C1 domain Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 Gene3D G3DSA:3.30.750.44 25 109 7.8E-9 T 14-10-2018 Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 SUPERFAMILY SSF52096 33 406 1.62E-46 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 SMART SM00228 126 191 2.3E-5 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 SUPERFAMILY SSF50156 125 199 6.57E-11 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 Gene3D G3DSA:2.30.42.10 128 202 1.3E-7 T 14-10-2018 Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 Gene3D G3DSA:3.90.226.10 208 409 7.5E-34 T 14-10-2018 Thimo_2245 776ba69e1b637ab5cfa5388ff9fc68f8 409 SMART SM00245 180 383 8.5E-8 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 368 531 8.9E-45 T 14-10-2018 IPR000160 GGDEF domain Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 SUPERFAMILY SSF55073 374 533 9.42E-43 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 Gene3D G3DSA:3.30.70.270 366 536 2.7E-51 T 14-10-2018 Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 SUPERFAMILY SSF55785 235 356 1.01E-10 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 SMART SM00267 358 532 3.9E-57 T 14-10-2018 IPR000160 GGDEF domain Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 Pfam PF00990 Diguanylate cyclase, GGDEF domain 369 528 1.4E-42 T 14-10-2018 IPR000160 GGDEF domain Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 245 363 1.7E-9 T 14-10-2018 IPR000014 PAS domain Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 Pfam PF13188 PAS domain 245 288 2.4E-6 T 14-10-2018 IPR000014 PAS domain Thimo_3255 65a06a90f7bfc242d173349cae9ba210 549 Gene3D G3DSA:3.30.450.20 234 363 1.9E-14 T 14-10-2018 Thimo_1386 d72cd3aff9c9558fafbdabcf9cf54ddd 147 SUPERFAMILY SSF52172 32 146 7.26E-25 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1386 d72cd3aff9c9558fafbdabcf9cf54ddd 147 SMART SM00448 32 144 2.7E-21 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1386 d72cd3aff9c9558fafbdabcf9cf54ddd 147 Gene3D G3DSA:3.40.50.2300 30 147 2.0E-24 T 14-10-2018 Thimo_1386 d72cd3aff9c9558fafbdabcf9cf54ddd 147 Pfam PF00072 Response regulator receiver domain 34 144 6.1E-16 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 14-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 Gene3D G3DSA:3.30.1340.10 1 88 4.7E-32 T 14-10-2018 IPR035895 HPr-like superfamily Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 SUPERFAMILY SSF55594 1 87 1.7E-28 T 14-10-2018 IPR035895 HPr-like superfamily Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 Pfam PF00381 PTS HPr component phosphorylation site 3 81 2.5E-28 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 8.8E-32 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 8.5E-17 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 8.5E-17 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 8.5E-17 T 14-10-2018 IPR000032 Phosphocarrier protein HPr-like Thimo_2767 6f96b7e3457b93cd66d5eea58f698d3a 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 14-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Thimo_1852 b00e8cb8681a4afc83ff0f55c9417808 359 ProSitePatterns PS01218 TatC family signature. 161 180 - T 14-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site Thimo_1852 b00e8cb8681a4afc83ff0f55c9417808 359 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 161 189 1.3E-49 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Thimo_1852 b00e8cb8681a4afc83ff0f55c9417808 359 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 15 42 1.3E-49 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Thimo_1852 b00e8cb8681a4afc83ff0f55c9417808 359 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 110 136 1.3E-49 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Thimo_1852 b00e8cb8681a4afc83ff0f55c9417808 359 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 92 110 1.3E-49 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Thimo_1852 b00e8cb8681a4afc83ff0f55c9417808 359 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 5 252 16.523 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Thimo_1852 b00e8cb8681a4afc83ff0f55c9417808 359 Pfam PF00902 Sec-independent protein translocase protein (TatC) 19 228 1.4E-65 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Thimo_1852 b00e8cb8681a4afc83ff0f55c9417808 359 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 17 233 7.5E-72 T 14-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Thimo_3322 69663b1458ca1f8e414d89eade0b5f22 460 Gene3D G3DSA:3.90.226.10 32 269 1.6E-61 T 14-10-2018 Thimo_3322 69663b1458ca1f8e414d89eade0b5f22 460 Pfam PF01957 NfeD-like C-terminal, partner-binding 317 453 9.0E-35 T 14-10-2018 IPR002810 NfeD-like, C-terminal domain Thimo_3322 69663b1458ca1f8e414d89eade0b5f22 460 SUPERFAMILY SSF141322 392 453 4.32E-10 T 14-10-2018 Thimo_3322 69663b1458ca1f8e414d89eade0b5f22 460 Gene3D G3DSA:2.40.50.140 394 459 1.2E-13 T 14-10-2018 Thimo_3322 69663b1458ca1f8e414d89eade0b5f22 460 SUPERFAMILY SSF52096 39 216 3.65E-27 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_1347 03b29a0938bbe1ca7e4a7bef512a91d6 247 SUPERFAMILY SSF53067 117 246 6.8E-24 T 14-10-2018 Thimo_1347 03b29a0938bbe1ca7e4a7bef512a91d6 247 Gene3D G3DSA:3.30.420.490 118 239 8.5E-68 T 14-10-2018 Thimo_1347 03b29a0938bbe1ca7e4a7bef512a91d6 247 SUPERFAMILY SSF53067 1 115 1.22E-25 T 14-10-2018 Thimo_1347 03b29a0938bbe1ca7e4a7bef512a91d6 247 Gene3D G3DSA:3.30.420.40 3 245 8.5E-68 T 14-10-2018 Thimo_1347 03b29a0938bbe1ca7e4a7bef512a91d6 247 Pfam PF03309 Type III pantothenate kinase 3 202 7.5E-43 T 14-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Thimo_1347 03b29a0938bbe1ca7e4a7bef512a91d6 247 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 245 1.9E-25 T 14-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Thimo_1347 03b29a0938bbe1ca7e4a7bef512a91d6 247 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 247 17.065 T 14-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Thimo_1135 8be3979977478703944f3aac7593748d 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.3E-20 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1135 8be3979977478703944f3aac7593748d 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1135 8be3979977478703944f3aac7593748d 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1135 8be3979977478703944f3aac7593748d 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.2E-8 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_1135 8be3979977478703944f3aac7593748d 307 Gene3D G3DSA:1.10.10.10 1 85 1.8E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1135 8be3979977478703944f3aac7593748d 307 Pfam PF03466 LysR substrate binding domain 87 297 3.9E-40 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_1135 8be3979977478703944f3aac7593748d 307 Gene3D G3DSA:3.40.190.10 161 268 3.8E-66 T 14-10-2018 Thimo_1135 8be3979977478703944f3aac7593748d 307 SUPERFAMILY SSF46785 1 87 3.5E-24 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1135 8be3979977478703944f3aac7593748d 307 Gene3D G3DSA:3.40.190.10 92 291 3.8E-66 T 14-10-2018 Thimo_1135 8be3979977478703944f3aac7593748d 307 SUPERFAMILY SSF53850 87 301 7.0E-40 T 14-10-2018 Thimo_1833 a9ba51a94be45e53869e15ca97e52b00 401 SUPERFAMILY SSF51161 291 396 3.53E-16 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_1833 a9ba51a94be45e53869e15ca97e52b00 401 Gene3D G3DSA:3.90.550.10 1 283 4.8E-52 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1833 a9ba51a94be45e53869e15ca97e52b00 401 Pfam PF00483 Nucleotidyl transferase 8 269 1.2E-26 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Thimo_1833 a9ba51a94be45e53869e15ca97e52b00 401 SUPERFAMILY SSF53448 5 355 3.33E-42 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1833 a9ba51a94be45e53869e15ca97e52b00 401 Gene3D G3DSA:2.160.10.10 284 400 4.4E-32 T 14-10-2018 Thimo_3658 a982ac3fbb7ce80c1d0d72b4cb57c1cb 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 272 5.0E-26 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_3658 a982ac3fbb7ce80c1d0d72b4cb57c1cb 305 SUPERFAMILY SSF161098 89 272 9.03E-39 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_3658 a982ac3fbb7ce80c1d0d72b4cb57c1cb 305 Gene3D G3DSA:1.10.3720.10 87 275 4.8E-33 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0210 5adde679216ffcf6bb02e101d74b8079 171 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 5 155 5.2E-36 T 14-10-2018 IPR011605 NusB antitermination factor GO:0006353 Thimo_0210 5adde679216ffcf6bb02e101d74b8079 171 SUPERFAMILY SSF48013 3 155 7.59E-34 T 14-10-2018 IPR035926 NusB-like superfamily Thimo_0210 5adde679216ffcf6bb02e101d74b8079 171 Pfam PF01029 NusB family 6 155 5.4E-30 T 14-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Thimo_0210 5adde679216ffcf6bb02e101d74b8079 171 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 3 158 20.218 T 14-10-2018 IPR011605 NusB antitermination factor GO:0006353 Thimo_0210 5adde679216ffcf6bb02e101d74b8079 171 Gene3D G3DSA:1.10.940.10 1 160 4.0E-38 T 14-10-2018 IPR035926 NusB-like superfamily Thimo_0125 f35d15a7f1c93635a5d36343e935f804 315 Pfam PF01569 PAP2 superfamily 102 218 3.0E-20 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Thimo_0125 f35d15a7f1c93635a5d36343e935f804 315 SUPERFAMILY SSF48317 58 219 1.3E-27 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Thimo_0125 f35d15a7f1c93635a5d36343e935f804 315 SMART SM00014 103 213 2.7E-9 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Thimo_0125 f35d15a7f1c93635a5d36343e935f804 315 Gene3D G3DSA:1.20.144.10 33 227 1.4E-18 T 14-10-2018 Thimo_0892 dc1442af18a3bec8b0469b05dbedf928 222 Pfam PF01695 IstB-like ATP binding protein 80 200 1.3E-17 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Thimo_0892 dc1442af18a3bec8b0469b05dbedf928 222 SUPERFAMILY SSF52540 46 203 6.07E-18 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0892 dc1442af18a3bec8b0469b05dbedf928 222 Gene3D G3DSA:3.40.50.300 26 210 3.1E-40 T 14-10-2018 Thimo_0892 dc1442af18a3bec8b0469b05dbedf928 222 SMART SM00382 78 205 1.9E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3558 99b7984d889bf206358943531c949cd1 225 SMART SM00862 146 221 4.2E-30 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3558 99b7984d889bf206358943531c949cd1 225 Gene3D G3DSA:1.10.10.10 126 224 1.3E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3558 99b7984d889bf206358943531c949cd1 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 1.3E-27 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3558 99b7984d889bf206358943531c949cd1 225 Gene3D G3DSA:3.40.50.2300 1 125 5.3E-32 T 14-10-2018 Thimo_3558 99b7984d889bf206358943531c949cd1 225 SMART SM00448 1 112 6.9E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3558 99b7984d889bf206358943531c949cd1 225 Pfam PF00072 Response regulator receiver domain 3 112 4.8E-22 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3558 99b7984d889bf206358943531c949cd1 225 SUPERFAMILY SSF52172 1 180 1.09E-31 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 Gene3D G3DSA:3.30.360.10 147 310 2.6E-126 T 14-10-2018 Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 SUPERFAMILY SSF55347 149 310 2.88E-47 T 14-10-2018 Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 336 43.5 T 14-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 14-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 342 7.5E-128 T 14-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 158 313 6.7E-17 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 141 9.6E-36 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 SMART SM00859 3 141 2.0E-62 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 SUPERFAMILY SSF51735 3 175 2.82E-56 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0075 713c1f2229d0d186f7538135247e6f33 342 Gene3D G3DSA:3.40.50.720 3 328 2.6E-126 T 14-10-2018 Thimo_1367 a3d84d1e51315e53bc7b5fa4cbc4feea 193 Pfam PF08750 CNP1-like family 43 178 2.2E-40 T 14-10-2018 IPR014861 Uncharacterised domain CNP1 Thimo_3472 13cb3c98dbf7dd12a94ab9d62d238df8 452 SUPERFAMILY SSF52540 56 213 3.04E-5 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2600 4681daa59f7c9f61a80a39d2bb86842b 484 Pfam PF00575 S1 RNA binding domain 38 112 6.6E-8 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_2600 4681daa59f7c9f61a80a39d2bb86842b 484 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 421 1.2E-156 T 14-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Thimo_2600 4681daa59f7c9f61a80a39d2bb86842b 484 SMART SM00316 37 114 2.0E-10 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_2600 4681daa59f7c9f61a80a39d2bb86842b 484 Gene3D G3DSA:3.40.1260.20 397 482 1.0E-5 T 14-10-2018 Thimo_2600 4681daa59f7c9f61a80a39d2bb86842b 484 Pfam PF10150 Ribonuclease E/G family 116 388 5.2E-102 T 14-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Thimo_2600 4681daa59f7c9f61a80a39d2bb86842b 484 Gene3D G3DSA:2.40.50.140 32 119 3.8E-29 T 14-10-2018 Thimo_2600 4681daa59f7c9f61a80a39d2bb86842b 484 SUPERFAMILY SSF50249 39 119 6.29E-20 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_0278 96b437d0f40c22219369e7ccd3d5fe10 123 SUPERFAMILY SSF101801 37 120 1.57E-24 T 14-10-2018 IPR036429 SpoA-like superfamily Thimo_0278 96b437d0f40c22219369e7ccd3d5fe10 123 Gene3D G3DSA:2.30.330.10 28 122 1.7E-34 T 14-10-2018 IPR036429 SpoA-like superfamily Thimo_0278 96b437d0f40c22219369e7ccd3d5fe10 123 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 42 111 8.4E-26 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) Thimo_0278 96b437d0f40c22219369e7ccd3d5fe10 123 PRINTS PR00956 Flagellar motor switch protein FliN signature 87 102 5.6E-28 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Thimo_0278 96b437d0f40c22219369e7ccd3d5fe10 123 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 87 5.6E-28 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Thimo_0278 96b437d0f40c22219369e7ccd3d5fe10 123 PRINTS PR00956 Flagellar motor switch protein FliN signature 58 74 5.6E-28 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Thimo_0278 96b437d0f40c22219369e7ccd3d5fe10 123 PRINTS PR00956 Flagellar motor switch protein FliN signature 41 57 5.6E-28 T 14-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Thimo_0278 96b437d0f40c22219369e7ccd3d5fe10 123 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 38 112 1.3E-31 T 14-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 SUPERFAMILY SSF52374 7 687 1.23E-141 T 14-10-2018 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Gene3D G3DSA:1.10.730.10 10 807 0.0 T 14-10-2018 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Gene3D G3DSA:3.90.740.10 229 440 0.0 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Pfam PF08264 Anticodon-binding domain of tRNA 716 836 1.4E-15 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Gene3D G3DSA:3.10.20.590 817 875 6.8E-21 T 14-10-2018 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 55 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Pfam PF09334 tRNA synthetases class I (M) 41 173 2.6E-19 T 14-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 6 875 22.722 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 7 875 0.0 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Gene3D G3DSA:3.40.50.620 35 586 0.0 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 223 429 8.5E-66 T 14-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 443 592 6.5E-7 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 639 677 2.7E-6 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 SUPERFAMILY SSF47323 683 875 1.08E-35 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 Gene3D G3DSA:3.10.330.110 587 649 0.0 T 14-10-2018 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 SUPERFAMILY SSF50677 228 441 3.01E-50 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 506 524 1.0E-50 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 217 236 1.0E-50 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 544 566 1.0E-50 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 155 171 1.0E-50 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 577 587 1.0E-50 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 187 200 1.0E-50 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_1084 2d78f35a2cf1e0c49d2cb887980ea6ec 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 129 146 1.0E-50 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Thimo_0415 f5df73e2c5790648818d967431942207 346 Pfam PF02685 Glucokinase 27 344 1.3E-104 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Thimo_0415 f5df73e2c5790648818d967431942207 346 Gene3D G3DSA:3.40.367.20 123 329 5.5E-112 T 14-10-2018 Thimo_0415 f5df73e2c5790648818d967431942207 346 Hamap MF_00524 Glucokinase [glk]. 25 346 32.578 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Thimo_0415 f5df73e2c5790648818d967431942207 346 TIGRFAM TIGR00749 glk: glucokinase 27 340 1.8E-82 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Thimo_0415 f5df73e2c5790648818d967431942207 346 SUPERFAMILY SSF53067 24 343 1.97E-60 T 14-10-2018 Thimo_0415 f5df73e2c5790648818d967431942207 346 Gene3D G3DSA:3.30.420.40 26 340 5.5E-112 T 14-10-2018 Thimo_2350 ab5ff08082d7d788837fdb6c634d6282 162 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 20 161 2.1E-42 T 14-10-2018 Thimo_2350 ab5ff08082d7d788837fdb6c634d6282 162 Gene3D G3DSA:1.10.10.1590 11 78 1.8E-14 T 14-10-2018 Thimo_2350 ab5ff08082d7d788837fdb6c634d6282 162 PIRSF PIRSF000216 1 162 4.7E-48 T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2350 ab5ff08082d7d788837fdb6c634d6282 162 Gene3D G3DSA:3.40.30.10 79 160 1.3E-21 T 14-10-2018 Thimo_2350 ab5ff08082d7d788837fdb6c634d6282 162 SUPERFAMILY SSF52833 13 161 2.8E-45 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 SUPERFAMILY SSF50156 491 581 7.76E-12 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 Gene3D G3DSA:2.30.42.10 496 599 3.0E-15 T 14-10-2018 Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 SMART SM00228 496 565 1.3E-5 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 Pfam PF05299 M61 glycyl aminopeptidase 275 391 1.6E-46 T 14-10-2018 IPR007963 Peptidase M61, catalytic domain Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 PIRSF PIRSF016493 3 603 6.1E-207 T 14-10-2018 IPR024191 Peptidase M61 Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 SUPERFAMILY SSF55486 190 422 6.52E-11 T 14-10-2018 Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 Gene3D G3DSA:1.10.390.60 182 455 2.5E-105 T 14-10-2018 Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 Pfam PF13180 PDZ domain 498 572 7.9E-8 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0105 0e9cc6b481cf35a4f1979f5413b978d0 609 Gene3D G3DSA:2.60.40.3650 6 181 1.5E-57 T 14-10-2018 Thimo_1227 e62128ff4053b2e0a11eebe5e1990dae 249 SUPERFAMILY SSF52402 21 242 6.16E-47 T 14-10-2018 Thimo_1227 e62128ff4053b2e0a11eebe5e1990dae 249 Gene3D G3DSA:3.40.50.620 10 247 2.1E-47 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1227 e62128ff4053b2e0a11eebe5e1990dae 249 Pfam PF01171 PP-loop family 35 203 2.3E-15 T 14-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Thimo_1227 e62128ff4053b2e0a11eebe5e1990dae 249 PIRSF PIRSF004976 4 247 1.9E-55 T 14-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 Thimo_2507 1b9016a4af6debd15ffa2e64148228ac 239 SUPERFAMILY SSF52540 3 223 4.64E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2507 1b9016a4af6debd15ffa2e64148228ac 239 Gene3D G3DSA:3.40.50.300 1 233 1.3E-52 T 14-10-2018 Thimo_2507 1b9016a4af6debd15ffa2e64148228ac 239 Pfam PF00005 ABC transporter 24 178 1.1E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2507 1b9016a4af6debd15ffa2e64148228ac 239 SMART SM00382 29 226 2.1E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3546 88d43bacb54cc46ce8772cfdf7ca29a5 160 Gene3D G3DSA:1.20.120.50 19 156 6.1E-25 T 14-10-2018 IPR035938 Hemerythrin-like superfamily Thimo_3546 88d43bacb54cc46ce8772cfdf7ca29a5 160 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 26 152 8.2E-23 T 14-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Thimo_3546 88d43bacb54cc46ce8772cfdf7ca29a5 160 ProSitePatterns PS00550 Hemerythrin family signature. 78 101 - T 14-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Thimo_3546 88d43bacb54cc46ce8772cfdf7ca29a5 160 Pfam PF01814 Hemerythrin HHE cation binding domain 36 119 3.3E-8 T 14-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Thimo_3546 88d43bacb54cc46ce8772cfdf7ca29a5 160 SUPERFAMILY SSF47188 22 152 1.96E-23 T 14-10-2018 IPR035938 Hemerythrin-like superfamily Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:1.10.288.10 962 1120 9.1E-134 T 14-10-2018 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:3.10.196.10 952 1251 9.1E-134 T 14-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF00809 Pterin binding enzyme 361 599 1.3E-58 T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:3.20.20.330 2 339 1.2E-126 T 14-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF51717 357 631 2.09E-88 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:3.40.50.280 745 896 2.3E-54 T 14-10-2018 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 TIGRFAM TIGR02082 metH: methionine synthase 14 1220 0.0 T 14-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 SMART SM01018 657 740 2.8E-45 T 14-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 964 1236 4.7E-123 T 14-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF02607 B12 binding domain 659 732 6.8E-26 T 14-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF47644 652 739 2.09E-28 T 14-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF02310 B12 binding domain 749 841 8.1E-20 T 14-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Pfam PF02574 Homocysteine S-methyltransferase 18 326 5.5E-80 T 14-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF56507 945 1255 9.81E-126 T 14-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:3.20.20.20 341 643 4.5E-130 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF82282 8 400 3.14E-117 T 14-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 PIRSF PIRSF000381 2 1223 0.0 T 14-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 Gene3D G3DSA:1.10.1240.10 649 737 1.4E-39 T 14-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0495 f45fc10d92a7858b6e58eb263b9934cf 1255 SUPERFAMILY SSF52242 743 895 1.18E-45 T 14-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Thimo_2694 fcdff0acb590473cb4cb581ca1bef482 317 SUPERFAMILY SSF101478 11 282 2.75E-66 T 14-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily Thimo_2694 fcdff0acb590473cb4cb581ca1bef482 317 Gene3D G3DSA:1.10.4080.10 4 283 9.4E-72 T 14-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily Thimo_2694 fcdff0acb590473cb4cb581ca1bef482 317 Pfam PF03747 ADP-ribosylglycohydrolase 13 274 1.1E-56 T 14-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 100 118 - T 14-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 92 106 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 458 479 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 68 83 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 144 159 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 170 191 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 483 508 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 194 216 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 321 338 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01180 Arginine decarboxylase signature 537 558 1.5E-66 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 SUPERFAMILY SSF50621 454 556 2.16E-6 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 Gene3D G3DSA:1.20.58.930 363 454 2.0E-214 T 14-10-2018 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 275 288 - T 14-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 237 250 8.5E-16 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 537 550 8.5E-16 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 331 350 8.5E-16 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 100 118 8.5E-16 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 121 133 8.5E-16 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 TIGRFAM TIGR01273 speA: arginine decarboxylase 8 629 7.0E-230 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 SUPERFAMILY SSF51419 69 343 2.06E-64 T 14-10-2018 IPR029066 PLP-binding barrel Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 Gene3D G3DSA:3.20.20.10 69 346 2.0E-214 T 14-10-2018 IPR029066 PLP-binding barrel Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 Gene3D G3DSA:2.40.37.10 12 562 2.0E-214 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 79 341 1.4E-46 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Thimo_2563 367b24c6db6217231ebcdc2221f13dad 630 PIRSF PIRSF001336 3 630 1.7E-223 T 14-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 Thimo_0086 9bb63fd09315cc84cb2df564878b484f 171 Pfam PF04351 Pilus assembly protein, PilP 26 169 7.2E-52 T 14-10-2018 IPR007446 Pilus assembly protein PilP Thimo_0086 9bb63fd09315cc84cb2df564878b484f 171 Gene3D G3DSA:2.30.30.830 77 170 1.6E-33 T 14-10-2018 Thimo_0086 9bb63fd09315cc84cb2df564878b484f 171 PIRSF PIRSF016481 2 171 1.5E-47 T 14-10-2018 IPR007446 Pilus assembly protein PilP Thimo_1724 332369fe738588e34adf2bdaa720762e 221 Gene3D G3DSA:3.40.50.2300 1 122 1.0E-38 T 14-10-2018 Thimo_1724 332369fe738588e34adf2bdaa720762e 221 SMART SM00862 145 216 5.4E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_1724 332369fe738588e34adf2bdaa720762e 221 SUPERFAMILY SSF52172 1 176 3.84E-36 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1724 332369fe738588e34adf2bdaa720762e 221 SMART SM00448 1 112 1.2E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1724 332369fe738588e34adf2bdaa720762e 221 Gene3D G3DSA:1.10.10.10 128 221 1.4E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1724 332369fe738588e34adf2bdaa720762e 221 Pfam PF00072 Response regulator receiver domain 3 112 7.1E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1724 332369fe738588e34adf2bdaa720762e 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 215 2.9E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3714 b595a5a84b3f8ccd9205d297d7f5dfab 415 Gene3D G3DSA:3.90.1150.10 15 410 8.3E-96 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_3714 b595a5a84b3f8ccd9205d297d7f5dfab 415 SUPERFAMILY SSF53383 16 414 5.96E-98 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_3714 b595a5a84b3f8ccd9205d297d7f5dfab 415 Gene3D G3DSA:3.40.640.10 60 318 8.3E-96 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_3714 b595a5a84b3f8ccd9205d297d7f5dfab 415 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_3714 b595a5a84b3f8ccd9205d297d7f5dfab 415 PIRSF PIRSF000521 127 415 9.9E-31 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_3714 b595a5a84b3f8ccd9205d297d7f5dfab 415 PIRSF PIRSF000521 22 137 0.0081 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_3714 b595a5a84b3f8ccd9205d297d7f5dfab 415 Pfam PF00202 Aminotransferase class-III 26 414 3.8E-70 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_1637 5c5b56a49fa0212c6a0778df6af8b912 98 Gene3D G3DSA:3.30.70.100 2 98 3.9E-27 T 14-10-2018 Thimo_1637 5c5b56a49fa0212c6a0778df6af8b912 98 Pfam PF00708 Acylphosphatase 15 95 9.4E-22 T 14-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Thimo_1637 5c5b56a49fa0212c6a0778df6af8b912 98 ProSitePatterns PS00150 Acylphosphatase signature 1. 18 28 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Thimo_1637 5c5b56a49fa0212c6a0778df6af8b912 98 SUPERFAMILY SSF54975 9 96 6.76E-25 T 14-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Thimo_1637 5c5b56a49fa0212c6a0778df6af8b912 98 ProSitePatterns PS00151 Acylphosphatase signature 2. 42 58 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Thimo_0134 b37e961801d0f1cb7e1fe29ff4292fe4 276 SUPERFAMILY SSF51735 103 272 3.58E-41 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0134 b37e961801d0f1cb7e1fe29ff4292fe4 276 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 273 33.012 T 14-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Thimo_0134 b37e961801d0f1cb7e1fe29ff4292fe4 276 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 118 165 3.6E-9 T 14-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Thimo_0134 b37e961801d0f1cb7e1fe29ff4292fe4 276 Gene3D G3DSA:3.40.50.720 103 248 1.8E-80 T 14-10-2018 Thimo_0134 b37e961801d0f1cb7e1fe29ff4292fe4 276 Gene3D G3DSA:3.40.50.10860 6 258 1.8E-80 T 14-10-2018 Thimo_0134 b37e961801d0f1cb7e1fe29ff4292fe4 276 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 5 272 1.8E-79 T 14-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Thimo_0134 b37e961801d0f1cb7e1fe29ff4292fe4 276 SUPERFAMILY SSF53223 3 102 5.76E-32 T 14-10-2018 Thimo_0134 b37e961801d0f1cb7e1fe29ff4292fe4 276 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 1.2E-23 T 14-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Thimo_3608 717092439c6f620d254dfa91a4f1c335 310 Gene3D G3DSA:3.40.50.2020 17 150 3.5E-60 T 14-10-2018 Thimo_3608 717092439c6f620d254dfa91a4f1c335 310 Pfam PF00156 Phosphoribosyl transferase domain 151 252 9.0E-10 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Thimo_3608 717092439c6f620d254dfa91a4f1c335 310 SUPERFAMILY SSF53271 167 293 1.84E-26 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_3608 717092439c6f620d254dfa91a4f1c335 310 Gene3D G3DSA:3.40.50.2020 151 277 3.5E-60 T 14-10-2018 Thimo_3608 717092439c6f620d254dfa91a4f1c335 310 SMART SM01400 7 121 2.6E-23 T 14-10-2018 Thimo_3608 717092439c6f620d254dfa91a4f1c335 310 SUPERFAMILY SSF53271 12 159 1.26E-26 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_3608 717092439c6f620d254dfa91a4f1c335 310 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 17 118 5.6E-14 T 14-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Thimo_3608 717092439c6f620d254dfa91a4f1c335 310 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 16 296 1.4E-48 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Thimo_2547 b9908be73009ee20ca193409ddcd0a03 275 Gene3D G3DSA:3.20.20.20 4 275 1.3E-108 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_2547 b9908be73009ee20ca193409ddcd0a03 275 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 19 272 1.2E-99 T 14-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 Thimo_2547 b9908be73009ee20ca193409ddcd0a03 275 SUPERFAMILY SSF51717 10 272 6.67E-105 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_2547 b9908be73009ee20ca193409ddcd0a03 275 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 53 66 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_2547 b9908be73009ee20ca193409ddcd0a03 275 Pfam PF00809 Pterin binding enzyme 20 259 3.7E-86 T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_2547 b9908be73009ee20ca193409ddcd0a03 275 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 19 34 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_1064 43919e965849b88c7d928db5db533729 268 Gene3D G3DSA:3.30.540.10 2 141 5.8E-52 T 14-10-2018 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR01959 SuhB family inositol monophosphatase signature 105 124 2.1E-30 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR01959 SuhB family inositol monophosphatase signature 157 183 2.1E-30 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR01959 SuhB family inositol monophosphatase signature 199 211 2.1E-30 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR01959 SuhB family inositol monophosphatase signature 20 42 2.1E-30 T 14-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Thimo_1064 43919e965849b88c7d928db5db533729 268 Pfam PF00459 Inositol monophosphatase family 4 256 1.0E-69 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Thimo_1064 43919e965849b88c7d928db5db533729 268 Gene3D G3DSA:3.40.190.80 143 266 1.9E-35 T 14-10-2018 Thimo_1064 43919e965849b88c7d928db5db533729 268 SUPERFAMILY SSF56655 4 263 1.22E-87 T 14-10-2018 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 41 61 6.7E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 131 154 6.7E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 6.7E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 6.7E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 63 79 6.7E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Thimo_1064 43919e965849b88c7d928db5db533729 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 82 98 6.7E-59 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Thimo_1064 43919e965849b88c7d928db5db533729 268 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 212 226 - T 14-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 Thimo_1064 43919e965849b88c7d928db5db533729 268 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 82 95 - T 14-10-2018 IPR020583 Inositol monophosphatase, metal-binding site Thimo_0508 44691105e04bb59c1568964227405efb 192 SUPERFAMILY SSF89550 3 172 1.44E-15 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Thimo_0508 44691105e04bb59c1568964227405efb 192 Gene3D G3DSA:3.20.20.140 1 190 1.1E-14 T 14-10-2018 Thimo_2231 2263b2c49a4449cc7f655655bc84139c 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 302 1.0E-15 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_2231 2263b2c49a4449cc7f655655bc84139c 390 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 160 379 5.1E-32 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_2231 2263b2c49a4449cc7f655655bc84139c 390 Gene3D G3DSA:2.40.50.100 53 223 2.0E-47 T 14-10-2018 Thimo_2231 2263b2c49a4449cc7f655655bc84139c 390 Gene3D G3DSA:1.10.287.470 87 186 2.0E-47 T 14-10-2018 Thimo_2231 2263b2c49a4449cc7f655655bc84139c 390 SUPERFAMILY SSF111369 153 306 1.7E-6 T 14-10-2018 Thimo_2231 2263b2c49a4449cc7f655655bc84139c 390 Gene3D G3DSA:2.40.30.170 40 311 2.0E-47 T 14-10-2018 Thimo_2231 2263b2c49a4449cc7f655655bc84139c 390 Gene3D G3DSA:2.40.420.20 39 370 2.0E-47 T 14-10-2018 Thimo_2231 2263b2c49a4449cc7f655655bc84139c 390 SUPERFAMILY SSF111369 42 115 3.53E-6 T 14-10-2018 Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 19 675 0.0 T 14-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 SUPERFAMILY SSF52540 50 592 4.13E-36 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 SUPERFAMILY SSF46600 632 675 3.14E-11 T 14-10-2018 IPR036876 UVR domain superfamily Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Gene3D G3DSA:4.10.860.10 637 681 4.3E-17 T 14-10-2018 Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Gene3D G3DSA:3.40.50.300 9 249 4.2E-71 T 14-10-2018 Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Pfam PF04851 Type III restriction enzyme, res subunit 29 151 1.7E-8 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Pfam PF12344 Ultra-violet resistance protein B 564 605 5.9E-22 T 14-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Gene3D G3DSA:3.40.50.300 289 426 2.4E-52 T 14-10-2018 Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 SUPERFAMILY SSF52540 16 427 5.36E-135 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Hamap MF_00204 UvrABC system protein B [uvrB]. 16 677 43.159 T 14-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Pfam PF00271 Helicase conserved C-terminal domain 454 557 1.9E-16 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 SMART SM00490 472 558 1.0E-19 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Gene3D G3DSA:3.40.50.300 427 608 2.3E-48 T 14-10-2018 Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 SMART SM00487 22 438 1.8E-27 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1819 7fb0cf10ee28b839eb76fbadf67a3dfe 681 Pfam PF02151 UvrB/uvrC motif 643 675 2.2E-9 T 14-10-2018 IPR001943 UVR domain GO:0005515 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 1.2E-166 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 1.8E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 1.8E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 1.8E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 1.8E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 1.8E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 Gene3D G3DSA:3.30.930.10 105 424 2.2E-120 T 14-10-2018 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 SUPERFAMILY SSF46589 1 112 8.89E-29 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 40.978 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 PIRSF PIRSF001529 1 424 2.2E-174 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 219 400 2.7E-33 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 Gene3D G3DSA:1.10.287.40 1 104 6.7E-21 T 14-10-2018 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.7E-28 T 14-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 Thimo_2330 1a12194f2d9a6e26f7c4443785b62425 424 SUPERFAMILY SSF55681 116 418 1.66E-99 T 14-10-2018 Thimo_0332 4c9d68bb05d2e44f8801f43c700b75e6 375 Gene3D G3DSA:3.90.550.10 6 241 1.8E-42 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0332 4c9d68bb05d2e44f8801f43c700b75e6 375 Pfam PF04138 GtrA-like protein 253 369 3.3E-17 T 14-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 Thimo_0332 4c9d68bb05d2e44f8801f43c700b75e6 375 SUPERFAMILY SSF53448 9 182 1.15E-37 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0332 4c9d68bb05d2e44f8801f43c700b75e6 375 Pfam PF00535 Glycosyl transferase family 2 17 181 2.9E-32 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Thimo_0688 263ac8e0660eeb6d307b8677b0c7546a 240 Pfam PF01987 Mitochondrial biogenesis AIM24 16 222 1.4E-63 T 14-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Thimo_0688 263ac8e0660eeb6d307b8677b0c7546a 240 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 15 238 8.6E-55 T 14-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Thimo_0688 263ac8e0660eeb6d307b8677b0c7546a 240 SUPERFAMILY SSF51219 15 239 7.85E-68 T 14-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily Thimo_0688 263ac8e0660eeb6d307b8677b0c7546a 240 Gene3D G3DSA:3.60.160.10 9 240 1.4E-78 T 14-10-2018 IPR036983 Mitochondrial biogenesis AIM24 superfamily Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 SUPERFAMILY SSF55073 342 493 1.59E-42 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 SUPERFAMILY SSF55785 202 324 1.43E-28 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 SMART SM00091 88 156 1.3E-6 T 14-10-2018 IPR000014 PAS domain Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 SMART SM00091 213 279 4.6E-7 T 14-10-2018 IPR000014 PAS domain Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 217 333 1.3E-18 T 14-10-2018 IPR000014 PAS domain Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 89 212 7.9E-16 T 14-10-2018 IPR000014 PAS domain Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 SMART SM00086 163 205 3.0E-12 T 14-10-2018 IPR001610 PAC motif Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 SMART SM00086 285 326 6.5 T 14-10-2018 IPR001610 PAC motif Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 333 493 9.0E-44 T 14-10-2018 IPR000160 GGDEF domain Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 Pfam PF08447 PAS fold 111 199 5.4E-23 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 Gene3D G3DSA:3.30.70.270 323 496 8.4E-54 T 14-10-2018 Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 Pfam PF00990 Diguanylate cyclase, GGDEF domain 337 492 1.5E-45 T 14-10-2018 IPR000160 GGDEF domain Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 SUPERFAMILY SSF55785 93 207 3.7E-29 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 Gene3D G3DSA:3.30.450.20 85 196 1.9E-29 T 14-10-2018 Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 Pfam PF13426 PAS domain 224 324 1.3E-14 T 14-10-2018 IPR000014 PAS domain Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 Gene3D G3DSA:3.30.450.20 197 320 1.1E-33 T 14-10-2018 Thimo_3304 dc3d9432bedb6cf803a03329e8970088 518 SMART SM00267 326 498 2.6E-56 T 14-10-2018 IPR000160 GGDEF domain Thimo_3647 0614d1804ac0bb6ac648c8f3d5afd571 468 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 37 442 3.2E-104 T 14-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Thimo_3647 0614d1804ac0bb6ac648c8f3d5afd571 468 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 55 62 - T 14-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Thimo_3647 0614d1804ac0bb6ac648c8f3d5afd571 468 Gene3D G3DSA:3.40.50.1980 24 177 5.3E-51 T 14-10-2018 Thimo_3647 0614d1804ac0bb6ac648c8f3d5afd571 468 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 122 136 - T 14-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Thimo_3647 0614d1804ac0bb6ac648c8f3d5afd571 468 Gene3D G3DSA:3.40.50.12380 178 450 4.9E-116 T 14-10-2018 Thimo_3647 0614d1804ac0bb6ac648c8f3d5afd571 468 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 3 456 2.6E-210 T 14-10-2018 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0009399|GO:0065003 Thimo_3647 0614d1804ac0bb6ac648c8f3d5afd571 468 SUPERFAMILY SSF53807 17 457 6.17E-131 T 14-10-2018 Thimo_3783 be21c2fdf3a7bb0f72730757b14442b8 714 Gene3D G3DSA:3.40.50.300 185 379 1.6E-20 T 14-10-2018 Thimo_3783 be21c2fdf3a7bb0f72730757b14442b8 714 Gene3D G3DSA:3.40.50.300 459 640 6.1E-15 T 14-10-2018 Thimo_3783 be21c2fdf3a7bb0f72730757b14442b8 714 SUPERFAMILY SSF52540 186 624 9.37E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3783 be21c2fdf3a7bb0f72730757b14442b8 714 Pfam PF13538 UvrD-like helicase C-terminal domain 569 618 1.4E-11 T 14-10-2018 IPR027785 UvrD-like helicase C-terminal domain Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 164 276 4.6E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 717 809 4.1E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 277 382 2.2E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Pfam PF13181 Tetratricopeptide repeat 769 794 0.15 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 511 658 3.5E-23 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 11 163 4.9E-29 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 664 716 3.0E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SUPERFAMILY SSF48452 440 792 7.97E-34 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SUPERFAMILY SSF48452 333 481 3.37E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 197 230 45.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 423 456 0.23 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 525 558 460.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 593 626 0.1 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 336 369 37.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 163 196 24.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 766 799 66.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 95 128 120.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 627 660 140.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 129 162 0.23 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 732 765 80.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 661 694 330.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 61 94 5.4E-4 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 457 490 480.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 27 60 0.087 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SMART SM00028 559 592 30.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 304 369 7.1E-5 T 14-10-2018 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 135 196 1.5E-6 T 14-10-2018 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 208 264 0.0016 T 14-10-2018 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 404 457 5.6E-6 T 14-10-2018 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 567 627 8.9E-9 T 14-10-2018 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Pfam PF13432 Tetratricopeptide repeat 31 95 3.0E-8 T 14-10-2018 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 Gene3D G3DSA:1.25.40.10 399 510 1.1E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3092 14573ede207472f596a92b25aa9e1855 812 SUPERFAMILY SSF81901 30 259 1.1E-27 T 14-10-2018 Thimo_0255 b9d3158754175227c6ebcc110c27d425 344 Pfam PF13183 4Fe-4S dicluster domain 216 300 2.4E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0255 b9d3158754175227c6ebcc110c27d425 344 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 286 297 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0255 b9d3158754175227c6ebcc110c27d425 344 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 81 185 5.0E-6 T 14-10-2018 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal Thimo_0255 b9d3158754175227c6ebcc110c27d425 344 SUPERFAMILY SSF46548 206 305 2.49E-13 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_2956 dacf156331cec33fda4691c55a34ea13 87 Gene3D G3DSA:3.30.1360.20 1 83 6.5E-29 T 14-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Thimo_2956 dacf156331cec33fda4691c55a34ea13 87 SUPERFAMILY SSF55248 4 80 4.05E-12 T 14-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Thimo_2956 dacf156331cec33fda4691c55a34ea13 87 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 3 80 3.6E-7 T 14-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 157 272 8.3E-13 T 14-10-2018 IPR000014 PAS domain Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 SUPERFAMILY SSF52172 5 156 2.85E-33 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 Gene3D G3DSA:3.30.450.20 145 272 6.7E-22 T 14-10-2018 Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 SMART SM00086 232 274 4.1E-5 T 14-10-2018 IPR001610 PAC motif Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 Pfam PF00072 Response regulator receiver domain 10 123 1.7E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 SUPERFAMILY SSF55785 147 272 7.89E-20 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 SMART SM00448 7 123 4.7E-33 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 Gene3D G3DSA:3.40.50.2300 2 144 5.3E-32 T 14-10-2018 Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 Pfam PF13426 PAS domain 168 272 9.6E-14 T 14-10-2018 IPR000014 PAS domain Thimo_0094 1f39fccc2005833e5e5c3e780019b4bb 299 SMART SM00091 156 222 3.3E-10 T 14-10-2018 IPR000014 PAS domain Thimo_3027 a85fbcddcdf8ab32ef06606d6dc70247 224 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 175 6.3E-47 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Thimo_3027 a85fbcddcdf8ab32ef06606d6dc70247 224 PIRSF PIRSF006755 1 218 2.0E-69 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Thimo_3027 a85fbcddcdf8ab32ef06606d6dc70247 224 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 208 27.966 T 14-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Thimo_3027 a85fbcddcdf8ab32ef06606d6dc70247 224 Gene3D G3DSA:3.40.50.300 2 216 1.3E-67 T 14-10-2018 Thimo_3027 a85fbcddcdf8ab32ef06606d6dc70247 224 SUPERFAMILY SSF52540 3 209 1.0E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3027 a85fbcddcdf8ab32ef06606d6dc70247 224 Pfam PF13500 AAA domain 3 206 8.5E-41 T 14-10-2018 Thimo_3565 8979642d95492b611783976cb2df8ace 199 Gene3D G3DSA:2.40.440.10 20 195 5.9E-29 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_3565 8979642d95492b611783976cb2df8ace 199 SUPERFAMILY SSF141523 67 180 3.14E-26 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_3565 8979642d95492b611783976cb2df8ace 199 Pfam PF03734 L,D-transpeptidase catalytic domain 69 180 8.1E-20 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 33 48 1.2E-51 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 125 144 1.2E-51 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 182 201 1.2E-51 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 73 93 1.2E-51 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 PRINTS PR00127 Clp protease catalytic subunit P signature 104 121 1.2E-51 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 126 139 - T 14-10-2018 IPR033135 ClpP, histidine active site Thimo_0430 c197d9e774af3e71de2f10825add9473 214 SUPERFAMILY SSF52096 25 208 8.7E-75 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_0430 c197d9e774af3e71de2f10825add9473 214 Gene3D G3DSA:3.90.226.10 6 211 2.2E-82 T 14-10-2018 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 17 207 44.252 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 Pfam PF00574 Clp protease 27 206 5.0E-86 T 14-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Thimo_0430 c197d9e774af3e71de2f10825add9473 214 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 16 205 9.1E-103 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Thimo_0430 c197d9e774af3e71de2f10825add9473 214 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 104 115 - T 14-10-2018 IPR018215 ClpP, Ser active site Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 Gene3D G3DSA:3.20.20.70 220 527 3.2E-145 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 Pfam PF00117 Glutamine amidotransferase class-I 4 198 1.0E-18 T 14-10-2018 IPR017926 Glutamine amidotransferase Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 SUPERFAMILY SSF51366 217 526 1.18E-68 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 218 526 3.3E-97 T 14-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 201 34.403 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 SUPERFAMILY SSF52317 2 200 3.93E-54 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 Gene3D G3DSA:3.40.50.880 1 212 2.8E-73 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 PIRSF PIRSF036936 1 527 3.8E-251 T 14-10-2018 IPR014640 Imidazole glycerol phosphate synthase HisHF GO:0000105|GO:0000107|GO:0016763|GO:0016833 Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 199 1.9E-62 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Thimo_1857 6a8484e17ba41eb0823d5803e9156410 527 Pfam PF00977 Histidine biosynthesis protein 221 509 6.3E-52 T 14-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Thimo_2433 07d580a4bc51043049bcce1d6ad7eafa 93 Pfam PF05899 Protein of unknown function (DUF861) 19 90 5.7E-28 T 14-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Thimo_2433 07d580a4bc51043049bcce1d6ad7eafa 93 SUPERFAMILY SSF51182 16 90 2.3E-17 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Thimo_2433 07d580a4bc51043049bcce1d6ad7eafa 93 Gene3D G3DSA:2.60.120.10 1 92 6.8E-34 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_0871 fda35d4069d5e7075dd573b4456ff7d1 79 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 43 1.3E-11 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_0871 fda35d4069d5e7075dd573b4456ff7d1 79 Gene3D G3DSA:3.40.1620.10 1 39 6.9E-13 T 14-10-2018 Thimo_0871 fda35d4069d5e7075dd573b4456ff7d1 79 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 6 39 5.1E-11 T 14-10-2018 Thimo_0871 fda35d4069d5e7075dd573b4456ff7d1 79 SUPERFAMILY SSF143120 4 47 8.37E-10 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_2501 a828bbc78714d241aa846d48df04d038 359 Gene3D G3DSA:3.40.50.300 4 208 3.5E-58 T 14-10-2018 Thimo_2501 a828bbc78714d241aa846d48df04d038 359 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 186 6.0E-44 T 14-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Thimo_2501 a828bbc78714d241aa846d48df04d038 359 SUPERFAMILY SSF52540 6 209 6.04E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2501 a828bbc78714d241aa846d48df04d038 359 SUPERFAMILY SSF90002 260 354 2.09E-21 T 14-10-2018 Thimo_2501 a828bbc78714d241aa846d48df04d038 359 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 260 354 1.0E-20 T 14-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Thimo_2501 a828bbc78714d241aa846d48df04d038 359 SMART SM00833 260 354 6.9E-23 T 14-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Thimo_2501 a828bbc78714d241aa846d48df04d038 359 Gene3D G3DSA:3.30.1220.10 241 353 1.9E-24 T 14-10-2018 IPR036627 CobW-like, C-terminal domain superfamily Thimo_1138 ab83dd8eef79cd6d0d4b9518122488f8 162 TIGRFAM TIGR00077 lspA: signal peptidase II 3 158 1.1E-37 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Thimo_1138 ab83dd8eef79cd6d0d4b9518122488f8 162 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 1 161 16.699 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Thimo_1138 ab83dd8eef79cd6d0d4b9518122488f8 162 ProSitePatterns PS00855 Signal peptidases II signature. 97 109 - T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Thimo_1138 ab83dd8eef79cd6d0d4b9518122488f8 162 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 94 109 3.5E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Thimo_1138 ab83dd8eef79cd6d0d4b9518122488f8 162 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 46 54 3.5E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Thimo_1138 ab83dd8eef79cd6d0d4b9518122488f8 162 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 136 152 3.5E-18 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Thimo_1138 ab83dd8eef79cd6d0d4b9518122488f8 162 Pfam PF01252 Signal peptidase (SPase) II 9 155 5.0E-39 T 14-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 SUPERFAMILY SSF55920 3 249 3.93E-96 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 Hamap MF_01974 Methionine aminopeptidase [map]. 1 248 43.177 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 2.5E-102 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 Gene3D G3DSA:3.90.230.10 1 256 4.2E-115 T 14-10-2018 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 Pfam PF00557 Metallopeptidase family M24 11 239 9.9E-57 T 14-10-2018 IPR000994 Peptidase M24 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 1.1E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 1.1E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 1.1E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Thimo_0718 95f3c1050fc37c75bb4762a49b23eb5e 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 1.1E-22 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Thimo_0182 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 82 95 6.8E-17 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Thimo_0182 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 113 6.8E-17 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Thimo_0182 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 114 127 6.8E-17 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Thimo_0182 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 153 8.8E-55 T 14-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Thimo_0182 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 SUPERFAMILY SSF51230 78 153 3.27E-24 T 14-10-2018 IPR011053 Single hybrid motif Thimo_0182 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 Pfam PF00364 Biotin-requiring enzyme 80 152 1.6E-22 T 14-10-2018 IPR000089 Biotin/lipoyl attachment Thimo_0182 c98ea1c4dfb33cbab5ba0ce828f79dd8 153 Gene3D G3DSA:2.40.50.100 76 153 3.0E-30 T 14-10-2018 Thimo_1630 6941e5e1a998fac9ad785497049ce569 183 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 6 143 1.3E-17 T 14-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Thimo_1630 6941e5e1a998fac9ad785497049ce569 183 Pfam PF01814 Hemerythrin HHE cation binding domain 14 143 1.7E-6 T 14-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Thimo_1630 6941e5e1a998fac9ad785497049ce569 183 SUPERFAMILY SSF47188 5 141 1.44E-21 T 14-10-2018 IPR035938 Hemerythrin-like superfamily Thimo_1630 6941e5e1a998fac9ad785497049ce569 183 ProSitePatterns PS00550 Hemerythrin family signature. 73 96 - T 14-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Thimo_1630 6941e5e1a998fac9ad785497049ce569 183 Gene3D G3DSA:1.20.120.50 4 149 9.1E-21 T 14-10-2018 IPR035938 Hemerythrin-like superfamily Thimo_1914 998dbff8450f2dd2027933ca56ec1b04 511 SUPERFAMILY SSF50182 166 231 1.57E-15 T 14-10-2018 IPR010920 LSM domain superfamily Thimo_1914 998dbff8450f2dd2027933ca56ec1b04 511 SMART SM00100 354 472 8.8E-16 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_1914 998dbff8450f2dd2027933ca56ec1b04 511 Gene3D G3DSA:2.60.120.10 347 484 1.2E-24 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_1914 998dbff8450f2dd2027933ca56ec1b04 511 SUPERFAMILY SSF82689 242 331 1.03E-10 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Thimo_1914 998dbff8450f2dd2027933ca56ec1b04 511 SUPERFAMILY SSF51206 350 476 3.4E-24 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_1914 998dbff8450f2dd2027933ca56ec1b04 511 Gene3D G3DSA:2.30.30.60 181 230 1.8E-9 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Thimo_1914 998dbff8450f2dd2027933ca56ec1b04 511 Pfam PF00027 Cyclic nucleotide-binding domain 373 458 2.8E-14 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_1914 998dbff8450f2dd2027933ca56ec1b04 511 Pfam PF00924 Mechanosensitive ion channel 127 322 2.5E-30 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Thimo_0006 71ac247ae70fd5d5f58ef7d0921adf42 426 Pfam PF12867 DinB superfamily 18 153 4.3E-7 T 14-10-2018 IPR024775 DinB-like domain Thimo_0006 71ac247ae70fd5d5f58ef7d0921adf42 426 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 15 423 1.6E-166 T 14-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 Thimo_0006 71ac247ae70fd5d5f58ef7d0921adf42 426 Gene3D G3DSA:3.90.1580.10 183 426 3.7E-37 T 14-10-2018 Thimo_0006 71ac247ae70fd5d5f58ef7d0921adf42 426 SUPERFAMILY SSF109854 11 150 6.87E-6 T 14-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes Thimo_0006 71ac247ae70fd5d5f58ef7d0921adf42 426 Pfam PF03781 Sulfatase-modifying factor enzyme 1 191 423 3.8E-31 T 14-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Thimo_0006 71ac247ae70fd5d5f58ef7d0921adf42 426 SUPERFAMILY SSF56436 185 425 1.13E-68 T 14-10-2018 IPR016187 C-type lectin fold Thimo_1466 41c63be6a2b1cbd9f38a2460e88693f0 120 Gene3D G3DSA:3.40.1350.10 14 120 4.7E-36 T 14-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 Thimo_1466 41c63be6a2b1cbd9f38a2460e88693f0 120 Hamap MF_00048 UPF0102 protein YraN [yraN]. 8 117 23.829 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 Thimo_1466 41c63be6a2b1cbd9f38a2460e88693f0 120 Pfam PF02021 Uncharacterised protein family UPF0102 16 104 2.8E-30 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 Thimo_1466 41c63be6a2b1cbd9f38a2460e88693f0 120 SUPERFAMILY SSF52980 15 107 1.18E-21 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_1466 41c63be6a2b1cbd9f38a2460e88693f0 120 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 11 118 3.9E-30 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 Thimo_2358 b6e008237f31ec5e8db370881d77e284 228 SUPERFAMILY SSF143081 2 215 4.19E-78 T 14-10-2018 IPR036590 SOS response associated peptidase-like Thimo_2358 b6e008237f31ec5e8db370881d77e284 228 Pfam PF02586 SOS response associated peptidase (SRAP) 1 210 1.3E-69 T 14-10-2018 IPR003738 SOS response associated peptidase (SRAP) Thimo_2358 b6e008237f31ec5e8db370881d77e284 228 Gene3D G3DSA:3.90.1680.10 1 221 5.1E-74 T 14-10-2018 IPR036590 SOS response associated peptidase-like Thimo_2085 fc280915fb1502049064f3f8b59ebc69 228 SUPERFAMILY SSF56784 7 218 1.47E-38 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_2085 fc280915fb1502049064f3f8b59ebc69 228 Gene3D G3DSA:3.40.50.1000 10 203 2.6E-19 T 14-10-2018 IPR023214 HAD superfamily Thimo_2085 fc280915fb1502049064f3f8b59ebc69 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 84 190 4.7E-7 T 14-10-2018 Thimo_2085 fc280915fb1502049064f3f8b59ebc69 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 91 189 4.9E-8 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Pfam PF14492 Elongation Factor G, domain II 411 484 4.8E-35 T 14-10-2018 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 SMART SM00838 607 694 8.3E-62 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:3.30.70.870 412 490 2.9E-34 T 14-10-2018 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:3.40.50.300 1 293 1.5E-115 T 14-10-2018 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:3.30.70.240 611 681 1.1E-95 T 14-10-2018 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:3.30.230.10 491 694 1.1E-95 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.1E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.1E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 12 25 6.1E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.1E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 PRINTS PR00315 GTP-binding elongation factor signature 58 66 6.1E-15 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 697 0.0 T 14-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF54980 409 487 6.12E-26 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Pfam PF03144 Elongation factor Tu domain 2 331 398 1.6E-18 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Pfam PF03764 Elongation factor G, domain IV 486 604 2.7E-48 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF52540 6 288 3.86E-109 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 SMART SM00889 487 605 3.5E-75 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Hamap MF_00054_B Elongation factor G [fusA]. 6 698 114.415 T 14-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Gene3D G3DSA:2.40.30.10 295 407 2.9E-42 T 14-10-2018 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF50447 271 411 7.07E-36 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF54211 486 606 1.14E-45 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 SUPERFAMILY SSF54980 610 695 3.2E-31 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Pfam PF00679 Elongation factor G C-terminus 607 692 5.3E-32 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 9.4E-67 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Thimo_2863 ff338cd2e0009bf019039b01761e6790 698 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 3.3E-33 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_0116 8cfcf86f995337994bc94fbc6cf7df00 387 Pfam PF01594 AI-2E family transporter 14 324 5.5E-55 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 Gene3D G3DSA:1.10.10.10 6 66 7.8E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 Pfam PF03099 Biotin/lipoate A/B protein ligase family 96 217 1.8E-12 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 SUPERFAMILY SSF46785 6 63 9.37E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 9 332 31.071 T 14-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 Gene3D G3DSA:2.30.30.100 287 335 2.6E-11 T 14-10-2018 Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 Gene3D G3DSA:3.30.930.10 81 285 3.5E-55 T 14-10-2018 Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 89 332 2.9E-48 T 14-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 Pfam PF08279 HTH domain 12 61 6.0E-11 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 SUPERFAMILY SSF50037 287 332 7.78E-8 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 SUPERFAMILY SSF55681 89 282 2.32E-50 T 14-10-2018 Thimo_0106 cba68ba68fcebdd127ea56f3b76916fd 336 Pfam PF02237 Biotin protein ligase C terminal domain 288 332 2.9E-5 T 14-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Thimo_1182 21ebe2978925ca0eb9b48d1601a2f29f 419 Pfam PF13183 4Fe-4S dicluster domain 21 86 1.1E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1182 21ebe2978925ca0eb9b48d1601a2f29f 419 SUPERFAMILY SSF54862 20 100 7.53E-17 T 14-10-2018 Thimo_1182 21ebe2978925ca0eb9b48d1601a2f29f 419 Pfam PF02754 Cysteine-rich domain 184 260 3.0E-5 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_1182 21ebe2978925ca0eb9b48d1601a2f29f 419 Pfam PF02754 Cysteine-rich domain 295 380 1.5E-13 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_1182 21ebe2978925ca0eb9b48d1601a2f29f 419 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 23 34 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1182 21ebe2978925ca0eb9b48d1601a2f29f 419 Gene3D G3DSA:3.30.70.20 16 99 2.7E-9 T 14-10-2018 Thimo_1182 21ebe2978925ca0eb9b48d1601a2f29f 419 PIRSF PIRSF000139 8 408 1.8E-79 T 14-10-2018 Thimo_1182 21ebe2978925ca0eb9b48d1601a2f29f 419 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 74 85 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0706 119da1b0226007e8b623267334aeb51e 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 3.0E-29 T 14-10-2018 Thimo_0706 119da1b0226007e8b623267334aeb51e 89 Pfam PF00312 Ribosomal protein S15 8 88 1.1E-37 T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0706 119da1b0226007e8b623267334aeb51e 89 Gene3D G3DSA:1.10.287.10 2 89 1.2E-36 T 14-10-2018 Thimo_0706 119da1b0226007e8b623267334aeb51e 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0706 119da1b0226007e8b623267334aeb51e 89 SUPERFAMILY SSF47060 3 89 6.47E-36 T 14-10-2018 IPR009068 S15/NS1, RNA-binding Thimo_0706 119da1b0226007e8b623267334aeb51e 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 5.6E-39 T 14-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0706 119da1b0226007e8b623267334aeb51e 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.424 T 14-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0706 119da1b0226007e8b623267334aeb51e 89 SMART SM01387 8 88 4.2E-52 T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 Gene3D G3DSA:3.30.230.10 216 389 2.9E-55 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 4 625 3.6E-300 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 Gene3D G3DSA:3.40.50.670 390 623 2.9E-84 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 628 46.448 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 14-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 171 3.2E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 SMART SM00433 34 624 6.6E-202 T 14-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 Pfam PF00204 DNA gyrase B 218 383 1.9E-38 T 14-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 Pfam PF01751 Toprim domain 413 521 2.1E-12 T 14-10-2018 IPR006171 TOPRIM domain Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 479 495 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 66 79 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 109 123 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 414 428 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 31 46 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 497 514 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 266 279 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 517 529 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR00418 DNA topoisomerase II family signature 562 578 4.0E-57 T 14-10-2018 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 SMART SM00387 27 173 2.1E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 SUPERFAMILY SSF55874 4 215 3.93E-67 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 SUPERFAMILY SSF56719 388 621 4.71E-74 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 SUPERFAMILY SSF54211 218 382 3.79E-45 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 4.2E-106 T 14-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 558 620 7.9E-23 T 14-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_1786 ca063c9b4e4dd531097e566ce3a4de65 628 Gene3D G3DSA:3.30.565.10 3 215 3.2E-73 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0898 c4909a4387c213fde30fbb36d413cd01 388 Pfam PF04326 Putative DNA-binding domain 24 147 2.5E-13 T 14-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 Thimo_0898 c4909a4387c213fde30fbb36d413cd01 388 Gene3D G3DSA:3.30.950.30 13 154 4.4E-18 T 14-10-2018 IPR038461 Schlafen, AAA domain superfamily Thimo_0224 8faee2681b2971c157bd13196c0ca935 323 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 36 319 6.9E-52 T 14-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 Thimo_0224 8faee2681b2971c157bd13196c0ca935 323 SMART SM00062 35 275 0.0074 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_0224 8faee2681b2971c157bd13196c0ca935 323 Pfam PF13379 NMT1-like family 33 261 3.5E-51 T 14-10-2018 Thimo_0224 8faee2681b2971c157bd13196c0ca935 323 SUPERFAMILY SSF53850 33 255 1.58E-47 T 14-10-2018 Thimo_0224 8faee2681b2971c157bd13196c0ca935 323 Gene3D G3DSA:3.40.190.10 112 210 9.5E-83 T 14-10-2018 Thimo_0224 8faee2681b2971c157bd13196c0ca935 323 Gene3D G3DSA:3.40.190.10 36 313 9.5E-83 T 14-10-2018 Thimo_1291 71c15823688a422a45b21d70106f8373 445 Gene3D G3DSA:2.30.40.10 7 427 1.3E-171 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Thimo_1291 71c15823688a422a45b21d70106f8373 445 SUPERFAMILY SSF51556 62 361 2.04E-105 T 14-10-2018 IPR032466 Metal-dependent hydrolase Thimo_1291 71c15823688a422a45b21d70106f8373 445 Gene3D G3DSA:3.20.20.140 63 353 1.3E-171 T 14-10-2018 Thimo_1291 71c15823688a422a45b21d70106f8373 445 Hamap MF_01281 5'-deoxyadenosine deaminase [dadD]. 4 435 42.204 T 14-10-2018 IPR023512 Deaminase MtaD/DadD GO:0019239 Thimo_1291 71c15823688a422a45b21d70106f8373 445 SUPERFAMILY SSF51338 4 434 5.46E-29 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Thimo_1291 71c15823688a422a45b21d70106f8373 445 Pfam PF01979 Amidohydrolase family 59 408 1.0E-72 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Thimo_3420 00124501a3fa704e89239e9778e735ba 296 Hamap MF_00188 Protease HtpX [htpX]. 1 294 25.615 T 14-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 Thimo_3420 00124501a3fa704e89239e9778e735ba 296 Pfam PF01435 Peptidase family M48 83 293 2.6E-41 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Thimo_3420 00124501a3fa704e89239e9778e735ba 296 Gene3D G3DSA:3.30.2010.10 72 165 1.2E-33 T 14-10-2018 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 SUPERFAMILY SSF53659 371 691 1.27E-99 T 14-10-2018 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 387 688 3.9E-132 T 14-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 Pfam PF01515 Phosphate acetyl/butaryl transferase 371 688 4.1E-132 T 14-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 SUPERFAMILY SSF75138 207 334 6.67E-25 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 SUPERFAMILY SSF52540 1 218 5.93E-16 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 Gene3D G3DSA:3.40.50.10750 511 664 1.6E-144 T 14-10-2018 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 Gene3D G3DSA:3.40.1390.20 206 348 4.3E-26 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 Gene3D G3DSA:3.40.50.300 2 205 4.1E-14 T 14-10-2018 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 Pfam PF07085 DRTGG domain 212 325 2.4E-27 T 14-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 Pfam PF13500 AAA domain 2 208 1.7E-22 T 14-10-2018 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 Gene3D G3DSA:3.40.50.10950 380 691 1.6E-144 T 14-10-2018 Thimo_1933 8e69f758b8199d59ffa55c57ba91b714 707 PIRSF PIRSF006107 1 696 8.2E-187 T 14-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 126 8.6E-31 T 14-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 51 4.6E-19 T 14-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 126 25.544 T 14-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 126 2.0E-19 T 14-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 Gene3D G3DSA:1.20.5.710 2 55 7.0E-22 T 14-10-2018 Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 126 1.5E-49 T 14-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 Gene3D G3DSA:3.30.1390.10 56 126 6.0E-32 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 SUPERFAMILY SSF48300 4 62 3.14E-17 T 14-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2868 170aac55d599dd5a8e4c565e46eb48dd 126 SUPERFAMILY SSF54736 55 126 1.36E-25 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Thimo_2968 06224bfde3867026d9ba45e067172f68 472 Pfam PF02562 PhoH-like protein 261 456 7.2E-56 T 14-10-2018 IPR003714 PhoH-like protein GO:0005524 Thimo_2968 06224bfde3867026d9ba45e067172f68 472 SMART SM00670 10 152 3.7E-11 T 14-10-2018 IPR002716 PIN domain Thimo_2968 06224bfde3867026d9ba45e067172f68 472 Pfam PF13638 PIN domain 12 164 3.0E-39 T 14-10-2018 IPR002716 PIN domain Thimo_2968 06224bfde3867026d9ba45e067172f68 472 SUPERFAMILY SSF88723 9 169 2.35E-14 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_2968 06224bfde3867026d9ba45e067172f68 472 Gene3D G3DSA:3.40.50.300 259 470 2.3E-66 T 14-10-2018 Thimo_2968 06224bfde3867026d9ba45e067172f68 472 SUPERFAMILY SSF52540 135 452 1.8E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2968 06224bfde3867026d9ba45e067172f68 472 Gene3D G3DSA:3.40.50.1010 6 166 2.3E-22 T 14-10-2018 Thimo_2283 2e6e9cfa1e7713c06de0971f3fcd1b31 239 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 12 236 36.126 T 14-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Thimo_2283 2e6e9cfa1e7713c06de0971f3fcd1b31 239 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 12 230 3.9E-82 T 14-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Thimo_2283 2e6e9cfa1e7713c06de0971f3fcd1b31 239 SUPERFAMILY SSF53335 6 215 6.1E-45 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2283 2e6e9cfa1e7713c06de0971f3fcd1b31 239 Gene3D G3DSA:3.40.50.150 12 235 5.3E-72 T 14-10-2018 Thimo_2283 2e6e9cfa1e7713c06de0971f3fcd1b31 239 Pfam PF13489 Methyltransferase domain 49 201 8.2E-23 T 14-10-2018 Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 265 298 - T 14-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 SUPERFAMILY SSF63882 16 188 3.92E-50 T 14-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 SMART SM00852 192 333 5.2E-36 T 14-10-2018 IPR001453 MoaB/Mog domain Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 Gene3D G3DSA:2.170.190.11 62 153 3.7E-122 T 14-10-2018 Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 Pfam PF00994 Probable molybdopterin binding domain 192 331 1.3E-24 T 14-10-2018 IPR001453 MoaB/Mog domain Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 Gene3D G3DSA:3.90.105.10 38 186 3.7E-122 T 14-10-2018 Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 Pfam PF03453 MoeA N-terminal region (domain I and II) 20 179 4.6E-41 T 14-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 Pfam PF03454 MoeA C-terminal region (domain IV) 350 421 7.0E-16 T 14-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 Gene3D G3DSA:3.40.980.10 187 343 3.7E-122 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 SUPERFAMILY SSF63867 344 423 8.76E-16 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 SUPERFAMILY SSF53218 189 337 3.66E-38 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Thimo_1684 309bbd5d4404892b053ef570a33d10aa 426 Gene3D G3DSA:2.40.340.10 344 416 3.7E-122 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SUPERFAMILY SSF55073 523 686 2.28E-46 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SUPERFAMILY SSF141868 700 947 1.2E-77 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Gene3D G3DSA:3.30.450.20 390 515 9.6E-26 T 14-10-2018 Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 391 514 2.9E-18 T 14-10-2018 IPR000014 PAS domain Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Pfam PF00990 Diguanylate cyclase, GGDEF domain 518 679 7.5E-44 T 14-10-2018 IPR000160 GGDEF domain Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SUPERFAMILY SSF55785 403 516 4.03E-24 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SMART SM00091 392 458 1.2E-9 T 14-10-2018 IPR000014 PAS domain Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SMART SM00052 694 940 4.3E-90 T 14-10-2018 IPR001633 EAL domain Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Pfam PF00989 PAS fold 393 504 2.0E-12 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Pfam PF13185 GAF domain 235 374 5.2E-10 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SMART SM00086 465 507 5.3E-6 T 14-10-2018 IPR001610 PAC motif Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SMART SM00086 162 205 130.0 T 14-10-2018 IPR001610 PAC motif Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SUPERFAMILY SSF55781 236 384 1.02E-17 T 14-10-2018 Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SMART SM00267 507 684 3.3E-55 T 14-10-2018 IPR000160 GGDEF domain Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Gene3D G3DSA:3.30.450.20 87 211 6.6E-10 T 14-10-2018 Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Gene3D G3DSA:3.30.70.270 516 697 1.2E-58 T 14-10-2018 Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Pfam PF00563 EAL domain 701 935 3.2E-63 T 14-10-2018 IPR001633 EAL domain Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 516 682 9.0E-38 T 14-10-2018 IPR000160 GGDEF domain Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Gene3D G3DSA:3.30.450.40 212 389 1.5E-17 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Gene3D G3DSA:3.20.20.450 698 956 6.1E-84 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 Pfam PF08448 PAS fold 99 205 1.3E-7 T 14-10-2018 IPR013656 PAS fold-4 Thimo_0761 9464c46b5d81560a539af3fc46882f06 960 SMART SM00065 236 388 8.3E-11 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_0876 f02846df3ef04e24261d801d82247409 293 Pfam PF01680 SOR/SNZ family 7 211 4.2E-106 T 14-10-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0876 f02846df3ef04e24261d801d82247409 293 Gene3D G3DSA:3.20.20.70 2 287 3.5E-145 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0876 f02846df3ef04e24261d801d82247409 293 PIRSF PIRSF029271 1 293 4.6E-148 T 14-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0876 f02846df3ef04e24261d801d82247409 293 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 3 293 50.566 T 14-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0876 f02846df3ef04e24261d801d82247409 293 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 9 293 1.1E-146 T 14-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0876 f02846df3ef04e24261d801d82247409 293 SUPERFAMILY SSF51366 17 262 1.98E-64 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Thimo_0876 f02846df3ef04e24261d801d82247409 293 ProSitePatterns PS01235 PdxS/SNZ family signature. 204 222 - T 14-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0578 c8add03258b672c3a2ff4ae9272e3760 184 Pfam PF04248 Domain of unknown function (DUF427) 52 142 1.7E-24 T 14-10-2018 IPR007361 Domain of unknown function DUF427 Thimo_0578 c8add03258b672c3a2ff4ae9272e3760 184 Gene3D G3DSA:2.170.150.40 43 148 1.3E-26 T 14-10-2018 Thimo_2368 08e3e347251a348833605b510f949ac0 223 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 24 212 6.5E-27 T 14-10-2018 Thimo_2368 08e3e347251a348833605b510f949ac0 223 SUPERFAMILY SSF53335 7 191 2.36E-31 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2368 08e3e347251a348833605b510f949ac0 223 Gene3D G3DSA:3.40.50.150 2 217 2.6E-45 T 14-10-2018 Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 Pfam PF08402 TOBE domain 296 376 1.0E-16 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 SUPERFAMILY SSF50331 255 376 4.16E-21 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 Gene3D G3DSA:2.40.50.100 299 366 8.3E-8 T 14-10-2018 Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 Gene3D G3DSA:3.40.50.300 15 256 1.5E-73 T 14-10-2018 Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 SUPERFAMILY SSF52540 22 261 1.6E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 Pfam PF00005 ABC transporter 38 179 3.4E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 SMART SM00382 46 237 2.2E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 Gene3D G3DSA:2.40.50.140 257 298 8.3E-8 T 14-10-2018 Thimo_0944 1433fa6582eaf3f2acbd14cf807aa919 378 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 52 376 1.9E-123 T 14-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Thimo_1544 5646d33b8f4081f7bb392b3819a258f5 339 SUPERFAMILY SSF53850 26 254 3.74E-48 T 14-10-2018 Thimo_1544 5646d33b8f4081f7bb392b3819a258f5 339 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 253 7.9E-29 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_1544 5646d33b8f4081f7bb392b3819a258f5 339 SMART SM00062 35 257 3.1E-52 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_1544 5646d33b8f4081f7bb392b3819a258f5 339 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site Thimo_1544 5646d33b8f4081f7bb392b3819a258f5 339 Gene3D G3DSA:3.40.190.10 25 253 1.2E-49 T 14-10-2018 Thimo_1544 5646d33b8f4081f7bb392b3819a258f5 339 Gene3D G3DSA:3.40.190.10 127 222 1.2E-49 T 14-10-2018 Thimo_3340 936cae33230a030a993ad8859a53c3f8 576 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Thimo_3340 936cae33230a030a993ad8859a53c3f8 576 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 552 561 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Thimo_3340 936cae33230a030a993ad8859a53c3f8 576 Gene3D G3DSA:1.10.645.10 1 561 2.3E-267 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3340 936cae33230a030a993ad8859a53c3f8 576 Pfam PF00374 Nickel-dependent hydrogenase 39 561 1.1E-229 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Thimo_3340 936cae33230a030a993ad8859a53c3f8 576 SUPERFAMILY SSF56762 1 561 1.09E-174 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 SUPERFAMILY SSF47917 446 525 2.98E-11 T 14-10-2018 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 420 429 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 Gene3D G3DSA:2.40.50.100 109 181 1.6E-144 T 14-10-2018 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 Gene3D G3DSA:1.10.1140.10 432 577 8.2E-28 T 14-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 208 429 1.2E-85 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 9 66 7.3E-9 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 85 198 1.5E-14 T 14-10-2018 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 SMART SM00382 220 413 6.2E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 SUPERFAMILY SSF50615 7 70 3.53E-5 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 Gene3D G3DSA:2.40.30.20 1 71 8.3E-20 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 1 581 42.555 T 14-10-2018 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 Gene3D G3DSA:3.40.50.300 72 429 1.6E-144 T 14-10-2018 Thimo_2264 23e89511236ddbaa7b65a98a458cfb67 594 SUPERFAMILY SSF52540 174 430 5.0E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 Gene3D G3DSA:1.10.8.60 336 441 1.4E-40 T 14-10-2018 Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 SUPERFAMILY SSF52540 3 442 2.19E-89 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 336 407 6.0E-7 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 444 42.839 T 14-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 144 1.8E-7 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 SMART SM01086 336 432 5.1E-23 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 SMART SM00382 49 333 1.4E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 Pfam PF07724 AAA domain (Cdc48 subfamily) 188 330 6.9E-39 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_3279 c0a0376b186dbf98764e54e81ec8d857 444 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 444 7.1E-207 T 14-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 Gene3D G3DSA:3.40.50.970 1 191 7.3E-59 T 14-10-2018 Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 Gene3D G3DSA:3.40.50.1220 194 362 4.7E-44 T 14-10-2018 Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 SUPERFAMILY SSF52518 364 575 1.0E-60 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 386 553 5.5E-41 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 SUPERFAMILY SSF52518 6 188 3.27E-52 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 323 1.1E-32 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 SUPERFAMILY SSF52467 163 358 1.93E-44 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 7 576 4.1E-177 T 14-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 Gene3D G3DSA:3.40.50.970 363 577 2.6E-62 T 14-10-2018 Thimo_3614 2b614bbc779ded1b98cca4dc17f7e618 577 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 178 1.1E-47 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Thimo_0155 9ca08b1cbb50c736b9eb2abbeb40651d 456 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 6 444 3.4E-125 T 14-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Thimo_0155 9ca08b1cbb50c736b9eb2abbeb40651d 456 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 187 5.7E-12 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0155 9ca08b1cbb50c736b9eb2abbeb40651d 456 Gene3D G3DSA:3.40.50.880 262 453 3.4E-10 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0155 9ca08b1cbb50c736b9eb2abbeb40651d 456 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 1 441 37.775 T 14-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Thimo_0155 9ca08b1cbb50c736b9eb2abbeb40651d 456 SUPERFAMILY SSF52317 243 451 3.21E-32 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0155 9ca08b1cbb50c736b9eb2abbeb40651d 456 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 246 435 1.5E-34 T 14-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Thimo_0155 9ca08b1cbb50c736b9eb2abbeb40651d 456 Gene3D G3DSA:3.40.50.300 3 190 7.2E-25 T 14-10-2018 Thimo_0155 9ca08b1cbb50c736b9eb2abbeb40651d 456 SUPERFAMILY SSF52540 1 195 1.34E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 SUPERFAMILY SSF56601 220 587 4.1E-84 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 Pfam PF00912 Transglycosylase 71 237 1.7E-44 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 ProSitePatterns PS00036 Basic-leucine zipper (bZIP) domain signature. 218 233 - T 14-10-2018 IPR004827 Basic-leucine zipper domain GO:0003700|GO:0006355 Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 Gene3D G3DSA:1.10.3810.10 66 262 7.9E-52 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 608 695 2.4E-18 T 14-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 49 584 1.0E-192 T 14-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 SUPERFAMILY SSF53955 50 270 5.62E-61 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 Pfam PF00905 Penicillin binding protein transpeptidase domain 316 530 4.0E-14 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Thimo_3173 748ec82adcb6f81c4ea441f1e6c2d243 699 Gene3D G3DSA:3.40.710.10 280 603 2.0E-67 T 14-10-2018 Thimo_0465 59ccfca5fc1146ded86869258df7c899 114 PIRSF PIRSF000169 1 111 1.4E-24 T 14-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 Thimo_0465 59ccfca5fc1146ded86869258df7c899 114 Gene3D G3DSA:1.20.1300.10 1 110 2.4E-26 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0465 59ccfca5fc1146ded86869258df7c899 114 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 5 107 1.1E-27 T 14-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 Thimo_0465 59ccfca5fc1146ded86869258df7c899 114 SUPERFAMILY SSF81343 3 107 3.11E-23 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0465 59ccfca5fc1146ded86869258df7c899 114 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 7 95 7.4E-11 T 14-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_3311 b932f1f3c5ced9b1b2b046f68bddc7f9 463 SUPERFAMILY SSF56322 47 461 1.7E-87 T 14-10-2018 IPR005801 ADC synthase GO:0009058 Thimo_3311 b932f1f3c5ced9b1b2b046f68bddc7f9 463 Gene3D G3DSA:3.60.120.10 40 462 4.3E-96 T 14-10-2018 IPR005801 ADC synthase GO:0009058 Thimo_3311 b932f1f3c5ced9b1b2b046f68bddc7f9 463 Pfam PF00425 chorismate binding enzyme 201 452 3.6E-65 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Thimo_3311 b932f1f3c5ced9b1b2b046f68bddc7f9 463 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 112 460 1.1E-82 T 14-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 203 216 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 Pfam PF00158 Sigma-54 interaction domain 181 343 3.6E-65 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 Pfam PF02954 Bacterial regulatory protein, Fis family 450 480 6.9E-6 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 SUPERFAMILY SSF46689 393 493 3.05E-5 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 SUPERFAMILY SSF52540 181 422 1.23E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 Gene3D G3DSA:1.10.8.60 350 428 4.1E-16 T 14-10-2018 Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 Gene3D G3DSA:3.40.50.300 169 349 4.9E-60 T 14-10-2018 Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 393 402 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0901 5fb9a44cde3599deb71b42244bee15ab 504 SMART SM00382 199 342 1.2E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 597 611 8.8E-37 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 493 511 8.8E-37 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 564 582 8.8E-37 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 535 553 8.8E-37 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 213 326 1.3E-11 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 SUPERFAMILY SSF81923 1 141 1.57E-59 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:1.10.8.60 358 440 3.9E-34 T 14-10-2018 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 520 538 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 SUPERFAMILY SSF52540 439 740 2.29E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.8E-15 T 14-10-2018 IPR004176 Clp, N-terminal Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 SUPERFAMILY SSF52540 169 424 1.25E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 655 735 1.7E-22 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:1.10.1780.10 1 142 1.6E-43 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Pfam PF07724 AAA domain (Cdc48 subfamily) 488 648 2.3E-47 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 736 0.0 T 14-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 304 316 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:3.40.50.300 168 357 1.4E-63 T 14-10-2018 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:3.40.50.300 442 653 5.2E-78 T 14-10-2018 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 Gene3D G3DSA:1.10.8.60 655 748 6.5E-28 T 14-10-2018 Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 SMART SM00382 208 353 9.4E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 SMART SM00382 489 638 7.7E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2092 724afe624e3f3ee057ba1a154b5528f6 750 SMART SM01086 655 744 5.1E-34 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Thimo_3137 f624466e32aeb9c50c9f76dad54f8f7d 195 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 6 184 35.184 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Thimo_3137 f624466e32aeb9c50c9f76dad54f8f7d 195 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 113 123 - T 14-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Thimo_3137 f624466e32aeb9c50c9f76dad54f8f7d 195 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 7 191 4.6E-64 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Thimo_3137 f624466e32aeb9c50c9f76dad54f8f7d 195 Pfam PF01195 Peptidyl-tRNA hydrolase 8 190 2.1E-56 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Thimo_3137 f624466e32aeb9c50c9f76dad54f8f7d 195 SUPERFAMILY SSF53178 6 191 5.23E-67 T 14-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Thimo_3137 f624466e32aeb9c50c9f76dad54f8f7d 195 Gene3D G3DSA:3.40.50.1470 1 194 2.1E-69 T 14-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Thimo_3137 f624466e32aeb9c50c9f76dad54f8f7d 195 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 19 32 - T 14-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 SMART SM00474 295 482 7.6E-42 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 SMART SM00475 2 259 2.7E-119 T 14-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 169 262 6.5E-27 T 14-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:3.30.420.10 292 507 9.8E-73 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 SUPERFAMILY SSF56672 487 894 3.22E-157 T 14-10-2018 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:1.20.1060.10 508 624 2.8E-38 T 14-10-2018 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:3.40.50.1010 7 274 2.6E-90 T 14-10-2018 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 SMART SM00279 171 206 2.6E-11 T 14-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 SUPERFAMILY SSF47807 169 282 4.93E-30 T 14-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 ProSitePatterns PS00447 DNA polymerase family A signature. 720 739 - T 14-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 7 168 7.5E-53 T 14-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:1.10.150.20 172 244 2.6E-90 T 14-10-2018 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 SUPERFAMILY SSF53098 293 482 1.22E-57 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Pfam PF00476 DNA polymerase family A 517 892 7.0E-152 T 14-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Pfam PF01612 3'-5' exonuclease 297 482 1.4E-40 T 14-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 TIGRFAM TIGR00593 pola: DNA polymerase I 7 894 3.7E-277 T 14-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 SMART SM00482 652 858 6.4E-117 T 14-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 SUPERFAMILY SSF88723 6 168 1.04E-55 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:3.30.70.370 630 890 2.5E-113 T 14-10-2018 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 811 827 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 779 790 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 720 745 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 644 659 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 666 689 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 621 643 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 696 709 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 841 854 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 PRINTS PR00868 DNA-polymerase family A (pol I) signature 757 768 3.9E-78 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2592 72372b9e235cf839c6152a44b54b24a9 894 Gene3D G3DSA:1.10.150.20 675 818 2.5E-113 T 14-10-2018 Thimo_2636 274fbefe5aaf3e9b664cd690689c09f2 423 SUPERFAMILY SSF56935 29 423 6.04E-68 T 14-10-2018 Thimo_2636 274fbefe5aaf3e9b664cd690689c09f2 423 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 25 423 4.1E-61 T 14-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Thimo_2636 274fbefe5aaf3e9b664cd690689c09f2 423 Gene3D G3DSA:2.40.160.60 29 423 4.5E-85 T 14-10-2018 Thimo_0802 f1799751b98d5449c68f74531c569ed0 282 Gene3D G3DSA:3.30.70.1290 1 160 3.8E-42 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_0802 f1799751b98d5449c68f74531c569ed0 282 Pfam PF01797 Transposase IS200 like 13 120 2.2E-15 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_0802 f1799751b98d5449c68f74531c569ed0 282 SMART SM01321 9 123 4.6E-42 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_0802 f1799751b98d5449c68f74531c569ed0 282 SUPERFAMILY SSF143422 3 126 3.92E-28 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF54211 463 581 5.56E-40 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 150 9.8E-12 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF54980 587 677 3.07E-22 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Pfam PF00009 Elongation factor Tu GTP binding domain 8 261 3.5E-34 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Pfam PF00679 Elongation factor G C-terminus 585 671 4.2E-25 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF54980 389 466 5.04E-18 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF52540 4 262 3.83E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:3.40.50.300 2 266 6.6E-55 T 14-10-2018 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:3.30.230.10 468 671 1.0E-77 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:3.30.70.870 396 467 5.5E-20 T 14-10-2018 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 SUPERFAMILY SSF50447 245 380 5.3E-22 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Pfam PF03764 Elongation factor G, domain IV 463 581 4.0E-40 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:3.30.70.240 588 659 1.0E-77 T 14-10-2018 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Gene3D G3DSA:2.40.30.10 272 395 4.4E-23 T 14-10-2018 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 SMART SM00889 464 582 2.0E-59 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 SMART SM00838 584 672 1.2E-25 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_2796 0302c60d66b8ffa072b7a2c3bee09dfc 681 Pfam PF14492 Elongation Factor G, domain II 389 461 2.9E-21 T 14-10-2018 Thimo_0036 f696c701e400965297daf96e35340749 316 Gene3D G3DSA:3.40.50.720 5 132 2.7E-26 T 14-10-2018 Thimo_0036 f696c701e400965297daf96e35340749 316 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 127 8.1E-14 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Thimo_0036 f696c701e400965297daf96e35340749 316 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 158 212 2.8E-12 T 14-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 Thimo_0036 f696c701e400965297daf96e35340749 316 Gene3D G3DSA:3.30.360.10 133 316 7.3E-66 T 14-10-2018 Thimo_0036 f696c701e400965297daf96e35340749 316 SUPERFAMILY SSF51735 6 179 5.73E-25 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0383 40f9f6c2947d1745e4e67b1b204e7f39 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 5.0E-34 T 14-10-2018 Thimo_0383 40f9f6c2947d1745e4e67b1b204e7f39 163 Gene3D G3DSA:3.30.70.1150 83 163 1.4E-28 T 14-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Thimo_0383 40f9f6c2947d1745e4e67b1b204e7f39 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 4.3E-65 T 14-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Thimo_0383 40f9f6c2947d1745e4e67b1b204e7f39 163 SUPERFAMILY SSF55021 1 75 8.09E-23 T 14-10-2018 Thimo_0383 40f9f6c2947d1745e4e67b1b204e7f39 163 SUPERFAMILY SSF55021 79 161 3.72E-26 T 14-10-2018 Thimo_0383 40f9f6c2947d1745e4e67b1b204e7f39 163 Gene3D G3DSA:3.30.70.260 1 79 4.7E-36 T 14-10-2018 Thimo_0383 40f9f6c2947d1745e4e67b1b204e7f39 163 Pfam PF13710 ACT domain 13 72 1.2E-16 T 14-10-2018 Thimo_0383 40f9f6c2947d1745e4e67b1b204e7f39 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 3.9E-26 T 14-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Thimo_2629 77bf8661ca4c4a6a1008e2e9880b902d 188 SUPERFAMILY SSF51283 3 187 2.36E-51 T 14-10-2018 IPR036157 dUTPase-like superfamily Thimo_2629 77bf8661ca4c4a6a1008e2e9880b902d 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 187 8.4E-49 T 14-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 Thimo_2629 77bf8661ca4c4a6a1008e2e9880b902d 188 Pfam PF00692 dUTPase 73 184 2.3E-7 T 14-10-2018 IPR029054 dUTPase-like Thimo_2629 77bf8661ca4c4a6a1008e2e9880b902d 188 Hamap MF_00146 dCTP deaminase [dcd]. 1 188 28.48 T 14-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 Thimo_2629 77bf8661ca4c4a6a1008e2e9880b902d 188 Gene3D G3DSA:2.70.40.10 1 160 5.0E-51 T 14-10-2018 IPR036157 dUTPase-like superfamily Thimo_2679 1478022416f122f46ba6e72799b4c17f 295 Gene3D G3DSA:3.20.20.60 2 295 7.9E-105 T 14-10-2018 Thimo_2679 1478022416f122f46ba6e72799b4c17f 295 SUPERFAMILY SSF51621 6 289 1.35E-100 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_2679 1478022416f122f46ba6e72799b4c17f 295 ProSitePatterns PS00161 Isocitrate lyase signature. 122 127 - T 14-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 Thimo_2679 1478022416f122f46ba6e72799b4c17f 295 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 6 292 50.052 T 14-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 Thimo_2679 1478022416f122f46ba6e72799b4c17f 295 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 9 291 3.3E-127 T 14-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 Thimo_2679 1478022416f122f46ba6e72799b4c17f 295 Pfam PF13714 Phosphoenolpyruvate phosphomutase 17 254 1.4E-49 T 14-10-2018 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.2E-18 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.2E-18 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.2E-18 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 92 4.7E-45 T 14-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 Pfam PF00216 Bacterial DNA-binding protein 1 91 3.4E-29 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.869 T 14-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 SMART SM00411 1 91 4.2E-41 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 SUPERFAMILY SSF47729 1 92 7.95E-31 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 Gene3D G3DSA:4.10.520.10 40 91 1.1E-26 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Thimo_1879 1e110d04817285808b30eb0e64853b32 116 Gene3D G3DSA:4.10.520.10 2 39 3.9E-5 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 ProSitePatterns PS00177 DNA topoisomerase II signature. 419 427 - T 14-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 801 100.335 T 14-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Gene3D G3DSA:3.40.50.670 395 589 1.6E-72 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 729 790 7.4E-31 T 14-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Pfam PF00204 DNA gyrase B 218 387 8.6E-58 T 14-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Pfam PF01751 Toprim domain 416 528 4.0E-18 T 14-10-2018 IPR006171 TOPRIM domain Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 SUPERFAMILY SSF55874 3 215 3.41E-71 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 733 749 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 265 278 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 522 534 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 417 431 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 111 125 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 484 500 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 502 519 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 33 48 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR00418 DNA topoisomerase II family signature 68 81 6.8E-71 T 14-10-2018 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 357 371 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 754 766 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 770 786 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 371 391 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 309 325 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 467 476 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 193 206 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 3 13 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 178 193 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 PRINTS PR01159 DNA gyrase subunit B signature 217 239 5.3E-76 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Gene3D G3DSA:3.40.50.670 671 800 2.6E-27 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Gene3D G3DSA:3.30.565.10 1 217 2.9E-89 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 SMART SM00387 29 173 1.4E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Gene3D G3DSA:3.30.230.10 218 389 9.7E-72 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 171 2.1E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 3 801 0.0 T 14-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 SMART SM00433 33 794 1.2E-264 T 14-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 SUPERFAMILY SSF56719 391 792 2.28E-85 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Thimo_0674 924bcf54f925fdf9474b9cdc4a6116bd 801 SUPERFAMILY SSF54211 218 389 8.16E-59 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0163 a9a3ee93b407e6e8ba11d35b12e10357 107 Pfam PF05957 Bacterial protein of unknown function (DUF883) 12 101 5.3E-16 T 14-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 Thimo_0163 a9a3ee93b407e6e8ba11d35b12e10357 107 SUPERFAMILY SSF58113 12 80 3.27E-6 T 14-10-2018 Thimo_0163 a9a3ee93b407e6e8ba11d35b12e10357 107 Gene3D G3DSA:1.20.120.20 4 83 2.9E-5 T 14-10-2018 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 SMART SM00448 431 539 0.17 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 SMART SM00448 575 688 2.2E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 Gene3D G3DSA:3.40.50.2300 427 551 2.7E-6 T 14-10-2018 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 Pfam PF00072 Response regulator receiver domain 577 688 8.3E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 SUPERFAMILY SSF55874 240 417 1.83E-45 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 SUPERFAMILY SSF47384 168 251 2.16E-21 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 SMART SM00388 185 250 5.7E-23 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 297 414 6.8E-29 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 SUPERFAMILY SSF52172 573 692 1.42E-36 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 Pfam PF00512 His Kinase A (phospho-acceptor) domain 185 249 2.7E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 SMART SM00387 297 415 2.7E-37 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 SUPERFAMILY SSF52172 428 544 1.25E-7 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 Gene3D G3DSA:3.30.565.10 251 417 1.5E-51 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 354 7.3E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 412 7.3E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 368 7.3E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 393 7.3E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 Gene3D G3DSA:1.10.287.130 166 248 1.9E-27 T 14-10-2018 Thimo_0665 f3368e4bc1044da8ece131996e36c1cf 697 Gene3D G3DSA:3.40.50.12740 574 694 7.1E-39 T 14-10-2018 Thimo_1431 6e70ada3656a5b6fe9984ec913bd99f1 402 Pfam PF02687 FtsX-like permease family 306 394 8.8E-12 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_1431 6e70ada3656a5b6fe9984ec913bd99f1 402 Pfam PF12704 MacB-like periplasmic core domain 21 242 9.0E-30 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Thimo_1163 b5ba9e7f69e383156547bb1b20e37309 291 SUPERFAMILY SSF109709 115 223 5.49E-33 T 14-10-2018 Thimo_1163 b5ba9e7f69e383156547bb1b20e37309 291 SUPERFAMILY SSF110849 31 124 3.92E-29 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Thimo_1163 b5ba9e7f69e383156547bb1b20e37309 291 SMART SM00470 32 122 3.8E-37 T 14-10-2018 IPR003115 ParB/Sulfiredoxin Thimo_1163 b5ba9e7f69e383156547bb1b20e37309 291 Pfam PF02195 ParB-like nuclease domain 34 122 6.8E-28 T 14-10-2018 IPR003115 ParB/Sulfiredoxin Thimo_1163 b5ba9e7f69e383156547bb1b20e37309 291 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 29 201 1.0E-60 T 14-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Thimo_1163 b5ba9e7f69e383156547bb1b20e37309 291 Gene3D G3DSA:3.90.1530.30 45 108 8.8E-28 T 14-10-2018 Thimo_1163 b5ba9e7f69e383156547bb1b20e37309 291 Gene3D G3DSA:1.10.10.2830 110 222 1.5E-36 T 14-10-2018 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 Gene3D G3DSA:3.40.50.720 2 200 6.5E-55 T 14-10-2018 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 321 420 1.1E-19 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 SUPERFAMILY SSF51735 11 194 1.56E-40 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 SUPERFAMILY SSF48179 204 296 2.04E-24 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 11 183 9.5E-30 T 14-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 SMART SM00984 321 421 2.9E-33 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 SUPERFAMILY SSF52413 304 420 2.75E-26 T 14-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 PIRSF PIRSF500136 1 428 3.1E-142 T 14-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 11 416 3.2E-111 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 294 2.5E-23 T 14-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 PIRSF PIRSF000124 10 425 8.5E-49 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Thimo_3602 10135b0577f389f08b0dc3dc13c2b678 428 Gene3D G3DSA:3.40.50.720 205 427 6.7E-54 T 14-10-2018 Thimo_0577 c3442b93a3900deaaa4d13585abe190b 217 Pfam PF04055 Radical SAM superfamily 31 108 1.2E-11 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0577 c3442b93a3900deaaa4d13585abe190b 217 Gene3D G3DSA:3.20.20.70 8 211 2.2E-35 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0577 c3442b93a3900deaaa4d13585abe190b 217 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 8 214 35.646 T 14-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 Thimo_0577 c3442b93a3900deaaa4d13585abe190b 217 SUPERFAMILY SSF102114 33 107 2.88E-13 T 14-10-2018 Thimo_0577 c3442b93a3900deaaa4d13585abe190b 217 PIRSF PIRSF000370 6 217 1.2E-65 T 14-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 Thimo_0577 c3442b93a3900deaaa4d13585abe190b 217 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 8 217 9.7E-106 T 14-10-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Thimo_0577 c3442b93a3900deaaa4d13585abe190b 217 Pfam PF13394 4Fe-4S single cluster domain 30 109 5.4E-9 T 14-10-2018 Thimo_0023 7853366e1c13c9ddbcc290a1192da445 271 Gene3D G3DSA:3.40.50.150 43 236 2.5E-23 T 14-10-2018 Thimo_0023 7853366e1c13c9ddbcc290a1192da445 271 Pfam PF13489 Methyltransferase domain 79 226 2.4E-14 T 14-10-2018 Thimo_0023 7853366e1c13c9ddbcc290a1192da445 271 SUPERFAMILY SSF53335 60 245 7.43E-21 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2603 65674021bfc98e630e3a7a3d3ac03811 276 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 155 175 - T 14-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site Thimo_2603 65674021bfc98e630e3a7a3d3ac03811 276 Gene3D G3DSA:3.60.110.10 1 276 1.9E-86 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_2603 65674021bfc98e630e3a7a3d3ac03811 276 Pfam PF00795 Carbon-nitrogen hydrolase 6 254 1.2E-50 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Thimo_2603 65674021bfc98e630e3a7a3d3ac03811 276 SUPERFAMILY SSF56317 2 270 3.79E-74 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_1628 467f1692a014226bd3f01a80a2b022f0 321 Hamap MF_00492 Transaldolase [tal]. 1 318 49.085 T 14-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Thimo_1628 467f1692a014226bd3f01a80a2b022f0 321 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 13 311 1.7E-93 T 14-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Thimo_1628 467f1692a014226bd3f01a80a2b022f0 321 Gene3D G3DSA:3.20.20.70 1 319 1.2E-133 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1628 467f1692a014226bd3f01a80a2b022f0 321 TIGRFAM TIGR00874 talAB: transaldolase 3 314 3.6E-146 T 14-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Thimo_1628 467f1692a014226bd3f01a80a2b022f0 321 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Thimo_1628 467f1692a014226bd3f01a80a2b022f0 321 SUPERFAMILY SSF51569 1 313 2.83E-108 T 14-10-2018 Thimo_0184 306c436e818e7bae30107f0d1e214577 299 SUPERFAMILY SSF53335 70 271 4.96E-41 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0184 306c436e818e7bae30107f0d1e214577 299 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 291 30.929 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Thimo_0184 306c436e818e7bae30107f0d1e214577 299 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 289 4.1E-84 T 14-10-2018 Thimo_0184 306c436e818e7bae30107f0d1e214577 299 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 285 3.5E-76 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Thimo_0184 306c436e818e7bae30107f0d1e214577 299 Gene3D G3DSA:3.40.50.150 102 295 3.1E-56 T 14-10-2018 Thimo_0184 306c436e818e7bae30107f0d1e214577 299 PIRSF PIRSF000401 1 293 4.5E-80 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Thimo_0587 b97bccacaf7f13caaf0189a6e1ec9df5 245 Gene3D G3DSA:3.30.460.80 2 170 3.4E-40 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0587 b97bccacaf7f13caaf0189a6e1ec9df5 245 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 151 172 - T 14-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0587 b97bccacaf7f13caaf0189a6e1ec9df5 245 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 118 178 9.0E-20 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0587 b97bccacaf7f13caaf0189a6e1ec9df5 245 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 16 198 34.171 T 14-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0587 b97bccacaf7f13caaf0189a6e1ec9df5 245 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 41 191 9.2E-42 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0587 b97bccacaf7f13caaf0189a6e1ec9df5 245 SUPERFAMILY SSF143243 16 213 1.83E-52 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 Pfam PF01515 Phosphate acetyl/butaryl transferase 429 749 3.0E-86 T 14-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 SMART SM01274 18 151 6.1E-77 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 SUPERFAMILY SSF53223 10 161 1.44E-51 T 14-10-2018 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 Pfam PF00390 Malic enzyme, N-terminal domain 19 114 3.1E-22 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 Pfam PF00390 Malic enzyme, N-terminal domain 115 150 6.6E-4 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 SMART SM00919 163 400 1.5E-125 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 SUPERFAMILY SSF53659 429 751 4.52E-85 T 14-10-2018 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 Gene3D G3DSA:3.40.50.10380 1 160 1.0E-66 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 Gene3D G3DSA:3.40.50.10950 445 749 2.6E-87 T 14-10-2018 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 SUPERFAMILY SSF51735 163 452 1.5E-79 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 Gene3D G3DSA:3.40.50.10750 572 725 2.6E-87 T 14-10-2018 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 PIRSF PIRSF036684 1 753 0.0 T 14-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 Gene3D G3DSA:3.40.50.720 161 444 1.1E-79 T 14-10-2018 Thimo_3259 447eef3fef2fd93a9fb84890001292bc 753 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 1.9E-16 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Thimo_0711 5df805937c5c5f6a19a050dbf1ef3be2 55 Pfam PF00471 Ribosomal protein L33 7 53 7.0E-18 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0711 5df805937c5c5f6a19a050dbf1ef3be2 55 SUPERFAMILY SSF57829 1 53 2.56E-19 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Thimo_0711 5df805937c5c5f6a19a050dbf1ef3be2 55 Gene3D G3DSA:2.20.28.120 1 55 3.5E-29 T 14-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0711 5df805937c5c5f6a19a050dbf1ef3be2 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 14-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0711 5df805937c5c5f6a19a050dbf1ef3be2 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 14.926 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0711 5df805937c5c5f6a19a050dbf1ef3be2 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.4E-25 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 Pfam PF01578 Cytochrome C assembly protein 89 295 9.1E-55 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 641 3.1E-121 T 14-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 3.7E-53 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 3.7E-53 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 3.7E-53 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 3.7E-53 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 634 647 3.7E-53 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 3.7E-53 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 3.7E-53 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.1E-94 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.1E-94 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 1.1E-94 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 1.1E-94 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 1.1E-94 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 1.1E-94 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 1.1E-94 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 1.1E-94 T 14-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1353 dd6aebe841fcc1c95a50ee4594413adc 661 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 644 5.4E-231 T 14-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 Gene3D G3DSA:3.30.390.30 337 453 1.4E-44 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 4 448 8.4E-168 T 14-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PIRSF PIRSF000350 1 448 2.4E-73 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 3.4E-34 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 3.4E-34 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 3.4E-34 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.4E-34 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 3.4E-34 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 317 2.4E-59 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 Gene3D G3DSA:3.50.50.60 143 260 3.8E-115 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 SUPERFAMILY SSF55424 335 447 5.84E-32 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 400 415 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 422 442 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 9.6E-70 T 14-10-2018 Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 SUPERFAMILY SSF51905 1 364 1.68E-54 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 Gene3D G3DSA:3.50.50.60 5 321 3.8E-115 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1041 0479ab9ed0fa789728346df645cd6e29 457 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 446 2.3E-31 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Thimo_0237 79dded09f60d8b047b422f9a56615442 520 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 180 205 - T 14-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 Thimo_0237 79dded09f60d8b047b422f9a56615442 520 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 4 520 2.9E-248 T 14-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Thimo_0237 79dded09f60d8b047b422f9a56615442 520 SMART SM01003 6 147 1.4E-67 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Thimo_0237 79dded09f60d8b047b422f9a56615442 520 SUPERFAMILY SSF52283 3 178 8.33E-53 T 14-10-2018 Thimo_0237 79dded09f60d8b047b422f9a56615442 520 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 6 147 2.2E-48 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Thimo_0237 79dded09f60d8b047b422f9a56615442 520 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 6 32 - T 14-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 Thimo_0237 79dded09f60d8b047b422f9a56615442 520 SMART SM01002 156 322 1.1E-83 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Thimo_0237 79dded09f60d8b047b422f9a56615442 520 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 151 379 2.3E-75 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Thimo_0237 79dded09f60d8b047b422f9a56615442 520 SUPERFAMILY SSF51735 147 328 1.73E-41 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0237 79dded09f60d8b047b422f9a56615442 520 PIRSF PIRSF000203 3 520 4.1E-267 T 14-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Thimo_0237 79dded09f60d8b047b422f9a56615442 520 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 437 520 3.2E-36 T 14-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Thimo_0237 79dded09f60d8b047b422f9a56615442 520 Gene3D G3DSA:3.40.50.720 147 329 3.5E-156 T 14-10-2018 Thimo_0237 79dded09f60d8b047b422f9a56615442 520 Gene3D G3DSA:3.40.50.720 5 376 3.5E-156 T 14-10-2018 Thimo_3010 730621967850f34eeb716124eecbb94c 290 SUPERFAMILY SSF159245 2 279 2.22E-52 T 14-10-2018 Thimo_1643 a44dd10d973fef16eb28a405ad5da1c9 157 Pfam PF05233 PHB accumulation regulatory domain 70 109 2.5E-17 T 14-10-2018 IPR007897 PHB accumulation regulatory Thimo_1643 a44dd10d973fef16eb28a405ad5da1c9 157 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 6 65 6.1E-27 T 14-10-2018 IPR012909 PHA accumulation regulator DNA-binding, N-terminal Thimo_1643 a44dd10d973fef16eb28a405ad5da1c9 157 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 5 110 1.1E-47 T 14-10-2018 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 Thimo_2301 eaaddbe0f68943364dfe6cc31d66126a 131 Gene3D G3DSA:3.40.50.1010 1 127 1.8E-24 T 14-10-2018 Thimo_2301 eaaddbe0f68943364dfe6cc31d66126a 131 Pfam PF01850 PIN domain 2 119 2.7E-11 T 14-10-2018 IPR002716 PIN domain Thimo_2301 eaaddbe0f68943364dfe6cc31d66126a 131 SUPERFAMILY SSF88723 2 123 1.43E-17 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.40.50.261 298 462 1.2E-54 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Pfam PF13302 Acetyltransferase (GNAT) domain 737 883 8.8E-9 T 14-10-2018 IPR000182 GNAT domain Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF52210 300 455 1.96E-41 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF52210 135 291 5.1E-41 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF56059 493 705 7.73E-36 T 14-10-2018 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.40.630.30 720 894 8.4E-46 T 14-10-2018 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.40.50.720 4 133 1.5E-39 T 14-10-2018 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 SMART SM00881 9 104 7.9E-31 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.30.1490.20 508 585 2.1E-71 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.40.50.261 134 295 2.1E-55 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 155 292 8.2E-53 T 14-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF55729 733 890 6.8E-21 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Pfam PF13549 ATP-grasp domain 482 703 1.6E-75 T 14-10-2018 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Pfam PF13380 CoA binding domain 15 138 9.2E-20 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 Gene3D G3DSA:3.30.470.20 494 701 2.1E-71 T 14-10-2018 Thimo_1810 42b0dcb8cbdee0120cef65b0054f1706 900 SUPERFAMILY SSF51735 7 134 4.16E-33 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 266 5.4E-72 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 4 665 6.5E-290 T 14-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:1.10.10.160 106 184 1.3E-92 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:3.40.50.300 4 267 1.3E-92 T 14-10-2018 Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 SUPERFAMILY SSF52540 2 638 6.46E-164 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 2 666 39.091 T 14-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 Pfam PF13361 UvrD-like helicase C-terminal domain 272 612 5.1E-67 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:3.40.50.300 275 631 1.6E-118 T 14-10-2018 Thimo_3151 4f7c22655df0b7664625e415048aee2c 667 Gene3D G3DSA:1.10.486.10 378 543 1.6E-118 T 14-10-2018 Thimo_0992 479b80fa1baad0dc426edde9d6d8ed05 652 Pfam PF13537 Glutamine amidotransferase domain 51 170 4.3E-44 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Thimo_0992 479b80fa1baad0dc426edde9d6d8ed05 652 Gene3D G3DSA:3.60.20.10 1 190 5.9E-62 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_0992 479b80fa1baad0dc426edde9d6d8ed05 652 Pfam PF00733 Asparagine synthase 249 618 5.1E-70 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Thimo_0992 479b80fa1baad0dc426edde9d6d8ed05 652 PIRSF PIRSF001589 1 645 7.1E-128 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Thimo_0992 479b80fa1baad0dc426edde9d6d8ed05 652 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 559 3.5E-132 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Thimo_0992 479b80fa1baad0dc426edde9d6d8ed05 652 SUPERFAMILY SSF52402 227 623 1.5E-62 T 14-10-2018 Thimo_0992 479b80fa1baad0dc426edde9d6d8ed05 652 SUPERFAMILY SSF56235 1 232 2.06E-59 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_0457 c360e86d93a31a72717fd1dfa0058d24 90 Pfam PF13711 Domain of unknown function (DUF4160) 9 74 1.5E-22 T 14-10-2018 IPR025427 Protein of unknown function DUF4160 Thimo_1156 30f06ea62e342874aa89ffd5dcbf0fa2 358 SUPERFAMILY SSF53850 44 357 9.96E-76 T 14-10-2018 Thimo_1156 30f06ea62e342874aa89ffd5dcbf0fa2 358 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 44 357 4.3E-99 T 14-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 Thimo_1156 30f06ea62e342874aa89ffd5dcbf0fa2 358 Pfam PF12849 PBP superfamily domain 40 329 4.0E-52 T 14-10-2018 IPR024370 PBP domain Thimo_1156 30f06ea62e342874aa89ffd5dcbf0fa2 358 PIRSF PIRSF002756 1 358 2.0E-99 T 14-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 Thimo_1156 30f06ea62e342874aa89ffd5dcbf0fa2 358 Gene3D G3DSA:3.40.190.10 48 344 6.7E-100 T 14-10-2018 Thimo_1156 30f06ea62e342874aa89ffd5dcbf0fa2 358 Gene3D G3DSA:3.40.190.10 121 299 6.7E-100 T 14-10-2018 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 Pfam PF13426 PAS domain 396 502 3.0E-7 T 14-10-2018 IPR000014 PAS domain Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 Gene3D G3DSA:1.10.287.130 633 695 1.0E-18 T 14-10-2018 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 PRINTS PR00344 Bacterial sensor protein C-terminal signature 799 809 5.6E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 PRINTS PR00344 Bacterial sensor protein C-terminal signature 810 828 5.6E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 PRINTS PR00344 Bacterial sensor protein C-terminal signature 834 847 5.6E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 PRINTS PR00344 Bacterial sensor protein C-terminal signature 781 795 5.6E-16 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 Pfam PF00512 His Kinase A (phospho-acceptor) domain 629 692 3.5E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 SUPERFAMILY SSF47384 627 692 2.35E-8 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 SMART SM00091 385 455 0.087 T 14-10-2018 IPR000014 PAS domain Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 SMART SM00091 511 576 6.4 T 14-10-2018 IPR000014 PAS domain Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 SMART SM00388 628 698 2.1E-4 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 Gene3D G3DSA:3.30.450.20 372 501 4.2E-18 T 14-10-2018 Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 743 847 5.1E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 381 510 2.5E-16 T 14-10-2018 IPR000014 PAS domain Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 SMART SM00387 740 850 5.5E-32 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 SUPERFAMILY SSF55874 686 852 3.14E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 SUPERFAMILY SSF55785 396 511 4.76E-16 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2323 aaa35e8d2ec569167cd18feaccbb007e 860 Gene3D G3DSA:3.30.565.10 699 849 1.1E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3704 f488c62ef9b655c8ff8084a33bff8775 70 Gene3D G3DSA:1.10.1660.10 2 55 3.4E-13 T 14-10-2018 Thimo_3704 f488c62ef9b655c8ff8084a33bff8775 70 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 5 52 1.8E-20 T 14-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 Thimo_3704 f488c62ef9b655c8ff8084a33bff8775 70 SUPERFAMILY SSF46955 4 52 8.24E-10 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Thimo_3704 f488c62ef9b655c8ff8084a33bff8775 70 Pfam PF12728 Helix-turn-helix domain 5 52 1.7E-18 T 14-10-2018 Thimo_2659 ed4c32766fe9985b405715a3fa777143 143 SMART SM01321 11 129 3.2E-36 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_2659 ed4c32766fe9985b405715a3fa777143 143 Pfam PF01797 Transposase IS200 like 12 129 2.5E-34 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_2659 ed4c32766fe9985b405715a3fa777143 143 SUPERFAMILY SSF143422 1 130 9.03E-42 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2659 ed4c32766fe9985b405715a3fa777143 143 Gene3D G3DSA:3.30.70.1290 3 136 6.2E-38 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 4.9E-50 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 Gene3D G3DSA:1.10.1900.20 56 119 1.4E-26 T 14-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 PRINTS PR00062 Ribosomal protein L20 signature 75 101 5.1E-40 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 PRINTS PR00062 Ribosomal protein L20 signature 42 71 5.1E-40 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 PRINTS PR00062 Ribosomal protein L20 signature 12 41 5.1E-40 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.017 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 Gene3D G3DSA:1.10.720.90 2 55 3.2E-26 T 14-10-2018 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 SUPERFAMILY SSF74731 2 117 4.58E-49 T 14-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 Pfam PF00453 Ribosomal protein L20 3 109 1.2E-48 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2825 4b0ee1c20b73a99416428d498a8a6845 120 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 7.0E-20 T 14-10-2018 Thimo_3623 9f47cc7c971abb7cdafd8405d11ad502 455 Gene3D G3DSA:3.30.830.10 242 438 2.6E-54 T 14-10-2018 Thimo_3623 9f47cc7c971abb7cdafd8405d11ad502 455 SUPERFAMILY SSF63411 22 230 1.4E-61 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Thimo_3623 9f47cc7c971abb7cdafd8405d11ad502 455 Gene3D G3DSA:3.30.830.10 18 240 4.9E-81 T 14-10-2018 Thimo_3623 9f47cc7c971abb7cdafd8405d11ad502 455 SUPERFAMILY SSF63411 240 438 6.33E-36 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Thimo_3623 9f47cc7c971abb7cdafd8405d11ad502 455 Pfam PF05193 Peptidase M16 inactive domain 188 370 1.2E-23 T 14-10-2018 IPR007863 Peptidase M16, C-terminal Thimo_3623 9f47cc7c971abb7cdafd8405d11ad502 455 Pfam PF00675 Insulinase (Peptidase family M16) 34 177 1.9E-25 T 14-10-2018 IPR011765 Peptidase M16, N-terminal Thimo_2565 4737a2288b3a372483903c57b16e7076 294 SUPERFAMILY SSF52540 32 246 3.23E-30 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2565 4737a2288b3a372483903c57b16e7076 294 PIRSF PIRSF005624 25 258 6.1E-88 T 14-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 Thimo_2565 4737a2288b3a372483903c57b16e7076 294 PIRSF PIRSF005624 261 293 3500.0 T 14-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 Thimo_2565 4737a2288b3a372483903c57b16e7076 294 Gene3D G3DSA:3.40.50.300 41 252 9.7E-57 T 14-10-2018 Thimo_2565 4737a2288b3a372483903c57b16e7076 294 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 35 244 1.0E-77 T 14-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 Thimo_2565 4737a2288b3a372483903c57b16e7076 294 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 61 222 1.1E-26 T 14-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Pfam PF13840 ACT domain 337 399 3.8E-14 T 14-10-2018 IPR027795 CASTOR, ACT domain Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Pfam PF01842 ACT domain 267 326 2.0E-10 T 14-10-2018 IPR002912 ACT domain Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 402 1.5E-119 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 SUPERFAMILY SSF55021 248 326 1.4E-17 T 14-10-2018 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Gene3D G3DSA:3.40.1160.10 1 254 6.4E-90 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 SUPERFAMILY SSF53633 4 241 4.45E-75 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 PIRSF PIRSF000726 1 62 9.4E-23 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 PIRSF PIRSF000726 58 407 3.0E-142 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Pfam PF00696 Amino acid kinase family 3 229 4.6E-52 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Gene3D G3DSA:3.30.70.260 255 403 5.0E-58 T 14-10-2018 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 Gene3D G3DSA:3.30.70.260 260 338 5.0E-58 T 14-10-2018 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 SUPERFAMILY SSF55021 330 404 1.33E-23 T 14-10-2018 Thimo_2427 6830eddf8455ad7c5d9b9043b6f6d6f4 407 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 402 4.3E-133 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Thimo_2557 e6a1219a0edfff5113a1e2c68ddd4aa3 434 Gene3D G3DSA:2.30.40.10 13 426 4.2E-114 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Thimo_2557 e6a1219a0edfff5113a1e2c68ddd4aa3 434 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 26 428 5.0E-94 T 14-10-2018 Thimo_2557 e6a1219a0edfff5113a1e2c68ddd4aa3 434 SUPERFAMILY SSF51556 60 368 1.76E-84 T 14-10-2018 IPR032466 Metal-dependent hydrolase Thimo_2557 e6a1219a0edfff5113a1e2c68ddd4aa3 434 Gene3D G3DSA:3.20.20.140 61 373 4.2E-114 T 14-10-2018 Thimo_2557 e6a1219a0edfff5113a1e2c68ddd4aa3 434 SUPERFAMILY SSF51338 7 428 7.04E-26 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Thimo_2557 e6a1219a0edfff5113a1e2c68ddd4aa3 434 Pfam PF01979 Amidohydrolase family 56 426 4.3E-15 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Thimo_1860 0a92efe1e058be15219caca719019c41 221 Gene3D G3DSA:3.40.50.80 99 221 4.6E-24 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_1860 0a92efe1e058be15219caca719019c41 221 SUPERFAMILY SSF63380 6 102 3.76E-16 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Thimo_1860 0a92efe1e058be15219caca719019c41 221 PRINTS PR00409 Phthalate dioxygenase reductase family signature 105 124 2.2E-5 T 14-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Thimo_1860 0a92efe1e058be15219caca719019c41 221 PRINTS PR00409 Phthalate dioxygenase reductase family signature 190 198 2.2E-5 T 14-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 Thimo_1860 0a92efe1e058be15219caca719019c41 221 Pfam PF00175 Oxidoreductase NAD-binding domain 106 204 5.6E-12 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Thimo_1860 0a92efe1e058be15219caca719019c41 221 SUPERFAMILY SSF52343 94 220 1.57E-27 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_1860 0a92efe1e058be15219caca719019c41 221 Gene3D G3DSA:2.40.30.10 2 96 9.8E-12 T 14-10-2018 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 SUPERFAMILY SSF54814 180 296 2.88E-39 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 Pfam PF01926 50S ribosome-binding GTPase 9 123 2.0E-22 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 Gene3D G3DSA:3.40.50.300 2 182 2.5E-47 T 14-10-2018 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 Hamap MF_00367 GTPase Era [era]. 4 295 34.935 T 14-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 TIGRFAM TIGR00436 era: GTP-binding protein Era 7 278 1.1E-83 T 14-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 164 4.9E-25 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 Pfam PF07650 KH domain 207 283 7.2E-17 T 14-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 SUPERFAMILY SSF52540 9 202 9.92E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 Gene3D G3DSA:3.30.300.20 184 298 3.0E-39 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 77 95 1.7E-6 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1831 9c9975f6d02d3d2d316b570a90e9ffb9 298 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 9 29 1.7E-6 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1130 5ac2d0f961747948cb3e4887b7cc674b 296 Gene3D G3DSA:3.40.1190.20 8 284 4.2E-70 T 14-10-2018 IPR029056 Ribokinase-like Thimo_1130 5ac2d0f961747948cb3e4887b7cc674b 296 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 27 51 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Thimo_1130 5ac2d0f961747948cb3e4887b7cc674b 296 Pfam PF00294 pfkB family carbohydrate kinase 26 281 3.2E-39 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB Thimo_1130 5ac2d0f961747948cb3e4887b7cc674b 296 SUPERFAMILY SSF53613 10 280 4.21E-49 T 14-10-2018 IPR029056 Ribokinase-like Thimo_1045 165d4aa6a1da7d984fc84baf954b3fee 301 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 77 99 - T 14-10-2018 IPR030470 UbiA prenyltransferase conserved site Thimo_1045 165d4aa6a1da7d984fc84baf954b3fee 301 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 21 297 2.6E-105 T 14-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 Thimo_1045 165d4aa6a1da7d984fc84baf954b3fee 301 Gene3D G3DSA:1.10.357.140 33 178 1.2E-42 T 14-10-2018 Thimo_1045 165d4aa6a1da7d984fc84baf954b3fee 301 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 15 298 30.346 T 14-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 Thimo_1045 165d4aa6a1da7d984fc84baf954b3fee 301 Pfam PF01040 UbiA prenyltransferase family 38 280 8.8E-63 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Thimo_1045 165d4aa6a1da7d984fc84baf954b3fee 301 Gene3D G3DSA:1.20.120.1780 179 299 5.7E-13 T 14-10-2018 Thimo_2233 b1cec4274ccc1d1839cbb64ec3e12ffe 230 PRINTS PR00502 NUDIX hydrolase family signature 58 73 1.4E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Thimo_2233 b1cec4274ccc1d1839cbb64ec3e12ffe 230 PRINTS PR00502 NUDIX hydrolase family signature 44 58 1.4E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Thimo_2233 b1cec4274ccc1d1839cbb64ec3e12ffe 230 SUPERFAMILY SSF55811 8 148 1.9E-40 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_2233 b1cec4274ccc1d1839cbb64ec3e12ffe 230 SUPERFAMILY SSF46785 153 220 1.9E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2233 b1cec4274ccc1d1839cbb64ec3e12ffe 230 Gene3D G3DSA:1.10.10.10 146 222 1.6E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2233 b1cec4274ccc1d1839cbb64ec3e12ffe 230 Pfam PF00293 NUDIX domain 18 136 6.9E-21 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_2233 b1cec4274ccc1d1839cbb64ec3e12ffe 230 ProSitePatterns PS00893 Nudix box signature. 49 70 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Thimo_2233 b1cec4274ccc1d1839cbb64ec3e12ffe 230 Gene3D G3DSA:3.90.79.10 2 142 4.3E-52 T 14-10-2018 Thimo_2071 9114e6411e9ba3c6874aba4b04940506 270 Gene3D G3DSA:1.10.3720.10 57 264 7.6E-20 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2071 9114e6411e9ba3c6874aba4b04940506 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 263 2.2E-30 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_2071 9114e6411e9ba3c6874aba4b04940506 270 SUPERFAMILY SSF161098 62 248 2.49E-23 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 SUPERFAMILY SSF141868 659 906 6.54E-92 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 Gene3D G3DSA:3.30.70.270 469 655 6.2E-58 T 14-10-2018 Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 473 641 1.0E-41 T 14-10-2018 IPR000160 GGDEF domain Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 Pfam PF00563 EAL domain 659 894 8.0E-74 T 14-10-2018 IPR001633 EAL domain Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 Pfam PF00989 PAS fold 356 458 6.4E-13 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 Gene3D G3DSA:3.30.450.20 347 461 2.5E-28 T 14-10-2018 Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 SUPERFAMILY SSF55785 341 462 9.25E-27 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 SUPERFAMILY SSF55073 480 645 1.57E-44 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 SMART SM00267 464 643 3.8E-56 T 14-10-2018 IPR000160 GGDEF domain Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 SMART SM00052 653 899 1.8E-117 T 14-10-2018 IPR001633 EAL domain Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 352 470 6.5E-23 T 14-10-2018 IPR000014 PAS domain Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 Gene3D G3DSA:3.20.20.450 656 910 5.0E-100 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 Pfam PF00990 Diguanylate cyclase, GGDEF domain 475 638 2.9E-43 T 14-10-2018 IPR000160 GGDEF domain Thimo_2921 4789017e8bc596f5c334f0707de5a9fb 917 SMART SM00091 356 422 4.9E-12 T 14-10-2018 IPR000014 PAS domain Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 Gene3D G3DSA:3.30.450.20 72 205 2.0E-45 T 14-10-2018 Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 SUPERFAMILY SSF103190 213 315 8.63E-21 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 Gene3D G3DSA:3.30.70.270 356 522 8.4E-56 T 14-10-2018 Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 SUPERFAMILY SSF55073 367 521 8.63E-46 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 SMART SM00267 351 522 1.7E-57 T 14-10-2018 IPR000160 GGDEF domain Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 Pfam PF00990 Diguanylate cyclase, GGDEF domain 362 517 6.1E-43 T 14-10-2018 IPR000160 GGDEF domain Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 358 522 1.5E-45 T 14-10-2018 IPR000160 GGDEF domain Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 Gene3D G3DSA:3.30.450.20 210 289 1.1E-13 T 14-10-2018 Thimo_0854 de980a1d9ac5c99961ea6632ad0f7eeb 523 SUPERFAMILY SSF103190 37 204 8.89E-50 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_2963 fba9b1370f3cadea63ad7eec1065eca6 132 Gene3D G3DSA:2.10.109.10 13 109 1.8E-14 T 14-10-2018 Thimo_2963 fba9b1370f3cadea63ad7eec1065eca6 132 Pfam PF00717 Peptidase S24-like 25 90 3.9E-6 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Thimo_2963 fba9b1370f3cadea63ad7eec1065eca6 132 SUPERFAMILY SSF51306 20 103 1.03E-15 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 SUPERFAMILY SSF55174 3 206 6.54E-70 T 14-10-2018 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 Gene3D G3DSA:3.10.290.10 95 191 3.2E-77 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 SMART SM01390 3 95 8.6E-44 T 14-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 4.9E-78 T 14-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 34.501 T 14-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 9.9E-30 T 14-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 Pfam PF01479 S4 domain 96 143 6.3E-19 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 Gene3D G3DSA:1.10.1050.10 6 206 3.2E-77 T 14-10-2018 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 SMART SM00363 96 160 2.2E-19 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2835 a00633c19e486e2ef60245e63bc72902 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 14-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 Gene3D G3DSA:4.10.520.10 1 96 3.1E-37 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 SMART SM00411 3 92 4.9E-42 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.9E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.9E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.9E-17 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 30.596 T 14-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 SUPERFAMILY SSF47729 3 92 3.53E-31 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 Pfam PF00216 Bacterial DNA-binding protein 3 91 1.6E-31 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_2822 a8e1c8d1120ba4b97dc5653adff28ce6 99 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 96 2.4E-50 T 14-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 Thimo_0588 43e7807044bce58e352adaec34b80c85 418 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 418 49.276 T 14-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0588 43e7807044bce58e352adaec34b80c85 418 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 43 54 - T 14-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0588 43e7807044bce58e352adaec34b80c85 418 SUPERFAMILY SSF56762 16 418 1.57E-135 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0588 43e7807044bce58e352adaec34b80c85 418 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 6 418 8.8E-179 T 14-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0588 43e7807044bce58e352adaec34b80c85 418 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 418 3.1E-123 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0588 43e7807044bce58e352adaec34b80c85 418 Gene3D G3DSA:1.10.645.20 4 418 6.2E-171 T 14-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 Pfam PF00732 GMC oxidoreductase 109 379 5.0E-32 T 14-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 Pfam PF05199 GMC oxidoreductase 479 616 2.3E-32 T 14-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 Gene3D G3DSA:3.30.560.10 59 560 2.4E-112 T 14-10-2018 Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 338 352 - T 14-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 SUPERFAMILY SSF51905 6 623 3.42E-65 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 SUPERFAMILY SSF54373 417 565 5.23E-23 T 14-10-2018 Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 PIRSF PIRSF000137 1 624 2.8E-134 T 14-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 Gene3D G3DSA:3.50.50.60 7 619 2.4E-112 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3422 9ea4003642d783b609f3d5e10683a39f 624 Pfam PF13450 NAD(P)-binding Rossmann-like domain 11 76 2.5E-6 T 14-10-2018 Thimo_3267 c23eac5320b3c83cecf916c26c1d5b64 820 Pfam PF04453 Organic solvent tolerance protein 370 738 1.0E-89 T 14-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 Thimo_3267 c23eac5320b3c83cecf916c26c1d5b64 820 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 6 801 19.317 T 14-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 Pfam PF12796 Ankyrin repeats (3 copies) 28 117 2.0E-11 T 14-10-2018 IPR020683 Ankyrin repeat-containing domain Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 SMART SM00248 56 85 0.0031 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 SMART SM00248 152 181 0.55 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 SMART SM00248 89 118 0.04 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 SMART SM00248 185 215 44.0 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 PIRSF PIRSF000654 17 129 3.0E-13 T 14-10-2018 Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 PIRSF PIRSF000654 122 232 3.4E-10 T 14-10-2018 Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 SUPERFAMILY SSF48403 27 210 2.87E-38 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 Gene3D G3DSA:1.25.40.20 120 216 1.0E-19 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 Pfam PF13637 Ankyrin repeats (many copies) 154 205 8.5E-8 T 14-10-2018 Thimo_2126 ed7074de09e6294fed828562bf8dbc5a 232 Gene3D G3DSA:1.25.40.20 19 119 2.2E-22 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Thimo_1523 06445cc38f6437f870140cf07cb44c7f 374 Pfam PF01594 AI-2E family transporter 35 347 2.3E-43 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like Thimo_0102 5026e65edfd4713a2372106c8237893e 631 Pfam PF00005 ABC transporter 17 178 6.5E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0102 5026e65edfd4713a2372106c8237893e 631 Pfam PF00005 ABC transporter 328 459 2.2E-19 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0102 5026e65edfd4713a2372106c8237893e 631 Pfam PF12848 ABC transporter 217 298 1.3E-26 T 14-10-2018 IPR032781 ABC-transporter extension domain Thimo_0102 5026e65edfd4713a2372106c8237893e 631 Gene3D G3DSA:3.40.50.300 276 539 4.8E-51 T 14-10-2018 Thimo_0102 5026e65edfd4713a2372106c8237893e 631 Gene3D G3DSA:3.40.50.300 1 259 2.5E-57 T 14-10-2018 Thimo_0102 5026e65edfd4713a2372106c8237893e 631 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0102 5026e65edfd4713a2372106c8237893e 631 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0102 5026e65edfd4713a2372106c8237893e 631 SMART SM00382 337 504 9.5E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0102 5026e65edfd4713a2372106c8237893e 631 SMART SM00382 26 223 6.3E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0102 5026e65edfd4713a2372106c8237893e 631 SUPERFAMILY SSF52540 295 509 3.26E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0102 5026e65edfd4713a2372106c8237893e 631 SUPERFAMILY SSF52540 2 256 4.46E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82714 720 803 3.66E-18 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82693 563 669 2.43E-26 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Pfam PF00873 AcrB/AcrD/AcrF family 2 1025 0.0 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.2090.10 719 807 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:1.20.1640.10 511 1021 0.0 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82866 298 499 2.35E-51 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.70.1440 667 864 0.0 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82866 804 1028 4.05E-47 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 550 567 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.8E-91 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82693 138 332 3.14E-24 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.70.1320 134 334 0.0 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82714 184 272 1.57E-21 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 SUPERFAMILY SSF82693 39 133 2.44E-27 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.70.1430 39 815 0.0 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1029 0.0 T 14-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:3.30.70.1430 565 666 0.0 T 14-10-2018 Thimo_1979 5e04fc4f49e8ebb830c37bd3dad458a3 1048 Gene3D G3DSA:1.20.1640.10 9 510 0.0 T 14-10-2018 Thimo_1530 f19c84ae3f5f804af2857a2965caf546 90 SMART SM00360 2 75 1.1E-29 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Thimo_1530 f19c84ae3f5f804af2857a2965caf546 90 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 72 2.5E-24 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Thimo_1530 f19c84ae3f5f804af2857a2965caf546 90 SUPERFAMILY SSF54928 2 88 3.63E-33 T 14-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 Thimo_1530 f19c84ae3f5f804af2857a2965caf546 90 Gene3D G3DSA:3.30.70.330 1 89 1.3E-31 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 Pfam PF00563 EAL domain 951 1187 9.8E-48 T 14-10-2018 IPR001633 EAL domain Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 Gene3D G3DSA:2.40.10.220 21 125 9.5E-7 T 14-10-2018 Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 SMART SM00052 944 1192 1.6E-56 T 14-10-2018 IPR001633 EAL domain Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 SMART SM00267 761 932 2.1E-31 T 14-10-2018 IPR000160 GGDEF domain Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 SUPERFAMILY SSF141371 22 113 4.71E-7 T 14-10-2018 Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 Pfam PF07793 Protein of unknown function (DUF1631) 418 763 7.2E-32 T 14-10-2018 IPR012434 Protein of unknown function DUF1631 Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 Pfam PF07793 Protein of unknown function (DUF1631) 215 409 7.3E-16 T 14-10-2018 IPR012434 Protein of unknown function DUF1631 Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 SUPERFAMILY SSF141868 951 1195 1.22E-58 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 Pfam PF00990 Diguanylate cyclase, GGDEF domain 777 927 1.7E-23 T 14-10-2018 IPR000160 GGDEF domain Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 Gene3D G3DSA:3.30.70.270 767 933 7.7E-36 T 14-10-2018 Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 SUPERFAMILY SSF55073 778 934 8.63E-33 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 774 931 1.2E-21 T 14-10-2018 IPR000160 GGDEF domain Thimo_2016 4b44dfabb9f6b5345327e8728926b072 1205 Gene3D G3DSA:3.20.20.450 934 1193 3.1E-69 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 186 1.3E-63 T 14-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 Gene3D G3DSA:3.40.50.720 1 202 2.9E-79 T 14-10-2018 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 PIRSF PIRSF000124 1 439 4.7E-151 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 SUPERFAMILY SSF48179 204 301 2.93E-34 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 SUPERFAMILY SSF52413 309 435 3.79E-38 T 14-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 SUPERFAMILY SSF51735 1 194 2.16E-58 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 PIRSF PIRSF500134 1 442 8.6E-188 T 14-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 8.0E-139 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 1.5E-38 T 14-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 Gene3D G3DSA:3.40.50.720 235 444 6.7E-77 T 14-10-2018 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 SMART SM00984 320 424 2.7E-51 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 321 423 1.4E-30 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Thimo_2879 aabd62768a311f4adada9fdc68c5dbbc 445 Gene3D G3DSA:1.20.5.100 203 234 7.0E-17 T 14-10-2018 Thimo_1798 5e333415f4c04ff3ff6f3cc5bfab9488 272 Gene3D G3DSA:3.40.50.150 43 261 3.1E-60 T 14-10-2018 Thimo_1798 5e333415f4c04ff3ff6f3cc5bfab9488 272 Gene3D G3DSA:3.30.46.10 34 219 3.1E-60 T 14-10-2018 Thimo_1798 5e333415f4c04ff3ff6f3cc5bfab9488 272 PIRSF PIRSF000385 24 265 1.5E-31 T 14-10-2018 IPR014369 Glycine/Sarcosine N-methyltransferase GO:0017174 Reactome: R-HSA-2408508|Reactome: R-HSA-389661 Thimo_1798 5e333415f4c04ff3ff6f3cc5bfab9488 272 SUPERFAMILY SSF53335 31 263 1.69E-38 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1798 5e333415f4c04ff3ff6f3cc5bfab9488 272 Pfam PF13649 Methyltransferase domain 64 161 3.0E-14 T 14-10-2018 Thimo_3240 292f3988357ef09261c4b4d28c980434 246 Gene3D G3DSA:3.30.420.130 110 229 3.5E-30 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3240 292f3988357ef09261c4b4d28c980434 246 SUPERFAMILY SSF53146 112 228 7.98E-32 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3240 292f3988357ef09261c4b4d28c980434 246 Pfam PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal 17 100 3.7E-24 T 14-10-2018 IPR031763 Dinitrogenase iron-molybdenum cofactor, N-terminal Thimo_3240 292f3988357ef09261c4b4d28c980434 246 Gene3D G3DSA:1.10.150.590 9 101 1.5E-18 T 14-10-2018 IPR038127 NafY, N-terminal domain superfamily Thimo_3240 292f3988357ef09261c4b4d28c980434 246 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 123 213 1.8E-16 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_3584 42be2f8279d00565388de9e2769f20bf 181 SUPERFAMILY SSF88874 1 175 1.31E-35 T 14-10-2018 Thimo_3584 42be2f8279d00565388de9e2769f20bf 181 Gene3D G3DSA:4.10.1070.10 60 84 9.3E-15 T 14-10-2018 Thimo_3584 42be2f8279d00565388de9e2769f20bf 181 Pfam PF07484 Phage Tail Collar Domain 7 63 4.8E-22 T 14-10-2018 IPR011083 Phage tail collar domain Thimo_3584 42be2f8279d00565388de9e2769f20bf 181 Gene3D G3DSA:3.90.1340.10 5 59 9.3E-15 T 14-10-2018 IPR037053 Phage tail collar domain superfamily Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 60 334 6.5E-89 T 14-10-2018 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 SUPERFAMILY SSF53474 61 332 1.11E-58 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 PRINTS PR00412 Epoxide hydrolase signature 278 294 4.0E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 PRINTS PR00412 Epoxide hydrolase signature 92 110 4.0E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 PRINTS PR00412 Epoxide hydrolase signature 156 169 4.0E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 PRINTS PR00412 Epoxide hydrolase signature 311 333 4.0E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 Pfam PF12697 Alpha/beta hydrolase family 88 328 3.9E-24 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 Gene3D G3DSA:3.40.50.1820 17 336 8.0E-78 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 PRINTS PR00111 Alpha/beta hydrolase fold signature 156 169 4.6E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 PRINTS PR00111 Alpha/beta hydrolase fold signature 280 294 4.6E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1129 19552276befa1f6b17024ad69ab35ba0 346 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 126 4.6E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1553 3e8a3afd4c0b3e20ab34124a16e63434 92 Gene3D G3DSA:1.20.120.20 21 91 3.5E-7 T 14-10-2018 Thimo_1627 ce9232ed01f00e4e6c777bd9ee0485ce 521 Pfam PF05235 CHAD domain 228 459 1.3E-52 T 14-10-2018 IPR007899 CHAD domain Thimo_1627 ce9232ed01f00e4e6c777bd9ee0485ce 521 SMART SM00880 227 493 2.2E-58 T 14-10-2018 IPR007899 CHAD domain Thimo_1627 ce9232ed01f00e4e6c777bd9ee0485ce 521 Gene3D G3DSA:1.40.20.10 204 521 5.7E-89 T 14-10-2018 IPR038186 CHAD domain superfamily Thimo_3111 ad11617f34e04e1a0f8616111b08cd0d 359 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 4 352 2.3E-106 T 14-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3111 ad11617f34e04e1a0f8616111b08cd0d 359 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 5 357 36.818 T 14-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3111 ad11617f34e04e1a0f8616111b08cd0d 359 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 142 2.2E-40 T 14-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3111 ad11617f34e04e1a0f8616111b08cd0d 359 Gene3D G3DSA:3.40.50.2000 1 175 1.1E-63 T 14-10-2018 Thimo_3111 ad11617f34e04e1a0f8616111b08cd0d 359 Gene3D G3DSA:3.40.50.2000 176 340 1.2E-50 T 14-10-2018 Thimo_3111 ad11617f34e04e1a0f8616111b08cd0d 359 SUPERFAMILY SSF53756 4 358 1.05E-120 T 14-10-2018 Thimo_3111 ad11617f34e04e1a0f8616111b08cd0d 359 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 347 5.0E-36 T 14-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 SUPERFAMILY SSF46977 451 587 7.85E-51 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:3.50.50.60 9 415 5.1E-166 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 14-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 587 1.5E-235 T 14-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 Pfam PF00890 FAD binding domain 9 404 6.6E-114 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 587 1.8E-39 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 7 587 2.5E-265 T 14-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:4.10.80.40 547 587 1.9E-11 T 14-10-2018 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:3.90.700.10 246 349 5.1E-166 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 PIRSF PIRSF000171 1 579 7.7E-50 T 14-10-2018 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 SUPERFAMILY SSF56425 236 354 2.54E-43 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 Gene3D G3DSA:1.20.58.100 432 546 2.5E-35 T 14-10-2018 Thimo_0466 6ab6b95075b09314226f2ae81d41d949 587 SUPERFAMILY SSF51905 3 439 1.8E-75 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0894 1d720a700bf9253c52869ab441569742 504 Pfam PF06122 Conjugative relaxosome accessory transposon protein 39 426 1.2E-105 T 14-10-2018 IPR010927 Type IV conjugative transfer system protein TraH Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 SUPERFAMILY SSF56281 1 213 9.94E-34 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 SUPERFAMILY SSF52821 362 463 4.58E-30 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 Pfam PF00581 Rhodanese-like domain 265 352 5.6E-5 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 Pfam PF00581 Rhodanese-like domain 369 456 3.2E-12 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 Gene3D G3DSA:3.60.15.10 1 250 3.2E-54 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 Gene3D G3DSA:3.40.250.10 260 345 1.2E-13 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 Gene3D G3DSA:3.40.250.10 365 463 6.0E-26 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 SMART SM00849 12 184 1.1E-14 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 SUPERFAMILY SSF52821 230 358 1.11E-16 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 SMART SM00450 365 460 4.1E-22 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_0160 7e83a84928ee49c23c8526c6aca967f4 463 SMART SM00450 260 357 2.0 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_3032 19a0d354dcc2dd5713e684a735b4c1ef 200 Pfam PF00849 RNA pseudouridylate synthase 21 165 2.6E-16 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_3032 19a0d354dcc2dd5713e684a735b4c1ef 200 SUPERFAMILY SSF55120 20 197 6.72E-45 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_3032 19a0d354dcc2dd5713e684a735b4c1ef 200 Gene3D G3DSA:3.30.70.1560 85 184 8.0E-39 T 14-10-2018 Thimo_3032 19a0d354dcc2dd5713e684a735b4c1ef 200 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 25 195 1.9E-52 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Thimo_3032 19a0d354dcc2dd5713e684a735b4c1ef 200 Gene3D G3DSA:3.30.70.580 12 84 1.0E-25 T 14-10-2018 Thimo_3032 19a0d354dcc2dd5713e684a735b4c1ef 200 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 56 70 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Thimo_0364 18dacbe6b872a6b3ecf714dcf4624722 317 Pfam PF12146 Serine aminopeptidase, S33 46 282 1.3E-17 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 Thimo_0364 18dacbe6b872a6b3ecf714dcf4624722 317 SUPERFAMILY SSF53474 30 310 3.06E-49 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0364 18dacbe6b872a6b3ecf714dcf4624722 317 Gene3D G3DSA:3.40.50.1820 26 311 1.4E-54 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0364 18dacbe6b872a6b3ecf714dcf4624722 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 72 87 1.7E-7 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0364 18dacbe6b872a6b3ecf714dcf4624722 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 133 146 1.7E-7 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0364 18dacbe6b872a6b3ecf714dcf4624722 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 119 132 1.7E-7 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 Pfam PF14559 Tetratricopeptide repeat 176 224 8.3E-6 T 14-10-2018 Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 SUPERFAMILY SSF48452 48 220 2.59E-22 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 SMART SM00028 155 188 11.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 SMART SM00028 85 118 0.031 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 SMART SM00028 51 84 0.018 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 SMART SM00028 189 222 10.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 Pfam PF13432 Tetratricopeptide repeat 56 119 3.4E-5 T 14-10-2018 Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 16 254 5.7E-61 T 14-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW Thimo_1892 b1ed7ba673ccf7389cf9e9a6eafee272 262 Gene3D G3DSA:1.25.40.10 45 261 2.6E-47 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 Gene3D G3DSA:3.30.230.10 39 170 2.4E-5 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 SUPERFAMILY SSF52540 191 502 1.01E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 SUPERFAMILY SSF54211 12 170 1.37E-29 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 406 498 2.6E-32 T 14-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 SMART SM00382 211 394 1.3E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 7 498 5.3E-194 T 14-10-2018 IPR004482 Mg chelatase-related protein Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 191 397 7.1E-99 T 14-10-2018 IPR000523 Magnesium chelatase ChlI domain Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 319 332 8.3E-6 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 291 305 8.3E-6 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 210 225 8.3E-6 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 343 355 8.3E-6 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 5.5E-42 T 14-10-2018 Thimo_0101 3aaecdab1b936fa3f76cea069600c994 506 Gene3D G3DSA:3.40.50.300 192 500 5.2E-58 T 14-10-2018 Thimo_1639 8ca9cda50995ecff604b3be0b18130e0 220 SUPERFAMILY SSF53335 4 204 1.23E-35 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1639 8ca9cda50995ecff604b3be0b18130e0 220 Pfam PF13489 Methyltransferase domain 31 183 2.4E-18 T 14-10-2018 Thimo_1639 8ca9cda50995ecff604b3be0b18130e0 220 Gene3D G3DSA:3.40.50.150 2 210 1.3E-41 T 14-10-2018 Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49299 624 713 2.75E-17 T 14-10-2018 IPR035986 PKD domain superfamily Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Pfam PF00754 F5/8 type C domain 831 950 7.0E-10 T 14-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49299 150 243 7.19E-9 T 14-10-2018 IPR035986 PKD domain superfamily Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49299 514 624 4.19E-15 T 14-10-2018 IPR035986 PKD domain superfamily Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.10 624 714 8.6E-21 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.10 717 808 4.0E-21 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.10 538 623 3.7E-12 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Pfam PF00801 PKD domain 727 796 1.5E-9 T 14-10-2018 IPR000601 PKD domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Pfam PF00801 PKD domain 634 704 1.8E-9 T 14-10-2018 IPR000601 PKD domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 154 243 1.5E-4 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 538 625 2.0E-10 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 250 342 0.84 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 628 715 3.3E-15 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SMART SM00089 722 809 2.0E-16 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.10 248 345 3.7E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.10 151 247 6.8E-22 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.10 346 443 1.6E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.120.260 824 955 9.2E-14 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.10 444 537 4.6E-5 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49785 830 952 1.01E-14 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Pfam PF13860 FlgD Ig-like domain 1195 1261 4.4E-9 T 14-10-2018 IPR025965 FlgD Ig-like domain Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 SUPERFAMILY SSF49299 720 806 6.93E-18 T 14-10-2018 IPR035986 PKD domain superfamily Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.4070 967 1044 7.8E-6 T 14-10-2018 Thimo_1752 087a8c5c351c30d91d2ad5bbefe25bfc 1277 Gene3D G3DSA:2.60.40.4070 1188 1269 2.0E-11 T 14-10-2018 Thimo_0131 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 PIRSF PIRSF004649 6 210 1.0E-50 T 14-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Thimo_0131 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 Gene3D G3DSA:3.10.450.710 30 208 1.4E-49 T 14-10-2018 Thimo_0131 ccfb880ffaf2d3cd46207cfbd3f70ed2 210 Pfam PF05494 MlaC protein 39 201 1.1E-48 T 14-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Thimo_0422 ba909a94bb97d0fb289c7c54cf3fc543 499 SUPERFAMILY SSF53335 25 289 8.92E-27 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0422 ba909a94bb97d0fb289c7c54cf3fc543 499 Pfam PF07669 Eco57I restriction-modification methylase 144 235 2.3E-8 T 14-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 Thimo_0422 ba909a94bb97d0fb289c7c54cf3fc543 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 30 46 2.7E-11 T 14-10-2018 Thimo_0422 ba909a94bb97d0fb289c7c54cf3fc543 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 171 195 2.7E-11 T 14-10-2018 Thimo_0422 ba909a94bb97d0fb289c7c54cf3fc543 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 55 69 2.7E-11 T 14-10-2018 Thimo_0422 ba909a94bb97d0fb289c7c54cf3fc543 499 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 140 152 2.7E-11 T 14-10-2018 Thimo_0422 ba909a94bb97d0fb289c7c54cf3fc543 499 Gene3D G3DSA:3.40.50.150 17 300 2.4E-24 T 14-10-2018 Thimo_2258 35c62b171eeed4281bf86f65c25e8423 335 SUPERFAMILY SSF55298 119 194 6.9E-5 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_2258 35c62b171eeed4281bf86f65c25e8423 335 SUPERFAMILY SSF55298 231 331 2.86E-10 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_2258 35c62b171eeed4281bf86f65c25e8423 335 Gene3D G3DSA:3.30.1330.40 113 206 1.6E-6 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_2258 35c62b171eeed4281bf86f65c25e8423 335 Gene3D G3DSA:3.30.1330.40 219 333 5.4E-11 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 Pfam PF01018 GTP1/OBG 4 156 1.0E-57 T 14-10-2018 IPR006169 GTP1/OBG domain Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 5.0E-140 T 14-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 Gene3D G3DSA:3.40.50.300 159 338 1.7E-50 T 14-10-2018 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 SUPERFAMILY SSF52540 151 336 1.05E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 Pfam PF01926 50S ribosome-binding GTPase 161 284 3.2E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 Gene3D G3DSA:2.70.210.12 1 158 6.8E-61 T 14-10-2018 IPR036726 GTP1/OBG domain superfamily Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.14 T 14-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 SUPERFAMILY SSF82051 2 157 7.32E-56 T 14-10-2018 IPR036726 GTP1/OBG domain superfamily Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 PIRSF PIRSF002401 1 353 1.3E-131 T 14-10-2018 IPR035101 GTP-binding protein, Obg-type Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 3.5E-32 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 3.5E-32 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 3.5E-32 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 3.5E-32 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1316 819c38bc25f2931d5318378a02b6118e 357 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 14-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 Thimo_3731 39904c20928136f4985a423c0c2f5b9d 120 Pfam PF05717 IS66 Orf2 like protein 9 105 9.1E-34 T 14-10-2018 IPR008878 Transposase IS66, Orf2 Thimo_3717 39904c20928136f4985a423c0c2f5b9d 120 Pfam PF05717 IS66 Orf2 like protein 9 105 9.1E-34 T 14-10-2018 IPR008878 Transposase IS66, Orf2 Thimo_3772 39904c20928136f4985a423c0c2f5b9d 120 Pfam PF05717 IS66 Orf2 like protein 9 105 9.1E-34 T 14-10-2018 IPR008878 Transposase IS66, Orf2 Thimo_0010 39904c20928136f4985a423c0c2f5b9d 120 Pfam PF05717 IS66 Orf2 like protein 9 105 9.1E-34 T 14-10-2018 IPR008878 Transposase IS66, Orf2 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 50.871 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 148 8.3E-66 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 4 317 1.5E-153 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 SUPERFAMILY SSF52096 6 316 2.03E-103 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 5.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 5.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 5.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 5.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 5.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 5.8E-50 T 14-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_0934 b04d7238ca7dcba5495ceb396f7d4ae2 318 Gene3D G3DSA:3.90.226.10 1 318 2.2E-121 T 14-10-2018 Thimo_3562 7f443c1927bdc65cf19b1f89c0b8d025 257 SUPERFAMILY SSF56524 94 256 9.81E-55 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Thimo_3562 7f443c1927bdc65cf19b1f89c0b8d025 257 Gene3D G3DSA:3.90.420.10 79 257 1.6E-55 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Thimo_3562 7f443c1927bdc65cf19b1f89c0b8d025 257 Pfam PF00174 Oxidoreductase molybdopterin binding domain 96 234 1.3E-39 T 14-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Thimo_1322 0b1bbad2f5e55230e0f3650b78c594f3 278 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 14 269 3.2E-120 T 14-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Thimo_1322 0b1bbad2f5e55230e0f3650b78c594f3 278 SUPERFAMILY SSF51569 6 270 1.47E-103 T 14-10-2018 Thimo_1322 0b1bbad2f5e55230e0f3650b78c594f3 278 Pfam PF00793 DAHP synthetase I family 9 268 3.9E-67 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Thimo_1322 0b1bbad2f5e55230e0f3650b78c594f3 278 Gene3D G3DSA:3.20.20.70 2 274 3.5E-102 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1322 0b1bbad2f5e55230e0f3650b78c594f3 278 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 9 271 52.683 T 14-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1032 0.0 T 14-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 SMART SM00481 6 73 1.8E-23 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 SUPERFAMILY SSF89550 5 262 1.79E-17 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 316 730 2.1E-177 T 14-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 Gene3D G3DSA:2.40.50.140 991 1079 1.7E-7 T 14-10-2018 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 Pfam PF14579 Helix-hairpin-helix motif 804 893 1.4E-26 T 14-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 Gene3D G3DSA:3.20.20.140 1 268 1.2E-93 T 14-10-2018 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 Gene3D G3DSA:1.10.10.1600 434 511 3.3E-33 T 14-10-2018 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 Pfam PF01336 OB-fold nucleic acid binding domain 997 1073 1.2E-9 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Thimo_2289 917fa119b230349fb19fc73a6eaac22e 1196 Pfam PF02811 PHP domain 7 171 9.5E-44 T 14-10-2018 IPR004013 PHP domain GO:0003824 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82866 313 510 1.01E-34 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 408 432 9.4E-26 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 9.4E-26 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 354 377 9.4E-26 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 487 510 9.4E-26 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 17 41 9.4E-26 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 PRINTS PR00702 Acriflavin resistance protein family signature 45 63 9.4E-26 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.70.1430 47 848 1.6E-228 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82866 845 1067 9.42E-41 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82693 587 701 8.37E-13 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:1.20.1640.10 22 535 1.6E-228 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82714 751 835 1.14E-9 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.2090.10 189 280 1.6E-228 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82714 194 275 2.49E-14 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.2090.10 750 840 1.6E-228 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:1.20.1640.10 536 1061 1.6E-228 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.70.1440 700 911 1.6E-228 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Pfam PF00873 AcrB/AcrD/AcrF family 20 1061 2.6E-155 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.70.1430 591 699 1.6E-228 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82693 47 141 3.84E-19 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 Gene3D G3DSA:3.30.70.1320 143 348 1.6E-228 T 14-10-2018 Thimo_2057 1207a6c4568092bc3c4a8bb079437280 1077 SUPERFAMILY SSF82693 150 345 4.45E-8 T 14-10-2018 Thimo_2958 74e5e7b0dd573ead7d4ca2845378e298 336 SUPERFAMILY SSF46785 21 100 6.53E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2958 74e5e7b0dd573ead7d4ca2845378e298 336 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 83 2.3E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2958 74e5e7b0dd573ead7d4ca2845378e298 336 Pfam PF03466 LysR substrate binding domain 111 313 2.0E-51 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_2958 74e5e7b0dd573ead7d4ca2845378e298 336 SUPERFAMILY SSF53850 112 317 3.59E-44 T 14-10-2018 Thimo_2958 74e5e7b0dd573ead7d4ca2845378e298 336 Gene3D G3DSA:3.40.190.290 112 323 2.6E-47 T 14-10-2018 Thimo_2958 74e5e7b0dd573ead7d4ca2845378e298 336 Gene3D G3DSA:1.10.10.10 23 110 5.9E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2338 2a2b3840bb9206548607b83b891fea3a 133 Pfam PF09350 Domain of unknown function (DUF1992) 18 84 4.9E-22 T 14-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 Pfam PF08402 TOBE domain 277 318 1.8E-5 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 Gene3D G3DSA:2.40.50.940 223 371 2.7E-24 T 14-10-2018 Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 Pfam PF00005 ABC transporter 21 162 3.5E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 SMART SM00382 29 220 4.0E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 SUPERFAMILY SSF50331 237 378 2.24E-23 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 Gene3D G3DSA:3.40.50.300 4 222 1.2E-61 T 14-10-2018 Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 SUPERFAMILY SSF52540 4 243 1.11E-81 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 Gene3D G3DSA:2.40.50.140 283 362 2.7E-24 T 14-10-2018 Thimo_3430 93b81671ba1bfed46ddf22ac748b2969 381 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 SUPERFAMILY SSF142019 99 311 3.66E-62 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 Pfam PF13375 RnfC Barrel sandwich hybrid domain 17 119 3.3E-40 T 14-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 Gene3D G3DSA:1.10.1060.10 379 451 1.6E-12 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 16 453 2.2E-181 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 144 291 5.5E-52 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 Pfam PF10531 SLBB domain 304 352 4.6E-13 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 SUPERFAMILY SSF46548 342 451 4.88E-20 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 Gene3D G3DSA:3.40.50.11540 149 300 3.4E-16 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 424 435 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 Pfam PF13237 4Fe-4S dicluster domain 384 435 7.4E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 385 396 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 Gene3D G3DSA:3.10.20.600 301 370 6.4E-5 T 14-10-2018 Thimo_0962 b39ffc7690b04d411ddc46067e9a0f7a 560 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 560 187.221 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Thimo_2096 31613c0bc9228abf1a7693d83bed72ea 211 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 204 30.852 T 14-10-2018 IPR007451 High frequency lysogenization protein HflD Thimo_2096 31613c0bc9228abf1a7693d83bed72ea 211 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 10 192 8.0E-38 T 14-10-2018 Thimo_2096 31613c0bc9228abf1a7693d83bed72ea 211 SUPERFAMILY SSF101322 4 205 4.71E-58 T 14-10-2018 IPR035932 HflD-like superfamily Thimo_2096 31613c0bc9228abf1a7693d83bed72ea 211 Pfam PF04356 Protein of unknown function (DUF489) 7 196 7.3E-67 T 14-10-2018 IPR007451 High frequency lysogenization protein HflD Thimo_2096 31613c0bc9228abf1a7693d83bed72ea 211 Gene3D G3DSA:1.10.3890.10 2 208 2.1E-67 T 14-10-2018 IPR035932 HflD-like superfamily Thimo_0700 441807c8838df41a4aaa369707fd015a 211 SMART SM00731 46 199 4.2E-26 T 14-10-2018 IPR006640 SprT-like Thimo_0700 441807c8838df41a4aaa369707fd015a 211 Pfam PF10263 SprT-like family 50 146 2.7E-17 T 14-10-2018 IPR006640 SprT-like Thimo_2029 4ddb560a34dcb804c016c10346a00550 106 SUPERFAMILY SSF46689 3 98 1.42E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2029 4ddb560a34dcb804c016c10346a00550 106 Gene3D G3DSA:1.10.10.10 1 66 5.7E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2029 4ddb560a34dcb804c016c10346a00550 106 Pfam PF01527 Transposase 1 86 1.8E-8 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_1028 4ddb560a34dcb804c016c10346a00550 106 SUPERFAMILY SSF46689 3 98 1.42E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_1028 4ddb560a34dcb804c016c10346a00550 106 Gene3D G3DSA:1.10.10.10 1 66 5.7E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1028 4ddb560a34dcb804c016c10346a00550 106 Pfam PF01527 Transposase 1 86 1.8E-8 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2253 4ddb560a34dcb804c016c10346a00550 106 SUPERFAMILY SSF46689 3 98 1.42E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2253 4ddb560a34dcb804c016c10346a00550 106 Gene3D G3DSA:1.10.10.10 1 66 5.7E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2253 4ddb560a34dcb804c016c10346a00550 106 Pfam PF01527 Transposase 1 86 1.8E-8 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2215 73f87746c3c217645a5e99ad1c702459 250 SUPERFAMILY SSF52540 2 230 5.66E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2215 73f87746c3c217645a5e99ad1c702459 250 Pfam PF00005 ABC transporter 18 172 4.7E-20 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2215 73f87746c3c217645a5e99ad1c702459 250 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 4.3E-108 T 14-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 Thimo_2215 73f87746c3c217645a5e99ad1c702459 250 SMART SM00382 26 238 1.9E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2215 73f87746c3c217645a5e99ad1c702459 250 Gene3D G3DSA:3.40.50.300 1 247 4.6E-58 T 14-10-2018 Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 SMART SM00248 67 96 2.6E-4 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 SMART SM00248 100 129 0.0012 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 SMART SM00248 34 63 210.0 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 SMART SM00248 134 163 6.9E-4 T 14-10-2018 IPR002110 Ankyrin repeat GO:0005515 Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 Gene3D G3DSA:1.25.40.20 116 192 2.4E-19 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 Gene3D G3DSA:1.25.40.20 23 115 1.7E-24 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 Pfam PF13857 Ankyrin repeats (many copies) 132 173 2.8E-7 T 14-10-2018 Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 Pfam PF12796 Ankyrin repeats (3 copies) 39 128 6.3E-16 T 14-10-2018 IPR020683 Ankyrin repeat-containing domain Thimo_1472 d91e96f74a04632cad0e258828ec057e 193 SUPERFAMILY SSF48403 27 186 7.32E-44 T 14-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 SMART SM00922 135 232 6.0E-13 T 14-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 9 325 3.1E-47 T 14-10-2018 Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 113 7.9E-5 T 14-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 5 352 21.809 T 14-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 SUPERFAMILY SSF54826 2 113 5.3E-20 T 14-10-2018 Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 Gene3D G3DSA:3.20.20.120 118 344 5.4E-49 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 Pfam PF13378 Enolase C-terminal domain-like 145 351 6.2E-29 T 14-10-2018 IPR029065 Enolase C-terminal domain-like Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 Gene3D G3DSA:3.30.390.10 3 117 2.9E-26 T 14-10-2018 IPR029017 Enolase-like, N-terminal Thimo_3315 1a18bebe08afa6339c35ac2292431996 364 SUPERFAMILY SSF51604 124 347 6.16E-46 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Thimo_2804 f58b3f66489a9a92d49e588712438fd7 329 Gene3D G3DSA:3.40.50.1980 158 323 3.7E-35 T 14-10-2018 Thimo_2804 f58b3f66489a9a92d49e588712438fd7 329 Gene3D G3DSA:3.40.50.1980 47 156 2.2E-7 T 14-10-2018 Thimo_2804 f58b3f66489a9a92d49e588712438fd7 329 Pfam PF01497 Periplasmic binding protein 71 296 8.1E-20 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain Thimo_2804 f58b3f66489a9a92d49e588712438fd7 329 SUPERFAMILY SSF53807 55 326 2.83E-46 T 14-10-2018 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.6E-34 T 14-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF50465 300 395 1.06E-36 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 1.7E-228 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:2.40.30.10 340 395 7.7E-29 T 14-10-2018 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:2.40.30.10 208 336 3.0E-52 T 14-10-2018 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF52540 5 221 4.91E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF50447 207 303 1.43E-29 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 6.5E-16 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:3.40.50.300 1 205 3.1E-73 T 14-10-2018 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.2E-61 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.281 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 1.1E-16 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Thimo_2862 78c1b8b989485470404f88c7de3db6e8 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.4E-24 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.6E-34 T 14-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF50465 300 395 1.06E-36 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 1.7E-228 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:2.40.30.10 340 395 7.7E-29 T 14-10-2018 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:2.40.30.10 208 336 3.0E-52 T 14-10-2018 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF52540 5 221 4.91E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 SUPERFAMILY SSF50447 207 303 1.43E-29 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 6.5E-16 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 Gene3D G3DSA:3.40.50.300 1 205 3.1E-73 T 14-10-2018 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.2E-61 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.281 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 1.1E-16 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Thimo_2875 78c1b8b989485470404f88c7de3db6e8 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Thimo_3400 5a32e43ff02cebc9fbf6af085fdb9d0c 165 Pfam PF11159 Protein of unknown function (DUF2939) 9 102 1.3E-18 T 14-10-2018 IPR021330 Protein of unknown function DUF2939 Thimo_2098 c63a5dc0393214523d1c5fb0f7c3b958 225 Pfam PF00814 Glycoprotease family 31 149 3.3E-24 T 14-10-2018 IPR000905 Gcp-like domain Thimo_2098 c63a5dc0393214523d1c5fb0f7c3b958 225 Gene3D G3DSA:3.30.420.40 3 218 5.6E-70 T 14-10-2018 Thimo_2098 c63a5dc0393214523d1c5fb0f7c3b958 225 Gene3D G3DSA:3.30.420.40 94 187 5.6E-70 T 14-10-2018 Thimo_2098 c63a5dc0393214523d1c5fb0f7c3b958 225 SUPERFAMILY SSF53067 1 100 1.55E-24 T 14-10-2018 Thimo_2098 c63a5dc0393214523d1c5fb0f7c3b958 225 SUPERFAMILY SSF53067 109 216 8.03E-19 T 14-10-2018 Thimo_2098 c63a5dc0393214523d1c5fb0f7c3b958 225 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 218 3.5E-55 T 14-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 Gene3D G3DSA:1.10.287.130 276 340 3.0E-15 T 14-10-2018 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 499 5.0E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 SMART SM00304 224 276 4.3E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 SUPERFAMILY SSF158472 224 271 2.22E-6 T 14-10-2018 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 SUPERFAMILY SSF55874 330 498 2.36E-39 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 Gene3D G3DSA:3.30.565.10 346 499 8.9E-37 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 478 8.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 497 8.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 439 8.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 453 8.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 SUPERFAMILY SSF47384 262 340 3.53E-14 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 SMART SM00387 388 500 1.3E-33 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 Pfam PF00512 His Kinase A (phospho-acceptor) domain 277 339 4.8E-13 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 Pfam PF00672 HAMP domain 224 272 1.7E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 Gene3D G3DSA:1.20.1480.50 190 275 1.2E-8 T 14-10-2018 Thimo_3426 cabf5ffd7ad708d0730ca4ada2b140ec 500 SMART SM00388 277 341 1.2E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1133 52733210662c844f8811a63bbb4f040d 303 SUPERFAMILY SSF53474 25 298 3.53E-30 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1133 52733210662c844f8811a63bbb4f040d 303 Gene3D G3DSA:3.40.50.1820 9 300 6.3E-47 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1133 52733210662c844f8811a63bbb4f040d 303 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 30 159 4.9E-36 T 14-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 Thimo_1133 52733210662c844f8811a63bbb4f040d 303 Pfam PF10503 Esterase PHB depolymerase 27 230 1.5E-52 T 14-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 Pfam PF00005 ABC transporter 809 863 7.7E-5 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 7 928 0.0 T 14-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.40.50.300 10 598 1.1E-239 T 14-10-2018 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 ProSitePatterns PS00211 ABC transporters family signature. 833 847 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 SUPERFAMILY SSF52540 621 916 2.1E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.40.50.300 618 939 1.3E-140 T 14-10-2018 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 SUPERFAMILY SSF52540 8 573 4.46E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 ProSitePatterns PS00211 ABC transporters family signature. 491 505 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:1.20.1580.10 94 496 1.1E-239 T 14-10-2018 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:1.10.8.280 291 407 1.1E-239 T 14-10-2018 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:1.20.1580.10 696 833 1.3E-140 T 14-10-2018 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 Gene3D G3DSA:3.30.190.20 134 243 1.1E-239 T 14-10-2018 Thimo_2584 dcc36996b19a18b764250b6fd7060fe9 947 Hamap MF_00205 UvrABC system protein A [uvrA]. 5 943 22.683 T 14-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Thimo_3628 fb616e1aae3e70a485d34d374d9424b1 266 Pfam PF08282 haloacid dehalogenase-like hydrolase 8 262 2.1E-51 T 14-10-2018 Thimo_3628 fb616e1aae3e70a485d34d374d9424b1 266 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 7 262 3.4E-49 T 14-10-2018 IPR000150 Cof family GO:0016787 Thimo_3628 fb616e1aae3e70a485d34d374d9424b1 266 Gene3D G3DSA:3.30.1240.10 85 189 8.9E-62 T 14-10-2018 Thimo_3628 fb616e1aae3e70a485d34d374d9424b1 266 SUPERFAMILY SSF56784 3 266 5.68E-62 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_3628 fb616e1aae3e70a485d34d374d9424b1 266 ProSitePatterns PS01229 Hypothetical cof family signature 2. 214 236 - T 14-10-2018 Thimo_3628 fb616e1aae3e70a485d34d374d9424b1 266 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 7 233 3.7E-25 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Thimo_3628 fb616e1aae3e70a485d34d374d9424b1 266 Gene3D G3DSA:3.40.50.1000 8 258 8.9E-62 T 14-10-2018 IPR023214 HAD superfamily Thimo_3143 fbe27bfb3762b527fbc3502a7dd9b9cf 384 Gene3D G3DSA:1.10.287.470 97 170 1.2E-64 T 14-10-2018 Thimo_3143 fbe27bfb3762b527fbc3502a7dd9b9cf 384 SUPERFAMILY SSF111369 51 291 2.88E-66 T 14-10-2018 Thimo_3143 fbe27bfb3762b527fbc3502a7dd9b9cf 384 Gene3D G3DSA:2.40.30.170 56 276 1.2E-64 T 14-10-2018 Thimo_3143 fbe27bfb3762b527fbc3502a7dd9b9cf 384 Gene3D G3DSA:2.40.420.20 277 369 1.7E-20 T 14-10-2018 Thimo_3143 fbe27bfb3762b527fbc3502a7dd9b9cf 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 286 6.0E-12 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_3143 fbe27bfb3762b527fbc3502a7dd9b9cf 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 367 9.3E-76 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_3143 fbe27bfb3762b527fbc3502a7dd9b9cf 384 Gene3D G3DSA:2.40.50.100 62 206 1.2E-64 T 14-10-2018 Thimo_1335 3ce56a8e1d632f869f0210f3bc6f57a0 78 SUPERFAMILY SSF81301 5 75 9.22E-11 T 14-10-2018 Thimo_1335 3ce56a8e1d632f869f0210f3bc6f57a0 78 Pfam PF01909 Nucleotidyltransferase domain 12 69 1.9E-5 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Thimo_1335 3ce56a8e1d632f869f0210f3bc6f57a0 78 Gene3D G3DSA:3.30.460.10 3 78 9.4E-14 T 14-10-2018 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 1.4E-9 T 14-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 Gene3D G3DSA:3.30.460.10 1 121 3.2E-28 T 14-10-2018 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 SUPERFAMILY SSF81891 120 359 7.46E-51 T 14-10-2018 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 Pfam PF01966 HD domain 231 309 2.7E-10 T 14-10-2018 IPR006674 HD domain Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 PIRSF PIRSF000813 1 407 7.5E-192 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 SUPERFAMILY SSF81301 1 119 7.52E-31 T 14-10-2018 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 Pfam PF01743 Poly A polymerase head domain 3 122 5.3E-19 T 14-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 Gene3D G3DSA:1.10.3090.10 122 377 1.8E-36 T 14-10-2018 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 SMART SM00471 224 335 8.4E-4 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 41.449 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Thimo_3398 1c1850951609baec171dfacc0aa0d680 411 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.205 T 14-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Thimo_3513 95796e6bc648c94497a7b26c1d28104b 294 Gene3D G3DSA:3.30.1300.10 184 293 1.7E-27 T 14-10-2018 Thimo_3513 95796e6bc648c94497a7b26c1d28104b 294 Pfam PF02569 Pantoate-beta-alanine ligase 8 282 4.4E-101 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Thimo_3513 95796e6bc648c94497a7b26c1d28104b 294 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 7 284 7.4E-97 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Thimo_3513 95796e6bc648c94497a7b26c1d28104b 294 Gene3D G3DSA:3.40.50.620 3 183 2.6E-77 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3513 95796e6bc648c94497a7b26c1d28104b 294 SUPERFAMILY SSF52374 6 284 1.2E-103 T 14-10-2018 Thimo_3513 95796e6bc648c94497a7b26c1d28104b 294 Hamap MF_00158 Pantothenate synthetase [panC]. 7 284 40.694 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Thimo_2966 90195377f47534eb749514853fc88c8c 179 SUPERFAMILY SSF55021 92 176 5.15E-18 T 14-10-2018 Thimo_2966 90195377f47534eb749514853fc88c8c 179 Gene3D G3DSA:3.30.70.260 91 175 1.4E-19 T 14-10-2018 Thimo_2966 90195377f47534eb749514853fc88c8c 179 Gene3D G3DSA:3.30.70.260 4 87 4.1E-23 T 14-10-2018 Thimo_2966 90195377f47534eb749514853fc88c8c 179 SUPERFAMILY SSF55021 5 84 5.73E-16 T 14-10-2018 Thimo_2966 90195377f47534eb749514853fc88c8c 179 Pfam PF13740 ACT domain 7 80 1.7E-22 T 14-10-2018 Thimo_2966 90195377f47534eb749514853fc88c8c 179 PIRSF PIRSF028103 4 179 5.7E-58 T 14-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 Thimo_1178 64eaabba8a996d568da451e9e326f561 217 Gene3D G3DSA:1.10.10.10 146 213 2.2E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1178 64eaabba8a996d568da451e9e326f561 217 ProSitePatterns PS00042 Crp-type HTH domain signature. 175 198 - T 14-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 Thimo_1178 64eaabba8a996d568da451e9e326f561 217 Gene3D G3DSA:2.60.120.10 13 145 1.6E-39 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_1178 64eaabba8a996d568da451e9e326f561 217 Pfam PF00027 Cyclic nucleotide-binding domain 24 111 1.2E-18 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_1178 64eaabba8a996d568da451e9e326f561 217 SMART SM00100 4 124 3.7E-16 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_1178 64eaabba8a996d568da451e9e326f561 217 Pfam PF00325 Bacterial regulatory proteins, crp family 173 204 3.4E-13 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_1178 64eaabba8a996d568da451e9e326f561 217 SUPERFAMILY SSF46785 146 214 6.96E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1178 64eaabba8a996d568da451e9e326f561 217 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 173 189 1.6E-6 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_1178 64eaabba8a996d568da451e9e326f561 217 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 189 204 1.6E-6 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_1178 64eaabba8a996d568da451e9e326f561 217 SUPERFAMILY SSF51206 12 143 1.7E-25 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_1178 64eaabba8a996d568da451e9e326f561 217 SMART SM00419 167 215 1.4E-11 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_3554 4101213376cf7b35e97b0ed700778ca7 254 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 5 249 3.7E-80 T 14-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 Thimo_3554 4101213376cf7b35e97b0ed700778ca7 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 213 2.5E-29 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Thimo_3554 4101213376cf7b35e97b0ed700778ca7 254 SUPERFAMILY SSF53790 1 244 1.01E-45 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Thimo_3554 4101213376cf7b35e97b0ed700778ca7 254 Gene3D G3DSA:3.40.1010.10 1 115 1.1E-23 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Thimo_3554 4101213376cf7b35e97b0ed700778ca7 254 Gene3D G3DSA:3.30.950.10 116 250 1.0E-44 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Thimo_3666 fe15f17b90879a4b3a19e82d997b3f29 403 SUPERFAMILY SSF56266 11 400 1.83E-132 T 14-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Thimo_3666 fe15f17b90879a4b3a19e82d997b3f29 403 Gene3D G3DSA:3.10.20.340 274 403 5.9E-43 T 14-10-2018 Thimo_3666 fe15f17b90879a4b3a19e82d997b3f29 403 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 20 403 6.0E-113 T 14-10-2018 Thimo_3666 fe15f17b90879a4b3a19e82d997b3f29 403 Pfam PF01960 ArgJ family 16 403 5.7E-141 T 14-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Thimo_3666 fe15f17b90879a4b3a19e82d997b3f29 403 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 11 403 1.5E-122 T 14-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Thimo_3666 fe15f17b90879a4b3a19e82d997b3f29 403 Gene3D G3DSA:3.60.70.12 5 273 5.5E-90 T 14-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Thimo_3666 fe15f17b90879a4b3a19e82d997b3f29 403 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 403 148.757 T 14-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Thimo_1272 3e47cbbbda488f9c51c1139010dc75f9 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.179 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Thimo_1272 3e47cbbbda488f9c51c1139010dc75f9 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 190 2.7E-85 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Thimo_1272 3e47cbbbda488f9c51c1139010dc75f9 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 9.9E-61 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_1272 3e47cbbbda488f9c51c1139010dc75f9 193 PIRSF PIRSF006102 1 193 2.7E-62 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_1682 1b2f2b3c9264f91c24736b5c463c3a46 124 Gene3D G3DSA:1.10.3830.10 5 123 6.9E-36 T 14-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Thimo_1682 1b2f2b3c9264f91c24736b5c463c3a46 124 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 72 83 - T 14-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Thimo_1682 1b2f2b3c9264f91c24736b5c463c3a46 124 Pfam PF01219 Prokaryotic diacylglycerol kinase 19 119 8.0E-33 T 14-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Pfam PF00989 PAS fold 112 160 6.8E-5 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SMART SM00091 109 175 1.3E-6 T 14-10-2018 IPR000014 PAS domain Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SUPERFAMILY SSF55785 110 217 1.45E-8 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Gene3D G3DSA:3.30.70.270 221 396 3.9E-47 T 14-10-2018 Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SMART SM00052 405 657 1.2E-65 T 14-10-2018 IPR001633 EAL domain Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Gene3D G3DSA:3.20.20.450 405 663 2.4E-74 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SUPERFAMILY SSF55073 237 395 4.39E-41 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Pfam PF00990 Diguanylate cyclase, GGDEF domain 234 389 1.7E-31 T 14-10-2018 IPR000160 GGDEF domain Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Pfam PF00563 EAL domain 412 652 3.8E-56 T 14-10-2018 IPR001633 EAL domain Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 233 392 2.9E-31 T 14-10-2018 IPR000160 GGDEF domain Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SMART SM00267 220 393 2.2E-39 T 14-10-2018 IPR000160 GGDEF domain Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 SUPERFAMILY SSF141868 412 659 2.62E-65 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 Gene3D G3DSA:3.30.450.20 109 217 1.2E-12 T 14-10-2018 Thimo_2008 d0e7ad060588f1dad9e9c6f9bdfcc3cc 675 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 111 225 1.2E-7 T 14-10-2018 IPR000014 PAS domain Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 Gene3D G3DSA:3.30.450.40 7 175 7.4E-35 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 SMART SM00065 26 173 2.2E-23 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 408 417 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 SUPERFAMILY SSF52540 195 436 1.5E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 TIGRFAM TIGR01817 nifA: Nif-specific regulatory protein 9 515 3.6E-212 T 14-10-2018 IPR010113 Nif-specific regulatory protein GO:0003700|GO:0006355|GO:0009399 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 Gene3D G3DSA:1.10.10.60 468 515 8.8E-10 T 14-10-2018 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 SUPERFAMILY SSF55781 9 163 7.85E-20 T 14-10-2018 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 Gene3D G3DSA:1.10.8.60 368 439 6.1E-22 T 14-10-2018 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 474 491 7.9E-8 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 491 511 7.9E-8 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 282 297 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 220 233 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 Gene3D G3DSA:3.40.50.300 182 367 2.6E-68 T 14-10-2018 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 Pfam PF13185 GAF domain 25 163 3.2E-11 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 Pfam PF02954 Bacterial regulatory protein, Fis family 472 506 7.3E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 SMART SM00382 216 359 1.4E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1274 b6413a8dcb31a1a52e0de681522a57bf 515 Pfam PF00158 Sigma-54 interaction domain 196 362 1.2E-73 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_0658 b78e40d8524826060aaac16dedd68974 693 Pfam PF01841 Transglutaminase-like superfamily 370 486 3.9E-18 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_0658 b78e40d8524826060aaac16dedd68974 693 Gene3D G3DSA:3.10.620.30 348 507 1.4E-11 T 14-10-2018 Thimo_0658 b78e40d8524826060aaac16dedd68974 693 Pfam PF11992 Domain of unknown function (DUF3488) 6 330 1.8E-76 T 14-10-2018 IPR021878 Protein of unknown function DUF3488 Thimo_0658 b78e40d8524826060aaac16dedd68974 693 SMART SM00460 417 488 4.4E-13 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_0658 b78e40d8524826060aaac16dedd68974 693 Pfam PF13559 Domain of unknown function (DUF4129) 619 678 1.0E-6 T 14-10-2018 IPR025403 Domain of unknown function DUF4129 Thimo_0658 b78e40d8524826060aaac16dedd68974 693 SUPERFAMILY SSF54001 341 640 2.66E-31 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Thimo_1251 3f32278d66c320952f5fd16a7cacd834 180 Gene3D G3DSA:2.40.50.140 1 72 6.3E-18 T 14-10-2018 Thimo_1251 3f32278d66c320952f5fd16a7cacd834 180 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 2.0E-10 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Thimo_1251 3f32278d66c320952f5fd16a7cacd834 180 SUPERFAMILY SSF50249 1 71 1.27E-13 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1251 3f32278d66c320952f5fd16a7cacd834 180 Pfam PF05901 Excalibur calcium-binding domain 142 174 5.4E-11 T 14-10-2018 IPR008613 Excalibur calcium-binding domain Thimo_1251 3f32278d66c320952f5fd16a7cacd834 180 SMART SM00357 4 68 6.1E-4 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Thimo_3566 928ce74b5924280e0bbd0a11b6838cfe 858 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 538 829 7.6E-91 T 14-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal Thimo_3566 928ce74b5924280e0bbd0a11b6838cfe 858 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 19 296 1.6E-14 T 14-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Thimo_3566 928ce74b5924280e0bbd0a11b6838cfe 858 SUPERFAMILY SSF55729 648 827 5.3E-14 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_1325 982d84c7fead927f619694d8469a9eba 236 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 105 112 - T 14-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Thimo_1325 982d84c7fead927f619694d8469a9eba 236 Gene3D G3DSA:3.90.550.10 4 234 1.4E-72 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1325 982d84c7fead927f619694d8469a9eba 236 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 231 9.2E-72 T 14-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Thimo_1325 982d84c7fead927f619694d8469a9eba 236 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 6 229 43.551 T 14-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Thimo_1325 982d84c7fead927f619694d8469a9eba 236 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 228 5.2E-71 T 14-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Thimo_1325 982d84c7fead927f619694d8469a9eba 236 SUPERFAMILY SSF53448 7 230 1.6E-57 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1054 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:2.170.170.11 135 264 1.0E-269 T 14-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Thimo_1054 017b1ca414665f6183cb19e244476812 725 Hamap MF_00641 Malate synthase G [glcB]. 1 725 383.886 T 14-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Thimo_1054 017b1ca414665f6183cb19e244476812 725 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 721 0.0 T 14-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Thimo_1054 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:1.20.1220.12 585 725 2.2E-70 T 14-10-2018 Thimo_1054 017b1ca414665f6183cb19e244476812 725 SUPERFAMILY SSF51645 2 722 2.62E-293 T 14-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Thimo_1054 017b1ca414665f6183cb19e244476812 725 Pfam PF01274 Malate synthase 18 692 1.2E-158 T 14-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Thimo_1054 017b1ca414665f6183cb19e244476812 725 Gene3D G3DSA:3.20.20.360 8 581 1.0E-269 T 14-10-2018 Thimo_3037 d9ed87de4272aa4afc65e0f09723341d 381 PRINTS PR00412 Epoxide hydrolase signature 139 154 1.9E-13 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_3037 d9ed87de4272aa4afc65e0f09723341d 381 PRINTS PR00412 Epoxide hydrolase signature 119 137 1.9E-13 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_3037 d9ed87de4272aa4afc65e0f09723341d 381 PRINTS PR00412 Epoxide hydrolase signature 356 378 1.9E-13 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_3037 d9ed87de4272aa4afc65e0f09723341d 381 PRINTS PR00412 Epoxide hydrolase signature 189 202 1.9E-13 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_3037 d9ed87de4272aa4afc65e0f09723341d 381 Gene3D G3DSA:3.40.50.1820 89 378 5.1E-55 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3037 d9ed87de4272aa4afc65e0f09723341d 381 Pfam PF12697 Alpha/beta hydrolase family 115 364 1.0E-14 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3037 d9ed87de4272aa4afc65e0f09723341d 381 SUPERFAMILY SSF53474 92 380 2.49E-46 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1114 7aab563c8b8cb27831e13e023224d083 343 Pfam PF13519 von Willebrand factor type A domain 99 207 1.1E-13 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_1114 7aab563c8b8cb27831e13e023224d083 343 SUPERFAMILY SSF53300 99 281 2.43E-18 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1114 7aab563c8b8cb27831e13e023224d083 343 SMART SM00327 95 292 4.9E-8 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_1114 7aab563c8b8cb27831e13e023224d083 343 Gene3D G3DSA:3.40.50.410 94 295 4.8E-36 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.2E-42 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 PIRSF PIRSF039144 1 112 3.6E-53 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 Gene3D G3DSA:3.30.70.120 1 112 3.3E-46 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 14-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 SMART SM00938 4 105 4.1E-64 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 SUPERFAMILY SSF54913 1 112 2.54E-45 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 14-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 PRINTS PR00340 P-II protein signature 2 17 4.6E-42 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 PRINTS PR00340 P-II protein signature 83 103 4.6E-42 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 PRINTS PR00340 P-II protein signature 52 75 4.6E-42 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_0098 7d7735dc3e6c80519ca7cf889de861ef 112 PRINTS PR00340 P-II protein signature 23 41 4.6E-42 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_3209 02038e728d5d7d0e31208c9424803c9d 149 Pfam PF02643 Uncharacterized ACR, COG1430 39 139 1.0E-32 T 14-10-2018 IPR003795 Protein of unknown function DUF192 Thimo_3209 02038e728d5d7d0e31208c9424803c9d 149 Gene3D G3DSA:2.60.120.1140 22 147 7.5E-40 T 14-10-2018 IPR038695 Saro_0823-like superfamily Thimo_2324 722d6e337a79996168aee791c71e4ced 205 SMART SM00448 5 116 7.3E-32 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 SMART SM00421 140 197 9.7E-24 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 2.3E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 2.3E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 2.3E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 SUPERFAMILY SSF52172 7 153 2.13E-36 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2324 722d6e337a79996168aee791c71e4ced 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 197 1.6E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 Gene3D G3DSA:3.40.50.2300 1 132 4.9E-51 T 14-10-2018 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 ProSitePatterns PS00622 LuxR-type HTH domain signature. 157 184 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 Gene3D G3DSA:1.10.10.10 134 198 9.9E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2324 722d6e337a79996168aee791c71e4ced 205 SUPERFAMILY SSF46894 130 198 6.8E-21 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_2324 722d6e337a79996168aee791c71e4ced 205 Pfam PF00072 Response regulator receiver domain 7 116 1.9E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3461 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Gene3D G3DSA:3.90.1570.50 113 273 1.1E-6 T 14-10-2018 Thimo_3461 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 116 219 3.9E-10 T 14-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 Thimo_3461 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Pfam PF04851 Type III restriction enzyme, res subunit 291 451 1.9E-13 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Thimo_3461 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Gene3D G3DSA:3.40.50.300 291 473 3.2E-26 T 14-10-2018 Thimo_3461 2b54c22cfdedcaa0d79e4fa104a8693f 1028 Gene3D G3DSA:3.40.50.300 532 760 1.7E-17 T 14-10-2018 Thimo_3461 2b54c22cfdedcaa0d79e4fa104a8693f 1028 SMART SM00487 287 532 3.8E-11 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_3461 2b54c22cfdedcaa0d79e4fa104a8693f 1028 SUPERFAMILY SSF52540 290 544 2.71E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 SMART SM00490 277 358 3.8E-33 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 Pfam PF00270 DEAD/DEAH box helicase 48 212 1.9E-46 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 SMART SM00487 43 241 3.7E-62 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 Pfam PF00271 Helicase conserved C-terminal domain 250 358 1.6E-28 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 Gene3D G3DSA:3.40.50.300 17 230 4.6E-75 T 14-10-2018 Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 172 180 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 19 577 43.767 T 14-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 Pfam PF03880 DbpA RNA binding domain 506 574 1.6E-22 T 14-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 SUPERFAMILY SSF52540 93 379 6.41E-76 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 Gene3D G3DSA:3.30.70.330 506 579 3.5E-13 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_2134 b66955c07e7c61ec1bf69100008a5f6c 629 Gene3D G3DSA:3.40.50.300 233 450 1.4E-50 T 14-10-2018 Thimo_3180 1069112df345db158cd9fb785371460d 357 Pfam PF00005 ABC transporter 20 161 1.3E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_3180 1069112df345db158cd9fb785371460d 357 SUPERFAMILY SSF52540 16 241 2.25E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3180 1069112df345db158cd9fb785371460d 357 Gene3D G3DSA:3.40.50.300 15 239 1.4E-57 T 14-10-2018 Thimo_3180 1069112df345db158cd9fb785371460d 357 SMART SM00382 26 211 1.3E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 Gene3D G3DSA:3.30.420.40 1 198 8.5E-70 T 14-10-2018 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 Gene3D G3DSA:3.30.420.40 199 399 5.0E-83 T 14-10-2018 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 3 14 4.4E-46 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 302 315 4.4E-46 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 379 391 4.4E-46 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 324 340 4.4E-46 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 176 189 4.4E-46 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 PRINTS PR00471 Acetate kinase family signature 206 227 4.4E-46 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 Pfam PF00871 Acetokinase family 2 392 1.9E-145 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 PIRSF PIRSF000722 1 399 2.8E-147 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 SUPERFAMILY SSF53067 160 396 5.74E-89 T 14-10-2018 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 Hamap MF_00020 Acetate kinase [ackA]. 1 399 177.576 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 SUPERFAMILY SSF53067 1 199 2.4E-64 T 14-10-2018 Thimo_1934 2189f608ba30712b30ee53004fb20d64 399 TIGRFAM TIGR00016 ackA: acetate kinase 1 395 8.6E-146 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Thimo_0015 f173a20edc6fdbb0c945daa3e730cd15 344 Pfam PF00535 Glycosyl transferase family 2 6 165 2.1E-24 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Thimo_0015 f173a20edc6fdbb0c945daa3e730cd15 344 Gene3D G3DSA:3.90.550.10 1 234 1.0E-44 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0015 f173a20edc6fdbb0c945daa3e730cd15 344 SUPERFAMILY SSF53448 3 256 1.94E-37 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 99 121 4.0E-5 T 14-10-2018 Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 483 498 4.0E-5 T 14-10-2018 Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 Gene3D G3DSA:3.50.50.60 99 495 9.9E-111 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 SUPERFAMILY SSF56425 322 444 1.5E-22 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PIRSF PIRSF000171 92 528 1.3E-29 T 14-10-2018 Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 Pfam PF00890 FAD binding domain 99 483 1.2E-71 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 119 1.7E-9 T 14-10-2018 Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 447 469 1.7E-9 T 14-10-2018 Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 SUPERFAMILY SSF51905 92 506 1.38E-63 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0246 8c8d2d9e62d70ab3fcad19225f64dcf8 572 Gene3D G3DSA:3.90.700.10 332 450 9.9E-111 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_1021 5ecb3fb181c62a5e3c7bf0b16a983164 283 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 32 258 1.7E-27 T 14-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system Thimo_1021 5ecb3fb181c62a5e3c7bf0b16a983164 283 Gene3D G3DSA:3.10.450.620 17 81 9.9E-6 T 14-10-2018 Thimo_2470 7aaf84b4868bf5d08918ef91ad5ba138 453 Pfam PF10011 Predicted membrane protein (DUF2254) 13 387 4.0E-122 T 14-10-2018 IPR018723 Protein of unknown function DUF2254, membrane Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.40.640.10 810 984 8.5E-142 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 640 667 - T 14-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:2.20.25.90 6 69 9.6E-7 T 14-10-2018 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Pfam PF00266 Aminotransferase class-V 753 1113 2.2E-76 T 14-10-2018 IPR000192 Aminotransferase class V domain Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.30.2070.10 458 537 9.5E-132 T 14-10-2018 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.40.50.740 78 501 9.5E-132 T 14-10-2018 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 SMART SM00926 11 64 2.6E-7 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 SUPERFAMILY SSF53383 752 1121 4.87E-105 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Pfam PF00384 Molybdopterin oxidoreductase 67 497 8.7E-60 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:2.40.40.20 574 722 3.1E-35 T 14-10-2018 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.90.1150.10 753 1117 8.5E-142 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 SUPERFAMILY SSF50692 563 722 6.33E-35 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Pfam PF01568 Molydopterin dinucleotide binding domain 609 715 2.2E-21 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:1.10.260.50 764 1027 8.5E-142 T 14-10-2018 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 Gene3D G3DSA:3.40.228.10 156 571 9.5E-132 T 14-10-2018 Thimo_2170 0e4b7201e21aed35932b88db1df6dcf2 1135 SUPERFAMILY SSF53706 15 603 2.49E-142 T 14-10-2018 Thimo_0571 47b8b8f496c97cff630e5a3be3c9adbc 229 Pfam PF01618 MotA/TolQ/ExbB proton channel family 81 208 3.9E-42 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Thimo_0571 47b8b8f496c97cff630e5a3be3c9adbc 229 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 5 225 43.745 T 14-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 Thimo_0571 47b8b8f496c97cff630e5a3be3c9adbc 229 TIGRFAM TIGR02796 tolQ: protein TolQ 7 220 1.5E-88 T 14-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 Thimo_2386 df343765982eb18586692f779a46c353 431 SMART SM00788 4 424 1.6E-282 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Thimo_2386 df343765982eb18586692f779a46c353 431 Gene3D G3DSA:3.90.170.10 267 431 6.0E-67 T 14-10-2018 Thimo_2386 df343765982eb18586692f779a46c353 431 SUPERFAMILY SSF52540 3 429 1.38E-172 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2386 df343765982eb18586692f779a46c353 431 Gene3D G3DSA:3.40.440.10 6 249 3.8E-98 T 14-10-2018 Thimo_2386 df343765982eb18586692f779a46c353 431 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 14-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Thimo_2386 df343765982eb18586692f779a46c353 431 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 14-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Thimo_2386 df343765982eb18586692f779a46c353 431 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 431 207.388 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Thimo_2386 df343765982eb18586692f779a46c353 431 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 2.7E-181 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Thimo_2386 df343765982eb18586692f779a46c353 431 Pfam PF00709 Adenylosuccinate synthetase 5 423 1.7E-174 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Thimo_2386 df343765982eb18586692f779a46c353 431 Gene3D G3DSA:1.10.300.10 102 201 3.8E-98 T 14-10-2018 Thimo_1288 d54336047577e65047921d762de5d24d 389 Pfam PF11795 Uncharacterized protein conserved in bacteria N-term (DUF3322) 9 189 8.8E-52 T 14-10-2018 IPR024537 Domain of unknown function DUF3322 Thimo_1288 d54336047577e65047921d762de5d24d 389 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 205 382 2.9E-53 T 14-10-2018 IPR024534 Domain of unknown function DUF2220 Thimo_1288 d54336047577e65047921d762de5d24d 389 PIRSF PIRSF028408 5 389 3.5E-67 T 14-10-2018 IPR014544 Uncharacterised conserved protein UCP028408 Thimo_2442 a0cea3f07834ae1459a4517f8df07810 161 PIRSF PIRSF006181 4 161 3.0E-39 T 14-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Thimo_2442 a0cea3f07834ae1459a4517f8df07810 161 Gene3D G3DSA:3.90.960.10 2 160 4.3E-41 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Thimo_2442 a0cea3f07834ae1459a4517f8df07810 161 SUPERFAMILY SSF55826 9 158 2.88E-36 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Thimo_2442 a0cea3f07834ae1459a4517f8df07810 161 Pfam PF04073 Aminoacyl-tRNA editing domain 36 148 9.9E-24 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Thimo_0522 9445f2228902079ff5141438eff2ef73 55 Pfam PF13711 Domain of unknown function (DUF4160) 9 55 2.0E-15 T 14-10-2018 IPR025427 Protein of unknown function DUF4160 Thimo_1543 8990bb37202b9864a210b0edbb266d33 399 SUPERFAMILY SSF161098 89 157 5.1E-13 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1543 8990bb37202b9864a210b0edbb266d33 399 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 89 153 1.5E-17 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Thimo_1543 8990bb37202b9864a210b0edbb266d33 399 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 394 1.0E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_1543 8990bb37202b9864a210b0edbb266d33 399 SUPERFAMILY SSF161098 192 380 1.1E-25 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1543 8990bb37202b9864a210b0edbb266d33 399 Gene3D G3DSA:1.10.3720.10 188 396 9.9E-35 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1543 8990bb37202b9864a210b0edbb266d33 399 Gene3D G3DSA:1.10.3720.10 76 181 2.6E-15 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0842 73f50b5cf660f1a224e6e519890cbea0 300 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0842 73f50b5cf660f1a224e6e519890cbea0 300 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 264 2.7E-13 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0842 73f50b5cf660f1a224e6e519890cbea0 300 SUPERFAMILY SSF52540 1 285 2.06E-29 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0842 73f50b5cf660f1a224e6e519890cbea0 300 Pfam PF14697 4Fe-4S dicluster domain 61 115 9.5E-9 T 14-10-2018 Thimo_0842 73f50b5cf660f1a224e6e519890cbea0 300 Gene3D G3DSA:3.30.70.20 59 119 1.9E-12 T 14-10-2018 Thimo_1970 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 SUPERFAMILY SSF52821 9 121 6.68E-32 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_1970 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 SMART SM00450 21 118 9.6E-26 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_1970 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 Gene3D G3DSA:3.40.250.10 21 123 4.2E-28 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_1970 c70b9afa0ae919e512eb0c8c8aeb5ffb 123 Pfam PF00581 Rhodanese-like domain 27 114 3.5E-14 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_0382 70acc1b30012231ebf109234e4518d20 572 SUPERFAMILY SSF52518 3 177 3.28E-66 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0382 70acc1b30012231ebf109234e4518d20 572 SUPERFAMILY SSF52518 371 568 2.47E-68 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0382 70acc1b30012231ebf109234e4518d20 572 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 3 564 9.6E-260 T 14-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Thimo_0382 70acc1b30012231ebf109234e4518d20 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 542 1.8E-48 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Thimo_0382 70acc1b30012231ebf109234e4518d20 572 Gene3D G3DSA:3.40.50.970 364 569 7.5E-65 T 14-10-2018 Thimo_0382 70acc1b30012231ebf109234e4518d20 572 SUPERFAMILY SSF52467 188 361 2.89E-66 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_0382 70acc1b30012231ebf109234e4518d20 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 328 4.6E-45 T 14-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Thimo_0382 70acc1b30012231ebf109234e4518d20 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 7.6E-60 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Thimo_0382 70acc1b30012231ebf109234e4518d20 572 Gene3D G3DSA:3.40.50.970 1 176 4.6E-74 T 14-10-2018 Thimo_0382 70acc1b30012231ebf109234e4518d20 572 Gene3D G3DSA:3.40.50.1220 189 359 2.2E-61 T 14-10-2018 Thimo_3188 d71c05be193933c9b0ec425921d85d1a 182 SUPERFAMILY SSF56524 32 178 1.44E-15 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Thimo_3188 d71c05be193933c9b0ec425921d85d1a 182 Pfam PF00174 Oxidoreductase molybdopterin binding domain 36 179 1.2E-7 T 14-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Thimo_3188 d71c05be193933c9b0ec425921d85d1a 182 Gene3D G3DSA:3.90.420.10 27 181 2.0E-7 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Thimo_1444 7e853ef702e2ea589d84d614bdf8f08d 611 Pfam PF07715 TonB-dependent Receptor Plug Domain 42 147 3.2E-30 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain Thimo_1444 7e853ef702e2ea589d84d614bdf8f08d 611 Pfam PF00593 TonB dependent receptor 231 609 2.6E-50 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Thimo_1444 7e853ef702e2ea589d84d614bdf8f08d 611 Gene3D G3DSA:2.170.130.10 27 152 3.7E-39 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Thimo_1444 7e853ef702e2ea589d84d614bdf8f08d 611 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 12 610 7.3E-213 T 14-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 Thimo_1444 7e853ef702e2ea589d84d614bdf8f08d 611 Gene3D G3DSA:2.40.170.20 158 611 2.0E-130 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Thimo_1444 7e853ef702e2ea589d84d614bdf8f08d 611 SUPERFAMILY SSF56935 28 609 6.11E-128 T 14-10-2018 Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 Gene3D G3DSA:3.40.47.10 1 255 1.5E-91 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 3.4E-41 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 246 2.1E-60 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 SUPERFAMILY SSF53901 215 411 1.25E-76 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 410 8.6E-198 T 14-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 Gene3D G3DSA:3.40.47.10 257 401 1.9E-58 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 PIRSF PIRSF000447 1 412 7.3E-186 T 14-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 SUPERFAMILY SSF53901 4 252 3.46E-78 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_2378 6689cb4eff95d1b6eeff390d287726ac 412 SMART SM00825 Beta-ketoacyl synthase 6 412 9.7E-19 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Thimo_2091 69468c024c92761fbc54af30eda7f368 72 Gene3D G3DSA:2.40.50.140 1 72 2.8E-36 T 14-10-2018 Thimo_2091 69468c024c92761fbc54af30eda7f368 72 SMART SM00316 2 72 3.9E-4 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_2091 69468c024c92761fbc54af30eda7f368 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.588 T 14-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Thimo_2091 69468c024c92761fbc54af30eda7f368 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.8E-28 T 14-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 Thimo_2091 69468c024c92761fbc54af30eda7f368 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 9.4E-39 T 14-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Thimo_2091 69468c024c92761fbc54af30eda7f368 72 SUPERFAMILY SSF50249 1 70 9.64E-29 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1947 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 54 86 2.0E-9 T 14-10-2018 IPR001646 Pentapeptide repeat Thimo_1947 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 201 235 4.0E-8 T 14-10-2018 IPR001646 Pentapeptide repeat Thimo_1947 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 95 134 1.5E-10 T 14-10-2018 IPR001646 Pentapeptide repeat Thimo_1947 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 243 271 3.1E-4 T 14-10-2018 IPR001646 Pentapeptide repeat Thimo_1947 f395558857fdc5915672b3578297e616 284 Pfam PF00805 Pentapeptide repeats (8 copies) 155 188 1.7E-7 T 14-10-2018 IPR001646 Pentapeptide repeat Thimo_1947 f395558857fdc5915672b3578297e616 284 SUPERFAMILY SSF141571 18 132 9.16E-26 T 14-10-2018 Thimo_1947 f395558857fdc5915672b3578297e616 284 Gene3D G3DSA:2.160.20.80 197 276 4.6E-15 T 14-10-2018 Thimo_1947 f395558857fdc5915672b3578297e616 284 Gene3D G3DSA:2.160.20.80 7 127 1.4E-28 T 14-10-2018 Thimo_1947 f395558857fdc5915672b3578297e616 284 Gene3D G3DSA:2.160.20.100 128 196 1.2E-14 T 14-10-2018 Thimo_1947 f395558857fdc5915672b3578297e616 284 SUPERFAMILY SSF141571 201 270 1.44E-15 T 14-10-2018 Thimo_0060 2e4be23a855847f80005b54817738913 509 SUPERFAMILY SSF56317 224 482 7.06E-41 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_0060 2e4be23a855847f80005b54817738913 509 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 452 3.7E-96 T 14-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Thimo_0060 2e4be23a855847f80005b54817738913 509 Pfam PF00795 Carbon-nitrogen hydrolase 229 471 2.2E-34 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Thimo_0060 2e4be23a855847f80005b54817738913 509 Gene3D G3DSA:3.60.110.10 233 480 6.7E-18 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_0060 2e4be23a855847f80005b54817738913 509 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 490 22.614 T 14-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Thimo_0840 b0c19a01bf17bddfb9f3754acdd5964a 259 Hamap MF_00674 UPF0251 protein . 2 98 24.245 T 14-10-2018 IPR002852 Uncharacterised protein family UPF0251 Thimo_0840 b0c19a01bf17bddfb9f3754acdd5964a 259 SUPERFAMILY SSF53146 138 256 3.53E-26 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_0840 b0c19a01bf17bddfb9f3754acdd5964a 259 Gene3D G3DSA:3.30.420.130 134 251 5.4E-29 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_0840 b0c19a01bf17bddfb9f3754acdd5964a 259 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 150 240 1.8E-17 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_0840 b0c19a01bf17bddfb9f3754acdd5964a 259 Pfam PF02001 Protein of unknown function DUF134 3 94 2.9E-21 T 14-10-2018 IPR002852 Uncharacterised protein family UPF0251 Thimo_3048 afa7cc8a830566882d967bbd4ac61d6b 109 Gene3D G3DSA:2.20.28.30 1 44 3.5E-6 T 14-10-2018 Thimo_3048 afa7cc8a830566882d967bbd4ac61d6b 109 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 2.4E-22 T 14-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Thimo_3048 afa7cc8a830566882d967bbd4ac61d6b 109 Pfam PF09723 Zinc ribbon domain 1 41 1.0E-17 T 14-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Thimo_3048 afa7cc8a830566882d967bbd4ac61d6b 109 SMART SM00834 1 42 5.9E-21 T 14-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF109604 413 540 1.76E-13 T 14-10-2018 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF81593 187 301 3.69E-10 T 14-10-2018 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF81301 21 168 8.59E-19 T 14-10-2018 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 SMART SM00471 445 592 1.1E-7 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 29 869 8.1E-273 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 Pfam PF08335 GlnD PII-uridylyltransferase 173 312 9.8E-36 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 Gene3D G3DSA:1.10.3210.10 430 572 2.3E-7 T 14-10-2018 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF55021 795 863 2.01E-8 T 14-10-2018 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 Pfam PF01966 HD domain 474 572 3.6E-9 T 14-10-2018 IPR006674 HD domain Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 PIRSF PIRSF006288 2 873 0.0 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 Pfam PF01909 Nucleotidyltransferase domain 54 95 6.1E-5 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 874 298.316 T 14-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Thimo_0717 97f25505ed16f0e86e70f4991a26434e 874 SUPERFAMILY SSF55021 688 767 2.54E-8 T 14-10-2018 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 SUPERFAMILY SSF46689 352 448 1.52E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 Pfam PF02954 Bacterial regulatory protein, Fis family 405 445 2.4E-14 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 Gene3D G3DSA:3.40.50.300 132 308 4.3E-60 T 14-10-2018 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 351 360 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_2191 ea6912376c1d614685b524011b61cefc 448 Gene3D G3DSA:3.40.50.2300 1 131 1.4E-34 T 14-10-2018 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 Gene3D G3DSA:1.10.8.60 309 385 8.2E-21 T 14-10-2018 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 SMART SM00382 158 300 5.6E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2191 ea6912376c1d614685b524011b61cefc 448 SUPERFAMILY SSF52540 138 379 2.25E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2191 ea6912376c1d614685b524011b61cefc 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 428 448 1.4E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 411 428 1.4E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 Pfam PF00072 Response regulator receiver domain 7 115 3.2E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 Gene3D G3DSA:1.10.10.60 386 448 1.2E-16 T 14-10-2018 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 SMART SM00448 4 115 1.0E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2191 ea6912376c1d614685b524011b61cefc 448 SUPERFAMILY SSF52172 1 181 7.26E-43 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2191 ea6912376c1d614685b524011b61cefc 448 Pfam PF00158 Sigma-54 interaction domain 138 304 6.0E-67 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_0725 9addd8007721944025c160ea20aea943 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 234 1.6E-37 T 14-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Thimo_0725 9addd8007721944025c160ea20aea943 396 SUPERFAMILY SSF55347 126 269 2.98E-60 T 14-10-2018 Thimo_0725 9addd8007721944025c160ea20aea943 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 266 385 5.6E-42 T 14-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Thimo_0725 9addd8007721944025c160ea20aea943 396 Gene3D G3DSA:1.10.1740.10 307 395 1.4E-28 T 14-10-2018 Thimo_0725 9addd8007721944025c160ea20aea943 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 391 1.7E-149 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Thimo_0725 9addd8007721944025c160ea20aea943 396 SUPERFAMILY SSF51735 3 150 9.3E-45 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0725 9addd8007721944025c160ea20aea943 396 Gene3D G3DSA:3.40.50.720 3 150 8.0E-50 T 14-10-2018 Thimo_0725 9addd8007721944025c160ea20aea943 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 390 47.009 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Thimo_0725 9addd8007721944025c160ea20aea943 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 3.8E-44 T 14-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Thimo_0725 9addd8007721944025c160ea20aea943 396 PIRSF PIRSF006205 2 395 3.4E-149 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Thimo_0725 9addd8007721944025c160ea20aea943 396 SUPERFAMILY SSF69055 298 391 3.14E-29 T 14-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Thimo_2004 08f8cec7ac027ef851e42f8fce08dc44 107 SUPERFAMILY SSF82607 9 101 8.11E-34 T 14-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Thimo_2004 08f8cec7ac027ef851e42f8fce08dc44 107 PIRSF PIRSF004555 3 107 9.0E-37 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Thimo_2004 08f8cec7ac027ef851e42f8fce08dc44 107 Gene3D G3DSA:3.30.1310.10 1 107 2.4E-43 T 14-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Thimo_2004 08f8cec7ac027ef851e42f8fce08dc44 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 3 96 21.543 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Thimo_2004 08f8cec7ac027ef851e42f8fce08dc44 107 Pfam PF02575 YbaB/EbfC DNA-binding family 9 97 1.7E-33 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Thimo_2004 08f8cec7ac027ef851e42f8fce08dc44 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 103 4.1E-32 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Thimo_2972 396df56e642cffa5a72603654e790805 301 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 10 299 4.1E-96 T 14-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Thimo_2972 396df56e642cffa5a72603654e790805 301 Pfam PF04321 RmlD substrate binding domain 10 300 1.1E-100 T 14-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Thimo_2972 396df56e642cffa5a72603654e790805 301 Gene3D G3DSA:3.90.25.10 171 294 4.6E-103 T 14-10-2018 Thimo_2972 396df56e642cffa5a72603654e790805 301 Gene3D G3DSA:3.40.50.720 12 287 4.6E-103 T 14-10-2018 Thimo_2972 396df56e642cffa5a72603654e790805 301 SUPERFAMILY SSF51735 10 299 2.37E-94 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 SMART SM00487 566 768 2.0E-25 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 SMART SM00490 904 989 7.3E-23 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 Pfam PF00271 Helicase conserved C-terminal domain 875 989 7.4E-17 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 SUPERFAMILY SSF52540 532 790 1.87E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 Pfam PF12419 SNF2 Helicase protein 389 529 3.6E-42 T 14-10-2018 IPR022138 Helicase SWF/SNF-related Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 Gene3D G3DSA:3.40.50.300 799 1003 3.3E-86 T 14-10-2018 Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 Gene3D G3DSA:1.20.120.850 814 1037 3.3E-86 T 14-10-2018 Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 SUPERFAMILY SSF52540 793 1047 7.35E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 Pfam PF00176 SNF2 family N-terminal domain 589 859 1.9E-58 T 14-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Thimo_2019 7e5a3468be2c35041a04e9ee8f947104 1052 Gene3D G3DSA:3.40.50.10810 540 789 2.7E-64 T 14-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Thimo_0169 d04c067e8cc1fbf0febe8ff372c9c22d 352 Gene3D G3DSA:1.10.40.50 261 332 7.0E-19 T 14-10-2018 Thimo_0169 d04c067e8cc1fbf0febe8ff372c9c22d 352 Pfam PF03193 RsgA GTPase 88 260 2.1E-39 T 14-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 Thimo_0169 d04c067e8cc1fbf0febe8ff372c9c22d 352 Gene3D G3DSA:3.40.50.300 90 260 1.5E-37 T 14-10-2018 Thimo_0169 d04c067e8cc1fbf0febe8ff372c9c22d 352 SUPERFAMILY SSF52540 105 318 2.7E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0169 d04c067e8cc1fbf0febe8ff372c9c22d 352 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 71 316 1.1E-42 T 14-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Thimo_0169 d04c067e8cc1fbf0febe8ff372c9c22d 352 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 30 323 27.875 T 14-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Thimo_0570 1c12b4fe8447fb59b64d12baaded034b 153 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 26 143 6.9E-30 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Thimo_0570 1c12b4fe8447fb59b64d12baaded034b 153 PIRSF PIRSF003230 14 153 1.1E-45 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Thimo_0570 1c12b4fe8447fb59b64d12baaded034b 153 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 23 149 8.4E-50 T 14-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 Thimo_0570 1c12b4fe8447fb59b64d12baaded034b 153 Pfam PF03061 Thioesterase superfamily 38 123 9.5E-18 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Thimo_0570 1c12b4fe8447fb59b64d12baaded034b 153 SUPERFAMILY SSF54637 19 152 1.55E-41 T 14-10-2018 IPR029069 HotDog domain superfamily Thimo_0570 1c12b4fe8447fb59b64d12baaded034b 153 Gene3D G3DSA:3.10.129.10 15 153 2.3E-44 T 14-10-2018 Thimo_0801 b4929e31921a2c1b0e7998566bc18363 157 SUPERFAMILY SSF52200 3 110 4.71E-13 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_0801 b4929e31921a2c1b0e7998566bc18363 157 Pfam PF13676 TIR domain 4 109 1.4E-11 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_0801 b4929e31921a2c1b0e7998566bc18363 157 Gene3D G3DSA:3.40.50.10140 2 139 9.1E-13 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_0022 fff336a7f3fab61b0cf9850f0eb7daac 357 Pfam PF00665 Integrase core domain 139 254 5.9E-17 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_0022 fff336a7f3fab61b0cf9850f0eb7daac 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0022 fff336a7f3fab61b0cf9850f0eb7daac 357 SUPERFAMILY SSF53098 141 305 3.03E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0022 fff336a7f3fab61b0cf9850f0eb7daac 357 Gene3D G3DSA:3.30.420.10 137 302 2.9E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_0022 fff336a7f3fab61b0cf9850f0eb7daac 357 Pfam PF13565 Homeodomain-like domain 35 112 2.6E-11 T 14-10-2018 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 Pfam PF01926 50S ribosome-binding GTPase 218 313 1.6E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 447 32.383 T 14-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 Pfam PF12631 MnmE helical domain 122 444 1.2E-52 T 14-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:3.40.50.300 216 376 2.2E-99 T 14-10-2018 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:3.30.1360.120 1 120 1.3E-38 T 14-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 SUPERFAMILY SSF116878 120 447 2.75E-44 T 14-10-2018 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 217 333 3.5E-19 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 447 5.9E-96 T 14-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 119 3.0E-34 T 14-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 SUPERFAMILY SSF52540 71 365 2.39E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3701 c4a82f84294c076a0f225eb47b1bac45 447 Gene3D G3DSA:1.20.120.430 121 447 2.2E-99 T 14-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 Thimo_3241 83a0002ac73f883e6f1da8cd3543272a 64 SUPERFAMILY SSF54862 5 58 1.05E-11 T 14-10-2018 Thimo_3241 83a0002ac73f883e6f1da8cd3543272a 64 Gene3D G3DSA:3.30.70.20 3 64 4.1E-16 T 14-10-2018 Thimo_3241 83a0002ac73f883e6f1da8cd3543272a 64 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3241 83a0002ac73f883e6f1da8cd3543272a 64 Pfam PF00037 4Fe-4S binding domain 4 25 9.0E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_2652 ceed9c1d82dc33af4fd661b9ae8773fd 941 Gene3D G3DSA:1.20.58.2200 886 940 2.0E-19 T 14-10-2018 IPR038440 FimV, C-terminal domain superfamily Thimo_2652 ceed9c1d82dc33af4fd661b9ae8773fd 941 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 897 940 3.7E-17 T 14-10-2018 IPR020011 Motility protein FimV, C-terminal Thimo_2652 ceed9c1d82dc33af4fd661b9ae8773fd 941 SUPERFAMILY SSF48452 579 661 1.24E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2652 ceed9c1d82dc33af4fd661b9ae8773fd 941 Pfam PF14559 Tetratricopeptide repeat 589 655 4.4E-6 T 14-10-2018 Thimo_2652 ceed9c1d82dc33af4fd661b9ae8773fd 941 Gene3D G3DSA:1.25.40.10 581 660 8.2E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 SUPERFAMILY SSF55785 164 277 1.43E-26 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 Pfam PF08447 PAS fold 182 267 6.3E-16 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 Pfam PF08448 PAS fold 28 142 1.2E-8 T 14-10-2018 IPR013656 PAS fold-4 Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 Gene3D G3DSA:3.30.450.20 152 272 4.3E-28 T 14-10-2018 Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 SUPERFAMILY SSF55874 382 503 3.01E-13 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 Pfam PF07730 Histidine kinase 309 371 9.2E-5 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 SUPERFAMILY SSF55785 20 138 1.03E-12 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 SMART SM00091 22 87 0.015 T 14-10-2018 IPR000014 PAS domain Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 SMART SM00091 158 226 8.3E-8 T 14-10-2018 IPR000014 PAS domain Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 Gene3D G3DSA:3.30.450.20 20 147 7.5E-16 T 14-10-2018 Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 Gene3D G3DSA:3.30.565.10 377 505 2.5E-21 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 155 281 5.7E-20 T 14-10-2018 IPR000014 PAS domain Thimo_2595 053248dc6a8787f198f8a5f8dbd95dcb 509 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 144 1.7E-10 T 14-10-2018 IPR000014 PAS domain Thimo_0272 eef256fd31fb899b822fb2918236c841 216 SUPERFAMILY SSF160527 102 187 2.48E-5 T 14-10-2018 Thimo_0272 eef256fd31fb899b822fb2918236c841 216 Pfam PF02108 Flagellar assembly protein FliH 59 186 1.4E-31 T 14-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 7.7E-49 T 14-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 14-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 3.0E-40 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 3.0E-40 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 3.0E-40 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 3.0E-40 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 SUPERFAMILY SSF54686 1 134 9.29E-55 T 14-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 2.7E-60 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 Gene3D G3DSA:3.90.1170.10 1 137 9.6E-56 T 14-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.695 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2853 eafc4c6a93b69ca7663dd295dd1171ed 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 14-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0152 b3dcef0d0e4f2be26b89ccab8171ee25 144 Gene3D G3DSA:3.90.10.10 51 124 2.8E-5 T 14-10-2018 Thimo_0152 b3dcef0d0e4f2be26b89ccab8171ee25 144 SUPERFAMILY SSF48695 37 120 2.56E-13 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_0668 48fda9da051f2e070349fd92cdba80ba 162 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 14-10-2018 IPR020549 Endoribonuclease YbeY, conserved site Thimo_0668 48fda9da051f2e070349fd92cdba80ba 162 Pfam PF02130 Uncharacterized protein family UPF0054 24 143 6.1E-33 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Thimo_0668 48fda9da051f2e070349fd92cdba80ba 162 SUPERFAMILY SSF55486 19 150 2.34E-41 T 14-10-2018 Thimo_0668 48fda9da051f2e070349fd92cdba80ba 162 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 38 144 1.3E-32 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Thimo_0668 48fda9da051f2e070349fd92cdba80ba 162 Gene3D G3DSA:3.40.390.30 1 154 9.0E-50 T 14-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 Thimo_0668 48fda9da051f2e070349fd92cdba80ba 162 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 148 21.967 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Thimo_1713 6f4591dc9a6f0b6ed0ec0715804bfa61 291 Gene3D G3DSA:3.90.550.10 1 290 7.6E-87 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1713 6f4591dc9a6f0b6ed0ec0715804bfa61 291 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 266 1.3E-114 T 14-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 Thimo_1713 6f4591dc9a6f0b6ed0ec0715804bfa61 291 SUPERFAMILY SSF53448 3 270 4.06E-64 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1713 6f4591dc9a6f0b6ed0ec0715804bfa61 291 Pfam PF00483 Nucleotidyl transferase 11 270 2.9E-27 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Thimo_1638 d23d4b67fb9764d0fe04caf511dd9023 446 SUPERFAMILY SSF103473 13 424 1.96E-35 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_1638 d23d4b67fb9764d0fe04caf511dd9023 446 Pfam PF11700 Vacuole effluxer Atg22 like 146 434 4.9E-28 T 14-10-2018 IPR024671 Autophagy-related protein 22-like Thimo_1638 d23d4b67fb9764d0fe04caf511dd9023 446 Pfam PF11700 Vacuole effluxer Atg22 like 61 138 2.6E-7 T 14-10-2018 IPR024671 Autophagy-related protein 22-like Thimo_1638 d23d4b67fb9764d0fe04caf511dd9023 446 Gene3D G3DSA:1.20.1250.20 229 428 5.3E-16 T 14-10-2018 Thimo_1638 d23d4b67fb9764d0fe04caf511dd9023 446 Gene3D G3DSA:1.20.1250.20 13 207 8.1E-10 T 14-10-2018 Thimo_1341 4d089590cfa59b296676af81f421df35 296 PIRSF PIRSF000006 2 296 6.8E-61 T 14-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Thimo_1341 4d089590cfa59b296676af81f421df35 296 PRINTS PR00605 Class IC cytochrome C signature 118 129 4.0E-5 T 14-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Thimo_1341 4d089590cfa59b296676af81f421df35 296 PRINTS PR00605 Class IC cytochrome C signature 160 182 4.0E-5 T 14-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Thimo_1341 4d089590cfa59b296676af81f421df35 296 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 9 55 1.0E-19 T 14-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal Thimo_1341 4d089590cfa59b296676af81f421df35 296 Gene3D G3DSA:1.10.760.10 82 292 2.3E-41 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1341 4d089590cfa59b296676af81f421df35 296 Gene3D G3DSA:1.20.58.1490 2 68 4.2E-15 T 14-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily Thimo_1341 4d089590cfa59b296676af81f421df35 296 Pfam PF00034 Cytochrome c 197 292 9.2E-6 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_1341 4d089590cfa59b296676af81f421df35 296 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 11 295 3.5E-59 T 14-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Thimo_1341 4d089590cfa59b296676af81f421df35 296 SUPERFAMILY SSF46626 29 191 4.14E-26 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1341 4d089590cfa59b296676af81f421df35 296 SUPERFAMILY SSF46626 192 294 2.1E-12 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1341 4d089590cfa59b296676af81f421df35 296 Gene3D G3DSA:1.10.760.10 163 267 2.3E-41 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1341 4d089590cfa59b296676af81f421df35 296 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 111 182 1.1E-11 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_1137 1036a12bb38dc52c2744d4b8457cd766 301 Gene3D G3DSA:3.30.1490.20 115 181 1.4E-26 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_1137 1036a12bb38dc52c2744d4b8457cd766 301 SUPERFAMILY SSF56059 98 288 1.18E-48 T 14-10-2018 Thimo_1137 1036a12bb38dc52c2744d4b8457cd766 301 Gene3D G3DSA:3.40.50.20 1 114 9.9E-39 T 14-10-2018 Thimo_1137 1036a12bb38dc52c2744d4b8457cd766 301 Pfam PF08443 RimK-like ATP-grasp domain 97 286 6.7E-69 T 14-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Thimo_1137 1036a12bb38dc52c2744d4b8457cd766 301 Gene3D G3DSA:3.30.470.80 182 298 6.3E-42 T 14-10-2018 Thimo_1137 1036a12bb38dc52c2744d4b8457cd766 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 3 286 6.2E-87 T 14-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 Thimo_1137 1036a12bb38dc52c2744d4b8457cd766 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 53.688 T 14-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK Thimo_2498 609b945bf44b1f9da2b4ba1827f6c172 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 132 1.8E-19 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Thimo_2498 609b945bf44b1f9da2b4ba1827f6c172 133 Gene3D G3DSA:3.30.420.270 63 132 3.6E-7 T 14-10-2018 Thimo_1100 1a65cfad0e62b7188d40c922a7a4d05a 473 SUPERFAMILY SSF56954 4 450 1.83E-85 T 14-10-2018 Thimo_1100 1a65cfad0e62b7188d40c922a7a4d05a 473 Gene3D G3DSA:1.20.1600.10 24 469 2.0E-105 T 14-10-2018 Thimo_1100 1a65cfad0e62b7188d40c922a7a4d05a 473 Pfam PF02321 Outer membrane efflux protein 265 447 3.8E-37 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Thimo_1100 1a65cfad0e62b7188d40c922a7a4d05a 473 Pfam PF02321 Outer membrane efflux protein 27 241 9.8E-25 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Thimo_1100 1a65cfad0e62b7188d40c922a7a4d05a 473 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 24 463 1.5E-96 T 14-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 Gene3D G3DSA:1.10.40.30 367 439 3.8E-195 T 14-10-2018 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 TIGRFAM TIGR00838 argH: argininosuccinate lyase 11 462 8.5E-194 T 14-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 317 336 5.7E-70 T 14-10-2018 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 282 298 5.7E-70 T 14-10-2018 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 108 130 5.7E-70 T 14-10-2018 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 200 216 5.7E-70 T 14-10-2018 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 238 262 5.7E-70 T 14-10-2018 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00145 Argininosuccinate lyase family signature 149 169 5.7E-70 T 14-10-2018 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 Gene3D G3DSA:1.10.275.10 32 236 3.8E-195 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 SUPERFAMILY SSF48557 11 462 7.85E-155 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 Hamap MF_00006 Argininosuccinate lyase [argH]. 9 460 44.227 T 14-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00149 Fumarate lyase superfamily signature 154 172 3.2E-31 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00149 Fumarate lyase superfamily signature 109 127 3.2E-31 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00149 Fumarate lyase superfamily signature 238 265 3.2E-31 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 PRINTS PR00149 Fumarate lyase superfamily signature 282 298 3.2E-31 T 14-10-2018 IPR000362 Fumarate lyase family Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 Pfam PF00206 Lyase 13 307 9.7E-79 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 Pfam PF14698 Argininosuccinate lyase C-terminal 370 438 1.2E-24 T 14-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 ProSitePatterns PS00163 Fumarate lyases signature. 282 291 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Thimo_1071 1dc3e91a4859da09ad0b35fac757e72d 468 Gene3D G3DSA:1.20.200.10 126 455 3.8E-195 T 14-10-2018 Thimo_3297 f4bf89e4335f03cf9c32e1ee4d610a85 227 Gene3D G3DSA:3.40.50.2300 1 128 2.3E-41 T 14-10-2018 Thimo_3297 f4bf89e4335f03cf9c32e1ee4d610a85 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 224 3.4E-27 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3297 f4bf89e4335f03cf9c32e1ee4d610a85 227 SUPERFAMILY SSF52172 1 184 4.83E-44 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_3297 f4bf89e4335f03cf9c32e1ee4d610a85 227 Pfam PF00072 Response regulator receiver domain 4 116 4.5E-32 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3297 f4bf89e4335f03cf9c32e1ee4d610a85 227 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 2 225 1.4E-103 T 14-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 Thimo_3297 f4bf89e4335f03cf9c32e1ee4d610a85 227 SMART SM00862 149 224 8.6E-28 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3297 f4bf89e4335f03cf9c32e1ee4d610a85 227 SMART SM00448 2 115 2.1E-48 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3297 f4bf89e4335f03cf9c32e1ee4d610a85 227 Gene3D G3DSA:1.10.10.10 129 227 2.9E-37 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 Gene3D G3DSA:3.40.630.40 144 379 1.3E-75 T 14-10-2018 Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 SMART SM00646 215 370 6.8E-51 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 SUPERFAMILY SSF53187 153 373 8.16E-54 T 14-10-2018 Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 SMART SM00257 390 433 2.0E-8 T 14-10-2018 IPR018392 LysM domain Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 Gene3D G3DSA:2.60.40.3500 16 128 3.2E-25 T 14-10-2018 Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 Pfam PF01476 LysM domain 395 433 1.6E-10 T 14-10-2018 IPR018392 LysM domain Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 Gene3D G3DSA:3.10.350.10 381 435 5.9E-13 T 14-10-2018 IPR036779 LysM domain superfamily Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 Pfam PF11741 AMIN domain 27 125 3.7E-16 T 14-10-2018 IPR021731 AMIN domain Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 SUPERFAMILY SSF54106 389 433 4.71E-10 T 14-10-2018 Thimo_1692 e9fb0c3719e4d264e65c8e4102e15e02 435 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 155 370 4.9E-48 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Thimo_3449 5653b49a44748ed4299daaa435216736 90 Gene3D G3DSA:1.20.5.780 2 83 3.7E-13 T 14-10-2018 Thimo_3449 5653b49a44748ed4299daaa435216736 90 Pfam PF08681 Protein of unknown function (DUF1778) 6 80 6.6E-26 T 14-10-2018 IPR014795 Vibrio phage ICP1, Orf50 Thimo_3449 5653b49a44748ed4299daaa435216736 90 SUPERFAMILY SSF47598 1 79 1.45E-21 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Thimo_2980 13cf19a9993bfc063b1975e95ea7625f 416 SUPERFAMILY SSF53649 74 415 1.55E-51 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Thimo_2980 13cf19a9993bfc063b1975e95ea7625f 416 Gene3D G3DSA:3.40.720.10 66 410 3.6E-35 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Thimo_2980 13cf19a9993bfc063b1975e95ea7625f 416 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 76 301 6.8E-24 T 14-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 Thimo_0069 4bc25729647570dd1c70ef1e9c0afbcd 427 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 425 105.767 T 14-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Thimo_0069 4bc25729647570dd1c70ef1e9c0afbcd 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_0069 4bc25729647570dd1c70ef1e9c0afbcd 427 SUPERFAMILY SSF53383 2 424 1.07E-135 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_0069 4bc25729647570dd1c70ef1e9c0afbcd 427 Gene3D G3DSA:3.40.640.10 69 317 6.1E-179 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_0069 4bc25729647570dd1c70ef1e9c0afbcd 427 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 4 424 1.1E-192 T 14-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Thimo_0069 4bc25729647570dd1c70ef1e9c0afbcd 427 Gene3D G3DSA:3.90.1150.10 7 417 6.1E-179 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_0069 4bc25729647570dd1c70ef1e9c0afbcd 427 Pfam PF00202 Aminotransferase class-III 33 394 1.6E-79 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_1727 a953960b543518b97aaede13cc6bc68f 117 Pfam PF09086 Domain of unknown function (DUF1924) 23 114 5.3E-37 T 14-10-2018 IPR015170 Protein of unknown function DUF1924 Thimo_1727 a953960b543518b97aaede13cc6bc68f 117 SUPERFAMILY SSF46626 16 115 1.72E-25 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1727 a953960b543518b97aaede13cc6bc68f 117 Gene3D G3DSA:1.10.760.10 10 117 7.9E-38 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1122 ef664b8ac6964b3c8258a38e2afbe0e3 96 SUPERFAMILY SSF48295 2 60 1.57E-13 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Thimo_1122 ef664b8ac6964b3c8258a38e2afbe0e3 96 Pfam PF13518 Helix-turn-helix domain 13 51 5.3E-7 T 14-10-2018 Thimo_0911 ef664b8ac6964b3c8258a38e2afbe0e3 96 SUPERFAMILY SSF48295 2 60 1.57E-13 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Thimo_0911 ef664b8ac6964b3c8258a38e2afbe0e3 96 Pfam PF13518 Helix-turn-helix domain 13 51 5.3E-7 T 14-10-2018 Thimo_0804 ef664b8ac6964b3c8258a38e2afbe0e3 96 SUPERFAMILY SSF48295 2 60 1.57E-13 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Thimo_0804 ef664b8ac6964b3c8258a38e2afbe0e3 96 Pfam PF13518 Helix-turn-helix domain 13 51 5.3E-7 T 14-10-2018 Thimo_0478 ef664b8ac6964b3c8258a38e2afbe0e3 96 SUPERFAMILY SSF48295 2 60 1.57E-13 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Thimo_0478 ef664b8ac6964b3c8258a38e2afbe0e3 96 Pfam PF13518 Helix-turn-helix domain 13 51 5.3E-7 T 14-10-2018 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF55785 381 493 2.26E-32 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 657 763 5.6E-16 T 14-10-2018 IPR000014 PAS domain Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 367 493 2.0E-32 T 14-10-2018 IPR000014 PAS domain Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF01627 Hpt domain 1338 1417 2.9E-10 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF08448 PAS fold 504 621 2.9E-8 T 14-10-2018 IPR013656 PAS fold-4 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 778 842 7.5E-17 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00091 642 709 0.031 T 14-10-2018 IPR000014 PAS domain Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00091 498 570 170.0 T 14-10-2018 IPR000014 PAS domain Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00091 370 436 7.8E-14 T 14-10-2018 IPR000014 PAS domain Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF55785 657 764 8.22E-20 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF55874 831 1010 1.57E-45 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00388 777 842 1.7E-21 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF47384 763 843 1.71E-20 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.40.50.2300 1171 1295 1.4E-37 T 14-10-2018 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF13426 PAS domain 656 756 1.3E-8 T 14-10-2018 IPR000014 PAS domain Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.30.450.20 493 632 2.7E-12 T 14-10-2018 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.30.450.20 633 753 8.1E-20 T 14-10-2018 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:1.10.287.130 754 840 5.5E-26 T 14-10-2018 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF52172 1178 1300 1.57E-36 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00448 1177 1291 1.0E-33 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00086 446 486 1.5 T 14-10-2018 IPR001610 PAC motif Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00086 715 757 0.061 T 14-10-2018 IPR001610 PAC motif Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00086 579 620 29.0 T 14-10-2018 IPR001610 PAC motif Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.30.450.20 366 489 3.7E-38 T 14-10-2018 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF55785 483 618 8.55E-12 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:3.30.565.10 841 1013 8.8E-47 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 888 1010 2.6E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 937 951 5.0E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 955 965 5.0E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 972 990 5.0E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 996 1009 5.0E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SUPERFAMILY SSF47226 1310 1426 3.01E-18 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF00989 PAS fold 371 483 2.9E-17 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Gene3D G3DSA:1.20.120.160 1308 1426 1.4E-16 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 SMART SM00387 888 1012 4.6E-37 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0624 0473303b6322389f0993aa7cb7aecaf8 1438 Pfam PF00072 Response regulator receiver domain 1179 1291 6.3E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2553 279bae1e183f0c4697f22ddf92665aba 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 5 187 38.812 T 14-10-2018 IPR003774 Protein of unknown function UPF0301 Thimo_2553 279bae1e183f0c4697f22ddf92665aba 187 Pfam PF02622 Uncharacterized ACR, COG1678 16 174 1.3E-49 T 14-10-2018 IPR003774 Protein of unknown function UPF0301 Thimo_2553 279bae1e183f0c4697f22ddf92665aba 187 Gene3D G3DSA:3.40.1740.10 3 187 8.2E-70 T 14-10-2018 Thimo_2553 279bae1e183f0c4697f22ddf92665aba 187 SUPERFAMILY SSF143456 6 187 1.24E-65 T 14-10-2018 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 SUPERFAMILY SSF48208 2414 2934 1.5E-96 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:1.50.10.140 1026 1164 5.6E-11 T 14-10-2018 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF06165 Glycosyltransferase family 36 1651 1901 8.1E-84 T 14-10-2018 IPR010383 Glycosyl hydrolase 94 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF06165 Glycosyltransferase family 36 2157 2396 1.4E-80 T 14-10-2018 IPR010383 Glycosyl hydrolase 94 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF10091 Putative glucoamylase 1388 1584 1.6E-11 T 14-10-2018 IPR019282 Domain of unknown function DUF2329 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 SUPERFAMILY SSF74650 1639 1903 8.79E-87 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 SUPERFAMILY SSF74650 2134 2397 1.16E-87 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:1.50.10.10 2443 2855 4.7E-196 T 14-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 2865 2915 7.6E-5 T 14-10-2018 IPR005194 Glycoside hydrolase family 65, C-terminal Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:2.70.98.40 1638 1934 1.7E-95 T 14-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:2.70.98.40 2136 2434 3.2E-99 T 14-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:1.50.10.140 1452 1615 3.6E-6 T 14-10-2018 Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 SMART SM01068 1629 1690 7.4E-25 T 14-10-2018 IPR009342 Putative carbohydrate binding domain Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 SMART SM01068 2134 2199 8.1E-31 T 14-10-2018 IPR009342 Putative carbohydrate binding domain Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2429 2855 2.1E-121 T 14-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain Thimo_2488 f0be6139321dafd62c9d35ee63c5ff50 2948 Gene3D G3DSA:2.60.420.10 2438 2921 4.7E-196 T 14-10-2018 Thimo_1248 807d392ec6f8cb347ee40250cf4276c6 398 SMART SM00257 39 87 8.4E-7 T 14-10-2018 IPR018392 LysM domain Thimo_1248 807d392ec6f8cb347ee40250cf4276c6 398 SUPERFAMILY SSF54106 38 87 1.22E-8 T 14-10-2018 Thimo_1248 807d392ec6f8cb347ee40250cf4276c6 398 Gene3D G3DSA:3.10.350.10 38 85 1.1E-14 T 14-10-2018 IPR036779 LysM domain superfamily Thimo_1248 807d392ec6f8cb347ee40250cf4276c6 398 Pfam PF01476 LysM domain 40 86 2.1E-14 T 14-10-2018 IPR018392 LysM domain Thimo_1814 600c399dd983aad902e1ed83ea85e298 362 Pfam PF01758 Sodium Bile acid symporter family 63 256 3.8E-34 T 14-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 Thimo_1814 600c399dd983aad902e1ed83ea85e298 362 PIRSF PIRSF005508 4 355 7.7E-116 T 14-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 Thimo_1814 600c399dd983aad902e1ed83ea85e298 362 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 17 344 4.3E-116 T 14-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 Thimo_1814 600c399dd983aad902e1ed83ea85e298 362 Gene3D G3DSA:1.20.1530.20 10 346 1.8E-18 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily Thimo_1467 300f26124c2fe66272ddb9e13f7c4a2e 287 SUPERFAMILY SSF53790 6 226 3.27E-77 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Thimo_1467 300f26124c2fe66272ddb9e13f7c4a2e 287 Gene3D G3DSA:3.40.1010.10 1 114 2.2E-43 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Thimo_1467 300f26124c2fe66272ddb9e13f7c4a2e 287 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 8 278 4.2E-78 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Thimo_1467 300f26124c2fe66272ddb9e13f7c4a2e 287 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 7 228 36.002 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Thimo_1467 300f26124c2fe66272ddb9e13f7c4a2e 287 PIRSF PIRSF005917 1 281 4.7E-96 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Thimo_1467 300f26124c2fe66272ddb9e13f7c4a2e 287 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 208 3.0E-26 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Thimo_1467 300f26124c2fe66272ddb9e13f7c4a2e 287 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 85 96 - T 14-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 Thimo_1467 300f26124c2fe66272ddb9e13f7c4a2e 287 Gene3D G3DSA:3.30.950.10 115 234 5.1E-35 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Thimo_2757 d1d9761f33588703dabd1425037c5925 171 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 12 164 5.7E-48 T 14-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Thimo_2757 d1d9761f33588703dabd1425037c5925 171 Gene3D G3DSA:3.40.50.1000 1 171 1.3E-49 T 14-10-2018 IPR023214 HAD superfamily Thimo_2757 d1d9761f33588703dabd1425037c5925 171 PIRSF PIRSF006118 1 171 1.1E-65 T 14-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Thimo_2757 d1d9761f33588703dabd1425037c5925 171 SUPERFAMILY SSF56784 9 166 1.24E-40 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0602 0edcbab2129acb313c7daf8a16b4d2d1 366 Pfam PF03969 AFG1-like ATPase 14 357 6.5E-124 T 14-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 Thimo_0602 0edcbab2129acb313c7daf8a16b4d2d1 366 SUPERFAMILY SSF52540 57 191 1.07E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0602 0edcbab2129acb313c7daf8a16b4d2d1 366 Gene3D G3DSA:3.40.50.300 48 202 5.0E-18 T 14-10-2018 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 SUPERFAMILY SSF81296 317 431 1.96E-32 T 14-10-2018 IPR014756 Immunoglobulin E-set Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 Gene3D G3DSA:2.60.40.650 316 432 3.1E-33 T 14-10-2018 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 354 366 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 80 94 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 100 116 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 314 326 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 412 425 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 399 411 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 178 193 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 250 263 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 PRINTS PR00407 Eukaryotic molybdopterin domain signature 266 279 1.1E-24 T 14-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 SUPERFAMILY SSF56524 74 304 9.94E-63 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 Pfam PF00174 Oxidoreductase molybdopterin binding domain 115 285 1.0E-47 T 14-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 313 430 2.3E-19 T 14-10-2018 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 Reactome: R-HSA-1614517 Thimo_2977 817fca173cb2fce8ff1c27a4990134b6 432 Gene3D G3DSA:3.90.420.10 64 311 3.4E-72 T 14-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Thimo_1220 13a0a31dd45067564e742f277db59727 160 TIGRFAM TIGR02060 aprB: adenylylsulfate reductase, beta subunit 1 133 6.4E-64 T 14-10-2018 IPR011802 Adenylylsulphate reductase, beta subunit Thimo_1220 13a0a31dd45067564e742f277db59727 160 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 42 53 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1220 13a0a31dd45067564e742f277db59727 160 Gene3D G3DSA:3.30.720.40 63 146 1.1E-13 T 14-10-2018 IPR038465 APS reductase, beta subunit, C-terminal domain superfamily Thimo_1220 13a0a31dd45067564e742f277db59727 160 Gene3D G3DSA:3.30.70.20 2 62 1.4E-22 T 14-10-2018 Thimo_1220 13a0a31dd45067564e742f277db59727 160 SUPERFAMILY SSF54862 4 87 4.19E-21 T 14-10-2018 Thimo_1220 13a0a31dd45067564e742f277db59727 160 Pfam PF13187 4Fe-4S dicluster domain 9 57 3.0E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1220 13a0a31dd45067564e742f277db59727 160 Pfam PF12139 Adenosine-5'-phosphosulfate reductase beta subunit 59 143 2.5E-34 T 14-10-2018 IPR022738 Adenylylsulphate reductase, beta subunit, C-terminal Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 Gene3D G3DSA:3.40.50.12160 37 153 6.7E-24 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 38 465 9.1E-97 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 36 467 59.216 T 14-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 37 464 3.8E-160 T 14-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 SMART SM00729 167 392 8.2E-49 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 Gene3D G3DSA:2.40.50.140 407 470 3.1E-17 T 14-10-2018 Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 Pfam PF04055 Radical SAM superfamily 173 350 1.0E-26 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 Gene3D G3DSA:3.80.30.20 165 406 2.2E-68 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 SUPERFAMILY SSF102114 155 397 4.58E-48 T 14-10-2018 Thimo_2461 52834fbeb1905dd16f3e912fb2841a3f 470 Pfam PF00919 Uncharacterized protein family UPF0004 38 115 9.4E-18 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Thimo_0339 470a05abb30adcf07725443c0de1613e 792 SUPERFAMILY SSF47781 568 640 8.45E-19 T 14-10-2018 IPR010994 RuvA domain 2-like Thimo_0339 470a05abb30adcf07725443c0de1613e 792 SUPERFAMILY SSF53098 329 477 1.44E-46 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0339 470a05abb30adcf07725443c0de1613e 792 SMART SM00316 657 728 4.8E-26 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Gene3D G3DSA:1.10.150.310 507 638 3.1E-46 T 14-10-2018 Thimo_0339 470a05abb30adcf07725443c0de1613e 792 SUPERFAMILY SSF158832 11 328 2.48E-116 T 14-10-2018 Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Pfam PF00575 S1 RNA binding domain 657 728 5.4E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_0339 470a05abb30adcf07725443c0de1613e 792 SUPERFAMILY SSF47781 478 566 4.0E-24 T 14-10-2018 IPR010994 RuvA domain 2-like Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Pfam PF09371 Tex-like protein N-terminal domain 19 202 9.6E-68 T 14-10-2018 IPR018974 Tex-like protein, N-terminal Thimo_0339 470a05abb30adcf07725443c0de1613e 792 SMART SM00732 333 432 1.3E-28 T 14-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Pfam PF16921 Tex protein YqgF-like domain 335 459 1.1E-48 T 14-10-2018 IPR032639 Tex protein, YqgF-like domain Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Gene3D G3DSA:2.40.50.140 639 732 1.0E-28 T 14-10-2018 Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Pfam PF12836 Helix-hairpin-helix motif 499 563 6.7E-23 T 14-10-2018 Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Gene3D G3DSA:1.10.10.650 12 119 5.0E-41 T 14-10-2018 IPR023319 Tex-like protein, HTH domain superfamily Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Gene3D G3DSA:1.10.3500.10 122 506 3.6E-145 T 14-10-2018 IPR023323 Tex-like domain superfamily Thimo_0339 470a05abb30adcf07725443c0de1613e 792 SUPERFAMILY SSF50249 646 734 5.29E-26 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_0339 470a05abb30adcf07725443c0de1613e 792 Gene3D G3DSA:3.30.420.140 332 459 3.6E-145 T 14-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 SUPERFAMILY SSF48019 250 432 2.32E-73 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 Pfam PF16193 AAA C-terminal domain 191 265 2.5E-21 T 14-10-2018 IPR032423 AAA C-terminal domain Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 Pfam PF12002 MgsA AAA+ ATPase C terminal 266 432 5.3E-66 T 14-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 SMART SM00382 51 168 1.4E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 SUPERFAMILY SSF52540 16 240 1.64E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 Gene3D G3DSA:3.40.50.300 12 167 1.5E-45 T 14-10-2018 Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 Gene3D G3DSA:1.10.3710.10 344 444 1.9E-34 T 14-10-2018 Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 Gene3D G3DSA:1.20.272.10 241 343 2.0E-42 T 14-10-2018 Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 55 162 5.7E-16 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_2444 e405513ad0fc015d0096b2f0bfbd8f8a 454 Gene3D G3DSA:1.10.8.60 168 240 9.1E-16 T 14-10-2018 Thimo_1265 577c4d26caf48305b807d843e128d74a 481 PIRSF PIRSF006247 1 481 1.0E-167 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Thimo_1265 577c4d26caf48305b807d843e128d74a 481 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 464 2.9E-104 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Thimo_1265 577c4d26caf48305b807d843e128d74a 481 Pfam PF02386 Cation transport protein 37 475 8.7E-77 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Thimo_3008 38ac2f96e4e24dfd4ea9cc18ab54d700 289 Gene3D G3DSA:1.10.600.10 1 274 3.9E-67 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_3008 38ac2f96e4e24dfd4ea9cc18ab54d700 289 SUPERFAMILY SSF48576 19 273 3.68E-65 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_3008 38ac2f96e4e24dfd4ea9cc18ab54d700 289 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 200 212 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site Thimo_3008 38ac2f96e4e24dfd4ea9cc18ab54d700 289 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 77 93 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site Thimo_3008 38ac2f96e4e24dfd4ea9cc18ab54d700 289 Pfam PF00348 Polyprenyl synthetase 26 235 1.8E-44 T 14-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Thimo_1848 ff3fde6cdf635e3acb19708aaa9650e7 133 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 111 31.49 T 14-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Thimo_1848 ff3fde6cdf635e3acb19708aaa9650e7 133 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 107 2.9E-34 T 14-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Thimo_1848 ff3fde6cdf635e3acb19708aaa9650e7 133 Gene3D G3DSA:3.10.20.400 4 98 7.9E-37 T 14-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Thimo_1848 ff3fde6cdf635e3acb19708aaa9650e7 133 SUPERFAMILY SSF141734 7 117 2.62E-47 T 14-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Thimo_1848 ff3fde6cdf635e3acb19708aaa9650e7 133 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 107 2.0E-19 T 14-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Thimo_3454 4e948822a02602cdcee57b798c9bfebc 93 Gene3D G3DSA:3.30.2310.20 1 93 9.0E-24 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_3454 4e948822a02602cdcee57b798c9bfebc 93 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 3 93 5.3E-20 T 14-10-2018 IPR007711 Toxin HigB-1 Thimo_3454 4e948822a02602cdcee57b798c9bfebc 93 SUPERFAMILY SSF143011 13 93 7.32E-16 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Pfam PF00571 CBS domain 238 285 9.1E-4 T 14-10-2018 IPR000644 CBS domain Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Pfam PF00571 CBS domain 166 222 3.6E-6 T 14-10-2018 IPR000644 CBS domain Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SUPERFAMILY SSF161093 308 479 3.14E-48 T 14-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 TIGRFAM TIGR00400 mgtE: magnesium transporter 45 479 3.0E-80 T 14-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Pfam PF01769 Divalent cation transporter 351 472 5.3E-26 T 14-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SMART SM00924 63 166 7.0E-32 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SMART SM00116 173 226 0.047 T 14-10-2018 IPR000644 CBS domain Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SMART SM00116 238 286 0.84 T 14-10-2018 IPR000644 CBS domain Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Pfam PF03448 MgtE intracellular N domain 63 164 4.1E-23 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Gene3D G3DSA:1.25.60.10 35 161 8.5E-16 T 14-10-2018 IPR038076 MgtE, N-terminal domain superfamily Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SUPERFAMILY SSF158791 44 163 7.85E-25 T 14-10-2018 Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Gene3D G3DSA:1.10.357.20 305 479 3.0E-47 T 14-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 SUPERFAMILY SSF54631 165 305 1.04E-25 T 14-10-2018 Thimo_2133 63cf5a7e7d34f66c2bb468fcb269c3c5 480 Gene3D G3DSA:3.10.580.10 162 290 6.4E-37 T 14-10-2018 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SMART SM00304 79 133 3.9E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 244 351 7.0E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Gene3D G3DSA:1.10.287.130 77 193 8.2E-20 T 14-10-2018 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 297 307 9.8E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 338 351 9.8E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 9.8E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 314 332 9.8E-14 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Gene3D G3DSA:3.30.565.10 197 357 1.9E-34 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SMART SM00388 134 198 2.9E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SMART SM00387 243 354 3.1E-32 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SUPERFAMILY SSF158472 79 131 8.63E-6 T 14-10-2018 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Pfam PF00672 HAMP domain 79 129 3.4E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 Pfam PF00512 His Kinase A (phospho-acceptor) domain 139 198 6.2E-9 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SUPERFAMILY SSF47384 117 199 2.35E-13 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_3141 8a1a9d2d6d1e26fa91aa5acf4a63d778 364 SUPERFAMILY SSF55874 187 352 6.55E-38 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0299 67870792dcdf4f4e6809608723a8c8db 371 Gene3D G3DSA:2.40.370.10 50 235 1.1E-68 T 14-10-2018 IPR023374 AttH-like domain superfamily Thimo_0299 67870792dcdf4f4e6809608723a8c8db 371 Pfam PF17186 Lipocalin-like domain 236 364 3.1E-40 T 14-10-2018 Thimo_0299 67870792dcdf4f4e6809608723a8c8db 371 Pfam PF07143 CrtC N-terminal lipocalin domain 62 232 2.0E-53 T 14-10-2018 IPR010791 AttH domain Thimo_0299 67870792dcdf4f4e6809608723a8c8db 371 Gene3D G3DSA:2.40.370.10 236 368 1.0E-46 T 14-10-2018 IPR023374 AttH-like domain superfamily Thimo_0299 67870792dcdf4f4e6809608723a8c8db 371 SUPERFAMILY SSF159245 39 364 2.88E-108 T 14-10-2018 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 SMART SM00861 679 843 1.0E-46 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 SUPERFAMILY SSF52518 380 640 2.31E-70 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 365 1.0E-71 T 14-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Gene3D G3DSA:3.20.20.70 1 367 3.7E-141 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 SUPERFAMILY SSF52518 673 845 4.72E-51 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Gene3D G3DSA:3.40.50.920 854 982 1.3E-32 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Pfam PF02779 Transketolase, pyrimidine binding domain 678 841 9.1E-36 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Hamap MF_00493 Transaldolase [tal]. 1 376 124.191 T 14-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 ProSitePatterns PS00802 Transketolase signature 2. 786 802 - T 14-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Gene3D G3DSA:3.40.50.970 371 648 3.1E-91 T 14-10-2018 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 TIGRFAM TIGR00876 tal_mycobact: transaldolase 11 364 2.6E-92 T 14-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 SUPERFAMILY SSF51569 6 369 1.05E-67 T 14-10-2018 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Pfam PF02780 Transketolase, C-terminal domain 858 973 1.3E-23 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 ProSitePatterns PS01054 Transaldolase signature 1. 40 48 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Gene3D G3DSA:3.40.50.970 665 852 8.0E-63 T 14-10-2018 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 SUPERFAMILY SSF52922 859 979 1.31E-22 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_1547 cb652ea0ae76d5d3fd9271505285b829 982 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 388 633 2.2E-38 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_0455 be330c4a471033d07e88941e25e73c2f 600 Pfam PF02272 DHHA1 domain 332 463 1.4E-21 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Thimo_0455 be330c4a471033d07e88941e25e73c2f 600 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 34 580 4.3E-134 T 14-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 Thimo_0455 be330c4a471033d07e88941e25e73c2f 600 SUPERFAMILY SSF64182 59 471 2.62E-109 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily Thimo_0455 be330c4a471033d07e88941e25e73c2f 600 Gene3D G3DSA:3.10.310.30 338 466 6.2E-27 T 14-10-2018 Thimo_0455 be330c4a471033d07e88941e25e73c2f 600 Gene3D G3DSA:3.90.1640.30 59 336 1.5E-83 T 14-10-2018 Thimo_0455 be330c4a471033d07e88941e25e73c2f 600 Pfam PF01368 DHH family 83 219 4.8E-8 T 14-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Thimo_2454 027d9d40ccca0bb8cec38615e130eedc 185 SMART SM00769 43 160 1.0E-8 T 14-10-2018 IPR013990 Water stress and hypersensitive response domain GO:0009269 Thimo_2454 027d9d40ccca0bb8cec38615e130eedc 185 ProDom PD010978 LATE EMBRYOGENESIS ABUNDANT DESICCATION SIMILAR PROTECTANT PROTEINS RELATED EMBRYOGENESIS-ABUNDANT EMBRYOGENESIS-LIKE 41 152 8.0E-5 T 14-10-2018 Thimo_2454 027d9d40ccca0bb8cec38615e130eedc 185 SUPERFAMILY SSF117070 24 163 2.09E-20 T 14-10-2018 Thimo_2454 027d9d40ccca0bb8cec38615e130eedc 185 Pfam PF03168 Late embryogenesis abundant protein 63 152 4.9E-10 T 14-10-2018 IPR004864 Late embryogenesis abundant protein, LEA_2 subgroup Thimo_2454 027d9d40ccca0bb8cec38615e130eedc 185 Gene3D G3DSA:2.60.40.1820 39 167 2.6E-13 T 14-10-2018 Thimo_2649 d46419b508710f490f8fc6bf892dff97 402 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 14 396 1.7E-191 T 14-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2649 d46419b508710f490f8fc6bf892dff97 402 Gene3D G3DSA:3.40.50.1100 17 213 2.4E-188 T 14-10-2018 Thimo_2649 d46419b508710f490f8fc6bf892dff97 402 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 9 398 53.218 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2649 d46419b508710f490f8fc6bf892dff97 402 SUPERFAMILY SSF53686 10 395 2.23E-152 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_2649 d46419b508710f490f8fc6bf892dff97 402 Gene3D G3DSA:3.40.50.1100 61 391 2.4E-188 T 14-10-2018 Thimo_2649 d46419b508710f490f8fc6bf892dff97 402 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 60 385 3.3E-47 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_2649 d46419b508710f490f8fc6bf892dff97 402 PIRSF PIRSF001413 2 402 9.4E-166 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2649 d46419b508710f490f8fc6bf892dff97 402 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 88 102 - T 14-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_1332 b0103abb2fd8693bf04f24017f1a56eb 293 Gene3D G3DSA:2.70.70.10 158 290 3.0E-30 T 14-10-2018 IPR011055 Duplicated hybrid motif Thimo_1332 b0103abb2fd8693bf04f24017f1a56eb 293 Gene3D G3DSA:3.10.350.10 51 110 4.7E-8 T 14-10-2018 IPR036779 LysM domain superfamily Thimo_1332 b0103abb2fd8693bf04f24017f1a56eb 293 Pfam PF01476 LysM domain 58 99 1.3E-6 T 14-10-2018 IPR018392 LysM domain Thimo_1332 b0103abb2fd8693bf04f24017f1a56eb 293 SUPERFAMILY SSF51261 62 289 7.85E-38 T 14-10-2018 IPR011055 Duplicated hybrid motif Thimo_1332 b0103abb2fd8693bf04f24017f1a56eb 293 Pfam PF01551 Peptidase family M23 192 285 5.6E-25 T 14-10-2018 IPR016047 Peptidase M23 Thimo_0862 ee64e0d9774492bc78c74c9946fafcf6 322 Pfam PF04055 Radical SAM superfamily 28 163 1.8E-9 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0862 ee64e0d9774492bc78c74c9946fafcf6 322 Pfam PF13353 4Fe-4S single cluster domain 30 113 2.3E-7 T 14-10-2018 Thimo_0862 ee64e0d9774492bc78c74c9946fafcf6 322 SUPERFAMILY SSF102114 21 317 8.5E-34 T 14-10-2018 Thimo_0862 ee64e0d9774492bc78c74c9946fafcf6 322 Pfam PF12345 Protein of unknown function (DUF3641) 182 319 1.2E-54 T 14-10-2018 IPR024521 Domain of unknown function DUF3641 Thimo_0862 ee64e0d9774492bc78c74c9946fafcf6 322 Gene3D G3DSA:3.20.20.70 17 282 1.8E-18 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0862 ee64e0d9774492bc78c74c9946fafcf6 322 TIGRFAM TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein 16 320 6.7E-136 T 14-10-2018 IPR026351 Radical SAM/Cys-rich domain protein Thimo_1742 9cea3440eac74f502adf5041a4df20b7 334 Gene3D G3DSA:3.90.180.10 10 325 3.7E-96 T 14-10-2018 Thimo_1742 9cea3440eac74f502adf5041a4df20b7 334 Gene3D G3DSA:3.40.50.720 129 275 3.7E-96 T 14-10-2018 Thimo_1742 9cea3440eac74f502adf5041a4df20b7 334 SUPERFAMILY SSF51735 118 296 2.02E-42 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1742 9cea3440eac74f502adf5041a4df20b7 334 SMART SM00829 10 329 1.4E-39 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Thimo_1742 9cea3440eac74f502adf5041a4df20b7 334 Pfam PF13602 Zinc-binding dehydrogenase 189 329 4.1E-30 T 14-10-2018 Thimo_1742 9cea3440eac74f502adf5041a4df20b7 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 9.5E-9 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Thimo_1742 9cea3440eac74f502adf5041a4df20b7 334 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 146 167 - T 14-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Thimo_1742 9cea3440eac74f502adf5041a4df20b7 334 SUPERFAMILY SSF50129 1 150 2.43E-36 T 14-10-2018 IPR011032 GroES-like superfamily Thimo_1346 369fadd874cfb4afa4b22b20e96ef153 332 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 34 76 1.2E-8 T 14-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Thimo_1346 369fadd874cfb4afa4b22b20e96ef153 332 TIGRFAM TIGR00510 lipA: lipoyl synthase 35 320 2.4E-123 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Thimo_1346 369fadd874cfb4afa4b22b20e96ef153 332 Gene3D G3DSA:3.20.20.70 80 298 3.9E-18 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1346 369fadd874cfb4afa4b22b20e96ef153 332 PIRSF PIRSF005963 5 330 6.9E-125 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Thimo_1346 369fadd874cfb4afa4b22b20e96ef153 332 Hamap MF_00206 Lipoyl synthase [lipA]. 1 327 146.422 T 14-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Thimo_1346 369fadd874cfb4afa4b22b20e96ef153 332 SMART SM00729 87 297 4.6E-9 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_1346 369fadd874cfb4afa4b22b20e96ef153 332 SUPERFAMILY SSF102114 54 319 2.75E-63 T 14-10-2018 Thimo_1346 369fadd874cfb4afa4b22b20e96ef153 332 Pfam PF04055 Radical SAM superfamily 94 254 3.5E-13 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 227 308 1.1E-32 T 14-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 Gene3D G3DSA:3.40.50.700 46 226 3.3E-68 T 14-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PIRSF PIRSF000310 5 357 4.0E-142 T 14-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 44 3.8E-6 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 Gene3D G3DSA:4.10.480.10 229 339 1.4E-45 T 14-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 47 69 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 256 282 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 116 139 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 214 231 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 70 94 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 232 250 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 284 297 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 159 183 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 188 211 4.5E-121 T 14-10-2018 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 5 356 4.5E-162 T 14-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 62 207 2.7E-29 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3235 bb07f8b6fbc556a182814ab8e6605527 366 SUPERFAMILY SSF56770 50 310 2.02E-87 T 14-10-2018 Thimo_0057 d0871c9bc014d03a136bbafca0cd2a61 249 Gene3D G3DSA:3.40.50.150 29 249 1.8E-73 T 14-10-2018 Thimo_0057 d0871c9bc014d03a136bbafca0cd2a61 249 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 34 49 - T 14-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 Thimo_0057 d0871c9bc014d03a136bbafca0cd2a61 249 SUPERFAMILY SSF53335 12 247 2.05E-51 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0057 d0871c9bc014d03a136bbafca0cd2a61 249 Pfam PF01209 ubiE/COQ5 methyltransferase family 19 248 3.0E-92 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Thimo_0057 d0871c9bc014d03a136bbafca0cd2a61 249 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 14 248 38.641 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Thimo_0057 d0871c9bc014d03a136bbafca0cd2a61 249 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 23 248 7.8E-82 T 14-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Thimo_0057 d0871c9bc014d03a136bbafca0cd2a61 249 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 156 170 - T 14-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 Thimo_3189 59ded05a0317f0e471545f885d770398 663 Gene3D G3DSA:2.40.170.20 165 663 2.4E-68 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Thimo_3189 59ded05a0317f0e471545f885d770398 663 Gene3D G3DSA:2.170.130.10 53 164 1.8E-23 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Thimo_3189 59ded05a0317f0e471545f885d770398 663 Pfam PF00593 TonB dependent receptor 247 662 1.9E-41 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Thimo_3189 59ded05a0317f0e471545f885d770398 663 SUPERFAMILY SSF56935 36 663 4.28E-98 T 14-10-2018 Thimo_3189 59ded05a0317f0e471545f885d770398 663 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 154 8.5E-18 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain Thimo_1356 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 104 124 2.1E-29 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1356 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 160 186 2.1E-29 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1356 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 49 66 2.1E-29 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1356 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 66 86 2.1E-29 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1356 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 208 232 2.1E-29 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1356 238c28db9b0ae89b59aefbdecb8b7b53 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 125 145 2.1E-29 T 14-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1356 238c28db9b0ae89b59aefbdecb8b7b53 252 Pfam PF01578 Cytochrome C assembly protein 29 182 7.4E-22 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 797 938 3.0E-49 T 14-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 Gene3D G3DSA:3.40.50.12470 562 808 1.5E-163 T 14-10-2018 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 937 0.0 T 14-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 Gene3D G3DSA:3.40.50.11610 729 935 1.5E-163 T 14-10-2018 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 6.6E-14 T 14-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 SUPERFAMILY SSF52518 123 526 1.03E-84 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 Pfam PF02779 Transketolase, pyrimidine binding domain 599 792 7.5E-61 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 Gene3D G3DSA:1.10.287.1150 87 167 2.2E-23 T 14-10-2018 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 Pfam PF00676 Dehydrogenase E1 component 217 521 1.0E-52 T 14-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 Gene3D G3DSA:3.40.50.970 168 528 4.5E-141 T 14-10-2018 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 SUPERFAMILY SSF52518 581 799 1.28E-47 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 PIRSF PIRSF000157 2 940 0.0 T 14-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Thimo_0680 d6c1bbaac82b83d8b08090244a83c949 950 SMART SM00861 599 792 9.7E-55 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_3380 2a4be43596dc136324068020be181418 62 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 28.083 T 14-10-2018 IPR038053 Uncharacterised protein family UPF0434 Thimo_3380 2a4be43596dc136324068020be181418 62 Pfam PF03966 Trm112p-like protein 2 41 4.3E-13 T 14-10-2018 IPR005651 Trm112-like Thimo_3380 2a4be43596dc136324068020be181418 62 SUPERFAMILY SSF158997 1 54 1.83E-21 T 14-10-2018 Thimo_3380 2a4be43596dc136324068020be181418 62 Gene3D G3DSA:2.20.25.10 8 61 2.2E-25 T 14-10-2018 Thimo_1376 0fcb653362712f0adfffc45c806ea273 449 Pfam PF13447 Seven times multi-haem cytochrome CxxCH 212 385 4.5E-30 T 14-10-2018 Thimo_1376 0fcb653362712f0adfffc45c806ea273 449 Pfam PF13435 Cytochrome c554 and c-prime 121 187 0.0021 T 14-10-2018 IPR023155 Cytochrome c-552/4 Thimo_1376 0fcb653362712f0adfffc45c806ea273 449 Gene3D G3DSA:1.20.850.10 244 444 5.7E-42 T 14-10-2018 Thimo_1376 0fcb653362712f0adfffc45c806ea273 449 Gene3D G3DSA:1.10.780.10 48 84 4.8E-6 T 14-10-2018 Thimo_1376 0fcb653362712f0adfffc45c806ea273 449 SUPERFAMILY SSF48695 57 433 6.18E-57 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_0511 89f8d1b5bbdf51acb99831eeeb21f280 361 SUPERFAMILY SSF56112 4 342 4.69E-46 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_0511 89f8d1b5bbdf51acb99831eeeb21f280 361 Gene3D G3DSA:3.90.1200.10 117 333 3.0E-15 T 14-10-2018 Thimo_0511 89f8d1b5bbdf51acb99831eeeb21f280 361 Pfam PF01636 Phosphotransferase enzyme family 26 280 7.2E-30 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase Thimo_0817 49127a8b5cd08e7d88f98b2b6c4c2a74 343 Pfam PF11288 Protein of unknown function (DUF3089) 79 266 6.5E-66 T 14-10-2018 IPR021440 Protein of unknown function DUF3089 Thimo_0817 49127a8b5cd08e7d88f98b2b6c4c2a74 343 SUPERFAMILY SSF53474 80 236 7.71E-11 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0817 49127a8b5cd08e7d88f98b2b6c4c2a74 343 Gene3D G3DSA:3.40.50.1820 107 249 3.6E-6 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2397 52bb13824341270aa84123c8d08941e1 782 SUPERFAMILY SSF52540 226 426 1.36E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2397 52bb13824341270aa84123c8d08941e1 782 SMART SM00487 243 443 8.0E-14 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2397 52bb13824341270aa84123c8d08941e1 782 Gene3D G3DSA:1.10.8.630 46 156 7.9E-33 T 14-10-2018 Thimo_2397 52bb13824341270aa84123c8d08941e1 782 SMART SM00490 540 637 1.5E-8 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2397 52bb13824341270aa84123c8d08941e1 782 Pfam PF00271 Helicase conserved C-terminal domain 544 636 2.4E-4 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_2397 52bb13824341270aa84123c8d08941e1 782 SUPERFAMILY SSF52540 455 657 3.88E-19 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2397 52bb13824341270aa84123c8d08941e1 782 Pfam PF00270 DEAD/DEAH box helicase 268 412 1.1E-8 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_2397 52bb13824341270aa84123c8d08941e1 782 Hamap MF_00983 Probable primosomal protein N' [priA]. 50 781 24.563 T 14-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Thimo_2397 52bb13824341270aa84123c8d08941e1 782 TIGRFAM TIGR00595 priA: primosomal protein N' 269 778 2.2E-179 T 14-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Thimo_2397 52bb13824341270aa84123c8d08941e1 782 Gene3D G3DSA:3.40.50.300 241 427 7.0E-71 T 14-10-2018 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 SUPERFAMILY SSF46689 24 98 6.81E-21 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 79 99 5.9E-12 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 62 79 5.9E-12 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01591 DNA-binding protein FIS signature 43 58 1.6E-9 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01591 DNA-binding protein FIS signature 58 70 1.6E-9 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PRINTS PR01591 DNA-binding protein FIS signature 27 43 1.6E-9 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 PIRSF PIRSF002097 2 99 3.1E-31 T 14-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 Gene3D G3DSA:1.10.10.60 6 98 9.9E-28 T 14-10-2018 Thimo_0186 c3324566e3c0c4ad0fd45523f6ff4fa9 102 Pfam PF02954 Bacterial regulatory protein, Fis family 56 96 1.9E-16 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_1167 ef661ca0e7b253cd547e10103f78545a 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 12.258 T 14-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Thimo_1167 ef661ca0e7b253cd547e10103f78545a 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 3.2E-45 T 14-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 Thimo_1167 ef661ca0e7b253cd547e10103f78545a 156 SUPERFAMILY SSF81573 64 121 2.35E-13 T 14-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily Thimo_1167 ef661ca0e7b253cd547e10103f78545a 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 1.8E-31 T 14-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Thimo_1167 ef661ca0e7b253cd547e10103f78545a 156 Gene3D G3DSA:1.20.5.620 63 122 7.9E-17 T 14-10-2018 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 Gene3D G3DSA:1.10.8.60 315 388 4.2E-24 T 14-10-2018 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 1.4E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 1.4E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 Gene3D G3DSA:1.10.10.60 389 469 1.7E-14 T 14-10-2018 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 Gene3D G3DSA:3.40.50.300 136 314 6.2E-64 T 14-10-2018 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 SMART SM00382 164 307 3.5E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 SUPERFAMILY SSF52540 144 387 1.62E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 Pfam PF00072 Response regulator receiver domain 6 115 1.8E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 SUPERFAMILY SSF52172 1 187 4.27E-46 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 SUPERFAMILY SSF46689 410 465 2.02E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 Gene3D G3DSA:3.40.50.2300 2 135 8.4E-38 T 14-10-2018 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 Pfam PF00158 Sigma-54 interaction domain 144 310 1.9E-67 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 SMART SM00448 4 115 6.5E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0823 46d9a7a154601dbe55af12328b676da1 473 Pfam PF02954 Bacterial regulatory protein, Fis family 423 463 4.2E-14 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_1087 ee83644824e101e35cd4232954722811 884 Gene3D G3DSA:3.40.50.920 703 884 1.3E-75 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_1087 ee83644824e101e35cd4232954722811 884 SUPERFAMILY SSF52518 469 697 1.53E-96 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1087 ee83644824e101e35cd4232954722811 884 SUPERFAMILY SSF52518 55 465 1.32E-144 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1087 ee83644824e101e35cd4232954722811 884 PIRSF PIRSF000156 1 884 0.0 T 14-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Thimo_1087 ee83644824e101e35cd4232954722811 884 Gene3D G3DSA:3.40.50.970 469 702 2.9E-111 T 14-10-2018 Thimo_1087 ee83644824e101e35cd4232954722811 884 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 4 882 0.0 T 14-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Thimo_1087 ee83644824e101e35cd4232954722811 884 Gene3D G3DSA:3.40.50.970 54 468 1.4E-134 T 14-10-2018 Thimo_1087 ee83644824e101e35cd4232954722811 884 SUPERFAMILY SSF52922 698 883 1.34E-61 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_1087 ee83644824e101e35cd4232954722811 884 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 138 291 9.9E-10 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 ProSitePatterns PS00692 NifH/frxC family signature 2. 153 166 - T 14-10-2018 IPR030655 NifH/chlL conserved site Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 Gene3D G3DSA:3.40.50.300 30 297 5.1E-65 T 14-10-2018 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 PIRSF PIRSF000363 30 297 1.8E-102 T 14-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 ProSitePatterns PS00746 NifH/frxC family signature 1. 116 128 - T 14-10-2018 IPR030655 NifH/chlL conserved site Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 PRINTS PR00091 Nitrogenase component II signature 114 128 3.9E-32 T 14-10-2018 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 PRINTS PR00091 Nitrogenase component II signature 152 167 3.9E-32 T 14-10-2018 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 PRINTS PR00091 Nitrogenase component II signature 37 50 3.9E-32 T 14-10-2018 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 PRINTS PR00091 Nitrogenase component II signature 59 74 3.9E-32 T 14-10-2018 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 SUPERFAMILY SSF52540 30 293 3.79E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 34 294 7.4E-85 T 14-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 TIGRFAM TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein 33 295 1.7E-134 T 14-10-2018 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3022 a2885d3464f011873e2778ebe5a1fb79 297 Hamap MF_00355 Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein [bchL]. 32 297 53.413 T 14-10-2018 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3274 64faf3595051fcf90c78083d288a1bac 275 SUPERFAMILY SSF54506 3 274 4.89E-56 T 14-10-2018 Thimo_3274 64faf3595051fcf90c78083d288a1bac 275 Gene3D G3DSA:3.10.310.10 4 271 2.5E-103 T 14-10-2018 Thimo_3274 64faf3595051fcf90c78083d288a1bac 275 Gene3D G3DSA:3.10.310.10 116 262 2.5E-103 T 14-10-2018 Thimo_3274 64faf3595051fcf90c78083d288a1bac 275 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 2 275 39.406 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Thimo_3274 64faf3595051fcf90c78083d288a1bac 275 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 274 3.1E-91 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Thimo_3274 64faf3595051fcf90c78083d288a1bac 275 Pfam PF01678 Diaminopimelate epimerase 153 268 2.4E-26 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Thimo_3274 64faf3595051fcf90c78083d288a1bac 275 Pfam PF01678 Diaminopimelate epimerase 4 124 2.1E-34 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Thimo_3274 64faf3595051fcf90c78083d288a1bac 275 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 65 79 - T 14-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 6.9E-18 T 14-10-2018 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 160 175 6.9E-18 T 14-10-2018 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 6.9E-18 T 14-10-2018 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 6.9E-18 T 14-10-2018 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 SUPERFAMILY SSF51905 8 389 1.2E-58 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 298 311 - T 14-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 Pfam PF01494 FAD binding domain 9 343 2.2E-25 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 Gene3D G3DSA:3.30.9.50 84 273 1.3E-114 T 14-10-2018 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 394 1.5E-135 T 14-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 Thimo_1197 2c12ac2b97c45207cf74379d597f1483 405 Gene3D G3DSA:3.50.50.60 9 342 1.3E-114 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3618 f41cb1d6107de7ec1a329e0ecd26aa8f 354 SUPERFAMILY SSF51726 3 351 1.92E-127 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Thimo_3618 f41cb1d6107de7ec1a329e0ecd26aa8f 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 51.542 T 14-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Thimo_3618 f41cb1d6107de7ec1a329e0ecd26aa8f 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 14-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Thimo_3618 f41cb1d6107de7ec1a329e0ecd26aa8f 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 14-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Thimo_3618 f41cb1d6107de7ec1a329e0ecd26aa8f 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 2.9E-136 T 14-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Thimo_3618 f41cb1d6107de7ec1a329e0ecd26aa8f 354 Gene3D G3DSA:3.20.20.210 1 354 5.6E-164 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Thimo_3618 f41cb1d6107de7ec1a329e0ecd26aa8f 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 1.5E-145 T 14-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Thimo_2379 288eca31aab4af5de0f2303f28ea67b4 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 75 7.2E-36 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Thimo_2379 288eca31aab4af5de0f2303f28ea67b4 78 SMART SM00823 Phosphopantetheine attachment site 5 77 0.0036 T 14-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Thimo_2379 288eca31aab4af5de0f2303f28ea67b4 78 SUPERFAMILY SSF47336 2 77 1.57E-24 T 14-10-2018 IPR036736 ACP-like superfamily Thimo_2379 288eca31aab4af5de0f2303f28ea67b4 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.2E-17 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain Thimo_2379 288eca31aab4af5de0f2303f28ea67b4 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.891 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Thimo_2379 288eca31aab4af5de0f2303f28ea67b4 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 77 0.001 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Thimo_2379 288eca31aab4af5de0f2303f28ea67b4 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site Thimo_2379 288eca31aab4af5de0f2303f28ea67b4 78 Gene3D G3DSA:1.10.1200.10 1 75 3.2E-30 T 14-10-2018 IPR036736 ACP-like superfamily Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 25 36 - T 14-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 Pfam PF06463 Molybdenum Cofactor Synthesis C 190 314 7.7E-37 T 14-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 SMART SM00729 19 222 2.9E-9 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 10 332 37.868 T 14-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 Pfam PF13353 4Fe-4S single cluster domain 26 94 9.3E-5 T 14-10-2018 Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 Gene3D G3DSA:3.20.20.70 7 332 8.0E-86 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 Pfam PF04055 Radical SAM superfamily 24 183 7.4E-28 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 SUPERFAMILY SSF102114 10 296 1.57E-71 T 14-10-2018 Thimo_0352 1edea19f7de963a12c84cc2aa818b9c7 332 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 10 332 7.7E-106 T 14-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_2303 04d54e70e748858096474393d5c343c5 234 SUPERFAMILY SSF46785 79 147 1.8E-5 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1250 c361581a21c524e0660592a03e3eeec6 158 Pfam PF04361 Protein of unknown function (DUF494) 5 158 4.9E-54 T 14-10-2018 IPR007456 Smg Thimo_1250 c361581a21c524e0660592a03e3eeec6 158 Hamap MF_00598 Protein Smg [smg]. 5 158 28.215 T 14-10-2018 IPR007456 Smg Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Pfam PF08544 GHMP kinases C terminal 212 260 5.5E-5 T 14-10-2018 IPR013750 GHMP kinase, C-terminal domain Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 10 280 2.2E-78 T 14-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 SUPERFAMILY SSF54211 11 163 9.87E-41 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 9 270 30.8 T 14-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Pfam PF00288 GHMP kinases N terminal domain 92 148 1.7E-9 T 14-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Gene3D G3DSA:3.30.70.890 165 283 9.9E-28 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 PIRSF PIRSF010376 8 282 1.7E-79 T 14-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 Gene3D G3DSA:3.30.230.10 4 164 3.2E-53 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_3133 013bf10e397f3a7ffe23efbfd1ab4bf2 284 SUPERFAMILY SSF55060 165 281 5.76E-31 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Thimo_2787 d10217188b00504693bc51dad1343e5a 503 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 27 501 1.4E-171 T 14-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Thimo_2787 d10217188b00504693bc51dad1343e5a 503 Gene3D G3DSA:1.10.10.410 441 503 3.9E-28 T 14-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Thimo_2787 d10217188b00504693bc51dad1343e5a 503 SMART SM00845 354 501 1.1E-85 T 14-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Thimo_2787 d10217188b00504693bc51dad1343e5a 503 Pfam PF02637 GatB domain 354 501 3.3E-55 T 14-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Thimo_2787 d10217188b00504693bc51dad1343e5a 503 SUPERFAMILY SSF55931 30 322 6.15E-118 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Thimo_2787 d10217188b00504693bc51dad1343e5a 503 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 170 184 - T 14-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 Thimo_2787 d10217188b00504693bc51dad1343e5a 503 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 28 502 38.892 T 14-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Thimo_2787 d10217188b00504693bc51dad1343e5a 503 Pfam PF02934 GatB/GatE catalytic domain 31 314 1.9E-110 T 14-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 Thimo_2787 d10217188b00504693bc51dad1343e5a 503 Gene3D G3DSA:1.10.150.380 323 440 1.5E-34 T 14-10-2018 Thimo_2787 d10217188b00504693bc51dad1343e5a 503 SUPERFAMILY SSF89095 323 428 2.75E-36 T 14-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 1.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 180 193 1.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 1.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 185 8.9E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 Gene3D G3DSA:3.40.50.1000 7 213 3.7E-59 T 14-10-2018 IPR023214 HAD superfamily Thimo_3651 62467dec89021f3aaa3d903589e12635 225 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 7 220 1.1E-64 T 14-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 4 221 36.769 T 14-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 SUPERFAMILY SSF56784 2 221 1.63E-56 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_3651 62467dec89021f3aaa3d903589e12635 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 124 191 4.8E-8 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 190 5.0E-29 T 14-10-2018 Thimo_3651 62467dec89021f3aaa3d903589e12635 225 Gene3D G3DSA:1.10.150.240 19 90 3.7E-59 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 467 1.6E-236 T 14-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 467 59.059 T 14-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 SUPERFAMILY SSF53732 4 466 2.09E-160 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 ProSitePatterns PS01244 Aconitase family signature 2. 401 414 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 Gene3D G3DSA:3.30.499.10 330 467 2.2E-47 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 Pfam PF00330 Aconitase family (aconitate hydratase) 8 459 9.3E-152 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 Gene3D G3DSA:3.30.499.20 5 287 6.6E-96 T 14-10-2018 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 210 223 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 344 355 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 120 133 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 109 117 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 196 209 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 83 96 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 134 149 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 401 414 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2656 5f34e922ea2512aeead2c6eaae349ca3 467 PRINTS PR00415 Aconitase family signature 287 301 1.8E-48 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 PIRSF PIRSF006337 6 607 1.1E-218 T 14-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 Gene3D G3DSA:2.60.40.10 7 105 1.4E-25 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 Pfam PF00128 Alpha amylase, catalytic domain 131 219 1.1E-15 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 Gene3D G3DSA:1.10.10.760 454 498 3.1E-177 T 14-10-2018 Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 Pfam PF11941 Domain of unknown function (DUF3459) 515 611 1.1E-14 T 14-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 SUPERFAMILY SSF51445 96 525 1.51E-103 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 SMART SM00642 121 468 9.5E-9 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 21 572 9.4E-208 T 14-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 SUPERFAMILY SSF81296 6 99 1.52E-19 T 14-10-2018 IPR014756 Immunoglobulin E-set Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 9 75 3.6E-9 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Thimo_2343 651b46718a688f6ff3470ce8fdfaf41a 626 Gene3D G3DSA:3.20.20.80 109 524 3.1E-177 T 14-10-2018 Thimo_1731 969a8ed0da6501518ec06e90a7045339 231 SMART SM00100 16 135 1.1E-21 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_1731 969a8ed0da6501518ec06e90a7045339 231 SUPERFAMILY SSF51206 11 147 4.19E-32 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_1731 969a8ed0da6501518ec06e90a7045339 231 Gene3D G3DSA:1.10.10.10 149 223 2.0E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1731 969a8ed0da6501518ec06e90a7045339 231 Pfam PF13545 Crp-like helix-turn-helix domain 155 223 3.1E-12 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_1731 969a8ed0da6501518ec06e90a7045339 231 Gene3D G3DSA:2.60.120.10 3 148 7.4E-43 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_1731 969a8ed0da6501518ec06e90a7045339 231 SUPERFAMILY SSF46785 151 220 1.95E-9 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1731 969a8ed0da6501518ec06e90a7045339 231 Pfam PF00027 Cyclic nucleotide-binding domain 36 121 1.3E-17 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_2887 6306efcbf43a139adaa6d4d19b5500b8 891 Gene3D G3DSA:3.40.50.10140 1 119 1.8E-16 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_2887 6306efcbf43a139adaa6d4d19b5500b8 891 Gene3D G3DSA:3.90.1580.10 650 888 6.5E-50 T 14-10-2018 Thimo_2887 6306efcbf43a139adaa6d4d19b5500b8 891 SUPERFAMILY SSF56436 648 884 3.77E-52 T 14-10-2018 IPR016187 C-type lectin fold Thimo_2887 6306efcbf43a139adaa6d4d19b5500b8 891 Pfam PF13676 TIR domain 7 104 1.7E-12 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_2887 6306efcbf43a139adaa6d4d19b5500b8 891 SUPERFAMILY SSF52540 163 435 1.4E-9 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2887 6306efcbf43a139adaa6d4d19b5500b8 891 SUPERFAMILY SSF52200 4 121 9.94E-13 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_2887 6306efcbf43a139adaa6d4d19b5500b8 891 Pfam PF03781 Sulfatase-modifying factor enzyme 1 654 882 5.0E-47 T 14-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Thimo_2887 6306efcbf43a139adaa6d4d19b5500b8 891 Gene3D G3DSA:3.40.50.300 173 247 3.2E-5 T 14-10-2018 Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 Pfam PF05175 Methyltransferase small domain 124 210 8.7E-17 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 SUPERFAMILY SSF53335 11 290 1.52E-51 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 Gene3D G3DSA:1.10.8.10 9 97 1.1E-8 T 14-10-2018 Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 PIRSF PIRSF037167 2 303 5.3E-123 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 1 296 49.788 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 200 206 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 10 299 2.1E-78 T 14-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 Gene3D G3DSA:3.40.50.150 98 269 1.1E-45 T 14-10-2018 Thimo_0424 eab148ffecb529f5827ed1392f8889fa 308 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 8 291 3.1E-121 T 14-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 Gene3D G3DSA:1.20.1560.10 19 340 8.7E-82 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 SMART SM00382 380 566 1.2E-19 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 Pfam PF00664 ABC transporter transmembrane region 38 302 1.4E-51 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 SUPERFAMILY SSF90123 24 342 1.83E-73 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 SUPERFAMILY SSF52540 344 591 1.48E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 Pfam PF00005 ABC transporter 373 520 8.4E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 17 591 4.2E-241 T 14-10-2018 IPR011918 ABC transporter, ATP-binding/permease protein Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 Gene3D G3DSA:3.40.50.300 346 599 7.1E-91 T 14-10-2018 Thimo_2820 10c07c3ebc57d35c655f50236ceee01f 606 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_3129 5039d85f243c27cb465e4ea5f665d159 287 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 7 282 38.109 T 14-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Thimo_3129 5039d85f243c27cb465e4ea5f665d159 287 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 29 278 3.0E-77 T 14-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Thimo_3129 5039d85f243c27cb465e4ea5f665d159 287 Pfam PF05175 Methyltransferase small domain 107 197 2.8E-13 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Thimo_3129 5039d85f243c27cb465e4ea5f665d159 287 SUPERFAMILY SSF53335 10 281 2.45E-51 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3129 5039d85f243c27cb465e4ea5f665d159 287 Gene3D G3DSA:1.10.8.10 6 90 8.4E-17 T 14-10-2018 Thimo_3129 5039d85f243c27cb465e4ea5f665d159 287 Gene3D G3DSA:3.40.50.150 91 281 9.3E-54 T 14-10-2018 Thimo_3129 5039d85f243c27cb465e4ea5f665d159 287 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 187 193 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Thimo_3129 5039d85f243c27cb465e4ea5f665d159 287 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 25 281 5.3E-62 T 14-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Thimo_3345 bc93980283d1a49c5131e2e81dbefad8 103 Pfam PF09413 Putative prokaryotic signal transducing protein 1 67 3.1E-12 T 14-10-2018 IPR018551 Domain of unknown function DUF2007 Thimo_2919 cb0414a1aa4216a41441b07e4504b960 545 SUPERFAMILY SSF53383 73 538 6.4E-51 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2919 cb0414a1aa4216a41441b07e4504b960 545 Gene3D G3DSA:3.90.1150.10 84 96 5.6E-47 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2919 cb0414a1aa4216a41441b07e4504b960 545 Pfam PF00266 Aminotransferase class-V 93 300 1.3E-19 T 14-10-2018 IPR000192 Aminotransferase class V domain Thimo_2919 cb0414a1aa4216a41441b07e4504b960 545 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 270 289 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_2919 cb0414a1aa4216a41441b07e4504b960 545 Gene3D G3DSA:3.40.640.10 97 294 5.6E-47 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2919 cb0414a1aa4216a41441b07e4504b960 545 Gene3D G3DSA:3.90.1150.10 375 541 1.2E-7 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_3268 1d33dfc78afcd659cf34a355f16a6be0 352 Gene3D G3DSA:3.30.1330.10 23 171 5.5E-50 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_3268 1d33dfc78afcd659cf34a355f16a6be0 352 PIRSF PIRSF005644 19 352 9.3E-126 T 14-10-2018 IPR011854 Carbamoyl dehydratase HypE Thimo_3268 1d33dfc78afcd659cf34a355f16a6be0 352 SUPERFAMILY SSF55326 24 169 6.28E-34 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_3268 1d33dfc78afcd659cf34a355f16a6be0 352 Gene3D G3DSA:3.90.650.10 172 352 1.1E-57 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_3268 1d33dfc78afcd659cf34a355f16a6be0 352 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 22 352 4.5E-141 T 14-10-2018 IPR011854 Carbamoyl dehydratase HypE Thimo_3268 1d33dfc78afcd659cf34a355f16a6be0 352 Pfam PF00586 AIR synthase related protein, N-terminal domain 66 166 6.1E-18 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Thimo_3268 1d33dfc78afcd659cf34a355f16a6be0 352 Pfam PF02769 AIR synthase related protein, C-terminal domain 178 329 8.3E-29 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Thimo_3268 1d33dfc78afcd659cf34a355f16a6be0 352 SUPERFAMILY SSF56042 172 348 1.41E-48 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_0730 712fdc91fdaddbbe2bedc8d27ada4469 147 Pfam PF07977 FabA-like domain 13 138 6.6E-37 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Thimo_0730 712fdc91fdaddbbe2bedc8d27ada4469 147 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 4 143 4.0E-60 T 14-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Thimo_0730 712fdc91fdaddbbe2bedc8d27ada4469 147 SUPERFAMILY SSF54637 3 143 4.49E-47 T 14-10-2018 IPR029069 HotDog domain superfamily Thimo_0730 712fdc91fdaddbbe2bedc8d27ada4469 147 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 4 146 35.261 T 14-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Thimo_0730 712fdc91fdaddbbe2bedc8d27ada4469 147 Gene3D G3DSA:3.10.129.10 1 146 2.3E-58 T 14-10-2018 Thimo_1326 fc73dc397d15e0cb3ecd6a99a4574532 156 Pfam PF02542 YgbB family 1 154 4.3E-64 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Thimo_1326 fc73dc397d15e0cb3ecd6a99a4574532 156 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 14-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Thimo_1326 fc73dc397d15e0cb3ecd6a99a4574532 156 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 34.842 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Thimo_1326 fc73dc397d15e0cb3ecd6a99a4574532 156 SUPERFAMILY SSF69765 2 154 4.06E-62 T 14-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Thimo_1326 fc73dc397d15e0cb3ecd6a99a4574532 156 Gene3D G3DSA:3.30.1330.50 1 156 9.2E-66 T 14-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Thimo_1326 fc73dc397d15e0cb3ecd6a99a4574532 156 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 154 1.2E-61 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 Gene3D G3DSA:3.30.930.10 152 501 1.5E-129 T 14-10-2018 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 Pfam PF01336 OB-fold nucleic acid binding domain 62 140 1.2E-16 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 15 498 44.776 T 14-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 Gene3D G3DSA:2.40.50.140 9 148 2.8E-42 T 14-10-2018 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 SUPERFAMILY SSF55681 156 496 2.39E-120 T 14-10-2018 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 SUPERFAMILY SSF50249 7 149 1.03E-43 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 10 497 9.8E-206 T 14-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 209 225 1.6E-38 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 238 251 1.6E-38 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 256 273 1.6E-38 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 193 203 1.6E-38 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 PRINTS PR00982 Lysyl-tRNA synthetase signature 380 396 1.6E-38 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_1955 499f447099d92c9d29133bb1072e21a7 502 Pfam PF00152 tRNA synthetases class II (D, K and N) 158 495 6.6E-81 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1275 83d70589545bb4a402342fc4d36f50a7 97 SUPERFAMILY SSF143430 4 70 1.44E-21 T 14-10-2018 Thimo_1275 83d70589545bb4a402342fc4d36f50a7 97 Pfam PF09827 CRISPR associated protein Cas2 5 69 5.0E-17 T 14-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Thimo_1275 83d70589545bb4a402342fc4d36f50a7 97 Gene3D G3DSA:3.30.70.240 1 87 6.5E-22 T 14-10-2018 Thimo_1275 83d70589545bb4a402342fc4d36f50a7 97 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 4 96 15.133 T 14-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Thimo_1275 83d70589545bb4a402342fc4d36f50a7 97 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 4 70 2.2E-12 T 14-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Thimo_1295 5c2187ffc759e685c075224c7afdbff7 85 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 9 84 7.3E-35 T 14-10-2018 IPR019886 Sodium symporter small subunit, predicted Thimo_1295 5c2187ffc759e685c075224c7afdbff7 85 Pfam PF13937 Domain of unknown function (DUF4212) 7 83 5.2E-35 T 14-10-2018 IPR019886 Sodium symporter small subunit, predicted Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 Gene3D G3DSA:3.40.50.10490 10 504 2.0E-232 T 14-10-2018 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 SUPERFAMILY SSF53697 5 545 7.51E-221 T 14-10-2018 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 43 522 42.063 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 Gene3D G3DSA:3.40.50.10490 95 289 2.0E-232 T 14-10-2018 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 263 276 - T 14-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 Gene3D G3DSA:1.10.1390.10 505 546 2.5E-17 T 14-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 Pfam PF00342 Phosphoglucose isomerase 49 539 5.7E-227 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 495 512 - T 14-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 259 277 1.6E-54 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 495 508 1.6E-54 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 336 357 1.6E-54 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 463 481 1.6E-54 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 147 166 1.6E-54 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_3517 7d60bccbffd1fbe77f0b018cc350b1c6 547 PRINTS PR00662 Glucose-6-phosphate isomerase signature 481 495 1.6E-54 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2946 884408fd03b9fb7d803e4c041767ab0f 872 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 50 841 5.4E-269 T 14-10-2018 IPR018752 Uncharacterised protein family UPF0753 Thimo_2946 884408fd03b9fb7d803e4c041767ab0f 872 Hamap MF_01871 UPF0753 protein . 45 856 23.857 T 14-10-2018 IPR018752 Uncharacterised protein family UPF0753 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 Gene3D G3DSA:3.40.50.720 4 327 2.4E-147 T 14-10-2018 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 PIRSF PIRSF000149 1 332 4.1E-131 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 SUPERFAMILY SSF55347 150 314 7.44E-72 T 14-10-2018 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 14-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 103 1.7E-38 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 SUPERFAMILY SSF51735 3 167 1.63E-64 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 SMART SM00846 3 151 8.7E-96 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 314 7.0E-66 T 14-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 2.2E-43 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 2.2E-43 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 2.2E-43 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 2.2E-43 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 2.2E-43 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 Gene3D G3DSA:3.30.360.10 150 316 2.4E-147 T 14-10-2018 Thimo_2175 5c2f158a060904a4aebfb43db0da0bb4 332 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 1.1E-133 T 14-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_0467 589acc11a8bd7bd5cd31984cc5666d41 230 Gene3D G3DSA:1.10.1060.10 100 230 1.1E-55 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0467 589acc11a8bd7bd5cd31984cc5666d41 230 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 2 104 3.4E-31 T 14-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0467 589acc11a8bd7bd5cd31984cc5666d41 230 SUPERFAMILY SSF46548 100 229 2.79E-37 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0467 589acc11a8bd7bd5cd31984cc5666d41 230 Gene3D G3DSA:3.10.20.30 1 99 2.6E-32 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_0467 589acc11a8bd7bd5cd31984cc5666d41 230 SUPERFAMILY SSF54292 2 99 1.15E-27 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Thimo_0467 589acc11a8bd7bd5cd31984cc5666d41 230 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 5 222 2.6E-79 T 14-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0467 589acc11a8bd7bd5cd31984cc5666d41 230 Pfam PF13534 4Fe-4S dicluster domain 140 213 2.7E-10 T 14-10-2018 Thimo_0467 589acc11a8bd7bd5cd31984cc5666d41 230 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 141 152 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0197 225f669fc28a073ad000b63a824299cf 454 Gene3D G3DSA:1.10.3860.10 1 417 3.6E-130 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Thimo_0197 225f669fc28a073ad000b63a824299cf 454 Pfam PF00375 Sodium:dicarboxylate symporter family 3 401 5.2E-122 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Thimo_0197 225f669fc28a073ad000b63a824299cf 454 SUPERFAMILY SSF118215 3 403 4.05E-112 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Thimo_0197 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 82 107 4.6E-34 T 14-10-2018 Thimo_0197 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 1 20 4.6E-34 T 14-10-2018 Thimo_0197 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 4.6E-34 T 14-10-2018 Thimo_0197 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 4.6E-34 T 14-10-2018 Thimo_0197 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 4.6E-34 T 14-10-2018 Thimo_0197 225f669fc28a073ad000b63a824299cf 454 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 4.6E-34 T 14-10-2018 Thimo_0720 bebfaba8194098011022a125a07d9382 295 SUPERFAMILY SSF54713 154 293 5.36E-51 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Thimo_0720 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:1.10.286.20 194 240 8.3E-43 T 14-10-2018 Thimo_0720 bebfaba8194098011022a125a07d9382 295 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 293 4.4E-103 T 14-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_0720 bebfaba8194098011022a125a07d9382 295 SUPERFAMILY SSF46934 1 55 4.38E-19 T 14-10-2018 IPR009060 UBA-like superfamily GO:0005515 Thimo_0720 bebfaba8194098011022a125a07d9382 295 ProSitePatterns PS01127 Elongation factor Ts signature 2. 76 86 - T 14-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_0720 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:1.10.8.10 1 55 1.8E-25 T 14-10-2018 Thimo_0720 bebfaba8194098011022a125a07d9382 295 Hamap MF_00050 Elongation factor Ts [tsf]. 1 292 78.673 T 14-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_0720 bebfaba8194098011022a125a07d9382 295 Pfam PF00889 Elongation factor TS 72 275 4.3E-69 T 14-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 Thimo_0720 bebfaba8194098011022a125a07d9382 295 SUPERFAMILY SSF54713 55 148 6.05E-21 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Thimo_0720 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:3.30.479.20 56 151 1.0E-25 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Thimo_0720 bebfaba8194098011022a125a07d9382 295 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 14-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Thimo_0720 bebfaba8194098011022a125a07d9382 295 Gene3D G3DSA:3.30.479.20 158 274 8.3E-43 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 SUPERFAMILY SSF53706 3 476 3.27E-124 T 14-10-2018 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 Pfam PF00384 Molybdopterin oxidoreductase 59 479 9.1E-31 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 SUPERFAMILY SSF50692 580 710 4.75E-33 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 SMART SM00926 2 56 2.0E-17 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 3 52 2.8E-13 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:2.40.40.20 570 713 3.3E-27 T 14-10-2018 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:3.40.50.740 69 483 1.1E-100 T 14-10-2018 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 Pfam PF01568 Molydopterin dinucleotide binding domain 585 698 8.8E-24 T 14-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:3.40.228.10 134 333 1.1E-100 T 14-10-2018 Thimo_2260 6754e20e4c3b629b4755ac404e52e3f3 725 Gene3D G3DSA:2.20.25.90 1 61 6.3E-18 T 14-10-2018 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Pfam PF12705 PD-(D/E)XK nuclease superfamily 960 1136 6.6E-7 T 14-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Pfam PF00580 UvrD/REP helicase N-terminal domain 344 444 1.5E-25 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 151 1.3E-26 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 12 1183 4.7E-254 T 14-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 SUPERFAMILY SSF52540 12 839 7.34E-106 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.40.50.300 11 443 1.6E-122 T 14-10-2018 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:1.10.3170.10 151 356 1.6E-122 T 14-10-2018 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.90.320.10 916 1191 1.3E-75 T 14-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 7 1185 20.445 T 14-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 SUPERFAMILY SSF52980 923 1183 4.4E-62 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:3.40.50.300 454 852 4.8E-122 T 14-10-2018 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Pfam PF13361 UvrD-like helicase C-terminal domain 450 831 2.1E-16 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Thimo_2316 d417e2025bb762d781105bc8e5e0a299 1193 Gene3D G3DSA:1.10.486.10 597 739 4.8E-122 T 14-10-2018 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 1.1E-30 T 14-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 SMART SM00357 52 118 2.3E-17 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 Gene3D G3DSA:1.10.720.10 1 47 7.4E-20 T 14-10-2018 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 SMART SM00959 5 47 5.9E-18 T 14-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 7.0E-23 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 4.5E-214 T 14-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.8E-16 T 14-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 418 249.534 T 14-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 Gene3D G3DSA:3.40.50.300 130 417 6.3E-132 T 14-10-2018 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 SUPERFAMILY SSF68912 1 46 5.1E-12 T 14-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 SUPERFAMILY SSF50249 48 125 1.88E-28 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 SMART SM00382 170 355 1.1E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 Gene3D G3DSA:2.40.50.140 48 117 5.0E-34 T 14-10-2018 Thimo_2082 8c8d1ab04410225c9b884522c8164549 418 SUPERFAMILY SSF52540 91 371 1.77E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3499 14717268b1c39ec3c19154f5a1628b95 415 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 337 414 1.6E-20 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3499 14717268b1c39ec3c19154f5a1628b95 415 Gene3D G3DSA:2.60.98.20 147 297 2.7E-30 T 14-10-2018 IPR037058 Flagellar hook protein FlgE superfamily Thimo_3499 14717268b1c39ec3c19154f5a1628b95 415 SUPERFAMILY SSF117143 77 376 9.68E-72 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Thimo_3499 14717268b1c39ec3c19154f5a1628b95 415 Pfam PF07559 Flagellar basal body protein FlaE 181 296 2.6E-21 T 14-10-2018 IPR011491 Flagellar hook protein FlgE Thimo_3499 14717268b1c39ec3c19154f5a1628b95 415 Pfam PF00460 Flagella basal body rod protein 2 32 5.2E-8 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Thimo_3499 14717268b1c39ec3c19154f5a1628b95 415 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 397 1.3E-98 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Thimo_2342 bc3d9ab8beca27509eac0162b4825e85 113 SUPERFAMILY SSF69721 17 105 4.45E-19 T 14-10-2018 IPR025526 DsrC-like domain superfamily Thimo_2342 bc3d9ab8beca27509eac0162b4825e85 113 Pfam PF04358 DsrC like protein 18 104 5.7E-14 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_2342 bc3d9ab8beca27509eac0162b4825e85 113 Gene3D G3DSA:1.10.10.370 47 108 3.3E-13 T 14-10-2018 Thimo_2410 e22dafd73fb4bfdafb7e16567740663c 210 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 31 167 8.5E-53 T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2410 e22dafd73fb4bfdafb7e16567740663c 210 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 52 160 3.3E-20 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2410 e22dafd73fb4bfdafb7e16567740663c 210 SUPERFAMILY SSF56770 31 177 8.77E-54 T 14-10-2018 Thimo_2410 e22dafd73fb4bfdafb7e16567740663c 210 Gene3D G3DSA:3.40.50.12280 14 187 3.9E-57 T 14-10-2018 Thimo_0265 ead92d514add8008f6e0532564d5e40e 456 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 217 436 2.1E-43 T 14-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 Thimo_0265 ead92d514add8008f6e0532564d5e40e 456 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 9 106 2.8E-21 T 14-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 Thimo_0880 ae2c4227efaeff4ffbc7fc274b796e41 513 Gene3D G3DSA:3.40.50.300 260 430 2.0E-23 T 14-10-2018 Thimo_0880 ae2c4227efaeff4ffbc7fc274b796e41 513 SUPERFAMILY SSF52540 272 407 9.14E-19 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0880 ae2c4227efaeff4ffbc7fc274b796e41 513 Pfam PF01926 50S ribosome-binding GTPase 277 373 5.0E-13 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_0895 49f31115e178e9eb504acebbb023b3f7 1244 Pfam PF07916 TraG-like protein, N-terminal region 3 456 5.0E-105 T 14-10-2018 IPR012931 TraG-like, N-terminal Thimo_0895 49f31115e178e9eb504acebbb023b3f7 1244 SUPERFAMILY SSF53955 1087 1210 9.0E-15 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_0895 49f31115e178e9eb504acebbb023b3f7 1244 Gene3D G3DSA:1.10.530.10 1085 1225 2.5E-12 T 14-10-2018 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.40.50.180 36 221 1.1E-62 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.30.450.20 887 1009 3.1E-8 T 14-10-2018 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Pfam PF01339 CheB methylesterase 42 217 2.4E-50 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Pfam PF13596 PAS domain 771 876 8.5E-26 T 14-10-2018 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 SMART SM00091 769 838 65.0 T 14-10-2018 IPR000014 PAS domain Thimo_2489 f503358b0b39369547575b3062c4e417 1033 SMART SM00091 891 958 1.1E-4 T 14-10-2018 IPR000014 PAS domain Thimo_2489 f503358b0b39369547575b3062c4e417 1033 SMART SM00138 240 503 1.1E-70 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 299 311 2.8E-26 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 339 359 2.8E-26 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 443 457 2.8E-26 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 262 275 2.8E-26 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 462 485 2.8E-26 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 PRINTS PR00996 Glutamate methyltransferase family signature 375 391 2.8E-26 T 14-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF47757 242 309 3.66E-14 T 14-10-2018 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF55785 875 996 1.36E-14 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2489 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF53335 306 502 1.54E-48 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.40.50.150 305 504 9.1E-59 T 14-10-2018 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF52738 38 223 1.96E-54 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Pfam PF08448 PAS fold 898 1007 1.7E-9 T 14-10-2018 IPR013656 PAS fold-4 Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Pfam PF01739 CheR methyltransferase, SAM binding domain 307 498 1.3E-48 T 14-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Pfam PF03705 CheR methyltransferase, all-alpha domain 245 292 5.4E-14 T 14-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Thimo_2489 f503358b0b39369547575b3062c4e417 1033 SUPERFAMILY SSF55785 782 888 3.62E-6 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2489 f503358b0b39369547575b3062c4e417 1033 Gene3D G3DSA:3.30.450.20 756 886 4.9E-11 T 14-10-2018 Thimo_3787 cd8b95b986aff48c971c3bfb324c3c37 265 Pfam PF08849 Putative inner membrane protein (DUF1819) 8 195 1.5E-37 T 14-10-2018 IPR014948 Protein of unknown function DUF1819, putative inner membrane Thimo_3787 cd8b95b986aff48c971c3bfb324c3c37 265 Gene3D G3DSA:1.10.3540.10 4 232 1.7E-11 T 14-10-2018 Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 Gene3D G3DSA:3.40.1190.20 9 323 4.4E-104 T 14-10-2018 IPR029056 Ribokinase-like Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 Hamap MF_01603 Bifunctional protein HldE [hldE]. 12 489 41.545 T 14-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 Gene3D G3DSA:3.40.50.620 335 491 2.9E-35 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 16 325 2.0E-109 T 14-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 SUPERFAMILY SSF53613 20 326 9.82E-57 T 14-10-2018 IPR029056 Ribokinase-like Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 347 487 3.3E-59 T 14-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 357 422 1.1E-12 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 Pfam PF00294 pfkB family carbohydrate kinase 20 315 9.2E-43 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 SUPERFAMILY SSF52374 356 486 6.82E-22 T 14-10-2018 Thimo_0517 74c1388eb1e1815acc3af10c66950812 494 Pfam PF01467 Cytidylyltransferase-like 360 452 8.6E-14 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Thimo_0096 7d5f03ecc9a3dc3ca949ffa106ca8033 281 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 83 96 - T 14-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Thimo_0096 7d5f03ecc9a3dc3ca949ffa106ca8033 281 SUPERFAMILY SSF53335 5 280 9.39E-78 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0096 7d5f03ecc9a3dc3ca949ffa106ca8033 281 TIGRFAM TIGR00417 speE: spermidine synthase 7 277 8.1E-81 T 14-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Thimo_0096 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Pfam PF17284 Spermidine synthase tetramerisation domain 7 55 2.7E-15 T 14-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Thimo_0096 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Pfam PF01564 Spermine/spermidine synthase domain 63 241 6.9E-48 T 14-10-2018 Thimo_0096 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 281 35.66 T 14-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Thimo_0096 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Gene3D G3DSA:2.30.140.10 4 58 1.6E-19 T 14-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Thimo_0096 7d5f03ecc9a3dc3ca949ffa106ca8033 281 Gene3D G3DSA:3.40.50.150 61 281 1.7E-64 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 SUPERFAMILY SSF51230 3 97 3.53E-23 T 14-10-2018 IPR011053 Single hybrid motif Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 SUPERFAMILY SSF55424 451 573 8.25E-38 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 117 436 6.3E-66 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PIRSF PIRSF000350 58 575 8.4E-94 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 151 161 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:3.50.50.60 262 382 3.9E-118 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:3.50.50.60 118 441 3.9E-118 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:2.40.50.100 5 83 3.1E-21 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 455 563 6.3E-33 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 117 569 8.7E-152 T 14-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 265 7.2E-39 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 304 7.2E-39 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 401 423 7.2E-39 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 372 388 7.2E-39 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 118 137 7.2E-39 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 SUPERFAMILY SSF51905 118 489 3.1E-60 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 Gene3D G3DSA:3.30.390.30 454 575 1.0E-41 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 250 259 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 373 387 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 286 311 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 165 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 451 472 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 117 139 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 416 423 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 538 558 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 516 531 8.1E-71 T 14-10-2018 Thimo_1085 fc95e5a7dc953a741ea2ed326d70dc50 580 Pfam PF00364 Biotin-requiring enzyme 6 77 5.0E-21 T 14-10-2018 IPR000089 Biotin/lipoyl attachment Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF51735 2078 2332 3.15E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 940 1057 4.3E-34 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 845 861 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SMART SM00825 Beta-ketoacyl synthase 669 1108 3.4E-108 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF47336 1660 1744 1.26E-10 T 14-10-2018 IPR036736 ACP-like superfamily Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Gene3D G3DSA:3.40.50.720 1892 2353 4.6E-91 T 14-10-2018 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF47336 1766 1860 2.22E-10 T 14-10-2018 IPR036736 ACP-like superfamily Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Pfam PF08659 KR domain 2080 2298 1.5E-35 T 14-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Pfam PF00698 Acyl transferase domain 1210 1489 2.1E-27 T 14-10-2018 IPR014043 Acyl transferase Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF51412 312 574 4.07E-16 T 14-10-2018 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2079 2300 7.2E-30 T 14-10-2018 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF53901 665 1098 4.64E-75 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Gene3D G3DSA:3.20.20.70 38 302 2.0E-23 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Gene3D G3DSA:3.20.20.70 308 657 7.6E-65 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 668 932 2.6E-69 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF51735 1901 2062 1.07E-9 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Pfam PF03060 Nitronate monooxygenase 387 640 2.5E-8 T 14-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF51412 41 220 1.83E-8 T 14-10-2018 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Gene3D G3DSA:3.40.366.10 1210 1489 1.7E-75 T 14-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Gene3D G3DSA:3.30.70.250 1332 1400 1.7E-75 T 14-10-2018 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF55048 1337 1399 4.58E-10 T 14-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Pfam PF00550 Phosphopantetheine attachment site 1667 1713 3.2E-6 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Pfam PF00550 Phosphopantetheine attachment site 1769 1816 1.3E-5 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SUPERFAMILY SSF52151 1206 1501 8.63E-53 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1210 1509 5.1E-24 T 14-10-2018 IPR020801 Polyketide synthase, acyl transferase domain Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Gene3D G3DSA:3.40.47.10 663 1175 1.7E-156 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Gene3D G3DSA:1.10.1200.10 1753 1860 2.5E-25 T 14-10-2018 IPR036736 ACP-like superfamily Thimo_1436 db64e1416ea36da5e334f347e30d64fc 2354 Gene3D G3DSA:1.10.1200.10 1651 1750 5.4E-27 T 14-10-2018 IPR036736 ACP-like superfamily Thimo_3118 cd94e559475d57df37738076c8564b6f 97 Hamap MF_00910 Cell division protein FtsL [ftsL]. 6 89 14.943 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Thimo_3118 cd94e559475d57df37738076c8564b6f 97 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 9 88 1.6E-19 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Thimo_3118 cd94e559475d57df37738076c8564b6f 97 Pfam PF04999 Cell division protein FtsL 9 89 4.8E-21 T 14-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 SMART SM00223 39 106 0.0018 T 14-10-2018 IPR000177 Apple domain GO:0005515|GO:0005576|GO:0006508 Reactome: R-HSA-140837 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 SMART SM01360 1165 1254 2.1E-24 T 14-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 SMART SM01359 960 1104 3.3E-41 T 14-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 961 1104 2.2E-16 T 14-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF00024 PAN domain 39 89 1.0E-7 T 14-10-2018 IPR003609 PAN/Apple domain Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 Gene3D G3DSA:1.25.40.10 149 273 1.8E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 SUPERFAMILY SSF48452 154 263 5.48E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF01835 MG2 domain 605 699 2.8E-17 T 14-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 SUPERFAMILY SSF57414 47 87 4.9E-7 T 14-10-2018 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF00207 Alpha-2-macroglobulin family 1166 1237 3.0E-8 T 14-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 PIRSF PIRSF038980 49 1836 0.0 T 14-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 497 598 1.2E-23 T 14-10-2018 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 SUPERFAMILY SSF48239 1371 1625 6.73E-47 T 14-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 Gene3D G3DSA:1.50.10.20 1370 1633 3.0E-25 T 14-10-2018 Thimo_3172 b6bf0aae6360b17886e404ff51945fcb 1836 Gene3D G3DSA:3.50.4.10 40 103 3.5E-10 T 14-10-2018 Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 102 184 9.2E-30 T 14-10-2018 IPR020057 Ribosomal protein L25, beta domain Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 Pfam PF01386 Ribosomal L25p family 9 94 4.8E-27 T 14-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 9 177 2.7E-48 T 14-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 5 97 22.156 T 14-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 187 31.318 T 14-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 Gene3D G3DSA:2.40.240.10 4 97 1.3E-32 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 Gene3D G3DSA:2.170.120.20 100 194 1.3E-27 T 14-10-2018 IPR037121 Ribosomal protein L25, C-terminal Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 SUPERFAMILY SSF50715 11 185 9.77E-57 T 14-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Thimo_3136 da78995c01d74d7620ce159c82beaff4 206 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 12 97 5.0E-22 T 14-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Thimo_1301 109da634338c4a71c987016ab3cf4022 391 SUPERFAMILY SSF52283 3 106 9.26E-20 T 14-10-2018 Thimo_1301 109da634338c4a71c987016ab3cf4022 391 SUPERFAMILY SSF55021 308 385 1.79E-14 T 14-10-2018 Thimo_1301 109da634338c4a71c987016ab3cf4022 391 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 21 306 1.5E-18 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Thimo_1301 109da634338c4a71c987016ab3cf4022 391 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 274 1.6E-41 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Thimo_1301 109da634338c4a71c987016ab3cf4022 391 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 191 213 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Thimo_1301 109da634338c4a71c987016ab3cf4022 391 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 140 167 - T 14-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Thimo_1301 109da634338c4a71c987016ab3cf4022 391 Gene3D G3DSA:3.40.50.720 21 303 1.6E-73 T 14-10-2018 Thimo_1301 109da634338c4a71c987016ab3cf4022 391 Gene3D G3DSA:3.30.70.260 308 386 2.9E-18 T 14-10-2018 Thimo_1301 109da634338c4a71c987016ab3cf4022 391 SUPERFAMILY SSF51735 86 274 3.14E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1301 109da634338c4a71c987016ab3cf4022 391 Gene3D G3DSA:3.40.50.720 84 278 1.6E-73 T 14-10-2018 Thimo_0531 15c3416978609f6d6762718755af6591 1094 Gene3D G3DSA:2.40.50.140 31 126 4.1E-30 T 14-10-2018 Thimo_0531 15c3416978609f6d6762718755af6591 1094 SUPERFAMILY SSF50249 40 126 2.82E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_0531 15c3416978609f6d6762718755af6591 1094 Pfam PF00575 S1 RNA binding domain 36 119 6.2E-12 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_0531 15c3416978609f6d6762718755af6591 1094 SMART SM00316 37 120 1.7E-8 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_0531 15c3416978609f6d6762718755af6591 1094 Hamap MF_00970 Ribonuclease E [rne]. 1 1086 32.609 T 14-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 Thimo_0531 15c3416978609f6d6762718755af6591 1094 Pfam PF10150 Ribonuclease E/G family 122 391 5.1E-98 T 14-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Thimo_0531 15c3416978609f6d6762718755af6591 1094 Gene3D G3DSA:3.40.1260.20 401 508 6.1E-38 T 14-10-2018 Thimo_0531 15c3416978609f6d6762718755af6591 1094 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 5.5E-167 T 14-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Thimo_3303 4ad058afbc176b5d1aa940f8846ae177 306 Pfam PF12483 E3 Ubiquitin ligase 92 187 1.8E-5 T 14-10-2018 IPR022170 E3 Ubiquitin ligase, GIDE-type GO:0004842|GO:0006996|GO:0016567 MetaCyc: PWY-7511|Reactome: R-HSA-5689880 Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 Gene3D G3DSA:1.10.10.60 396 465 1.2E-12 T 14-10-2018 Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 Pfam PF13188 PAS domain 156 207 2.3E-7 T 14-10-2018 IPR000014 PAS domain Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 1.1E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 1.1E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 TIGRFAM TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR 23 465 5.4E-156 T 14-10-2018 IPR011785 Transcription regulator PpsR Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 Pfam PF13426 PAS domain 285 384 3.4E-7 T 14-10-2018 IPR000014 PAS domain Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 SUPERFAMILY SSF55785 276 383 1.06E-10 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 SUPERFAMILY SSF55785 145 242 2.09E-8 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 Pfam PF02954 Bacterial regulatory protein, Fis family 426 463 6.2E-12 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 SMART SM00091 155 222 2.0E-4 T 14-10-2018 IPR000014 PAS domain Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 SMART SM00091 275 341 0.0076 T 14-10-2018 IPR000014 PAS domain Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 Gene3D G3DSA:3.30.450.20 272 386 6.5E-26 T 14-10-2018 Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 Gene3D G3DSA:3.30.450.20 2 125 4.9E-30 T 14-10-2018 Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 SUPERFAMILY SSF46689 401 465 1.57E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 280 391 5.9E-6 T 14-10-2018 IPR000014 PAS domain Thimo_2770 f3ca7b9db1c97a493e71684907555862 474 Gene3D G3DSA:3.30.450.20 150 262 3.2E-15 T 14-10-2018 Thimo_1982 bf566f18b7268cb8bb023b8967b6cd42 66 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 63 1.8E-8 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_1982 bf566f18b7268cb8bb023b8967b6cd42 66 Gene3D G3DSA:3.40.1620.10 1 39 8.6E-8 T 14-10-2018 Thimo_1982 bf566f18b7268cb8bb023b8967b6cd42 66 SUPERFAMILY SSF143120 4 40 4.45E-8 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_1982 bf566f18b7268cb8bb023b8967b6cd42 66 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 39 4.2E-5 T 14-10-2018 Thimo_3569 3758b9100fe6ca43548b5a8aaeda9afa 421 Pfam PF14907 Uncharacterised nucleotidyltransferase 37 291 1.4E-55 T 14-10-2018 IPR039498 Uncharacterised nucleotidyltransferase Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 Gene3D G3DSA:2.60.120.10 7 145 3.2E-10 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 SUPERFAMILY SSF51206 10 141 2.62E-15 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 Pfam PF03445 Putative nucleotidyltransferase DUF294 299 435 1.2E-49 T 14-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 SMART SM00116 163 210 3.9E-8 T 14-10-2018 IPR000644 CBS domain Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 SMART SM00116 227 274 1.5 T 14-10-2018 IPR000644 CBS domain Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 SUPERFAMILY SSF54631 154 272 2.4E-28 T 14-10-2018 Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 Gene3D G3DSA:3.10.580.10 155 276 3.4E-30 T 14-10-2018 Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 Pfam PF00571 CBS domain 220 273 6.0E-6 T 14-10-2018 IPR000644 CBS domain Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 Pfam PF00571 CBS domain 164 207 7.6E-10 T 14-10-2018 IPR000644 CBS domain Thimo_1293 0955dcbb149c686dbabc8ccd9c67a0a5 621 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 472 615 5.4E-47 T 14-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding Thimo_0030 cbe3e9ad1d836b2c93aca2b1a779768c 221 Gene3D G3DSA:3.40.50.150 25 209 1.3E-12 T 14-10-2018 Thimo_0030 cbe3e9ad1d836b2c93aca2b1a779768c 221 Pfam PF13489 Methyltransferase domain 33 110 5.1E-7 T 14-10-2018 Thimo_0030 cbe3e9ad1d836b2c93aca2b1a779768c 221 SUPERFAMILY SSF53335 21 205 3.77E-13 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1935 cd8585364bbd76527a572352bf30c17d 257 SUPERFAMILY SSF141371 12 120 2.16E-8 T 14-10-2018 Thimo_1935 cd8585364bbd76527a572352bf30c17d 257 Pfam PF07238 PilZ domain 13 113 8.3E-12 T 14-10-2018 IPR009875 PilZ domain GO:0035438 Thimo_1935 cd8585364bbd76527a572352bf30c17d 257 Gene3D G3DSA:2.40.10.220 10 125 1.2E-10 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF81660 383 583 1.37E-51 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 134 243 3.8E-20 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 651 761 2.9E-33 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 258 399 8.5E-25 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 378 384 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 Pfam PF00122 E1-E2 ATPase 163 355 3.3E-54 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 537 555 9.7E-18 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 680 696 9.7E-18 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 652 668 9.7E-18 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 712 737 9.7E-18 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF81653 165 275 1.16E-28 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF56784 374 786 1.19E-64 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 Pfam PF00702 haloacid dehalogenase-like hydrolase 374 694 1.5E-26 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 Pfam PF00689 Cation transporting ATPase, C-terminus 766 937 2.6E-42 T 14-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:3.40.1110.10 386 586 6.7E-291 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 SMART SM00831 55 128 7.6E-33 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 Pfam PF00690 Cation transporter/ATPase, N-terminus 56 122 9.0E-20 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:2.70.150.10 71 278 6.7E-291 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 SUPERFAMILY SSF81665 54 943 1.57E-123 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:3.40.50.1000 373 725 6.7E-291 T 14-10-2018 IPR023214 HAD superfamily Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 Gene3D G3DSA:1.20.1110.10 106 936 6.7E-291 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 376 390 4.9E-44 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 680 699 4.9E-44 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 704 716 4.9E-44 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 601 611 4.9E-44 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 579 590 4.9E-44 T 14-10-2018 Thimo_1843 141a5aa52c49908b29a088198c84abb0 954 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 213 227 4.9E-44 T 14-10-2018 Thimo_1951 8ede8528c5723d082900e5578ffaed35 225 Gene3D G3DSA:1.10.530.10 88 222 3.1E-40 T 14-10-2018 Thimo_1951 8ede8528c5723d082900e5578ffaed35 225 SUPERFAMILY SSF53955 84 214 4.93E-43 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_1951 8ede8528c5723d082900e5578ffaed35 225 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 113 141 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Thimo_1951 8ede8528c5723d082900e5578ffaed35 225 Pfam PF01464 Transglycosylase SLT domain 96 193 4.2E-25 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Thimo_1951 8ede8528c5723d082900e5578ffaed35 225 Pfam PF13511 Domain of unknown function (DUF4124) 11 58 1.0E-6 T 14-10-2018 IPR025392 Domain of unknown function DUF4124 Thimo_3070 dee9297ea2f24a3ca00c2d6012dcbeaf 408 Pfam PF00534 Glycosyl transferases group 1 219 380 8.4E-31 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_3070 dee9297ea2f24a3ca00c2d6012dcbeaf 408 Gene3D G3DSA:3.40.50.2000 22 199 3.5E-5 T 14-10-2018 Thimo_3070 dee9297ea2f24a3ca00c2d6012dcbeaf 408 SUPERFAMILY SSF53756 27 403 1.41E-59 T 14-10-2018 Thimo_3070 dee9297ea2f24a3ca00c2d6012dcbeaf 408 Gene3D G3DSA:3.40.50.2000 200 386 5.0E-42 T 14-10-2018 Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 SUPERFAMILY SSF53163 10 165 1.75E-41 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 Pfam PF01750 Hydrogenase maturation protease 28 154 2.1E-25 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 12 155 3.2E-40 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 PRINTS PR00446 Hydrogen uptake protein signature 11 23 3.7E-16 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 PRINTS PR00446 Hydrogen uptake protein signature 64 74 3.7E-16 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 PRINTS PR00446 Hydrogen uptake protein signature 75 91 3.7E-16 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 PRINTS PR00446 Hydrogen uptake protein signature 23 34 3.7E-16 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 PRINTS PR00446 Hydrogen uptake protein signature 43 60 3.7E-16 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2438 fcc18f45f4137c5ba7780fed4e8652d4 179 Gene3D G3DSA:3.40.50.1450 10 168 1.9E-42 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Thimo_2408 61214a878e5b9e5aa3f0abb60634d109 595 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 344 370 4.4E-9 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2408 61214a878e5b9e5aa3f0abb60634d109 595 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 191 215 4.4E-9 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2408 61214a878e5b9e5aa3f0abb60634d109 595 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 124 148 4.4E-9 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2408 61214a878e5b9e5aa3f0abb60634d109 595 Pfam PF00361 Proton-conducting membrane transporter 89 383 4.9E-50 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2821 b7b5b1c04d37d0a37f450065bc0958d3 124 Pfam PF13411 MerR HTH family regulatory protein 25 90 1.4E-22 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_2821 b7b5b1c04d37d0a37f450065bc0958d3 124 Gene3D G3DSA:1.10.1660.10 20 94 5.9E-22 T 14-10-2018 Thimo_2821 b7b5b1c04d37d0a37f450065bc0958d3 124 SMART SM00422 25 95 6.1E-11 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_2821 b7b5b1c04d37d0a37f450065bc0958d3 124 SUPERFAMILY SSF46955 23 120 2.66E-19 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 SUPERFAMILY SSF49265 525 657 6.59E-7 T 14-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 192 202 - T 14-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 Pfam PF00082 Subtilase family 151 407 1.7E-41 T 14-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 153 164 - T 14-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 PRINTS PR00723 Subtilisin serine protease family (S8) signature 188 201 7.7E-15 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 PRINTS PR00723 Subtilisin serine protease family (S8) signature 350 366 7.7E-15 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 PRINTS PR00723 Subtilisin serine protease family (S8) signature 148 167 7.7E-15 T 14-10-2018 IPR015500 Peptidase S8, subtilisin-related Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 Gene3D G3DSA:2.60.40.10 421 510 2.9E-10 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 Gene3D G3DSA:2.60.40.10 513 599 1.2E-13 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 Gene3D G3DSA:2.60.40.10 605 710 7.5E-11 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 SUPERFAMILY SSF52743 88 425 2.49E-79 T 14-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 Gene3D G3DSA:3.40.50.200 114 419 3.3E-82 T 14-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 Thimo_2277 b565b3cdfab96614216a5c95e4c8ff1e 826 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 351 361 - T 14-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site Thimo_2392 7230031701dbd896421d1a1e5bfe0674 84 SUPERFAMILY SSF50182 7 69 7.51E-25 T 14-10-2018 IPR010920 LSM domain superfamily Thimo_2392 7230031701dbd896421d1a1e5bfe0674 84 Gene3D G3DSA:2.30.30.100 1 82 2.0E-34 T 14-10-2018 Thimo_2392 7230031701dbd896421d1a1e5bfe0674 84 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 28.019 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Thimo_2392 7230031701dbd896421d1a1e5bfe0674 84 Pfam PF17209 Hfq protein 7 69 7.7E-32 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Thimo_2392 7230031701dbd896421d1a1e5bfe0674 84 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 1.8E-30 T 14-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Thimo_2140 1ea45430569e342748febd107ac727f1 156 Pfam PF03703 Bacterial PH domain 77 148 3.7E-15 T 14-10-2018 IPR005182 Domain of unknown function DUF304 Thimo_2281 740bdacad4d77520c2eaee71d559408b 347 Pfam PF01979 Amidohydrolase family 14 308 2.2E-16 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Thimo_2281 740bdacad4d77520c2eaee71d559408b 347 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 6 345 1.4E-138 T 14-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_2281 740bdacad4d77520c2eaee71d559408b 347 ProSitePatterns PS00483 Dihydroorotase signature 2. 248 259 - T 14-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_2281 740bdacad4d77520c2eaee71d559408b 347 ProSitePatterns PS00482 Dihydroorotase signature 1. 14 22 - T 14-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_2281 740bdacad4d77520c2eaee71d559408b 347 Hamap MF_00219 Dihydroorotase [pyrC]. 5 346 47.729 T 14-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_2281 740bdacad4d77520c2eaee71d559408b 347 SUPERFAMILY SSF51556 6 345 1.91E-145 T 14-10-2018 IPR032466 Metal-dependent hydrolase Thimo_2281 740bdacad4d77520c2eaee71d559408b 347 Gene3D G3DSA:3.20.20.140 6 347 2.0E-110 T 14-10-2018 Thimo_2281 740bdacad4d77520c2eaee71d559408b 347 PIRSF PIRSF001237 3 347 3.9E-140 T 14-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0051 88c290c4f87fbb885e58d41948bfcd83 363 SUPERFAMILY SSF53067 91 187 7.9E-15 T 14-10-2018 Thimo_0051 88c290c4f87fbb885e58d41948bfcd83 363 Gene3D G3DSA:3.30.420.380 68 197 3.3E-7 T 14-10-2018 Thimo_0051 88c290c4f87fbb885e58d41948bfcd83 363 Pfam PF11104 Type IV pilus assembly protein PilM; 94 175 5.4E-7 T 14-10-2018 IPR005883 Type IV pilus assembly protein PilM Thimo_0051 88c290c4f87fbb885e58d41948bfcd83 363 Pfam PF05137 Fimbrial assembly protein (PilN) 285 355 7.9E-7 T 14-10-2018 IPR007813 Fimbrial assembly PilN Thimo_0249 6ee90e5354bb72d53b4725956ba6b0b5 86 Pfam PF12838 4Fe-4S dicluster domain 20 69 2.1E-11 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0249 6ee90e5354bb72d53b4725956ba6b0b5 86 SUPERFAMILY SSF54862 7 83 3.24E-18 T 14-10-2018 Thimo_0249 6ee90e5354bb72d53b4725956ba6b0b5 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 20 31 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0249 6ee90e5354bb72d53b4725956ba6b0b5 86 Gene3D G3DSA:3.30.70.20 12 85 8.9E-15 T 14-10-2018 Thimo_0249 6ee90e5354bb72d53b4725956ba6b0b5 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3440 85cab8f7988605b48649762d025169d7 415 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 225 241 - T 14-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Thimo_3440 85cab8f7988605b48649762d025169d7 415 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 411 2.8E-159 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_3440 85cab8f7988605b48649762d025169d7 415 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 412 41.748 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_3440 85cab8f7988605b48649762d025169d7 415 SUPERFAMILY SSF51419 26 282 2.04E-81 T 14-10-2018 IPR029066 PLP-binding barrel Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 1.3E-25 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 1.3E-25 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 369 382 1.3E-25 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 1.3E-25 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 1.3E-25 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 2.7E-31 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 2.7E-31 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 379 401 2.7E-31 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_3440 85cab8f7988605b48649762d025169d7 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 298 316 2.7E-31 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Thimo_3440 85cab8f7988605b48649762d025169d7 415 Gene3D G3DSA:3.20.20.10 34 275 1.0E-151 T 14-10-2018 IPR029066 PLP-binding barrel Thimo_3440 85cab8f7988605b48649762d025169d7 415 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 279 5.9E-74 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Thimo_3440 85cab8f7988605b48649762d025169d7 415 SUPERFAMILY SSF50621 253 411 1.09E-51 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Thimo_3440 85cab8f7988605b48649762d025169d7 415 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 29 368 3.9E-24 T 14-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Thimo_3440 85cab8f7988605b48649762d025169d7 415 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 14-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Thimo_3440 85cab8f7988605b48649762d025169d7 415 Gene3D G3DSA:2.40.37.10 16 408 1.0E-151 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Thimo_3436 674cd9bc3267f108b96c3d5e33363726 431 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 16 424 6.6E-178 T 14-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 Thimo_3436 674cd9bc3267f108b96c3d5e33363726 431 Gene3D G3DSA:3.90.1150.10 13 418 8.6E-169 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_3436 674cd9bc3267f108b96c3d5e33363726 431 SUPERFAMILY SSF53383 6 426 4.9E-131 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_3436 674cd9bc3267f108b96c3d5e33363726 431 Gene3D G3DSA:3.40.640.10 63 333 8.6E-169 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_3436 674cd9bc3267f108b96c3d5e33363726 431 Pfam PF00202 Aminotransferase class-III 26 421 6.4E-127 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_3436 674cd9bc3267f108b96c3d5e33363726 431 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 427 49.596 T 14-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 Thimo_3436 674cd9bc3267f108b96c3d5e33363726 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 245 282 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Thimo_2725 8f635faa1d4105ecabc64b7d6264e136 100 Gene3D G3DSA:3.30.460.10 5 100 2.5E-21 T 14-10-2018 Thimo_2725 8f635faa1d4105ecabc64b7d6264e136 100 SUPERFAMILY SSF81301 14 99 1.46E-15 T 14-10-2018 Thimo_2725 8f635faa1d4105ecabc64b7d6264e136 100 Pfam PF01909 Nucleotidyltransferase domain 21 96 1.3E-7 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 112 125 5.4E-22 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 202 215 5.4E-22 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 126 141 5.4E-22 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 188 201 5.4E-22 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 349 362 5.4E-22 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 PRINTS PR00415 Aconitase family signature 92 100 5.4E-22 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 SUPERFAMILY SSF53732 2 415 1.18E-133 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 Gene3D G3DSA:3.30.499.20 5 269 2.1E-80 T 14-10-2018 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 Gene3D G3DSA:3.30.499.10 275 434 1.6E-43 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 ProSitePatterns PS00450 Aconitase family signature 1. 291 307 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 SUPERFAMILY SSF52016 438 635 2.94E-43 T 14-10-2018 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 Pfam PF00330 Aconitase family (aconitate hydratase) 8 407 3.4E-99 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 Pfam PF00694 Aconitase C-terminal domain 510 577 2.0E-18 T 14-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 Gene3D G3DSA:3.20.19.10 461 638 1.0E-41 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Thimo_0243 f3beca427af8fa754d2d5501cacd9b81 639 ProSitePatterns PS01244 Aconitase family signature 2. 349 362 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.5E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.5E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.5E-12 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 6 248 2.8E-116 T 14-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 7.0E-7 T 14-10-2018 Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 Gene3D G3DSA:3.40.50.720 3 248 5.0E-80 T 14-10-2018 Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.7E-42 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.7E-42 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 2.7E-42 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.7E-42 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.7E-42 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.7E-42 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 246 4.2E-58 T 14-10-2018 Thimo_1646 ab0a70a587d813c4d618f62c185fbbd2 249 SUPERFAMILY SSF51735 6 248 9.48E-80 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0208 d84678df187cee797df85d133a3c1a9e 169 SUPERFAMILY SSF101307 19 165 3.53E-41 T 14-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 Thimo_0208 d84678df187cee797df85d133a3c1a9e 169 Pfam PF04608 Phosphatidylglycerophosphatase A 25 163 4.0E-50 T 14-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 Thimo_0208 d84678df187cee797df85d133a3c1a9e 169 PIRSF PIRSF006162 16 169 2.8E-47 T 14-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Thimo_0742 3ace07b2f78546806a0455305028f93d 298 Gene3D G3DSA:3.40.1160.10 3 298 1.1E-100 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_0742 3ace07b2f78546806a0455305028f93d 298 Hamap MF_00082 Acetylglutamate kinase [argB]. 27 290 49.613 T 14-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Thimo_0742 3ace07b2f78546806a0455305028f93d 298 PIRSF PIRSF000728 13 297 1.7E-105 T 14-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Thimo_0742 3ace07b2f78546806a0455305028f93d 298 SUPERFAMILY SSF53633 8 297 1.24E-93 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_0742 3ace07b2f78546806a0455305028f93d 298 Pfam PF00696 Amino acid kinase family 28 273 6.4E-45 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Thimo_0742 3ace07b2f78546806a0455305028f93d 298 TIGRFAM TIGR00761 argB: acetylglutamate kinase 29 272 8.6E-76 T 14-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Thimo_0742 3ace07b2f78546806a0455305028f93d 298 PRINTS PR00474 Glutamate 5-kinase family signature 197 224 1.8E-8 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Thimo_0742 3ace07b2f78546806a0455305028f93d 298 PRINTS PR00474 Glutamate 5-kinase family signature 247 267 1.8E-8 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Thimo_0742 3ace07b2f78546806a0455305028f93d 298 PRINTS PR00474 Glutamate 5-kinase family signature 59 73 1.8E-8 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Thimo_0303 48854abf0cd33a4e66dc8c18e78a288d 132 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 127 9.824 T 14-10-2018 IPR022907 VapC family GO:0004540 Thimo_0303 48854abf0cd33a4e66dc8c18e78a288d 132 Gene3D G3DSA:3.40.50.1010 1 132 2.2E-30 T 14-10-2018 Thimo_0303 48854abf0cd33a4e66dc8c18e78a288d 132 Pfam PF01850 PIN domain 2 120 3.3E-8 T 14-10-2018 IPR002716 PIN domain Thimo_0303 48854abf0cd33a4e66dc8c18e78a288d 132 SUPERFAMILY SSF88723 1 129 1.93E-16 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_0379 0cca0fed574f6f2d9dfe5700d734bba3 400 Pfam PF02353 Mycolic acid cyclopropane synthetase 120 385 1.6E-87 T 14-10-2018 Thimo_0379 0cca0fed574f6f2d9dfe5700d734bba3 400 Gene3D G3DSA:3.40.50.150 129 394 1.4E-92 T 14-10-2018 Thimo_0379 0cca0fed574f6f2d9dfe5700d734bba3 400 SUPERFAMILY SSF53335 129 389 9.53E-75 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0379 0cca0fed574f6f2d9dfe5700d734bba3 400 PIRSF PIRSF003085 11 399 1.0E-117 T 14-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 Thimo_3632 04195e9c1df09a838a5481525d3e4313 220 SUPERFAMILY SSF52540 8 218 1.35E-10 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3632 04195e9c1df09a838a5481525d3e4313 220 Pfam PF03567 Sulfotransferase family 3 215 1.1E-11 T 14-10-2018 IPR005331 Sulfotransferase GO:0008146|GO:0016021 Thimo_3632 04195e9c1df09a838a5481525d3e4313 220 Gene3D G3DSA:3.40.50.300 9 171 2.2E-5 T 14-10-2018 Thimo_2297 790418a5cec9e56c276c18e5b95e6723 131 SUPERFAMILY SSF54631 1 125 6.95E-32 T 14-10-2018 Thimo_2297 790418a5cec9e56c276c18e5b95e6723 131 Pfam PF00571 CBS domain 3 53 5.1E-12 T 14-10-2018 IPR000644 CBS domain Thimo_2297 790418a5cec9e56c276c18e5b95e6723 131 Pfam PF00571 CBS domain 69 123 8.6E-12 T 14-10-2018 IPR000644 CBS domain Thimo_2297 790418a5cec9e56c276c18e5b95e6723 131 SMART SM00116 74 123 1.2E-6 T 14-10-2018 IPR000644 CBS domain Thimo_2297 790418a5cec9e56c276c18e5b95e6723 131 SMART SM00116 10 58 8.8E-9 T 14-10-2018 IPR000644 CBS domain Thimo_2297 790418a5cec9e56c276c18e5b95e6723 131 Gene3D G3DSA:3.10.580.10 1 130 8.5E-35 T 14-10-2018 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.3E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.3E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.3E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.3E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.3E-39 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 SMART SM00562 3 139 4.4E-85 T 14-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 Gene3D G3DSA:3.30.70.141 1 138 3.1E-59 T 14-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 140 35.284 T 14-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 14-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 SUPERFAMILY SSF54919 1 136 7.99E-59 T 14-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_1894 4b6d5cea3cfd18aa2e8b8e7b905337f8 142 Pfam PF00334 Nucleoside diphosphate kinase 4 135 5.7E-56 T 14-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_2583 a41c266682f0ed28a957ccba374089bf 862 Pfam PF00924 Mechanosensitive ion channel 641 839 4.2E-44 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Thimo_2583 a41c266682f0ed28a957ccba374089bf 862 Gene3D G3DSA:3.30.70.100 747 843 7.0E-16 T 14-10-2018 Thimo_2583 a41c266682f0ed28a957ccba374089bf 862 SUPERFAMILY SSF82689 748 849 2.35E-17 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Thimo_2583 a41c266682f0ed28a957ccba374089bf 862 Gene3D G3DSA:2.30.30.60 697 746 2.1E-10 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Thimo_2583 a41c266682f0ed28a957ccba374089bf 862 SUPERFAMILY SSF82861 592 680 1.16E-9 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Thimo_2583 a41c266682f0ed28a957ccba374089bf 862 SUPERFAMILY SSF50182 681 746 9.81E-13 T 14-10-2018 IPR010920 LSM domain superfamily Thimo_0575 20472e15426805cbce0af8ecdb198d5b 171 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 66 167 1.3E-40 T 14-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 Thimo_0575 20472e15426805cbce0af8ecdb198d5b 171 Gene3D G3DSA:3.30.1330.60 52 169 4.6E-36 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_0575 20472e15426805cbce0af8ecdb198d5b 171 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 3 168 29.57 T 14-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 Thimo_0575 20472e15426805cbce0af8ecdb198d5b 171 Pfam PF00691 OmpA family 67 157 1.5E-20 T 14-10-2018 IPR006665 OmpA-like domain Thimo_0575 20472e15426805cbce0af8ecdb198d5b 171 PRINTS PR01021 OMPA domain signature 113 129 1.6E-15 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_0575 20472e15426805cbce0af8ecdb198d5b 171 PRINTS PR01021 OMPA domain signature 68 90 1.6E-15 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_0575 20472e15426805cbce0af8ecdb198d5b 171 PRINTS PR01021 OMPA domain signature 98 113 1.6E-15 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_0575 20472e15426805cbce0af8ecdb198d5b 171 SUPERFAMILY SSF103088 55 166 2.09E-33 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 Gene3D G3DSA:3.40.120.10 3 148 9.6E-50 T 14-10-2018 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 Gene3D G3DSA:3.40.120.10 255 370 9.8E-32 T 14-10-2018 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 SUPERFAMILY SSF53738 262 364 7.85E-29 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 SUPERFAMILY SSF53738 6 177 5.1E-36 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 Gene3D G3DSA:3.30.310.50 373 454 1.8E-23 T 14-10-2018 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 SUPERFAMILY SSF53738 154 261 1.53E-22 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 262 367 1.1E-22 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 377 449 1.8E-11 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 SUPERFAMILY SSF55957 373 452 1.74E-17 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 Gene3D G3DSA:3.40.120.10 172 254 7.0E-23 T 14-10-2018 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 258 2.2E-17 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 4.6E-34 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 8.4E-27 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 8.4E-27 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 8.4E-27 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_0977 3d6f4a9ae4222ce8c741eac0abee4460 455 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 8.4E-27 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Thimo_1870 545c274f5fb1eba0754c851aae898399 308 Pfam PF01734 Patatin-like phospholipase 19 176 1.5E-19 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Thimo_1870 545c274f5fb1eba0754c851aae898399 308 SUPERFAMILY SSF52151 15 274 1.49E-45 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_1870 545c274f5fb1eba0754c851aae898399 308 Gene3D G3DSA:3.40.1090.10 3 121 2.7E-17 T 14-10-2018 Thimo_1870 545c274f5fb1eba0754c851aae898399 308 Gene3D G3DSA:3.40.1090.20 137 194 2.5E-5 T 14-10-2018 Thimo_0250 4deaa9c9e3075f7b2e3faec78fc26755 388 SUPERFAMILY SSF52518 16 265 5.89E-71 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0250 4deaa9c9e3075f7b2e3faec78fc26755 388 Gene3D G3DSA:3.40.50.970 9 204 2.9E-77 T 14-10-2018 Thimo_0250 4deaa9c9e3075f7b2e3faec78fc26755 388 Gene3D G3DSA:3.40.50.920 276 387 2.2E-19 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_0250 4deaa9c9e3075f7b2e3faec78fc26755 388 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 285 376 5.8E-20 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Thimo_0250 4deaa9c9e3075f7b2e3faec78fc26755 388 SUPERFAMILY SSF52922 278 386 1.57E-22 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_0250 4deaa9c9e3075f7b2e3faec78fc26755 388 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 26 256 1.1E-71 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.1E-87 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 431 533 2.54E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 362 434 1.3E-20 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 190 260 5.0E-26 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 449 520 6.1E-21 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 19 87 4.5E-7 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 103 171 1.5E-9 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SMART SM00316 275 347 2.9E-26 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 255 356 1.29E-27 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 275 347 1.5E-20 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 102 171 1.4E-12 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 448 520 3.2E-17 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 190 260 8.7E-20 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 19 86 1.5E-5 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Pfam PF00575 S1 RNA binding domain 361 434 7.7E-20 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 99 182 1.9E-7 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 6 98 9.6E-18 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 189 277 2.39E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 102 185 5.37E-15 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.4E-217 T 14-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 PIRSF PIRSF002111 1 534 2.6E-215 T 14-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 347 438 5.89E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 SUPERFAMILY SSF50249 1 112 1.25E-19 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 187 268 4.7E-25 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 445 527 3.5E-20 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 269 357 1.3E-29 T 14-10-2018 Thimo_1878 e8f4b7fdae4a1c9784b357367f495e94 559 Gene3D G3DSA:2.40.50.140 358 444 1.9E-24 T 14-10-2018 Thimo_1161 5cff9f8320cd1e01af8e0ea7ee285c7a 212 PIRSF PIRSF003078 5 212 8.3E-53 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Thimo_1161 5cff9f8320cd1e01af8e0ea7ee285c7a 212 Gene3D G3DSA:3.40.50.150 2 212 4.7E-59 T 14-10-2018 Thimo_1161 5cff9f8320cd1e01af8e0ea7ee285c7a 212 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 20 208 26.513 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Thimo_1161 5cff9f8320cd1e01af8e0ea7ee285c7a 212 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 33 209 1.2E-46 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Thimo_1161 5cff9f8320cd1e01af8e0ea7ee285c7a 212 Pfam PF02527 rRNA small subunit methyltransferase G 28 206 9.8E-48 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Thimo_1161 5cff9f8320cd1e01af8e0ea7ee285c7a 212 SUPERFAMILY SSF53335 12 210 2.03E-28 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1658 19a174d06d4d87103fa174eb2350be78 134 SMART SM00363 11 72 3.8E-10 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_1658 19a174d06d4d87103fa174eb2350be78 134 SUPERFAMILY SSF55174 10 99 3.0E-27 T 14-10-2018 Thimo_1658 19a174d06d4d87103fa174eb2350be78 134 Pfam PF01479 S4 domain 12 56 5.0E-13 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_1658 19a174d06d4d87103fa174eb2350be78 134 Gene3D G3DSA:3.10.290.10 4 110 3.2E-34 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Thimo_1658 19a174d06d4d87103fa174eb2350be78 134 PIRSF PIRSF016821 8 134 9.6E-43 T 14-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 Thimo_3012 7290b48ef99a588831ba78b9c43b6c82 509 Pfam PF01593 Flavin containing amine oxidoreductase 28 496 1.0E-36 T 14-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Thimo_3012 7290b48ef99a588831ba78b9c43b6c82 509 Gene3D G3DSA:3.50.50.60 18 111 1.0E-25 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3012 7290b48ef99a588831ba78b9c43b6c82 509 Gene3D G3DSA:3.50.50.60 211 324 6.3E-22 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3012 7290b48ef99a588831ba78b9c43b6c82 509 SUPERFAMILY SSF51905 18 496 9.55E-79 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3012 7290b48ef99a588831ba78b9c43b6c82 509 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 20 505 9.5E-197 T 14-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 Thimo_1195 bc5067d5640c458d8e45f552e8404940 440 Gene3D G3DSA:3.40.350.10 1 170 8.1E-53 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Thimo_1195 bc5067d5640c458d8e45f552e8404940 440 Gene3D G3DSA:3.90.230.10 171 439 6.4E-99 T 14-10-2018 Thimo_1195 bc5067d5640c458d8e45f552e8404940 440 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 125 1.4E-36 T 14-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 Thimo_1195 bc5067d5640c458d8e45f552e8404940 440 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 350 362 - T 14-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site Thimo_1195 bc5067d5640c458d8e45f552e8404940 440 Pfam PF00557 Metallopeptidase family M24 180 415 1.9E-67 T 14-10-2018 IPR000994 Peptidase M24 Thimo_1195 bc5067d5640c458d8e45f552e8404940 440 SMART SM01011 1 135 9.0E-60 T 14-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 Thimo_1195 bc5067d5640c458d8e45f552e8404940 440 SUPERFAMILY SSF55920 174 435 3.53E-84 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like Thimo_1195 bc5067d5640c458d8e45f552e8404940 440 SUPERFAMILY SSF53092 3 173 4.97E-48 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 SMART SM00729 148 368 2.6E-60 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 Pfam PF01938 TRAM domain 379 440 6.0E-17 T 14-10-2018 IPR002792 TRAM domain Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 Pfam PF04055 Radical SAM superfamily 152 326 5.7E-26 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 Gene3D G3DSA:3.40.50.12160 4 138 2.5E-31 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 SUPERFAMILY SSF102114 124 371 9.94E-61 T 14-10-2018 Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 5 440 2.1E-184 T 14-10-2018 Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 Gene3D G3DSA:3.80.30.20 146 381 3.3E-80 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 438 1.8E-144 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 152 172 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 Pfam PF00919 Uncharacterized protein family UPF0004 5 105 1.1E-27 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Thimo_0670 f43e0062759ef9177effadaa43d5c4b6 446 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 4 441 73.451 T 14-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 Pfam PF01580 FtsK/SpoIIIE family 448 666 2.0E-66 T 14-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 SMART SM00843 770 835 6.8E-39 T 14-10-2018 IPR018541 FtsK gamma domain Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 SMART SM00382 483 699 0.0079 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 Pfam PF09397 Ftsk gamma domain 771 832 2.1E-27 T 14-10-2018 IPR018541 FtsK gamma domain Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 17 191 7.2E-39 T 14-10-2018 IPR025199 DNA translocase FtsK, 4TM region Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 SUPERFAMILY SSF52540 421 738 6.27E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 Gene3D G3DSA:3.40.50.300 445 752 4.6E-116 T 14-10-2018 Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 SUPERFAMILY SSF46785 771 835 1.5E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 Gene3D G3DSA:3.30.980.40 340 444 9.9E-33 T 14-10-2018 Thimo_2446 5190088a2b4c66772f063c0d2be3275e 839 Gene3D G3DSA:1.10.10.10 774 836 1.4E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1154 07637947ac018427f66a35b1e8eed93b 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 291 6.2E-22 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_1154 07637947ac018427f66a35b1e8eed93b 296 SUPERFAMILY SSF161098 38 288 3.64E-35 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1154 07637947ac018427f66a35b1e8eed93b 296 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 32 292 4.2E-74 T 14-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Thimo_1154 07637947ac018427f66a35b1e8eed93b 296 Gene3D G3DSA:1.10.3720.10 74 294 1.7E-29 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 Gene3D G3DSA:1.10.10.10 3 91 1.5E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 SUPERFAMILY SSF46785 1 86 1.17E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.2E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.2E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.2E-7 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 Pfam PF03466 LysR substrate binding domain 91 295 1.0E-47 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 SUPERFAMILY SSF53850 93 296 1.9E-43 T 14-10-2018 Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 Gene3D G3DSA:3.40.190.290 93 298 1.7E-42 T 14-10-2018 Thimo_2944 0621ee8874dc63786222722e1b1f5592 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.7E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 378 397 - T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 49 6.4E-15 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 488 7.0E-148 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 Pfam PF04552 Sigma-54, DNA binding domain 333 489 7.2E-69 T 14-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 Gene3D G3DSA:1.10.10.60 431 488 3.2E-23 T 14-10-2018 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 469 476 - T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 Pfam PF04963 Sigma-54 factor, core binding domain 127 317 2.0E-55 T 14-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 Gene3D G3DSA:1.10.10.1330 131 256 3.3E-22 T 14-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PIRSF PIRSF000774 1 491 3.9E-152 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PRINTS PR00045 Sigma-54 factor signature 464 482 8.5E-32 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PRINTS PR00045 Sigma-54 factor signature 200 217 8.5E-32 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PRINTS PR00045 Sigma-54 factor signature 390 402 8.5E-32 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2761 5babfc8c65ec9f12dd1b0d8d8a3baee6 492 PRINTS PR00045 Sigma-54 factor signature 406 417 8.5E-32 T 14-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Thimo_2733 a6a0b59e0c31b81b81ed6860fbe82302 109 Pfam PF09862 Protein of unknown function (DUF2089) 4 102 3.2E-19 T 14-10-2018 IPR018658 Protein of unknown function DUF2089 Thimo_0166 f04301c5f70ba161920d7851eae81cf7 133 Pfam PF13366 PD-(D/E)XK nuclease superfamily 14 129 1.1E-38 T 14-10-2018 IPR026350 GxxExxY protein Thimo_0166 f04301c5f70ba161920d7851eae81cf7 133 TIGRFAM TIGR04256 GxxExxY: GxxExxY protein 15 130 5.2E-41 T 14-10-2018 IPR026350 GxxExxY protein Thimo_2903 77f3df75809e4d688cea9722c52e893a 142 SMART SM01321 11 100 4.5E-9 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_2903 77f3df75809e4d688cea9722c52e893a 142 Gene3D G3DSA:3.30.70.1290 1 96 7.8E-23 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2903 77f3df75809e4d688cea9722c52e893a 142 SUPERFAMILY SSF143422 1 85 1.05E-26 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2903 77f3df75809e4d688cea9722c52e893a 142 Pfam PF01797 Transposase IS200 like 12 85 3.8E-21 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 SUPERFAMILY SSF53720 27 431 1.96E-86 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 Gene3D G3DSA:3.40.50.1980 237 353 4.1E-127 T 14-10-2018 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 Pfam PF00815 Histidinol dehydrogenase 26 431 9.3E-165 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 431 40.329 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 36 430 7.8E-157 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 233 254 1.5E-85 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 36 60 1.5E-85 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 174 200 1.5E-85 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 255 274 1.5E-85 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 324 349 1.5E-85 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 204 229 1.5E-85 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 365 383 1.5E-85 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PRINTS PR00083 Histidinol dehydrogenase signature 140 166 1.5E-85 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 233 265 - T 14-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 Gene3D G3DSA:3.40.50.1980 33 235 4.1E-127 T 14-10-2018 Thimo_2748 84fdcf1cd28dc1aa76411abc91645589 439 PIRSF PIRSF000099 7 432 2.4E-157 T 14-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Thimo_2549 cd0706b575c34ef6b90bf9e219d23086 207 Gene3D G3DSA:3.40.50.150 29 207 3.0E-58 T 14-10-2018 Thimo_2549 cd0706b575c34ef6b90bf9e219d23086 207 SUPERFAMILY SSF53335 29 206 1.48E-39 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2549 cd0706b575c34ef6b90bf9e219d23086 207 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 14 207 30.507 T 14-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 Thimo_2549 cd0706b575c34ef6b90bf9e219d23086 207 Pfam PF01728 FtsJ-like methyltransferase 30 206 1.6E-55 T 14-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Thimo_2549 cd0706b575c34ef6b90bf9e219d23086 207 PIRSF PIRSF005461 1 207 7.8E-74 T 14-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 Thimo_3196 7b263d8f923363817526025c447f93e7 446 SUPERFAMILY SSF55874 306 444 1.26E-26 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3196 7b263d8f923363817526025c447f93e7 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 439 1.2E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3196 7b263d8f923363817526025c447f93e7 446 Gene3D G3DSA:1.10.287.130 190 297 6.7E-8 T 14-10-2018 Thimo_3196 7b263d8f923363817526025c447f93e7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 6.2E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3196 7b263d8f923363817526025c447f93e7 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 6.2E-8 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3196 7b263d8f923363817526025c447f93e7 446 SMART SM00387 343 446 1.5E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3196 7b263d8f923363817526025c447f93e7 446 Gene3D G3DSA:3.30.565.10 304 446 2.0E-27 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3196 7b263d8f923363817526025c447f93e7 446 SUPERFAMILY SSF47384 223 298 8.24E-5 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_3273 b7d1adaac02484a0aec9596de9999713 189 SMART SM00028 106 139 23.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3273 b7d1adaac02484a0aec9596de9999713 189 SMART SM00028 140 173 190.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3273 b7d1adaac02484a0aec9596de9999713 189 SMART SM00028 72 105 1.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3273 b7d1adaac02484a0aec9596de9999713 189 Gene3D G3DSA:1.25.40.10 52 187 6.8E-21 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3273 b7d1adaac02484a0aec9596de9999713 189 Pfam PF14559 Tetratricopeptide repeat 118 175 1.7E-5 T 14-10-2018 Thimo_3273 b7d1adaac02484a0aec9596de9999713 189 SUPERFAMILY SSF48452 73 175 5.93E-20 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3273 b7d1adaac02484a0aec9596de9999713 189 Pfam PF13414 TPR repeat 80 117 9.8E-10 T 14-10-2018 Thimo_2747 7dc418561868ae32c34937545caff2dd 358 Gene3D G3DSA:3.40.640.10 50 264 1.3E-114 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2747 7dc418561868ae32c34937545caff2dd 358 Pfam PF00155 Aminotransferase class I and II 34 354 6.7E-43 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Thimo_2747 7dc418561868ae32c34937545caff2dd 358 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 8 358 56.855 T 14-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Thimo_2747 7dc418561868ae32c34937545caff2dd 358 Gene3D G3DSA:3.90.1150.10 13 352 1.3E-114 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2747 7dc418561868ae32c34937545caff2dd 358 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 10 355 9.8E-96 T 14-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Thimo_2747 7dc418561868ae32c34937545caff2dd 358 SUPERFAMILY SSF53383 10 357 2.72E-72 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Pfam PF07196 Flagellin hook IN motif 202 252 1.6E-5 T 14-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Pfam PF00700 Bacterial flagellin C-terminal helical region 299 384 1.1E-25 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Gene3D G3DSA:1.20.1330.10 44 334 8.2E-101 T 14-10-2018 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Gene3D G3DSA:1.10.8.410 335 384 8.5E-24 T 14-10-2018 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Gene3D G3DSA:3.30.70.2120 175 283 8.2E-101 T 14-10-2018 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PRINTS PR00207 Flagellin signature 76 95 6.7E-29 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PRINTS PR00207 Flagellin signature 111 134 6.7E-29 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 PRINTS PR00207 Flagellin signature 37 54 6.7E-29 T 14-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 143 1.2E-43 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Thimo_0263 ca28a4eb33271d13c3a1f5e30ccf1e91 385 SUPERFAMILY SSF64518 1 384 3.79E-100 T 14-10-2018 Thimo_2247 486ceb2d749687c6587b032ebe28cc2e 357 SUPERFAMILY SSF46689 11 115 7.35E-7 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2247 486ceb2d749687c6587b032ebe28cc2e 357 Gene3D G3DSA:3.30.420.10 136 302 1.7E-9 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2247 486ceb2d749687c6587b032ebe28cc2e 357 SUPERFAMILY SSF53098 141 305 2.58E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2247 486ceb2d749687c6587b032ebe28cc2e 357 Pfam PF00665 Integrase core domain 139 254 2.1E-16 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_2247 486ceb2d749687c6587b032ebe28cc2e 357 Pfam PF13565 Homeodomain-like domain 35 112 2.6E-11 T 14-10-2018 Thimo_2758 6c3729dd16878577a1eaef37fd5b4a73 193 Gene3D G3DSA:2.60.450.10 62 192 2.8E-9 T 14-10-2018 Thimo_2758 6c3729dd16878577a1eaef37fd5b4a73 193 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 7 183 1.1E-40 T 14-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 Thimo_2758 6c3729dd16878577a1eaef37fd5b4a73 193 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 9 183 2.1E-35 T 14-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related Thimo_0762 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 11 271 1.8E-92 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Thimo_0762 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 Pfam PF00753 Metallo-beta-lactamase superfamily 22 184 7.2E-14 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_0762 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 SMART SM00849 19 184 1.3E-24 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_0762 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 9 272 41.318 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Thimo_0762 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 SUPERFAMILY SSF56281 9 271 1.54E-62 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0762 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 185 271 4.4E-23 T 14-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Thimo_0762 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 Gene3D G3DSA:3.60.15.10 5 272 2.3E-77 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_0762 8ddbe6b2d3fb3d0038b5c4cfc17511c9 274 PIRSF PIRSF005457 5 272 6.3E-87 T 14-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Thimo_2339 748afd2de28d2f26fd01368bdc27fc30 264 Gene3D G3DSA:3.40.50.1000 77 188 1.0E-75 T 14-10-2018 IPR023214 HAD superfamily Thimo_2339 748afd2de28d2f26fd01368bdc27fc30 264 TIGRFAM TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family 5 255 2.2E-61 T 14-10-2018 IPR006355 HAD hydrolase, LHPP/HDHD2 Thimo_2339 748afd2de28d2f26fd01368bdc27fc30 264 Gene3D G3DSA:3.40.50.1000 6 255 1.0E-75 T 14-10-2018 IPR023214 HAD superfamily Thimo_2339 748afd2de28d2f26fd01368bdc27fc30 264 Pfam PF13344 Haloacid dehalogenase-like hydrolase 8 88 2.6E-20 T 14-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA Thimo_2339 748afd2de28d2f26fd01368bdc27fc30 264 Pfam PF13242 HAD-hyrolase-like 183 256 1.8E-18 T 14-10-2018 Thimo_2339 748afd2de28d2f26fd01368bdc27fc30 264 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 9 233 2.0E-33 T 14-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA Thimo_2339 748afd2de28d2f26fd01368bdc27fc30 264 SUPERFAMILY SSF56784 5 257 8.53E-53 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_3069 7631b2fe3868969cfbd3cc904a8383cf 317 Pfam PF00535 Glycosyl transferase family 2 14 138 1.0E-24 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Thimo_3069 7631b2fe3868969cfbd3cc904a8383cf 317 Gene3D G3DSA:3.90.550.10 2 243 2.4E-48 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3069 7631b2fe3868969cfbd3cc904a8383cf 317 SUPERFAMILY SSF53448 13 290 8.08E-51 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_2776 2027508033027d4f73ea9667d1a5f528 215 SUPERFAMILY SSF55681 12 187 1.49E-59 T 14-10-2018 Thimo_2776 2027508033027d4f73ea9667d1a5f528 215 Pfam PF03099 Biotin/lipoate A/B protein ligase family 53 159 4.3E-6 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Thimo_2776 2027508033027d4f73ea9667d1a5f528 215 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 29 181 2.0E-53 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Thimo_2776 2027508033027d4f73ea9667d1a5f528 215 Hamap MF_00013 Octanoyltransferase [lipB]. 4 207 34.108 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Thimo_2776 2027508033027d4f73ea9667d1a5f528 215 Gene3D G3DSA:3.30.930.10 3 192 1.2E-54 T 14-10-2018 Thimo_2776 2027508033027d4f73ea9667d1a5f528 215 PIRSF PIRSF016262 2 211 7.8E-50 T 14-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 601 617 3.1E-55 T 14-10-2018 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 709 728 3.1E-55 T 14-10-2018 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 732 750 3.1E-55 T 14-10-2018 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 679 698 3.1E-55 T 14-10-2018 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 362 381 3.1E-55 T 14-10-2018 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 TIGRFAM TIGR00763 lon: endopeptidase La 17 776 3.1E-300 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Gene3D G3DSA:3.40.50.300 321 496 3.3E-63 T 14-10-2018 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 16 207 4.3E-40 T 14-10-2018 IPR003111 Lon, substrate-binding domain Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 358 495 9.5E-19 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 682 690 - T 14-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Gene3D G3DSA:2.30.130.40 9 120 1.1E-31 T 14-10-2018 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Gene3D G3DSA:3.30.230.10 591 778 2.1E-82 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0432 b28d29f97336800af51cdb83e5586798 815 SUPERFAMILY SSF88697 15 207 1.69E-49 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_0432 b28d29f97336800af51cdb83e5586798 815 SMART SM00382 354 498 1.4E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0432 b28d29f97336800af51cdb83e5586798 815 SUPERFAMILY SSF52540 321 592 1.42E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 576 777 1.9E-96 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 PIRSF PIRSF001174 2 781 0.0 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 SUPERFAMILY SSF54211 601 776 4.55E-60 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Gene3D G3DSA:1.10.8.60 497 590 5.0E-34 T 14-10-2018 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Hamap MF_01973 Lon protease [lon]. 16 778 71.803 T 14-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Thimo_0432 b28d29f97336800af51cdb83e5586798 815 SMART SM00464 15 208 3.2E-76 T 14-10-2018 IPR003111 Lon, substrate-binding domain Thimo_0432 b28d29f97336800af51cdb83e5586798 815 Gene3D G3DSA:1.20.58.1480 127 250 4.2E-45 T 14-10-2018 Thimo_1953 943c72efe62a793ce2b4a57fc66fba2d 607 SUPERFAMILY SSF50249 178 545 1.63E-84 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1953 943c72efe62a793ce2b4a57fc66fba2d 607 SMART SM00955 232 504 2.7E-63 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Thimo_1953 943c72efe62a793ce2b4a57fc66fba2d 607 Pfam PF00773 RNB domain 454 503 1.1E-12 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Thimo_1953 943c72efe62a793ce2b4a57fc66fba2d 607 Pfam PF00773 RNB domain 232 443 2.1E-33 T 14-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Thimo_1953 943c72efe62a793ce2b4a57fc66fba2d 607 SUPERFAMILY SSF50249 548 604 1.18E-8 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1953 943c72efe62a793ce2b4a57fc66fba2d 607 Gene3D G3DSA:1.10.10.10 153 223 1.3E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 PRINTS PR00419 Adrenodoxin reductase family signature 293 307 2.2E-23 T 14-10-2018 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 PRINTS PR00419 Adrenodoxin reductase family signature 217 227 2.2E-23 T 14-10-2018 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 PRINTS PR00419 Adrenodoxin reductase family signature 175 188 2.2E-23 T 14-10-2018 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 PRINTS PR00419 Adrenodoxin reductase family signature 152 174 2.2E-23 T 14-10-2018 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 Gene3D G3DSA:1.10.1060.10 14 143 2.1E-22 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 SUPERFAMILY SSF51971 380 481 1.65E-9 T 14-10-2018 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 Gene3D G3DSA:3.50.50.60 147 275 5.8E-32 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 SUPERFAMILY SSF51971 151 412 3.65E-58 T 14-10-2018 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 Gene3D G3DSA:3.50.50.60 394 481 7.7E-8 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 SUPERFAMILY SSF46548 4 161 5.75E-32 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 152 468 2.1E-24 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 130 9.1E-23 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 Gene3D G3DSA:3.50.50.60 283 386 1.4E-5 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1397 e3cc78dabf7b6260dc232a8e0bd7e191 488 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 5 486 1.0E-169 T 14-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 Thimo_2950 b5678cc437803e90744f563e3dcdc5ef 554 Gene3D G3DSA:1.20.120.1310 78 181 7.1E-35 T 14-10-2018 Thimo_2950 b5678cc437803e90744f563e3dcdc5ef 554 TIGRFAM TIGR02701 shell_carb_anhy: carboxysome shell carbonic anhydrase 88 531 8.8E-191 T 14-10-2018 IPR014074 Carboxysome shell carbonic anhydrase Thimo_2950 b5678cc437803e90744f563e3dcdc5ef 554 Gene3D G3DSA:3.30.1330.140 428 544 6.5E-49 T 14-10-2018 Thimo_2950 b5678cc437803e90744f563e3dcdc5ef 554 Pfam PF08936 Carboxysome Shell Carbonic Anhydrase 88 541 3.7E-221 T 14-10-2018 IPR014074 Carboxysome shell carbonic anhydrase Thimo_3405 337a742a48fc84132cdb24a11895107d 328 Gene3D G3DSA:3.90.1150.10 22 299 1.7E-48 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_3405 337a742a48fc84132cdb24a11895107d 328 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 4 322 3.8E-110 T 14-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 Thimo_3405 337a742a48fc84132cdb24a11895107d 328 Gene3D G3DSA:3.40.640.10 34 237 1.7E-48 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_3405 337a742a48fc84132cdb24a11895107d 328 Pfam PF00155 Aminotransferase class I and II 67 317 8.3E-30 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Thimo_3405 337a742a48fc84132cdb24a11895107d 328 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 189 202 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Thimo_3405 337a742a48fc84132cdb24a11895107d 328 SUPERFAMILY SSF53383 3 323 6.97E-55 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2645 711401a68433d2f075057d4ad25e42b9 216 Pfam PF05036 Sporulation related domain 139 212 1.3E-15 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 Thimo_2645 711401a68433d2f075057d4ad25e42b9 216 SUPERFAMILY SSF110997 139 214 2.09E-14 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Thimo_2645 711401a68433d2f075057d4ad25e42b9 216 Gene3D G3DSA:3.30.70.1070 140 215 1.1E-8 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 Gene3D G3DSA:2.30.22.10 151 207 5.8E-25 T 14-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PRINTS PR00773 GrpE protein signature 159 174 3.3E-21 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PRINTS PR00773 GrpE protein signature 186 205 3.3E-21 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PRINTS PR00773 GrpE protein signature 104 119 3.3E-21 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 PRINTS PR00773 GrpE protein signature 76 92 3.3E-21 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 SUPERFAMILY SSF51064 152 208 3.79E-19 T 14-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 SUPERFAMILY SSF58014 55 151 3.27E-21 T 14-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 Pfam PF01025 GrpE 49 207 5.0E-47 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 Hamap MF_01151 Protein GrpE [grpE]. 3 207 19.176 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 Gene3D G3DSA:3.90.20.20 47 150 3.5E-22 T 14-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Thimo_2537 8310a22a9471a0e77d9e2cdb58ff5fdb 210 ProSitePatterns PS01071 grpE protein signature. 162 205 - T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Thimo_2429 5d6022c00c0763d8e619a0f94c357622 135 Gene3D G3DSA:1.10.10.10 1 38 7.7E-13 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2429 5d6022c00c0763d8e619a0f94c357622 135 Gene3D G3DSA:1.10.10.10 41 82 1.4E-12 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2429 5d6022c00c0763d8e619a0f94c357622 135 Gene3D G3DSA:1.10.10.10 86 133 7.7E-12 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2429 5d6022c00c0763d8e619a0f94c357622 135 Pfam PF02631 RecX family 16 131 5.3E-26 T 14-10-2018 IPR003783 Regulatory protein RecX GO:0006282 Thimo_3003 ff2a0a044a815b347e0e1a2fb6cea0f9 483 PIRSF PIRSF000163 1 479 1.3E-122 T 14-10-2018 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3003 ff2a0a044a815b347e0e1a2fb6cea0f9 483 Gene3D G3DSA:3.40.50.1980 274 417 3.8E-5 T 14-10-2018 Thimo_3003 ff2a0a044a815b347e0e1a2fb6cea0f9 483 Gene3D G3DSA:3.40.50.1980 139 252 1.2E-23 T 14-10-2018 Thimo_3003 ff2a0a044a815b347e0e1a2fb6cea0f9 483 SUPERFAMILY SSF53807 8 404 1.28E-71 T 14-10-2018 Thimo_3003 ff2a0a044a815b347e0e1a2fb6cea0f9 483 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 12 392 1.3E-35 T 14-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Thimo_3003 ff2a0a044a815b347e0e1a2fb6cea0f9 483 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 422 474 1.7E-12 T 14-10-2018 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3003 ff2a0a044a815b347e0e1a2fb6cea0f9 483 TIGRFAM TIGR02014 BchZ: chlorophyllide reductase subunit Z 2 469 8.6E-233 T 14-10-2018 IPR010244 Chlorophyllide reductase subunit Z GO:0016730|GO:0030494|GO:0055114 KEGG: 00860+1.3.7.15|MetaCyc: PWY-5526 Thimo_2551 d333af6f9ee9a04f9f25541bb4b4540c 361 SUPERFAMILY SSF143631 34 338 3.14E-56 T 14-10-2018 IPR003374 ApbE-like superfamily Thimo_2551 d333af6f9ee9a04f9f25541bb4b4540c 361 PIRSF PIRSF006268 8 343 4.5E-55 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Thimo_2551 d333af6f9ee9a04f9f25541bb4b4540c 361 Pfam PF02424 ApbE family 51 313 8.3E-54 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Thimo_2551 d333af6f9ee9a04f9f25541bb4b4540c 361 Gene3D G3DSA:3.10.520.20 28 346 2.1E-63 T 14-10-2018 Thimo_3051 a1f411506d37d87879cfa66ed7342f60 214 SUPERFAMILY SSF143447 18 200 1.96E-52 T 14-10-2018 IPR036071 AMMECR1 domain superfamily Thimo_3051 a1f411506d37d87879cfa66ed7342f60 214 Gene3D G3DSA:3.30.1490.150 126 198 6.6E-50 T 14-10-2018 Thimo_3051 a1f411506d37d87879cfa66ed7342f60 214 Gene3D G3DSA:3.30.700.20 24 199 6.6E-50 T 14-10-2018 IPR027485 AMMECR1, N-terminal Thimo_3051 a1f411506d37d87879cfa66ed7342f60 214 TIGRFAM TIGR00296 TIGR00296: uncharacterized protein, PH0010 family 48 199 7.6E-33 T 14-10-2018 IPR023473 AMMECR1 Thimo_3051 a1f411506d37d87879cfa66ed7342f60 214 TIGRFAM TIGR04335 AmmeMemoSam_A: AmmeMemoRadiSam system protein A 24 198 2.0E-58 T 14-10-2018 IPR027623 AmmeMemoRadiSam system protein A Thimo_3051 a1f411506d37d87879cfa66ed7342f60 214 Pfam PF01871 AMMECR1 32 197 5.4E-44 T 14-10-2018 IPR002733 AMMECR1 domain Thimo_1926 df759116aa029de0545521a70695fd9a 429 Pfam PF03471 Transporter associated domain 343 414 1.8E-11 T 14-10-2018 IPR005170 Transporter-associated domain Thimo_1926 df759116aa029de0545521a70695fd9a 429 SUPERFAMILY SSF54631 192 329 1.46E-28 T 14-10-2018 Thimo_1926 df759116aa029de0545521a70695fd9a 429 Pfam PF00571 CBS domain 205 261 1.6E-4 T 14-10-2018 IPR000644 CBS domain Thimo_1926 df759116aa029de0545521a70695fd9a 429 Pfam PF00571 CBS domain 295 326 3.0E-4 T 14-10-2018 IPR000644 CBS domain Thimo_1926 df759116aa029de0545521a70695fd9a 429 SUPERFAMILY SSF56176 338 415 2.73E-17 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Thimo_1926 df759116aa029de0545521a70695fd9a 429 SMART SM01091 341 418 2.3E-15 T 14-10-2018 IPR005170 Transporter-associated domain Thimo_1926 df759116aa029de0545521a70695fd9a 429 Pfam PF01595 Domain of unknown function DUF21 13 181 6.7E-46 T 14-10-2018 IPR002550 CNNM, transmembrane domain Thimo_1926 df759116aa029de0545521a70695fd9a 429 Gene3D G3DSA:3.30.465.10 343 417 1.9E-23 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_1926 df759116aa029de0545521a70695fd9a 429 Gene3D G3DSA:3.10.580.10 186 342 3.5E-42 T 14-10-2018 Thimo_1683 604aa1300d0ab3f831db78d7449aa86f 176 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 10 170 1.1E-81 T 14-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 Thimo_1683 604aa1300d0ab3f831db78d7449aa86f 176 PIRSF PIRSF006443 1 168 1.8E-63 T 14-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 Thimo_1683 604aa1300d0ab3f831db78d7449aa86f 176 Pfam PF00994 Probable molybdopterin binding domain 16 159 5.9E-34 T 14-10-2018 IPR001453 MoaB/Mog domain Thimo_1683 604aa1300d0ab3f831db78d7449aa86f 176 SUPERFAMILY SSF53218 10 170 1.44E-47 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Thimo_1683 604aa1300d0ab3f831db78d7449aa86f 176 Gene3D G3DSA:3.40.980.10 5 173 1.1E-52 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Thimo_1683 604aa1300d0ab3f831db78d7449aa86f 176 SMART SM00852 16 160 2.1E-32 T 14-10-2018 IPR001453 MoaB/Mog domain Thimo_1683 604aa1300d0ab3f831db78d7449aa86f 176 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 15 153 9.4E-35 T 14-10-2018 IPR001453 MoaB/Mog domain Thimo_3573 39b42ba64a7ad1de9ad2cad9ee919cb6 603 SMART SM00382 383 569 9.1E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3573 39b42ba64a7ad1de9ad2cad9ee919cb6 603 ProSitePatterns PS00211 ABC transporters family signature. 495 509 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_3573 39b42ba64a7ad1de9ad2cad9ee919cb6 603 SUPERFAMILY SSF52540 348 584 1.33E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3573 39b42ba64a7ad1de9ad2cad9ee919cb6 603 Pfam PF00005 ABC transporter 376 523 5.8E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_3573 39b42ba64a7ad1de9ad2cad9ee919cb6 603 SUPERFAMILY SSF90123 11 507 1.83E-32 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_3573 39b42ba64a7ad1de9ad2cad9ee919cb6 603 Gene3D G3DSA:3.40.50.300 351 601 3.5E-80 T 14-10-2018 Thimo_3573 39b42ba64a7ad1de9ad2cad9ee919cb6 603 Gene3D G3DSA:1.20.1560.10 2 330 3.6E-22 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_1202 2a52519a06d7f06c4baa3fdabebe848d 141 Pfam PF06146 Phosphate-starvation-inducible E 49 114 2.6E-10 T 14-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 566 3.5E-246 T 14-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 PIRSF PIRSF001535 1 573 1.8E-270 T 14-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 Gene3D G3DSA:3.90.960.10 240 389 8.1E-237 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 SUPERFAMILY SSF55826 218 390 1.83E-30 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 Gene3D G3DSA:3.40.50.800 4 554 8.1E-237 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 SUPERFAMILY SSF55681 10 478 2.58E-105 T 14-10-2018 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 SUPERFAMILY SSF52954 464 570 1.59E-30 T 14-10-2018 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 Pfam PF03129 Anticodon binding domain 476 568 9.5E-18 T 14-10-2018 IPR004154 Anticodon-binding Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 1.0E-46 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 42.503 T 14-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 6.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 6.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 6.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 6.9E-19 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 Pfam PF04073 Aminoacyl-tRNA editing domain 257 378 5.6E-23 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Thimo_1924 39571c4f42fbc55dc16f6193ba6799d9 573 Gene3D G3DSA:3.30.930.10 11 465 8.1E-237 T 14-10-2018 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 Gene3D G3DSA:1.10.4030.10 35 162 2.4E-36 T 14-10-2018 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 Pfam PF09312 SurA N-terminal domain 39 156 8.1E-40 T 14-10-2018 IPR015391 SurA N-terminal Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 Hamap MF_01183 Chaperone SurA [surA]. 24 440 34.232 T 14-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 Gene3D G3DSA:3.10.50.40 296 397 2.1E-81 T 14-10-2018 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 SUPERFAMILY SSF54534 187 289 9.81E-29 T 14-10-2018 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 Pfam PF00639 PPIC-type PPIASE domain 192 284 5.4E-24 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 Gene3D G3DSA:3.10.50.40 189 399 2.1E-81 T 14-10-2018 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 SUPERFAMILY SSF54534 296 397 3.73E-30 T 14-10-2018 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 333 354 - T 14-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 Pfam PF13616 PPIC-type PPIASE domain 297 395 1.3E-25 T 14-10-2018 Thimo_3266 87668b6c406f77ad51600937b94bc7a3 445 SUPERFAMILY SSF109998 40 216 3.73E-44 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily Thimo_3625 078fbcee1412076c7637afd5ac4398b7 196 PIRSF PIRSF004553 12 191 6.8E-47 T 14-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Thimo_3625 078fbcee1412076c7637afd5ac4398b7 196 SUPERFAMILY SSF53335 13 184 1.97E-44 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3625 078fbcee1412076c7637afd5ac4398b7 196 Pfam PF03602 Conserved hypothetical protein 95 13 185 8.4E-50 T 14-10-2018 Thimo_3625 078fbcee1412076c7637afd5ac4398b7 196 Gene3D G3DSA:3.40.50.150 2 193 8.0E-55 T 14-10-2018 Thimo_3625 078fbcee1412076c7637afd5ac4398b7 196 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 125 131 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Thimo_3625 078fbcee1412076c7637afd5ac4398b7 196 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 6 187 9.2E-46 T 14-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Thimo_0598 2e47bc34066096ab4382bd6d76e895a8 478 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 469 3.9E-143 T 14-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 Thimo_0598 2e47bc34066096ab4382bd6d76e895a8 478 Pfam PF00361 Proton-conducting membrane transporter 125 419 7.8E-78 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0598 2e47bc34066096ab4382bd6d76e895a8 478 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 470 18.275 T 14-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 Thimo_0598 2e47bc34066096ab4382bd6d76e895a8 478 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 413 432 3.4E-10 T 14-10-2018 Thimo_0598 2e47bc34066096ab4382bd6d76e895a8 478 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 73 98 3.4E-10 T 14-10-2018 Thimo_0598 2e47bc34066096ab4382bd6d76e895a8 478 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 3.4E-10 T 14-10-2018 Thimo_1374 87a41db5a6d20fe74b1b0c9e68f75ecf 110 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 19 109 1.3E-28 T 14-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Thimo_1374 87a41db5a6d20fe74b1b0c9e68f75ecf 110 Gene3D G3DSA:3.30.1360.20 18 110 5.3E-31 T 14-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Thimo_1374 87a41db5a6d20fe74b1b0c9e68f75ecf 110 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 16 110 20.152 T 14-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Thimo_1374 87a41db5a6d20fe74b1b0c9e68f75ecf 110 SUPERFAMILY SSF55248 16 110 6.67E-32 T 14-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 12 181 30.169 T 14-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 Gene3D G3DSA:3.10.20.80 13 86 4.1E-31 T 14-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 95 179 9.3E-36 T 14-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 SUPERFAMILY SSF54364 16 89 1.57E-28 T 14-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 ProSitePatterns PS00938 Initiation factor 3 signature. 69 82 - T 14-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 18 181 7.1E-66 T 14-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 SUPERFAMILY SSF55200 95 180 9.81E-32 T 14-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 Gene3D G3DSA:3.30.110.10 87 181 8.9E-37 T 14-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Thimo_2827 449e0a3d1aa496b4da5a3f30a20595c8 181 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 18 87 1.7E-29 T 14-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Thimo_0799 a526c527bc37288b758c259b12dc203c 69 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 13 57 3.2E-10 T 14-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 SUPERFAMILY SSF55785 113 226 9.84E-8 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 Gene3D G3DSA:1.10.287.130 230 300 2.2E-22 T 14-10-2018 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 453 2.7E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 409 2.7E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 2.7E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 2.7E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 453 3.8E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 125 452 8.7E-122 T 14-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 Pfam PF11808 Domain of unknown function (DUF3329) 41 118 2.3E-13 T 14-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 Gene3D G3DSA:3.30.565.10 307 457 4.9E-34 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 SUPERFAMILY SSF55874 289 452 2.62E-39 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 298 9.4E-19 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 SMART SM00387 344 456 1.4E-32 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 SMART SM00388 234 300 5.5E-22 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 Gene3D G3DSA:3.30.450.20 109 229 1.2E-6 T 14-10-2018 Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 SMART SM00091 125 191 0.0015 T 14-10-2018 IPR000014 PAS domain Thimo_3296 6bc6e43d9f22d0cdd4a6f26d13be0f07 486 SUPERFAMILY SSF47384 221 298 1.9E-19 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_2539 64adcc44e496134f69853b60438d2c0e 297 Hamap MF_00361 NAD kinase [nadK]. 5 287 32.769 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Thimo_2539 64adcc44e496134f69853b60438d2c0e 297 Gene3D G3DSA:3.40.50.10330 23 287 1.4E-92 T 14-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Thimo_2539 64adcc44e496134f69853b60438d2c0e 297 Pfam PF01513 ATP-NAD kinase 60 270 1.3E-56 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Thimo_2539 64adcc44e496134f69853b60438d2c0e 297 SUPERFAMILY SSF111331 8 288 4.97E-81 T 14-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Thimo_2539 64adcc44e496134f69853b60438d2c0e 297 Gene3D G3DSA:2.60.200.30 128 264 1.4E-92 T 14-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 Pfam PF13499 EF-hand domain pair 120 184 2.0E-7 T 14-10-2018 IPR002048 EF-hand domain GO:0005509 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 Gene3D G3DSA:1.10.238.10 118 190 7.5E-12 T 14-10-2018 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 Gene3D G3DSA:1.10.238.10 32 107 1.5E-11 T 14-10-2018 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 38 50 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 126 138 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 SUPERFAMILY SSF47473 34 184 1.05E-17 T 14-10-2018 IPR011992 EF-hand domain pair Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 Pfam PF13202 EF hand 34 51 0.0035 T 14-10-2018 IPR002048 EF-hand domain GO:0005509 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 Pfam PF13202 EF hand 76 92 2.6E-4 T 14-10-2018 IPR002048 EF-hand domain GO:0005509 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 81 93 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 169 181 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 SMART SM00054 117 145 20.0 T 14-10-2018 IPR002048 EF-hand domain GO:0005509 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 SMART SM00054 34 57 14.0 T 14-10-2018 IPR002048 EF-hand domain GO:0005509 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 SMART SM00054 72 100 16.0 T 14-10-2018 IPR002048 EF-hand domain GO:0005509 Thimo_1729 41752ffaff98ea0a197a6add3062c554 196 SMART SM00054 160 188 11.0 T 14-10-2018 IPR002048 EF-hand domain GO:0005509 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 SMART SM00382 140 403 6.8E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 Gene3D G3DSA:3.40.50.300 74 342 4.9E-114 T 14-10-2018 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 SUPERFAMILY SSF50615 2 73 6.54E-24 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 9.6E-21 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 SUPERFAMILY SSF47917 343 458 2.33E-53 T 14-10-2018 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 SUPERFAMILY SSF52540 75 345 5.43E-93 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 458 56.551 T 14-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 Gene3D G3DSA:1.10.1140.10 343 458 6.9E-60 T 14-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 331 340 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 Gene3D G3DSA:2.40.10.170 1 73 1.3E-28 T 14-10-2018 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 458 3.7E-252 T 14-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 Thimo_1171 54e4277d4c2b85f7927ad3bdc8b45da9 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 340 1.8E-66 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2744 67b86e07b30a2b0bca5267c18923916b 278 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 199 7.5E-18 T 14-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Thimo_2744 67b86e07b30a2b0bca5267c18923916b 278 SUPERFAMILY SSF56300 1 226 7.08E-36 T 14-10-2018 Thimo_2744 67b86e07b30a2b0bca5267c18923916b 278 Gene3D G3DSA:3.60.21.10 1 230 1.5E-38 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Thimo_2744 67b86e07b30a2b0bca5267c18923916b 278 PIRSF PIRSF000883 1 230 3.5E-34 T 14-10-2018 IPR011152 Phosphoesterase MJ0912 Thimo_3512 c6d754ecfb42a73b166afbe4d91cf266 269 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 8 268 41.107 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Thimo_3512 c6d754ecfb42a73b166afbe4d91cf266 269 PIRSF PIRSF000388 1 269 6.7E-95 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Thimo_3512 c6d754ecfb42a73b166afbe4d91cf266 269 SUPERFAMILY SSF51621 9 267 2.56E-98 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_3512 c6d754ecfb42a73b166afbe4d91cf266 269 Gene3D G3DSA:3.20.20.60 6 269 6.4E-105 T 14-10-2018 Thimo_3512 c6d754ecfb42a73b166afbe4d91cf266 269 Pfam PF02548 Ketopantoate hydroxymethyltransferase 9 263 3.4E-106 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Thimo_3512 c6d754ecfb42a73b166afbe4d91cf266 269 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 10 267 2.2E-102 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Thimo_2786 a61ac6e89bc53f2102e1bed8c85b799c 484 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 9 474 94.929 T 14-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Thimo_2786 a61ac6e89bc53f2102e1bed8c85b799c 484 ProSitePatterns PS00571 Amidases signature. 149 180 - T 14-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 Thimo_2786 a61ac6e89bc53f2102e1bed8c85b799c 484 Gene3D G3DSA:3.90.1300.10 1 483 2.4E-210 T 14-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Thimo_2786 a61ac6e89bc53f2102e1bed8c85b799c 484 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 13 474 2.8E-182 T 14-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Thimo_2786 a61ac6e89bc53f2102e1bed8c85b799c 484 SUPERFAMILY SSF75304 2 480 7.06E-171 T 14-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Thimo_2786 a61ac6e89bc53f2102e1bed8c85b799c 484 Pfam PF01425 Amidase 22 463 7.8E-164 T 14-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Thimo_2642 23920f478840d2a91317f1eaae1d75b2 394 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 391 1.1E-135 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Thimo_2642 23920f478840d2a91317f1eaae1d75b2 394 PIRSF PIRSF001434 2 394 5.2E-130 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Thimo_2642 23920f478840d2a91317f1eaae1d75b2 394 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 10 391 1.9E-169 T 14-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 Thimo_2642 23920f478840d2a91317f1eaae1d75b2 394 Gene3D G3DSA:3.90.1150.10 261 394 2.6E-47 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2642 23920f478840d2a91317f1eaae1d75b2 394 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 201 215 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Thimo_2642 23920f478840d2a91317f1eaae1d75b2 394 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 11 392 53.956 T 14-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 Thimo_2642 23920f478840d2a91317f1eaae1d75b2 394 SUPERFAMILY SSF53383 28 392 1.6E-116 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2642 23920f478840d2a91317f1eaae1d75b2 394 Gene3D G3DSA:3.40.640.10 5 257 3.4E-87 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF10410 DnaB-helicase binding domain of primase 366 419 8.9E-10 T 14-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:1.10.860.10 432 575 2.1E-27 T 14-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 SUPERFAMILY SSF57783 4 99 5.61E-37 T 14-10-2018 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 TIGRFAM TIGR01391 dnaG: DNA primase 4 414 1.3E-144 T 14-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF13155 Toprim-like 260 345 4.7E-16 T 14-10-2018 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:3.90.580.10 1 101 6.8E-40 T 14-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:1.20.50.20 365 420 1.2E-10 T 14-10-2018 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF01807 CHC2 zinc finger 6 100 9.5E-40 T 14-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Hamap MF_00974 DNA primase [dnaG]. 4 573 29.149 T 14-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 SUPERFAMILY SSF117023 442 570 1.12E-20 T 14-10-2018 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 SMART SM00766 444 572 1.0E-11 T 14-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF08278 DNA primase DnaG DnaB-binding 445 570 4.3E-21 T 14-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 SUPERFAMILY SSF56731 112 419 1.96E-106 T 14-10-2018 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 SMART SM00400 36 90 5.5E-33 T 14-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 SMART SM00493 256 327 9.5E-21 T 14-10-2018 IPR006171 TOPRIM domain Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Pfam PF08275 DNA primase catalytic core, N-terminal domain 123 248 7.2E-44 T 14-10-2018 IPR013264 DNA primase, catalytic core, N-terminal Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:3.90.980.10 107 237 8.0E-47 T 14-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily Thimo_0553 70e876e086a1e0ef1472d73a12a96a01 576 Gene3D G3DSA:3.40.1360.10 238 363 7.8E-39 T 14-10-2018 Thimo_2985 9649624a951194d67036fdb32768d527 662 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 1.2E-13 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Thimo_2985 9649624a951194d67036fdb32768d527 662 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 575 640 3.7E-19 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Thimo_2985 9649624a951194d67036fdb32768d527 662 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 319 2.7E-20 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Thimo_2985 9649624a951194d67036fdb32768d527 662 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 573 659 9.0E-25 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Thimo_2985 9649624a951194d67036fdb32768d527 662 Pfam PF00005 ABC transporter 373 524 1.6E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2985 9649624a951194d67036fdb32768d527 662 SMART SM00382 381 573 1.2E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2985 9649624a951194d67036fdb32768d527 662 SMART SM00382 34 234 1.0E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2985 9649624a951194d67036fdb32768d527 662 Gene3D G3DSA:3.40.50.300 343 662 2.7E-100 T 14-10-2018 Thimo_2985 9649624a951194d67036fdb32768d527 662 Gene3D G3DSA:3.40.50.300 3 331 2.2E-94 T 14-10-2018 Thimo_2985 9649624a951194d67036fdb32768d527 662 ProSitePatterns PS00211 ABC transporters family signature. 496 510 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2985 9649624a951194d67036fdb32768d527 662 SUPERFAMILY SSF52540 345 595 1.67E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2985 9649624a951194d67036fdb32768d527 662 SUPERFAMILY SSF52540 5 255 1.55E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2985 9649624a951194d67036fdb32768d527 662 Pfam PF00005 ABC transporter 26 184 6.7E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2985 9649624a951194d67036fdb32768d527 662 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_3531 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 89 1.0E-5 T 14-10-2018 Thimo_3531 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_3531 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.6E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_3531 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_1420 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 89 1.0E-5 T 14-10-2018 Thimo_1420 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_1420 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.6E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_1420 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2198 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 89 1.0E-5 T 14-10-2018 Thimo_2198 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2198 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.6E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2198 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2314 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 89 1.0E-5 T 14-10-2018 Thimo_2314 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2314 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.6E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2314 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0371 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 89 1.0E-5 T 14-10-2018 Thimo_0371 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_0371 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.6E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_0371 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2246 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 89 1.0E-5 T 14-10-2018 Thimo_2246 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2246 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.6E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2246 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0369 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 89 1.0E-5 T 14-10-2018 Thimo_0369 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_0369 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.6E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_0369 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0021 f29155f227b82c096af130884fbada9d 165 Gene3D G3DSA:1.10.10.60 5 89 1.0E-5 T 14-10-2018 Thimo_0021 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 60 135 2.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_0021 f29155f227b82c096af130884fbada9d 165 Pfam PF01527 Transposase 2 55 7.6E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_0021 f29155f227b82c096af130884fbada9d 165 SUPERFAMILY SSF46689 2 67 3.05E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0473 de329ebecdc8112b1ea8f31a562ab96b 567 SUPERFAMILY SSF52317 334 527 1.9E-34 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0473 de329ebecdc8112b1ea8f31a562ab96b 567 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 333 519 5.7E-54 T 14-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Thimo_0473 de329ebecdc8112b1ea8f31a562ab96b 567 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 72 561 3.2E-112 T 14-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Thimo_0473 de329ebecdc8112b1ea8f31a562ab96b 567 Gene3D G3DSA:3.40.50.880 338 475 1.6E-15 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0473 de329ebecdc8112b1ea8f31a562ab96b 567 Hamap MF_00028 Cobyric acid synthase [cobQ]. 67 567 177.036 T 14-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Thimo_0473 de329ebecdc8112b1ea8f31a562ab96b 567 Pfam PF13500 AAA domain 72 282 2.2E-12 T 14-10-2018 Thimo_0473 de329ebecdc8112b1ea8f31a562ab96b 567 Gene3D G3DSA:3.40.50.300 68 311 4.1E-45 T 14-10-2018 Thimo_0473 de329ebecdc8112b1ea8f31a562ab96b 567 SUPERFAMILY SSF52540 71 307 6.95E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0419 680a22fefcd95e59bcada5444466d6cc 206 Pfam PF12804 MobA-like NTP transferase domain 13 168 1.9E-34 T 14-10-2018 IPR025877 MobA-like NTP transferase Thimo_0419 680a22fefcd95e59bcada5444466d6cc 206 Gene3D G3DSA:3.90.550.10 8 199 8.7E-56 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0419 680a22fefcd95e59bcada5444466d6cc 206 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 11 193 1.5E-66 T 14-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 Thimo_0419 680a22fefcd95e59bcada5444466d6cc 206 SUPERFAMILY SSF53448 11 192 1.1E-33 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0419 680a22fefcd95e59bcada5444466d6cc 206 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 9 196 28.253 T 14-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 Thimo_0849 3e0437ec911a130adf0fd52498bf3b1e 404 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 298 7.8E-13 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_0849 3e0437ec911a130adf0fd52498bf3b1e 404 Gene3D G3DSA:2.40.420.20 309 377 3.9E-110 T 14-10-2018 Thimo_0849 3e0437ec911a130adf0fd52498bf3b1e 404 Gene3D G3DSA:2.40.50.100 68 212 3.9E-110 T 14-10-2018 Thimo_0849 3e0437ec911a130adf0fd52498bf3b1e 404 Gene3D G3DSA:2.40.30.170 55 308 3.9E-110 T 14-10-2018 Thimo_0849 3e0437ec911a130adf0fd52498bf3b1e 404 Gene3D G3DSA:1.10.287.470 103 176 3.9E-110 T 14-10-2018 Thimo_0849 3e0437ec911a130adf0fd52498bf3b1e 404 SUPERFAMILY SSF111369 55 305 5.49E-86 T 14-10-2018 Thimo_0849 3e0437ec911a130adf0fd52498bf3b1e 404 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 380 1.4E-83 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1086 493af31e9085e121e39465d65fea4269 457 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Thimo_1086 493af31e9085e121e39465d65fea4269 457 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 4 457 1.8E-170 T 14-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 Thimo_1086 493af31e9085e121e39465d65fea4269 457 SUPERFAMILY SSF47005 153 198 9.02E-14 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Thimo_1086 493af31e9085e121e39465d65fea4269 457 Pfam PF02817 e3 binding domain 159 194 2.4E-17 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Thimo_1086 493af31e9085e121e39465d65fea4269 457 Gene3D G3DSA:4.10.320.10 160 203 2.5E-21 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Thimo_1086 493af31e9085e121e39465d65fea4269 457 SUPERFAMILY SSF52777 217 457 3.11E-78 T 14-10-2018 Thimo_1086 493af31e9085e121e39465d65fea4269 457 Pfam PF00364 Biotin-requiring enzyme 6 76 1.1E-19 T 14-10-2018 IPR000089 Biotin/lipoyl attachment Thimo_1086 493af31e9085e121e39465d65fea4269 457 SUPERFAMILY SSF51230 4 96 4.45E-22 T 14-10-2018 IPR011053 Single hybrid motif Thimo_1086 493af31e9085e121e39465d65fea4269 457 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 230 457 7.1E-75 T 14-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Thimo_1086 493af31e9085e121e39465d65fea4269 457 Gene3D G3DSA:2.40.50.100 4 81 7.7E-21 T 14-10-2018 Thimo_1086 493af31e9085e121e39465d65fea4269 457 Gene3D G3DSA:3.30.559.10 215 457 1.1E-91 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Thimo_3488 9028040207f82d9d35dbff1e3c061dbc 217 SUPERFAMILY SSF53335 8 179 9.62E-19 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3488 9028040207f82d9d35dbff1e3c061dbc 217 Pfam PF13649 Methyltransferase domain 46 142 1.1E-6 T 14-10-2018 Thimo_3488 9028040207f82d9d35dbff1e3c061dbc 217 Gene3D G3DSA:3.40.50.150 5 192 1.9E-16 T 14-10-2018 Thimo_0440 36dc4541dadc59d115096b20e7c24628 296 Pfam PF01012 Electron transfer flavoprotein domain 27 198 8.0E-45 T 14-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Thimo_0440 36dc4541dadc59d115096b20e7c24628 296 SMART SM00893 26 211 8.2E-52 T 14-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Thimo_0440 36dc4541dadc59d115096b20e7c24628 296 SUPERFAMILY SSF52402 6 289 6.77E-61 T 14-10-2018 Thimo_0440 36dc4541dadc59d115096b20e7c24628 296 PIRSF PIRSF000090 3 295 7.7E-70 T 14-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 SMART SM00642 180 591 1.5E-8 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 Gene3D G3DSA:3.20.20.80 163 605 3.1E-179 T 14-10-2018 Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 Pfam PF00128 Alpha amylase, catalytic domain 213 299 4.6E-9 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 SUPERFAMILY SSF51011 612 719 2.45E-25 T 14-10-2018 Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 SUPERFAMILY SSF51445 165 602 2.68E-132 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 Gene3D G3DSA:2.60.40.10 17 162 1.4E-52 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 SUPERFAMILY SSF81296 27 173 2.1E-49 T 14-10-2018 IPR014756 Immunoglobulin E-set Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 27 719 0.0 T 14-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 31 119 3.5E-20 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Thimo_1722 5dd4b0615dc15603a6458ac53ee2c41d 744 Gene3D G3DSA:2.60.40.1180 611 721 3.9E-17 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta Thimo_2236 3fe8c3a14f4ec99761c919a2bb25cd48 427 Gene3D G3DSA:3.90.760.10 354 427 2.5E-23 T 14-10-2018 IPR037092 Flavocytochrome c sulphide dehydrogenase, flavin-binding domain superfamily GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 Thimo_2236 3fe8c3a14f4ec99761c919a2bb25cd48 427 SUPERFAMILY SSF51905 29 178 8.37E-28 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2236 3fe8c3a14f4ec99761c919a2bb25cd48 427 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 30 338 2.5E-14 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_2236 3fe8c3a14f4ec99761c919a2bb25cd48 427 Gene3D G3DSA:3.50.50.60 30 342 2.2E-112 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2236 3fe8c3a14f4ec99761c919a2bb25cd48 427 SUPERFAMILY SSF51905 141 281 1.6E-37 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2236 3fe8c3a14f4ec99761c919a2bb25cd48 427 SUPERFAMILY SSF55424 355 427 3.84E-18 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Thimo_2236 3fe8c3a14f4ec99761c919a2bb25cd48 427 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 356 426 2.0E-21 T 14-10-2018 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 Thimo_2236 3fe8c3a14f4ec99761c919a2bb25cd48 427 Gene3D G3DSA:3.50.50.60 143 281 2.2E-112 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 Gene3D G3DSA:3.30.565.10 308 459 1.8E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 SUPERFAMILY SSF158472 182 233 9.29E-8 T 14-10-2018 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 1.1E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 398 1.1E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 412 1.1E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 SMART SM00387 347 456 4.6E-38 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 302 7.5E-7 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 SMART SM00304 182 235 2.7E-9 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 453 1.3E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 SUPERFAMILY SSF47384 219 303 8.83E-14 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 SUPERFAMILY SSF55874 291 454 1.14E-43 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 SMART SM00388 236 302 1.6E-10 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 Pfam PF00672 HAMP domain 182 231 6.2E-8 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_3557 9c5bad9811b880be58e9eba9c2241d2e 468 Gene3D G3DSA:1.10.287.130 186 302 1.9E-20 T 14-10-2018 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 365 439 2.8E-12 T 14-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 Gene3D G3DSA:3.40.1380.20 337 429 7.4E-150 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 SUPERFAMILY SSF50800 74 168 6.11E-24 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 Gene3D G3DSA:2.40.33.10 74 170 7.4E-150 T 14-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 SUPERFAMILY SSF52935 324 473 5.04E-19 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 2.6E-63 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 188 202 2.6E-63 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 295 313 2.6E-63 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 314 330 2.6E-63 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 270 294 2.6E-63 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 218 244 2.6E-63 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 PRINTS PR01050 Pyruvate kinase family signature 245 269 2.6E-63 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 SUPERFAMILY SSF51621 5 339 8.72E-89 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 337 5.4E-114 T 14-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 Gene3D G3DSA:3.20.20.60 7 336 7.4E-150 T 14-10-2018 Thimo_2891 19d0d28bfeff214c34eb49d93300c8da 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 449 4.8E-144 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Thimo_3100 9d27ed17e3b86258c04eb573ba9519f9 187 SUPERFAMILY SSF81342 5 176 2.35E-24 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_3100 9d27ed17e3b86258c04eb573ba9519f9 187 Gene3D G3DSA:1.20.950.20 4 88 2.1E-6 T 14-10-2018 Thimo_3100 9d27ed17e3b86258c04eb573ba9519f9 187 Pfam PF01292 Prokaryotic cytochrome b561 10 178 1.3E-22 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_0150 555d3586b94e56b7a6481a9fc5873326 512 SUPERFAMILY SSF46548 69 172 5.41E-14 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0150 555d3586b94e56b7a6481a9fc5873326 512 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0150 555d3586b94e56b7a6481a9fc5873326 512 Pfam PF13183 4Fe-4S dicluster domain 73 159 4.4E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0150 555d3586b94e56b7a6481a9fc5873326 512 Pfam PF02754 Cysteine-rich domain 368 467 2.5E-4 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_2732 141a7f14ce37ac1dcff189030ec30c21 903 SUPERFAMILY SSF55166 755 867 5.89E-10 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_2732 141a7f14ce37ac1dcff189030ec30c21 903 TIGRFAM TIGR04096 dnd_rel_methyl: DNA phosphorothioation-associated putative methyltransferase 195 713 1.6E-141 T 14-10-2018 IPR024019 Conserved hypothetical protein CHP04096 Thimo_3748 48cd73a8241e3abb9a57e6e0062f5ab9 239 Pfam PF01051 Initiator Replication protein 14 229 1.1E-54 T 14-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 Thimo_3748 48cd73a8241e3abb9a57e6e0062f5ab9 239 Gene3D G3DSA:1.10.10.10 13 142 5.9E-45 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3748 48cd73a8241e3abb9a57e6e0062f5ab9 239 SUPERFAMILY SSF46785 134 233 4.08E-27 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3748 48cd73a8241e3abb9a57e6e0062f5ab9 239 Gene3D G3DSA:1.10.10.10 146 238 3.2E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3748 48cd73a8241e3abb9a57e6e0062f5ab9 239 SUPERFAMILY SSF46785 19 142 1.09E-32 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1058 b388cd054bbea8301f2fa9bd9749b22d 212 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 47 200 8.8E-68 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_1058 b388cd054bbea8301f2fa9bd9749b22d 212 Pfam PF01625 Peptide methionine sulfoxide reductase 48 200 1.5E-67 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_1058 b388cd054bbea8301f2fa9bd9749b22d 212 SUPERFAMILY SSF55068 6 205 1.57E-81 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_1058 b388cd054bbea8301f2fa9bd9749b22d 212 Gene3D G3DSA:3.30.1060.10 6 212 4.5E-92 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_1058 b388cd054bbea8301f2fa9bd9749b22d 212 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 45 206 38.289 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_1820 d992fc499428b323e79db7deda7f9058 251 SUPERFAMILY SSF141371 13 116 9.81E-9 T 14-10-2018 Thimo_1820 d992fc499428b323e79db7deda7f9058 251 Gene3D G3DSA:2.40.10.220 9 129 1.4E-10 T 14-10-2018 Thimo_1820 d992fc499428b323e79db7deda7f9058 251 Pfam PF07238 PilZ domain 14 114 7.2E-12 T 14-10-2018 IPR009875 PilZ domain GO:0035438 Thimo_0193 6616e446112a8f62a3e67bbcc7e23ca0 233 Pfam PF00005 ABC transporter 27 175 4.7E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0193 6616e446112a8f62a3e67bbcc7e23ca0 233 SMART SM00382 36 224 4.0E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0193 6616e446112a8f62a3e67bbcc7e23ca0 233 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0193 6616e446112a8f62a3e67bbcc7e23ca0 233 Gene3D G3DSA:3.40.50.300 5 232 2.0E-66 T 14-10-2018 Thimo_0193 6616e446112a8f62a3e67bbcc7e23ca0 233 SUPERFAMILY SSF52540 7 230 6.21E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0193 6616e446112a8f62a3e67bbcc7e23ca0 233 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 7 226 1.9E-94 T 14-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 Thimo_2002 42dc107bf21a51c4d65f7ef938c2b540 114 Pfam PF01230 HIT domain 12 108 5.1E-30 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Thimo_2002 42dc107bf21a51c4d65f7ef938c2b540 114 PRINTS PR00332 Histidine triad family signature 5 21 1.0E-19 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Thimo_2002 42dc107bf21a51c4d65f7ef938c2b540 114 PRINTS PR00332 Histidine triad family signature 26 44 1.0E-19 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Thimo_2002 42dc107bf21a51c4d65f7ef938c2b540 114 PRINTS PR00332 Histidine triad family signature 94 104 1.0E-19 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Thimo_2002 42dc107bf21a51c4d65f7ef938c2b540 114 SUPERFAMILY SSF54197 1 113 1.19E-37 T 14-10-2018 IPR036265 HIT-like superfamily Thimo_2002 42dc107bf21a51c4d65f7ef938c2b540 114 Gene3D G3DSA:3.30.428.10 1 114 1.4E-38 T 14-10-2018 IPR036265 HIT-like superfamily Thimo_2002 42dc107bf21a51c4d65f7ef938c2b540 114 ProSitePatterns PS00892 HIT domain signature. 87 105 - T 14-10-2018 IPR019808 Histidine triad, conserved site Thimo_0185 c6f4334f1bb2ddb2c70cb57b0440ca31 329 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 322 44.685 T 14-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 Thimo_0185 c6f4334f1bb2ddb2c70cb57b0440ca31 329 SUPERFAMILY SSF51395 10 315 6.04E-81 T 14-10-2018 Thimo_0185 c6f4334f1bb2ddb2c70cb57b0440ca31 329 Gene3D G3DSA:1.10.1200.80 253 319 2.3E-5 T 14-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 Thimo_0185 c6f4334f1bb2ddb2c70cb57b0440ca31 329 Pfam PF01207 Dihydrouridine synthase (Dus) 13 314 1.0E-91 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Thimo_0185 c6f4334f1bb2ddb2c70cb57b0440ca31 329 PIRSF PIRSF006621 1 328 1.2E-95 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Thimo_0185 c6f4334f1bb2ddb2c70cb57b0440ca31 329 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 317 1.8E-110 T 14-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 Thimo_0185 c6f4334f1bb2ddb2c70cb57b0440ca31 329 Gene3D G3DSA:3.20.20.70 7 249 7.1E-73 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0185 c6f4334f1bb2ddb2c70cb57b0440ca31 329 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 14-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Thimo_1812 263c66286f2df91fda2090ec866fae6d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 2.8E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1812 263c66286f2df91fda2090ec866fae6d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 2.8E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1812 263c66286f2df91fda2090ec866fae6d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 2.8E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1812 263c66286f2df91fda2090ec866fae6d 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 2.8E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1812 263c66286f2df91fda2090ec866fae6d 117 Pfam PF01022 Bacterial regulatory protein, arsR family 16 60 2.0E-14 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1812 263c66286f2df91fda2090ec866fae6d 117 SUPERFAMILY SSF46785 5 87 1.96E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1812 263c66286f2df91fda2090ec866fae6d 117 Gene3D G3DSA:1.10.10.10 4 102 2.0E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1812 263c66286f2df91fda2090ec866fae6d 117 SMART SM00418 7 89 1.4E-26 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_0947 0544d47ad5791306c072c03e55b5d4d8 290 PIRSF PIRSF005261 1 280 2.2E-77 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Thimo_0947 0544d47ad5791306c072c03e55b5d4d8 290 SUPERFAMILY SSF64397 5 228 4.58E-68 T 14-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Thimo_0947 0544d47ad5791306c072c03e55b5d4d8 290 Pfam PF01430 Hsp33 protein 5 269 9.5E-85 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Thimo_0947 0544d47ad5791306c072c03e55b5d4d8 290 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 280 29.751 T 14-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Thimo_0947 0544d47ad5791306c072c03e55b5d4d8 290 Gene3D G3DSA:3.55.30.10 1 172 5.6E-59 T 14-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Thimo_0947 0544d47ad5791306c072c03e55b5d4d8 290 Gene3D G3DSA:1.10.287.480 175 221 2.4E-19 T 14-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily Thimo_0947 0544d47ad5791306c072c03e55b5d4d8 290 Gene3D G3DSA:3.90.1280.10 222 280 1.1E-21 T 14-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Thimo_0947 0544d47ad5791306c072c03e55b5d4d8 290 SUPERFAMILY SSF118352 221 277 6.02E-19 T 14-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 SUPERFAMILY SSF48179 177 469 1.99E-119 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 Gene3D G3DSA:1.10.1040.10 181 434 7.5E-100 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 468 4.0E-121 T 14-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 14-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 173 1.4E-49 T 14-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 PIRSF PIRSF000109 1 471 2.7E-215 T 14-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 Gene3D G3DSA:1.20.5.320 435 470 1.8E-18 T 14-10-2018 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 3.2E-83 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 3.2E-83 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 3.2E-83 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 120 145 3.2E-83 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 67 96 3.2E-83 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 3.2E-83 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 SUPERFAMILY SSF51735 4 176 3.71E-54 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 Gene3D G3DSA:3.40.50.720 1 180 5.1E-56 T 14-10-2018 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 SMART SM01350 179 469 5.8E-194 T 14-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1975 d3d9452d099fcd9bd5bbd813461f237c 471 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 469 5.2E-216 T 14-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_1115 5572f8805127c6339ca168971cbebb10 352 SUPERFAMILY SSF53300 100 301 3.53E-32 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1115 5572f8805127c6339ca168971cbebb10 352 Gene3D G3DSA:3.40.50.410 103 306 1.7E-48 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1115 5572f8805127c6339ca168971cbebb10 352 SMART SM00327 102 306 1.2E-19 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_1115 5572f8805127c6339ca168971cbebb10 352 Pfam PF00092 von Willebrand factor type A domain 104 298 3.9E-23 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 ProSitePatterns PS00902 Glutamate 5-kinase signature. 213 230 - T 14-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 Gene3D G3DSA:3.40.1160.10 2 271 4.2E-87 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 SMART SM00359 283 366 8.9E-17 T 14-10-2018 IPR002478 PUA domain GO:0003723 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 PIRSF PIRSF000729 6 374 6.2E-126 T 14-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 Pfam PF01472 PUA domain 283 357 2.8E-20 T 14-10-2018 IPR002478 PUA domain GO:0003723 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 SUPERFAMILY SSF53633 12 263 3.4E-66 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 SUPERFAMILY SSF88697 282 373 8.84E-25 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 Pfam PF00696 Amino acid kinase family 12 239 2.1E-42 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 TIGRFAM TIGR01027 proB: glutamate 5-kinase 14 372 1.5E-124 T 14-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 Hamap MF_00456 Glutamate 5-kinase [proB]. 11 269 34.862 T 14-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 154 181 3.1E-51 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 48 62 3.1E-51 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 215 235 3.1E-51 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 122 143 3.1E-51 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 PRINTS PR00474 Glutamate 5-kinase family signature 82 110 3.1E-51 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Thimo_1317 77a376afa96d059b482fac4f75247ebd 374 Gene3D G3DSA:2.30.130.10 272 374 6.9E-33 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 Thimo_3760 a1dd2da77394c7cd10348c11670bdd96 389 Pfam PF03743 Bacterial conjugation TrbI-like protein 202 376 2.6E-45 T 14-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI Thimo_3760 a1dd2da77394c7cd10348c11670bdd96 389 Gene3D G3DSA:2.40.128.260 325 385 3.0E-5 T 14-10-2018 Thimo_3760 a1dd2da77394c7cd10348c11670bdd96 389 Gene3D G3DSA:2.40.128.260 196 319 1.3E-40 T 14-10-2018 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 2.2E-83 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Gene3D G3DSA:3.30.1490.20 131 203 9.8E-156 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Gene3D G3DSA:3.30.470.20 87 432 9.8E-156 T 14-10-2018 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 3.5E-38 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 SUPERFAMILY SSF51246 331 444 1.2E-41 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 8.0E-231 T 14-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 7.9E-45 T 14-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 SUPERFAMILY SSF52440 1 113 4.24E-47 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 Gene3D G3DSA:3.40.50.20 1 85 5.3E-35 T 14-10-2018 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 SUPERFAMILY SSF56059 83 342 2.3E-68 T 14-10-2018 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0183 7f7b7846d6bc1f4c5368eeb9f253d3a6 446 SMART SM00878 336 441 7.1E-62 T 14-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Thimo_1303 2ba6a304ad066026e13f57e912ec806f 370 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 17 366 1.3E-103 T 14-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Thimo_1303 2ba6a304ad066026e13f57e912ec806f 370 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 11 368 60.541 T 14-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Thimo_1303 2ba6a304ad066026e13f57e912ec806f 370 Pfam PF00155 Aminotransferase class I and II 39 361 5.9E-50 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Thimo_1303 2ba6a304ad066026e13f57e912ec806f 370 Gene3D G3DSA:3.90.1150.10 30 361 5.1E-116 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_1303 2ba6a304ad066026e13f57e912ec806f 370 SUPERFAMILY SSF53383 22 367 6.4E-80 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1303 2ba6a304ad066026e13f57e912ec806f 370 Gene3D G3DSA:3.40.640.10 52 276 5.1E-116 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_0209 542a58ea11c801a3992d908c3611001a 316 SUPERFAMILY SSF56042 141 297 4.54E-34 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_0209 542a58ea11c801a3992d908c3611001a 316 Gene3D G3DSA:3.30.1330.10 1 142 9.4E-45 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_0209 542a58ea11c801a3992d908c3611001a 316 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 314 6.2E-93 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Thimo_0209 542a58ea11c801a3992d908c3611001a 316 Pfam PF00586 AIR synthase related protein, N-terminal domain 27 136 7.7E-23 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Thimo_0209 542a58ea11c801a3992d908c3611001a 316 PIRSF PIRSF005303 2 314 2.7E-79 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Thimo_0209 542a58ea11c801a3992d908c3611001a 316 SUPERFAMILY SSF55326 3 136 2.27E-32 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_0209 542a58ea11c801a3992d908c3611001a 316 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 314 27.139 T 14-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Thimo_0209 542a58ea11c801a3992d908c3611001a 316 Pfam PF02769 AIR synthase related protein, C-terminal domain 148 294 3.6E-9 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Thimo_0209 542a58ea11c801a3992d908c3611001a 316 Gene3D G3DSA:3.90.650.10 143 315 8.2E-52 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 Pfam PF06827 Zinc finger found in FPG and IleRS 233 260 2.2E-4 T 14-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 123 207 9.9E-11 T 14-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 SMART SM01232 123 215 4.5E-14 T 14-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 Gene3D G3DSA:3.20.190.10 2 124 1.4E-19 T 14-10-2018 IPR035937 MutM-like, N-terminal Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 SUPERFAMILY SSF46946 122 205 1.91E-15 T 14-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 SUPERFAMILY SSF57716 216 260 1.4E-9 T 14-10-2018 Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 SUPERFAMILY SSF81624 2 96 3.14E-18 T 14-10-2018 IPR035937 MutM-like, N-terminal Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 101 2.0E-10 T 14-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 Gene3D G3DSA:1.10.8.50 125 261 2.2E-30 T 14-10-2018 Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 SMART SM00898 2 107 8.2E-11 T 14-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Thimo_1591 f0d111655fb6280cc978543d7fb54d11 262 ProSitePatterns PS01242 Zinc finger FPG-type signature. 234 260 - T 14-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 Thimo_0838 67b289bf95f0774fc74d876882337853 128 Gene3D G3DSA:3.10.580.10 1 127 4.8E-29 T 14-10-2018 Thimo_0838 67b289bf95f0774fc74d876882337853 128 SUPERFAMILY SSF54631 1 124 1.39E-26 T 14-10-2018 Thimo_0838 67b289bf95f0774fc74d876882337853 128 SMART SM00116 10 59 4.0E-9 T 14-10-2018 IPR000644 CBS domain Thimo_0838 67b289bf95f0774fc74d876882337853 128 SMART SM00116 77 124 6.3E-7 T 14-10-2018 IPR000644 CBS domain Thimo_0838 67b289bf95f0774fc74d876882337853 128 Pfam PF00571 CBS domain 70 124 8.7E-8 T 14-10-2018 IPR000644 CBS domain Thimo_0838 67b289bf95f0774fc74d876882337853 128 Pfam PF00571 CBS domain 3 58 2.1E-11 T 14-10-2018 IPR000644 CBS domain Thimo_2974 683210165a0d25e85b24561d4f901991 176 Gene3D G3DSA:2.40.50.140 1 115 1.1E-50 T 14-10-2018 Thimo_2974 683210165a0d25e85b24561d4f901991 176 SUPERFAMILY SSF50249 5 176 2.5E-59 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2974 683210165a0d25e85b24561d4f901991 176 Pfam PF00436 Single-strand binding protein family 6 112 2.4E-43 T 14-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Thimo_2974 683210165a0d25e85b24561d4f901991 176 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 4 176 1.4E-55 T 14-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Thimo_2974 683210165a0d25e85b24561d4f901991 176 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 39.241 T 14-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 449 60.3 T 14-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 Pfam PF08245 Mur ligase middle domain 108 291 5.5E-20 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 SUPERFAMILY SSF53244 310 448 3.79E-38 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 Gene3D G3DSA:3.90.190.20 314 450 1.2E-27 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 SUPERFAMILY SSF51984 1 90 4.05E-22 T 14-10-2018 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 386 1.5E-10 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 Pfam PF01225 Mur ligase family, catalytic domain 2 99 1.1E-17 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 SUPERFAMILY SSF53623 96 308 2.49E-51 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 Gene3D G3DSA:3.40.1190.10 91 313 5.7E-57 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 Gene3D G3DSA:3.40.50.720 1 90 1.2E-34 T 14-10-2018 Thimo_0063 6c28d5fe7859859626f84db3ba223363 454 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 448 1.4E-217 T 14-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 Thimo_0033 5fc9b1f93300d334373dd43aa0cfc64f 82 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 7 46 2.2E-6 T 14-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Thimo_0033 5fc9b1f93300d334373dd43aa0cfc64f 82 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 4 45 3.8E-15 T 14-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Thimo_0033 5fc9b1f93300d334373dd43aa0cfc64f 82 SUPERFAMILY SSF89447 1 43 2.79E-10 T 14-10-2018 IPR037914 SpoVT-AbrB domain superfamily Thimo_0033 5fc9b1f93300d334373dd43aa0cfc64f 82 Gene3D G3DSA:2.10.260.10 1 42 2.1E-12 T 14-10-2018 Thimo_0033 5fc9b1f93300d334373dd43aa0cfc64f 82 SMART SM00966 4 50 8.9E-10 T 14-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Thimo_0289 98f60afb94da40f3cca3625f0f6f212f 162 Gene3D G3DSA:1.20.58.300 8 133 2.3E-17 T 14-10-2018 Thimo_0289 98f60afb94da40f3cca3625f0f6f212f 162 SUPERFAMILY SSF140566 11 133 6.15E-19 T 14-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 Thimo_0289 98f60afb94da40f3cca3625f0f6f212f 162 Pfam PF05130 FlgN protein 10 150 8.3E-19 T 14-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Thimo_0427 94d3da11df91393134d44ea65cc4e55a 522 ProSitePatterns PS00455 Putative AMP-binding domain signature. 171 182 - T 14-10-2018 IPR020845 AMP-binding, conserved site Thimo_0427 94d3da11df91393134d44ea65cc4e55a 522 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 500 7.5E-22 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Thimo_0427 94d3da11df91393134d44ea65cc4e55a 522 Pfam PF00501 AMP-binding enzyme 17 417 4.7E-114 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Thimo_0427 94d3da11df91393134d44ea65cc4e55a 522 SUPERFAMILY SSF56801 12 508 6.28E-159 T 14-10-2018 Thimo_0427 94d3da11df91393134d44ea65cc4e55a 522 Gene3D G3DSA:3.40.50.12780 15 413 1.6E-128 T 14-10-2018 Thimo_0427 94d3da11df91393134d44ea65cc4e55a 522 Gene3D G3DSA:3.30.300.310 414 512 7.5E-31 T 14-10-2018 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 Gene3D G3DSA:1.20.89.10 321 507 3.0E-186 T 14-10-2018 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 Pfam PF11844 Domain of unknown function (DUF3364) 1 56 4.9E-20 T 14-10-2018 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 SUPERFAMILY SSF53807 3 522 1.77E-167 T 14-10-2018 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 501 4.0E-119 T 14-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 Gene3D G3DSA:3.40.50.1980 70 210 3.0E-186 T 14-10-2018 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 Gene3D G3DSA:3.40.50.1980 59 484 3.0E-186 T 14-10-2018 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 88 95 - T 14-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 151 165 - T 14-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 2 523 4.6E-264 T 14-10-2018 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Thimo_3243 c7ef67f72ed6e5e8018a56a03209f837 523 Gene3D G3DSA:3.40.50.1980 211 491 3.0E-186 T 14-10-2018 Thimo_0472 8933b1deb3e6a9ace339fc444bedd5de 490 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 37 487 1.9E-154 T 14-10-2018 IPR012831 Precorrin 3B synthase CobZ Thimo_0472 8933b1deb3e6a9ace339fc444bedd5de 490 SUPERFAMILY SSF56425 293 427 7.32E-19 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0472 8933b1deb3e6a9ace339fc444bedd5de 490 Pfam PF00890 FAD binding domain 37 468 2.9E-33 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0472 8933b1deb3e6a9ace339fc444bedd5de 490 SUPERFAMILY SSF51905 37 487 1.05E-30 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0472 8933b1deb3e6a9ace339fc444bedd5de 490 Gene3D G3DSA:3.90.700.10 267 423 2.2E-83 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0472 8933b1deb3e6a9ace339fc444bedd5de 490 Gene3D G3DSA:3.50.50.60 37 482 2.2E-83 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0338 6bf653bd8bbea2da65bb70de7d9d7840 240 SUPERFAMILY SSF56214 28 121 1.7E-13 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_0338 6bf653bd8bbea2da65bb70de7d9d7840 240 SUPERFAMILY SSF56214 129 226 2.62E-12 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_0338 6bf653bd8bbea2da65bb70de7d9d7840 240 Gene3D G3DSA:3.90.470.20 24 151 4.1E-23 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_0338 6bf653bd8bbea2da65bb70de7d9d7840 240 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 130 189 3.3E-6 T 14-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Thimo_3660 f9935ccdc7b355074bb3bd548118033f 143 PRINTS PR01438 Universal stress protein signature 2 20 3.5E-5 T 14-10-2018 IPR006015 Universal stress protein A Thimo_3660 f9935ccdc7b355074bb3bd548118033f 143 PRINTS PR01438 Universal stress protein signature 98 110 3.5E-5 T 14-10-2018 IPR006015 Universal stress protein A Thimo_3660 f9935ccdc7b355074bb3bd548118033f 143 PRINTS PR01438 Universal stress protein signature 115 137 3.5E-5 T 14-10-2018 IPR006015 Universal stress protein A Thimo_3660 f9935ccdc7b355074bb3bd548118033f 143 Gene3D G3DSA:3.40.50.620 1 140 8.5E-14 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3660 f9935ccdc7b355074bb3bd548118033f 143 SUPERFAMILY SSF52402 1 137 2.43E-15 T 14-10-2018 Thimo_3660 f9935ccdc7b355074bb3bd548118033f 143 Pfam PF00582 Universal stress protein family 1 137 1.8E-12 T 14-10-2018 IPR006016 UspA Thimo_3463 4f449148bcb842e7bfc7d118ed74ee65 157 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 60 97 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Thimo_3463 4f449148bcb842e7bfc7d118ed74ee65 157 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 15 157 46.927 T 14-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Thimo_3463 4f449148bcb842e7bfc7d118ed74ee65 157 Gene3D G3DSA:3.40.140.10 5 157 5.9E-62 T 14-10-2018 Thimo_3463 4f449148bcb842e7bfc7d118ed74ee65 157 SUPERFAMILY SSF53927 11 157 4.18E-55 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Thimo_3463 4f449148bcb842e7bfc7d118ed74ee65 157 Pfam PF14437 MafB19-like deaminase 12 157 9.2E-28 T 14-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 302 914 1.6E-212 T 14-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 Gene3D G3DSA:3.20.70.20 226 922 9.4E-247 T 14-10-2018 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 299 371 4.3E-23 T 14-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 PRINTS PR01183 Ribonucleotide reductase large chain signature 452 471 7.3E-44 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 PRINTS PR01183 Ribonucleotide reductase large chain signature 766 793 7.3E-44 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 PRINTS PR01183 Ribonucleotide reductase large chain signature 662 684 7.3E-44 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 PRINTS PR01183 Ribonucleotide reductase large chain signature 690 713 7.3E-44 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 PRINTS PR01183 Ribonucleotide reductase large chain signature 587 598 7.3E-44 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 PRINTS PR01183 Ribonucleotide reductase large chain signature 624 647 7.3E-44 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 SUPERFAMILY SSF48168 158 375 1.29E-58 T 14-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 755 777 - T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 SUPERFAMILY SSF51998 376 914 3.05E-180 T 14-10-2018 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 Pfam PF03477 ATP cone domain 38 134 5.4E-17 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Thimo_1213 66f7079c95ed3b2a6276984d07893220 975 Pfam PF02867 Ribonucleotide reductase, barrel domain 377 911 3.2E-179 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1417 613ec7f3cb0ac6cb1538698b32fe40f9 383 Pfam PF13439 Glycosyltransferase Family 4 20 185 6.8E-16 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1417 613ec7f3cb0ac6cb1538698b32fe40f9 383 Gene3D G3DSA:3.40.50.2000 207 365 6.7E-42 T 14-10-2018 Thimo_1417 613ec7f3cb0ac6cb1538698b32fe40f9 383 Pfam PF00534 Glycosyl transferases group 1 204 350 1.6E-35 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1417 613ec7f3cb0ac6cb1538698b32fe40f9 383 Gene3D G3DSA:3.40.50.2000 6 192 2.2E-12 T 14-10-2018 Thimo_1417 613ec7f3cb0ac6cb1538698b32fe40f9 383 SUPERFAMILY SSF53756 19 376 3.14E-70 T 14-10-2018 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 6 1182 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 PIRSF PIRSF000159 1 1192 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF52518 4 259 6.47E-75 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 SMART SM00890 631 688 3.4E-29 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.40.50.920 260 421 2.4E-54 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF53323 424 677 2.09E-78 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.30.70.20 678 801 7.6E-35 T 14-10-2018 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF10371 Domain of unknown function 634 687 7.5E-23 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF54862 674 849 2.09E-22 T 14-10-2018 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF52922 261 418 3.43E-42 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF13484 4Fe-4S double cluster binding domain 698 767 1.6E-11 T 14-10-2018 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.40.50.970 805 1185 1.4E-151 T 14-10-2018 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 971 1083 1.3E-7 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.40.50.970 3 259 3.3E-99 T 14-10-2018 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 433 617 1.0E-29 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 755 766 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Gene3D G3DSA:3.40.920.10 423 633 3.0E-82 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 270 352 2.7E-12 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 SUPERFAMILY SSF52518 804 1188 1.01E-125 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1404 23d01b64a4c844a05235a0d1d33cdb86 1193 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 22 248 1.2E-76 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Thimo_0652 48e00a26fce4eea4bcc63682751eb51f 738 Pfam PF00263 Bacterial type II and III secretion system protein 373 553 1.5E-38 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 Thimo_0652 48e00a26fce4eea4bcc63682751eb51f 738 PRINTS PR00811 Bacterial general secretion pathway protein D signature 519 537 1.6E-13 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0652 48e00a26fce4eea4bcc63682751eb51f 738 PRINTS PR00811 Bacterial general secretion pathway protein D signature 290 300 1.6E-13 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0652 48e00a26fce4eea4bcc63682751eb51f 738 PRINTS PR00811 Bacterial general secretion pathway protein D signature 368 392 1.6E-13 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0652 48e00a26fce4eea4bcc63682751eb51f 738 PRINTS PR00811 Bacterial general secretion pathway protein D signature 542 556 1.6E-13 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0652 48e00a26fce4eea4bcc63682751eb51f 738 Pfam PF11920 Protein of unknown function (DUF3438) 620 734 7.4E-11 T 14-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Thimo_0652 48e00a26fce4eea4bcc63682751eb51f 738 Gene3D G3DSA:3.55.50.30 30 127 6.9E-10 T 14-10-2018 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 854 971 1.8E-18 T 14-10-2018 IPR000014 PAS domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 428 551 1.0E-17 T 14-10-2018 IPR000014 PAS domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 727 849 8.9E-18 T 14-10-2018 IPR000014 PAS domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Pfam PF13185 GAF domain 572 718 3.9E-16 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00267 964 1137 3.4E-65 T 14-10-2018 IPR000160 GGDEF domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00091 428 495 1.7E-7 T 14-10-2018 IPR000014 PAS domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00091 731 800 1.1E-4 T 14-10-2018 IPR000014 PAS domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00091 850 916 3.4E-4 T 14-10-2018 IPR000014 PAS domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 971 1135 2.6E-44 T 14-10-2018 IPR000160 GGDEF domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00052 1147 1393 8.2E-100 T 14-10-2018 IPR001633 EAL domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Gene3D G3DSA:3.30.450.20 721 835 5.2E-20 T 14-10-2018 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Gene3D G3DSA:3.30.70.270 969 1150 1.9E-57 T 14-10-2018 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SUPERFAMILY SSF55785 839 962 1.77E-28 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SUPERFAMILY SSF141868 1152 1400 2.09E-82 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Gene3D G3DSA:3.30.450.20 437 555 1.4E-20 T 14-10-2018 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Gene3D G3DSA:3.30.450.20 836 958 4.2E-34 T 14-10-2018 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SUPERFAMILY SSF55785 448 553 7.25E-19 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Gene3D G3DSA:3.20.20.450 1151 1410 2.4E-93 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Pfam PF00990 Diguanylate cyclase, GGDEF domain 975 1133 2.0E-47 T 14-10-2018 IPR000160 GGDEF domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00065 563 727 0.0021 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Pfam PF00563 EAL domain 1154 1388 1.3E-67 T 14-10-2018 IPR001633 EAL domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00086 502 544 2.0E-5 T 14-10-2018 IPR001610 PAC motif Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00086 802 842 0.48 T 14-10-2018 IPR001610 PAC motif Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SMART SM00086 922 964 1.0E-6 T 14-10-2018 IPR001610 PAC motif Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Pfam PF08447 PAS fold 454 537 7.0E-11 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SUPERFAMILY SSF55073 980 1138 6.04E-48 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SUPERFAMILY SSF55785 722 840 2.74E-18 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Gene3D G3DSA:3.30.450.40 556 720 1.7E-22 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Pfam PF13188 PAS domain 731 772 1.3E-8 T 14-10-2018 IPR000014 PAS domain Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 SUPERFAMILY SSF55781 538 718 1.37E-19 T 14-10-2018 Thimo_2055 8ce2d7b27a7cf034b8256fd2040ba21d 1414 Pfam PF13426 PAS domain 861 963 1.0E-12 T 14-10-2018 IPR000014 PAS domain Thimo_2762 a69c5f356945b79d6386b366c4ec4f3c 111 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 1.4E-34 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Thimo_2762 a69c5f356945b79d6386b366c4ec4f3c 111 Gene3D G3DSA:3.30.160.100 1 104 3.0E-37 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like Thimo_2762 a69c5f356945b79d6386b366c4ec4f3c 111 SUPERFAMILY SSF69754 2 99 1.05E-36 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like Thimo_2762 a69c5f356945b79d6386b366c4ec4f3c 111 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 6.8E-29 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 13 97 1.1E-4 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 242 353 3.8E-16 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 124 237 3.6E-25 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 Gene3D G3DSA:3.30.479.10 239 356 1.2E-23 T 14-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 Gene3D G3DSA:3.30.479.10 121 238 2.5E-33 T 14-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 Gene3D G3DSA:3.30.479.10 9 119 4.2E-14 T 14-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 SUPERFAMILY SSF55620 122 237 1.45E-30 T 14-10-2018 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 SUPERFAMILY SSF55620 11 97 2.84E-9 T 14-10-2018 Thimo_2970 0201436901a42d748c6c4f15a903e422 365 SUPERFAMILY SSF55620 239 354 5.17E-20 T 14-10-2018 Thimo_0798 294e4bee575816a04e2945b537f4e400 97 Gene3D G3DSA:3.10.450.530 2 90 4.8E-15 T 14-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily Thimo_0798 294e4bee575816a04e2945b537f4e400 97 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 8 87 1.9E-27 T 14-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 Pfam PF00176 SNF2 family N-terminal domain 496 748 7.2E-43 T 14-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 Gene3D G3DSA:3.40.50.300 715 922 5.8E-44 T 14-10-2018 Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 SMART SM00490 814 902 6.9E-17 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 SUPERFAMILY SSF52540 469 679 1.34E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 Gene3D G3DSA:1.20.120.850 729 947 5.8E-44 T 14-10-2018 Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 Pfam PF00271 Helicase conserved C-terminal domain 786 902 1.9E-11 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 Gene3D G3DSA:3.40.50.10810 461 699 2.0E-58 T 14-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 SUPERFAMILY SSF52540 609 945 1.6E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1779 d10cdb60276da4d111d1d09c43f8a3b5 966 SMART SM00487 473 676 9.6E-23 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 Gene3D G3DSA:1.10.150.240 16 96 3.1E-65 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 109 122 2.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 161 181 2.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 159 2.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 SUPERFAMILY SSF56784 1 221 1.52E-40 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 196 1.4E-26 T 14-10-2018 Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 35 196 9.2E-12 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_0390 af23eba1fc15e12e13a739359d12fbf9 256 Gene3D G3DSA:3.40.50.1000 4 216 3.1E-65 T 14-10-2018 IPR023214 HAD superfamily Thimo_1672 85d124c44c6f7161705583393e1d4501 365 Gene3D G3DSA:2.40.50.100 228 262 1.2E-20 T 14-10-2018 Thimo_1672 85d124c44c6f7161705583393e1d4501 365 Gene3D G3DSA:2.40.50.100 65 128 3.4E-9 T 14-10-2018 Thimo_1672 85d124c44c6f7161705583393e1d4501 365 Gene3D G3DSA:2.40.30.170 263 348 1.2E-20 T 14-10-2018 Thimo_1672 85d124c44c6f7161705583393e1d4501 365 Gene3D G3DSA:1.10.287.470 198 227 1.2E-20 T 14-10-2018 Thimo_1672 85d124c44c6f7161705583393e1d4501 365 SUPERFAMILY SSF111369 199 347 4.84E-9 T 14-10-2018 Thimo_1672 85d124c44c6f7161705583393e1d4501 365 Gene3D G3DSA:1.10.287.470 129 193 4.1E-8 T 14-10-2018 Thimo_1672 85d124c44c6f7161705583393e1d4501 365 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 340 6.8E-15 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_0734 355748dd64476188464a1a0fb26d6220 408 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 6 402 29.78 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Thimo_0734 355748dd64476188464a1a0fb26d6220 408 Gene3D G3DSA:3.20.20.20 5 291 1.7E-95 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0734 355748dd64476188464a1a0fb26d6220 408 Pfam PF04551 GcpE protein 13 398 3.3E-113 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Thimo_0734 355748dd64476188464a1a0fb26d6220 408 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 8 398 6.0E-121 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Thimo_0734 355748dd64476188464a1a0fb26d6220 408 PIRSF PIRSF004640 1 407 5.0E-131 T 14-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Thimo_0734 355748dd64476188464a1a0fb26d6220 408 Gene3D G3DSA:3.30.413.10 292 408 1.8E-38 T 14-10-2018 Thimo_2111 2958024e8527dec40f917596040f0f93 453 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 77 415 6.6E-40 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_2111 2958024e8527dec40f917596040f0f93 453 PIRSF PIRSF500824 2 437 2.3E-202 T 14-10-2018 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2111 2958024e8527dec40f917596040f0f93 453 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 22 428 40.177 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2111 2958024e8527dec40f917596040f0f93 453 TIGRFAM TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme 14 430 2.7E-196 T 14-10-2018 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2111 2958024e8527dec40f917596040f0f93 453 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 106 120 - T 14-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_2111 2958024e8527dec40f917596040f0f93 453 Gene3D G3DSA:3.40.50.1100 15 239 5.4E-170 T 14-10-2018 Thimo_2111 2958024e8527dec40f917596040f0f93 453 SUPERFAMILY SSF53686 28 428 1.44E-109 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_2111 2958024e8527dec40f917596040f0f93 453 Gene3D G3DSA:3.40.50.1100 14 421 5.4E-170 T 14-10-2018 Thimo_2111 2958024e8527dec40f917596040f0f93 453 PIRSF PIRSF001413 10 434 1.1E-124 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Thimo_0394 6cafb52d132df02d5bb6a2e53c187550 98 PIRSF PIRSF029218 2 98 9.3E-29 T 14-10-2018 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 Thimo_0394 6cafb52d132df02d5bb6a2e53c187550 98 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 93 1.3E-18 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Thimo_0394 6cafb52d132df02d5bb6a2e53c187550 98 Gene3D G3DSA:3.30.2310.20 2 98 8.1E-28 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_1108 23fae76e63afc4bc0cde316c7760262b 140 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 13 132 22.771 T 14-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 Thimo_1108 23fae76e63afc4bc0cde316c7760262b 140 SUPERFAMILY SSF50685 37 132 4.88E-13 T 14-10-2018 IPR036908 RlpA-like domain superfamily Thimo_1108 23fae76e63afc4bc0cde316c7760262b 140 Gene3D G3DSA:2.40.40.10 39 133 1.6E-37 T 14-10-2018 IPR036908 RlpA-like domain superfamily Thimo_1108 23fae76e63afc4bc0cde316c7760262b 140 Pfam PF03330 Lytic transglycolase 40 129 2.0E-25 T 14-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Thimo_1108 23fae76e63afc4bc0cde316c7760262b 140 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 42 134 4.2E-43 T 14-10-2018 IPR012997 Rare lipoprotein A Thimo_3025 db33fc759ac32ede33c6d925dc254ccb 426 Gene3D G3DSA:3.40.50.1980 20 421 1.7E-169 T 14-10-2018 Thimo_3025 db33fc759ac32ede33c6d925dc254ccb 426 Gene3D G3DSA:3.40.50.1980 169 293 1.7E-169 T 14-10-2018 Thimo_3025 db33fc759ac32ede33c6d925dc254ccb 426 Hamap MF_00352 Light-independent protochlorophyllide reductase subunit N [bchN]. 15 425 52.857 T 14-10-2018 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3025 db33fc759ac32ede33c6d925dc254ccb 426 Gene3D G3DSA:3.40.50.1980 29 168 1.7E-169 T 14-10-2018 Thimo_3025 db33fc759ac32ede33c6d925dc254ccb 426 SUPERFAMILY SSF53807 19 421 5.56E-76 T 14-10-2018 Thimo_3025 db33fc759ac32ede33c6d925dc254ccb 426 PIRSF PIRSF000162 7 426 1.3E-174 T 14-10-2018 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3025 db33fc759ac32ede33c6d925dc254ccb 426 TIGRFAM TIGR01279 DPOR_bchN: light-independent protochlorophyllide reductase, N subunit 20 425 5.7E-153 T 14-10-2018 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3025 db33fc759ac32ede33c6d925dc254ccb 426 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 35 410 1.5E-31 T 14-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 SMART SM00387 339 458 1.8E-40 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 397 1.2E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 1.2E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 411 1.2E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 455 1.2E-15 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 SUPERFAMILY SSF52172 470 594 2.13E-21 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 SUPERFAMILY SSF47384 211 293 4.71E-21 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 SUPERFAMILY SSF55874 281 460 1.2E-46 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 SUPERFAMILY SSF52172 623 744 7.12E-39 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 SMART SM00448 474 589 3.8E-16 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 SMART SM00448 623 739 1.4E-35 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 SMART SM00388 227 292 3.0E-22 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 Pfam PF00072 Response regulator receiver domain 625 732 3.0E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 Pfam PF00072 Response regulator receiver domain 477 588 1.1E-11 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 Gene3D G3DSA:3.30.565.10 291 461 1.4E-53 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 Gene3D G3DSA:1.10.287.130 191 290 4.4E-27 T 14-10-2018 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 457 7.9E-31 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 Pfam PF00512 His Kinase A (phospho-acceptor) domain 227 292 4.9E-18 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 Gene3D G3DSA:3.40.50.12740 473 615 3.9E-21 T 14-10-2018 Thimo_0540 602da6c47324339e1ae61b466df1ee97 750 Gene3D G3DSA:3.40.50.12740 621 746 2.6E-42 T 14-10-2018 Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 Gene3D G3DSA:3.40.50.620 1 186 1.2E-61 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 SMART SM00904 183 308 3.8E-63 T 14-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 Gene3D G3DSA:2.40.30.30 188 310 2.6E-39 T 14-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 Pfam PF06574 FAD synthetase 13 167 4.9E-51 T 14-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 SUPERFAMILY SSF82114 174 308 2.18E-44 T 14-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 307 1.3E-93 T 14-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 PIRSF PIRSF004491 1 312 3.1E-100 T 14-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 Pfam PF01687 Riboflavin kinase 184 307 6.7E-37 T 14-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 Thimo_1140 91f1204e93a48af3346a6fcd513ded45 316 SUPERFAMILY SSF52374 16 175 4.15E-32 T 14-10-2018 Thimo_0078 e3845f76760e9b1698eadb48353c43f6 398 SMART SM00729 21 239 4.5E-55 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0078 e3845f76760e9b1698eadb48353c43f6 398 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 23 376 4.1E-100 T 14-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 Thimo_0078 e3845f76760e9b1698eadb48353c43f6 398 Pfam PF06969 HemN C-terminal domain 325 385 9.0E-10 T 14-10-2018 IPR010723 HemN, C-terminal Thimo_0078 e3845f76760e9b1698eadb48353c43f6 398 Gene3D G3DSA:3.80.30.20 9 321 3.5E-92 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0078 e3845f76760e9b1698eadb48353c43f6 398 Pfam PF04055 Radical SAM superfamily 26 196 5.0E-20 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0078 e3845f76760e9b1698eadb48353c43f6 398 SUPERFAMILY SSF102114 18 397 1.83E-105 T 14-10-2018 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 SUPERFAMILY SSF48150 12 230 9.11E-75 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 40 172 1.1E-19 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 Pfam PF14815 NUDIX domain 241 350 9.5E-18 T 14-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 ProSitePatterns PS01155 Endonuclease III family signature. 107 136 - T 14-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 SMART SM00478 44 195 6.3E-51 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 Pfam PF00633 Helix-hairpin-helix motif 105 132 1.8E-5 T 14-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 Gene3D G3DSA:1.10.340.30 26 137 8.5E-87 T 14-10-2018 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 Gene3D G3DSA:3.90.79.10 239 357 3.3E-9 T 14-10-2018 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 12 273 3.1E-107 T 14-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 Gene3D G3DSA:1.10.1670.10 15 216 8.5E-87 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Thimo_2037 091a5467f726a59f1e978627e3b9030f 371 SUPERFAMILY SSF55811 225 352 1.08E-22 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 SUPERFAMILY SSF54631 274 396 1.01E-22 T 14-10-2018 Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 Pfam PF02163 Peptidase family M50 164 207 5.8E-7 T 14-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 Gene3D G3DSA:3.10.580.10 265 402 7.3E-23 T 14-10-2018 Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 Pfam PF00571 CBS domain 279 330 5.6E-5 T 14-10-2018 IPR000644 CBS domain Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 Pfam PF00571 CBS domain 341 397 1.4E-11 T 14-10-2018 IPR000644 CBS domain Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 PIRSF PIRSF006404 13 405 7.5E-97 T 14-10-2018 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 Pfam PF13398 Peptidase M50B-like 64 139 3.1E-6 T 14-10-2018 Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 SMART SM00116 350 397 2.5E-8 T 14-10-2018 IPR000644 CBS domain Thimo_1859 5ae61a065c0091f00d1bccf076fc71a8 407 SMART SM00116 285 333 11.0 T 14-10-2018 IPR000644 CBS domain Thimo_3552 8b6f7dc91a46455a212efd603bef8f6a 417 SUPERFAMILY SSF53790 19 220 8.9E-42 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Thimo_3552 8b6f7dc91a46455a212efd603bef8f6a 417 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 247 367 1.6E-31 T 14-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 Thimo_3552 8b6f7dc91a46455a212efd603bef8f6a 417 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 20 205 1.0E-18 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Thimo_3552 8b6f7dc91a46455a212efd603bef8f6a 417 Gene3D G3DSA:3.40.50.150 232 416 5.5E-63 T 14-10-2018 Thimo_3552 8b6f7dc91a46455a212efd603bef8f6a 417 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 22 216 2.8E-50 T 14-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 Thimo_3552 8b6f7dc91a46455a212efd603bef8f6a 417 PIRSF PIRSF036428 15 417 1.4E-129 T 14-10-2018 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00860+2.1.1.132 Thimo_3552 8b6f7dc91a46455a212efd603bef8f6a 417 SUPERFAMILY SSF53335 221 392 2.56E-27 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3552 8b6f7dc91a46455a212efd603bef8f6a 417 Gene3D G3DSA:3.40.1010.10 19 120 3.9E-17 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 Gene3D G3DSA:3.90.45.10 1 171 8.7E-49 T 14-10-2018 IPR036821 Peptide deformylase superfamily Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 156 1.2E-38 T 14-10-2018 IPR023635 Peptide deformylase Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 PRINTS PR01576 Peptide deformylase signature 106 124 1.3E-24 T 14-10-2018 IPR023635 Peptide deformylase Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 PRINTS PR01576 Peptide deformylase signature 94 105 1.3E-24 T 14-10-2018 IPR023635 Peptide deformylase Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 PRINTS PR01576 Peptide deformylase signature 34 63 1.3E-24 T 14-10-2018 IPR023635 Peptide deformylase Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 PRINTS PR01576 Peptide deformylase signature 125 154 1.3E-24 T 14-10-2018 IPR023635 Peptide deformylase Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 Hamap MF_00163 Peptide deformylase [def]. 2 167 25.902 T 14-10-2018 IPR023635 Peptide deformylase Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 Pfam PF01327 Polypeptide deformylase 5 155 8.7E-41 T 14-10-2018 IPR023635 Peptide deformylase Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 PIRSF PIRSF004749 1 175 1.5E-47 T 14-10-2018 IPR023635 Peptide deformylase Thimo_2183 8db175126e58a31c2ee8eaec52be5818 177 SUPERFAMILY SSF56420 3 166 1.1E-48 T 14-10-2018 IPR036821 Peptide deformylase superfamily Thimo_2850 b444696ba80c9e9d0b79fa4cc2a1142f 122 SUPERFAMILY SSF50193 1 122 8.63E-52 T 14-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_2850 b444696ba80c9e9d0b79fa4cc2a1142f 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 14-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2850 b444696ba80c9e9d0b79fa4cc2a1142f 122 SMART SM01374 1 122 6.1E-86 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Thimo_2850 b444696ba80c9e9d0b79fa4cc2a1142f 122 Gene3D G3DSA:2.40.150.20 1 122 6.3E-54 T 14-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_2850 b444696ba80c9e9d0b79fa4cc2a1142f 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.2E-57 T 14-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 Thimo_2850 b444696ba80c9e9d0b79fa4cc2a1142f 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.3E-54 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Thimo_2850 b444696ba80c9e9d0b79fa4cc2a1142f 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.034 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Thimo_2844 19967b1766001f5ef0fb87fac02183c3 118 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 118 26.089 T 14-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2844 19967b1766001f5ef0fb87fac02183c3 118 Gene3D G3DSA:3.30.420.100 1 118 1.8E-42 T 14-10-2018 Thimo_2844 19967b1766001f5ef0fb87fac02183c3 118 SUPERFAMILY SSF53137 3 116 7.85E-52 T 14-10-2018 Thimo_2844 19967b1766001f5ef0fb87fac02183c3 118 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 118 6.2E-40 T 14-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2844 19967b1766001f5ef0fb87fac02183c3 118 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 118 7.2E-40 T 14-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_3057 1565ba9241e2539d3bd7ee6097ee12e2 468 Pfam PF13727 CoA-binding domain 66 241 4.3E-18 T 14-10-2018 Thimo_3057 1565ba9241e2539d3bd7ee6097ee12e2 468 Gene3D G3DSA:3.40.50.720 141 261 6.5E-8 T 14-10-2018 Thimo_3057 1565ba9241e2539d3bd7ee6097ee12e2 468 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 44 468 4.7E-130 T 14-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase Thimo_3057 1565ba9241e2539d3bd7ee6097ee12e2 468 Pfam PF02397 Bacterial sugar transferase 277 461 1.4E-62 T 14-10-2018 IPR003362 Bacterial sugar transferase Thimo_3057 1565ba9241e2539d3bd7ee6097ee12e2 468 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 33 468 7.5E-138 T 14-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 Thimo_1806 f6e693329885c35297ab7a1ac6ee3803 366 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 204 215 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1806 f6e693329885c35297ab7a1ac6ee3803 366 Pfam PF08331 Domain of unknown function (DUF1730) 72 151 1.1E-23 T 14-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 Thimo_1806 f6e693329885c35297ab7a1ac6ee3803 366 SUPERFAMILY SSF46548 150 267 4.08E-19 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1806 f6e693329885c35297ab7a1ac6ee3803 366 Pfam PF13484 4Fe-4S double cluster binding domain 203 267 9.6E-19 T 14-10-2018 Thimo_1806 f6e693329885c35297ab7a1ac6ee3803 366 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 24 356 2.8E-150 T 14-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 Thimo_1806 f6e693329885c35297ab7a1ac6ee3803 366 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 17 326 50.048 T 14-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 Gene3D G3DSA:3.30.450.20 50 166 2.4E-31 T 14-10-2018 Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 SMART SM00387 430 543 8.6E-23 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 TIGRFAM TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL 48 537 5.0E-162 T 14-10-2018 IPR014285 Nitrogen fixation negative regulator NifL GO:0007165|GO:0009399 Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 Gene3D G3DSA:3.30.565.10 388 539 2.2E-29 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 Pfam PF00989 PAS fold 53 162 2.1E-21 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 Gene3D G3DSA:1.10.287.130 335 387 2.2E-29 T 14-10-2018 Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 SMART SM00086 123 165 2.9E-6 T 14-10-2018 IPR001610 PAC motif Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 SMART SM00091 177 240 9.0 T 14-10-2018 IPR000014 PAS domain Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 SMART SM00091 51 117 1.1E-6 T 14-10-2018 IPR000014 PAS domain Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 SUPERFAMILY SSF55785 57 163 3.49E-27 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 432 539 2.3E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 SUPERFAMILY SSF55785 161 268 1.29E-9 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 Gene3D G3DSA:3.30.450.20 169 311 2.8E-9 T 14-10-2018 Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 52 172 1.3E-21 T 14-10-2018 IPR000014 PAS domain Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 SUPERFAMILY SSF55874 392 539 5.63E-29 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 485 4.7E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 521 4.7E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1273 9e3cf663ceeba05129473ba0ec863586 545 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 499 4.7E-10 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 107 119 1.6E-22 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 237 247 1.6E-22 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 147 159 1.6E-22 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 119 133 1.6E-22 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 47 56 1.6E-22 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 169 181 1.6E-22 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 176 191 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 224 236 - T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 Pfam PF00813 FliP family 51 243 1.1E-77 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 49 68 4.5E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 197 218 4.5E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 68 88 4.5E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 176 196 4.5E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 88 107 4.5E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 221 246 4.5E-67 T 14-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Thimo_0280 d3620a0ba6f6510d2327af8f2fc8435f 248 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 51 247 1.2E-82 T 14-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Pfam PF14559 Tetratricopeptide repeat 73 136 1.6E-8 T 14-10-2018 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Pfam PF14559 Tetratricopeptide repeat 142 200 7.3E-8 T 14-10-2018 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 713 746 51.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 61 94 7.4E-4 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 747 780 10.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 404 437 2.3 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 540 573 32.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 163 196 6.2 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 336 369 15.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 129 162 0.034 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 231 264 150.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 27 60 12.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 506 539 140.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 95 128 220.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 574 607 1.2 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 642 675 32.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 197 230 380.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SMART SM00028 370 403 16.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SUPERFAMILY SSF48452 486 780 2.53E-26 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SUPERFAMILY SSF48452 223 480 1.3E-27 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Gene3D G3DSA:1.25.40.10 343 692 2.0E-54 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 SUPERFAMILY SSF48452 26 195 7.78E-31 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Gene3D G3DSA:1.25.40.10 693 791 1.2E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Pfam PF13432 Tetratricopeptide repeat 445 506 0.018 T 14-10-2018 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Pfam PF13432 Tetratricopeptide repeat 719 777 5.4E-4 T 14-10-2018 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Pfam PF13432 Tetratricopeptide repeat 303 367 3.0E-5 T 14-10-2018 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Pfam PF13432 Tetratricopeptide repeat 376 438 1.9E-7 T 14-10-2018 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Pfam PF13432 Tetratricopeptide repeat 544 605 3.5E-9 T 14-10-2018 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Gene3D G3DSA:1.25.40.10 208 275 8.5E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Gene3D G3DSA:1.25.40.10 276 342 9.9E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Gene3D G3DSA:1.25.40.10 20 140 8.0E-20 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3089 c9b7476cf5ab96638bf304b8552eca80 794 Gene3D G3DSA:1.25.40.10 141 207 1.4E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2346 38015a71de604d5c58feaf50ddea52af 114 Gene3D G3DSA:3.30.70.120 2 91 1.6E-22 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_2346 38015a71de604d5c58feaf50ddea52af 114 Pfam PF02641 Uncharacterized ACR, COG1993 6 86 7.3E-19 T 14-10-2018 IPR003793 Domain of unknown function DUF190 Thimo_2346 38015a71de604d5c58feaf50ddea52af 114 SUPERFAMILY SSF54913 2 101 5.78E-24 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_1327 df89c3eba30978492afb3b645580f551 367 Gene3D G3DSA:3.30.2340.10 176 309 7.5E-116 T 14-10-2018 Thimo_1327 df89c3eba30978492afb3b645580f551 367 Gene3D G3DSA:3.30.2350.20 23 345 7.5E-116 T 14-10-2018 Thimo_1327 df89c3eba30978492afb3b645580f551 367 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 17 176 1.6E-40 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_1327 df89c3eba30978492afb3b645580f551 367 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 195 345 1.1E-21 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_1327 df89c3eba30978492afb3b645580f551 367 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 11 350 27.508 T 14-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_1327 df89c3eba30978492afb3b645580f551 367 SUPERFAMILY SSF55120 10 348 3.16E-92 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_1327 df89c3eba30978492afb3b645580f551 367 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 83 96 - T 14-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 Thimo_3575 e2c6a6ab4f8c8dfa3496023659a6786a 260 Gene3D G3DSA:3.40.50.150 67 233 6.1E-8 T 14-10-2018 Thimo_3575 e2c6a6ab4f8c8dfa3496023659a6786a 260 SUPERFAMILY SSF53335 98 187 1.38E-11 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1481 e6bb070c3c2fa2715dde933c5257fc12 247 Pfam PF13098 Thioredoxin-like domain 119 241 1.2E-25 T 14-10-2018 IPR012336 Thioredoxin-like fold Thimo_1481 e6bb070c3c2fa2715dde933c5257fc12 247 SUPERFAMILY SSF52833 101 244 5.86E-36 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_1481 e6bb070c3c2fa2715dde933c5257fc12 247 SUPERFAMILY SSF54423 32 87 3.92E-12 T 14-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 Thimo_1481 e6bb070c3c2fa2715dde933c5257fc12 247 Gene3D G3DSA:3.10.450.70 29 87 1.6E-15 T 14-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 Thimo_1481 e6bb070c3c2fa2715dde933c5257fc12 247 Gene3D G3DSA:3.40.30.10 88 245 2.0E-46 T 14-10-2018 Thimo_1481 e6bb070c3c2fa2715dde933c5257fc12 247 Pfam PF10411 Disulfide bond isomerase protein N-terminus 35 88 7.9E-19 T 14-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Thimo_2990 b502ff5ea5455297550162b5d67cb616 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 1.9E-14 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2990 b502ff5ea5455297550162b5d67cb616 64 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 23 41 - T 14-10-2018 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 Thimo_2990 b502ff5ea5455297550162b5d67cb616 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 3.6E-6 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2990 b502ff5ea5455297550162b5d67cb616 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 3.6E-6 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2990 b502ff5ea5455297550162b5d67cb616 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 3.6E-6 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2990 b502ff5ea5455297550162b5d67cb616 64 SUPERFAMILY SSF56918 1 46 2.88E-13 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2990 b502ff5ea5455297550162b5d67cb616 64 Gene3D G3DSA:4.10.220.20 1 55 5.2E-19 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_1150 d81a6333230b82ee7d4bcf93e6549979 599 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 544 560 - T 14-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 Thimo_1150 d81a6333230b82ee7d4bcf93e6549979 599 SUPERFAMILY SSF116726 303 391 5.62E-17 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1150 d81a6333230b82ee7d4bcf93e6549979 599 Pfam PF02080 TrkA-C domain 317 377 1.2E-7 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Thimo_1150 d81a6333230b82ee7d4bcf93e6549979 599 Pfam PF02080 TrkA-C domain 226 292 1.5E-11 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Thimo_1150 d81a6333230b82ee7d4bcf93e6549979 599 SUPERFAMILY SSF116726 219 299 7.85E-17 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1150 d81a6333230b82ee7d4bcf93e6549979 599 Pfam PF03600 Citrate transporter 24 543 1.4E-48 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Thimo_1150 d81a6333230b82ee7d4bcf93e6549979 599 Gene3D G3DSA:3.30.70.1450 314 386 3.2E-12 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1150 d81a6333230b82ee7d4bcf93e6549979 599 Gene3D G3DSA:3.30.70.1450 222 296 3.6E-14 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 Gene3D G3DSA:1.10.150.20 7 51 2.5E-5 T 14-10-2018 Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 Gene3D G3DSA:3.40.50.300 467 639 1.3E-48 T 14-10-2018 Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 Pfam PF17191 RecG wedge domain 20 176 4.2E-15 T 14-10-2018 IPR033454 RecG, wedge domain Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 SUPERFAMILY SSF52540 191 463 3.96E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 Pfam PF00271 Helicase conserved C-terminal domain 490 597 2.0E-14 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 Pfam PF00270 DEAD/DEAH box helicase 303 441 2.0E-14 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 SMART SM00490 514 598 1.2E-17 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 SUPERFAMILY SSF52540 300 659 9.78E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 Gene3D G3DSA:2.40.50.140 53 144 1.5E-9 T 14-10-2018 Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 SUPERFAMILY SSF50249 15 180 1.61E-34 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 Gene3D G3DSA:3.40.50.300 222 460 3.5E-77 T 14-10-2018 Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 34 673 4.3E-211 T 14-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 Thimo_1044 818ba004f0cd03e0206081aaa70e1ccf 702 SMART SM00487 275 469 5.0E-27 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_0617 b5cdc961e5e3f60a4d702d54d04f7109 282 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 112 278 1.1E-24 T 14-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 Thimo_0617 b5cdc961e5e3f60a4d702d54d04f7109 282 TIGRFAM TIGR01334 modD: modD protein 9 279 8.1E-82 T 14-10-2018 IPR006242 Putative pyrophosphorylase ModD GO:0016763 Thimo_0617 b5cdc961e5e3f60a4d702d54d04f7109 282 Gene3D G3DSA:3.90.1170.20 15 126 9.0E-57 T 14-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 Thimo_0617 b5cdc961e5e3f60a4d702d54d04f7109 282 Gene3D G3DSA:3.20.20.70 127 268 9.0E-57 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0617 b5cdc961e5e3f60a4d702d54d04f7109 282 SUPERFAMILY SSF51690 111 279 1.33E-33 T 14-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Thimo_0617 b5cdc961e5e3f60a4d702d54d04f7109 282 SUPERFAMILY SSF54675 5 110 2.16E-21 T 14-10-2018 Thimo_0617 b5cdc961e5e3f60a4d702d54d04f7109 282 PIRSF PIRSF006250 7 282 1.8E-51 T 14-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 Thimo_0617 b5cdc961e5e3f60a4d702d54d04f7109 282 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 22 109 2.0E-18 T 14-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Thimo_1524 6259d176aca0e6a9ffab01628edae99e 164 SUPERFAMILY SSF46609 27 75 1.06E-13 T 14-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_1524 6259d176aca0e6a9ffab01628edae99e 164 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 27 73 2.3E-9 T 14-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_1524 6259d176aca0e6a9ffab01628edae99e 164 Gene3D G3DSA:2.40.500.20 52 151 4.5E-22 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_1524 6259d176aca0e6a9ffab01628edae99e 164 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 66 136 1.2E-16 T 14-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_1524 6259d176aca0e6a9ffab01628edae99e 164 SUPERFAMILY SSF54719 70 140 4.19E-20 T 14-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 12 479 2.9E-260 T 14-10-2018 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 SUPERFAMILY SSF53807 7 479 8.57E-166 T 14-10-2018 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 62 467 5.4E-110 T 14-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 27 473 2.4E-197 T 14-10-2018 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 Gene3D G3DSA:3.40.50.1980 63 205 6.1E-223 T 14-10-2018 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 Gene3D G3DSA:3.40.50.1980 27 475 6.1E-223 T 14-10-2018 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 Gene3D G3DSA:3.40.50.1980 206 345 6.1E-223 T 14-10-2018 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 81 88 - T 14-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Thimo_3244 4bbe52b243438120aff516aba4458f34 494 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 152 166 - T 14-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Thimo_2839 eee5bf35f7b74c0aef726fcfd2059907 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 1.0E-7 T 14-10-2018 Thimo_2839 eee5bf35f7b74c0aef726fcfd2059907 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.957 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2839 eee5bf35f7b74c0aef726fcfd2059907 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 5.5E-21 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2839 eee5bf35f7b74c0aef726fcfd2059907 37 SUPERFAMILY SSF57840 1 37 1.23E-15 T 14-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2839 eee5bf35f7b74c0aef726fcfd2059907 37 Pfam PF00444 Ribosomal protein L36 1 37 4.1E-17 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2839 eee5bf35f7b74c0aef726fcfd2059907 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0330 f7a187b2fb96823097e9939b354e6fec 162 PIRSF PIRSF001467 1 162 4.3E-28 T 14-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 Thimo_0330 f7a187b2fb96823097e9939b354e6fec 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 1.7E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_0330 f7a187b2fb96823097e9939b354e6fec 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 1.7E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_0330 f7a187b2fb96823097e9939b354e6fec 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 1.7E-11 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_0330 f7a187b2fb96823097e9939b354e6fec 162 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 158 3.8E-49 T 14-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Thimo_0330 f7a187b2fb96823097e9939b354e6fec 162 SUPERFAMILY SSF50891 2 161 1.1E-58 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Thimo_0330 f7a187b2fb96823097e9939b354e6fec 162 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 14-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Thimo_0330 f7a187b2fb96823097e9939b354e6fec 162 Gene3D G3DSA:2.40.100.10 1 161 3.8E-66 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Thimo_2381 0754a4b37cf2d87830b9686faff9fb4a 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 303 9.9E-39 T 14-10-2018 IPR020801 Polyketide synthase, acyl transferase domain Thimo_2381 0754a4b37cf2d87830b9686faff9fb4a 314 Gene3D G3DSA:3.40.366.10 7 285 4.3E-98 T 14-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 Thimo_2381 0754a4b37cf2d87830b9686faff9fb4a 314 Gene3D G3DSA:3.30.70.250 126 198 4.3E-98 T 14-10-2018 Thimo_2381 0754a4b37cf2d87830b9686faff9fb4a 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 5 291 4.0E-103 T 14-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Thimo_2381 0754a4b37cf2d87830b9686faff9fb4a 314 SUPERFAMILY SSF55048 129 198 3.01E-14 T 14-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Thimo_2381 0754a4b37cf2d87830b9686faff9fb4a 314 PIRSF PIRSF000446 1 312 1.1E-106 T 14-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Thimo_2381 0754a4b37cf2d87830b9686faff9fb4a 314 Pfam PF00698 Acyl transferase domain 7 279 2.2E-41 T 14-10-2018 IPR014043 Acyl transferase Thimo_2381 0754a4b37cf2d87830b9686faff9fb4a 314 SUPERFAMILY SSF52151 5 311 2.17E-75 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_1747 4320d28d1b637c0cd4ffc4f803313b69 348 SMART SM00382 21 165 3.6E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1747 4320d28d1b637c0cd4ffc4f803313b69 348 Gene3D G3DSA:3.40.50.300 12 165 1.1E-21 T 14-10-2018 Thimo_1747 4320d28d1b637c0cd4ffc4f803313b69 348 SUPERFAMILY SSF52540 22 160 1.04E-17 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1747 4320d28d1b637c0cd4ffc4f803313b69 348 Pfam PF07728 AAA domain (dynein-related subfamily) 24 120 2.5E-8 T 14-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Thimo_1726 86b386f965c8567396d4e69c4e6bb66f 204 Pfam PF01292 Prokaryotic cytochrome b561 22 197 2.2E-20 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_1726 86b386f965c8567396d4e69c4e6bb66f 204 Gene3D G3DSA:1.20.950.20 15 185 1.4E-16 T 14-10-2018 Thimo_1726 86b386f965c8567396d4e69c4e6bb66f 204 SUPERFAMILY SSF81342 18 200 1.7E-34 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 PRINTS PR01249 Ribosomal protein L31 signature 31 46 5.8E-23 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.8E-23 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 PRINTS PR01249 Ribosomal protein L31 signature 46 64 5.8E-23 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 66 29.682 T 14-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 9.7E-36 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 SUPERFAMILY SSF143800 1 65 1.37E-28 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 Gene3D G3DSA:2.30.170.50 1 66 2.9E-35 T 14-10-2018 Thimo_0079 d43c68174bcdf4e6356a478eda593ee8 66 Pfam PF01197 Ribosomal protein L31 1 65 2.0E-34 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2373 3b045b291d68a1767d4d4322089b4bb5 118 Gene3D G3DSA:2.40.10.220 4 118 1.7E-43 T 14-10-2018 Thimo_2373 3b045b291d68a1767d4d4322089b4bb5 118 Pfam PF07238 PilZ domain 16 105 1.5E-9 T 14-10-2018 IPR009875 PilZ domain GO:0035438 Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 SUPERFAMILY SSF52540 144 351 4.35E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 Gene3D G3DSA:3.40.50.300 1 203 4.8E-78 T 14-10-2018 Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 SUPERFAMILY SSF52540 1 207 1.03E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 SMART SM00487 20 220 3.2E-62 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 Pfam PF00270 DEAD/DEAH box helicase 25 193 3.8E-52 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 Gene3D G3DSA:3.40.50.300 204 369 4.1E-44 T 14-10-2018 Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 Pfam PF00271 Helicase conserved C-terminal domain 231 337 2.0E-24 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 SMART SM00490 256 337 1.8E-28 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1922 e0f0a0d8402b88b711cb28b2ea3e8e44 417 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 14-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Thimo_2024 e13737f7fd717fe818bdc0c0472c09c7 489 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 287 306 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_2024 e13737f7fd717fe818bdc0c0472c09c7 489 SUPERFAMILY SSF53383 76 487 6.4E-55 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2024 e13737f7fd717fe818bdc0c0472c09c7 489 Pfam PF00266 Aminotransferase class-V 103 413 3.3E-28 T 14-10-2018 IPR000192 Aminotransferase class V domain Thimo_2024 e13737f7fd717fe818bdc0c0472c09c7 489 Gene3D G3DSA:3.40.640.10 104 370 5.7E-59 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2024 e13737f7fd717fe818bdc0c0472c09c7 489 Gene3D G3DSA:3.90.1150.10 91 476 5.7E-59 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2832 313e82ddd8cf90013adaebd80aa496ac 253 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 9 244 7.5E-67 T 14-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase Thimo_2832 313e82ddd8cf90013adaebd80aa496ac 253 SUPERFAMILY SSF101852 163 246 1.27E-20 T 14-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal Thimo_2832 313e82ddd8cf90013adaebd80aa496ac 253 SUPERFAMILY SSF102522 8 148 1.96E-39 T 14-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal Thimo_2832 313e82ddd8cf90013adaebd80aa496ac 253 Gene3D G3DSA:2.40.30.90 160 247 1.7E-23 T 14-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal Thimo_2832 313e82ddd8cf90013adaebd80aa496ac 253 Gene3D G3DSA:3.40.50.10790 1 154 5.6E-41 T 14-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal Thimo_2832 313e82ddd8cf90013adaebd80aa496ac 253 PIRSF PIRSF006779 5 248 5.2E-46 T 14-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 225 304 3.1E-32 T 14-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 62 205 1.3E-27 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 Gene3D G3DSA:4.10.480.10 227 337 7.4E-39 T 14-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 38 0.0016 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PIRSF PIRSF000310 5 351 9.6E-126 T 14-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 SUPERFAMILY SSF56770 49 307 2.92E-79 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 6 317 2.3E-123 T 14-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 186 209 6.0E-73 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 157 181 6.0E-73 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 212 229 6.0E-73 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 230 248 6.0E-73 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 282 295 6.0E-73 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 47 69 6.0E-73 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 70 94 6.0E-73 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 254 280 6.0E-73 T 14-10-2018 Thimo_0774 2856474f302cc39316395d8b6c60bcf1 354 Gene3D G3DSA:3.40.50.700 46 224 1.6E-59 T 14-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Thimo_1597 fcc1be7a547303a22816bf0bafd3c6dc 518 TIGRFAM TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase 2 495 2.7E-202 T 14-10-2018 IPR022489 Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 Thimo_1597 fcc1be7a547303a22816bf0bafd3c6dc 518 SUPERFAMILY SSF52540 303 479 1.44E-19 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1597 fcc1be7a547303a22816bf0bafd3c6dc 518 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 271 494 1.2E-81 T 14-10-2018 IPR022488 Polyphosphate kinase-2-related Thimo_1597 fcc1be7a547303a22816bf0bafd3c6dc 518 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 12 233 2.8E-47 T 14-10-2018 IPR022488 Polyphosphate kinase-2-related Thimo_1597 fcc1be7a547303a22816bf0bafd3c6dc 518 Gene3D G3DSA:3.40.50.300 1 236 5.7E-68 T 14-10-2018 Thimo_1597 fcc1be7a547303a22816bf0bafd3c6dc 518 Gene3D G3DSA:3.40.50.300 248 497 1.0E-97 T 14-10-2018 Thimo_1597 fcc1be7a547303a22816bf0bafd3c6dc 518 SUPERFAMILY SSF52540 40 222 1.78E-11 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 SUPERFAMILY SSF54631 304 404 1.17E-5 T 14-10-2018 Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 SUPERFAMILY SSF141868 26 249 6.93E-59 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 SMART SM00052 7 252 4.3E-36 T 14-10-2018 IPR001633 EAL domain Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 Pfam PF00571 CBS domain 286 333 5.5E-5 T 14-10-2018 IPR000644 CBS domain Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 Gene3D G3DSA:3.20.20.450 18 260 2.2E-62 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 Pfam PF00563 EAL domain 24 247 4.1E-52 T 14-10-2018 IPR001633 EAL domain Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 SMART SM00267 400 556 7.6E-4 T 14-10-2018 IPR000160 GGDEF domain Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 SUPERFAMILY SSF55073 418 520 1.26E-15 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 Pfam PF00990 Diguanylate cyclase, GGDEF domain 417 497 5.8E-9 T 14-10-2018 IPR000160 GGDEF domain Thimo_0515 d6f18016ab903b8e57bb985da2073e1a 656 Gene3D G3DSA:3.30.70.270 404 589 5.4E-17 T 14-10-2018 Thimo_2352 b349de88b7eaed650b232d079894776e 243 SUPERFAMILY SSF54862 86 217 4.02E-35 T 14-10-2018 Thimo_2352 b349de88b7eaed650b232d079894776e 243 SMART SM00929 94 134 1.2E-15 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2352 b349de88b7eaed650b232d079894776e 243 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 94 133 1.8E-15 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2352 b349de88b7eaed650b232d079894776e 243 Gene3D G3DSA:3.10.20.740 12 134 4.8E-39 T 14-10-2018 Thimo_2352 b349de88b7eaed650b232d079894776e 243 SUPERFAMILY SSF54292 13 85 1.14E-19 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Thimo_2352 b349de88b7eaed650b232d079894776e 243 Gene3D G3DSA:3.30.70.20 137 219 6.2E-23 T 14-10-2018 Thimo_2352 b349de88b7eaed650b232d079894776e 243 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 201 212 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_2352 b349de88b7eaed650b232d079894776e 243 Pfam PF00037 4Fe-4S binding domain 199 216 4.1E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_2352 b349de88b7eaed650b232d079894776e 243 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 42 59 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2352 b349de88b7eaed650b232d079894776e 243 PIRSF PIRSF000309 10 243 3.1E-105 T 14-10-2018 IPR016214 NAD-reducing hydrogenase, HoxS gamma subunit MetaCyc: PWY-5382|MetaCyc: PWY-6758 Thimo_2352 b349de88b7eaed650b232d079894776e 243 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 11 87 8.8E-20 T 14-10-2018 Thimo_2000 7f6a701312c1a3e8107f4249ba8ed42c 270 Pfam PF13614 AAA domain 3 166 1.4E-21 T 14-10-2018 IPR025669 AAA domain Thimo_2000 7f6a701312c1a3e8107f4249ba8ed42c 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 267 1.7E-110 T 14-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 Thimo_2000 7f6a701312c1a3e8107f4249ba8ed42c 270 PIRSF PIRSF003092 1 270 2.7E-91 T 14-10-2018 IPR025501 ATP binding protein MinD Thimo_2000 7f6a701312c1a3e8107f4249ba8ed42c 270 Gene3D G3DSA:3.40.50.300 1 259 2.1E-71 T 14-10-2018 Thimo_2000 7f6a701312c1a3e8107f4249ba8ed42c 270 SUPERFAMILY SSF52540 2 268 2.56E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1991 50c12b4c595b6cbdfcdc84851d00126e 75 Gene3D G3DSA:1.10.10.10 6 69 4.2E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1991 50c12b4c595b6cbdfcdc84851d00126e 75 Pfam PF04255 Protein of unknown function (DUF433) 7 62 9.7E-27 T 14-10-2018 IPR007367 Protein of unknown function DUF433 Thimo_1991 50c12b4c595b6cbdfcdc84851d00126e 75 SUPERFAMILY SSF46689 3 64 1.79E-21 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3124 1979aae9b03770456db45fad26037b01 154 Pfam PF01575 MaoC like domain 17 114 1.3E-8 T 14-10-2018 IPR002539 MaoC-like dehydratase domain Thimo_3124 1979aae9b03770456db45fad26037b01 154 Gene3D G3DSA:3.10.129.10 5 147 3.7E-24 T 14-10-2018 Thimo_3124 1979aae9b03770456db45fad26037b01 154 SUPERFAMILY SSF54637 12 139 5.98E-23 T 14-10-2018 IPR029069 HotDog domain superfamily Thimo_2377 e82bf8d6bfe6695e5d8646dc533a09a2 291 Gene3D G3DSA:3.20.10.10 128 283 1.5E-45 T 14-10-2018 Thimo_2377 e82bf8d6bfe6695e5d8646dc533a09a2 291 SUPERFAMILY SSF56752 20 271 2.49E-61 T 14-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 Thimo_2377 e82bf8d6bfe6695e5d8646dc533a09a2 291 Pfam PF01063 Amino-transferase class IV 40 262 3.0E-39 T 14-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 Thimo_2377 e82bf8d6bfe6695e5d8646dc533a09a2 291 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 19 267 8.8E-78 T 14-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 Thimo_2377 e82bf8d6bfe6695e5d8646dc533a09a2 291 Gene3D G3DSA:3.30.470.10 18 124 1.4E-29 T 14-10-2018 Thimo_3758 5d817f36c214ef525a8b3782aa162a0b 215 PIRSF PIRSF003299 1 214 7.1E-56 T 14-10-2018 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 Thimo_3758 5d817f36c214ef525a8b3782aa162a0b 215 SUPERFAMILY SSF54427 78 212 7.89E-34 T 14-10-2018 IPR032710 NTF2-like domain superfamily Thimo_3758 5d817f36c214ef525a8b3782aa162a0b 215 Gene3D G3DSA:3.10.450.230 75 215 2.0E-38 T 14-10-2018 Thimo_3758 5d817f36c214ef525a8b3782aa162a0b 215 Pfam PF04335 VirB8 protein 7 212 6.2E-51 T 14-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 Thimo_0735 0eb9cbc49c57d0426221dedb409e15bc 285 SUPERFAMILY SSF55811 96 262 2.03E-18 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_0735 0eb9cbc49c57d0426221dedb409e15bc 285 Pfam PF15916 Domain of unknown function (DUF4743) 3 117 2.2E-16 T 14-10-2018 IPR031804 Domain of unknown function DUF4743 Thimo_0735 0eb9cbc49c57d0426221dedb409e15bc 285 Gene3D G3DSA:3.90.79.10 115 277 5.6E-87 T 14-10-2018 Thimo_0735 0eb9cbc49c57d0426221dedb409e15bc 285 Pfam PF00293 NUDIX domain 131 243 1.8E-6 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_0735 0eb9cbc49c57d0426221dedb409e15bc 285 Gene3D G3DSA:3.30.750.160 20 202 5.6E-87 T 14-10-2018 Thimo_2217 4274da06b5bad8d2f443b06c0797408e 87 Pfam PF11154 Protein of unknown function (DUF2934) 45 80 7.6E-14 T 14-10-2018 IPR021327 Protein of unknown function DUF2934 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 Pfam PF01565 FAD binding domain 30 157 4.5E-18 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 SUPERFAMILY SSF56176 15 201 3.02E-36 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 16 292 3.2E-54 T 14-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 296 86.23 T 14-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 Gene3D G3DSA:3.30.465.10 84 208 2.8E-30 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 195 290 5.6E-30 T 14-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 Gene3D G3DSA:3.30.43.10 2 78 6.1E-23 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 SUPERFAMILY SSF56194 189 292 2.22E-35 T 14-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3109 4da51ac371894966bf1b40e50ce1a799 296 Gene3D G3DSA:3.90.78.10 209 295 1.2E-32 T 14-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3332 63cf9f1871b94b56d82128bff81a1d02 216 SUPERFAMILY SSF53098 13 205 9.02E-53 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_3332 63cf9f1871b94b56d82128bff81a1d02 216 TIGRFAM TIGR01298 RNaseT: ribonuclease T 12 205 2.6E-91 T 14-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 Thimo_3332 63cf9f1871b94b56d82128bff81a1d02 216 Pfam PF00929 Exonuclease 21 195 6.6E-29 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_3332 63cf9f1871b94b56d82128bff81a1d02 216 Hamap MF_00157 Ribonuclease T [rnt]. 1 216 90.362 T 14-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 Thimo_3332 63cf9f1871b94b56d82128bff81a1d02 216 Gene3D G3DSA:3.30.420.10 11 210 1.5E-51 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_3332 63cf9f1871b94b56d82128bff81a1d02 216 SMART SM00479 19 204 1.0E-23 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_2189 eb302583336500146592f6b98c047476 545 Pfam PF00795 Carbon-nitrogen hydrolase 5 240 8.6E-25 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Thimo_2189 eb302583336500146592f6b98c047476 545 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 1 545 29.814 T 14-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Thimo_2189 eb302583336500146592f6b98c047476 545 PIRSF PIRSF006630 1 545 1.5E-193 T 14-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Thimo_2189 eb302583336500146592f6b98c047476 545 TIGRFAM TIGR00552 nadE: NAD+ synthetase 281 524 4.5E-60 T 14-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 Thimo_2189 eb302583336500146592f6b98c047476 545 SUPERFAMILY SSF52402 269 531 5.07E-77 T 14-10-2018 Thimo_2189 eb302583336500146592f6b98c047476 545 Gene3D G3DSA:3.40.50.620 271 545 2.7E-116 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2189 eb302583336500146592f6b98c047476 545 Gene3D G3DSA:3.60.110.10 1 262 1.2E-90 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_2189 eb302583336500146592f6b98c047476 545 SUPERFAMILY SSF56317 1 239 1.7E-60 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_2189 eb302583336500146592f6b98c047476 545 Pfam PF02540 NAD synthase 274 522 8.9E-73 T 14-10-2018 IPR022310 NAD/GMP synthase Thimo_1043 8a32522f6875fd2a47e63eba88eb9159 374 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 54 346 8.0E-105 T 14-10-2018 IPR011757 Lytic transglycosylase MltB Thimo_1043 8a32522f6875fd2a47e63eba88eb9159 374 Gene3D G3DSA:1.10.8.350 53 223 4.7E-106 T 14-10-2018 Thimo_1043 8a32522f6875fd2a47e63eba88eb9159 374 Pfam PF13406 Transglycosylase SLT domain 60 344 3.7E-94 T 14-10-2018 IPR031304 Transglycosylase SLT domain 2 Thimo_1043 8a32522f6875fd2a47e63eba88eb9159 374 SUPERFAMILY SSF53955 57 347 2.25E-87 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_1043 8a32522f6875fd2a47e63eba88eb9159 374 Gene3D G3DSA:1.10.530.10 90 345 4.7E-106 T 14-10-2018 Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 Gene3D G3DSA:1.10.287.110 48 170 3.8E-37 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 Pfam PF00226 DnaJ domain 51 112 2.7E-26 T 14-10-2018 IPR001623 DnaJ domain Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 Pfam PF01556 DnaJ C terminal domain 179 331 5.2E-34 T 14-10-2018 IPR002939 Chaperone DnaJ, C-terminal Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 SUPERFAMILY SSF46565 46 118 2.75E-32 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 Gene3D G3DSA:2.60.260.20 171 254 3.2E-20 T 14-10-2018 Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 SMART SM00271 50 107 6.5E-30 T 14-10-2018 IPR001623 DnaJ domain Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 PRINTS PR00625 DnaJ domain signature 87 107 1.3E-23 T 14-10-2018 IPR001623 DnaJ domain Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 PRINTS PR00625 DnaJ domain signature 53 71 1.3E-23 T 14-10-2018 IPR001623 DnaJ domain Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 PRINTS PR00625 DnaJ domain signature 71 86 1.3E-23 T 14-10-2018 IPR001623 DnaJ domain Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 PRINTS PR00625 DnaJ domain signature 107 126 1.3E-23 T 14-10-2018 IPR001623 DnaJ domain Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 Gene3D G3DSA:2.60.260.20 255 331 9.8E-28 T 14-10-2018 Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 ProSitePatterns PS00636 Nt-dnaJ domain signature. 92 111 - T 14-10-2018 IPR018253 DnaJ domain, conserved site Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 SUPERFAMILY SSF49493 260 342 1.96E-18 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Thimo_1941 865cd6047c7d49c5b09130b5dd767a71 359 SUPERFAMILY SSF49493 170 266 4.32E-18 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Thimo_0099 4e436c24e52cdb42e76e59985d93a48a 265 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 26 190 4.6E-32 T 14-10-2018 IPR010239 Conserved hypothetical protein CHP02001 Thimo_0099 4e436c24e52cdb42e76e59985d93a48a 265 SUPERFAMILY SSF56925 69 198 4.97E-5 T 14-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Thimo_0099 4e436c24e52cdb42e76e59985d93a48a 265 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 6 263 3.3E-38 T 14-10-2018 IPR010239 Conserved hypothetical protein CHP02001 Thimo_3370 f414e4a25ee72372f33c582ae6da0823 445 SUPERFAMILY SSF141868 180 420 1.26E-33 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_3370 f414e4a25ee72372f33c582ae6da0823 445 SMART SM00052 174 424 1.1E-8 T 14-10-2018 IPR001633 EAL domain Thimo_3370 f414e4a25ee72372f33c582ae6da0823 445 Gene3D G3DSA:3.20.20.450 176 427 1.5E-39 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_3370 f414e4a25ee72372f33c582ae6da0823 445 Pfam PF00563 EAL domain 182 419 2.7E-37 T 14-10-2018 IPR001633 EAL domain Thimo_2606 0180d4c32912ec69a73c460a202317dc 115 SUPERFAMILY SSF54913 2 101 2.0E-14 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_2606 0180d4c32912ec69a73c460a202317dc 115 Gene3D G3DSA:3.30.70.120 2 100 4.9E-12 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 SUPERFAMILY SSF51905 5 477 3.0E-64 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 SUPERFAMILY SSF46977 486 619 2.35E-42 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 SUPERFAMILY SSF56425 239 382 9.52E-55 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 Pfam PF02910 Fumarate reductase flavoprotein C-term 499 614 4.5E-8 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 Gene3D G3DSA:3.90.700.10 264 393 4.9E-261 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 Gene3D G3DSA:3.50.50.90 10 617 4.9E-261 T 14-10-2018 Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 Pfam PF00890 FAD binding domain 12 241 2.5E-18 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 TIGRFAM TIGR02061 aprA: adenylylsulfate reductase, alpha subunit 12 618 0.0 T 14-10-2018 IPR011803 Adenylylsulphate reductase, alpha subunit KEGG: 00920+1.8.99.2|MetaCyc: PWY-5278|MetaCyc: PWY-5279 Thimo_1219 b31974af330304264bdb0b4b3f2f30d9 629 PIRSF PIRSF000171 1 623 2.7E-242 T 14-10-2018 Thimo_3483 ac93b59c46154933a336c52680e6f802 61 Pfam PF13617 YnbE-like lipoprotein 5 59 1.2E-27 T 14-10-2018 IPR025985 YnbE-like lipoprotein Thimo_3483 ac93b59c46154933a336c52680e6f802 61 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 17 61 5.0E-12 T 14-10-2018 Thimo_2496 72b7c78ed465e6ea826c6ab75c62374f 301 Gene3D G3DSA:3.30.1150.10 127 301 6.4E-30 T 14-10-2018 Thimo_2496 72b7c78ed465e6ea826c6ab75c62374f 301 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 222 300 8.5E-19 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 Thimo_2496 72b7c78ed465e6ea826c6ab75c62374f 301 PRINTS PR01374 Gram-negative bacterial tonB protein signature 238 256 1.6E-7 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Thimo_2496 72b7c78ed465e6ea826c6ab75c62374f 301 PRINTS PR01374 Gram-negative bacterial tonB protein signature 138 148 1.6E-7 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Thimo_2496 72b7c78ed465e6ea826c6ab75c62374f 301 PRINTS PR01374 Gram-negative bacterial tonB protein signature 217 238 1.6E-7 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Thimo_2496 72b7c78ed465e6ea826c6ab75c62374f 301 SUPERFAMILY SSF74653 133 300 9.03E-24 T 14-10-2018 Thimo_2496 72b7c78ed465e6ea826c6ab75c62374f 301 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 223 300 3.0E-21 T 14-10-2018 IPR006260 TonB/TolA, C-terminal Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 SMART SM00387 436 528 4.6E-10 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 SUPERFAMILY SSF55874 414 526 2.23E-19 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 160 1.9E-17 T 14-10-2018 IPR000014 PAS domain Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 186 307 2.6E-20 T 14-10-2018 IPR000014 PAS domain Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 SMART SM00086 113 153 0.18 T 14-10-2018 IPR001610 PAC motif Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 SMART SM00086 261 303 0.047 T 14-10-2018 IPR001610 PAC motif Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 SMART SM00091 190 256 0.0032 T 14-10-2018 IPR000014 PAS domain Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 SMART SM00091 40 107 2.4E-6 T 14-10-2018 IPR000014 PAS domain Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 Gene3D G3DSA:3.30.450.20 180 317 9.3E-27 T 14-10-2018 Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 SUPERFAMILY SSF55785 179 301 1.92E-23 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 SUPERFAMILY SSF55785 32 151 6.11E-19 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 Pfam PF08448 PAS fold 198 304 1.1E-18 T 14-10-2018 IPR013656 PAS fold-4 Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 Pfam PF07730 Histidine kinase 331 396 8.3E-10 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 Pfam PF00989 PAS fold 41 120 2.1E-7 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 439 527 1.1E-7 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 Gene3D G3DSA:3.30.565.10 409 526 5.3E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0374 92de10931cf347d3c41976e7fea84dfe 537 Gene3D G3DSA:3.30.450.20 30 179 3.4E-21 T 14-10-2018 Thimo_1449 8110fbe0599e8bfae83add89a5a468f2 418 SUPERFAMILY SSF52540 71 357 1.37E-20 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1449 8110fbe0599e8bfae83add89a5a468f2 418 Pfam PF13469 Sulfotransferase family 75 334 3.4E-23 T 14-10-2018 Thimo_1449 8110fbe0599e8bfae83add89a5a468f2 418 Gene3D G3DSA:3.40.50.300 58 379 2.5E-50 T 14-10-2018 Thimo_0826 a2fa008bbc2b738ec1397baf0c53190c 134 Gene3D G3DSA:2.170.150.70 4 118 2.4E-15 T 14-10-2018 Thimo_0826 a2fa008bbc2b738ec1397baf0c53190c 134 SUPERFAMILY SSF51316 5 133 8.58E-37 T 14-10-2018 IPR011057 Mss4-like superfamily Thimo_0826 a2fa008bbc2b738ec1397baf0c53190c 134 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 114 1.5E-18 T 14-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Thimo_3397 4247e223587ca7ea704b2f213cc9325c 522 Pfam PF01384 Phosphate transporter family 64 509 3.8E-105 T 14-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 Thimo_3639 ce370c1db36f493daeb46d21b0664dd8 410 Pfam PF12710 haloacid dehalogenase-like hydrolase 193 360 5.3E-27 T 14-10-2018 Thimo_3639 ce370c1db36f493daeb46d21b0664dd8 410 Gene3D G3DSA:3.30.70.260 3 81 2.3E-14 T 14-10-2018 Thimo_3639 ce370c1db36f493daeb46d21b0664dd8 410 Pfam PF13740 ACT domain 3 78 7.1E-27 T 14-10-2018 Thimo_3639 ce370c1db36f493daeb46d21b0664dd8 410 Gene3D G3DSA:3.40.50.1000 107 396 3.2E-88 T 14-10-2018 IPR023214 HAD superfamily Thimo_3639 ce370c1db36f493daeb46d21b0664dd8 410 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 177 395 4.3E-80 T 14-10-2018 Thimo_3639 ce370c1db36f493daeb46d21b0664dd8 410 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 192 362 3.4E-34 T 14-10-2018 Thimo_3639 ce370c1db36f493daeb46d21b0664dd8 410 SUPERFAMILY SSF55021 4 80 1.13E-12 T 14-10-2018 Thimo_3639 ce370c1db36f493daeb46d21b0664dd8 410 SUPERFAMILY SSF56784 191 397 1.04E-54 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0807 337f9669af113861b0db26ce0af5c3cf 134 SUPERFAMILY SSF54523 11 122 3.81E-23 T 14-10-2018 Thimo_0807 337f9669af113861b0db26ce0af5c3cf 134 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0807 337f9669af113861b0db26ce0af5c3cf 134 PRINTS PR00813 Bacterial general secretion pathway protein G signature 10 35 1.6E-8 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Thimo_0807 337f9669af113861b0db26ce0af5c3cf 134 PRINTS PR00813 Bacterial general secretion pathway protein G signature 46 64 1.6E-8 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Thimo_0807 337f9669af113861b0db26ce0af5c3cf 134 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 32 122 8.4E-13 T 14-10-2018 IPR031982 Type IV minor pilin ComP Thimo_0807 337f9669af113861b0db26ce0af5c3cf 134 Gene3D G3DSA:3.30.700.10 11 133 1.4E-23 T 14-10-2018 Thimo_0807 337f9669af113861b0db26ce0af5c3cf 134 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 30 1.2E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0807 337f9669af113861b0db26ce0af5c3cf 134 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 31 5.6E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_2735 3a52c44ed62a758d97c07ee00d163353 421 Gene3D G3DSA:2.30.42.10 345 420 7.6E-10 T 14-10-2018 Thimo_2735 3a52c44ed62a758d97c07ee00d163353 421 Pfam PF04536 TPM domain 38 159 2.5E-22 T 14-10-2018 IPR007621 TPM domain Thimo_2735 3a52c44ed62a758d97c07ee00d163353 421 Pfam PF13180 PDZ domain 350 414 1.6E-7 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_2735 3a52c44ed62a758d97c07ee00d163353 421 SUPERFAMILY SSF50156 349 416 3.02E-12 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_2735 3a52c44ed62a758d97c07ee00d163353 421 Gene3D G3DSA:3.10.310.50 24 169 8.1E-22 T 14-10-2018 Thimo_2735 3a52c44ed62a758d97c07ee00d163353 421 SMART SM00228 341 409 0.002 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0879 1957431e9bc3f68d5d2ad40154591f66 275 SUPERFAMILY SSF53474 7 270 8.11E-56 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0879 1957431e9bc3f68d5d2ad40154591f66 275 Gene3D G3DSA:3.40.50.1820 14 269 1.6E-68 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0879 1957431e9bc3f68d5d2ad40154591f66 275 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 16 269 33.961 T 14-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 Thimo_0879 1957431e9bc3f68d5d2ad40154591f66 275 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 23 269 3.0E-77 T 14-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 Thimo_0879 1957431e9bc3f68d5d2ad40154591f66 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 2.4E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0879 1957431e9bc3f68d5d2ad40154591f66 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 2.4E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0879 1957431e9bc3f68d5d2ad40154591f66 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 2.4E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0879 1957431e9bc3f68d5d2ad40154591f66 275 Pfam PF00561 alpha/beta hydrolase fold 23 257 6.4E-25 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0694 c71afc5db3147aef49c888f532dccb96 211 Pfam PF00092 von Willebrand factor type A domain 6 160 1.2E-10 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0694 c71afc5db3147aef49c888f532dccb96 211 PIRSF PIRSF020634 1 210 1.1E-64 T 14-10-2018 IPR011392 Tellurite resistance, TerY Thimo_0694 c71afc5db3147aef49c888f532dccb96 211 SUPERFAMILY SSF53300 4 161 7.79E-19 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0694 c71afc5db3147aef49c888f532dccb96 211 SMART SM00327 3 182 4.1E-9 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0694 c71afc5db3147aef49c888f532dccb96 211 Gene3D G3DSA:3.40.50.410 4 172 2.0E-16 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 14-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 SMART SM00344 3 113 3.3E-44 T 14-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 Gene3D G3DSA:1.10.10.10 4 55 1.7E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 SUPERFAMILY SSF46785 2 93 5.4E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 Gene3D G3DSA:3.30.70.920 56 141 9.6E-28 T 14-10-2018 Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 5.4E-19 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 5.4E-19 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 5.4E-19 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 SUPERFAMILY SSF54909 64 153 1.27E-20 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 3.3E-23 T 14-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Thimo_0709 626e69ac7f1b2511a53e124fbba8739d 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 49 2.2E-21 T 14-10-2018 Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 52 68 1.8E-27 T 14-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 128 143 1.8E-27 T 14-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 109 122 1.8E-27 T 14-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 9 26 1.8E-27 T 14-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 86 101 1.8E-27 T 14-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 9 154 2.1E-39 T 14-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 Gene3D G3DSA:3.40.50.2300 1 161 1.0E-57 T 14-10-2018 Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 SUPERFAMILY SSF52788 6 157 1.26E-52 T 14-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily Thimo_0530 ed42f1c5345eb48a2d110fb0db69fe1d 167 SMART SM00226 7 156 7.5E-53 T 14-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Thimo_0914 df1ee3ef9d4da0a8701b8dc14e5c4bb7 183 Pfam PF13328 HD domain 15 143 2.6E-20 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_0914 df1ee3ef9d4da0a8701b8dc14e5c4bb7 183 SMART SM00471 32 140 5.9E-5 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_0914 df1ee3ef9d4da0a8701b8dc14e5c4bb7 183 SUPERFAMILY SSF109604 9 173 1.92E-41 T 14-10-2018 Thimo_0914 df1ee3ef9d4da0a8701b8dc14e5c4bb7 183 Gene3D G3DSA:1.10.3210.10 7 181 7.3E-57 T 14-10-2018 Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 Gene3D G3DSA:3.40.50.80 110 240 5.1E-10 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 PIRSF PIRSF006816 188 295 1.1E-23 T 14-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 PIRSF PIRSF006816 9 147 5.9E-26 T 14-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 Gene3D G3DSA:2.10.240.10 249 290 1.4E-13 T 14-10-2018 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 SUPERFAMILY SSF52343 101 290 7.02E-21 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 Gene3D G3DSA:2.40.30.10 11 104 8.4E-25 T 14-10-2018 Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 Pfam PF00970 Oxidoreductase FAD-binding domain 28 104 1.7E-4 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 SUPERFAMILY SSF63380 14 106 2.87E-19 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Thimo_2558 4e03734d008f8d10ef709eb2b6313a20 295 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 249 289 2.5E-17 T 14-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Thimo_3415 f2563cf703527e1aa504b1270863f6f9 129 Pfam PF05168 HEPN domain 6 122 2.9E-13 T 14-10-2018 IPR007842 HEPN domain Thimo_3415 f2563cf703527e1aa504b1270863f6f9 129 Gene3D G3DSA:1.20.120.330 3 126 2.7E-24 T 14-10-2018 Thimo_3597 13f4e77437e4484b26275627d1bacc43 242 Gene3D G3DSA:3.60.15.10 1 109 2.4E-26 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3597 13f4e77437e4484b26275627d1bacc43 242 Pfam PF00753 Metallo-beta-lactamase superfamily 25 175 4.1E-11 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_3597 13f4e77437e4484b26275627d1bacc43 242 SUPERFAMILY SSF56281 11 238 7.08E-36 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3597 13f4e77437e4484b26275627d1bacc43 242 SMART SM00849 23 209 9.7E-10 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_3597 13f4e77437e4484b26275627d1bacc43 242 Gene3D G3DSA:3.60.15.10 126 240 7.0E-29 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 Gene3D G3DSA:3.40.50.720 7 252 1.3E-50 T 14-10-2018 Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 SUPERFAMILY SSF51735 5 247 1.75E-50 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 4.4E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 4.4E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 4.4E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.4E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 4.4E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 4.4E-21 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 Pfam PF00106 short chain dehydrogenase 8 198 7.0E-40 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3292 e914946593bab1613fdd2edc4e6aaf1d 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 Gene3D G3DSA:3.30.930.10 4 328 8.5E-95 T 14-10-2018 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 PRINTS PR00982 Lysyl-tRNA synthetase signature 34 44 4.4E-9 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 PRINTS PR00982 Lysyl-tRNA synthetase signature 211 227 4.4E-9 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 PRINTS PR00982 Lysyl-tRNA synthetase signature 100 117 4.4E-9 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 PRINTS PR00982 Lysyl-tRNA synthetase signature 82 95 4.4E-9 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 Pfam PF00152 tRNA synthetases class II (D, K and N) 9 140 5.3E-15 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 19 323 2.0E-114 T 14-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 SUPERFAMILY SSF55681 14 325 2.49E-71 T 14-10-2018 Thimo_2221 d9e6b865c336f19603cecb57ee473123 328 Pfam PF00152 tRNA synthetases class II (D, K and N) 212 325 1.2E-19 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_2953 71e4ef01f83592f9f934aa87ec1d861d 106 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 26 45 - T 14-10-2018 IPR020808 Bacterial microcompartments protein, conserved site Thimo_2953 71e4ef01f83592f9f934aa87ec1d861d 106 Gene3D G3DSA:3.30.70.1710 2 91 2.8E-36 T 14-10-2018 Thimo_2953 71e4ef01f83592f9f934aa87ec1d861d 106 SUPERFAMILY SSF143414 9 94 3.53E-28 T 14-10-2018 IPR037233 CcmK-like superfamily Thimo_2953 71e4ef01f83592f9f934aa87ec1d861d 106 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 9 70 2.0E-19 T 14-10-2018 Thimo_2953 71e4ef01f83592f9f934aa87ec1d861d 106 SMART SM00877 8 85 8.5E-31 T 14-10-2018 IPR000249 Microcompartment protein, bacteria Thimo_2953 71e4ef01f83592f9f934aa87ec1d861d 106 Pfam PF00936 BMC domain 9 85 9.3E-26 T 14-10-2018 IPR000249 Microcompartment protein, bacteria Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 PIRSF PIRSF000151 15 434 9.8E-176 T 14-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 22 433 41.798 T 14-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 Gene3D G3DSA:3.40.309.10 243 391 8.3E-163 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 340 361 - T 14-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 Gene3D G3DSA:3.40.605.10 29 430 8.3E-163 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 30 423 1.1E-145 T 14-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 Pfam PF00171 Aldehyde dehydrogenase family 23 299 8.4E-14 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 Pfam PF00171 Aldehyde dehydrogenase family 319 390 6.1E-7 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Thimo_1081 f9401424da43634f63bcc46fb1be8ad7 435 SUPERFAMILY SSF53720 22 433 2.49E-118 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Thimo_1647 ecb408d71317d864a0b16121d3c587a7 250 SUPERFAMILY SSF102705 3 249 9.03E-69 T 14-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Thimo_1647 ecb408d71317d864a0b16121d3c587a7 250 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 238 2.0E-49 T 14-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Thimo_1647 ecb408d71317d864a0b16121d3c587a7 250 Gene3D G3DSA:3.40.1390.30 8 237 5.4E-73 T 14-10-2018 Thimo_1647 ecb408d71317d864a0b16121d3c587a7 250 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 7 241 3.7E-45 T 14-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Thimo_1647 ecb408d71317d864a0b16121d3c587a7 250 Gene3D G3DSA:3.40.1390.30 98 221 5.4E-73 T 14-10-2018 Thimo_3656 66988c30f2b3bc19aef71864a48306ae 69 SUPERFAMILY SSF47473 9 57 4.7E-6 T 14-10-2018 IPR011992 EF-hand domain pair Thimo_3656 66988c30f2b3bc19aef71864a48306ae 69 Gene3D G3DSA:1.10.238.10 8 61 1.2E-9 T 14-10-2018 Thimo_3656 66988c30f2b3bc19aef71864a48306ae 69 ProSitePatterns PS00018 EF-hand calcium-binding domain. 41 53 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site Thimo_3656 66988c30f2b3bc19aef71864a48306ae 69 Pfam PF13202 EF hand 38 56 7.2E-5 T 14-10-2018 IPR002048 EF-hand domain GO:0005509 Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 Gene3D G3DSA:1.10.287.110 31 123 5.5E-16 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 Gene3D G3DSA:3.10.450.50 413 524 1.5E-6 T 14-10-2018 Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 SUPERFAMILY SSF54427 424 519 4.85E-8 T 14-10-2018 IPR032710 NTF2-like domain superfamily Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 PRINTS PR00625 DnaJ domain signature 62 77 6.1E-6 T 14-10-2018 IPR001623 DnaJ domain Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 PRINTS PR00625 DnaJ domain signature 80 100 6.1E-6 T 14-10-2018 IPR001623 DnaJ domain Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 PRINTS PR00625 DnaJ domain signature 44 62 6.1E-6 T 14-10-2018 IPR001623 DnaJ domain Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 SUPERFAMILY SSF46565 32 108 5.76E-17 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 Pfam PF00226 DnaJ domain 42 105 8.4E-14 T 14-10-2018 IPR001623 DnaJ domain Thimo_2663 533dd0243273b6e7001305930df6fbb7 540 SMART SM00271 41 100 1.0E-10 T 14-10-2018 IPR001623 DnaJ domain Thimo_1337 c0391993396f242c1e375e4092313cf4 1008 Gene3D G3DSA:1.25.40.10 841 1006 2.3E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1337 c0391993396f242c1e375e4092313cf4 1008 Gene3D G3DSA:3.40.50.300 188 370 1.0E-5 T 14-10-2018 Thimo_1337 c0391993396f242c1e375e4092313cf4 1008 Pfam PF08357 SEFIR domain 6 132 6.3E-14 T 14-10-2018 IPR013568 SEFIR domain Thimo_1337 c0391993396f242c1e375e4092313cf4 1008 Gene3D G3DSA:3.40.50.10140 5 135 3.6E-8 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_1337 c0391993396f242c1e375e4092313cf4 1008 SUPERFAMILY SSF52540 192 440 1.33E-5 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1337 c0391993396f242c1e375e4092313cf4 1008 Gene3D G3DSA:1.25.40.10 677 811 2.7E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1337 c0391993396f242c1e375e4092313cf4 1008 SUPERFAMILY SSF48452 683 814 1.1E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 Gene3D G3DSA:3.60.15.10 11 264 1.4E-81 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 Pfam PF00258 Flavodoxin 271 398 2.5E-11 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 SUPERFAMILY SSF56281 16 291 3.8E-50 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 PIRSF PIRSF005243 11 415 1.2E-125 T 14-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 Gene3D G3DSA:3.40.50.360 268 418 1.2E-42 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 Pfam PF00753 Metallo-beta-lactamase superfamily 48 186 6.9E-13 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 SUPERFAMILY SSF52218 268 411 1.17E-35 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 SMART SM00849 47 240 1.5E-37 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_3250 2f4791974b9e2993b2154620f6b9f5da 427 ProSitePatterns PS00201 Flavodoxin signature. 271 287 - T 14-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Thimo_0156 066b2f251a88e22e19b031ce4bb997a6 107 SUPERFAMILY SSF89360 1 93 1.18E-13 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Thimo_0156 066b2f251a88e22e19b031ce4bb997a6 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 81 2.9E-7 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Thimo_0156 066b2f251a88e22e19b031ce4bb997a6 107 Gene3D G3DSA:2.60.300.12 1 102 9.9E-43 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Thimo_1678 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 Pfam PF01597 Glycine cleavage H-protein 8 128 1.1E-47 T 14-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate Thimo_1678 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 SUPERFAMILY SSF51230 4 128 2.88E-45 T 14-10-2018 IPR011053 Single hybrid motif Thimo_1678 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 Gene3D G3DSA:2.40.50.100 2 129 6.7E-52 T 14-10-2018 Thimo_1678 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 4 129 3.3E-52 T 14-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Thimo_1678 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Thimo_1678 d10a7258eb3a61d9e6d3fae8f1a2e77d 130 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 41.703 T 14-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Thimo_2401 940ea8a3a5541390fb1b080c9daf67c8 470 SUPERFAMILY SSF103473 53 148 1.14E-5 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_2401 940ea8a3a5541390fb1b080c9daf67c8 470 Gene3D G3DSA:3.30.1330.60 329 468 8.8E-31 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_2401 940ea8a3a5541390fb1b080c9daf67c8 470 Gene3D G3DSA:2.30.30.40 227 291 1.5E-11 T 14-10-2018 Thimo_2401 940ea8a3a5541390fb1b080c9daf67c8 470 SMART SM00287 225 292 0.002 T 14-10-2018 IPR003646 SH3-like domain, bacterial-type Thimo_2401 940ea8a3a5541390fb1b080c9daf67c8 470 Pfam PF08239 Bacterial SH3 domain 235 288 3.1E-10 T 14-10-2018 IPR003646 SH3-like domain, bacterial-type Thimo_2401 940ea8a3a5541390fb1b080c9daf67c8 470 Pfam PF00691 OmpA family 362 459 2.9E-16 T 14-10-2018 IPR006665 OmpA-like domain Thimo_2401 940ea8a3a5541390fb1b080c9daf67c8 470 SUPERFAMILY SSF103088 352 465 4.58E-27 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 SUPERFAMILY SSF52016 631 884 1.41E-84 T 14-10-2018 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 ProSitePatterns PS00450 Aconitase family signature 1. 423 439 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 Pfam PF00694 Aconitase C-terminal domain 687 813 3.8E-46 T 14-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 Gene3D G3DSA:1.10.1440.20 587 647 5.7E-18 T 14-10-2018 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 140 153 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 273 286 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 211 226 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 427 438 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 164 172 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 489 502 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 197 210 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 287 300 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 PRINTS PR00415 Aconitase family signature 367 381 2.1E-40 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 Gene3D G3DSA:3.30.499.20 5 367 1.4E-154 T 14-10-2018 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 Gene3D G3DSA:3.30.499.10 368 586 1.0E-93 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 Pfam PF00330 Aconitase family (aconitate hydratase) 71 558 1.6E-178 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 Gene3D G3DSA:3.20.19.10 648 886 5.6E-105 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 SUPERFAMILY SSF53732 4 623 4.84E-219 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Thimo_1469 039625465d1dcade2cec0dfbfc23c07c 886 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 30 884 0.0 T 14-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 1 163 24.639 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Pfam PF14697 4Fe-4S dicluster domain 104 158 3.9E-16 T 14-10-2018 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 4 181 5.6E-77 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Gene3D G3DSA:1.10.15.40 35 80 5.3E-11 T 14-10-2018 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Gene3D G3DSA:3.30.70.20 81 170 2.3E-20 T 14-10-2018 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 111 122 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 Pfam PF04060 Putative Fe-S cluster 41 73 1.0E-16 T 14-10-2018 IPR007202 4Fe-4S domain GO:0051536 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 PIRSF PIRSF005784 1 184 2.5E-81 T 14-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 SUPERFAMILY SSF54862 34 170 1.1E-27 T 14-10-2018 Thimo_0961 25f8e9ccaa50fddea56e73bd1a2f0b21 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 141 152 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 Pfam PF00990 Diguanylate cyclase, GGDEF domain 267 426 6.0E-50 T 14-10-2018 IPR000160 GGDEF domain Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 SUPERFAMILY SSF55073 272 429 9.42E-51 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 SMART SM00267 256 430 1.2E-60 T 14-10-2018 IPR000160 GGDEF domain Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 SUPERFAMILY SSF55785 20 125 6.28E-11 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 SUPERFAMILY SSF55785 150 264 4.35E-21 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 Pfam PF08448 PAS fold 30 127 8.2E-11 T 14-10-2018 IPR013656 PAS fold-4 Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 Gene3D G3DSA:3.30.450.20 138 257 7.8E-31 T 14-10-2018 Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 Gene3D G3DSA:3.30.450.20 2 137 1.8E-15 T 14-10-2018 Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 Pfam PF13426 PAS domain 150 255 2.6E-14 T 14-10-2018 IPR000014 PAS domain Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 259 4.4E-23 T 14-10-2018 IPR000014 PAS domain Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 263 430 2.5E-54 T 14-10-2018 IPR000160 GGDEF domain Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 Gene3D G3DSA:3.30.70.270 260 430 3.6E-60 T 14-10-2018 Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 SMART SM00091 8 80 41.0 T 14-10-2018 IPR000014 PAS domain Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 SMART SM00091 139 205 4.7E-8 T 14-10-2018 IPR000014 PAS domain Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 SMART SM00086 216 256 0.069 T 14-10-2018 IPR001610 PAC motif Thimo_0767 e9c09facba3978c21be451d5089c8aad 431 SMART SM00086 86 127 17.0 T 14-10-2018 IPR001610 PAC motif Thimo_2914 27301c5302490c393e5297bd388d39d2 52 Pfam PF11154 Protein of unknown function (DUF2934) 7 42 8.3E-14 T 14-10-2018 IPR021327 Protein of unknown function DUF2934 Thimo_2227 d6d850f887617b80adde6ee80eb28df2 210 Gene3D G3DSA:3.40.50.300 1 205 3.2E-38 T 14-10-2018 Thimo_2227 d6d850f887617b80adde6ee80eb28df2 210 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 164 2.9E-14 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_2227 d6d850f887617b80adde6ee80eb28df2 210 SUPERFAMILY SSF52540 2 207 5.13E-30 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2227 d6d850f887617b80adde6ee80eb28df2 210 PIRSF PIRSF009320 1 209 6.3E-36 T 14-10-2018 Thimo_1587 5d1ec5c1ed0b8a7d9ee0350a6956b400 215 Gene3D G3DSA:2.40.70.10 80 206 8.0E-36 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily Thimo_1587 5d1ec5c1ed0b8a7d9ee0350a6956b400 215 SUPERFAMILY SSF50630 82 212 3.56E-39 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily Thimo_1587 5d1ec5c1ed0b8a7d9ee0350a6956b400 215 Pfam PF05618 Putative ATP-dependant zinc protease 82 211 3.0E-32 T 14-10-2018 Thimo_2234 818ccb8bfbb971671ccf69cae5fe8ec8 357 Gene3D G3DSA:3.40.50.10800 204 299 1.4E-91 T 14-10-2018 Thimo_2234 818ccb8bfbb971671ccf69cae5fe8ec8 357 Pfam PF02445 Quinolinate synthetase A protein 36 342 4.0E-100 T 14-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Thimo_2234 818ccb8bfbb971671ccf69cae5fe8ec8 357 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 33 343 4.1E-107 T 14-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Thimo_2234 818ccb8bfbb971671ccf69cae5fe8ec8 357 Gene3D G3DSA:3.40.50.10800 35 324 1.4E-91 T 14-10-2018 Thimo_2234 818ccb8bfbb971671ccf69cae5fe8ec8 357 SUPERFAMILY SSF142754 33 343 4.05E-105 T 14-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Thimo_2234 818ccb8bfbb971671ccf69cae5fe8ec8 357 Gene3D G3DSA:3.40.50.10800 119 342 1.4E-91 T 14-10-2018 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 SUPERFAMILY SSF52540 3 300 1.44E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 Pfam PF01926 50S ribosome-binding GTPase 5 115 7.2E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.981 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 PIRSF PIRSF006641 1 363 1.4E-153 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 Gene3D G3DSA:3.40.50.300 4 278 9.8E-150 T 14-10-2018 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.8E-40 T 14-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.0E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 5.0E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 5.0E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 5.0E-34 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.8E-156 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 SUPERFAMILY SSF81271 279 360 7.41E-36 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 Gene3D G3DSA:3.10.20.30 48 361 9.8E-150 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_1609 c491a52acf530d0472b8a4744b71b542 363 Gene3D G3DSA:1.10.150.300 113 200 9.8E-150 T 14-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 Thimo_0309 ebcd20b2e7f03709ac857e56f45aae78 80 SUPERFAMILY SSF89447 1 45 4.71E-10 T 14-10-2018 IPR037914 SpoVT-AbrB domain superfamily Thimo_0309 ebcd20b2e7f03709ac857e56f45aae78 80 Gene3D G3DSA:2.10.260.10 3 41 2.9E-9 T 14-10-2018 Thimo_0309 ebcd20b2e7f03709ac857e56f45aae78 80 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 10 43 1.5E-7 T 14-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Thimo_0309 ebcd20b2e7f03709ac857e56f45aae78 80 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 7 33 5.5E-8 T 14-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Thimo_0309 ebcd20b2e7f03709ac857e56f45aae78 80 SMART SM00966 4 49 4.9E-7 T 14-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Thimo_3065 68a3f790fa5d305220f22688fa865877 165 Gene3D G3DSA:1.10.10.60 5 88 6.9E-6 T 14-10-2018 Thimo_3065 68a3f790fa5d305220f22688fa865877 165 SUPERFAMILY SSF46689 1 67 6.27E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3065 68a3f790fa5d305220f22688fa865877 165 Pfam PF01527 Transposase 3 55 1.0E-9 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_3065 68a3f790fa5d305220f22688fa865877 165 Pfam PF01527 Transposase 60 135 2.1E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_2996 b31ce761c5df804f7795ea8fd5d1a7f1 359 Pfam PF02276 Photosynthetic reaction centre cytochrome C subunit 39 343 4.4E-134 T 14-10-2018 IPR003158 Photosynthetic reaction centre, cytochrome c subunit GO:0005506|GO:0009055|GO:0019684|GO:0020037|GO:0030077 Thimo_2996 b31ce761c5df804f7795ea8fd5d1a7f1 359 PIRSF PIRSF000017 1 351 3.2E-120 T 14-10-2018 IPR003158 Photosynthetic reaction centre, cytochrome c subunit GO:0005506|GO:0009055|GO:0019684|GO:0020037|GO:0030077 Thimo_2996 b31ce761c5df804f7795ea8fd5d1a7f1 359 Gene3D G3DSA:1.10.468.10 74 342 5.8E-115 T 14-10-2018 IPR023119 Multihaem cytochrome, PRC subunit superfamily Thimo_2996 b31ce761c5df804f7795ea8fd5d1a7f1 359 Gene3D G3DSA:1.10.468.10 174 327 5.8E-115 T 14-10-2018 IPR023119 Multihaem cytochrome, PRC subunit superfamily Thimo_2996 b31ce761c5df804f7795ea8fd5d1a7f1 359 SUPERFAMILY SSF48695 39 344 1.18E-93 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 Pfam PF07660 Secretin and TonB N terminus short domain 326 372 2.0E-10 T 14-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 300 723 2.8E-162 T 14-10-2018 IPR013355 Type IV pilus secretin PilQ Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 Gene3D G3DSA:2.60.40.3470 157 281 3.1E-29 T 14-10-2018 Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 Gene3D G3DSA:3.55.50.30 282 396 1.9E-44 T 14-10-2018 Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 Gene3D G3DSA:3.30.1370.120 397 460 1.0E-14 T 14-10-2018 IPR038591 NolW-like superfamily Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 SMART SM00965 325 373 1.2E-11 T 14-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 Gene3D G3DSA:2.60.40.3500 40 140 4.4E-7 T 14-10-2018 Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 Pfam PF11741 AMIN domain 53 138 3.3E-9 T 14-10-2018 IPR021731 AMIN domain Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 668 701 - T 14-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 Pfam PF03958 Bacterial type II/III secretion system short domain 401 463 5.4E-14 T 14-10-2018 IPR005644 NolW-like Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 560 584 7.0E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 463 473 7.0E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 687 705 7.0E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 710 724 7.0E-17 T 14-10-2018 IPR001775 GspD/PilQ family Thimo_0087 7e1217a2b67b52b866896038a9ab4888 731 Pfam PF00263 Bacterial type II and III secretion system protein 564 723 1.8E-51 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 Thimo_0905 f1d232aedd7d40b81c86519f47b06daf 467 Gene3D G3DSA:1.10.510.10 7 268 2.4E-22 T 14-10-2018 Thimo_0905 f1d232aedd7d40b81c86519f47b06daf 467 SUPERFAMILY SSF56112 24 288 3.14E-24 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_0905 f1d232aedd7d40b81c86519f47b06daf 467 Pfam PF00069 Protein kinase domain 26 240 2.1E-12 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_0905 f1d232aedd7d40b81c86519f47b06daf 467 SMART SM00220 25 314 1.4E-6 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_3406 9dae8210dd7c5fd77fe173519da59b69 506 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 254 436 1.8E-54 T 14-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Thimo_3406 9dae8210dd7c5fd77fe173519da59b69 506 SUPERFAMILY SSF52540 5 241 1.28E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3406 9dae8210dd7c5fd77fe173519da59b69 506 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 487 205.08 T 14-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Thimo_3406 9dae8210dd7c5fd77fe173519da59b69 506 Gene3D G3DSA:3.40.50.300 4 237 4.8E-58 T 14-10-2018 Thimo_3406 9dae8210dd7c5fd77fe173519da59b69 506 SUPERFAMILY SSF52317 255 446 6.33E-39 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_3406 9dae8210dd7c5fd77fe173519da59b69 506 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 233 3.1E-23 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_3406 9dae8210dd7c5fd77fe173519da59b69 506 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 7 477 5.1E-138 T 14-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Thimo_3406 9dae8210dd7c5fd77fe173519da59b69 506 Gene3D G3DSA:3.40.50.880 261 406 2.7E-15 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1380 29f9ab98b1e41b6f222432a2c28aa888 92 Pfam PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ 5 91 4.2E-7 T 14-10-2018 IPR004386 Toxin-antitoxin system, YafQ-like toxin Thimo_1380 29f9ab98b1e41b6f222432a2c28aa888 92 Gene3D G3DSA:3.30.2310.20 3 92 1.7E-8 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_1380 29f9ab98b1e41b6f222432a2c28aa888 92 SUPERFAMILY SSF143011 1 91 1.44E-14 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_3646 006c5990e6eef00dacef30949f052955 461 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 3 436 6.4E-183 T 14-10-2018 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0009399|GO:0065003 Thimo_3646 006c5990e6eef00dacef30949f052955 461 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 19 434 1.3E-111 T 14-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Thimo_3646 006c5990e6eef00dacef30949f052955 461 Gene3D G3DSA:3.40.50.1980 167 288 3.5E-39 T 14-10-2018 Thimo_3646 006c5990e6eef00dacef30949f052955 461 SUPERFAMILY SSF53807 6 437 3.92E-121 T 14-10-2018 Thimo_3646 006c5990e6eef00dacef30949f052955 461 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 37 44 - T 14-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Thimo_3646 006c5990e6eef00dacef30949f052955 461 Gene3D G3DSA:3.40.50.1980 315 437 8.6E-39 T 14-10-2018 Thimo_3646 006c5990e6eef00dacef30949f052955 461 Gene3D G3DSA:3.40.50.1980 19 161 7.3E-39 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:3.40.50.1000 493 774 2.8E-76 T 14-10-2018 IPR023214 HAD superfamily Thimo_1344 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:3.40.1110.10 523 655 2.8E-76 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 ProSitePatterns PS01229 Hypothetical cof family signature 2. 723 745 - T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:3.30.70.100 100 168 5.5E-15 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 18 94 4.8E-20 T 14-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase Thimo_1344 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 695 711 1.1E-5 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 723 739 1.1E-5 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 Pfam PF00403 Heavy-metal-associated domain 106 164 1.8E-11 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 ProSitePatterns PS01047 Heavy-metal-associated domain. 107 136 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF55008 97 172 3.93E-19 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 514 520 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 723 742 2.2E-27 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 746 758 2.2E-27 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 670 680 2.2E-27 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 364 378 2.2E-27 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 648 659 2.2E-27 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 512 526 2.2E-27 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 234 826 9.8E-156 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 Pfam PF00702 haloacid dehalogenase-like hydrolase 508 737 2.0E-41 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF81653 317 414 2.88E-24 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 634 810 6.3E-41 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 288 534 9.3E-40 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 253 825 4.4E-169 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 Gene3D G3DSA:2.70.150.20 302 418 2.5E-34 T 14-10-2018 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF81665 259 803 2.09E-14 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Thimo_1344 c590d4667287fdb288d36574ccce9720 831 SUPERFAMILY SSF56784 511 822 1.89E-48 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_1344 c590d4667287fdb288d36574ccce9720 831 Pfam PF00122 E1-E2 ATPase 314 492 3.1E-49 T 14-10-2018 Thimo_0793 5ece68299f8943d7112648e020a5f887 882 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 563 836 6.3E-67 T 14-10-2018 IPR011749 Conserved hypothetical protein CHP02243 Thimo_0793 5ece68299f8943d7112648e020a5f887 882 Pfam PF04865 Baseplate J-like protein 632 785 4.1E-10 T 14-10-2018 IPR006949 Baseplate protein J-like Thimo_1190 8c3e5d15e08e1a97e68e58cd99c014bf 194 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 8 187 1.2E-35 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Thimo_1190 8c3e5d15e08e1a97e68e58cd99c014bf 194 Gene3D G3DSA:3.40.50.10420 6 193 1.6E-48 T 14-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily Thimo_1190 8c3e5d15e08e1a97e68e58cd99c014bf 194 PIRSF PIRSF006806 6 190 2.3E-30 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Thimo_1190 8c3e5d15e08e1a97e68e58cd99c014bf 194 SUPERFAMILY SSF100950 8 191 8.37E-47 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Thimo_1190 8c3e5d15e08e1a97e68e58cd99c014bf 194 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 8 187 2.0E-43 T 14-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Thimo_0097 755f712630600f6b06e96dab25978692 437 TIGRFAM TIGR00836 amt: ammonium transporter 37 435 5.0E-136 T 14-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 Thimo_0097 755f712630600f6b06e96dab25978692 437 ProSitePatterns PS01219 Ammonium transporters signature. 191 216 - T 14-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Thimo_0097 755f712630600f6b06e96dab25978692 437 Pfam PF00909 Ammonium Transporter Family 39 435 2.1E-121 T 14-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Thimo_0097 755f712630600f6b06e96dab25978692 437 Gene3D G3DSA:1.10.3430.10 23 437 3.3E-140 T 14-10-2018 IPR029020 Ammonium/urea transporter Thimo_0097 755f712630600f6b06e96dab25978692 437 SUPERFAMILY SSF111352 33 416 7.59E-131 T 14-10-2018 Thimo_1366 ffac2f312ddd27a50f397f29851d5616 676 Pfam PF01432 Peptidase family M3 219 673 1.4E-148 T 14-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 Thimo_1366 ffac2f312ddd27a50f397f29851d5616 676 Gene3D G3DSA:1.10.1370.40 14 671 3.3E-267 T 14-10-2018 Thimo_1366 ffac2f312ddd27a50f397f29851d5616 676 Gene3D G3DSA:1.10.1370.10 137 606 3.3E-267 T 14-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 Thimo_1366 ffac2f312ddd27a50f397f29851d5616 676 SUPERFAMILY SSF55486 1 673 6.28E-200 T 14-10-2018 Thimo_3271 cdc336b7dc284576acf27fd5739ac5d6 401 SUPERFAMILY SSF56762 25 380 1.05E-33 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3271 cdc336b7dc284576acf27fd5739ac5d6 401 Gene3D G3DSA:1.10.645.10 5 380 5.8E-27 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0649 3bdfd0daa8b66cc7b838043498f3a3a7 541 Gene3D G3DSA:3.40.50.300 269 540 4.4E-104 T 14-10-2018 Thimo_0649 3bdfd0daa8b66cc7b838043498f3a3a7 541 SUPERFAMILY SSF52540 159 535 5.65E-89 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0649 3bdfd0daa8b66cc7b838043498f3a3a7 541 SMART SM00382 294 413 1.1E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0649 3bdfd0daa8b66cc7b838043498f3a3a7 541 Gene3D G3DSA:3.30.450.90 138 266 7.9E-32 T 14-10-2018 Thimo_0649 3bdfd0daa8b66cc7b838043498f3a3a7 541 SUPERFAMILY SSF160246 7 139 3.14E-17 T 14-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Thimo_0649 3bdfd0daa8b66cc7b838043498f3a3a7 541 Pfam PF00437 Type II/IV secretion system protein 170 431 1.2E-73 T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_0649 3bdfd0daa8b66cc7b838043498f3a3a7 541 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 44 140 6.8E-13 T 14-10-2018 IPR007831 General secretory system II, protein E, N-terminal Thimo_0649 3bdfd0daa8b66cc7b838043498f3a3a7 541 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 359 373 - T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_1522 2c6106d2044562da277c3ea24c99a80f 57 Pfam PF01679 Proteolipid membrane potential modulator 9 54 7.6E-21 T 14-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 Thimo_1522 2c6106d2044562da277c3ea24c99a80f 57 ProSitePatterns PS01309 Uncharacterized protein family UPF0057 signature. 12 27 - T 14-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.90.640.10 235 300 9.5E-127 T 14-10-2018 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 SUPERFAMILY SSF53067 199 378 1.03E-49 T 14-10-2018 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 9.9E-34 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 SMART SM00842 10 196 4.2E-105 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 411 31.954 T 14-10-2018 IPR020823 Cell division protein FtsA Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Pfam PF14450 Cell division protein FtsA 207 374 2.9E-26 T 14-10-2018 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 PIRSF PIRSF003101 1 411 1.5E-158 T 14-10-2018 IPR020823 Cell division protein FtsA Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Pfam PF14450 Cell division protein FtsA 11 187 5.4E-13 T 14-10-2018 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.30.1490.110 87 169 9.5E-127 T 14-10-2018 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.30.420.40 197 352 9.5E-127 T 14-10-2018 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 10 378 2.5E-156 T 14-10-2018 IPR020823 Cell division protein FtsA Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 Gene3D G3DSA:3.30.420.40 13 371 9.5E-127 T 14-10-2018 Thimo_3106 f5e5bfb3e5c49f64102b9b0c5dadf6a1 411 SUPERFAMILY SSF53067 9 197 2.16E-63 T 14-10-2018 Thimo_3117 06cada2cb6346a95e1cf463a447c0c34 587 Gene3D G3DSA:3.40.710.10 297 480 2.8E-113 T 14-10-2018 Thimo_3117 06cada2cb6346a95e1cf463a447c0c34 587 Gene3D G3DSA:3.30.450.330 237 564 2.8E-113 T 14-10-2018 Thimo_3117 06cada2cb6346a95e1cf463a447c0c34 587 Gene3D G3DSA:3.90.1310.30 61 236 3.6E-46 T 14-10-2018 Thimo_3117 06cada2cb6346a95e1cf463a447c0c34 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 68 221 1.0E-16 T 14-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Thimo_3117 06cada2cb6346a95e1cf463a447c0c34 587 SUPERFAMILY SSF56601 187 575 2.32E-92 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Thimo_3117 06cada2cb6346a95e1cf463a447c0c34 587 SUPERFAMILY SSF56519 64 235 5.76E-42 T 14-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Thimo_3117 06cada2cb6346a95e1cf463a447c0c34 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 261 560 4.9E-72 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Thimo_3117 06cada2cb6346a95e1cf463a447c0c34 587 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 20 575 40.934 T 14-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_1836 654488314a87f929572f10eaf86d14fd 299 SUPERFAMILY SSF102114 4 243 5.89E-32 T 14-10-2018 Thimo_1836 654488314a87f929572f10eaf86d14fd 299 Gene3D G3DSA:3.20.20.70 21 204 3.5E-14 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1836 654488314a87f929572f10eaf86d14fd 299 SMART SM00729 21 238 3.8E-25 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_1836 654488314a87f929572f10eaf86d14fd 299 Pfam PF04055 Radical SAM superfamily 26 188 5.2E-18 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_2978 2b8aa4f7891262723a135cbeb226d298 300 SUPERFAMILY SSF53448 6 239 3.71E-6 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_2978 2b8aa4f7891262723a135cbeb226d298 300 Gene3D G3DSA:3.90.550.10 5 243 6.6E-7 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 SUPERFAMILY SSF53067 4 184 1.65E-64 T 14-10-2018 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 2.0E-292 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.30.420.40 5 379 3.4E-166 T 14-10-2018 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 198 208 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 388 407 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 469 485 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 334 350 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 PRINTS PR00301 70kDa heat shock protein signature 365 385 1.7E-81 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.30.420.40 180 366 3.4E-166 T 14-10-2018 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 SUPERFAMILY SSF53067 187 382 6.75E-68 T 14-10-2018 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 SUPERFAMILY SSF100920 384 540 1.44E-61 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:3.90.640.10 229 316 3.4E-166 T 14-10-2018 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:1.20.1270.10 524 607 1.3E-24 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 Pfam PF00012 Hsp70 protein 4 603 4.0E-265 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 645 37.009 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 SUPERFAMILY SSF100934 507 606 1.22E-21 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 Gene3D G3DSA:2.60.34.10 384 523 2.3E-64 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Thimo_2536 49ec27c91bfa0814df7313483afbc265 650 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Thimo_1406 b4bd91fd90fb6707273c5da7a965c23a 157 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 19 150 1.2E-37 T 14-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 Thimo_1406 b4bd91fd90fb6707273c5da7a965c23a 157 Gene3D G3DSA:3.40.630.30 10 156 3.1E-43 T 14-10-2018 Thimo_1406 b4bd91fd90fb6707273c5da7a965c23a 157 Pfam PF00583 Acetyltransferase (GNAT) family 27 128 1.6E-15 T 14-10-2018 IPR000182 GNAT domain Thimo_1406 b4bd91fd90fb6707273c5da7a965c23a 157 SUPERFAMILY SSF55729 11 154 4.61E-32 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 Gene3D G3DSA:1.10.10.10 1 86 1.5E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 Gene3D G3DSA:3.40.190.10 167 267 4.1E-95 T 14-10-2018 Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 6.6E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 6.6E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 6.6E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 Gene3D G3DSA:3.40.190.10 92 302 4.1E-95 T 14-10-2018 Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 SUPERFAMILY SSF53850 91 300 2.13E-41 T 14-10-2018 Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.6E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 SUPERFAMILY SSF46785 1 112 4.84E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0927 283f1552e2d84faf43ae89d5b9ef69f4 313 Pfam PF03466 LysR substrate binding domain 90 290 3.5E-43 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:3.30.230.10 507 681 7.7E-42 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 78 88 8.1E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 94 105 8.1E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 58 66 8.1E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 12 25 8.1E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 PRINTS PR00315 GTP-binding elongation factor signature 130 139 8.1E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF54211 475 603 9.86E-10 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Pfam PF03764 Elongation factor G, domain IV 475 601 3.1E-6 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF54980 605 682 1.37E-17 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF50447 245 398 5.81E-22 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:3.30.70.240 608 678 7.7E-42 T 14-10-2018 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 SMART SM00838 604 683 3.1E-20 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Pfam PF14492 Elongation Factor G, domain II 402 473 1.6E-25 T 14-10-2018 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:3.40.50.300 2 292 3.0E-92 T 14-10-2018 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Pfam PF00009 Elongation factor Tu GTP binding domain 9 276 2.7E-57 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF52540 7 276 6.0E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Pfam PF00679 Elongation factor G C-terminus 605 681 9.6E-20 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 SMART SM00889 476 602 0.0013 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 175 2.1E-28 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 SUPERFAMILY SSF54980 402 477 5.04E-21 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:3.30.70.870 402 476 6.4E-25 T 14-10-2018 Thimo_1686 49e58ba3082e6186aab2974c846bc80e 683 Gene3D G3DSA:2.40.30.10 293 400 6.7E-22 T 14-10-2018 Thimo_2328 0ebb459f2d8a8bb1a05d908c4963ebe9 222 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 216 3.6E-44 T 14-10-2018 IPR006214 Bax inhibitor 1-related Thimo_0585 d340fcc9bccbc6438e02d0e29a80445b 118 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 23 117 4.3E-41 T 14-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0585 d340fcc9bccbc6438e02d0e29a80445b 118 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 1 118 20.893 T 14-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 Thimo_0585 d340fcc9bccbc6438e02d0e29a80445b 118 Gene3D G3DSA:1.20.58.1610 1 118 6.6E-47 T 14-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 SUPERFAMILY SSF75620 12 353 8.76E-132 T 14-10-2018 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.455 T 14-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 Pfam PF00472 RF-1 domain 214 321 2.3E-41 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 Gene3D G3DSA:3.30.160.20 210 297 7.2E-96 T 14-10-2018 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 Gene3D G3DSA:3.30.70.1660 111 342 7.2E-96 T 14-10-2018 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 357 2.4E-159 T 14-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 SMART SM00937 63 178 1.0E-58 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 Thimo_3130 6bb9f6a37106a2cb77980b28d4fc36d9 359 Pfam PF03462 PCRF domain 13 203 3.2E-69 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 Thimo_2614 18826176cd039df02181edc7c03c1323 586 Gene3D G3DSA:1.20.120.850 361 422 8.5E-9 T 14-10-2018 Thimo_2614 18826176cd039df02181edc7c03c1323 586 Gene3D G3DSA:3.40.50.300 355 465 8.5E-9 T 14-10-2018 Thimo_3468 c741e73bcc06902f83229f2de8f804ee 270 SUPERFAMILY SSF102114 61 233 5.49E-27 T 14-10-2018 Thimo_3468 c741e73bcc06902f83229f2de8f804ee 270 Pfam PF04055 Radical SAM superfamily 63 209 1.7E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_3468 c741e73bcc06902f83229f2de8f804ee 270 Pfam PF13353 4Fe-4S single cluster domain 58 133 3.0E-8 T 14-10-2018 Thimo_3468 c741e73bcc06902f83229f2de8f804ee 270 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 44 232 6.7E-59 T 14-10-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein Thimo_3468 c741e73bcc06902f83229f2de8f804ee 270 Gene3D G3DSA:3.20.20.70 42 234 3.1E-37 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0922 e27930b38c319883c635577cde7844b2 398 Pfam PF01494 FAD binding domain 84 294 1.5E-8 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 Thimo_0922 e27930b38c319883c635577cde7844b2 398 Pfam PF13450 NAD(P)-binding Rossmann-like domain 11 41 7.5E-6 T 14-10-2018 Thimo_0922 e27930b38c319883c635577cde7844b2 398 Gene3D G3DSA:3.50.50.60 3 394 4.3E-77 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0922 e27930b38c319883c635577cde7844b2 398 TIGRFAM TIGR02023 BchP-ChlP: geranylgeranyl reductase 7 393 1.7E-156 T 14-10-2018 IPR010253 Geranylgeranyl reductase, plant/prokaryotic GO:0015979|GO:0015995|GO:0045550|GO:0055114 KEGG: 00900+1.3.1.83 Thimo_0922 e27930b38c319883c635577cde7844b2 398 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 7 304 3.2E-75 T 14-10-2018 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 Thimo_0922 e27930b38c319883c635577cde7844b2 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 8.6E-15 T 14-10-2018 Thimo_0922 e27930b38c319883c635577cde7844b2 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 269 284 8.6E-15 T 14-10-2018 Thimo_0922 e27930b38c319883c635577cde7844b2 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 8.6E-15 T 14-10-2018 Thimo_0922 e27930b38c319883c635577cde7844b2 398 SUPERFAMILY SSF51905 7 366 3.46E-40 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0333 f21e84c3228be4f7cc201956a8c97c9a 532 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 57 219 3.8E-23 T 14-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like Thimo_1076 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 164 184 9.5E-44 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1076 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 261 278 9.5E-44 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1076 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 143 155 9.5E-44 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1076 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 239 256 9.5E-44 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1076 ef02c66df17eb52164d36683cf477670 302 PRINTS PR00834 HtrA/DegQ protease family signature 204 228 9.5E-44 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Thimo_1076 ef02c66df17eb52164d36683cf477670 302 SUPERFAMILY SSF50494 73 295 8.82E-59 T 14-10-2018 IPR009003 Peptidase S1, PA clan Thimo_1076 ef02c66df17eb52164d36683cf477670 302 Gene3D G3DSA:2.40.10.120 73 299 3.7E-77 T 14-10-2018 Thimo_1076 ef02c66df17eb52164d36683cf477670 302 Pfam PF13365 Trypsin-like peptidase domain 133 268 3.9E-30 T 14-10-2018 Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 Gene3D G3DSA:1.20.1260.10 1 159 1.2E-58 T 14-10-2018 IPR012347 Ferritin-like Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 PIRSF PIRSF005900 2 160 1.9E-46 T 14-10-2018 IPR002177 DNA-binding protein Dps Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 ProSitePatterns PS00819 Dps protein family signature 2. 67 81 - T 14-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 Pfam PF00210 Ferritin-like domain 23 159 1.1E-30 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 65 81 6.8E-13 T 14-10-2018 IPR002177 DNA-binding protein Dps Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 136 154 6.8E-13 T 14-10-2018 IPR002177 DNA-binding protein Dps Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 41 57 6.8E-13 T 14-10-2018 IPR002177 DNA-binding protein Dps Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 SUPERFAMILY SSF47240 9 159 8.12E-48 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_0121 44b80ee339c8325c138b684b438e7b31 160 ProSitePatterns PS00818 Dps protein family signature 1. 41 57 - T 14-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 Gene3D G3DSA:3.90.700.10 245 355 4.2E-154 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 SUPERFAMILY SSF51905 6 445 6.76E-72 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.7E-7 T 14-10-2018 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 352 374 1.7E-7 T 14-10-2018 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 PIRSF PIRSF000171 2 533 1.6E-29 T 14-10-2018 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 Gene3D G3DSA:1.20.58.100 422 535 1.1E-39 T 14-10-2018 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 SUPERFAMILY SSF46977 422 526 5.49E-31 T 14-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 7 517 3.1E-201 T 14-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 SUPERFAMILY SSF56425 235 350 6.58E-44 T 14-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 Gene3D G3DSA:3.50.50.60 8 401 4.2E-154 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 Pfam PF02910 Fumarate reductase flavoprotein C-term 438 524 6.4E-14 T 14-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_2006 7145b0afa061696ae007a8e1cdc2f4bf 540 Pfam PF00890 FAD binding domain 8 389 3.2E-96 T 14-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_2043 1c720528ff77ad13de73563d8a261b44 220 Gene3D G3DSA:3.40.50.150 11 220 7.4E-68 T 14-10-2018 Thimo_2043 1c720528ff77ad13de73563d8a261b44 220 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 37 219 2.8E-55 T 14-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Thimo_2043 1c720528ff77ad13de73563d8a261b44 220 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 5 220 29.974 T 14-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Thimo_2043 1c720528ff77ad13de73563d8a261b44 220 SUPERFAMILY SSF53335 1 219 2.01E-30 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2043 1c720528ff77ad13de73563d8a261b44 220 Pfam PF02390 Putative methyltransferase 45 213 2.8E-55 T 14-10-2018 Thimo_1263 755e951efca331cf88954ec0544a6508 240 Pfam PF01464 Transglycosylase SLT domain 48 154 1.5E-28 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Thimo_1263 755e951efca331cf88954ec0544a6508 240 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 64 92 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Thimo_1263 755e951efca331cf88954ec0544a6508 240 Gene3D G3DSA:1.10.530.10 40 175 3.5E-36 T 14-10-2018 Thimo_1263 755e951efca331cf88954ec0544a6508 240 SUPERFAMILY SSF53955 39 166 4.44E-36 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_2405 208b8abc94faeb62e9ee9e3132f65e7f 253 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 110 231 6.4E-22 T 14-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Thimo_0504 a4afc0d0123efe5e57ede45a3d6c0e7a 371 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 4 347 7.7E-90 T 14-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 Thimo_0504 a4afc0d0123efe5e57ede45a3d6c0e7a 371 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 349 1.3E-59 T 14-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Thimo_2681 03a443a74361fff3a1a9bc9825ccb745 631 Pfam PF13193 AMP-binding enzyme C-terminal domain 510 588 3.1E-23 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Thimo_2681 03a443a74361fff3a1a9bc9825ccb745 631 Pfam PF00501 AMP-binding enzyme 65 500 2.2E-86 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Thimo_2681 03a443a74361fff3a1a9bc9825ccb745 631 Gene3D G3DSA:3.30.300.30 496 626 8.5E-24 T 14-10-2018 Thimo_2681 03a443a74361fff3a1a9bc9825ccb745 631 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 3 57 1.6E-20 T 14-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Thimo_2681 03a443a74361fff3a1a9bc9825ccb745 631 Gene3D G3DSA:3.40.50.12780 36 493 1.6E-107 T 14-10-2018 Thimo_2681 03a443a74361fff3a1a9bc9825ccb745 631 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 14-10-2018 IPR020845 AMP-binding, conserved site Thimo_2681 03a443a74361fff3a1a9bc9825ccb745 631 SUPERFAMILY SSF56801 3 622 2.62E-161 T 14-10-2018 Thimo_1813 20f726bfad62808cdbd07c8e9c931415 144 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 8 128 3.5E-22 T 14-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Thimo_1813 20f726bfad62808cdbd07c8e9c931415 144 SUPERFAMILY SSF52788 5 128 6.67E-37 T 14-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily Thimo_1813 20f726bfad62808cdbd07c8e9c931415 144 Gene3D G3DSA:3.40.50.2300 4 131 4.2E-38 T 14-10-2018 Thimo_1813 20f726bfad62808cdbd07c8e9c931415 144 SMART SM00226 6 134 1.5E-32 T 14-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 Gene3D G3DSA:1.20.120.1080 402 482 7.2E-12 T 14-10-2018 Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 SMART SM00847 416 513 2.9E-11 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 Gene3D G3DSA:3.40.50.300 208 370 3.2E-48 T 14-10-2018 Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 Pfam PF00271 Helicase conserved C-terminal domain 237 356 1.0E-13 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 SMART SM00487 29 214 1.9E-12 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 PIRSF PIRSF005496 28 864 3.8E-290 T 14-10-2018 Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 SMART SM00490 254 356 1.4E-17 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 32 857 6.0E-280 T 14-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 Gene3D G3DSA:3.40.50.300 15 207 1.5E-49 T 14-10-2018 Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 SUPERFAMILY SSF52540 45 366 1.7E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 Pfam PF08482 ATP-dependent helicase C-terminal 718 850 8.2E-52 T 14-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal Thimo_1605 203749f51f65f73787b1c84b80c89bb8 864 Pfam PF04408 Helicase associated domain (HA2) 417 484 1.1E-14 T 14-10-2018 IPR007502 Helicase-associated domain GO:0004386 Thimo_0990 c2eee16e9b6214f4f224da84935fe533 334 SUPERFAMILY SSF53335 23 203 8.3E-21 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0990 c2eee16e9b6214f4f224da84935fe533 334 Gene3D G3DSA:3.40.50.150 20 192 7.0E-17 T 14-10-2018 Thimo_0990 c2eee16e9b6214f4f224da84935fe533 334 Pfam PF05050 Methyltransferase FkbM domain 25 195 4.1E-17 T 14-10-2018 IPR006342 Methyltransferase FkbM Thimo_0990 c2eee16e9b6214f4f224da84935fe533 334 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 23 163 1.8E-16 T 14-10-2018 IPR006342 Methyltransferase FkbM Thimo_3334 cfca925912dae46a25bf668355fbfe3f 593 SUPERFAMILY SSF56235 1 225 4.72E-63 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3334 cfca925912dae46a25bf668355fbfe3f 593 Pfam PF00733 Asparagine synthase 243 588 1.5E-81 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Thimo_3334 cfca925912dae46a25bf668355fbfe3f 593 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 521 3.7E-126 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Thimo_3334 cfca925912dae46a25bf668355fbfe3f 593 PIRSF PIRSF001589 1 593 6.5E-194 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Thimo_3334 cfca925912dae46a25bf668355fbfe3f 593 Gene3D G3DSA:3.60.20.10 4 185 1.4E-57 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3334 cfca925912dae46a25bf668355fbfe3f 593 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 590 2.2E-282 T 14-10-2018 IPR017535 Asparagine synthase family amidotransferase Thimo_3334 cfca925912dae46a25bf668355fbfe3f 593 SUPERFAMILY SSF52402 234 570 1.61E-70 T 14-10-2018 Thimo_3334 cfca925912dae46a25bf668355fbfe3f 593 Pfam PF13537 Glutamine amidotransferase domain 47 167 4.7E-43 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Thimo_1378 4425028ba0e321d8d8deccacae72c94d 295 Pfam PF02146 Sir2 family 68 244 2.5E-46 T 14-10-2018 IPR003000 Sirtuin family GO:0070403 Thimo_1378 4425028ba0e321d8d8deccacae72c94d 295 Gene3D G3DSA:3.30.1600.10 77 214 1.2E-79 T 14-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily Thimo_1378 4425028ba0e321d8d8deccacae72c94d 295 SUPERFAMILY SSF52467 39 292 1.99E-79 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_1378 4425028ba0e321d8d8deccacae72c94d 295 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 61 294 54.347 T 14-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 Thimo_1378 4425028ba0e321d8d8deccacae72c94d 295 Gene3D G3DSA:3.40.50.1220 59 286 1.2E-79 T 14-10-2018 Thimo_0417 1445552e886119196599a1d85e10d7b0 119 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 23 110 6.7E-17 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0417 1445552e886119196599a1d85e10d7b0 119 PIRSF PIRSF006223 4 111 1.8E-24 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0417 1445552e886119196599a1d85e10d7b0 119 Gene3D G3DSA:1.10.10.370 43 111 1.1E-17 T 14-10-2018 Thimo_0417 1445552e886119196599a1d85e10d7b0 119 SUPERFAMILY SSF69721 17 110 4.58E-19 T 14-10-2018 IPR025526 DsrC-like domain superfamily Thimo_0417 1445552e886119196599a1d85e10d7b0 119 Pfam PF04358 DsrC like protein 22 109 2.9E-20 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_1617 15d833f5daf8a21dff4e479e4cf04176 183 Gene3D G3DSA:2.20.25.120 54 87 3.2E-55 T 14-10-2018 Thimo_1617 15d833f5daf8a21dff4e479e4cf04176 183 SUPERFAMILY SSF52540 8 168 5.09E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1617 15d833f5daf8a21dff4e479e4cf04176 183 Gene3D G3DSA:3.40.50.300 11 168 3.2E-55 T 14-10-2018 Thimo_1617 15d833f5daf8a21dff4e479e4cf04176 183 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 10 145 8.3E-48 T 14-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Thimo_1617 15d833f5daf8a21dff4e479e4cf04176 183 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 10 169 7.7E-39 T 14-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Thimo_1212 9b848e3ab3f1dccf88e348679bbe8ec0 248 PIRSF PIRSF000005 134 230 7.6E-12 T 14-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Thimo_1212 9b848e3ab3f1dccf88e348679bbe8ec0 248 PIRSF PIRSF000005 2 205 1.1E-32 T 14-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Thimo_1212 9b848e3ab3f1dccf88e348679bbe8ec0 248 Gene3D G3DSA:1.10.760.10 133 215 8.7E-15 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1212 9b848e3ab3f1dccf88e348679bbe8ec0 248 Gene3D G3DSA:1.10.760.10 41 121 3.5E-17 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1212 9b848e3ab3f1dccf88e348679bbe8ec0 248 Pfam PF00034 Cytochrome c 45 122 2.2E-5 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_1212 9b848e3ab3f1dccf88e348679bbe8ec0 248 SUPERFAMILY SSF46626 133 211 1.4E-12 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1212 9b848e3ab3f1dccf88e348679bbe8ec0 248 SUPERFAMILY SSF46626 36 123 1.89E-16 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1212 9b848e3ab3f1dccf88e348679bbe8ec0 248 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 136 186 1.5E-6 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2430 da90969688c40324931983a658bdba57 345 SUPERFAMILY SSF52540 3 268 7.31E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2430 da90969688c40324931983a658bdba57 345 Hamap MF_00268 Protein RecA [recA]. 5 330 52.742 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_2430 da90969688c40324931983a658bdba57 345 SMART SM00382 58 229 1.9E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2430 da90969688c40324931983a658bdba57 345 SUPERFAMILY SSF54752 269 326 3.66E-22 T 14-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Thimo_2430 da90969688c40324931983a658bdba57 345 Gene3D G3DSA:3.30.250.10 269 328 6.2E-28 T 14-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Thimo_2430 da90969688c40324931983a658bdba57 345 Gene3D G3DSA:3.40.50.300 32 268 6.2E-82 T 14-10-2018 Thimo_2430 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 298 315 2.1E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_2430 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 166 195 2.1E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_2430 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 211 239 2.1E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_2430 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 244 273 2.1E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_2430 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 94 123 2.1E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_2430 da90969688c40324931983a658bdba57 345 PRINTS PR00142 RecA protein signature 128 157 2.1E-84 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_2430 da90969688c40324931983a658bdba57 345 ProSitePatterns PS00321 recA signature. 214 222 - T 14-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 Thimo_2430 da90969688c40324931983a658bdba57 345 Pfam PF00154 recA bacterial DNA recombination protein 7 269 1.9E-145 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_2430 da90969688c40324931983a658bdba57 345 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 325 5.7E-175 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_3455 f6e03b6b445203df573501c92b3ae0e1 119 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 21 99 7.6E-29 T 14-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 Thimo_3455 f6e03b6b445203df573501c92b3ae0e1 119 Gene3D G3DSA:1.10.260.40 18 118 2.5E-27 T 14-10-2018 Thimo_3455 f6e03b6b445203df573501c92b3ae0e1 119 SMART SM00530 30 85 0.0011 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3455 f6e03b6b445203df573501c92b3ae0e1 119 SUPERFAMILY SSF47413 25 108 3.56E-23 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_3455 f6e03b6b445203df573501c92b3ae0e1 119 Pfam PF01381 Helix-turn-helix 37 81 1.9E-7 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 Gene3D G3DSA:3.30.450.20 186 309 1.2E-30 T 14-10-2018 Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 SMART SM00052 484 730 5.0E-96 T 14-10-2018 IPR001633 EAL domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 Pfam PF00990 Diguanylate cyclase, GGDEF domain 312 469 1.1E-41 T 14-10-2018 IPR000160 GGDEF domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 SUPERFAMILY SSF55785 59 175 6.88E-11 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 SUPERFAMILY SSF55073 317 474 3.92E-45 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 Gene3D G3DSA:3.30.450.20 56 177 3.2E-10 T 14-10-2018 Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 SMART SM00267 301 474 4.7E-52 T 14-10-2018 IPR000160 GGDEF domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 Gene3D G3DSA:3.30.70.270 310 476 3.3E-51 T 14-10-2018 Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 Pfam PF00563 EAL domain 490 725 1.6E-68 T 14-10-2018 IPR001633 EAL domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 Pfam PF13426 PAS domain 198 299 7.5E-15 T 14-10-2018 IPR000014 PAS domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 Pfam PF13426 PAS domain 79 177 0.0058 T 14-10-2018 IPR000014 PAS domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 SUPERFAMILY SSF141868 489 735 5.36E-77 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 SMART SM00091 67 133 0.03 T 14-10-2018 IPR000014 PAS domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 SMART SM00091 187 254 4.7E-6 T 14-10-2018 IPR000014 PAS domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 311 472 5.1E-37 T 14-10-2018 IPR000160 GGDEF domain Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 SUPERFAMILY SSF55785 192 299 7.33E-23 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 Gene3D G3DSA:3.20.20.450 485 735 5.1E-86 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0107 fe05cf889f3f81825d605160a26a6c5c 785 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 186 308 3.4E-17 T 14-10-2018 IPR000014 PAS domain Thimo_2837 d94c803f6082cde54c392d29940fe58b 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.968 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2837 d94c803f6082cde54c392d29940fe58b 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 14-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2837 d94c803f6082cde54c392d29940fe58b 118 PIRSF PIRSF002134 1 118 1.9E-39 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2837 d94c803f6082cde54c392d29940fe58b 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 4.5E-31 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2837 d94c803f6082cde54c392d29940fe58b 118 Gene3D G3DSA:4.10.910.10 72 118 5.1E-24 T 14-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2837 d94c803f6082cde54c392d29940fe58b 118 SUPERFAMILY SSF46946 2 114 7.07E-44 T 14-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Thimo_2837 d94c803f6082cde54c392d29940fe58b 118 Gene3D G3DSA:1.10.8.50 1 71 3.4E-26 T 14-10-2018 Thimo_2837 d94c803f6082cde54c392d29940fe58b 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 9.5E-51 T 14-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0971 6a1ee28587927ae6d889c0c1469d3a07 214 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 14 207 9.0E-65 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 Thimo_0971 6a1ee28587927ae6d889c0c1469d3a07 214 Pfam PF01300 Telomere recombination 30 205 3.5E-46 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 Thimo_0971 6a1ee28587927ae6d889c0c1469d3a07 214 SUPERFAMILY SSF55821 8 210 5.19E-65 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Thimo_0971 6a1ee28587927ae6d889c0c1469d3a07 214 Gene3D G3DSA:3.90.870.10 8 212 4.0E-66 T 14-10-2018 Thimo_0177 93496913161179c910560dce7bb6367e 145 Pfam PF04186 FxsA cytoplasmic membrane protein 6 108 3.6E-34 T 14-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 Thimo_2520 b9e2941100ad59fc1777c91a72f7d1c6 410 Pfam PF12704 MacB-like periplasmic core domain 23 242 2.2E-14 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Thimo_2520 b9e2941100ad59fc1777c91a72f7d1c6 410 Pfam PF02687 FtsX-like permease family 300 403 7.0E-14 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_2131 b535bea0b2e50da6badb848f5c051d04 173 Gene3D G3DSA:2.40.30.60 2 98 1.2E-30 T 14-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 Thimo_2131 b535bea0b2e50da6badb848f5c051d04 173 SUPERFAMILY SSF50447 9 98 7.42E-21 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2131 b535bea0b2e50da6badb848f5c051d04 173 Gene3D G3DSA:2.30.30.240 104 173 5.2E-22 T 14-10-2018 Thimo_2131 b535bea0b2e50da6badb848f5c051d04 173 Pfam PF01782 RimM N-terminal domain 12 95 1.3E-22 T 14-10-2018 IPR002676 RimM, N-terminal GO:0006364 Thimo_2131 b535bea0b2e50da6badb848f5c051d04 173 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 9 173 22.67 T 14-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Thimo_2131 b535bea0b2e50da6badb848f5c051d04 173 SUPERFAMILY SSF50346 104 173 1.57E-15 T 14-10-2018 IPR011033 PRC-barrel-like superfamily Thimo_2131 b535bea0b2e50da6badb848f5c051d04 173 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 10 172 1.3E-44 T 14-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 Gene3D G3DSA:2.30.30.30 118 195 7.8E-33 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 Gene3D G3DSA:4.10.950.10 196 274 2.0E-35 T 14-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 14-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 Gene3D G3DSA:2.40.50.140 1 114 3.5E-44 T 14-10-2018 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.2E-125 T 14-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 2.9E-57 T 14-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 116 1.7E-30 T 14-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 SUPERFAMILY SSF50104 126 272 5.05E-62 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 PIRSF PIRSF002158 9 275 1.4E-103 T 14-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 SUPERFAMILY SSF50249 3 124 5.14E-45 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 SMART SM01382 124 252 1.2E-91 T 14-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 SMART SM01383 42 118 7.8E-43 T 14-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2857 9ca3b82d8d7af4eeb256b7e301a98929 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.426 T 14-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Thimo_3336 8b311d866c5b8ca1f2f1e59ebe0268eb 511 Pfam PF02538 Hydantoinase B/oxoprolinase 2 510 7.0E-190 T 14-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 SUPERFAMILY SSF55021 327 413 4.27E-27 T 14-10-2018 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 Gene3D G3DSA:3.40.1020.10 328 505 6.1E-72 T 14-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 Gene3D G3DSA:3.40.50.1100 14 317 2.1E-136 T 14-10-2018 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 SUPERFAMILY SSF55021 410 502 2.58E-27 T 14-10-2018 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 Gene3D G3DSA:3.40.50.1100 50 146 2.1E-136 T 14-10-2018 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 SUPERFAMILY SSF53686 5 355 9.56E-106 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 303 7.9E-84 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 319 409 2.5E-25 T 14-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 419 502 9.0E-25 T 14-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Thimo_1188 49e187817f172e23ed5265f6f2a1665a 513 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 5 502 4.1E-242 T 14-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Thimo_3550 95bc94c9b87b6f7eed5fc886b0acdaa2 254 SUPERFAMILY SSF53790 2 249 2.88E-60 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Thimo_3550 95bc94c9b87b6f7eed5fc886b0acdaa2 254 Gene3D G3DSA:3.30.950.10 111 231 6.5E-39 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Thimo_3550 95bc94c9b87b6f7eed5fc886b0acdaa2 254 Gene3D G3DSA:3.40.1010.10 1 110 3.7E-24 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Thimo_3550 95bc94c9b87b6f7eed5fc886b0acdaa2 254 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_3550 95bc94c9b87b6f7eed5fc886b0acdaa2 254 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 14-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Thimo_3550 95bc94c9b87b6f7eed5fc886b0acdaa2 254 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 249 8.4E-90 T 14-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 Thimo_3550 95bc94c9b87b6f7eed5fc886b0acdaa2 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 2.0E-37 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Thimo_2892 fb7d959ce421eea1b99f6aa9312ccb4d 319 Gene3D G3DSA:3.40.50.1820 5 294 7.3E-54 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2892 fb7d959ce421eea1b99f6aa9312ccb4d 319 Pfam PF00561 alpha/beta hydrolase fold 34 166 3.1E-17 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_2892 fb7d959ce421eea1b99f6aa9312ccb4d 319 SUPERFAMILY SSF53474 8 294 3.78E-43 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2892 fb7d959ce421eea1b99f6aa9312ccb4d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 9.2E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_2892 fb7d959ce421eea1b99f6aa9312ccb4d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 9.2E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_2892 fb7d959ce421eea1b99f6aa9312ccb4d 319 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 9.2E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0790 a8ccb56959169b4ddc2362ec0dc78165 173 Gene3D G3DSA:2.40.50.230 10 90 5.3E-7 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Thimo_0790 a8ccb56959169b4ddc2362ec0dc78165 173 SUPERFAMILY SSF69255 8 86 4.84E-16 T 14-10-2018 Thimo_2371 1f60b191561ba51df5cd21c24a8866b4 614 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 44.935 T 14-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Thimo_2371 1f60b191561ba51df5cd21c24a8866b4 614 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Thimo_2371 1f60b191561ba51df5cd21c24a8866b4 614 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 2.3E-247 T 14-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Thimo_2371 1f60b191561ba51df5cd21c24a8866b4 614 SUPERFAMILY SSF143975 3 420 8.5E-135 T 14-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Thimo_2371 1f60b191561ba51df5cd21c24a8866b4 614 SUPERFAMILY SSF52016 421 611 8.63E-59 T 14-10-2018 Thimo_2371 1f60b191561ba51df5cd21c24a8866b4 614 Gene3D G3DSA:3.50.30.80 421 572 6.3E-55 T 14-10-2018 Thimo_2371 1f60b191561ba51df5cd21c24a8866b4 614 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 14-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Thimo_2371 1f60b191561ba51df5cd21c24a8866b4 614 Pfam PF00920 Dehydratase family 34 607 3.4E-219 T 14-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Thimo_2212 be9f636b608e415b717b027d3efc40e6 584 SUPERFAMILY SSF51445 14 528 5.48E-48 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_2858 e86472f8d03cffb5a11007bf916db5cd 97 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 20.707 T 14-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Thimo_2858 e86472f8d03cffb5a11007bf916db5cd 97 SUPERFAMILY SSF54189 1 92 1.55E-27 T 14-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2858 e86472f8d03cffb5a11007bf916db5cd 97 Gene3D G3DSA:3.30.70.330 1 97 1.2E-32 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_2858 e86472f8d03cffb5a11007bf916db5cd 97 Pfam PF00276 Ribosomal protein L23 8 94 5.1E-29 T 14-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF02754 Cysteine-rich domain 1025 1113 1.1E-4 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF02754 Cysteine-rich domain 1150 1237 0.14 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF55103 561 780 7.19E-28 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF12447 Protein of unknown function (DUF3683) 7 119 3.0E-48 T 14-10-2018 IPR022153 Protein of unknown function DUF3683 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF56176 130 398 3.46E-53 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF46548 795 907 3.66E-12 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF01565 FAD binding domain 169 314 7.8E-25 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 SUPERFAMILY SSF55103 419 550 5.07E-15 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF13183 4Fe-4S dicluster domain 813 892 4.1E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Gene3D G3DSA:1.10.1060.10 789 910 8.9E-6 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Gene3D G3DSA:3.30.70.2740 667 741 2.9E-7 T 14-10-2018 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 878 889 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Gene3D G3DSA:3.30.465.40 130 325 1.6E-35 T 14-10-2018 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF02913 FAD linked oxidases, C-terminal domain 673 777 5.3E-19 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF02913 FAD linked oxidases, C-terminal domain 425 547 1.3E-6 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Thimo_1721 f17ec7d54969a87e4d86067c0f8af2cc 1285 Pfam PF11880 Domain of unknown function (DUF3400) 1242 1285 1.3E-21 T 14-10-2018 IPR021817 Protein of unknown function DUF3400 Thimo_1012 580c7a057d103fbc0a11473737dbd306 277 Pfam PF13276 HTH-like domain 33 86 1.9E-7 T 14-10-2018 IPR025948 HTH-like domain Thimo_1012 580c7a057d103fbc0a11473737dbd306 277 Pfam PF00665 Integrase core domain 110 225 2.0E-28 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_1012 580c7a057d103fbc0a11473737dbd306 277 SUPERFAMILY SSF53098 103 267 4.25E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1012 580c7a057d103fbc0a11473737dbd306 277 Gene3D G3DSA:3.30.420.10 108 255 1.3E-11 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2153 92c13f48688e2faf05f20f9a8ca6dedc 605 Pfam PF13699 Domain of unknown function (DUF4157) 55 129 3.4E-27 T 14-10-2018 IPR025295 Domain of unknown function DUF4157 Thimo_0291 adb31b5d2349f13ee53d2c2ae74ec898 250 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 113 248 3.7E-40 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Thimo_0291 adb31b5d2349f13ee53d2c2ae74ec898 250 Pfam PF13144 Chaperone for flagella basal body P-ring formation 48 248 1.7E-53 T 14-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Thimo_0291 adb31b5d2349f13ee53d2c2ae74ec898 250 SMART SM00858 125 187 2.7E-12 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Thimo_0291 adb31b5d2349f13ee53d2c2ae74ec898 250 Gene3D G3DSA:2.30.30.760 192 250 1.9E-12 T 14-10-2018 Thimo_0306 c3d941ab8a71c24d618387bab3df74d3 237 SUPERFAMILY SSF52980 8 163 1.18E-37 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_0306 c3d941ab8a71c24d618387bab3df74d3 237 Gene3D G3DSA:3.90.1570.10 4 181 1.2E-35 T 14-10-2018 Thimo_0306 c3d941ab8a71c24d618387bab3df74d3 237 Pfam PF05685 Putative restriction endonuclease 15 167 1.1E-33 T 14-10-2018 IPR008538 Domain of unknown function DUF820 Thimo_0389 17761c80b9547aa00b770738b7ccb630 390 Pfam PF07876 Stress responsive A/B Barrel Domain 297 388 7.6E-12 T 14-10-2018 IPR013097 Stress responsive alpha-beta barrel Thimo_0389 17761c80b9547aa00b770738b7ccb630 390 SUPERFAMILY SSF54909 297 389 8.94E-14 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel Thimo_0389 17761c80b9547aa00b770738b7ccb630 390 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 284 2.3E-66 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Thimo_0389 17761c80b9547aa00b770738b7ccb630 390 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 283 6.2E-83 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Thimo_0389 17761c80b9547aa00b770738b7ccb630 390 Gene3D G3DSA:3.20.20.70 1 290 8.6E-88 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0389 17761c80b9547aa00b770738b7ccb630 390 SMART SM00886 297 389 2.8E-15 T 14-10-2018 IPR013097 Stress responsive alpha-beta barrel Thimo_0389 17761c80b9547aa00b770738b7ccb630 390 Gene3D G3DSA:3.30.70.100 296 389 1.6E-13 T 14-10-2018 Thimo_0389 17761c80b9547aa00b770738b7ccb630 390 SUPERFAMILY SSF51569 2 284 4.98E-78 T 14-10-2018 Thimo_1963 6fcf4ef760b4c804fcb4de56983d04f6 78 Pfam PF04325 Protein of unknown function (DUF465) 29 74 5.2E-14 T 14-10-2018 IPR007420 Protein of unknown function DUF465 Thimo_1963 6fcf4ef760b4c804fcb4de56983d04f6 78 Gene3D G3DSA:1.20.58.660 11 78 4.3E-19 T 14-10-2018 Thimo_0175 322f97667741274ad4527151fda643f1 547 Gene3D G3DSA:1.10.560.10 8 521 7.2E-242 T 14-10-2018 IPR027413 GroEL-like equatorial domain superfamily Thimo_0175 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Thimo_0175 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Thimo_0175 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Thimo_0175 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Thimo_0175 322f97667741274ad4527151fda643f1 547 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Thimo_0175 322f97667741274ad4527151fda643f1 547 Gene3D G3DSA:3.30.260.10 136 410 7.2E-242 T 14-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Thimo_0175 322f97667741274ad4527151fda643f1 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 1.2E-97 T 14-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Thimo_0175 322f97667741274ad4527151fda643f1 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 6.2E-260 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Thimo_0175 322f97667741274ad4527151fda643f1 547 Gene3D G3DSA:3.50.7.10 192 372 7.2E-242 T 14-10-2018 IPR027409 GroEL-like apical domain superfamily Thimo_0175 322f97667741274ad4527151fda643f1 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.924 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Thimo_0175 322f97667741274ad4527151fda643f1 547 SUPERFAMILY SSF54849 137 203 1.9E-24 T 14-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Thimo_0175 322f97667741274ad4527151fda643f1 547 SUPERFAMILY SSF52029 184 376 9.42E-85 T 14-10-2018 IPR027409 GroEL-like apical domain superfamily Thimo_0175 322f97667741274ad4527151fda643f1 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 14-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Thimo_0175 322f97667741274ad4527151fda643f1 547 SUPERFAMILY SSF48592 7 521 5.19E-79 T 14-10-2018 IPR027413 GroEL-like equatorial domain superfamily Thimo_1461 3c0a8067808ebc7f1559b20a0365c0aa 222 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 201 2.9E-43 T 14-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Thimo_1461 3c0a8067808ebc7f1559b20a0365c0aa 222 Gene3D G3DSA:1.20.1440.100 15 88 1.9E-74 T 14-10-2018 Thimo_1461 3c0a8067808ebc7f1559b20a0365c0aa 222 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 190 7.0E-22 T 14-10-2018 Thimo_1461 3c0a8067808ebc7f1559b20a0365c0aa 222 SUPERFAMILY SSF56784 3 208 2.76E-34 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_1461 3c0a8067808ebc7f1559b20a0365c0aa 222 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 5.1E-39 T 14-10-2018 Thimo_1461 3c0a8067808ebc7f1559b20a0365c0aa 222 Gene3D G3DSA:3.40.50.1000 3 212 1.9E-74 T 14-10-2018 IPR023214 HAD superfamily Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 Gene3D G3DSA:3.20.20.70 802 1236 1.1E-203 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 SUPERFAMILY SSF69336 1235 1529 6.93E-91 T 14-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 SUPERFAMILY SSF56235 22 443 9.17E-159 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 Pfam PF01645 Conserved region in glutamate synthase 817 1186 4.0E-158 T 14-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 Pfam PF01493 GXGXG motif 1266 1453 1.5E-81 T 14-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 Gene3D G3DSA:3.60.20.10 22 448 8.0E-188 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 Pfam PF00310 Glutamine amidotransferases class-II 22 440 1.6E-186 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 SUPERFAMILY SSF51395 455 1223 7.79E-266 T 14-10-2018 Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 Pfam PF04898 Glutamate synthase central domain 468 754 1.5E-109 T 14-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 Gene3D G3DSA:3.20.20.70 449 801 5.0E-134 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0090 04112423fa6b1061e16bbe2c6d4794bd 1551 Gene3D G3DSA:2.160.20.60 1238 1537 2.1E-108 T 14-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 Thimo_1900 14bacd9b13e9e5607f3a3106ee3f124a 205 SUPERFAMILY SSF101874 30 202 2.62E-20 T 14-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Thimo_1900 14bacd9b13e9e5607f3a3106ee3f124a 205 Gene3D G3DSA:2.40.128.110 28 204 7.6E-49 T 14-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Thimo_1900 14bacd9b13e9e5607f3a3106ee3f124a 205 SMART SM00867 31 200 4.4E-14 T 14-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Thimo_1900 14bacd9b13e9e5607f3a3106ee3f124a 205 PIRSF PIRSF029811 7 202 4.9E-63 T 14-10-2018 IPR027016 Uncharacterised protein with YceI domain Thimo_1900 14bacd9b13e9e5607f3a3106ee3f124a 205 Pfam PF04264 YceI-like domain 32 199 1.1E-11 T 14-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Thimo_3726 66955152b28c8ea33212cfc5ea52ac24 251 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 8 45 1.9E-7 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_3726 66955152b28c8ea33212cfc5ea52ac24 251 Gene3D G3DSA:3.40.50.300 5 119 4.3E-10 T 14-10-2018 Thimo_3726 66955152b28c8ea33212cfc5ea52ac24 251 SUPERFAMILY SSF52540 5 151 8.75E-14 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 1 449 32.181 T 14-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 SUPERFAMILY SSF53244 316 448 8.7E-35 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 28 448 7.6E-126 T 14-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 Gene3D G3DSA:3.40.1190.10 80 313 1.4E-69 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 Gene3D G3DSA:3.90.190.20 315 452 2.1E-38 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 316 388 1.0E-10 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 Pfam PF01225 Mur ligase family, catalytic domain 25 91 7.6E-9 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 SUPERFAMILY SSF53623 100 313 8.11E-51 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 Pfam PF08245 Mur ligase middle domain 104 295 4.4E-42 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 Gene3D G3DSA:3.40.1390.10 2 79 4.4E-23 T 14-10-2018 Thimo_3115 4019e1b7bdb0e11a8e75f3128c2e567a 453 SUPERFAMILY SSF63418 2 96 3.53E-24 T 14-10-2018 IPR035911 MurE/MurF, N-terminal Thimo_0544 eb71854d8d84944edb9f61ea3de560ca 139 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 96 130 2.0E-9 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Thimo_0544 eb71854d8d84944edb9f61ea3de560ca 139 SUPERFAMILY SSF57716 98 136 1.71E-6 T 14-10-2018 Thimo_0544 eb71854d8d84944edb9f61ea3de560ca 139 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 18 128 4.0E-42 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Thimo_0544 eb71854d8d84944edb9f61ea3de560ca 139 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 14 137 27.704 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Thimo_0544 eb71854d8d84944edb9f61ea3de560ca 139 Gene3D G3DSA:1.20.120.910 9 138 2.0E-37 T 14-10-2018 Thimo_0544 eb71854d8d84944edb9f61ea3de560ca 139 SUPERFAMILY SSF109635 4 97 3.79E-31 T 14-10-2018 IPR037187 DksA, N-terminal domain superfamily Thimo_3510 770e0589be989b2480235f8393319d19 449 SUPERFAMILY SSF81301 23 175 3.16E-39 T 14-10-2018 Thimo_3510 770e0589be989b2480235f8393319d19 449 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 207 269 2.3E-19 T 14-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Thimo_3510 770e0589be989b2480235f8393319d19 449 Gene3D G3DSA:1.10.3090.10 177 424 4.7E-88 T 14-10-2018 Thimo_3510 770e0589be989b2480235f8393319d19 449 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 14 440 37.452 T 14-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Thimo_3510 770e0589be989b2480235f8393319d19 449 Gene3D G3DSA:3.30.460.10 17 176 1.1E-59 T 14-10-2018 Thimo_3510 770e0589be989b2480235f8393319d19 449 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 19 438 1.6E-158 T 14-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Thimo_3510 770e0589be989b2480235f8393319d19 449 SUPERFAMILY SSF81891 179 415 5.62E-46 T 14-10-2018 Thimo_3510 770e0589be989b2480235f8393319d19 449 Pfam PF01743 Poly A polymerase head domain 51 179 1.5E-36 T 14-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Thimo_3510 770e0589be989b2480235f8393319d19 449 Pfam PF12626 Polymerase A arginine-rich C-terminus 323 438 1.3E-42 T 14-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain Thimo_0049 19d4b31d0ec2872043dcdfc77bedf7cc 236 SUPERFAMILY SSF54523 166 225 8.63E-5 T 14-10-2018 Thimo_0049 19d4b31d0ec2872043dcdfc77bedf7cc 236 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 28 1.9E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0049 19d4b31d0ec2872043dcdfc77bedf7cc 236 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0049 19d4b31d0ec2872043dcdfc77bedf7cc 236 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 6.7E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82714 725 806 6.15E-7 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82866 810 1037 1.44E-41 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82714 182 261 6.02E-11 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:1.20.1640.10 508 1028 2.3E-237 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82693 136 326 1.53E-10 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.70.1440 673 875 2.3E-237 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.70.1430 41 821 2.3E-237 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82866 293 491 5.62E-39 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 SUPERFAMILY SSF82693 47 131 2.46E-16 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.70.1430 566 672 2.3E-237 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:1.20.1640.10 12 507 2.3E-237 T 14-10-2018 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 1.2E-28 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.2E-28 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.2E-28 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 1.2E-28 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.2E-28 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.2E-28 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.2090.10 725 813 2.3E-237 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Pfam PF00873 AcrB/AcrD/AcrF family 5 1030 7.3E-166 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.2090.10 179 272 2.3E-237 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_1602 08918a105b1e7c51bfea548a8a752d99 1055 Gene3D G3DSA:3.30.70.1320 134 326 2.3E-237 T 14-10-2018 Thimo_2947 cbfe28d9d221967ae6597e7ccae84e12 471 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 147 455 6.2E-129 T 14-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2947 cbfe28d9d221967ae6597e7ccae84e12 471 SUPERFAMILY SSF54966 4 141 2.62E-53 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2947 cbfe28d9d221967ae6597e7ccae84e12 471 Gene3D G3DSA:3.20.20.110 143 471 2.7E-152 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2947 cbfe28d9d221967ae6597e7ccae84e12 471 Hamap MF_01338 Ribulose bisphosphate carboxylase large chain [rbcL]. 2 468 58.505 T 14-10-2018 IPR020888 Ribulose bisphosphate carboxylase large subunit, type I GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2947 cbfe28d9d221967ae6597e7ccae84e12 471 Gene3D G3DSA:3.30.70.150 16 141 1.0E-45 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2947 cbfe28d9d221967ae6597e7ccae84e12 471 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 17 137 4.1E-41 T 14-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2947 cbfe28d9d221967ae6597e7ccae84e12 471 SUPERFAMILY SSF51649 142 466 2.09E-141 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3373 0f0c921383e72d78a3ffcc5a1bee8734 419 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 97 105 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Thimo_3373 0f0c921383e72d78a3ffcc5a1bee8734 419 Gene3D G3DSA:3.90.550.10 1 289 3.2E-82 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3373 0f0c921383e72d78a3ffcc5a1bee8734 419 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 12 31 - T 14-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Thimo_3373 0f0c921383e72d78a3ffcc5a1bee8734 419 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 3 402 42.38 T 14-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Thimo_3373 0f0c921383e72d78a3ffcc5a1bee8734 419 SUPERFAMILY SSF53448 4 356 3.99E-72 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3373 0f0c921383e72d78a3ffcc5a1bee8734 419 SUPERFAMILY SSF51161 304 391 2.91E-16 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_3373 0f0c921383e72d78a3ffcc5a1bee8734 419 Pfam PF00483 Nucleotidyl transferase 8 274 2.3E-61 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Thimo_3373 0f0c921383e72d78a3ffcc5a1bee8734 419 Gene3D G3DSA:2.160.10.10 290 408 3.0E-29 T 14-10-2018 Thimo_1060 93bedc8712314ca51f79f93f5bd5494e 367 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 362 55.233 T 14-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Thimo_1060 93bedc8712314ca51f79f93f5bd5494e 367 Gene3D G3DSA:3.20.20.105 1 365 5.5E-159 T 14-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Thimo_1060 93bedc8712314ca51f79f93f5bd5494e 367 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 363 4.8E-159 T 14-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Thimo_1060 93bedc8712314ca51f79f93f5bd5494e 367 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 359 5.1E-84 T 14-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Thimo_1060 93bedc8712314ca51f79f93f5bd5494e 367 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 362 2.6E-152 T 14-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Thimo_1060 93bedc8712314ca51f79f93f5bd5494e 367 SUPERFAMILY SSF51713 1 360 3.4E-156 T 14-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Thimo_0178 baa9db18a4c687b83ddbeebe788959b4 109 Gene3D G3DSA:3.30.70.120 1 108 2.7E-42 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_0178 baa9db18a4c687b83ddbeebe788959b4 109 Pfam PF03091 CutA1 divalent ion tolerance protein 7 102 8.2E-39 T 14-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 Thimo_0178 baa9db18a4c687b83ddbeebe788959b4 109 SUPERFAMILY SSF54913 2 104 5.19E-40 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_1767 35cbee92f7ea5b43809144b5e1323de7 509 Gene3D G3DSA:1.10.150.130 95 200 4.5E-16 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Thimo_1767 35cbee92f7ea5b43809144b5e1323de7 509 Pfam PF00589 Phage integrase family 202 415 9.1E-19 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Thimo_1767 35cbee92f7ea5b43809144b5e1323de7 509 Gene3D G3DSA:3.30.160.390 1 92 2.7E-9 T 14-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Thimo_1767 35cbee92f7ea5b43809144b5e1323de7 509 SUPERFAMILY SSF56349 98 426 6.47E-52 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Thimo_1767 35cbee92f7ea5b43809144b5e1323de7 509 Pfam PF13356 Arm DNA-binding domain 3 92 3.2E-14 T 14-10-2018 IPR025166 Integrase, DNA-binding domain Thimo_1416 08f4bc6dffea9d672cf250c79415cd36 373 Gene3D G3DSA:3.40.50.2000 193 351 3.4E-38 T 14-10-2018 Thimo_1416 08f4bc6dffea9d672cf250c79415cd36 373 Gene3D G3DSA:3.40.50.2000 3 188 4.1E-10 T 14-10-2018 Thimo_1416 08f4bc6dffea9d672cf250c79415cd36 373 Pfam PF13439 Glycosyltransferase Family 4 19 179 4.7E-10 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1416 08f4bc6dffea9d672cf250c79415cd36 373 Pfam PF00534 Glycosyl transferases group 1 195 335 4.2E-29 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1416 08f4bc6dffea9d672cf250c79415cd36 373 SUPERFAMILY SSF53756 11 347 1.63E-61 T 14-10-2018 Thimo_2457 e7725f1b0e5dbe7dab9132130e2a71ad 176 Gene3D G3DSA:1.10.10.10 109 173 3.4E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2457 e7725f1b0e5dbe7dab9132130e2a71ad 176 Pfam PF08281 Sigma-70, region 4 114 165 1.7E-14 T 14-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_2457 e7725f1b0e5dbe7dab9132130e2a71ad 176 SUPERFAMILY SSF88659 108 169 3.74E-16 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_2457 e7725f1b0e5dbe7dab9132130e2a71ad 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 169 1.0E-27 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Thimo_2457 e7725f1b0e5dbe7dab9132130e2a71ad 176 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 32 62 - T 14-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_2457 e7725f1b0e5dbe7dab9132130e2a71ad 176 SUPERFAMILY SSF88946 5 89 7.06E-18 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_2457 e7725f1b0e5dbe7dab9132130e2a71ad 176 Pfam PF04542 Sigma-70 region 2 10 74 3.1E-14 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_2457 e7725f1b0e5dbe7dab9132130e2a71ad 176 Gene3D G3DSA:1.10.1740.10 1 77 1.1E-18 T 14-10-2018 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 5.2E-49 T 14-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 350 363 1.2E-10 T 14-10-2018 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 265 276 1.2E-10 T 14-10-2018 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00096 Glutamine amidotransferase superfamily signature 237 246 1.2E-10 T 14-10-2018 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 379 48.189 T 14-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 Pfam PF00117 Glutamine amidotransferase class-I 198 373 2.4E-47 T 14-10-2018 IPR017926 Glutamine amidotransferase Thimo_0298 f52134095ea574c764af9404e5ffce70 380 Gene3D G3DSA:3.40.50.880 152 379 7.4E-75 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0298 f52134095ea574c764af9404e5ffce70 380 SMART SM01097 3 133 2.8E-86 T 14-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 376 5.9E-143 T 14-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 SUPERFAMILY SSF52317 153 378 9.02E-63 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0298 f52134095ea574c764af9404e5ffce70 380 SUPERFAMILY SSF52021 3 138 3.92E-54 T 14-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 Gene3D G3DSA:3.50.30.20 3 151 9.6E-56 T 14-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 307 318 2.8E-37 T 14-10-2018 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 234 248 2.8E-37 T 14-10-2018 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 265 281 2.8E-37 T 14-10-2018 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 195 209 2.8E-37 T 14-10-2018 Thimo_0298 f52134095ea574c764af9404e5ffce70 380 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 282 299 2.8E-37 T 14-10-2018 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 459 3.1E-173 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 SUPERFAMILY SSF48163 297 461 6.41E-38 T 14-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 193 201 1.7E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.7E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 177 187 1.7E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.7E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.7E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 32.123 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Gene3D G3DSA:3.40.50.620 1 312 2.1E-134 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Gene3D G3DSA:1.10.10.350 365 467 3.9E-22 T 14-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 SUPERFAMILY SSF52374 3 293 2.04E-113 T 14-10-2018 Thimo_2078 5bfeb7d8b55bcc2774c4b33e06be8cc5 469 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 303 1.6E-108 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Thimo_1551 4ee226f2ea0e1c760a68b3ae0798ac14 216 Pfam PF02254 TrkA-N domain 6 117 3.0E-18 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Thimo_1551 4ee226f2ea0e1c760a68b3ae0798ac14 216 Gene3D G3DSA:3.40.50.720 1 135 1.9E-28 T 14-10-2018 Thimo_1551 4ee226f2ea0e1c760a68b3ae0798ac14 216 SUPERFAMILY SSF51735 2 142 1.44E-23 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1551 4ee226f2ea0e1c760a68b3ae0798ac14 216 Gene3D G3DSA:3.30.70.1450 143 214 8.4E-7 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1551 4ee226f2ea0e1c760a68b3ae0798ac14 216 Pfam PF02080 TrkA-C domain 161 211 5.9E-8 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Thimo_1551 4ee226f2ea0e1c760a68b3ae0798ac14 216 SUPERFAMILY SSF116726 161 214 6.28E-7 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_0526 6f542b901848af66782b8ff6d89f8ca0 711 Pfam PF02310 B12 binding domain 18 112 4.2E-13 T 14-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Thimo_0526 6f542b901848af66782b8ff6d89f8ca0 711 Pfam PF04055 Radical SAM superfamily 173 336 3.8E-20 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0526 6f542b901848af66782b8ff6d89f8ca0 711 Gene3D G3DSA:3.80.30.20 168 358 3.2E-20 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0526 6f542b901848af66782b8ff6d89f8ca0 711 Gene3D G3DSA:3.40.50.280 19 127 7.0E-9 T 14-10-2018 Thimo_0526 6f542b901848af66782b8ff6d89f8ca0 711 SMART SM00729 167 393 2.9E-23 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0526 6f542b901848af66782b8ff6d89f8ca0 711 SUPERFAMILY SSF52242 35 120 2.47E-5 T 14-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Thimo_0526 6f542b901848af66782b8ff6d89f8ca0 711 SUPERFAMILY SSF102114 165 363 1.01E-31 T 14-10-2018 Thimo_1942 6e8330a1d961fbdd543980873c15b6db 508 Gene3D G3DSA:3.40.50.300 226 394 2.6E-32 T 14-10-2018 Thimo_1942 6e8330a1d961fbdd543980873c15b6db 508 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 266 392 5.3E-25 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_1942 6e8330a1d961fbdd543980873c15b6db 508 Gene3D G3DSA:1.10.8.60 395 480 3.3E-8 T 14-10-2018 Thimo_1942 6e8330a1d961fbdd543980873c15b6db 508 SMART SM00382 262 395 8.7E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1942 6e8330a1d961fbdd543980873c15b6db 508 SUPERFAMILY SSF52540 231 456 1.21E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0948 ab7086da2eaa5bb2a9b4e1717ffab305 186 Pfam PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE 23 181 2.0E-27 T 14-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE Thimo_0948 ab7086da2eaa5bb2a9b4e1717ffab305 186 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 27 181 2.0E-4 T 14-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE Thimo_0948 ab7086da2eaa5bb2a9b4e1717ffab305 186 Gene3D G3DSA:3.30.1460.40 16 156 3.1E-7 T 14-10-2018 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 368 4.4E-94 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 Gene3D G3DSA:3.10.150.10 1 244 7.1E-102 T 14-10-2018 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 SUPERFAMILY SSF55979 1 116 3.38E-21 T 14-10-2018 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 PIRSF PIRSF000804 1 368 5.9E-103 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 245 1.9E-30 T 14-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 SUPERFAMILY SSF55979 128 246 2.2E-22 T 14-10-2018 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 SUPERFAMILY SSF55979 247 368 2.25E-31 T 14-10-2018 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 Gene3D G3DSA:3.70.10.10 137 366 7.1E-102 T 14-10-2018 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 SMART SM00480 17 364 4.6E-105 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 118 1.0E-27 T 14-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Thimo_0004 63cb495c31798add52ab80ce87a92d22 368 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 248 367 4.4E-30 T 14-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Thimo_3145 d82c7340bbb45611b71f164cf423b975 476 Pfam PF02321 Outer membrane efflux protein 61 249 1.5E-17 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Thimo_3145 d82c7340bbb45611b71f164cf423b975 476 Pfam PF02321 Outer membrane efflux protein 281 458 4.0E-31 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Thimo_3145 d82c7340bbb45611b71f164cf423b975 476 Gene3D G3DSA:2.20.200.10 98 349 1.4E-129 T 14-10-2018 Thimo_3145 d82c7340bbb45611b71f164cf423b975 476 Gene3D G3DSA:1.20.1600.10 51 460 1.4E-129 T 14-10-2018 Thimo_3145 d82c7340bbb45611b71f164cf423b975 476 SUPERFAMILY SSF56954 1 461 4.58E-106 T 14-10-2018 Thimo_3145 d82c7340bbb45611b71f164cf423b975 476 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 460 1.1E-118 T 14-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Thimo_1422 22755e8fee4d6b46488f315df64c6e1a 420 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 94 144 3.1E-17 T 14-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain Thimo_1422 22755e8fee4d6b46488f315df64c6e1a 420 Pfam PF01610 Transposase 159 383 2.7E-57 T 14-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain Thimo_1422 22755e8fee4d6b46488f315df64c6e1a 420 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 44 88 5.8E-13 T 14-10-2018 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger Thimo_0939 b0c12da1a9e1008d3f558073c7d1f0b9 432 Pfam PF01593 Flavin containing amine oxidoreductase 14 269 1.6E-22 T 14-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Thimo_0939 b0c12da1a9e1008d3f558073c7d1f0b9 432 Gene3D G3DSA:3.50.50.60 2 266 1.6E-28 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0939 b0c12da1a9e1008d3f558073c7d1f0b9 432 SUPERFAMILY SSF51905 7 415 7.77E-52 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3125 2b167a7d5ae24f2325e5cee162e934dd 293 SMART SM00382 29 203 1.4E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3125 2b167a7d5ae24f2325e5cee162e934dd 293 SUPERFAMILY SSF52540 2 217 1.36E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3125 2b167a7d5ae24f2325e5cee162e934dd 293 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_3125 2b167a7d5ae24f2325e5cee162e934dd 293 Gene3D G3DSA:3.40.50.300 2 225 1.1E-65 T 14-10-2018 Thimo_3125 2b167a7d5ae24f2325e5cee162e934dd 293 Pfam PF00005 ABC transporter 21 155 1.7E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 Pfam PF00072 Response regulator receiver domain 8 118 1.9E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 SUPERFAMILY SSF55073 139 293 1.02E-45 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 SUPERFAMILY SSF52172 3 134 4.84E-42 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 SMART SM00267 123 295 2.6E-52 T 14-10-2018 IPR000160 GGDEF domain Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 Pfam PF00990 Diguanylate cyclase, GGDEF domain 134 291 4.0E-39 T 14-10-2018 IPR000160 GGDEF domain Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 130 293 9.9E-44 T 14-10-2018 IPR000160 GGDEF domain Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 SMART SM00448 6 117 5.8E-41 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 Gene3D G3DSA:3.30.70.270 131 297 2.6E-52 T 14-10-2018 Thimo_1607 4794a8db4d096dd7e37897ce073ca092 310 Gene3D G3DSA:3.40.50.2300 1 130 8.9E-41 T 14-10-2018 Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 Pfam PF13522 Glutamine amidotransferase domain 64 185 5.6E-21 T 14-10-2018 Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 Gene3D G3DSA:3.40.50.10490 250 609 2.1E-147 T 14-10-2018 Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 SUPERFAMILY SSF53697 246 610 8.81E-114 T 14-10-2018 Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.754 T 14-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 Gene3D G3DSA:3.60.20.10 2 242 3.6E-77 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 Gene3D G3DSA:3.40.50.10490 448 595 2.1E-147 T 14-10-2018 Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 5.4E-258 T 14-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 SUPERFAMILY SSF56235 2 234 3.0E-71 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 Pfam PF01380 SIS domain 297 419 2.1E-30 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Thimo_1174 e315ce2f614a56dfcced54831c599c71 610 Pfam PF01380 SIS domain 465 592 1.0E-23 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 SMART SM00278 73 92 96.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 SMART SM00278 108 127 0.053 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 SUPERFAMILY SSF47781 66 134 5.93E-20 T 14-10-2018 IPR010994 RuvA domain 2-like Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 Gene3D G3DSA:2.40.50.140 1 65 1.6E-25 T 14-10-2018 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 Gene3D G3DSA:1.10.8.10 154 199 6.3E-15 T 14-10-2018 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 198 1.5E-54 T 14-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 Gene3D G3DSA:1.10.150.20 67 138 1.6E-25 T 14-10-2018 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 Pfam PF14520 Helix-hairpin-helix domain 72 130 1.3E-14 T 14-10-2018 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 SUPERFAMILY SSF46929 157 198 1.57E-9 T 14-10-2018 IPR036267 RuvA, C-terminal domain superfamily Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 Pfam PF07499 RuvA, C-terminal domain 157 198 6.2E-14 T 14-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 Pfam PF01330 RuvA N terminal domain 2 62 4.2E-19 T 14-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 200 30.259 T 14-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Thimo_3611 87ed16e00db84dbbe18a0a542930cac0 202 SUPERFAMILY SSF50249 2 63 1.71E-16 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1733 bb67361e23625094df6f5986003d333b 260 Gene3D G3DSA:3.40.50.620 112 219 1.1E-7 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1733 bb67361e23625094df6f5986003d333b 260 Pfam PF02698 DUF218 domain 80 246 5.9E-34 T 14-10-2018 IPR003848 Domain of unknown function DUF218 Thimo_1604 928089e27c57bf159a7f66730885bb66 852 Pfam PF00905 Penicillin binding protein transpeptidase domain 483 748 4.1E-25 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Thimo_1604 928089e27c57bf159a7f66730885bb66 852 Gene3D G3DSA:2.40.50.140 369 470 1.1E-28 T 14-10-2018 Thimo_1604 928089e27c57bf159a7f66730885bb66 852 SUPERFAMILY SSF56601 265 823 3.86E-116 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Thimo_1604 928089e27c57bf159a7f66730885bb66 852 Pfam PF00912 Transglycosylase 109 283 5.0E-62 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_1604 928089e27c57bf159a7f66730885bb66 852 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 119 783 1.1E-172 T 14-10-2018 Thimo_1604 928089e27c57bf159a7f66730885bb66 852 Gene3D G3DSA:3.40.710.10 471 822 9.9E-98 T 14-10-2018 Thimo_1604 928089e27c57bf159a7f66730885bb66 852 SUPERFAMILY SSF53955 97 310 9.84E-73 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_1604 928089e27c57bf159a7f66730885bb66 852 Gene3D G3DSA:1.10.3810.10 103 300 2.8E-73 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_1604 928089e27c57bf159a7f66730885bb66 852 Pfam PF17092 Penicillin-binding protein OB-like domain 370 476 5.2E-26 T 14-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3278 e39355ec8f0061b7b3373ec6ff926a09 182 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 177 42.061 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Thimo_3278 e39355ec8f0061b7b3373ec6ff926a09 182 Gene3D G3DSA:3.60.20.10 3 178 9.4E-67 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3278 e39355ec8f0061b7b3373ec6ff926a09 182 Pfam PF00227 Proteasome subunit 4 174 3.3E-22 T 14-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 Thimo_3278 e39355ec8f0061b7b3373ec6ff926a09 182 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 177 1.7E-86 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Thimo_3278 e39355ec8f0061b7b3373ec6ff926a09 182 PIRSF PIRSF039093 1 180 2.8E-89 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Thimo_3278 e39355ec8f0061b7b3373ec6ff926a09 182 SUPERFAMILY SSF56235 3 176 1.53E-58 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_1176 3bdeddc19865e7cbf394423106d51a8a 340 SUPERFAMILY SSF52418 75 337 2.62E-94 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_1176 3bdeddc19865e7cbf394423106d51a8a 340 Gene3D G3DSA:3.40.1030.10 72 339 7.4E-106 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_1176 3bdeddc19865e7cbf394423106d51a8a 340 Pfam PF02885 Glycosyl transferase family, helical bundle domain 4 64 2.0E-19 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_1176 3bdeddc19865e7cbf394423106d51a8a 340 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 334 5.2E-125 T 14-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Thimo_1176 3bdeddc19865e7cbf394423106d51a8a 340 Pfam PF00591 Glycosyl transferase family, a/b domain 76 325 5.3E-98 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_1176 3bdeddc19865e7cbf394423106d51a8a 340 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 335 38.22 T 14-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Thimo_1176 3bdeddc19865e7cbf394423106d51a8a 340 Gene3D G3DSA:1.20.970.10 1 70 2.0E-27 T 14-10-2018 Thimo_1176 3bdeddc19865e7cbf394423106d51a8a 340 SUPERFAMILY SSF47648 1 69 6.15E-20 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Gene3D G3DSA:1.10.150.80 520 599 5.3E-22 T 14-10-2018 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF00570 HRDC domain 529 593 2.6E-20 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Gene3D G3DSA:3.40.50.300 201 334 1.2E-37 T 14-10-2018 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 7 458 2.1E-154 T 14-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 SMART SM00341 524 604 1.5E-19 T 14-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Gene3D G3DSA:1.10.10.10 335 519 4.4E-50 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF00271 Helicase conserved C-terminal domain 218 324 8.5E-16 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 SUPERFAMILY SSF52540 200 451 5.74E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 SUPERFAMILY SSF52540 6 189 1.12E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF16124 RecQ zinc-binding 339 399 5.1E-19 T 14-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF14493 Helix-turn-helix domain 610 701 3.6E-15 T 14-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 SMART SM00490 243 325 4.1E-22 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 SMART SM00956 406 509 3.5E-52 T 14-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 SUPERFAMILY SSF47819 523 599 2.18E-20 T 14-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 7 596 2.6E-237 T 14-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF00270 DEAD/DEAH box helicase 22 177 1.1E-17 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 SMART SM00487 14 210 2.0E-29 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Gene3D G3DSA:3.40.50.300 1 200 4.4E-78 T 14-10-2018 Thimo_3098 1ab275804d453d144b1483dbbeee21d0 716 Pfam PF09382 RQC domain 401 513 3.8E-40 T 14-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Thimo_3662 139bceb0e474bc353ed1c2ee5cf4a21d 240 SUPERFAMILY SSF53098 43 228 4.25E-36 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_3662 139bceb0e474bc353ed1c2ee5cf4a21d 240 SMART SM00479 49 230 9.6E-19 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_3662 139bceb0e474bc353ed1c2ee5cf4a21d 240 Pfam PF00929 Exonuclease 51 221 1.1E-10 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_3662 139bceb0e474bc353ed1c2ee5cf4a21d 240 Gene3D G3DSA:3.30.420.10 47 231 5.1E-32 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_0233 1168e4c7d10e0a1fe139e31d27f387d8 331 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 14 321 3.7E-83 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Thimo_0233 1168e4c7d10e0a1fe139e31d27f387d8 331 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 8 326 21.8 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Thimo_0233 1168e4c7d10e0a1fe139e31d27f387d8 331 Pfam PF03116 NQR2, RnfD, RnfE family 12 322 4.5E-100 T 14-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 Thimo_3223 eaf5fe8060f497c59fbc962909fc6fb7 98 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 18 64 6.8E-12 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_3223 eaf5fe8060f497c59fbc962909fc6fb7 98 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 18 62 5.3E-13 T 14-10-2018 Thimo_3223 eaf5fe8060f497c59fbc962909fc6fb7 98 Gene3D G3DSA:3.40.1620.10 14 64 6.0E-22 T 14-10-2018 Thimo_3223 eaf5fe8060f497c59fbc962909fc6fb7 98 SUPERFAMILY SSF143120 18 63 1.24E-9 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_2464 7853a7d4d36168b010d37d67d2cd7825 247 Gene3D G3DSA:3.30.70.270 183 232 2.8E-6 T 14-10-2018 Thimo_2464 7853a7d4d36168b010d37d67d2cd7825 247 Pfam PF08448 PAS fold 75 183 8.4E-9 T 14-10-2018 IPR013656 PAS fold-4 Thimo_2464 7853a7d4d36168b010d37d67d2cd7825 247 SMART SM00091 68 134 1.5E-5 T 14-10-2018 IPR000014 PAS domain Thimo_2464 7853a7d4d36168b010d37d67d2cd7825 247 SUPERFAMILY SSF55785 56 179 1.38E-16 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2464 7853a7d4d36168b010d37d67d2cd7825 247 Gene3D G3DSA:3.30.450.20 55 179 2.9E-15 T 14-10-2018 Thimo_2464 7853a7d4d36168b010d37d67d2cd7825 247 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 66 182 3.9E-9 T 14-10-2018 IPR000014 PAS domain Thimo_3542 dc3ebbe8cb85e07d6b5218cbe27c816b 373 Pfam PF01595 Domain of unknown function DUF21 7 184 1.5E-29 T 14-10-2018 IPR002550 CNNM, transmembrane domain Thimo_3542 dc3ebbe8cb85e07d6b5218cbe27c816b 373 SUPERFAMILY SSF54631 188 331 1.89E-21 T 14-10-2018 Thimo_3542 dc3ebbe8cb85e07d6b5218cbe27c816b 373 Gene3D G3DSA:3.10.580.10 179 331 3.6E-37 T 14-10-2018 Thimo_3542 dc3ebbe8cb85e07d6b5218cbe27c816b 373 Pfam PF00571 CBS domain 270 320 2.1E-7 T 14-10-2018 IPR000644 CBS domain Thimo_0114 f3347770a5c063d3cbad46f00dc42bf7 407 TIGRFAM TIGR00261 traB: TraB family protein 26 402 1.9E-83 T 14-10-2018 IPR005230 Pheromone shutdown, TraB, bacterial/archaeal Thimo_0114 f3347770a5c063d3cbad46f00dc42bf7 407 Pfam PF01963 TraB family 23 245 3.0E-26 T 14-10-2018 IPR002816 Pheromone shutdown, TraB Thimo_2870 bba33c4e69513b7b9173dc446e4242d3 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 226 2.4E-101 T 14-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Thimo_2870 bba33c4e69513b7b9173dc446e4242d3 231 Gene3D G3DSA:3.40.50.790 68 159 2.0E-75 T 14-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Thimo_2870 bba33c4e69513b7b9173dc446e4242d3 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 14-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2870 bba33c4e69513b7b9173dc446e4242d3 231 PIRSF PIRSF002155 1 227 4.2E-74 T 14-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2870 bba33c4e69513b7b9173dc446e4242d3 231 Pfam PF00687 Ribosomal protein L1p/L10e family 30 220 1.4E-48 T 14-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Thimo_2870 bba33c4e69513b7b9173dc446e4242d3 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.943 T 14-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Thimo_2870 bba33c4e69513b7b9173dc446e4242d3 231 SUPERFAMILY SSF56808 6 226 6.41E-79 T 14-10-2018 IPR023674 Ribosomal protein L1-like Thimo_2870 bba33c4e69513b7b9173dc446e4242d3 231 Gene3D G3DSA:3.30.190.20 25 221 2.0E-75 T 14-10-2018 Thimo_1885 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 Gene3D G3DSA:3.40.109.10 4 196 3.4E-29 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Thimo_1885 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 Pfam PF00881 Nitroreductase family 17 159 1.8E-15 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Thimo_1885 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 Hamap MF_01204 Probable malonic semialdehyde reductase RutE [rutE]. 2 197 44.345 T 14-10-2018 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE GO:0016491|GO:0055114 Thimo_1885 de9e50ef1d109b9b3d5d0ca0eaca7fad 197 SUPERFAMILY SSF55469 10 195 2.36E-41 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Thimo_2807 9d18afbe31b92f9de77f85edf0a4c5ac 257 SMART SM00382 26 213 9.5E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2807 9d18afbe31b92f9de77f85edf0a4c5ac 257 SUPERFAMILY SSF52540 2 229 5.44E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2807 9d18afbe31b92f9de77f85edf0a4c5ac 257 Gene3D G3DSA:3.40.50.300 1 253 3.2E-68 T 14-10-2018 Thimo_2807 9d18afbe31b92f9de77f85edf0a4c5ac 257 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2807 9d18afbe31b92f9de77f85edf0a4c5ac 257 Pfam PF00005 ABC transporter 17 166 3.0E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 Hamap MF_01113 DNA polymerase IV [dinB]. 1 348 31.492 T 14-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 Gene3D G3DSA:2.30.40.20 8 68 1.8E-23 T 14-10-2018 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 Gene3D G3DSA:1.10.150.20 167 226 5.9E-14 T 14-10-2018 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 Gene3D G3DSA:3.30.70.270 69 166 1.4E-27 T 14-10-2018 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 SUPERFAMILY SSF56672 1 234 6.14E-70 T 14-10-2018 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 Pfam PF11799 impB/mucB/samB family C-terminal domain 234 344 1.3E-18 T 14-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 Pfam PF00817 impB/mucB/samB family 3 151 7.9E-42 T 14-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 SUPERFAMILY SSF100879 236 337 4.91E-25 T 14-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Thimo_2363 5f3f800b78d5af0446cf1a535dbfc831 387 Gene3D G3DSA:3.30.1490.100 238 343 1.7E-22 T 14-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 SMART SM00859 3 123 3.3E-27 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 369 32.715 T 14-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 Gene3D G3DSA:3.30.360.10 141 352 3.8E-80 T 14-10-2018 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 SUPERFAMILY SSF55347 135 356 5.89E-74 T 14-10-2018 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 SUPERFAMILY SSF51735 1 148 2.24E-43 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 3 369 2.0E-178 T 14-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 122 2.0E-19 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 Gene3D G3DSA:3.40.50.720 1 140 5.4E-51 T 14-10-2018 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 PIRSF PIRSF000148 1 372 1.2E-61 T 14-10-2018 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 263 277 - T 14-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Thimo_2653 fb3fe75ae8122eb9e121bb8a99103130 373 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 146 355 1.8E-53 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Gene3D G3DSA:3.90.930.1 191 346 4.2E-10 T 14-10-2018 Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Gene3D G3DSA:3.90.930.1 348 520 2.8E-12 T 14-10-2018 Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Gene3D G3DSA:2.180.10.10 716 1007 6.9E-16 T 14-10-2018 Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Gene3D G3DSA:2.180.10.10 1008 1255 2.3E-32 T 14-10-2018 Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Gene3D G3DSA:2.180.10.10 521 638 2.8E-7 T 14-10-2018 Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 495 531 1.9E-9 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 537 573 2.4E-10 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 453 488 2.5E-12 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 794 829 1.4E-5 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 375 401 4.5E-7 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 239 271 4.5E-7 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 257 293 2.4E-10 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 689 726 3.7E-10 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 481 511 8.4E-7 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 621 656 8.6E-6 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 710 744 6.8E-9 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 752 787 2.7E-7 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 579 614 5.7E-7 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF05593 RHS Repeat 885 920 5.6E-9 T 14-10-2018 IPR031325 RHS repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 SUPERFAMILY SSF101908 397 633 5.23E-5 T 14-10-2018 Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 Pfam PF03527 RHS protein 1147 1182 2.6E-7 T 14-10-2018 IPR001826 RHS protein Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1175 1255 3.3E-20 T 14-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 516 554 3.1E-10 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 689 728 2.6E-10 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 238 277 1.0E-8 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 752 781 3.9E-5 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 257 296 6.0E-8 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 600 635 0.0014 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 885 922 9.7E-7 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 374 405 2.7E-7 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 794 824 2.1E-4 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 447 473 1.1E-5 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 642 677 1.3E-4 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 474 514 7.5E-10 T 14-10-2018 IPR006530 YD repeat Thimo_1753 f40f13dea2b3f53f9cc92b64dc981f4e 1392 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 558 599 1.2E-5 T 14-10-2018 IPR006530 YD repeat Thimo_3317 8539f5ab17f51f2739bf74e1d7c7dc95 498 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 8 478 2.8E-95 T 14-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Thimo_3317 8539f5ab17f51f2739bf74e1d7c7dc95 498 SUPERFAMILY SSF51445 15 495 1.38E-159 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_3317 8539f5ab17f51f2739bf74e1d7c7dc95 498 Pfam PF02446 4-alpha-glucanotransferase 21 474 8.1E-146 T 14-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Thimo_3317 8539f5ab17f51f2739bf74e1d7c7dc95 498 Gene3D G3DSA:3.20.20.80 11 496 2.7E-177 T 14-10-2018 Thimo_2952 65ca295d879b25058b10023ded6be5a7 97 SUPERFAMILY SSF159133 1 82 4.19E-23 T 14-10-2018 IPR036677 EutN/Ccml superfamily Thimo_2952 65ca295d879b25058b10023ded6be5a7 97 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 10 79 9.0E-22 T 14-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Thimo_2952 65ca295d879b25058b10023ded6be5a7 97 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 77 4.3E-18 T 14-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Thimo_2952 65ca295d879b25058b10023ded6be5a7 97 Gene3D G3DSA:2.40.50.220 1 89 4.9E-27 T 14-10-2018 IPR036677 EutN/Ccml superfamily Thimo_2952 65ca295d879b25058b10023ded6be5a7 97 TIGRFAM TIGR02704 carboxysome_B: carboxysome peptide B 1 80 2.2E-39 T 14-10-2018 IPR014077 Carboxysome peptide B Thimo_0829 ad8fea43fa35796705dba5754e6eba35 160 Pfam PF03788 LrgA family 43 143 2.2E-24 T 14-10-2018 IPR005538 LrgA/CidA family GO:0016021 Thimo_3138 dce95a05f6257bea6a3bc6700df19aee 345 SUPERFAMILY SSF51735 3 320 2.8E-96 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3138 dce95a05f6257bea6a3bc6700df19aee 345 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 4 325 8.2E-139 T 14-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Thimo_3138 dce95a05f6257bea6a3bc6700df19aee 345 Gene3D G3DSA:3.40.50.720 5 253 2.4E-130 T 14-10-2018 Thimo_3138 dce95a05f6257bea6a3bc6700df19aee 345 Gene3D G3DSA:3.90.25.10 174 307 2.4E-130 T 14-10-2018 Thimo_3138 dce95a05f6257bea6a3bc6700df19aee 345 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 308 2.4E-62 T 14-10-2018 IPR016040 NAD(P)-binding domain Thimo_1460 15c6afeb934050a163ca2cba86fdb9a3 255 SUPERFAMILY SSF55729 18 224 1.77E-39 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_1460 15c6afeb934050a163ca2cba86fdb9a3 255 Gene3D G3DSA:3.40.630.30 18 158 2.9E-27 T 14-10-2018 Thimo_1460 15c6afeb934050a163ca2cba86fdb9a3 255 Pfam PF13444 Acetyltransferase (GNAT) domain 33 133 4.4E-32 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 298 1.3E-59 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 163 188 2.3E-14 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.3E-14 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 249 263 2.3E-14 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 290 297 2.3E-14 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 SUPERFAMILY SSF55424 337 460 1.2E-24 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 Gene3D G3DSA:3.50.50.60 7 354 1.2E-150 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 Pfam PF00581 Rhodanese-like domain 469 561 4.3E-9 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 Gene3D G3DSA:3.40.250.10 454 565 3.8E-21 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 344 447 1.4E-13 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 Gene3D G3DSA:3.50.50.60 125 453 1.2E-150 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 SUPERFAMILY SSF51905 2 327 4.46E-40 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 116 134 6.2E-25 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 6.2E-25 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 6.2E-25 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 163 181 6.2E-25 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 264 6.2E-25 T 14-10-2018 Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 SMART SM00450 469 567 2.8E-14 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_1588 31f538137f6e36d45144cbd6401e53d8 567 SUPERFAMILY SSF52821 449 561 1.57E-24 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 Gene3D G3DSA:3.40.50.10490 19 210 2.9E-62 T 14-10-2018 Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 SUPERFAMILY SSF53697 29 336 2.89E-65 T 14-10-2018 Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 PIRSF PIRSF004692 11 339 3.9E-129 T 14-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 Gene3D G3DSA:3.10.580.10 211 336 4.7E-44 T 14-10-2018 Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 Pfam PF01380 SIS domain 55 187 9.7E-29 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 60 329 2.6E-107 T 14-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 Pfam PF00571 CBS domain 216 272 1.2E-8 T 14-10-2018 IPR000644 CBS domain Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 Pfam PF00571 CBS domain 285 336 3.4E-5 T 14-10-2018 IPR000644 CBS domain Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 SMART SM00116 290 338 2.6 T 14-10-2018 IPR000644 CBS domain Thimo_2756 61bec7091609ae1ecb3f687b34a1f034 339 SMART SM00116 225 273 2.3E-5 T 14-10-2018 IPR000644 CBS domain Thimo_0896 80a02329a3890a3a49a70d0634dc9c6e 180 SUPERFAMILY SSF117782 97 180 1.57E-10 T 14-10-2018 IPR035439 UPF0145 domain superfamily Thimo_0896 80a02329a3890a3a49a70d0634dc9c6e 180 Pfam PF01906 Putative heavy-metal-binding 123 179 2.6E-6 T 14-10-2018 IPR002765 Uncharacterised protein family UPF0145 Thimo_0896 80a02329a3890a3a49a70d0634dc9c6e 180 Gene3D G3DSA:3.30.110.70 104 180 7.0E-8 T 14-10-2018 Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 Gene3D G3DSA:3.10.420.10 1 156 9.4E-57 T 14-10-2018 IPR035958 SecB-like superfamily Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 Pfam PF02556 Preprotein translocase subunit SecB 7 145 1.3E-55 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 147 32.261 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 75 95 1.6E-34 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 99 121 1.6E-34 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 125 143 1.6E-34 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 15 32 1.6E-34 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 SUPERFAMILY SSF54611 4 144 2.62E-50 T 14-10-2018 IPR035958 SecB-like superfamily Thimo_3673 5e6bff2f4d3c0a4ff4f58f48f8e31daf 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 8 144 3.7E-51 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Thimo_1395 53b69d021cca0c65b57d1a98714a9d5a 120 Pfam PF04358 DsrC like protein 16 115 3.2E-30 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_1395 53b69d021cca0c65b57d1a98714a9d5a 120 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 16 115 6.1E-27 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_1395 53b69d021cca0c65b57d1a98714a9d5a 120 Gene3D G3DSA:3.30.1420.10 15 46 5.1E-6 T 14-10-2018 Thimo_1395 53b69d021cca0c65b57d1a98714a9d5a 120 SUPERFAMILY SSF69721 16 116 1.27E-26 T 14-10-2018 IPR025526 DsrC-like domain superfamily Thimo_1395 53b69d021cca0c65b57d1a98714a9d5a 120 Gene3D G3DSA:1.10.10.370 47 116 1.7E-20 T 14-10-2018 Thimo_1395 53b69d021cca0c65b57d1a98714a9d5a 120 PIRSF PIRSF006223 11 117 1.4E-29 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_2009 094ac7a3149ffdc53b37561bb6859967 287 Gene3D G3DSA:3.40.50.300 49 191 2.7E-11 T 14-10-2018 Thimo_2009 094ac7a3149ffdc53b37561bb6859967 287 Pfam PF05673 Protein of unknown function (DUF815) 33 285 4.3E-105 T 14-10-2018 IPR008533 Domain of unknown function DUF815 Thimo_2009 094ac7a3149ffdc53b37561bb6859967 287 SUPERFAMILY SSF52540 44 189 1.12E-27 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 540 24.647 T 14-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 358 2.0E-109 T 14-10-2018 IPR028053 Membrane insertase YidC, N-terminal Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 Pfam PF02096 60Kd inner membrane protein 360 538 1.9E-60 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR01900 YidC translocation/secretion protein signature 345 361 1.2E-24 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR01900 YidC translocation/secretion protein signature 474 489 1.2E-24 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR01900 YidC translocation/secretion protein signature 493 517 1.2E-24 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 Gene3D G3DSA:2.70.98.90 71 339 2.3E-91 T 14-10-2018 IPR038221 YidC, periplasmic domain superfamily Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 Pfam PF14849 YidC periplasmic domain 75 349 9.2E-86 T 14-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 257 272 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 504 527 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 170 190 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 421 444 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 224 242 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 330 350 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 468 490 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 2 23 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 PRINTS PR00701 60kDa inner membrane protein signature 80 101 9.4E-84 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Thimo_3702 832e00b6902ceb15b1792c3bf222fafa 546 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 359 538 4.6E-71 T 14-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0269 ca07e9d916d723fd892ad1a508f11d30 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 94 107 1.3E-12 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Thimo_0269 ca07e9d916d723fd892ad1a508f11d30 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 73 89 1.3E-12 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Thimo_0269 ca07e9d916d723fd892ad1a508f11d30 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 38 54 1.3E-12 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Thimo_0269 ca07e9d916d723fd892ad1a508f11d30 109 Pfam PF02049 Flagellar hook-basal body complex protein FliE 29 109 3.1E-28 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Thimo_0269 ca07e9d916d723fd892ad1a508f11d30 109 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 1 109 16.837 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Thimo_0269 ca07e9d916d723fd892ad1a508f11d30 109 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 35 109 4.2E-20 T 14-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Thimo_2704 bc97a027c1a1c9f52bb4ee27406126d9 381 SUPERFAMILY SSF52418 99 380 2.75E-37 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_2704 bc97a027c1a1c9f52bb4ee27406126d9 381 Pfam PF02885 Glycosyl transferase family, helical bundle domain 25 88 8.1E-13 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_2704 bc97a027c1a1c9f52bb4ee27406126d9 381 Gene3D G3DSA:3.40.1030.10 95 381 6.1E-51 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_2704 bc97a027c1a1c9f52bb4ee27406126d9 381 Pfam PF00591 Glycosyl transferase family, a/b domain 123 291 2.3E-5 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_2704 bc97a027c1a1c9f52bb4ee27406126d9 381 Gene3D G3DSA:1.20.970.10 21 91 5.7E-18 T 14-10-2018 Thimo_2704 bc97a027c1a1c9f52bb4ee27406126d9 381 SUPERFAMILY SSF47648 23 91 1.57E-12 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Thimo_2223 718124001bd4e72a748a3a8f0147cfb2 335 TIGRFAM TIGR00238 TIGR00238: KamA family protein 46 327 1.6E-87 T 14-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Thimo_2223 718124001bd4e72a748a3a8f0147cfb2 335 Pfam PF04055 Radical SAM superfamily 115 262 2.4E-8 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_2223 718124001bd4e72a748a3a8f0147cfb2 335 SUPERFAMILY SSF102114 102 323 1.57E-23 T 14-10-2018 Thimo_2223 718124001bd4e72a748a3a8f0147cfb2 335 Pfam PF13353 4Fe-4S single cluster domain 109 182 9.1E-7 T 14-10-2018 Thimo_2223 718124001bd4e72a748a3a8f0147cfb2 335 PIRSF PIRSF004911 7 335 1.5E-105 T 14-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Thimo_2223 718124001bd4e72a748a3a8f0147cfb2 335 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 14 334 2.5E-132 T 14-10-2018 IPR022462 Lysine-2,3-aminomutase-like Thimo_2223 718124001bd4e72a748a3a8f0147cfb2 335 Gene3D G3DSA:3.20.20.70 50 332 5.1E-82 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0120 0c9cc94e222169d489df6e38e6990bfb 367 PIRSF PIRSF001361 2 364 3.1E-140 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Thimo_0120 0c9cc94e222169d489df6e38e6990bfb 367 SUPERFAMILY SSF51569 25 358 6.91E-115 T 14-10-2018 Thimo_0120 0c9cc94e222169d489df6e38e6990bfb 367 Pfam PF00793 DAHP synthetase I family 56 350 1.7E-81 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Thimo_0120 0c9cc94e222169d489df6e38e6990bfb 367 Gene3D G3DSA:3.20.20.70 23 361 2.2E-135 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0120 0c9cc94e222169d489df6e38e6990bfb 367 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 25 358 1.9E-132 T 14-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Thimo_2610 6a2004d76ff5123a2412e8015100a3cc 232 Gene3D G3DSA:2.60.120.10 38 153 2.3E-26 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_2610 6a2004d76ff5123a2412e8015100a3cc 232 Gene3D G3DSA:1.10.10.10 155 231 3.2E-13 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2610 6a2004d76ff5123a2412e8015100a3cc 232 Pfam PF13545 Crp-like helix-turn-helix domain 158 226 6.3E-14 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_2610 6a2004d76ff5123a2412e8015100a3cc 232 SUPERFAMILY SSF46785 156 228 8.66E-11 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2610 6a2004d76ff5123a2412e8015100a3cc 232 Pfam PF00027 Cyclic nucleotide-binding domain 42 122 1.4E-14 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_2610 6a2004d76ff5123a2412e8015100a3cc 232 SMART SM00419 172 219 0.0019 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_2610 6a2004d76ff5123a2412e8015100a3cc 232 SMART SM00100 21 138 5.9E-8 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_2610 6a2004d76ff5123a2412e8015100a3cc 232 SUPERFAMILY SSF51206 14 152 3.8E-27 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_3738 63d57d345fa9d18c7f29b08aba860287 347 Gene3D G3DSA:3.90.1530.30 35 100 5.4E-23 T 14-10-2018 Thimo_3738 63d57d345fa9d18c7f29b08aba860287 347 Pfam PF08535 KorB domain 136 205 1.5E-5 T 14-10-2018 IPR013741 Repressor KorB domain Thimo_3738 63d57d345fa9d18c7f29b08aba860287 347 Pfam PF02195 ParB-like nuclease domain 23 114 4.8E-23 T 14-10-2018 IPR003115 ParB/Sulfiredoxin Thimo_3738 63d57d345fa9d18c7f29b08aba860287 347 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 19 153 1.1E-38 T 14-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Thimo_3738 63d57d345fa9d18c7f29b08aba860287 347 Gene3D G3DSA:1.10.10.2830 101 221 4.5E-13 T 14-10-2018 Thimo_3738 63d57d345fa9d18c7f29b08aba860287 347 SMART SM00470 22 114 2.8E-32 T 14-10-2018 IPR003115 ParB/Sulfiredoxin Thimo_3738 63d57d345fa9d18c7f29b08aba860287 347 SUPERFAMILY SSF110849 24 151 2.44E-28 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Thimo_0536 253dcc88c434af8d9db9d26d5841d047 195 PIRSF PIRSF006305 1 193 8.6E-44 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Thimo_0536 253dcc88c434af8d9db9d26d5841d047 195 Gene3D G3DSA:3.90.950.10 3 193 2.3E-58 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_0536 253dcc88c434af8d9db9d26d5841d047 195 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 30.329 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Thimo_0536 253dcc88c434af8d9db9d26d5841d047 195 SUPERFAMILY SSF52972 2 185 1.11E-55 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_0536 253dcc88c434af8d9db9d26d5841d047 195 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 7.7E-52 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Thimo_0536 253dcc88c434af8d9db9d26d5841d047 195 Pfam PF02545 Maf-like protein 4 186 2.2E-44 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Thimo_1656 80dc93cd2caaae88095ee8bb97f23243 314 Pfam PF00149 Calcineurin-like phosphoesterase 32 253 1.1E-7 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Thimo_1656 80dc93cd2caaae88095ee8bb97f23243 314 SUPERFAMILY SSF56300 30 284 1.32E-19 T 14-10-2018 Thimo_1656 80dc93cd2caaae88095ee8bb97f23243 314 Gene3D G3DSA:3.60.21.10 35 272 7.4E-7 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 Gene3D G3DSA:1.20.120.640 306 464 4.0E-49 T 14-10-2018 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 SMART SM00840 340 401 2.2E-27 T 14-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 464 6.4E-173 T 14-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 1.2E-30 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 1.2E-30 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 1.2E-30 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 1.2E-30 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 Gene3D G3DSA:3.40.50.620 1 305 3.4E-135 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 SUPERFAMILY SSF52374 2 313 4.61E-101 T 14-10-2018 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 313 2.5E-130 T 14-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 465 39.45 T 14-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 Pfam PF09190 DALR domain 340 401 1.2E-21 T 14-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Thimo_0329 65dd2fa3622875f505eaf3f4fe506955 465 SUPERFAMILY SSF47323 316 464 3.4E-38 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3351 a03a514f6103c9b1d82765159f87cc11 411 Pfam PF01609 Transposase DDE domain 101 320 3.9E-10 T 14-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Thimo_3351 a03a514f6103c9b1d82765159f87cc11 411 SUPERFAMILY SSF53098 92 334 5.01E-15 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 Gene3D G3DSA:3.30.565.10 330 489 3.2E-35 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 SMART SM00388 259 325 3.6E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 SMART SM00304 208 259 1.1E-4 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 324 6.6E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 SUPERFAMILY SSF103190 38 181 2.28E-12 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 374 486 7.9E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 429 2.1E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 467 2.1E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 486 2.1E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 443 2.1E-12 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 SMART SM00387 370 489 2.8E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 SUPERFAMILY SSF47384 244 325 1.33E-14 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 Gene3D G3DSA:1.10.287.130 207 321 2.2E-16 T 14-10-2018 Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 SUPERFAMILY SSF55874 315 487 5.37E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2063 b5b36b756b692bbb1937c782003d4303 490 Pfam PF17203 Single cache domain 3 99 177 4.0E-7 T 14-10-2018 IPR033463 Single cache domain 3 Thimo_2760 5c32109544b46899edfb73954f0fb5f8 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 8.4E-6 T 14-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Thimo_2760 5c32109544b46899edfb73954f0fb5f8 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 1.5E-114 T 14-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 Thimo_2760 5c32109544b46899edfb73954f0fb5f8 241 SMART SM00382 28 229 2.1E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2760 5c32109544b46899edfb73954f0fb5f8 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2760 5c32109544b46899edfb73954f0fb5f8 241 SUPERFAMILY SSF52540 3 237 1.93E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2760 5c32109544b46899edfb73954f0fb5f8 241 Gene3D G3DSA:3.40.50.300 2 241 7.3E-69 T 14-10-2018 Thimo_2760 5c32109544b46899edfb73954f0fb5f8 241 Pfam PF00005 ABC transporter 19 166 1.3E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2164 a4cce218bae7e38c1bd37fa9cf63649c 496 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 493 2.5E-202 T 14-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 Thimo_2164 a4cce218bae7e38c1bd37fa9cf63649c 496 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 440 5.9E-99 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Thimo_2164 a4cce218bae7e38c1bd37fa9cf63649c 496 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 422 442 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site Thimo_2164 a4cce218bae7e38c1bd37fa9cf63649c 496 Pfam PF00474 Sodium:solute symporter family 36 440 1.8E-105 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Thimo_2164 a4cce218bae7e38c1bd37fa9cf63649c 496 Gene3D G3DSA:1.20.1730.10 23 488 4.6E-96 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily Thimo_3784 3f10e05ae6a50145d82f24e3a3400dd8 663 Gene3D G3DSA:3.40.50.150 507 663 1.5E-13 T 14-10-2018 Thimo_3784 3f10e05ae6a50145d82f24e3a3400dd8 663 SUPERFAMILY SSF53335 86 662 7.36E-51 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3784 3f10e05ae6a50145d82f24e3a3400dd8 663 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 562 568 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Thimo_3784 3f10e05ae6a50145d82f24e3a3400dd8 663 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 589 613 1.8E-5 T 14-10-2018 Thimo_3784 3f10e05ae6a50145d82f24e3a3400dd8 663 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 231 247 1.8E-5 T 14-10-2018 Thimo_3784 3f10e05ae6a50145d82f24e3a3400dd8 663 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 559 571 1.8E-5 T 14-10-2018 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SMART SM00963 78 159 2.5E-17 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 102 375 61.393 T 14-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 103 374 4.4E-108 T 14-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SMART SM00962 174 375 2.2E-123 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Gene3D G3DSA:3.40.50.300 174 363 1.4E-113 T 14-10-2018 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SMART SM00382 173 380 5.1E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SUPERFAMILY SSF52540 169 375 2.24E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Pfam PF02881 SRP54-type protein, helical bundle domain 89 155 3.5E-9 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 SUPERFAMILY SSF47364 74 153 2.62E-17 T 14-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Gene3D G3DSA:1.20.120.140 75 373 1.4E-113 T 14-10-2018 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 Pfam PF00448 SRP54-type protein, GTPase domain 174 374 7.6E-79 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_3622 3fe24682bcc7ef5e6b3f7b9c0343b3c6 381 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 348 361 - T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_0244 c6894e8f8ee14eb5b4f4157215f6dc29 741 SUPERFAMILY SSF53659 4 740 0.0 T 14-10-2018 Thimo_0244 c6894e8f8ee14eb5b4f4157215f6dc29 741 Gene3D G3DSA:3.40.718.10 411 646 6.5E-9 T 14-10-2018 Thimo_0244 c6894e8f8ee14eb5b4f4157215f6dc29 741 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 3 740 0.0 T 14-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Thimo_0244 c6894e8f8ee14eb5b4f4157215f6dc29 741 Pfam PF03971 Monomeric isocitrate dehydrogenase 6 738 0.0 T 14-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Thimo_0244 c6894e8f8ee14eb5b4f4157215f6dc29 741 PIRSF PIRSF009407 1 741 0.0 T 14-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Thimo_3671 41ec5cd1e8438522fc66d3d2d1874e34 119 SMART SM00418 34 112 6.5E-26 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_3671 41ec5cd1e8438522fc66d3d2d1874e34 119 Gene3D G3DSA:1.10.10.10 12 116 1.5E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3671 41ec5cd1e8438522fc66d3d2d1874e34 119 Pfam PF01022 Bacterial regulatory protein, arsR family 41 85 5.2E-13 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_3671 41ec5cd1e8438522fc66d3d2d1874e34 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 2.4E-12 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_3671 41ec5cd1e8438522fc66d3d2d1874e34 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 83 98 2.4E-12 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_3671 41ec5cd1e8438522fc66d3d2d1874e34 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 51 2.4E-12 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_3671 41ec5cd1e8438522fc66d3d2d1874e34 119 SUPERFAMILY SSF46785 23 116 1.27E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0538 4da0aa1ef79c2a44b6795d70f62e67bf 426 Gene3D G3DSA:2.40.420.20 333 355 8.8E-30 T 14-10-2018 Thimo_0538 4da0aa1ef79c2a44b6795d70f62e67bf 426 Gene3D G3DSA:1.10.287.470 101 220 8.8E-30 T 14-10-2018 Thimo_0538 4da0aa1ef79c2a44b6795d70f62e67bf 426 Pfam PF13437 HlyD family secretion protein 220 281 7.7E-9 T 14-10-2018 Thimo_0538 4da0aa1ef79c2a44b6795d70f62e67bf 426 Gene3D G3DSA:2.40.30.170 56 332 8.8E-30 T 14-10-2018 Thimo_0538 4da0aa1ef79c2a44b6795d70f62e67bf 426 SUPERFAMILY SSF111369 57 278 3.01E-10 T 14-10-2018 Thimo_0538 4da0aa1ef79c2a44b6795d70f62e67bf 426 Gene3D G3DSA:2.40.50.100 67 257 8.8E-30 T 14-10-2018 Thimo_0538 4da0aa1ef79c2a44b6795d70f62e67bf 426 Pfam PF13533 Biotin-lipoyl like 72 116 1.6E-8 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Thimo_3053 14edd9519436c655873db6c712f14b1f 188 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 174 2.8E-69 T 14-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Thimo_3053 14edd9519436c655873db6c712f14b1f 188 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 176 5.0E-59 T 14-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Thimo_3053 14edd9519436c655873db6c712f14b1f 188 SUPERFAMILY SSF51182 3 178 7.33E-71 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Thimo_3053 14edd9519436c655873db6c712f14b1f 188 Gene3D G3DSA:2.60.120.10 2 188 2.2E-67 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_3053 14edd9519436c655873db6c712f14b1f 188 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 175 3.3E-71 T 14-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 Gene3D G3DSA:1.10.10.10 3 121 3.0E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 SUPERFAMILY SSF46785 12 116 8.82E-26 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 SUPERFAMILY SSF50331 130 197 7.78E-20 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 PIRSF PIRSF005763 8 270 3.2E-89 T 14-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 Pfam PF03459 TOBE domain 133 194 1.8E-15 T 14-10-2018 IPR005116 Transport-associated OB, type 1 Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 Pfam PF03459 TOBE domain 203 266 4.5E-11 T 14-10-2018 IPR005116 Transport-associated OB, type 1 Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 SUPERFAMILY SSF50331 201 269 1.09E-20 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 29 91 3.9E-14 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 Gene3D G3DSA:2.40.50.100 200 270 1.7E-25 T 14-10-2018 Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 130 196 2.5E-20 T 14-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 201 269 7.8E-21 T 14-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 Thimo_0613 e8f0116f193f2d48e47041ba5ca5f194 270 Gene3D G3DSA:2.40.50.100 130 195 1.2E-23 T 14-10-2018 Thimo_3754 55c29f8acd9660a0eb38594906ef8c97 242 Pfam PF07996 Type IV secretion system proteins 26 219 1.1E-44 T 14-10-2018 IPR014158 Type IV secretion system, VirB5 Thimo_3754 55c29f8acd9660a0eb38594906ef8c97 242 Gene3D G3DSA:1.20.58.430 26 225 7.1E-29 T 14-10-2018 IPR023220 Type IV secretion system, VirB5-domain Thimo_3754 55c29f8acd9660a0eb38594906ef8c97 242 SUPERFAMILY SSF101082 26 218 4.84E-27 T 14-10-2018 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 283 298 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 Pfam PF00248 Aldo/keto reductase family 23 314 8.0E-39 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain Thimo_0481 0472a03c5e28669e0950ffd049415564 330 PRINTS PR00069 Aldo-keto reductase signature 211 240 2.7E-36 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 PRINTS PR00069 Aldo-keto reductase signature 174 191 2.7E-36 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 PRINTS PR00069 Aldo-keto reductase signature 250 274 2.7E-36 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 PRINTS PR00069 Aldo-keto reductase signature 52 76 2.7E-36 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 PIRSF PIRSF000097 5 326 1.1E-62 T 14-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 174 191 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 SUPERFAMILY SSF51430 11 317 6.42E-73 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Thimo_0481 0472a03c5e28669e0950ffd049415564 330 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 56 73 - T 14-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Thimo_0481 0472a03c5e28669e0950ffd049415564 330 Gene3D G3DSA:3.20.20.100 5 327 1.0E-89 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Thimo_3276 475eea170c6ac5b296244126ac5207a6 301 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 8 297 58.66 T 14-10-2018 IPR023009 Tyrosine recombinase XerC/XerD Thimo_3276 475eea170c6ac5b296244126ac5207a6 301 SUPERFAMILY SSF56349 12 290 2.0E-55 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Thimo_3276 475eea170c6ac5b296244126ac5207a6 301 Gene3D G3DSA:1.10.150.130 7 112 2.6E-25 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Thimo_3276 475eea170c6ac5b296244126ac5207a6 301 Gene3D G3DSA:1.10.443.10 114 291 7.4E-59 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Thimo_3276 475eea170c6ac5b296244126ac5207a6 301 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 12 299 4.6E-109 T 14-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 Thimo_3276 475eea170c6ac5b296244126ac5207a6 301 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 93 6.9E-24 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Thimo_3276 475eea170c6ac5b296244126ac5207a6 301 Pfam PF00589 Phage integrase family 115 283 2.7E-45 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Thimo_2529 ac6ac05a04bb9b57d1828d6458de6038 349 Gene3D G3DSA:3.40.190.10 26 311 2.6E-53 T 14-10-2018 Thimo_2529 ac6ac05a04bb9b57d1828d6458de6038 349 Gene3D G3DSA:3.40.190.10 111 284 2.6E-53 T 14-10-2018 Thimo_2529 ac6ac05a04bb9b57d1828d6458de6038 349 Pfam PF12849 PBP superfamily domain 19 310 2.8E-42 T 14-10-2018 IPR024370 PBP domain Thimo_2529 ac6ac05a04bb9b57d1828d6458de6038 349 SUPERFAMILY SSF53850 25 340 1.81E-70 T 14-10-2018 Thimo_2383 a145dfd82cd620393fdc47b89fda7545 343 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 338 147.548 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Thimo_2383 a145dfd82cd620393fdc47b89fda7545 343 SUPERFAMILY SSF53659 5 332 5.76E-108 T 14-10-2018 Thimo_2383 a145dfd82cd620393fdc47b89fda7545 343 Gene3D G3DSA:3.40.718.10 4 341 7.9E-132 T 14-10-2018 Thimo_2383 a145dfd82cd620393fdc47b89fda7545 343 Pfam PF02504 Fatty acid synthesis protein 6 324 4.3E-108 T 14-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 Thimo_2383 a145dfd82cd620393fdc47b89fda7545 343 PIRSF PIRSF002465 3 336 2.2E-130 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Thimo_2383 a145dfd82cd620393fdc47b89fda7545 343 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 331 1.3E-113 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Thimo_0712 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 Gene3D G3DSA:2.30.170.40 2 78 1.1E-31 T 14-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0712 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.747 T 14-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0712 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 SUPERFAMILY SSF143800 2 77 2.35E-30 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0712 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 1.2E-27 T 14-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0712 0fcc7fba7c8f8cf6c15c45a6c46f0e90 78 Pfam PF00830 Ribosomal L28 family 3 62 1.9E-26 T 14-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2113 1919d02cbdec3c8f194468f2b9146034 370 PIRSF PIRSF029120 1 324 2.4E-66 T 14-10-2018 IPR011226 ATP-grasp family Thimo_2113 1919d02cbdec3c8f194468f2b9146034 370 Pfam PF15632 ATP-grasp in the biosynthetic pathway with Ter operon 3 315 2.4E-100 T 14-10-2018 IPR011226 ATP-grasp family Thimo_2113 1919d02cbdec3c8f194468f2b9146034 370 SUPERFAMILY SSF56059 106 317 7.25E-27 T 14-10-2018 Thimo_2113 1919d02cbdec3c8f194468f2b9146034 370 SMART SM01209 113 290 0.004 T 14-10-2018 Thimo_2113 1919d02cbdec3c8f194468f2b9146034 370 Gene3D G3DSA:3.30.470.20 215 315 5.4E-12 T 14-10-2018 Thimo_2113 1919d02cbdec3c8f194468f2b9146034 370 Gene3D G3DSA:3.30.1490.20 114 185 2.5E-6 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 Gene3D G3DSA:3.40.50.1820 18 328 3.7E-100 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 25 327 1.2E-129 T 14-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 SUPERFAMILY SSF53474 21 314 3.44E-61 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 79 90 3.1E-14 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 53 61 3.1E-14 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 122 136 3.1E-14 T 14-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 76 91 3.5E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 135 3.5E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 136 149 3.5E-6 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 Pfam PF00561 alpha/beta hydrolase fold 54 313 1.6E-29 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1844 8d846793b7eed7d7dbcc1f659bc84315 332 PIRSF PIRSF006431 15 331 4.5E-138 T 14-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 Thimo_1074 d5c68cb8a211f25eb2452da61137f0fe 254 SUPERFAMILY SSF51556 3 247 1.5E-35 T 14-10-2018 IPR032466 Metal-dependent hydrolase Thimo_1074 d5c68cb8a211f25eb2452da61137f0fe 254 Gene3D G3DSA:3.20.20.140 1 251 1.0E-42 T 14-10-2018 Thimo_1074 d5c68cb8a211f25eb2452da61137f0fe 254 Pfam PF04909 Amidohydrolase 5 247 5.4E-18 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Thimo_3261 18158578436162d66d915198520a7174 264 SUPERFAMILY SSF53335 17 247 6.31E-41 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3261 18158578436162d66d915198520a7174 264 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 15 242 1.6E-73 T 14-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Thimo_3261 18158578436162d66d915198520a7174 264 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 15 248 35.635 T 14-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Thimo_3261 18158578436162d66d915198520a7174 264 Gene3D G3DSA:3.40.50.150 15 247 4.2E-63 T 14-10-2018 Thimo_3261 18158578436162d66d915198520a7174 264 Pfam PF08241 Methyltransferase domain 71 166 6.0E-21 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_3193 b1ee62db074026bb5a9d58cca98db050 115 Gene3D G3DSA:3.30.110.70 2 109 5.3E-29 T 14-10-2018 Thimo_3193 b1ee62db074026bb5a9d58cca98db050 115 SUPERFAMILY SSF117782 1 104 6.41E-33 T 14-10-2018 IPR035439 UPF0145 domain superfamily Thimo_3193 b1ee62db074026bb5a9d58cca98db050 115 Pfam PF01906 Putative heavy-metal-binding 1 102 8.4E-35 T 14-10-2018 IPR002765 Uncharacterised protein family UPF0145 Thimo_3193 b1ee62db074026bb5a9d58cca98db050 115 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 22.783 T 14-10-2018 IPR002765 Uncharacterised protein family UPF0145 Thimo_0581 9451f54517550c0b7443be37592a2f77 158 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 7.0E-48 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 Thimo_0581 9451f54517550c0b7443be37592a2f77 158 Hamap MF_00023 SsrA-binding protein [smpB]. 1 158 70.466 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 Thimo_0581 9451f54517550c0b7443be37592a2f77 158 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 8.1E-51 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 Thimo_0581 9451f54517550c0b7443be37592a2f77 158 Gene3D G3DSA:2.40.280.10 6 135 2.0E-47 T 14-10-2018 IPR023620 Small protein B Thimo_0581 9451f54517550c0b7443be37592a2f77 158 SUPERFAMILY SSF74982 8 138 2.22E-49 T 14-10-2018 IPR023620 Small protein B Thimo_0581 9451f54517550c0b7443be37592a2f77 158 Pfam PF01668 SmpB protein 14 156 5.3E-57 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 Thimo_0581 9451f54517550c0b7443be37592a2f77 158 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 14-10-2018 IPR020081 SsrA-binding protein, conserved site Thimo_3393 d9c82742f4888a17de479a1809be5202 67 SUPERFAMILY SSF55008 1 66 6.94E-20 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Thimo_3393 d9c82742f4888a17de479a1809be5202 67 Pfam PF00403 Heavy-metal-associated domain 6 62 3.3E-17 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Thimo_3393 d9c82742f4888a17de479a1809be5202 67 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Thimo_3393 d9c82742f4888a17de479a1809be5202 67 Gene3D G3DSA:3.30.70.100 4 67 1.0E-24 T 14-10-2018 Thimo_1261 6a1d355017e115687567e87e5564aec0 290 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 191 289 2.4E-29 T 14-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Thimo_1261 6a1d355017e115687567e87e5564aec0 290 SUPERFAMILY SSF54913 219 289 1.78E-17 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_1261 6a1d355017e115687567e87e5564aec0 290 Pfam PF08029 HisG, C-terminal domain 216 288 6.1E-23 T 14-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Thimo_1261 6a1d355017e115687567e87e5564aec0 290 Gene3D G3DSA:3.30.70.120 219 290 3.5E-18 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_1261 6a1d355017e115687567e87e5564aec0 290 SUPERFAMILY SSF53850 3 216 1.4E-55 T 14-10-2018 Thimo_1261 6a1d355017e115687567e87e5564aec0 290 Gene3D G3DSA:3.40.190.10 6 205 4.9E-53 T 14-10-2018 Thimo_1261 6a1d355017e115687567e87e5564aec0 290 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 4 189 2.7E-48 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Thimo_1261 6a1d355017e115687567e87e5564aec0 290 Gene3D G3DSA:3.40.190.10 89 183 4.9E-53 T 14-10-2018 Thimo_1261 6a1d355017e115687567e87e5564aec0 290 Pfam PF01634 ATP phosphoribosyltransferase 50 211 3.0E-38 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Thimo_1261 6a1d355017e115687567e87e5564aec0 290 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 3 290 27.188 T 14-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 Thimo_1689 cd05bce6f4b610eb8ce4260122c4a2b2 205 Gene3D G3DSA:3.40.1410.10 40 205 6.1E-35 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Thimo_1689 cd05bce6f4b610eb8ce4260122c4a2b2 205 SUPERFAMILY SSF64288 42 202 1.65E-30 T 14-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Thimo_1689 cd05bce6f4b610eb8ce4260122c4a2b2 205 Pfam PF01947 Protein of unknown function (DUF98) 50 201 7.4E-13 T 14-10-2018 IPR002800 Chorismate pyruvate-lyase Rv2949c-like Thimo_2045 20248e4b033bee1ebe106bcb91848f82 264 Pfam PF03649 Uncharacterised protein family (UPF0014) 9 251 5.7E-84 T 14-10-2018 IPR005226 UPF0014 family Thimo_2045 20248e4b033bee1ebe106bcb91848f82 264 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 9 257 4.4E-56 T 14-10-2018 IPR005226 UPF0014 family Thimo_2701 f6670d07f95674a6c51c4287549e6218 140 Pfam PF01844 HNH endonuclease 50 98 9.7E-12 T 14-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 Thimo_2701 f6670d07f95674a6c51c4287549e6218 140 SMART SM00507 38 93 1.8E-4 T 14-10-2018 IPR003615 HNH nuclease Thimo_0906 ea9f2c97a12f382830c3fa246f1330f1 1103 Gene3D G3DSA:3.40.50.300 668 853 3.8E-20 T 14-10-2018 Thimo_0906 ea9f2c97a12f382830c3fa246f1330f1 1103 SUPERFAMILY SSF52540 411 1097 2.77E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0906 ea9f2c97a12f382830c3fa246f1330f1 1103 Pfam PF13087 AAA domain 838 1072 4.0E-33 T 14-10-2018 Thimo_0906 ea9f2c97a12f382830c3fa246f1330f1 1103 Gene3D G3DSA:3.40.50.300 870 1101 9.0E-36 T 14-10-2018 Thimo_0906 ea9f2c97a12f382830c3fa246f1330f1 1103 Pfam PF13086 AAA domain 736 812 6.8E-15 T 14-10-2018 Thimo_0906 ea9f2c97a12f382830c3fa246f1330f1 1103 Pfam PF13086 AAA domain 413 495 2.9E-9 T 14-10-2018 Thimo_0277 e81d9af4347d577f86c415fa70650819 367 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 259 326 1.0E-12 T 14-10-2018 IPR001543 Surface presentation of antigen (SpoA) Thimo_0277 e81d9af4347d577f86c415fa70650819 367 Pfam PF02154 Flagellar motor switch protein FliM 40 236 2.1E-41 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Thimo_0277 e81d9af4347d577f86c415fa70650819 367 SUPERFAMILY SSF101801 255 327 4.19E-11 T 14-10-2018 IPR036429 SpoA-like superfamily Thimo_0277 e81d9af4347d577f86c415fa70650819 367 PIRSF PIRSF002888 3 332 1.9E-67 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Thimo_0277 e81d9af4347d577f86c415fa70650819 367 Gene3D G3DSA:3.40.1550.10 47 237 5.5E-44 T 14-10-2018 IPR028976 CheC-like superfamily Thimo_0277 e81d9af4347d577f86c415fa70650819 367 SUPERFAMILY SSF103039 53 236 4.45E-9 T 14-10-2018 IPR028976 CheC-like superfamily Thimo_0277 e81d9af4347d577f86c415fa70650819 367 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 5 325 4.2E-71 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Thimo_0277 e81d9af4347d577f86c415fa70650819 367 PRINTS PR00955 Flagellar motor switch protein FliM signature 116 135 7.3E-8 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Thimo_0277 e81d9af4347d577f86c415fa70650819 367 PRINTS PR00955 Flagellar motor switch protein FliM signature 218 236 7.3E-8 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Thimo_0277 e81d9af4347d577f86c415fa70650819 367 PRINTS PR00955 Flagellar motor switch protein FliM signature 4 17 7.3E-8 T 14-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Thimo_2848 2dcca1f20f049336dcdf47ee7887619a 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.597 T 14-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2848 2dcca1f20f049336dcdf47ee7887619a 179 SUPERFAMILY SSF55282 3 179 3.06E-77 T 14-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2848 2dcca1f20f049336dcdf47ee7887619a 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 14-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2848 2dcca1f20f049336dcdf47ee7887619a 179 PIRSF PIRSF002161 1 179 3.1E-64 T 14-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2848 2dcca1f20f049336dcdf47ee7887619a 179 Gene3D G3DSA:3.30.1440.10 1 179 7.6E-77 T 14-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2848 2dcca1f20f049336dcdf47ee7887619a 179 Pfam PF00281 Ribosomal protein L5 25 80 2.8E-27 T 14-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2848 2dcca1f20f049336dcdf47ee7887619a 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 3.3E-41 T 14-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2132 00edf383ea718bf02ce2a3cc10720735 90 Pfam PF00886 Ribosomal protein S16 8 68 1.1E-24 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2132 00edf383ea718bf02ce2a3cc10720735 90 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 25.152 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2132 00edf383ea718bf02ce2a3cc10720735 90 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 1.4E-31 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2132 00edf383ea718bf02ce2a3cc10720735 90 Gene3D G3DSA:3.30.1320.10 1 88 2.1E-31 T 14-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2132 00edf383ea718bf02ce2a3cc10720735 90 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 14-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2132 00edf383ea718bf02ce2a3cc10720735 90 SUPERFAMILY SSF54565 1 78 1.44E-29 T 14-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_3020 4b0246c2ebd6d666ecf3c33f3e89a72f 476 Gene3D G3DSA:1.20.1250.20 263 462 7.6E-7 T 14-10-2018 Thimo_3020 4b0246c2ebd6d666ecf3c33f3e89a72f 476 Gene3D G3DSA:1.20.1250.20 31 237 1.4E-7 T 14-10-2018 Thimo_3020 4b0246c2ebd6d666ecf3c33f3e89a72f 476 PIRSF PIRSF016565 20 473 5.1E-118 T 14-10-2018 IPR026036 PucC protein Thimo_3020 4b0246c2ebd6d666ecf3c33f3e89a72f 476 Pfam PF03209 PUCC protein 56 457 5.6E-128 T 14-10-2018 IPR004896 PucC-related Thimo_3020 4b0246c2ebd6d666ecf3c33f3e89a72f 476 SUPERFAMILY SSF103473 36 449 2.49E-26 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 Gene3D G3DSA:3.40.140.10 2 142 1.3E-44 T 14-10-2018 Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 SUPERFAMILY SSF53597 147 368 2.27E-59 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 SUPERFAMILY SSF53927 6 147 6.36E-47 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 101 1.9E-18 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 9 367 9.3E-121 T 14-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 148 370 2.1E-63 T 14-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 90 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 PIRSF PIRSF006769 2 373 1.3E-127 T 14-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 Gene3D G3DSA:3.40.430.10 143 374 5.6E-73 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Thimo_0344 40d58614b35e9f30fefe71e4d88d24f4 375 Pfam PF01872 RibD C-terminal domain 149 365 1.7E-50 T 14-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Thimo_2027 24d8329b71c97fc35c20e9cb46c81b45 256 Gene3D G3DSA:3.30.46.10 21 210 3.7E-54 T 14-10-2018 Thimo_2027 24d8329b71c97fc35c20e9cb46c81b45 256 Pfam PF13649 Methyltransferase domain 53 152 1.2E-18 T 14-10-2018 Thimo_2027 24d8329b71c97fc35c20e9cb46c81b45 256 Gene3D G3DSA:3.40.50.150 32 237 3.7E-54 T 14-10-2018 Thimo_2027 24d8329b71c97fc35c20e9cb46c81b45 256 SUPERFAMILY SSF53335 19 242 2.28E-42 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0448 a4152fbc6c1286c19540b10338cd3650 191 Gene3D G3DSA:1.10.1740.10 9 99 6.4E-14 T 14-10-2018 Thimo_0448 a4152fbc6c1286c19540b10338cd3650 191 SUPERFAMILY SSF88946 11 110 6.67E-18 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_0448 a4152fbc6c1286c19540b10338cd3650 191 SUPERFAMILY SSF88659 127 187 6.92E-12 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0448 a4152fbc6c1286c19540b10338cd3650 191 Pfam PF08281 Sigma-70, region 4 131 183 6.4E-13 T 14-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_0448 a4152fbc6c1286c19540b10338cd3650 191 Gene3D G3DSA:1.10.10.10 117 189 2.3E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0448 a4152fbc6c1286c19540b10338cd3650 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 184 1.5E-21 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Thimo_0448 a4152fbc6c1286c19540b10338cd3650 191 Pfam PF04542 Sigma-70 region 2 34 99 4.9E-11 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 Gene3D G3DSA:3.30.1150.10 170 273 5.7E-26 T 14-10-2018 Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 195 272 5.6E-25 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 196 272 2.7E-24 T 14-10-2018 IPR006260 TonB/TolA, C-terminal Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 SUPERFAMILY SSF74653 190 271 2.62E-25 T 14-10-2018 Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 55 76 1.6E-9 T 14-10-2018 Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 77 93 1.6E-9 T 14-10-2018 Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 112 137 1.6E-9 T 14-10-2018 Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 94 111 1.6E-9 T 14-10-2018 Thimo_3185 e4cef664a5f770b6c4a86fbe2d2d98fd 274 PRINTS PR01217 Proline rich extensin signature 4 20 1.6E-9 T 14-10-2018 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 Pfam PF07478 D-ala D-ala ligase C-terminus 109 301 4.7E-53 T 14-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 10 303 6.6E-99 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 PIRSF PIRSF039102 50 306 4.8E-79 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 PIRSF PIRSF039102 7 50 3.7E-8 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 Gene3D G3DSA:3.30.1490.20 117 181 3.5E-71 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 246 274 - T 14-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 SUPERFAMILY SSF52440 10 102 1.92E-28 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 SUPERFAMILY SSF56059 102 300 4.21E-56 T 14-10-2018 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 Gene3D G3DSA:3.30.470.20 91 300 3.5E-71 T 14-10-2018 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 Pfam PF01820 D-ala D-ala ligase N-terminus 10 92 1.1E-15 T 14-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 69 80 - T 14-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 9 304 34.597 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3108 1f65037cb8e7f22133228c6066e112c7 307 Gene3D G3DSA:3.40.50.20 1 90 2.6E-30 T 14-10-2018 Thimo_3711 da9293ab2548460efa3544fa2b5cabc4 333 Pfam PF07478 D-ala D-ala ligase C-terminus 134 321 7.4E-24 T 14-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Thimo_3711 da9293ab2548460efa3544fa2b5cabc4 333 Gene3D G3DSA:3.30.1490.20 122 189 3.4E-48 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_3711 da9293ab2548460efa3544fa2b5cabc4 333 Gene3D G3DSA:3.30.470.20 102 325 3.4E-48 T 14-10-2018 Thimo_3711 da9293ab2548460efa3544fa2b5cabc4 333 SUPERFAMILY SSF52440 33 106 8.34E-8 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_3711 da9293ab2548460efa3544fa2b5cabc4 333 SUPERFAMILY SSF56059 107 322 1.75E-32 T 14-10-2018 Thimo_3004 6a3306f69f2c73d5434da407dc25e0e1 507 SUPERFAMILY SSF53807 70 476 3.01E-60 T 14-10-2018 Thimo_3004 6a3306f69f2c73d5434da407dc25e0e1 507 TIGRFAM TIGR02015 BchY: chlorophyllide reductase subunit Y 64 484 3.0E-203 T 14-10-2018 IPR010245 Chlorophyllide reductase subunit Y GO:0015979|GO:0016021|GO:0016731|GO:0030494 KEGG: 00860+1.3.7.15|MetaCyc: PWY-5526 Thimo_3004 6a3306f69f2c73d5434da407dc25e0e1 507 PIRSF PIRSF000163 67 504 4.1E-133 T 14-10-2018 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3004 6a3306f69f2c73d5434da407dc25e0e1 507 Gene3D G3DSA:3.40.50.1980 69 208 3.4E-8 T 14-10-2018 Thimo_3004 6a3306f69f2c73d5434da407dc25e0e1 507 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 77 468 1.9E-43 T 14-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Thimo_3004 6a3306f69f2c73d5434da407dc25e0e1 507 Gene3D G3DSA:3.40.50.1980 328 479 1.9E-11 T 14-10-2018 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 Gene3D G3DSA:1.10.230.10 270 379 2.4E-147 T 14-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 ProSitePatterns PS00480 Citrate synthase signature. 305 317 - T 14-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 Gene3D G3DSA:2.20.28.60 3 52 2.4E-16 T 14-10-2018 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 298 318 2.8E-54 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 221 236 2.8E-54 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 382 396 2.8E-54 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 167 180 2.8E-54 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 243 271 2.8E-54 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 PRINTS PR00143 Citrate synthase signature 362 378 2.8E-54 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 PIRSF PIRSF001369 39 431 2.5E-164 T 14-10-2018 IPR024176 Citrate synthase, bacterial-type Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 SUPERFAMILY SSF48256 8 431 1.57E-162 T 14-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 Gene3D G3DSA:1.10.580.10 59 414 2.4E-147 T 14-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 425 3.4E-211 T 14-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 Thimo_0081 5c64133799c45b38b1c45437631a56d5 431 Pfam PF00285 Citrate synthase, C-terminal domain 48 414 1.2E-135 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_0117 afefabe81a5df62b395d8153d800c9d3 125 Gene3D G3DSA:3.30.420.130 1 104 3.7E-13 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_0117 afefabe81a5df62b395d8153d800c9d3 125 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 12 99 6.0E-6 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_0117 afefabe81a5df62b395d8153d800c9d3 125 SUPERFAMILY SSF53146 1 103 1.44E-18 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_2069 72c3b1ca4896f4ea3f56e2e4bd40602d 195 SUPERFAMILY SSF141523 31 188 3.92E-24 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_2069 72c3b1ca4896f4ea3f56e2e4bd40602d 195 Gene3D G3DSA:2.40.440.10 5 192 4.1E-25 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_2069 72c3b1ca4896f4ea3f56e2e4bd40602d 195 Pfam PF03734 L,D-transpeptidase catalytic domain 35 187 3.5E-17 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Thimo_0843 8de94435ae55fdf6c938565840ad8e7e 112 SUPERFAMILY SSF53146 1 111 2.09E-27 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_0843 8de94435ae55fdf6c938565840ad8e7e 112 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 9 98 1.7E-18 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_0843 8de94435ae55fdf6c938565840ad8e7e 112 Gene3D G3DSA:3.30.420.130 1 101 2.5E-23 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 Gene3D G3DSA:3.30.590.10 104 456 1.3E-145 T 14-10-2018 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 Gene3D G3DSA:3.10.20.70 2 103 1.8E-39 T 14-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 SMART SM01230 101 378 4.8E-145 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 SUPERFAMILY SSF54368 3 99 6.41E-35 T 14-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 Pfam PF00120 Glutamine synthetase, catalytic domain 101 465 1.9E-135 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 385 397 - T 14-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 ProSitePatterns PS00180 Glutamine synthetase signature 1. 49 67 - T 14-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 258 273 - T 14-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 467 9.5E-201 T 14-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 SUPERFAMILY SSF55931 101 467 4.81E-136 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Thimo_3682 e2c9e1e9f8ab3ff6ddc8bcfb803c2852 468 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 13 94 4.9E-30 T 14-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Thimo_0484 97fe6aeb1bbd56f220829f1782a8883e 524 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 26 518 1.2E-121 T 14-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Thimo_0484 97fe6aeb1bbd56f220829f1782a8883e 524 Gene3D G3DSA:3.40.50.880 288 421 8.6E-15 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0484 97fe6aeb1bbd56f220829f1782a8883e 524 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 26 272 6.7E-18 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0484 97fe6aeb1bbd56f220829f1782a8883e 524 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 524 185.732 T 14-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Thimo_0484 97fe6aeb1bbd56f220829f1782a8883e 524 SUPERFAMILY SSF52540 24 271 3.28E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0484 97fe6aeb1bbd56f220829f1782a8883e 524 SUPERFAMILY SSF52317 289 485 1.39E-32 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0484 97fe6aeb1bbd56f220829f1782a8883e 524 Gene3D G3DSA:3.40.50.300 21 275 1.0E-48 T 14-10-2018 Thimo_0484 97fe6aeb1bbd56f220829f1782a8883e 524 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 288 476 1.4E-52 T 14-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 Gene3D G3DSA:1.10.287.80 6 283 1.1E-106 T 14-10-2018 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 14-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.192 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 PRINTS PR00126 ATP synthase gamma subunit signature 74 93 4.6E-35 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 4.6E-35 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 PRINTS PR00126 ATP synthase gamma subunit signature 167 184 4.6E-35 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 4.6E-35 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 8.8E-109 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 Gene3D G3DSA:3.40.1380.10 61 206 1.1E-106 T 14-10-2018 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 SUPERFAMILY SSF52943 2 287 1.7E-95 T 14-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1170 8f756d16a4ddafccd708bdb1684a88cd 287 Pfam PF00231 ATP synthase 5 286 3.6E-97 T 14-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 Pfam PF01165 Ribosomal protein S21 3 56 1.1E-21 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 44 4.0E-9 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.6E-16 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.6E-16 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.6E-16 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.6E-16 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 Gene3D G3DSA:1.20.5.1150 16 54 3.6E-21 T 14-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.252 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0555 dc99406d8ea5fae1f7a3b931bc81cc6e 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 3.5E-24 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1282 4d6de181db8671b3323e9c591ca46df5 104 Pfam PF13488 Glycine zipper 30 71 7.3E-12 T 14-10-2018 IPR039567 Glycine zipper domain Thimo_1246 9079151f92a438eb923b985786bf5f81 311 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 4 302 1.5E-93 T 14-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Thimo_1246 9079151f92a438eb923b985786bf5f81 311 Gene3D G3DSA:3.10.25.10 209 309 1.2E-33 T 14-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Thimo_1246 9079151f92a438eb923b985786bf5f81 311 Pfam PF00551 Formyl transferase 5 182 4.6E-45 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Thimo_1246 9079151f92a438eb923b985786bf5f81 311 SUPERFAMILY SSF53328 5 209 2.09E-69 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Thimo_1246 9079151f92a438eb923b985786bf5f81 311 Gene3D G3DSA:3.40.50.170 1 208 3.1E-81 T 14-10-2018 Thimo_1246 9079151f92a438eb923b985786bf5f81 311 Pfam PF02911 Formyl transferase, C-terminal domain 206 302 3.8E-29 T 14-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Thimo_1246 9079151f92a438eb923b985786bf5f81 311 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 4 306 37.85 T 14-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Thimo_1246 9079151f92a438eb923b985786bf5f81 311 SUPERFAMILY SSF50486 207 305 1.57E-33 T 14-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 Thimo_2467 e000e4b984c967cfd85843af5b19a212 501 Pfam PF04972 BON domain 72 136 1.1E-10 T 14-10-2018 IPR007055 BON domain Thimo_2467 e000e4b984c967cfd85843af5b19a212 501 SUPERFAMILY SSF50182 248 314 1.47E-15 T 14-10-2018 IPR010920 LSM domain superfamily Thimo_2467 e000e4b984c967cfd85843af5b19a212 501 SUPERFAMILY SSF82689 318 416 6.28E-23 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Thimo_2467 e000e4b984c967cfd85843af5b19a212 501 Gene3D G3DSA:2.30.30.60 264 313 2.3E-12 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Thimo_2467 e000e4b984c967cfd85843af5b19a212 501 Gene3D G3DSA:3.30.70.100 315 408 1.0E-20 T 14-10-2018 Thimo_2467 e000e4b984c967cfd85843af5b19a212 501 Pfam PF00924 Mechanosensitive ion channel 210 405 1.1E-42 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 SUPERFAMILY SSF51206 5 126 8.25E-25 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 SUPERFAMILY SSF54631 144 285 2.14E-21 T 14-10-2018 Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 Gene3D G3DSA:3.10.580.10 146 291 3.9E-24 T 14-10-2018 Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 SMART SM00100 17 134 1.5E-4 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF00571 CBS domain 151 222 6.3E-5 T 14-10-2018 IPR000644 CBS domain Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF00571 CBS domain 241 284 3.2E-6 T 14-10-2018 IPR000644 CBS domain Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 Gene3D G3DSA:2.60.120.10 1 145 5.6E-20 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF03445 Putative nucleotidyltransferase DUF294 312 448 1.5E-45 T 14-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 SMART SM00116 158 222 2.6 T 14-10-2018 IPR000644 CBS domain Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 SMART SM00116 239 286 1.6E-4 T 14-10-2018 IPR000644 CBS domain Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 484 628 3.9E-43 T 14-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding Thimo_3663 1fb9480afbc52b61d8078f5e79cfc432 633 Pfam PF00027 Cyclic nucleotide-binding domain 37 118 1.7E-12 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_0783 de15d77c1b5d409e8d829df3d7a71673 436 Pfam PF14065 Protein of unknown function (DUF4255) 10 212 5.4E-51 T 14-10-2018 IPR025351 Protein of unknown function DUF4255 Thimo_3621 88833221984579ee24a5c08b9034e4b5 225 SUPERFAMILY SSF52540 1 221 1.27E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3621 88833221984579ee24a5c08b9034e4b5 225 Gene3D G3DSA:3.40.50.300 1 224 8.5E-59 T 14-10-2018 Thimo_3621 88833221984579ee24a5c08b9034e4b5 225 SMART SM00382 27 218 1.4E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3621 88833221984579ee24a5c08b9034e4b5 225 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 7.7E-82 T 14-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 Thimo_3621 88833221984579ee24a5c08b9034e4b5 225 Pfam PF00005 ABC transporter 18 165 1.0E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 SMART SM00382 25 211 5.3E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 SUPERFAMILY SSF52540 15 224 1.09E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 6 358 2.0E-134 T 14-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 Gene3D G3DSA:3.40.50.300 8 237 6.7E-62 T 14-10-2018 Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 Gene3D G3DSA:2.40.50.100 278 356 1.4E-14 T 14-10-2018 Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 SUPERFAMILY SSF50331 239 358 2.43E-23 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 Gene3D G3DSA:2.40.50.140 238 358 1.4E-14 T 14-10-2018 Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 Pfam PF00005 ABC transporter 19 161 1.3E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0616 1e1ad77858775a972f7176afa856ec66 360 Pfam PF03459 TOBE domain 292 358 2.0E-14 T 14-10-2018 IPR005116 Transport-associated OB, type 1 Thimo_1895 8178c657482cc1798ccc070e2a3834c6 158 SUPERFAMILY SSF141523 21 157 3.79E-23 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_1895 8178c657482cc1798ccc070e2a3834c6 158 Pfam PF03734 L,D-transpeptidase catalytic domain 21 156 1.3E-17 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Thimo_1895 8178c657482cc1798ccc070e2a3834c6 158 Gene3D G3DSA:2.40.440.10 6 158 4.7E-19 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 Gene3D G3DSA:3.30.450.40 1 166 1.0E-47 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 619 637 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 SMART SM00065 17 164 1.6E-28 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 SUPERFAMILY SSF51621 425 713 2.46E-98 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 Gene3D G3DSA:3.20.20.60 407 745 1.2E-104 T 14-10-2018 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 Gene3D G3DSA:1.10.274.10 196 320 4.2E-57 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 SUPERFAMILY SSF55781 2 160 1.37E-32 T 14-10-2018 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 Gene3D G3DSA:3.50.30.10 179 406 4.2E-57 T 14-10-2018 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 SUPERFAMILY SSF52009 299 418 1.26E-25 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 Pfam PF01590 GAF domain 17 154 1.9E-18 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 619 634 1.4E-22 T 14-10-2018 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 672 684 1.4E-22 T 14-10-2018 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 466 485 1.4E-22 T 14-10-2018 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 636 651 1.4E-22 T 14-10-2018 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 Pfam PF00391 PEP-utilising enzyme, mobile domain 327 398 1.0E-15 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 177 730 3.7E-130 T 14-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 Pfam PF05524 PEP-utilising enzyme, N-terminal 178 300 9.8E-24 T 14-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 426 711 6.1E-96 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Thimo_1463 44e8c894e5f7744b32ad51a68e107f3e 754 SUPERFAMILY SSF47831 205 317 2.35E-26 T 14-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Thimo_2196 e8652ddb334256e286a72bea852351fe 156 Pfam PF13673 Acetyltransferase (GNAT) domain 35 124 6.9E-13 T 14-10-2018 IPR000182 GNAT domain Thimo_2196 e8652ddb334256e286a72bea852351fe 156 Gene3D G3DSA:3.40.630.30 3 155 9.1E-40 T 14-10-2018 Thimo_2196 e8652ddb334256e286a72bea852351fe 156 SUPERFAMILY SSF55729 16 151 4.39E-24 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_1125 8bf67dec3eff876d4582a872a9e01c52 101 Gene3D G3DSA:2.102.10.10 2 101 5.2E-34 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Thimo_1125 8bf67dec3eff876d4582a872a9e01c52 101 Pfam PF00355 Rieske [2Fe-2S] domain 4 85 5.4E-19 T 14-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Thimo_1125 8bf67dec3eff876d4582a872a9e01c52 101 SUPERFAMILY SSF50022 2 100 1.83E-29 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Thimo_3511 0976ba0463ea5707f01f57c49f24903a 178 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_3511 0976ba0463ea5707f01f57c49f24903a 178 Gene3D G3DSA:3.30.70.560 1 160 1.3E-51 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_3511 0976ba0463ea5707f01f57c49f24903a 178 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 3.6E-37 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_3511 0976ba0463ea5707f01f57c49f24903a 178 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 2.9E-40 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_3511 0976ba0463ea5707f01f57c49f24903a 178 SUPERFAMILY SSF55083 3 152 3.14E-49 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_0648 ad36e85930c7200d95d57462e6ac11d9 392 Pfam PF00437 Type II/IV secretion system protein 54 283 4.1E-41 T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_0648 ad36e85930c7200d95d57462e6ac11d9 392 SUPERFAMILY SSF52540 12 348 1.1E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0648 ad36e85930c7200d95d57462e6ac11d9 392 SMART SM00382 134 286 0.0079 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0648 ad36e85930c7200d95d57462e6ac11d9 392 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 11 353 5.9E-117 T 14-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 Thimo_0648 ad36e85930c7200d95d57462e6ac11d9 392 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 205 219 - T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_0648 ad36e85930c7200d95d57462e6ac11d9 392 Gene3D G3DSA:3.40.50.300 113 369 3.3E-87 T 14-10-2018 Thimo_0648 ad36e85930c7200d95d57462e6ac11d9 392 Gene3D G3DSA:3.30.450.90 3 111 4.6E-25 T 14-10-2018 Thimo_3211 272bf7c7b5ec73d3e5a82ab0588b47d3 96 Gene3D G3DSA:3.30.460.10 2 96 6.3E-24 T 14-10-2018 Thimo_3211 272bf7c7b5ec73d3e5a82ab0588b47d3 96 Pfam PF01909 Nucleotidyltransferase domain 13 88 1.2E-14 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Thimo_3211 272bf7c7b5ec73d3e5a82ab0588b47d3 96 SUPERFAMILY SSF81301 3 96 2.62E-23 T 14-10-2018 Thimo_3636 46a90cf565a779aa48317f920dfafb95 270 SMART SM00014 119 239 5.4E-8 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Thimo_3636 46a90cf565a779aa48317f920dfafb95 270 SUPERFAMILY SSF48317 40 247 6.28E-21 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Thimo_3636 46a90cf565a779aa48317f920dfafb95 270 Pfam PF01569 PAP2 superfamily 122 243 5.5E-18 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Thimo_3636 46a90cf565a779aa48317f920dfafb95 270 Gene3D G3DSA:1.20.144.10 39 259 1.1E-14 T 14-10-2018 Thimo_1172 079f617ba4e81801671faec086fa257e 141 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 84 7.9E-28 T 14-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1172 079f617ba4e81801671faec086fa257e 141 SUPERFAMILY SSF46604 88 137 1.8E-13 T 14-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1172 079f617ba4e81801671faec086fa257e 141 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 20.14 T 14-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1172 079f617ba4e81801671faec086fa257e 141 Gene3D G3DSA:2.60.15.10 3 90 6.0E-29 T 14-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1172 079f617ba4e81801671faec086fa257e 141 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 133 1.7E-9 T 14-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Thimo_1172 079f617ba4e81801671faec086fa257e 141 Gene3D G3DSA:1.20.5.440 91 133 8.7E-13 T 14-10-2018 Thimo_1172 079f617ba4e81801671faec086fa257e 141 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 9.2E-41 T 14-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1172 079f617ba4e81801671faec086fa257e 141 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 83 2.0E-23 T 14-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1172 079f617ba4e81801671faec086fa257e 141 SUPERFAMILY SSF51344 3 86 3.66E-24 T 14-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_0213 d03a17af8a8696451b553956df3ebd08 219 Pfam PF00677 Lumazine binding domain 100 184 2.0E-25 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0213 d03a17af8a8696451b553956df3ebd08 219 Pfam PF00677 Lumazine binding domain 3 87 1.1E-20 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0213 d03a17af8a8696451b553956df3ebd08 219 SUPERFAMILY SSF63380 1 88 8.33E-25 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Thimo_0213 d03a17af8a8696451b553956df3ebd08 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 198 1.8E-60 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0213 d03a17af8a8696451b553956df3ebd08 219 PIRSF PIRSF000498 1 212 1.9E-72 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0213 d03a17af8a8696451b553956df3ebd08 219 Gene3D G3DSA:2.40.30.20 102 202 1.3E-35 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_0213 d03a17af8a8696451b553956df3ebd08 219 SUPERFAMILY SSF63380 94 194 1.11E-31 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Thimo_0213 d03a17af8a8696451b553956df3ebd08 219 Gene3D G3DSA:2.40.30.20 1 89 4.6E-27 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1433 473dee168b6049a89420f4a72f6f6956 384 SUPERFAMILY SSF111369 51 223 1.96E-14 T 14-10-2018 Thimo_1433 473dee168b6049a89420f4a72f6f6956 384 Gene3D G3DSA:1.10.287.470 93 184 3.2E-61 T 14-10-2018 Thimo_1433 473dee168b6049a89420f4a72f6f6956 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 374 1.1E-43 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1433 473dee168b6049a89420f4a72f6f6956 384 Gene3D G3DSA:2.40.420.20 307 363 3.2E-61 T 14-10-2018 Thimo_1433 473dee168b6049a89420f4a72f6f6956 384 Gene3D G3DSA:2.40.30.170 51 306 3.2E-61 T 14-10-2018 Thimo_1433 473dee168b6049a89420f4a72f6f6956 384 Pfam PF00529 HlyD membrane-fusion protein of T1SS 27 64 9.8E-7 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1433 473dee168b6049a89420f4a72f6f6956 384 Gene3D G3DSA:2.40.50.100 59 224 3.2E-61 T 14-10-2018 Thimo_1433 473dee168b6049a89420f4a72f6f6956 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 282 4.2E-10 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 SUPERFAMILY SSF53613 230 497 1.05E-69 T 14-10-2018 IPR029056 Ribokinase-like Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 PIRSF PIRSF017184 13 502 2.2E-130 T 14-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 ProSitePatterns PS01049 YjeF C-terminal domain signature 1. 322 332 - T 14-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 232 502 23.072 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 Pfam PF01256 Carbohydrate kinase 255 492 3.1E-58 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 17 217 24.35 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 SUPERFAMILY SSF64153 15 254 3.53E-60 T 14-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 Gene3D G3DSA:3.40.50.10260 12 223 6.1E-60 T 14-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 Gene3D G3DSA:3.40.1190.20 227 500 2.6E-81 T 14-10-2018 IPR029056 Ribokinase-like Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 24 217 1.1E-41 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 235 494 8.6E-68 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Thimo_1694 d2acde23c3457bd84afed1985e0dfd40 503 Pfam PF03853 YjeF-related protein N-terminus 38 196 1.9E-43 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Thimo_3759 632a0269bae95fbd95e10f27b074a030 270 Pfam PF03524 Conjugal transfer protein 43 246 4.5E-58 T 14-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX Thimo_3759 632a0269bae95fbd95e10f27b074a030 270 Gene3D G3DSA:2.60.40.2500 144 270 1.3E-31 T 14-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily Thimo_2103 1756f7dfe30da4a99ccdf5ea9bab81b5 327 Gene3D G3DSA:3.40.50.300 13 251 4.5E-64 T 14-10-2018 Thimo_2103 1756f7dfe30da4a99ccdf5ea9bab81b5 327 SUPERFAMILY SSF52540 17 245 2.72E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2103 1756f7dfe30da4a99ccdf5ea9bab81b5 327 SMART SM00382 44 238 3.3E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2103 1756f7dfe30da4a99ccdf5ea9bab81b5 327 Pfam PF00005 ABC transporter 35 179 8.0E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2590 0b8f869f1c447b32ab718751702c6eee 299 Pfam PF13557 Putative MetA-pathway of phenol degradation 64 295 2.5E-65 T 14-10-2018 IPR025737 MetA-pathway of phenol degradation, putative Thimo_0654 80a528527f5150f0d4b811bffced845a 298 SUPERFAMILY SSF53955 168 293 5.94E-45 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_0654 80a528527f5150f0d4b811bffced845a 298 SMART SM00671 63 98 0.97 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0654 80a528527f5150f0d4b811bffced845a 298 SMART SM00671 99 134 1.3E-6 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0654 80a528527f5150f0d4b811bffced845a 298 Pfam PF01464 Transglycosylase SLT domain 182 277 1.3E-25 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Thimo_0654 80a528527f5150f0d4b811bffced845a 298 Gene3D G3DSA:1.10.530.10 159 297 3.5E-42 T 14-10-2018 Thimo_0654 80a528527f5150f0d4b811bffced845a 298 Gene3D G3DSA:1.25.40.10 51 153 6.2E-19 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0654 80a528527f5150f0d4b811bffced845a 298 Pfam PF08238 Sel1 repeat 70 98 0.033 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0654 80a528527f5150f0d4b811bffced845a 298 Pfam PF08238 Sel1 repeat 99 134 6.9E-6 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0654 80a528527f5150f0d4b811bffced845a 298 SUPERFAMILY SSF81901 53 140 2.22E-15 T 14-10-2018 Thimo_0654 80a528527f5150f0d4b811bffced845a 298 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 195 223 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Thimo_3050 404d95ed25c9185aafb233a427896f3c 261 Pfam PF01875 Memo-like protein 6 258 1.6E-53 T 14-10-2018 IPR002737 MEMO1 family Reactome: R-HSA-6785631 Thimo_3050 404d95ed25c9185aafb233a427896f3c 261 Hamap MF_00055 MEMO1 family protein . 3 261 48.176 T 14-10-2018 IPR002737 MEMO1 family Reactome: R-HSA-6785631 Thimo_3050 404d95ed25c9185aafb233a427896f3c 261 Gene3D G3DSA:3.40.830.10 2 261 8.0E-67 T 14-10-2018 Thimo_3050 404d95ed25c9185aafb233a427896f3c 261 TIGRFAM TIGR04336 AmmeMemoSam_B: AmmeMemoRadiSam system protein B 5 260 8.8E-82 T 14-10-2018 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 Gene3D G3DSA:3.90.930.12 1 83 3.3E-26 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 Gene3D G3DSA:3.90.930.12 84 178 1.3E-39 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 155 163 - T 14-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 36.417 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 1.3E-72 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 PRINTS PR00059 Ribosomal protein L6 signature 100 116 2.7E-32 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 PRINTS PR00059 Ribosomal protein L6 signature 142 163 2.7E-32 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 PRINTS PR00059 Ribosomal protein L6 signature 72 97 2.7E-32 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 SUPERFAMILY SSF56053 1 83 2.22E-21 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 Pfam PF00347 Ribosomal protein L6 11 79 4.5E-14 T 14-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 Pfam PF00347 Ribosomal protein L6 91 165 7.6E-19 T 14-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 SUPERFAMILY SSF56053 84 178 7.92E-36 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2845 5ce3947d1a29c7b5c0e3be9064fab43f 178 PIRSF PIRSF002162 1 178 3.8E-42 T 14-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2599 1bcacaffa309cccc3ad874317d3844a1 211 TIGRFAM TIGR00172 maf: septum formation protein Maf 18 199 3.3E-46 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Thimo_2599 1bcacaffa309cccc3ad874317d3844a1 211 Pfam PF02545 Maf-like protein 18 200 7.9E-53 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Thimo_2599 1bcacaffa309cccc3ad874317d3844a1 211 PIRSF PIRSF006305 12 209 2.8E-46 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Thimo_2599 1bcacaffa309cccc3ad874317d3844a1 211 Hamap MF_00528 Septum formation protein Maf [maf]. 18 206 31.367 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Thimo_2599 1bcacaffa309cccc3ad874317d3844a1 211 SUPERFAMILY SSF52972 18 199 9.81E-57 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_2599 1bcacaffa309cccc3ad874317d3844a1 211 Gene3D G3DSA:3.90.950.10 17 205 4.8E-62 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_2080 3177ce113d19bacb334636cb77f9c6fe 84 SUPERFAMILY SSF81301 19 72 7.85E-8 T 14-10-2018 Thimo_2080 3177ce113d19bacb334636cb77f9c6fe 84 Gene3D G3DSA:3.30.460.10 5 83 7.7E-10 T 14-10-2018 Thimo_2080 3177ce113d19bacb334636cb77f9c6fe 84 Pfam PF01909 Nucleotidyltransferase domain 21 69 2.2E-4 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Thimo_1458 60de4967eff9202ac844a7e5931a5568 402 SUPERFAMILY SSF53756 13 386 2.54E-74 T 14-10-2018 Thimo_1458 60de4967eff9202ac844a7e5931a5568 402 Gene3D G3DSA:3.40.50.2000 205 366 3.9E-38 T 14-10-2018 Thimo_1458 60de4967eff9202ac844a7e5931a5568 402 Pfam PF13692 Glycosyl transferases group 1 215 349 6.4E-27 T 14-10-2018 Thimo_1458 60de4967eff9202ac844a7e5931a5568 402 Gene3D G3DSA:3.40.50.2000 8 204 4.5E-27 T 14-10-2018 Thimo_1458 60de4967eff9202ac844a7e5931a5568 402 Pfam PF13439 Glycosyltransferase Family 4 23 192 2.8E-25 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1745 ea8f4b50ed34267e7e2e222569fdbb88 388 Gene3D G3DSA:2.120.10.30 34 386 1.7E-118 T 14-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Thimo_1745 ea8f4b50ed34267e7e2e222569fdbb88 388 Pfam PF07995 Glucose / Sorbosone dehydrogenase 48 382 3.5E-128 T 14-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase Thimo_1745 ea8f4b50ed34267e7e2e222569fdbb88 388 SUPERFAMILY SSF50952 32 386 9.81E-51 T 14-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 Thimo_3160 c59eb1111abb355f31f9c1d0edac649c 208 SUPERFAMILY SSF53254 5 192 2.36E-51 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_3160 c59eb1111abb355f31f9c1d0edac649c 208 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 9 18 - T 14-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 Thimo_3160 c59eb1111abb355f31f9c1d0edac649c 208 Gene3D G3DSA:3.40.50.1240 4 193 3.2E-49 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_3160 c59eb1111abb355f31f9c1d0edac649c 208 PIRSF PIRSF000709 4 164 5.0E-6 T 14-10-2018 Thimo_3160 c59eb1111abb355f31f9c1d0edac649c 208 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 186 4.1E-49 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_3160 c59eb1111abb355f31f9c1d0edac649c 208 SMART SM00855 6 161 6.8E-24 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 SUPERFAMILY SSF56014 119 342 7.59E-33 T 14-10-2018 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 SUPERFAMILY SSF54862 165 247 7.22E-8 T 14-10-2018 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 Gene3D G3DSA:3.30.70.20 189 249 1.2E-89 T 14-10-2018 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 TIGRFAM TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit 22 356 2.4E-168 T 14-10-2018 IPR011808 Sulphite reductase, dissimilatory-type beta subunit GO:0006790|GO:0009055|GO:0018551|GO:0051539 KEGG: 00633+1.8.99.5|KEGG: 00920+1.8.99.5|MetaCyc: PWY-5306|MetaCyc: PWY-5360 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 49 110 3.6E-7 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 234 245 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 Gene3D G3DSA:3.30.413.10 123 342 1.2E-89 T 14-10-2018 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 SUPERFAMILY SSF55124 7 124 5.4E-42 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 Gene3D G3DSA:3.30.70.3340 2 122 1.0E-43 T 14-10-2018 Thimo_0144 a83622ac8db67c4c3159648b88d89a2d 356 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 335 5.8E-25 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Thimo_3203 821c49266b86e6a2fa03a56992e97c81 670 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 242 266 4.3E-7 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3203 821c49266b86e6a2fa03a56992e97c81 670 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 393 419 4.3E-7 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3203 821c49266b86e6a2fa03a56992e97c81 670 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 173 197 4.3E-7 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3203 821c49266b86e6a2fa03a56992e97c81 670 Pfam PF00361 Proton-conducting membrane transporter 136 421 1.7E-60 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0017 b32882176c89a14f5926a2b625665bea 423 Pfam PF13439 Glycosyltransferase Family 4 27 202 4.4E-16 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_0017 b32882176c89a14f5926a2b625665bea 423 SUPERFAMILY SSF53756 27 412 3.14E-76 T 14-10-2018 Thimo_0017 b32882176c89a14f5926a2b625665bea 423 Pfam PF00534 Glycosyl transferases group 1 227 387 1.4E-35 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_0017 b32882176c89a14f5926a2b625665bea 423 Gene3D G3DSA:3.40.50.2000 215 391 4.6E-46 T 14-10-2018 Thimo_3119 08be8caad6839d7cefadc109ea8df355 310 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 5 308 5.2E-104 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Thimo_3119 08be8caad6839d7cefadc109ea8df355 310 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 6 309 37.571 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Thimo_3119 08be8caad6839d7cefadc109ea8df355 310 PIRSF PIRSF004486 1 310 1.1E-97 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Thimo_3119 08be8caad6839d7cefadc109ea8df355 310 Pfam PF01795 MraW methylase family 6 308 6.9E-105 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Thimo_3119 08be8caad6839d7cefadc109ea8df355 310 Gene3D G3DSA:3.40.50.150 9 308 4.0E-101 T 14-10-2018 Thimo_3119 08be8caad6839d7cefadc109ea8df355 310 SUPERFAMILY SSF53335 5 309 7.19E-43 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3119 08be8caad6839d7cefadc109ea8df355 310 SUPERFAMILY SSF81799 115 214 9.02E-33 T 14-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Thimo_3119 08be8caad6839d7cefadc109ea8df355 310 Gene3D G3DSA:1.10.150.170 113 215 4.0E-101 T 14-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Thimo_2437 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 SUPERFAMILY SSF118196 2 230 1.31E-78 T 14-10-2018 IPR036413 YaeB-like superfamily Thimo_2437 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 Gene3D G3DSA:2.40.30.70 1 141 1.2E-45 T 14-10-2018 IPR036414 YaeB, N-terminal domain superfamily Thimo_2437 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 Pfam PF01980 Uncharacterised protein family UPF0066 20 143 1.2E-41 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain Thimo_2437 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 4 149 1.0E-42 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain Thimo_2437 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 14-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site Thimo_2437 ee01ab0d2c91e3eba12bd6aa9c6cab78 239 Gene3D G3DSA:3.30.2310.10 142 231 4.6E-15 T 14-10-2018 Thimo_2574 17e51157d8745fcf946035ef6a874e0e 279 SUPERFAMILY SSF143422 1 131 3.01E-29 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2574 17e51157d8745fcf946035ef6a874e0e 279 SMART SM01321 9 125 5.3E-46 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_2574 17e51157d8745fcf946035ef6a874e0e 279 Pfam PF01797 Transposase IS200 like 13 122 1.7E-15 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_2574 17e51157d8745fcf946035ef6a874e0e 279 Gene3D G3DSA:3.30.70.1290 1 159 1.6E-43 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 21 243 2.6E-74 T 14-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 8 246 59.411 T 14-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 SUPERFAMILY SSF88946 18 93 4.45E-22 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 SUPERFAMILY SSF88659 173 246 3.18E-19 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 Pfam PF04542 Sigma-70 region 2 21 93 3.5E-16 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 PIRSF PIRSF000770 5 251 3.3E-38 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 Gene3D G3DSA:1.20.140.160 92 246 1.5E-38 T 14-10-2018 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 SUPERFAMILY SSF88659 95 157 2.32E-10 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 PRINTS PR00046 Major sigma-70 factor signature 228 239 1.9E-9 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 PRINTS PR00046 Major sigma-70 factor signature 196 208 1.9E-9 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 PRINTS PR00046 Major sigma-70 factor signature 213 228 1.9E-9 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 PRINTS PR00046 Major sigma-70 factor signature 48 61 1.9E-9 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 Gene3D G3DSA:1.10.1740.10 7 90 2.6E-26 T 14-10-2018 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 243 8.8E-32 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Thimo_0287 a41f529ad0b3d3143df430662004fc67 251 Pfam PF04545 Sigma-70, region 4 192 241 2.1E-17 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Thimo_0547 f91f40a0f9f378fa8f086cdee6d1fc93 90 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 60 6.8E-15 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_0547 f91f40a0f9f378fa8f086cdee6d1fc93 90 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 50 7.0E-11 T 14-10-2018 Thimo_0547 f91f40a0f9f378fa8f086cdee6d1fc93 90 Gene3D G3DSA:3.40.1620.10 1 40 6.5E-7 T 14-10-2018 Thimo_0547 f91f40a0f9f378fa8f086cdee6d1fc93 90 SUPERFAMILY SSF143120 4 47 4.71E-10 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_0414 0724c4b2f5372a7cbc6531f24a58e3b5 66 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 36 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Thimo_0414 0724c4b2f5372a7cbc6531f24a58e3b5 66 Gene3D G3DSA:3.30.70.100 1 66 3.6E-21 T 14-10-2018 Thimo_0414 0724c4b2f5372a7cbc6531f24a58e3b5 66 Pfam PF00403 Heavy-metal-associated domain 4 61 7.3E-16 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Thimo_0414 0724c4b2f5372a7cbc6531f24a58e3b5 66 SUPERFAMILY SSF55008 2 64 3.14E-17 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Thimo_2187 caeb305e084aaab9eaf349498f6c408d 275 Pfam PF13525 Outer membrane lipoprotein 33 239 8.2E-69 T 14-10-2018 IPR039565 Outer membrane lipoprotein BamD-like Thimo_2187 caeb305e084aaab9eaf349498f6c408d 275 Gene3D G3DSA:1.25.40.10 34 253 1.3E-57 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2187 caeb305e084aaab9eaf349498f6c408d 275 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 3 245 38.177 T 14-10-2018 IPR017689 Outer membrane protein assembly factor BamD Thimo_2187 caeb305e084aaab9eaf349498f6c408d 275 SUPERFAMILY SSF48452 28 119 5.38E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2187 caeb305e084aaab9eaf349498f6c408d 275 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 244 1.3E-86 T 14-10-2018 IPR017689 Outer membrane protein assembly factor BamD Thimo_2319 7ea8815003ffedb2208b5c6b3567c55e 146 SUPERFAMILY SSF102400 4 143 2.88E-43 T 14-10-2018 IPR036768 DNA polymerase III subunit chi superfamily Thimo_2319 7ea8815003ffedb2208b5c6b3567c55e 146 Gene3D G3DSA:3.40.50.10110 2 143 9.5E-46 T 14-10-2018 IPR036768 DNA polymerase III subunit chi superfamily Thimo_2319 7ea8815003ffedb2208b5c6b3567c55e 146 Pfam PF04364 DNA polymerase III chi subunit, HolC 4 138 3.1E-39 T 14-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 Thimo_2285 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Thimo_2285 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 Gene3D G3DSA:3.40.50.720 5 246 6.6E-59 T 14-10-2018 Thimo_2285 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 SUPERFAMILY SSF51735 14 246 4.88E-54 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_2285 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 Pfam PF00106 short chain dehydrogenase 18 208 2.1E-34 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2285 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 4.8E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2285 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 4.8E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2285 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 4.8E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_2285 3310bb5d5ca1ebe9155c98a7fbfeb1c6 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 4.8E-14 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3617 9916e165acf9081642d007508f3a7624 147 SUPERFAMILY SSF49764 25 146 9.68E-31 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_3617 9916e165acf9081642d007508f3a7624 147 Pfam PF00011 Hsp20/alpha crystallin family 53 146 1.9E-20 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Thimo_3617 9916e165acf9081642d007508f3a7624 147 Gene3D G3DSA:2.60.40.790 1 147 5.0E-27 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 Gene3D G3DSA:1.10.8.60 364 439 2.3E-18 T 14-10-2018 Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 SUPERFAMILY SSF46689 406 518 4.93E-5 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 SUPERFAMILY SSF55781 5 166 9.16E-9 T 14-10-2018 Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 Pfam PF00158 Sigma-54 interaction domain 193 359 9.8E-67 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 SMART SM00382 213 355 9.7E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 Gene3D G3DSA:1.10.10.60 454 522 3.1E-9 T 14-10-2018 Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 SUPERFAMILY SSF52540 192 428 1.5E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 406 415 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 279 294 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 SMART SM00065 20 167 0.008 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 Gene3D G3DSA:3.30.450.40 5 184 4.3E-9 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 Gene3D G3DSA:3.40.50.300 185 363 1.5E-62 T 14-10-2018 Thimo_0377 fcf1e03ea8b61508b6da5dd74db9adc0 527 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 217 230 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.30.470.20 665 935 3.6E-120 T 14-10-2018 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.602 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1052 0.0 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Pfam PF02142 MGS-like domain 956 1041 1.3E-18 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF56059 128 401 2.12E-107 T 14-10-2018 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 7.8E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 7.8E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 7.8E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 7.8E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 7.8E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 7.8E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 7.8E-65 T 14-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF52335 935 1067 1.7E-36 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 SMART SM01096 424 547 7.2E-65 T 14-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF52440 557 675 1.05E-48 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF56059 673 932 1.08E-104 T 14-10-2018 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.40.50.20 554 662 3.9E-49 T 14-10-2018 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.204 T 14-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:1.10.1030.10 404 553 2.3E-44 T 14-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF52440 1 127 3.17E-49 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.30.470.20 119 403 1.2E-126 T 14-10-2018 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.40.50.1380 936 1068 1.4E-37 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 SMART SM00851 955 1041 3.0E-30 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Gene3D G3DSA:3.40.50.20 1 116 1.3E-48 T 14-10-2018 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 874 1.7E-35 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 2.2E-70 T 14-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 SUPERFAMILY SSF48108 396 554 7.85E-47 T 14-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0297 4c07bedc1c647ce63128d0eae61f4f64 1068 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 428 547 9.5E-37 T 14-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Thimo_0227 36349155937c3eb647d9911fc22254e7 477 SUPERFAMILY SSF53850 38 348 1.52E-33 T 14-10-2018 Thimo_0227 36349155937c3eb647d9911fc22254e7 477 Pfam PF16868 NMT1-like family 168 309 2.8E-9 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Thimo_0227 36349155937c3eb647d9911fc22254e7 477 Gene3D G3DSA:3.40.190.10 39 129 4.1E-5 T 14-10-2018 Thimo_0227 36349155937c3eb647d9911fc22254e7 477 Gene3D G3DSA:3.40.190.10 167 286 8.3E-18 T 14-10-2018 Thimo_1824 446204b1ba0ab0f9909a0bfe5b0db332 324 PIRSF PIRSF005427 2 322 1.4E-79 T 14-10-2018 IPR005588 MucB/RseB Thimo_1824 446204b1ba0ab0f9909a0bfe5b0db332 324 Pfam PF17188 MucB/RseB C-terminal domain 224 315 1.2E-23 T 14-10-2018 IPR033436 MucB/RseB, C-terminal Thimo_1824 446204b1ba0ab0f9909a0bfe5b0db332 324 Pfam PF03888 MucB/RseB N-terminal domain 35 205 3.6E-53 T 14-10-2018 IPR033434 MucB/RseB, N-terminal Thimo_1824 446204b1ba0ab0f9909a0bfe5b0db332 324 Gene3D G3DSA:2.50.20.10 34 213 2.4E-49 T 14-10-2018 Thimo_1824 446204b1ba0ab0f9909a0bfe5b0db332 324 Gene3D G3DSA:3.30.200.100 224 320 1.3E-19 T 14-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily Thimo_0218 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 Pfam PF00072 Response regulator receiver domain 4 112 9.8E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0218 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 SMART SM00448 1 112 3.6E-38 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0218 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 SUPERFAMILY SSF46894 128 221 5.95E-20 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_0218 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 5.7E-17 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_0218 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 SMART SM00862 146 220 6.1E-16 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_0218 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 SUPERFAMILY SSF52172 1 121 1.85E-36 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0218 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 Gene3D G3DSA:3.40.50.2300 1 124 1.6E-34 T 14-10-2018 Thimo_0218 9efe20ee0bad9b8de17e6bf0aa9ee3f2 226 Gene3D G3DSA:1.10.10.10 125 225 5.0E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 20 623 1.5E-268 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 ProSitePatterns PS00802 Transketolase signature 2. 432 448 - T 14-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 19 290 8.0E-120 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 SMART SM00861 326 490 1.1E-67 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 Gene3D G3DSA:3.40.50.970 325 496 4.7E-69 T 14-10-2018 Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 Pfam PF02779 Transketolase, pyrimidine binding domain 327 486 3.7E-38 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 SUPERFAMILY SSF52922 498 623 5.1E-32 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 Pfam PF02780 Transketolase, C-terminal domain 502 618 1.0E-24 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 SUPERFAMILY SSF52518 14 388 3.35E-79 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 Gene3D G3DSA:3.40.50.920 502 626 9.7E-42 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 ProSitePatterns PS00801 Transketolase signature 1. 44 63 - T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 18 627 45.929 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_0763 f6aedf7636e3a77f84f907fee5a51e0e 639 SUPERFAMILY SSF52518 324 511 6.82E-59 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1797 edd4dac503172f244fee244e7427254a 130 Pfam PF04023 FeoA domain 59 127 3.4E-13 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Thimo_1797 edd4dac503172f244fee244e7427254a 130 Gene3D G3DSA:2.30.30.90 57 130 8.5E-16 T 14-10-2018 IPR038157 Ferrous iron transporter, core domain Thimo_1797 edd4dac503172f244fee244e7427254a 130 SUPERFAMILY SSF50037 60 128 1.9E-10 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal Thimo_1797 edd4dac503172f244fee244e7427254a 130 SMART SM00899 58 128 1.9E-11 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Thimo_1734 fc3b6acb7bf8283c123e2d1c9724cc01 630 Gene3D G3DSA:3.20.20.540 214 526 1.3E-148 T 14-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Thimo_1734 fc3b6acb7bf8283c123e2d1c9724cc01 630 Pfam PF13667 ThiC-associated domain 22 99 2.2E-31 T 14-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Thimo_1734 fc3b6acb7bf8283c123e2d1c9724cc01 630 Pfam PF01964 Radical SAM ThiC family 139 590 1.6E-195 T 14-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Thimo_1734 fc3b6acb7bf8283c123e2d1c9724cc01 630 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 138 595 97.422 T 14-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Thimo_1734 fc3b6acb7bf8283c123e2d1c9724cc01 630 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 138 594 2.2E-212 T 14-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 SUPERFAMILY SSF55124 7 161 2.62E-59 T 14-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 SUPERFAMILY SSF54862 222 302 3.14E-16 T 14-10-2018 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 Gene3D G3DSA:3.30.413.10 159 397 5.1E-112 T 14-10-2018 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 89 150 9.8E-7 T 14-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 SUPERFAMILY SSF56014 162 400 4.25E-49 T 14-10-2018 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 TIGRFAM TIGR02064 dsrA: sulfite reductase, dissimilatory-type alpha subunit 11 413 1.2E-202 T 14-10-2018 IPR011806 Sulphite reductase, dissimilatory-type alpha subunit GO:0018551|GO:0020037|GO:0051539|GO:0055114 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 161 379 2.8E-35 T 14-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 Gene3D G3DSA:3.30.70.20 233 311 5.1E-112 T 14-10-2018 Thimo_0143 513d40a56fb60100c30179a33a7a18f3 417 Gene3D G3DSA:3.30.70.2500 60 158 1.4E-39 T 14-10-2018 Thimo_1371 7510e42310c6a0320f9938991b37a5bf 419 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 6 407 1.4E-96 T 14-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type Thimo_1371 7510e42310c6a0320f9938991b37a5bf 419 Pfam PF04403 Paraquat-inducible protein A 44 198 1.7E-50 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like Thimo_1371 7510e42310c6a0320f9938991b37a5bf 419 Pfam PF04403 Paraquat-inducible protein A 253 409 1.0E-59 T 14-10-2018 IPR007498 Intermembrane transport protein PqiA-like Thimo_0949 0d4a0a84c53fdaaf27998e051063a5bf 94 SUPERFAMILY SSF89155 7 68 9.07E-8 T 14-10-2018 IPR036411 TorD-like superfamily Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 SUPERFAMILY SSF52096 26 283 9.07E-84 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 164 182 7.2E-39 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 130 144 7.2E-39 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 252 261 7.2E-39 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 230 241 7.2E-39 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 201 218 7.2E-39 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 282 38.027 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 1.9E-126 T 14-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 Pfam PF01039 Carboxyl transferase domain 101 241 2.5E-14 T 14-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Thimo_2647 7cf56a23ede4d7f4b0ffec6ef29a46e0 337 Gene3D G3DSA:3.90.226.10 26 287 1.2E-83 T 14-10-2018 Thimo_3030 e18942fed6dde43db3c195fc91231126 399 SUPERFAMILY SSF53383 19 393 1.46E-104 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_3030 e18942fed6dde43db3c195fc91231126 399 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 245 254 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 Thimo_3030 e18942fed6dde43db3c195fc91231126 399 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 14 394 50.829 T 14-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Thimo_3030 e18942fed6dde43db3c195fc91231126 399 Gene3D G3DSA:3.90.1150.10 52 388 3.6E-130 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_3030 e18942fed6dde43db3c195fc91231126 399 Gene3D G3DSA:3.40.640.10 68 296 3.6E-130 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_3030 e18942fed6dde43db3c195fc91231126 399 Pfam PF00155 Aminotransferase class I and II 51 390 7.9E-59 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Thimo_3030 e18942fed6dde43db3c195fc91231126 399 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 31 390 5.0E-144 T 14-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Thimo_1586 b433a9519089b4825abf7283fcf9fa9d 507 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 25 184 1.2E-43 T 14-10-2018 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices Thimo_1586 b433a9519089b4825abf7283fcf9fa9d 507 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 258 503 5.7E-105 T 14-10-2018 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 14-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Gene3D G3DSA:3.40.47.10 127 390 1.9E-160 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 392 1.7E-149 T 14-10-2018 IPR002155 Thiolase GO:0016747 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Pfam PF00108 Thiolase, N-terminal domain 5 264 2.1E-110 T 14-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 SUPERFAMILY SSF53901 272 393 6.06E-46 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 14-10-2018 IPR020610 Thiolase, active site GO:0016747 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 PIRSF PIRSF000429 1 394 8.1E-136 T 14-10-2018 IPR002155 Thiolase GO:0016747 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 14-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 SUPERFAMILY SSF53901 5 271 1.38E-90 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Gene3D G3DSA:3.40.47.10 7 277 1.9E-160 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_1642 9667d7a3d3d30a7f8693ff5fdcc25c7a 394 Pfam PF02803 Thiolase, C-terminal domain 271 393 1.6E-53 T 14-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 SUPERFAMILY SSF56719 35 487 2.88E-154 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 747 34.388 T 14-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 469 2.9E-132 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 Gene3D G3DSA:3.30.1360.40 242 335 1.1E-176 T 14-10-2018 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 SMART SM00434 15 465 3.1E-226 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 Gene3D G3DSA:3.90.199.10 36 485 1.1E-176 T 14-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 Gene3D G3DSA:2.120.10.90 504 740 8.8E-10 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 13 744 0.0 T 14-10-2018 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 Gene3D G3DSA:1.10.268.10 373 458 1.1E-176 T 14-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Thimo_0452 12e929cce5f338fa4e6f8db53bee9cc6 749 SUPERFAMILY SSF101904 502 745 1.57E-50 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Thimo_2070 7735e10319d5ed3d710fa80141df4e91 306 Gene3D G3DSA:1.10.3720.10 85 299 1.6E-27 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2070 7735e10319d5ed3d710fa80141df4e91 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 1.4E-43 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_2070 7735e10319d5ed3d710fa80141df4e91 306 SUPERFAMILY SSF161098 90 290 4.97E-22 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1585 30e3f916a5ca524816fecee81ac64778 339 SUPERFAMILY SSF56059 33 277 9.48E-19 T 14-10-2018 Thimo_1585 30e3f916a5ca524816fecee81ac64778 339 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 7 313 2.4E-126 T 14-10-2018 IPR011758 Alpha-L-glutamate ligase-related protein Thimo_1585 30e3f916a5ca524816fecee81ac64778 339 Pfam PF14397 Sugar-transfer associated ATP-grasp 20 291 3.9E-100 T 14-10-2018 IPR039523 Alpha-L-glutamate ligase-related protein, ATP-grasp domain KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Thimo_1854 d1db7db6ecc2c198d98b61955bdd9954 389 Gene3D G3DSA:1.20.1530.20 4 377 6.9E-61 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily Thimo_1854 d1db7db6ecc2c198d98b61955bdd9954 389 Pfam PF00999 Sodium/hydrogen exchanger family 12 368 6.6E-47 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Thimo_0138 f2e8c5adb541d19f5568af6deac756c6 439 Pfam PF01523 Putative modulator of DNA gyrase 29 299 4.2E-16 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Thimo_0138 f2e8c5adb541d19f5568af6deac756c6 439 SUPERFAMILY SSF111283 8 437 7.98E-51 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 9.5E-21 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 SUPERFAMILY SSF47446 298 431 1.31E-44 T 14-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 Pfam PF02978 Signal peptide binding domain 329 427 1.5E-32 T 14-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 SUPERFAMILY SSF52540 42 351 1.71E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.212 T 14-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 Gene3D G3DSA:1.10.260.30 328 450 1.2E-43 T 14-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 Gene3D G3DSA:1.20.120.140 4 305 7.2E-124 T 14-10-2018 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 SMART SM00963 1 86 9.4E-36 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 Gene3D G3DSA:3.40.50.300 90 285 7.2E-124 T 14-10-2018 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 SMART SM00382 99 252 3.1E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 SMART SM00962 100 296 9.6E-116 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 6.4E-177 T 14-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 Thimo_0513 6572ff778aa6f5e2ff258565c907c910 463 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 1.5E-72 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_2710 7a95e57613ac06f3cc1c8064a89c4463 376 SUPERFAMILY SSF53383 3 375 2.55E-94 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2710 7a95e57613ac06f3cc1c8064a89c4463 376 Gene3D G3DSA:3.90.1150.10 3 375 1.3E-123 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2710 7a95e57613ac06f3cc1c8064a89c4463 376 Gene3D G3DSA:3.40.640.10 14 261 1.3E-123 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2710 7a95e57613ac06f3cc1c8064a89c4463 376 TIGRFAM TIGR03235 DNA_S_dndA: cysteine desulfurase DndA 4 356 1.2E-154 T 14-10-2018 IPR017644 Cysteine desulfurase DndA Thimo_2710 7a95e57613ac06f3cc1c8064a89c4463 376 Pfam PF00266 Aminotransferase class-V 3 361 1.6E-68 T 14-10-2018 IPR000192 Aminotransferase class V domain Thimo_2710 7a95e57613ac06f3cc1c8064a89c4463 376 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 194 213 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_2710 7a95e57613ac06f3cc1c8064a89c4463 376 PIRSF PIRSF005572 1 376 1.9E-108 T 14-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 Pfam PF03063 Prismane/CO dehydrogenase family 3 535 1.0E-171 T 14-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 Gene3D G3DSA:1.20.1270.20 136 218 2.0E-30 T 14-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 Gene3D G3DSA:1.20.1270.20 1 135 2.7E-39 T 14-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 Hamap MF_00069 Hydroxylamine reductase [hcp]. 3 540 23.163 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 PIRSF PIRSF000076 3 541 1.3E-249 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 Gene3D G3DSA:3.40.50.2030 370 539 4.9E-63 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 Gene3D G3DSA:3.40.50.2030 220 369 7.2E-68 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 3 538 2.9E-227 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Thimo_3368 5c45a3e5aaaa89c351db2e7150f6d24e 542 SUPERFAMILY SSF56821 3 539 2.29E-202 T 14-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 Thimo_0181 052b71801730bd9b61a4870df5cf7af9 152 SUPERFAMILY SSF52304 4 147 2.88E-58 T 14-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Thimo_0181 052b71801730bd9b61a4870df5cf7af9 152 Gene3D G3DSA:3.40.50.9100 1 149 1.4E-60 T 14-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Thimo_0181 052b71801730bd9b61a4870df5cf7af9 152 Pfam PF01220 Dehydroquinase class II 4 140 3.2E-55 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Thimo_0181 052b71801730bd9b61a4870df5cf7af9 152 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 141 1.1E-55 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Thimo_0181 052b71801730bd9b61a4870df5cf7af9 152 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 16 133 1.0E-43 T 14-10-2018 Thimo_0181 052b71801730bd9b61a4870df5cf7af9 152 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 152 67.408 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Thimo_0181 052b71801730bd9b61a4870df5cf7af9 152 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 14-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Thimo_0181 052b71801730bd9b61a4870df5cf7af9 152 PIRSF PIRSF001399 1 146 6.2E-54 T 14-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 Gene3D G3DSA:3.40.50.12740 1 211 2.7E-63 T 14-10-2018 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 Pfam PF00072 Response regulator receiver domain 3 113 7.1E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 9.5E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 9.5E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 9.5E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 9.4E-19 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 SMART SM00448 1 113 7.6E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 SUPERFAMILY SSF46894 144 210 7.82E-21 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_2335 71af633665d0e46c4829185678ee6e05 232 SUPERFAMILY SSF52172 1 123 2.28E-34 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2335 71af633665d0e46c4829185678ee6e05 232 SMART SM00421 148 205 1.6E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2361 3289b9f9e541445485f35dd7d8da80ab 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 234 5.4E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2361 3289b9f9e541445485f35dd7d8da80ab 244 Gene3D G3DSA:1.10.10.10 130 240 1.9E-32 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2361 3289b9f9e541445485f35dd7d8da80ab 244 SMART SM00862 158 234 3.6E-23 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2361 3289b9f9e541445485f35dd7d8da80ab 244 SMART SM00448 5 117 1.1E-43 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2361 3289b9f9e541445485f35dd7d8da80ab 244 SUPERFAMILY SSF52172 3 126 7.68E-43 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2361 3289b9f9e541445485f35dd7d8da80ab 244 Gene3D G3DSA:3.40.50.2300 1 129 5.7E-40 T 14-10-2018 Thimo_2361 3289b9f9e541445485f35dd7d8da80ab 244 Pfam PF00072 Response regulator receiver domain 7 118 5.8E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2361 3289b9f9e541445485f35dd7d8da80ab 244 SUPERFAMILY SSF46894 140 235 4.25E-24 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_0666 e646d18a05cf6104c689d773aa2ebc13 296 SUPERFAMILY SSF52540 3 294 2.71E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0666 e646d18a05cf6104c689d773aa2ebc13 296 Gene3D G3DSA:3.40.50.300 1 296 2.1E-117 T 14-10-2018 Thimo_0666 e646d18a05cf6104c689d773aa2ebc13 296 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 220 9.4E-72 T 14-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 Thimo_0666 e646d18a05cf6104c689d773aa2ebc13 296 PRINTS PR00478 Phosphoribulokinase family signature 188 211 1.7E-35 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 Thimo_0666 e646d18a05cf6104c689d773aa2ebc13 296 PRINTS PR00478 Phosphoribulokinase family signature 132 150 1.7E-35 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 Thimo_0666 e646d18a05cf6104c689d773aa2ebc13 296 PRINTS PR00478 Phosphoribulokinase family signature 12 29 1.7E-35 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 Thimo_0666 e646d18a05cf6104c689d773aa2ebc13 296 PRINTS PR00478 Phosphoribulokinase family signature 170 187 1.7E-35 T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 Thimo_0666 e646d18a05cf6104c689d773aa2ebc13 296 ProSitePatterns PS00567 Phosphoribulokinase signature. 170 183 - T 14-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 Thimo_2355 763fe71cbe13e2a866cf3e31ae9da123 178 Pfam PF01750 Hydrogenase maturation protease 32 151 5.6E-5 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2355 763fe71cbe13e2a866cf3e31ae9da123 178 SUPERFAMILY SSF53163 12 157 6.67E-30 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Thimo_2355 763fe71cbe13e2a866cf3e31ae9da123 178 Gene3D G3DSA:3.40.50.1450 12 159 1.5E-33 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Thimo_2355 763fe71cbe13e2a866cf3e31ae9da123 178 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 14 154 2.4E-23 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 Pfam PF00563 EAL domain 533 768 1.1E-51 T 14-10-2018 IPR001633 EAL domain Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SUPERFAMILY SSF141868 532 781 1.18E-62 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 Pfam PF00989 PAS fold 92 205 6.2E-10 T 14-10-2018 IPR013767 PAS fold GO:0006355 Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 Gene3D G3DSA:3.20.20.450 527 783 2.4E-72 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 Pfam PF08447 PAS fold 266 333 7.8E-13 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 Gene3D G3DSA:3.30.70.270 352 526 5.1E-56 T 14-10-2018 Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 355 514 1.4E-39 T 14-10-2018 IPR000160 GGDEF domain Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 Pfam PF00990 Diguanylate cyclase, GGDEF domain 356 511 6.6E-45 T 14-10-2018 IPR000160 GGDEF domain Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00052 527 773 1.1E-61 T 14-10-2018 IPR001633 EAL domain Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 Gene3D G3DSA:3.30.450.20 77 206 2.0E-17 T 14-10-2018 Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 Gene3D G3DSA:3.30.450.20 216 341 9.5E-17 T 14-10-2018 Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SUPERFAMILY SSF55785 274 347 5.76E-13 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SUPERFAMILY SSF55073 361 518 1.65E-48 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SUPERFAMILY SSF55785 78 206 7.68E-18 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00086 303 345 0.002 T 14-10-2018 IPR001610 PAC motif Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00086 163 208 40.0 T 14-10-2018 IPR001610 PAC motif Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00267 344 517 2.2E-53 T 14-10-2018 IPR000160 GGDEF domain Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 89 214 1.9E-9 T 14-10-2018 IPR000014 PAS domain Thimo_2490 7e33637a236c7e6571e45bc666b3b349 790 SMART SM00091 91 157 8.3E-7 T 14-10-2018 IPR000014 PAS domain Thimo_0066 b36789d20b9ab29d28fd88a96891144a 320 SUPERFAMILY SSF55166 13 115 1.41E-10 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_0066 b36789d20b9ab29d28fd88a96891144a 320 SUPERFAMILY SSF53955 259 313 3.37E-6 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_0066 b36789d20b9ab29d28fd88a96891144a 320 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 49 114 5.0E-9 T 14-10-2018 IPR039561 Peptidase M15C GO:0008233 Thimo_0066 b36789d20b9ab29d28fd88a96891144a 320 Gene3D G3DSA:3.30.1380.10 7 114 4.2E-12 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_2400 f3a746ec4886fca64c7738d51dc9a817 182 SMART SM00855 15 129 1.6E-6 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_2400 f3a746ec4886fca64c7738d51dc9a817 182 Gene3D G3DSA:3.40.50.1240 5 179 4.3E-46 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_2400 f3a746ec4886fca64c7738d51dc9a817 182 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 16 99 1.3E-12 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_2400 f3a746ec4886fca64c7738d51dc9a817 182 SUPERFAMILY SSF53254 14 158 2.83E-31 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_2046 47b60ff6d9cad865a5340357cdf553f3 329 Hamap MF_01497 Stress response kinase A [srkA]. 5 322 47.114 T 14-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 Thimo_2046 47b60ff6d9cad865a5340357cdf553f3 329 Gene3D G3DSA:1.20.1270.170 150 311 6.6E-118 T 14-10-2018 Thimo_2046 47b60ff6d9cad865a5340357cdf553f3 329 SUPERFAMILY SSF56112 6 328 6.12E-82 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_2046 47b60ff6d9cad865a5340357cdf553f3 329 Gene3D G3DSA:3.30.200.70 14 109 6.6E-118 T 14-10-2018 Thimo_2046 47b60ff6d9cad865a5340357cdf553f3 329 Gene3D G3DSA:1.10.510.10 61 262 6.6E-118 T 14-10-2018 Thimo_2046 47b60ff6d9cad865a5340357cdf553f3 329 Pfam PF01636 Phosphotransferase enzyme family 36 257 1.0E-33 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase Thimo_0500 3589ac0fc902c94f0ce7b99ab492799f 472 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 276 457 1.3E-33 T 14-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Thimo_0500 3589ac0fc902c94f0ce7b99ab492799f 472 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 43 458 37.603 T 14-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Thimo_0500 3589ac0fc902c94f0ce7b99ab492799f 472 SUPERFAMILY SSF52540 45 231 2.98E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0500 3589ac0fc902c94f0ce7b99ab492799f 472 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 47 224 3.8E-16 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0500 3589ac0fc902c94f0ce7b99ab492799f 472 Gene3D G3DSA:3.40.50.880 284 466 2.4E-10 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0500 3589ac0fc902c94f0ce7b99ab492799f 472 Gene3D G3DSA:3.40.50.300 82 221 1.2E-11 T 14-10-2018 Thimo_0500 3589ac0fc902c94f0ce7b99ab492799f 472 SUPERFAMILY SSF52317 274 466 4.42E-33 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1209 b39f6c0d350eaefb5a6fd5c638f83cd0 149 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 113 8.8E-24 T 14-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like Thimo_1209 b39f6c0d350eaefb5a6fd5c638f83cd0 149 SUPERFAMILY SSF110857 3 118 9.03E-30 T 14-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily Thimo_1209 b39f6c0d350eaefb5a6fd5c638f83cd0 149 Gene3D G3DSA:3.10.490.10 3 119 1.2E-34 T 14-10-2018 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 15 159 2.5E-41 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 61 80 2.3E-21 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 280 303 2.3E-21 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 2.3E-21 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 147 158 2.3E-21 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 15 315 4.0E-91 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 SUPERFAMILY SSF53671 14 317 7.07E-97 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 14 317 41.404 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 61 68 - T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 168 313 1.2E-25 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 Gene3D G3DSA:3.40.50.1370 15 313 5.5E-91 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 Gene3D G3DSA:3.40.50.1370 147 302 5.5E-91 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 146 163 4.4E-33 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 231 240 4.4E-33 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 272 277 4.4E-33 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 51 73 4.4E-33 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 296 310 4.4E-33 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_2556 027fbbeeb2b84b853c8dc26a41f38fa4 328 PRINTS PR00101 Aspartate carbamoyltransferase signature 89 98 4.4E-33 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_1102 e37f07029167e46b26d23f3477af8d8f 379 SUPERFAMILY SSF103473 3 377 2.62E-45 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_1102 e37f07029167e46b26d23f3477af8d8f 379 Gene3D G3DSA:1.20.1250.20 188 378 1.7E-41 T 14-10-2018 Thimo_1102 e37f07029167e46b26d23f3477af8d8f 379 Gene3D G3DSA:1.20.1250.20 1 179 6.9E-20 T 14-10-2018 Thimo_1102 e37f07029167e46b26d23f3477af8d8f 379 Pfam PF12832 MFS_1 like family 3 356 2.7E-90 T 14-10-2018 IPR024989 Major facilitator superfamily associated domain Thimo_1102 e37f07029167e46b26d23f3477af8d8f 379 PIRSF PIRSF004925 1 378 1.6E-103 T 14-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter Thimo_2062 d79763a4f143cbecd39e2f8a60a3021e 230 SMART SM00862 150 226 6.7E-19 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2062 d79763a4f143cbecd39e2f8a60a3021e 230 Gene3D G3DSA:3.40.50.2300 1 126 1.4E-31 T 14-10-2018 Thimo_2062 d79763a4f143cbecd39e2f8a60a3021e 230 Pfam PF00072 Response regulator receiver domain 8 116 5.4E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2062 d79763a4f143cbecd39e2f8a60a3021e 230 SUPERFAMILY SSF52172 3 128 3.27E-37 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2062 d79763a4f143cbecd39e2f8a60a3021e 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.7E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2062 d79763a4f143cbecd39e2f8a60a3021e 230 SMART SM00448 6 116 2.5E-38 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2062 d79763a4f143cbecd39e2f8a60a3021e 230 Gene3D G3DSA:1.10.10.10 132 230 4.3E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2062 d79763a4f143cbecd39e2f8a60a3021e 230 SUPERFAMILY SSF46894 135 227 1.23E-22 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_2981 5cfdb54657170a37440619df94c14b2d 188 SUPERFAMILY SSF50814 13 182 1.28E-42 T 14-10-2018 IPR012674 Calycin Thimo_2981 5cfdb54657170a37440619df94c14b2d 188 Pfam PF08212 Lipocalin-like domain 37 182 1.1E-44 T 14-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain Thimo_2981 5cfdb54657170a37440619df94c14b2d 188 PIRSF PIRSF036893 7 188 5.7E-54 T 14-10-2018 IPR022271 Lipocalin, ApoD type Thimo_2981 5cfdb54657170a37440619df94c14b2d 188 ProSitePatterns PS00213 Lipocalin signature. 36 49 - T 14-10-2018 IPR022272 Lipocalin family conserved site Thimo_2981 5cfdb54657170a37440619df94c14b2d 188 Gene3D G3DSA:2.40.128.20 25 187 1.6E-48 T 14-10-2018 IPR012674 Calycin Thimo_3490 b44a60b5e66cd0c3033bf6da313bdb6c 424 PIRSF PIRSF006060 1 422 2.0E-48 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Thimo_3490 b44a60b5e66cd0c3033bf6da313bdb6c 424 Gene3D G3DSA:1.20.1740.10 2 418 1.2E-77 T 14-10-2018 Thimo_3490 b44a60b5e66cd0c3033bf6da313bdb6c 424 Pfam PF13520 Amino acid permease 11 361 3.0E-33 T 14-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Thimo_2905 294bcc3fee8b61c8a335d9f95c83dbdc 214 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 183 196 - T 14-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Thimo_2905 294bcc3fee8b61c8a335d9f95c83dbdc 214 PIRSF PIRSF000190 2 214 2.8E-79 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Thimo_2905 294bcc3fee8b61c8a335d9f95c83dbdc 214 Gene3D G3DSA:2.30.110.10 15 214 1.5E-81 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Thimo_2905 294bcc3fee8b61c8a335d9f95c83dbdc 214 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 7 214 5.9E-83 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Thimo_2905 294bcc3fee8b61c8a335d9f95c83dbdc 214 SUPERFAMILY SSF50475 19 214 1.78E-67 T 14-10-2018 Thimo_2905 294bcc3fee8b61c8a335d9f95c83dbdc 214 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 173 214 2.5E-22 T 14-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Thimo_2905 294bcc3fee8b61c8a335d9f95c83dbdc 214 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 36 118 9.3E-25 T 14-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Thimo_2905 294bcc3fee8b61c8a335d9f95c83dbdc 214 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 11 214 39.109 T 14-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Thimo_3504 d72fac0d229dbad22a34059200195fe1 145 Pfam PF09335 SNARE associated Golgi protein 23 137 9.2E-12 T 14-10-2018 IPR032816 SNARE associated Golgi protein Thimo_3166 0ddb85f4ad8ba23b4b2df7ca75bf9f50 190 Pfam PF14341 PilX N-terminal 12 62 6.4E-17 T 14-10-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain Thimo_3166 0ddb85f4ad8ba23b4b2df7ca75bf9f50 190 Pfam PF13681 Type IV pilus assembly protein PilX C-term 97 183 6.8E-20 T 14-10-2018 IPR025205 PilX/PilW C-terminal domain Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 Pfam PF13291 ACT domain 641 716 3.5E-15 T 14-10-2018 IPR002912 ACT domain Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 SUPERFAMILY SSF109604 23 207 2.56E-68 T 14-10-2018 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 Gene3D G3DSA:3.10.20.30 397 472 4.5E-29 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 SMART SM00954 252 362 1.7E-53 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 SUPERFAMILY SSF55021 646 716 3.82E-9 T 14-10-2018 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 43 713 7.9E-221 T 14-10-2018 IPR004811 RelA/SpoT family GO:0015969 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 Pfam PF02824 TGS domain 404 463 1.9E-18 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 Gene3D G3DSA:3.30.70.260 640 722 2.5E-14 T 14-10-2018 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 SUPERFAMILY SSF81271 391 463 5.89E-21 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 Gene3D G3DSA:3.30.460.10 211 341 2.4E-43 T 14-10-2018 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 Pfam PF13328 HD domain 43 192 1.9E-49 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 Gene3D G3DSA:1.10.3210.10 17 207 1.3E-73 T 14-10-2018 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 SMART SM00471 58 170 8.2E-11 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 SUPERFAMILY SSF81301 197 408 4.09E-56 T 14-10-2018 Thimo_0757 d0bda10ae1bbb75172990791c6c61e7e 725 Pfam PF04607 Region found in RelA / SpoT proteins 252 361 1.9E-33 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 Thimo_1360 e35e34664364d03e66f94c8ee2486a3b 257 SUPERFAMILY SSF69618 10 250 4.05E-49 T 14-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1360 e35e34664364d03e66f94c8ee2486a3b 257 Gene3D G3DSA:3.40.50.10090 41 170 5.6E-67 T 14-10-2018 Thimo_1360 e35e34664364d03e66f94c8ee2486a3b 257 Pfam PF02602 Uroporphyrinogen-III synthase HemD 23 245 2.6E-42 T 14-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Thimo_1360 e35e34664364d03e66f94c8ee2486a3b 257 Gene3D G3DSA:3.40.50.10090 12 242 5.6E-67 T 14-10-2018 Thimo_2995 4ac5f41c74c78439c4975fe6a0b00242 47 Gene3D G3DSA:1.20.5.250 1 47 7.2E-19 T 14-10-2018 Thimo_2995 4ac5f41c74c78439c4975fe6a0b00242 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.6E-10 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2995 4ac5f41c74c78439c4975fe6a0b00242 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2995 4ac5f41c74c78439c4975fe6a0b00242 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2995 4ac5f41c74c78439c4975fe6a0b00242 47 SUPERFAMILY SSF56918 4 47 1.81E-12 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2988 4ac5f41c74c78439c4975fe6a0b00242 47 Gene3D G3DSA:1.20.5.250 1 47 7.2E-19 T 14-10-2018 Thimo_2988 4ac5f41c74c78439c4975fe6a0b00242 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.6E-10 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2988 4ac5f41c74c78439c4975fe6a0b00242 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2988 4ac5f41c74c78439c4975fe6a0b00242 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2988 4ac5f41c74c78439c4975fe6a0b00242 47 SUPERFAMILY SSF56918 4 47 1.81E-12 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2506 f93ed4de1286a9895c5d66ad519cf7a8 419 Pfam PF12704 MacB-like periplasmic core domain 19 206 2.7E-11 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Thimo_2506 f93ed4de1286a9895c5d66ad519cf7a8 419 Pfam PF02687 FtsX-like permease family 317 410 1.9E-8 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_1287 ae5b3ba3e159a54da4872a70942729f2 1130 Pfam PF13558 Putative exonuclease SbcCD, C subunit 968 1056 3.9E-21 T 14-10-2018 Thimo_1287 ae5b3ba3e159a54da4872a70942729f2 1130 Pfam PF13555 P-loop containing region of AAA domain 17 76 4.0E-23 T 14-10-2018 Thimo_1287 ae5b3ba3e159a54da4872a70942729f2 1130 Gene3D G3DSA:3.40.50.300 782 1075 1.1E-5 T 14-10-2018 Thimo_1287 ae5b3ba3e159a54da4872a70942729f2 1130 SUPERFAMILY SSF52540 16 323 3.28E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1287 ae5b3ba3e159a54da4872a70942729f2 1130 SUPERFAMILY SSF52540 42 1069 2.18E-10 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1287 ae5b3ba3e159a54da4872a70942729f2 1130 Gene3D G3DSA:3.40.1140.10 10 182 4.3E-6 T 14-10-2018 Thimo_2954 a7632d06bc3fc93c467f04b94288cb2f 106 SUPERFAMILY SSF143414 9 95 5.49E-28 T 14-10-2018 IPR037233 CcmK-like superfamily Thimo_2954 a7632d06bc3fc93c467f04b94288cb2f 106 Pfam PF00936 BMC domain 9 85 9.3E-26 T 14-10-2018 IPR000249 Microcompartment protein, bacteria Thimo_2954 a7632d06bc3fc93c467f04b94288cb2f 106 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 26 45 - T 14-10-2018 IPR020808 Bacterial microcompartments protein, conserved site Thimo_2954 a7632d06bc3fc93c467f04b94288cb2f 106 Gene3D G3DSA:3.30.70.1710 2 91 2.6E-36 T 14-10-2018 Thimo_2954 a7632d06bc3fc93c467f04b94288cb2f 106 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 9 70 3.0E-19 T 14-10-2018 Thimo_2954 a7632d06bc3fc93c467f04b94288cb2f 106 SMART SM00877 8 85 8.5E-31 T 14-10-2018 IPR000249 Microcompartment protein, bacteria Thimo_1945 43feb2bb8c61ff18fd1ef0933c03e9ef 362 Pfam PF00534 Glycosyl transferases group 1 179 335 5.2E-32 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1945 43feb2bb8c61ff18fd1ef0933c03e9ef 362 Pfam PF13439 Glycosyltransferase Family 4 14 158 1.9E-16 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1945 43feb2bb8c61ff18fd1ef0933c03e9ef 362 SUPERFAMILY SSF53756 2 357 3.31E-76 T 14-10-2018 Thimo_1945 43feb2bb8c61ff18fd1ef0933c03e9ef 362 Gene3D G3DSA:3.40.50.2000 14 347 1.9E-64 T 14-10-2018 Thimo_1945 43feb2bb8c61ff18fd1ef0933c03e9ef 362 Gene3D G3DSA:3.40.50.2000 158 341 1.9E-64 T 14-10-2018 Thimo_2940 93cb6f86436d35d47123bb811e277711 354 SUPERFAMILY SSF103088 245 352 6.41E-34 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_2940 93cb6f86436d35d47123bb811e277711 354 Pfam PF00691 OmpA family 251 347 1.1E-19 T 14-10-2018 IPR006665 OmpA-like domain Thimo_2940 93cb6f86436d35d47123bb811e277711 354 Gene3D G3DSA:3.30.1330.60 219 354 7.4E-36 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_2940 93cb6f86436d35d47123bb811e277711 354 PRINTS PR01021 OMPA domain signature 252 274 6.6E-16 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_2940 93cb6f86436d35d47123bb811e277711 354 PRINTS PR01021 OMPA domain signature 282 297 6.6E-16 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_2940 93cb6f86436d35d47123bb811e277711 354 PRINTS PR01021 OMPA domain signature 297 313 6.6E-16 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_2880 271a37ea735702db1fc4595312d9bbe0 463 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 32 437 3.7E-29 T 14-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Thimo_2880 271a37ea735702db1fc4595312d9bbe0 463 SUPERFAMILY SSF56935 26 442 3.05E-47 T 14-10-2018 Thimo_2880 271a37ea735702db1fc4595312d9bbe0 463 Gene3D G3DSA:2.40.160.60 25 463 2.9E-87 T 14-10-2018 Thimo_1645 03bdd756c5d8a46c265a0ab2734fea15 124 Pfam PF09361 Phasin protein 11 100 8.7E-13 T 14-10-2018 IPR018968 Phasin Thimo_3372 f8ef7d3bb8e9553c07779f29bba7dd7d 154 SUPERFAMILY SSF88697 1 153 2.24E-58 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_3372 f8ef7d3bb8e9553c07779f29bba7dd7d 154 Gene3D G3DSA:3.10.590.10 1 154 2.8E-62 T 14-10-2018 Thimo_3372 f8ef7d3bb8e9553c07779f29bba7dd7d 154 Pfam PF01878 EVE domain 3 152 8.4E-54 T 14-10-2018 IPR002740 EVE domain Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 SUPERFAMILY SSF52964 28 159 1.44E-33 T 14-10-2018 Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF04052 TolB amino-terminal domain 23 127 4.2E-25 T 14-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 Gene3D G3DSA:2.120.10.30 163 430 7.6E-94 T 14-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 4 425 46.537 T 14-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 SUPERFAMILY SSF69304 152 427 2.75E-59 T 14-10-2018 Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 Gene3D G3DSA:3.40.50.10070 19 162 5.6E-39 T 14-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 17 426 1.5E-150 T 14-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF07676 WD40-like Beta Propeller Repeat 240 271 6.6E-7 T 14-10-2018 IPR011659 WD40-like Beta Propeller Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF07676 WD40-like Beta Propeller Repeat 279 315 6.8E-15 T 14-10-2018 IPR011659 WD40-like Beta Propeller Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF07676 WD40-like Beta Propeller Repeat 194 226 1.1E-8 T 14-10-2018 IPR011659 WD40-like Beta Propeller Thimo_0574 aa77e76554b7ba88e5344e78fb8e0019 430 Pfam PF07676 WD40-like Beta Propeller Repeat 370 392 0.06 T 14-10-2018 IPR011659 WD40-like Beta Propeller Thimo_1939 2d78c0d5b86ea7a86e1c5914dd571c5d 400 Gene3D G3DSA:3.40.50.2000 1 204 1.2E-36 T 14-10-2018 Thimo_1939 2d78c0d5b86ea7a86e1c5914dd571c5d 400 Gene3D G3DSA:3.40.50.2000 205 365 4.5E-43 T 14-10-2018 Thimo_1939 2d78c0d5b86ea7a86e1c5914dd571c5d 400 Pfam PF13439 Glycosyltransferase Family 4 14 184 7.5E-32 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1939 2d78c0d5b86ea7a86e1c5914dd571c5d 400 SUPERFAMILY SSF53756 2 381 7.75E-87 T 14-10-2018 Thimo_1939 2d78c0d5b86ea7a86e1c5914dd571c5d 400 Pfam PF00534 Glycosyl transferases group 1 196 360 3.8E-37 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_2407 53bb178fca7c76eb458dbbcfdf6ae2a8 491 Pfam PF00361 Proton-conducting membrane transporter 127 412 1.4E-60 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2407 53bb178fca7c76eb458dbbcfdf6ae2a8 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 305 317 1.8E-5 T 14-10-2018 Thimo_2407 53bb178fca7c76eb458dbbcfdf6ae2a8 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 236 262 1.8E-5 T 14-10-2018 Thimo_2407 53bb178fca7c76eb458dbbcfdf6ae2a8 491 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 214 235 1.8E-5 T 14-10-2018 Thimo_0698 487d04b7f14a7dba376824664fc0b1ee 481 Gene3D G3DSA:3.40.50.11290 220 317 9.7E-41 T 14-10-2018 Thimo_0698 487d04b7f14a7dba376824664fc0b1ee 481 Pfam PF14403 Circularly permuted ATP-grasp type 2 81 457 1.2E-159 T 14-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 Thimo_0698 487d04b7f14a7dba376824664fc0b1ee 481 Gene3D G3DSA:3.30.1490.270 354 414 8.7E-22 T 14-10-2018 Thimo_0698 487d04b7f14a7dba376824664fc0b1ee 481 PIRSF PIRSF005522 1 481 2.9E-214 T 14-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 Thimo_0698 487d04b7f14a7dba376824664fc0b1ee 481 SUPERFAMILY SSF56059 54 472 1.44E-59 T 14-10-2018 Thimo_2934 8ed826ac87e10f07a385eb622595da01 353 Gene3D G3DSA:1.10.8.300 235 350 2.6E-33 T 14-10-2018 Thimo_2934 8ed826ac87e10f07a385eb622595da01 353 Gene3D G3DSA:3.40.50.300 32 231 2.1E-47 T 14-10-2018 Thimo_2934 8ed826ac87e10f07a385eb622595da01 353 SUPERFAMILY SSF52540 39 326 1.15E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2934 8ed826ac87e10f07a385eb622595da01 353 PIRSF PIRSF002849 10 353 7.0E-125 T 14-10-2018 Thimo_2934 8ed826ac87e10f07a385eb622595da01 353 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 69 199 9.2E-63 T 14-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Thimo_1221 275d8464f968cf1c66ca4ee0683ce578 283 SUPERFAMILY SSF103501 83 230 9.81E-6 T 14-10-2018 IPR036197 NarG-like superfamily Thimo_2256 694775e3256238a70e0537ac57646840 270 Gene3D G3DSA:3.40.50.150 18 205 4.4E-45 T 14-10-2018 Thimo_2256 694775e3256238a70e0537ac57646840 270 SUPERFAMILY SSF53335 7 215 1.84E-43 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2256 694775e3256238a70e0537ac57646840 270 Pfam PF13847 Methyltransferase domain 38 144 9.2E-24 T 14-10-2018 IPR025714 Methyltransferase domain Thimo_2933 ecd79a71b5fc6229e000f3f83eeb076e 314 Pfam PF01882 Protein of unknown function DUF58 59 143 1.4E-20 T 14-10-2018 IPR002881 Domain of unknown function DUF58 Thimo_2933 ecd79a71b5fc6229e000f3f83eeb076e 314 SUPERFAMILY SSF53300 95 228 1.22E-6 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0543 b91330b29faf08ea5aaec607fdac80f4 1131 SMART SM00460 172 248 4.2E-19 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_0543 b91330b29faf08ea5aaec607fdac80f4 1131 Pfam PF01841 Transglutaminase-like superfamily 130 246 2.0E-20 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_0543 b91330b29faf08ea5aaec607fdac80f4 1131 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 6 83 1.6E-26 T 14-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal Thimo_0543 b91330b29faf08ea5aaec607fdac80f4 1131 SUPERFAMILY SSF54001 8 337 7.57E-70 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Thimo_0543 b91330b29faf08ea5aaec607fdac80f4 1131 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 276 1126 0.0 T 14-10-2018 IPR018667 Domain of unknown function DUF2126 Thimo_0543 b91330b29faf08ea5aaec607fdac80f4 1131 Gene3D G3DSA:3.10.620.30 96 281 1.3E-27 T 14-10-2018 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 380 534 7.6E-53 T 14-10-2018 IPR001162 UvrC family homology region Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 Pfam PF02151 UvrB/uvrC motif 202 236 2.8E-8 T 14-10-2018 IPR001943 UVR domain GO:0005515 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 SUPERFAMILY SSF47781 513 602 9.21E-23 T 14-10-2018 IPR010994 RuvA domain 2-like Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 Pfam PF01541 GIY-YIG catalytic domain 18 90 5.6E-7 T 14-10-2018 IPR000305 GIY-YIG endonuclease Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 SMART SM00278 580 599 29.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 SMART SM00278 548 567 76.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 SUPERFAMILY SSF82771 16 98 3.92E-18 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 Gene3D G3DSA:1.10.150.20 538 600 1.3E-19 T 14-10-2018 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 Hamap MF_00203 UvrABC system protein C [uvrC]. 3 599 28.614 T 14-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 Gene3D G3DSA:3.30.420.340 374 534 1.3E-51 T 14-10-2018 IPR038476 UvrC homology region 2 superfamily Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 10 580 1.8E-183 T 14-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 Pfam PF12826 Helix-hairpin-helix motif 552 603 9.2E-9 T 14-10-2018 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 Gene3D G3DSA:3.40.1440.10 5 100 7.1E-31 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 SMART SM00465 16 96 3.9E-17 T 14-10-2018 IPR000305 GIY-YIG endonuclease Thimo_2617 ab3e99c7c925635faf1bfe40dcff340a 606 SUPERFAMILY SSF46600 189 241 1.2E-11 T 14-10-2018 IPR036876 UVR domain superfamily Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Gene3D G3DSA:1.10.601.10 12 119 2.5E-27 T 14-10-2018 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Gene3D G3DSA:1.20.140.160 129 279 3.9E-16 T 14-10-2018 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 11 277 4.6E-119 T 14-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Pfam PF04545 Sigma-70, region 4 224 274 4.9E-16 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PRINTS PR00046 Major sigma-70 factor signature 74 87 4.2E-18 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PRINTS PR00046 Major sigma-70 factor signature 228 240 4.2E-18 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PRINTS PR00046 Major sigma-70 factor signature 247 262 4.2E-18 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 PRINTS PR00046 Major sigma-70 factor signature 262 273 4.2E-18 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 74 87 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 45 277 6.9E-33 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 SUPERFAMILY SSF88946 9 119 9.55E-39 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 247 273 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Pfam PF04542 Sigma-70 region 2 50 119 2.1E-16 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 SUPERFAMILY SSF88659 188 277 1.16E-18 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_3619 83ecdf4e0f3b0673f4bfaba0635b4de3 279 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 1 279 48.599 T 14-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_1216 70e4c85ed78db89e601e371250c6c133 139 Pfam PF01230 HIT domain 24 114 7.6E-21 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Thimo_1216 70e4c85ed78db89e601e371250c6c133 139 SUPERFAMILY SSF54197 14 122 3.54E-36 T 14-10-2018 IPR036265 HIT-like superfamily Thimo_1216 70e4c85ed78db89e601e371250c6c133 139 Gene3D G3DSA:3.30.428.10 2 136 3.2E-38 T 14-10-2018 IPR036265 HIT-like superfamily Thimo_1216 70e4c85ed78db89e601e371250c6c133 139 PRINTS PR00332 Histidine triad family signature 33 51 8.1E-6 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Thimo_1216 70e4c85ed78db89e601e371250c6c133 139 PRINTS PR00332 Histidine triad family signature 100 110 8.1E-6 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Thimo_1216 70e4c85ed78db89e601e371250c6c133 139 ProSitePatterns PS00892 HIT domain signature. 93 111 - T 14-10-2018 IPR019808 Histidine triad, conserved site Thimo_1571 0ecedb4b212680015a49672b02319b8c 377 Gene3D G3DSA:3.40.50.180 1 190 4.4E-57 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_1571 0ecedb4b212680015a49672b02319b8c 377 PIRSF PIRSF036461 1 335 1.1E-84 T 14-10-2018 IPR011247 Chemotaxis protein-glutamate methylesterase Thimo_1571 0ecedb4b212680015a49672b02319b8c 377 Pfam PF01339 CheB methylesterase 5 179 3.5E-50 T 14-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Thimo_1571 0ecedb4b212680015a49672b02319b8c 377 SUPERFAMILY SSF52738 2 185 4.84E-53 T 14-10-2018 IPR035909 Methylesterase CheB, C-terminal Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 Gene3D G3DSA:3.60.20.10 6 190 7.0E-57 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 Pfam PF13537 Glutamine amidotransferase domain 47 167 4.3E-43 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 SUPERFAMILY SSF52402 233 566 7.72E-72 T 14-10-2018 Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 PIRSF PIRSF001589 1 591 5.6E-210 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 589 0.0 T 14-10-2018 IPR017535 Asparagine synthase family amidotransferase Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 520 7.0E-125 T 14-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 Pfam PF00733 Asparagine synthase 248 587 2.2E-82 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 Gene3D G3DSA:3.40.50.620 232 587 7.9E-65 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1801 f622b7cd98e167e427ec9cc764be3144 591 SUPERFAMILY SSF56235 1 224 8.58E-59 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_3600 8d1ef5cd456fb004fa4d7916d6708fbe 408 Gene3D G3DSA:2.40.160.10 90 333 6.9E-6 T 14-10-2018 IPR023614 Porin domain superfamily Thimo_3600 8d1ef5cd456fb004fa4d7916d6708fbe 408 SUPERFAMILY SSF56935 90 406 5.86E-12 T 14-10-2018 Thimo_1151 86a750b4dce1c772a951a29a4590ad28 204 Gene3D G3DSA:3.40.50.1110 34 202 4.5E-43 T 14-10-2018 IPR036514 SGNH hydrolase superfamily Thimo_1151 86a750b4dce1c772a951a29a4590ad28 204 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 38 189 5.2E-24 T 14-10-2018 IPR013830 SGNH hydrolase-type esterase domain Thimo_1151 86a750b4dce1c772a951a29a4590ad28 204 SUPERFAMILY SSF52266 35 199 1.68E-37 T 14-10-2018 Thimo_1920 a739dad5e6664b5f7344bf6eec351158 356 Gene3D G3DSA:3.30.465.10 53 170 2.1E-34 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_1920 a739dad5e6664b5f7344bf6eec351158 356 Gene3D G3DSA:1.10.45.10 321 352 1.2E-6 T 14-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Thimo_1920 a739dad5e6664b5f7344bf6eec351158 356 Pfam PF02913 FAD linked oxidases, C-terminal domain 327 351 5.4E-6 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Thimo_1920 a739dad5e6664b5f7344bf6eec351158 356 SUPERFAMILY SSF55103 182 355 3.92E-22 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Thimo_1920 a739dad5e6664b5f7344bf6eec351158 356 SUPERFAMILY SSF56176 9 172 1.12E-28 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Thimo_1920 a739dad5e6664b5f7344bf6eec351158 356 Pfam PF01565 FAD binding domain 9 134 2.6E-19 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Thimo_2991 5337cf0b1616a56170613d8a163ad08d 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.6E-10 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2991 5337cf0b1616a56170613d8a163ad08d 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2991 5337cf0b1616a56170613d8a163ad08d 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2991 5337cf0b1616a56170613d8a163ad08d 47 Gene3D G3DSA:1.20.5.250 1 47 8.0E-19 T 14-10-2018 Thimo_2991 5337cf0b1616a56170613d8a163ad08d 47 SUPERFAMILY SSF56918 4 47 1.41E-12 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 14 441 65.202 T 14-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 Gene3D G3DSA:3.40.50.150 84 435 7.9E-103 T 14-10-2018 Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 371 401 - T 14-10-2018 IPR030390 RNA methyltransferase TrmA, active site Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 423 433 - T 14-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 264 341 1.7E-9 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 365 440 6.4E-7 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 SUPERFAMILY SSF50249 7 63 1.37E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 SUPERFAMILY SSF53335 71 440 3.49E-79 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 Gene3D G3DSA:3.40.1350.30 131 272 7.9E-103 T 14-10-2018 Thimo_1616 57d8de045d1bad57344d33ce73d1646d 444 Gene3D G3DSA:2.40.50.140 1 83 3.0E-28 T 14-10-2018 Thimo_2064 4f615bc201a70561bf9c1f92d945493c 464 PIRSF PIRSF004548 1 464 3.2E-132 T 14-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD Thimo_2064 4f615bc201a70561bf9c1f92d945493c 464 Pfam PF06123 Inner membrane protein CreD 5 457 1.7E-145 T 14-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD Thimo_2975 b73a17d28e9b07b8c1c913b6d50630de 417 Pfam PF07690 Major Facilitator Superfamily 26 355 1.8E-33 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Thimo_2975 b73a17d28e9b07b8c1c913b6d50630de 417 SUPERFAMILY SSF103473 17 395 1.05E-57 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_2975 b73a17d28e9b07b8c1c913b6d50630de 417 Gene3D G3DSA:1.20.1250.20 11 398 1.6E-79 T 14-10-2018 Thimo_1339 4cc2dd3ae42ccce0652f49fe9e345d99 249 SUPERFAMILY SSF46626 23 233 5.72E-25 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1339 4cc2dd3ae42ccce0652f49fe9e345d99 249 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 79 215 8.7E-67 T 14-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Thimo_1339 4cc2dd3ae42ccce0652f49fe9e345d99 249 Gene3D G3DSA:1.10.760.10 81 242 2.9E-67 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1339 4cc2dd3ae42ccce0652f49fe9e345d99 249 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 81 215 4.1E-70 T 14-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Thimo_2349 af8815d8ee6bc534a3defe4557fd6bfe 250 Pfam PF01066 CDP-alcohol phosphatidyltransferase 17 80 3.1E-13 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Thimo_2349 af8815d8ee6bc534a3defe4557fd6bfe 250 Gene3D G3DSA:1.20.120.1760 4 153 5.6E-15 T 14-10-2018 Thimo_2349 af8815d8ee6bc534a3defe4557fd6bfe 250 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 24 186 8.1E-34 T 14-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 Thimo_2349 af8815d8ee6bc534a3defe4557fd6bfe 250 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 58 80 - T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Thimo_0656 50298d10a4121317cca1ce8b75e5c7d6 365 Pfam PF09375 Imelysin 60 338 7.8E-39 T 14-10-2018 IPR018976 Imelysin-like domain Thimo_0656 50298d10a4121317cca1ce8b75e5c7d6 365 Gene3D G3DSA:1.20.1420.20 27 357 4.5E-51 T 14-10-2018 IPR038352 Imelysin-like domain superfamily Thimo_3013 677c4d0fc2daa9cb0694493cce2e9cfe 299 Pfam PF12697 Alpha/beta hydrolase family 41 282 2.5E-22 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3013 677c4d0fc2daa9cb0694493cce2e9cfe 299 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 13 286 2.5E-92 T 14-10-2018 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3013 677c4d0fc2daa9cb0694493cce2e9cfe 299 Gene3D G3DSA:3.40.50.1820 3 289 2.6E-77 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3013 677c4d0fc2daa9cb0694493cce2e9cfe 299 SUPERFAMILY SSF53474 14 286 5.08E-53 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3013 677c4d0fc2daa9cb0694493cce2e9cfe 299 PRINTS PR00412 Epoxide hydrolase signature 45 63 6.7E-6 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_3013 677c4d0fc2daa9cb0694493cce2e9cfe 299 PRINTS PR00412 Epoxide hydrolase signature 109 122 6.7E-6 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_3013 677c4d0fc2daa9cb0694493cce2e9cfe 299 PRINTS PR00412 Epoxide hydrolase signature 265 287 6.7E-6 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_1128 502630b39ce3de2164a414869eacf7af 319 Pfam PF04055 Radical SAM superfamily 36 204 3.5E-15 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_1128 502630b39ce3de2164a414869eacf7af 319 SUPERFAMILY SSF102114 12 266 5.36E-48 T 14-10-2018 Thimo_1128 502630b39ce3de2164a414869eacf7af 319 Gene3D G3DSA:3.80.30.20 41 239 4.1E-16 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_1128 502630b39ce3de2164a414869eacf7af 319 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 303 2.1E-112 T 14-10-2018 IPR005911 Protein YhcC-like GO:0051536 Thimo_1128 502630b39ce3de2164a414869eacf7af 319 Pfam PF16199 Radical_SAM C-terminal domain 212 294 2.5E-24 T 14-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 Thimo_1128 502630b39ce3de2164a414869eacf7af 319 SMART SM00729 23 250 7.3E-44 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_1999 9c291e1a0f326466c84f48632bd0eed8 89 Pfam PF03776 Septum formation topological specificity factor MinE 15 82 3.1E-24 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Thimo_1999 9c291e1a0f326466c84f48632bd0eed8 89 SUPERFAMILY SSF55229 34 83 3.4E-13 T 14-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 Thimo_1999 9c291e1a0f326466c84f48632bd0eed8 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 1.4E-27 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Thimo_1999 9c291e1a0f326466c84f48632bd0eed8 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 88 17.877 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Thimo_1999 9c291e1a0f326466c84f48632bd0eed8 89 Gene3D G3DSA:3.30.1070.10 1 83 1.2E-26 T 14-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 Thimo_2918 7df7e6fc772003f35882b25acaf6641d 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 140 153 5.2E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_2918 7df7e6fc772003f35882b25acaf6641d 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 254 268 5.2E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_2918 7df7e6fc772003f35882b25acaf6641d 339 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 107 5.2E-8 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_2918 7df7e6fc772003f35882b25acaf6641d 339 Gene3D G3DSA:3.40.50.1820 40 316 1.3E-51 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2918 7df7e6fc772003f35882b25acaf6641d 339 PIRSF PIRSF037442 35 325 8.9E-38 T 14-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 Thimo_2918 7df7e6fc772003f35882b25acaf6641d 339 SUPERFAMILY SSF53474 46 315 2.24E-39 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2918 7df7e6fc772003f35882b25acaf6641d 339 Pfam PF12146 Serine aminopeptidase, S33 63 298 1.3E-55 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 164.76 T 14-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 Gene3D G3DSA:3.40.50.20 8 115 5.4E-115 T 14-10-2018 Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 SUPERFAMILY SSF56059 124 312 7.95E-54 T 14-10-2018 Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 TIGRFAM TIGR01380 glut_syn: glutathione synthase 5 310 3.3E-135 T 14-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 5 121 2.8E-46 T 14-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 Gene3D G3DSA:3.30.1490.20 138 202 5.4E-115 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 SUPERFAMILY SSF52440 5 123 2.3E-45 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 6.9E-74 T 14-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Thimo_2550 dccf7156eaa02128a5e81a1058cb80a4 319 Gene3D G3DSA:3.30.470.20 116 296 5.4E-115 T 14-10-2018 Thimo_0132 262214f9bde35a12661e0c92edbe4694 130 Gene3D G3DSA:3.40.30.10 9 124 4.2E-28 T 14-10-2018 Thimo_0132 262214f9bde35a12661e0c92edbe4694 130 PRINTS PR00421 Thioredoxin family signature 86 97 3.8E-7 T 14-10-2018 Thimo_0132 262214f9bde35a12661e0c92edbe4694 130 PRINTS PR00421 Thioredoxin family signature 36 44 3.8E-7 T 14-10-2018 Thimo_0132 262214f9bde35a12661e0c92edbe4694 130 PRINTS PR00421 Thioredoxin family signature 44 53 3.8E-7 T 14-10-2018 Thimo_0132 262214f9bde35a12661e0c92edbe4694 130 PIRSF PIRSF000077 12 122 2.4E-25 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Thimo_0132 262214f9bde35a12661e0c92edbe4694 130 ProSitePatterns PS00194 Thioredoxin family active site. 37 55 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Thimo_0132 262214f9bde35a12661e0c92edbe4694 130 SUPERFAMILY SSF52833 15 124 3.41E-30 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0132 262214f9bde35a12661e0c92edbe4694 130 Pfam PF00085 Thioredoxin 19 121 7.9E-23 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 18 448 1.7E-180 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 SUPERFAMILY SSF53633 17 299 1.14E-66 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 Gene3D G3DSA:3.40.630.30 300 448 1.3E-40 T 14-10-2018 Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 SUPERFAMILY SSF55729 304 425 3.26E-21 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 448 205.124 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 Pfam PF00696 Amino acid kinase family 36 274 1.1E-26 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 PIRSF PIRSF000423 9 448 3.7E-186 T 14-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 Pfam PF00583 Acetyltransferase (GNAT) family 334 409 8.2E-11 T 14-10-2018 IPR000182 GNAT domain Thimo_2192 32e24cd463ab95989cb2783dd46ed255 448 Gene3D G3DSA:3.40.1160.10 16 299 5.1E-89 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 16 506 1.3E-182 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 20 203 1.3E-60 T 14-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 Gene3D G3DSA:3.30.360.10 192 506 6.5E-118 T 14-10-2018 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 PIRSF PIRSF000110 4 508 3.9E-168 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 SUPERFAMILY SSF51735 12 206 5.51E-60 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 16 506 79.447 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 205 505 1.5E-109 T 14-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 183 211 4.8E-46 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 253 269 4.8E-46 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 345 371 4.8E-46 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 235 252 4.8E-46 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 159 172 4.8E-46 T 14-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 Gene3D G3DSA:3.40.50.720 13 191 3.4E-55 T 14-10-2018 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 SUPERFAMILY SSF55347 193 505 6.54E-107 T 14-10-2018 Thimo_3038 ac3898761a365c77b5cc55b7ee4073ba 519 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 193 199 - T 14-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Thimo_1226 7492a22f20a573bf33bedf7864f7a948 239 Pfam PF00171 Aldehyde dehydrogenase family 24 213 1.1E-12 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Thimo_1226 7492a22f20a573bf33bedf7864f7a948 239 Gene3D G3DSA:3.40.605.10 1 222 2.2E-20 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Thimo_1226 7492a22f20a573bf33bedf7864f7a948 239 SUPERFAMILY SSF53720 2 214 8.25E-19 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Thimo_1257 aa79723e0daa6c4521d023f178dc8740 184 Gene3D G3DSA:3.90.870.10 2 183 3.4E-54 T 14-10-2018 Thimo_1257 aa79723e0daa6c4521d023f178dc8740 184 Pfam PF01300 Telomere recombination 12 183 1.6E-40 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 Thimo_1257 aa79723e0daa6c4521d023f178dc8740 184 SUPERFAMILY SSF55821 4 183 4.58E-50 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Thimo_1257 aa79723e0daa6c4521d023f178dc8740 184 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 3 183 37.831 T 14-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 Thimo_1610 0a48b9d610c62a75efd2a1ea08b1d0d3 119 SUPERFAMILY SSF69754 1 100 4.45E-8 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like Thimo_1610 0a48b9d610c62a75efd2a1ea08b1d0d3 119 Gene3D G3DSA:3.30.160.100 1 98 1.8E-5 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like Thimo_1610 0a48b9d610c62a75efd2a1ea08b1d0d3 119 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 96 4.0E-8 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 SUPERFAMILY SSF52540 310 514 5.58E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 Gene3D G3DSA:3.40.50.300 3 277 1.8E-63 T 14-10-2018 Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 Pfam PF16326 ABC transporter C-terminal domain 558 626 1.1E-22 T 14-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 Pfam PF12848 ABC transporter 222 297 1.0E-10 T 14-10-2018 IPR032781 ABC-transporter extension domain Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 Gene3D G3DSA:1.10.287.380 549 631 1.8E-25 T 14-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 SUPERFAMILY SSF52540 2 237 1.46E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 Gene3D G3DSA:3.40.50.300 279 545 1.8E-66 T 14-10-2018 Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 Pfam PF00005 ABC transporter 19 183 1.4E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 SMART SM00382 28 228 8.4E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 SMART SM00382 342 512 2.2E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2582 c755c2f44daaee8e0ae1484fb380ca79 636 Pfam PF00005 ABC transporter 338 467 6.6E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 37 284 2.4E-88 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 Pfam PF02355 Protein export membrane protein 111 292 7.0E-72 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 SUPERFAMILY SSF82866 76 292 3.66E-41 T 14-10-2018 Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 112 281 2.2E-58 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 9 295 30.568 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 Gene3D G3DSA:1.20.1640.10 102 297 5.2E-12 T 14-10-2018 Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 Pfam PF07549 SecD/SecF GG Motif 32 57 4.2E-9 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 PRINTS PR01755 Bacterial translocase SecF protein signature 152 166 1.5E-33 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 PRINTS PR01755 Bacterial translocase SecF protein signature 200 218 1.5E-33 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 PRINTS PR01755 Bacterial translocase SecF protein signature 36 51 1.5E-33 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Thimo_1063 11580e53bbec995ca9c249945b9e4664 312 PRINTS PR01755 Bacterial translocase SecF protein signature 232 247 1.5E-33 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 SMART SM00981 58 156 1.6E-20 T 14-10-2018 IPR004114 THUMP domain GO:0003723 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 201 212 - T 14-10-2018 IPR000241 Putative RNA methylase domain Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 SUPERFAMILY SSF53335 143 379 3.34E-37 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 Gene3D G3DSA:3.30.2130.30 7 260 6.3E-140 T 14-10-2018 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 310 316 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 Gene3D G3DSA:3.40.50.150 500 717 2.4E-69 T 14-10-2018 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 Pfam PF01170 Putative RNA methylase family UPF0020 164 378 1.1E-43 T 14-10-2018 IPR000241 Putative RNA methylase domain Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 PIRSF PIRSF037618 1 718 7.1E-283 T 14-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 SUPERFAMILY SSF53335 408 714 4.11E-61 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 6 718 32.379 T 14-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 510 675 3.6E-17 T 14-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 Gene3D G3DSA:3.40.50.150 171 376 6.3E-140 T 14-10-2018 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 Gene3D G3DSA:3.30.750.80 405 499 1.2E-34 T 14-10-2018 Thimo_0713 7df70475c8c9a942603d16e6e184c280 718 Pfam PF02926 THUMP domain 39 155 3.2E-12 T 14-10-2018 IPR004114 THUMP domain GO:0003723 Thimo_3456 baed138dd19ecef7f90ba429d9a45983 385 SUPERFAMILY SSF47413 8 69 1.58E-6 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_3456 baed138dd19ecef7f90ba429d9a45983 385 Pfam PF06114 IrrE N-terminal-like domain 185 296 4.1E-15 T 14-10-2018 IPR010359 IrrE N-terminal-like domain Thimo_3456 baed138dd19ecef7f90ba429d9a45983 385 Gene3D G3DSA:3.40.390.50 146 259 2.3E-5 T 14-10-2018 Thimo_1902 925e40731438ca438880de03b45d47ca 540 SUPERFAMILY SSF48208 213 441 3.4E-15 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Thimo_1902 925e40731438ca438880de03b45d47ca 540 Gene3D G3DSA:1.50.10.20 164 491 1.4E-11 T 14-10-2018 Thimo_0092 762437a55fcf61bdc01430ac88445410 154 SUPERFAMILY SSF52833 1 154 5.3E-44 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0092 762437a55fcf61bdc01430ac88445410 154 Pfam PF00578 AhpC/TSA family 5 133 6.7E-31 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Thimo_0092 762437a55fcf61bdc01430ac88445410 154 PIRSF PIRSF000239 1 154 4.4E-23 T 14-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Thimo_0092 762437a55fcf61bdc01430ac88445410 154 Gene3D G3DSA:3.40.30.10 3 153 2.6E-39 T 14-10-2018 Thimo_3736 e72e254ec12dd6c409c9f698a8b1b69f 329 Pfam PF13154 Protein of unknown function (DUF3991) 148 212 3.3E-10 T 14-10-2018 IPR025054 Domain of unknown function DUF3991 Thimo_3736 e72e254ec12dd6c409c9f698a8b1b69f 329 Pfam PF13155 Toprim-like 222 318 4.3E-13 T 14-10-2018 Thimo_0464 b7d634f5fa795e9e0a915b997b2500ef 125 PIRSF PIRSF000178 1 124 4.4E-24 T 14-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0464 b7d634f5fa795e9e0a915b997b2500ef 125 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 1 118 2.1E-25 T 14-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0464 b7d634f5fa795e9e0a915b997b2500ef 125 SUPERFAMILY SSF81343 1 121 2.83E-24 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0464 b7d634f5fa795e9e0a915b997b2500ef 125 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 4 118 8.9E-32 T 14-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_0464 b7d634f5fa795e9e0a915b997b2500ef 125 Gene3D G3DSA:1.20.1300.10 1 124 4.4E-31 T 14-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Thimo_2987 d0a82fd8b8e9f78b1366d0437556838d 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 2.7E-7 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2987 d0a82fd8b8e9f78b1366d0437556838d 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 2.7E-7 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2987 d0a82fd8b8e9f78b1366d0437556838d 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 2.7E-7 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2987 d0a82fd8b8e9f78b1366d0437556838d 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 7.8E-13 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2987 d0a82fd8b8e9f78b1366d0437556838d 64 SUPERFAMILY SSF56918 1 47 6.54E-15 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2987 d0a82fd8b8e9f78b1366d0437556838d 64 Gene3D G3DSA:4.10.220.20 1 55 8.8E-19 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 389 403 - T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 Gene3D G3DSA:3.40.50.300 296 571 4.1E-107 T 14-10-2018 Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 46 151 1.2E-18 T 14-10-2018 IPR007831 General secretory system II, protein E, N-terminal Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 Gene3D G3DSA:3.30.300.160 67 147 5.0E-10 T 14-10-2018 Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 Gene3D G3DSA:3.30.450.90 157 294 6.6E-49 T 14-10-2018 Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 13 570 5.2E-257 T 14-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 SUPERFAMILY SSF52540 180 569 2.65E-100 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 Pfam PF00437 Type II/IV secretion system protein 194 461 4.4E-90 T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_1050 0d39524e20afbf9d83f57a3bfaae0d7e 571 SUPERFAMILY SSF160246 10 145 5.75E-35 T 14-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Thimo_1728 d06d43a62850ba72ee6a5633f7dedc6a 205 Pfam PF09626 Dihaem cytochrome c 65 190 2.2E-32 T 14-10-2018 IPR018588 Dihaem cytochrome c Thimo_3302 5865c04c3193bf6bc24b2366939c41ba 189 SUPERFAMILY SSF140478 26 175 1.96E-43 T 14-10-2018 IPR023353 LemA-like domain superfamily Thimo_3302 5865c04c3193bf6bc24b2366939c41ba 189 Pfam PF04011 LemA family 7 182 2.0E-54 T 14-10-2018 IPR007156 LemA Thimo_3302 5865c04c3193bf6bc24b2366939c41ba 189 Gene3D G3DSA:1.20.1440.20 16 183 7.0E-47 T 14-10-2018 IPR023353 LemA-like domain superfamily Thimo_2459 f1266820213651e035a5a8ecb96eb38d 525 Pfam PF01636 Phosphotransferase enzyme family 115 282 5.3E-7 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase Thimo_2459 f1266820213651e035a5a8ecb96eb38d 525 Pfam PF13671 AAA domain 346 494 4.5E-35 T 14-10-2018 Thimo_2459 f1266820213651e035a5a8ecb96eb38d 525 SUPERFAMILY SSF56112 17 314 3.06E-23 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_2459 f1266820213651e035a5a8ecb96eb38d 525 SUPERFAMILY SSF52540 342 511 2.07E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2459 f1266820213651e035a5a8ecb96eb38d 525 Gene3D G3DSA:3.40.50.300 340 522 4.3E-33 T 14-10-2018 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 Pfam PF13932 GidA associated domain 403 616 2.7E-73 T 14-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 Gene3D G3DSA:3.50.50.60 2 231 3.7E-86 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 Gene3D G3DSA:3.50.50.60 296 458 2.7E-56 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 41.826 T 14-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 SMART SM01228 546 617 2.9E-43 T 14-10-2018 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 SUPERFAMILY SSF51905 6 261 1.35E-47 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 Pfam PF01134 Glucose inhibited division protein A 8 398 1.2E-158 T 14-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 14-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 14-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 5.0E-262 T 14-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 Gene3D G3DSA:1.10.10.1800 459 550 6.2E-22 T 14-10-2018 Thimo_1160 e4629aeeb4929278d3e44c4d354b02d5 624 Gene3D G3DSA:1.10.150.570 570 622 1.5E-23 T 14-10-2018 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Gene3D G3DSA:2.120.10.90 531 840 8.3E-119 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Thimo_1299 a506e447e09cc539262edec1496bd85b 859 SMART SM00434 11 499 2.2E-292 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Gene3D G3DSA:1.10.268.10 370 493 2.6E-229 T 14-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 743 787 3.0E-13 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 738 2.6E-13 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 792 837 1.6E-8 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 3.5E-10 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 9.3E-10 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 585 4.1E-7 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 SUPERFAMILY SSF101904 533 851 6.41E-107 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 5 840 24.363 T 14-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 8.7E-154 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Gene3D G3DSA:3.30.1360.40 236 333 2.6E-229 T 14-10-2018 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 Gene3D G3DSA:3.90.199.10 33 521 2.6E-229 T 14-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 838 0.0 T 14-10-2018 Thimo_1299 a506e447e09cc539262edec1496bd85b 859 SUPERFAMILY SSF56719 30 521 6.93E-184 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Thimo_3624 85b92830dd1443137e40a95d9e2e7af4 448 SUPERFAMILY SSF63411 25 230 1.07E-41 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Thimo_3624 85b92830dd1443137e40a95d9e2e7af4 448 Pfam PF05193 Peptidase M16 inactive domain 192 364 3.4E-29 T 14-10-2018 IPR007863 Peptidase M16, C-terminal Thimo_3624 85b92830dd1443137e40a95d9e2e7af4 448 Gene3D G3DSA:3.30.830.10 251 436 9.7E-47 T 14-10-2018 Thimo_3624 85b92830dd1443137e40a95d9e2e7af4 448 Gene3D G3DSA:3.30.830.10 28 239 4.8E-47 T 14-10-2018 Thimo_3624 85b92830dd1443137e40a95d9e2e7af4 448 SUPERFAMILY SSF63411 257 439 4.94E-43 T 14-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Thimo_3624 85b92830dd1443137e40a95d9e2e7af4 448 Pfam PF00675 Insulinase (Peptidase family M16) 37 151 2.2E-10 T 14-10-2018 IPR011765 Peptidase M16, N-terminal Thimo_1462 230f01f90551d4d4d30904736eab94ed 179 Gene3D G3DSA:3.90.79.10 1 157 4.4E-39 T 14-10-2018 Thimo_1462 230f01f90551d4d4d30904736eab94ed 179 Pfam PF00293 NUDIX domain 7 145 1.2E-19 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_1462 230f01f90551d4d4d30904736eab94ed 179 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Thimo_1462 230f01f90551d4d4d30904736eab94ed 179 SUPERFAMILY SSF55811 4 151 3.66E-25 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_1462 230f01f90551d4d4d30904736eab94ed 179 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 34.988 T 14-10-2018 IPR022927 RNA pyrophosphohydrolase RppH Thimo_0385 7a7de04a5e3a95be4df369d3ca7f38c0 195 Gene3D G3DSA:2.40.440.10 30 195 2.4E-17 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_0385 7a7de04a5e3a95be4df369d3ca7f38c0 195 SUPERFAMILY SSF141523 57 193 4.84E-23 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_0385 7a7de04a5e3a95be4df369d3ca7f38c0 195 Pfam PF03734 L,D-transpeptidase catalytic domain 57 193 2.1E-20 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Thimo_2677 ec5068e07ccf335c25df6d8b9dd4d795 482 SUPERFAMILY SSF103378 15 481 1.57E-149 T 14-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Thimo_2677 ec5068e07ccf335c25df6d8b9dd4d795 482 Gene3D G3DSA:1.10.4100.10 24 460 3.1E-189 T 14-10-2018 Thimo_2677 ec5068e07ccf335c25df6d8b9dd4d795 482 Gene3D G3DSA:3.30.1330.120 287 425 3.1E-189 T 14-10-2018 Thimo_2677 ec5068e07ccf335c25df6d8b9dd4d795 482 Pfam PF03972 MmgE/PrpD family 20 462 4.6E-151 T 14-10-2018 IPR005656 MmgE/PrpD GO:0016829 Thimo_2677 ec5068e07ccf335c25df6d8b9dd4d795 482 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 16 482 3.0E-248 T 14-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 Thimo_0750 aea25639bf32bc454f7d412584be6988 243 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 17 240 2.3E-63 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Thimo_0750 aea25639bf32bc454f7d412584be6988 243 PIRSF PIRSF004848 10 243 3.7E-64 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Thimo_0750 aea25639bf32bc454f7d412584be6988 243 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 20 239 30.379 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Thimo_0750 aea25639bf32bc454f7d412584be6988 243 Pfam PF01168 Alanine racemase, N-terminal domain 22 241 7.6E-30 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_0750 aea25639bf32bc454f7d412584be6988 243 Gene3D G3DSA:3.20.20.10 8 243 2.0E-79 T 14-10-2018 IPR029066 PLP-binding barrel Thimo_0750 aea25639bf32bc454f7d412584be6988 243 SUPERFAMILY SSF51419 15 238 1.03E-72 T 14-10-2018 IPR029066 PLP-binding barrel Thimo_0750 aea25639bf32bc454f7d412584be6988 243 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 90 104 - T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Thimo_0818 78980692888559e2271c7e1927788e7a 138 SUPERFAMILY SSF81301 5 64 1.37E-5 T 14-10-2018 Thimo_0818 78980692888559e2271c7e1927788e7a 138 SUPERFAMILY SSF81593 55 102 1.33E-7 T 14-10-2018 Thimo_0124 1e1ab7d841f955a7c143683b9917b02e 247 Gene3D G3DSA:2.40.30.10 1 96 3.1E-27 T 14-10-2018 Thimo_0124 1e1ab7d841f955a7c143683b9917b02e 247 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 7.4E-14 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Thimo_0124 1e1ab7d841f955a7c143683b9917b02e 247 SUPERFAMILY SSF52343 104 245 4.32E-32 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_0124 1e1ab7d841f955a7c143683b9917b02e 247 SUPERFAMILY SSF63380 3 95 9.5E-22 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Thimo_0124 1e1ab7d841f955a7c143683b9917b02e 247 Gene3D G3DSA:3.40.50.80 97 247 1.1E-36 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_0024 8fe584693e3a2f29f137dacc511fe92d 462 Gene3D G3DSA:3.20.20.370 207 462 1.7E-11 T 14-10-2018 Thimo_0024 8fe584693e3a2f29f137dacc511fe92d 462 SUPERFAMILY SSF88713 245 455 5.72E-10 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Thimo_0293 31a6954f85cc42e6b54b5b49fdd6141c 310 Pfam PF00691 OmpA family 162 260 1.4E-11 T 14-10-2018 IPR006665 OmpA-like domain Thimo_0293 31a6954f85cc42e6b54b5b49fdd6141c 310 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 10 53 5.9E-18 T 14-10-2018 IPR025713 Motility protein B, N-terminal domain Thimo_0293 31a6954f85cc42e6b54b5b49fdd6141c 310 Gene3D G3DSA:3.30.1330.60 115 270 1.0E-39 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_0293 31a6954f85cc42e6b54b5b49fdd6141c 310 SUPERFAMILY SSF103088 149 266 6.8E-23 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_0380 40854b6e40f69d322cf47db2cb01aed7 150 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 24 147 7.5E-55 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Thimo_0380 40854b6e40f69d322cf47db2cb01aed7 150 Gene3D G3DSA:2.170.150.20 5 150 2.0E-58 T 14-10-2018 Thimo_0380 40854b6e40f69d322cf47db2cb01aed7 150 SUPERFAMILY SSF51316 22 147 2.2E-56 T 14-10-2018 IPR011057 Mss4-like superfamily Thimo_0380 40854b6e40f69d322cf47db2cb01aed7 150 Pfam PF01641 SelR domain 28 144 2.8E-50 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Thimo_1389 298dc296213856625842de16a35605c5 238 PIRSF PIRSF000709 1 112 5.5E-4 T 14-10-2018 Thimo_1389 298dc296213856625842de16a35605c5 238 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 141 210 6.6E-5 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_1389 298dc296213856625842de16a35605c5 238 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 124 1.4E-28 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_1389 298dc296213856625842de16a35605c5 238 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 4 234 8.8E-106 T 14-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 Thimo_1389 298dc296213856625842de16a35605c5 238 SMART SM00855 4 190 2.4E-23 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_1389 298dc296213856625842de16a35605c5 238 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 2 229 43.824 T 14-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 Thimo_1389 298dc296213856625842de16a35605c5 238 SUPERFAMILY SSF53254 1 229 4.53E-71 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_1389 298dc296213856625842de16a35605c5 238 Gene3D G3DSA:3.40.50.1240 1 232 4.7E-83 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 Pfam PF00549 CoA-ligase 156 269 3.3E-16 T 14-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 295 1.9E-127 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 SMART SM00881 4 103 1.0E-29 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 PIRSF PIRSF001553 1 295 1.5E-116 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 295 40.381 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 PRINTS PR01798 Succinyl-CoA synthase signature 182 200 6.3E-36 T 14-10-2018 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 PRINTS PR01798 Succinyl-CoA synthase signature 247 264 6.3E-36 T 14-10-2018 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 PRINTS PR01798 Succinyl-CoA synthase signature 213 226 6.3E-36 T 14-10-2018 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 PRINTS PR01798 Succinyl-CoA synthase signature 85 102 6.3E-36 T 14-10-2018 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 Gene3D G3DSA:3.40.50.261 129 295 5.0E-68 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 Gene3D G3DSA:3.40.50.720 2 128 7.1E-43 T 14-10-2018 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 Pfam PF02629 CoA binding domain 6 102 4.6E-24 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 SUPERFAMILY SSF51735 1 127 4.64E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 SUPERFAMILY SSF52210 128 293 1.44E-52 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 243 256 - T 14-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site Thimo_0242 7005c04470b4308b5b55add5f7e6b4aa 295 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 157 186 - T 14-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site Thimo_3753 4920aa67c7d8938b669bc64e09ea8980 782 SUPERFAMILY SSF52540 387 711 1.78E-39 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3753 4920aa67c7d8938b669bc64e09ea8980 782 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 9 774 1.9E-206 T 14-10-2018 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 Thimo_3753 4920aa67c7d8938b669bc64e09ea8980 782 Gene3D G3DSA:3.40.50.300 561 749 9.4E-20 T 14-10-2018 Thimo_3753 4920aa67c7d8938b669bc64e09ea8980 782 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 174 376 9.0E-35 T 14-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 Thimo_1349 443cf6047597d1cc818081831f0d1e4b 159 Gene3D G3DSA:3.90.280.10 1 156 1.3E-51 T 14-10-2018 IPR036610 PEBP-like superfamily Thimo_1349 443cf6047597d1cc818081831f0d1e4b 159 SUPERFAMILY SSF49777 2 148 1.83E-45 T 14-10-2018 IPR036610 PEBP-like superfamily Thimo_1349 443cf6047597d1cc818081831f0d1e4b 159 Pfam PF01161 Phosphatidylethanolamine-binding protein 16 154 3.0E-34 T 14-10-2018 IPR008914 Phosphatidylethanolamine-binding protein Thimo_1349 443cf6047597d1cc818081831f0d1e4b 159 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 21 153 1.2E-34 T 14-10-2018 IPR005247 YbhB/YbcL Thimo_1430 1b89ab829fb4192ad6e3174930b2d8d3 399 Pfam PF02687 FtsX-like permease family 304 392 4.1E-11 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_1430 1b89ab829fb4192ad6e3174930b2d8d3 399 Pfam PF12704 MacB-like periplasmic core domain 21 241 1.1E-29 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SUPERFAMILY SSF55666 173 264 3.32E-28 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 31 723 30.437 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Gene3D G3DSA:3.30.1370.10 580 651 1.1E-20 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Gene3D G3DSA:3.30.230.70 261 579 1.5E-113 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Pfam PF03725 3' exoribonuclease family, domain 2 175 239 1.4E-9 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 38 722 0.0 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SUPERFAMILY SSF46915 268 350 1.67E-17 T 14-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Pfam PF01138 3' exoribonuclease family, domain 1 354 486 1.0E-20 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Pfam PF01138 3' exoribonuclease family, domain 1 43 172 2.1E-19 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SUPERFAMILY SSF54211 29 172 1.11E-48 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Pfam PF00013 KH domain 586 643 1.0E-9 T 14-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SUPERFAMILY SSF54791 584 669 4.17E-23 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 PIRSF PIRSF005499 30 728 2.5E-291 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SUPERFAMILY SSF55666 480 579 6.49E-27 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 270 350 5.9E-20 T 14-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SMART SM00322 582 647 8.2E-12 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Gene3D G3DSA:2.40.50.140 652 724 2.0E-30 T 14-10-2018 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Pfam PF00575 S1 RNA binding domain 649 720 2.9E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 Gene3D G3DSA:3.30.230.70 22 259 1.6E-76 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SUPERFAMILY SSF50249 650 725 1.04E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SUPERFAMILY SSF54211 323 518 8.6E-47 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0707 5a2c7426d68bb56975ccb9fb2c6f7dfa 731 SMART SM00316 650 720 2.7E-26 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_3169 1a7e86a70ceb1bd392601de3084ec600 172 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 2 22 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3169 1a7e86a70ceb1bd392601de3084ec600 172 SUPERFAMILY SSF54523 5 152 1.8E-19 T 14-10-2018 Thimo_3169 1a7e86a70ceb1bd392601de3084ec600 172 Pfam PF12019 Type II transport protein GspH 40 162 1.2E-30 T 14-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Thimo_3169 1a7e86a70ceb1bd392601de3084ec600 172 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 2 24 5.3E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3169 1a7e86a70ceb1bd392601de3084ec600 172 Gene3D G3DSA:3.30.700.10 5 147 1.4E-15 T 14-10-2018 Thimo_0919 88212eb2b2cfe971ff8f3066da45438a 269 Pfam PF00194 Eukaryotic-type carbonic anhydrase 46 266 3.3E-29 T 14-10-2018 IPR001148 Alpha carbonic anhydrase domain Thimo_0919 88212eb2b2cfe971ff8f3066da45438a 269 Gene3D G3DSA:3.10.200.10 44 268 5.6E-57 T 14-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily Thimo_0919 88212eb2b2cfe971ff8f3066da45438a 269 SMART SM01057 47 266 6.7E-57 T 14-10-2018 IPR001148 Alpha carbonic anhydrase domain Thimo_0919 88212eb2b2cfe971ff8f3066da45438a 269 SUPERFAMILY SSF51069 46 265 2.75E-55 T 14-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily Thimo_2597 8168b96e8bea0b58c1c40ffa3afcb5fa 369 Pfam PF13808 DDE_Tnp_1-associated 5 91 1.4E-27 T 14-10-2018 IPR032806 H repeat-associated protein, N-terminal Thimo_2597 8168b96e8bea0b58c1c40ffa3afcb5fa 369 Pfam PF01609 Transposase DDE domain 99 338 2.7E-20 T 14-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Thimo_3412 7c0adb922545adc20e239f1668cf2174 141 SUPERFAMILY SSF88723 1 126 1.01E-21 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_3412 7c0adb922545adc20e239f1668cf2174 141 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 5 137 9.987 T 14-10-2018 IPR022907 VapC family GO:0004540 Thimo_3412 7c0adb922545adc20e239f1668cf2174 141 Gene3D G3DSA:3.40.50.1010 4 136 3.8E-13 T 14-10-2018 Thimo_3412 7c0adb922545adc20e239f1668cf2174 141 Pfam PF01850 PIN domain 5 123 1.5E-13 T 14-10-2018 IPR002716 PIN domain Thimo_3409 f3c35b3d28909d98f5c743e8aa2572a0 1029 Pfam PF04851 Type III restriction enzyme, res subunit 163 372 8.6E-13 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Thimo_3409 f3c35b3d28909d98f5c743e8aa2572a0 1029 SUPERFAMILY SSF52540 171 654 9.64E-12 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3409 f3c35b3d28909d98f5c743e8aa2572a0 1029 Gene3D G3DSA:3.40.50.300 447 676 7.7E-10 T 14-10-2018 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 Gene3D G3DSA:3.90.870.10 1 206 2.5E-87 T 14-10-2018 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 SUPERFAMILY SSF55821 2 203 8.47E-85 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 PIRSF PIRSF001259 1 369 5.4E-125 T 14-10-2018 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 37.794 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 SUPERFAMILY SSF142695 204 368 4.45E-45 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 Gene3D G3DSA:3.40.50.10990 320 369 2.2E-5 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 Gene3D G3DSA:3.40.50.10990 207 318 9.2E-22 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 Pfam PF00925 GTP cyclohydrolase II 211 367 2.4E-39 T 14-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 1.3E-82 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0212 d7b3d37105e3ef8615211fa0ced32763 373 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 199 6.5E-70 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0147 925702648681caa39527bdee4bfd5198 102 SUPERFAMILY SSF75169 3 101 1.19E-30 T 14-10-2018 IPR027396 DsrEFH-like Thimo_0147 925702648681caa39527bdee4bfd5198 102 Pfam PF04077 DsrH like protein 9 98 3.8E-30 T 14-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 Thimo_0147 925702648681caa39527bdee4bfd5198 102 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 4 101 6.0E-33 T 14-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 Thimo_0147 925702648681caa39527bdee4bfd5198 102 Gene3D G3DSA:3.40.1260.10 1 102 1.5E-37 T 14-10-2018 IPR027396 DsrEFH-like Thimo_2093 67b1fb3975ebe20e1a74263923e7d988 107 SUPERFAMILY SSF54736 22 106 2.88E-33 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Thimo_2093 67b1fb3975ebe20e1a74263923e7d988 107 Gene3D G3DSA:3.30.1390.10 3 107 7.0E-44 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Thimo_2093 67b1fb3975ebe20e1a74263923e7d988 107 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 25 103 5.4E-35 T 14-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 Thimo_2093 67b1fb3975ebe20e1a74263923e7d988 107 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 5 102 29.155 T 14-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 SUPERFAMILY SSF142984 361 444 3.53E-25 T 14-10-2018 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 SUPERFAMILY SSF140490 447 536 2.48E-35 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 14 81 8.3E-7 T 14-10-2018 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 Gene3D G3DSA:1.20.1440.230 447 544 2.5E-34 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 SUPERFAMILY SSF52833 22 115 5.93E-13 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 Gene3D G3DSA:3.40.50.11540 173 350 2.8E-81 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 SMART SM00928 449 494 1.4E-20 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 168 339 1.1E-49 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 450 533 2.7E-33 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 Pfam PF10531 SLBB domain 363 412 2.3E-8 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 Gene3D G3DSA:3.10.20.600 352 445 4.5E-33 T 14-10-2018 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 Gene3D G3DSA:3.40.30.10 20 120 1.2E-14 T 14-10-2018 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 SUPERFAMILY SSF142019 119 360 4.71E-92 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2351 ff1be83b3540b207e3cab7ec6e14e923 544 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 462 473 - T 14-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0073 d8eeca296c4fd6f7500f737b368189bd 168 Pfam PF16702 Domain of unknown function (DUF5063) 15 163 5.2E-32 T 14-10-2018 IPR032025 Protein of unknown function DUF5063 Thimo_0073 d8eeca296c4fd6f7500f737b368189bd 168 Gene3D G3DSA:1.20.120.1550 6 166 4.2E-20 T 14-10-2018 Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 Pfam PF10135 Rod binding protein 52 96 3.0E-10 T 14-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 Gene3D G3DSA:2.10.70.40 228 280 7.1E-46 T 14-10-2018 Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 200 335 1.1E-20 T 14-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 Gene3D G3DSA:1.10.530.10 194 333 7.1E-46 T 14-10-2018 Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 12 336 5.5E-81 T 14-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 PRINTS PR01002 Flagellar protein FlgJ signature 52 72 4.0E-9 T 14-10-2018 Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 PRINTS PR01002 Flagellar protein FlgJ signature 27 50 4.0E-9 T 14-10-2018 Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 PRINTS PR01002 Flagellar protein FlgJ signature 73 95 4.0E-9 T 14-10-2018 Thimo_3494 7aca880c6e68be7b489ab7ba17cd7b76 344 SMART SM00047 183 343 5.5E-29 T 14-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Thimo_1254 966a1a8ea6bc17cafba9ba63b9342f92 301 ProSitePatterns PS00211 ABC transporters family signature. 180 194 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1254 966a1a8ea6bc17cafba9ba63b9342f92 301 Pfam PF00005 ABC transporter 64 208 1.1E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1254 966a1a8ea6bc17cafba9ba63b9342f92 301 SMART SM00382 71 252 4.8E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1254 966a1a8ea6bc17cafba9ba63b9342f92 301 Gene3D G3DSA:3.40.50.300 36 283 4.6E-68 T 14-10-2018 Thimo_1254 966a1a8ea6bc17cafba9ba63b9342f92 301 SUPERFAMILY SSF52540 46 270 5.43E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0989 1daf7451cb3f32e01628b7d61d3d3dc4 517 Pfam PF13440 Polysaccharide biosynthesis protein 95 347 4.8E-20 T 14-10-2018 Thimo_0989 1daf7451cb3f32e01628b7d61d3d3dc4 517 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 350 482 4.6E-7 T 14-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 SUPERFAMILY SSF53850 92 275 4.7E-61 T 14-10-2018 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 Gene3D G3DSA:3.30.70.260 270 358 4.2E-26 T 14-10-2018 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 Gene3D G3DSA:3.40.190.10 173 257 1.2E-60 T 14-10-2018 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 PIRSF PIRSF001500 1 360 2.3E-139 T 14-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 Pfam PF01817 Chorismate mutase type II 11 89 1.5E-23 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 TIGRFAM TIGR01807 CM_P2: chorismate mutase 7 81 1.1E-27 T 14-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 Pfam PF01842 ACT domain 279 340 3.0E-10 T 14-10-2018 IPR002912 ACT domain Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 Gene3D G3DSA:1.20.59.10 3 91 1.9E-29 T 14-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 Gene3D G3DSA:3.40.190.10 95 265 1.2E-60 T 14-10-2018 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 Pfam PF00800 Prephenate dehydratase 93 268 1.2E-64 T 14-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 SUPERFAMILY SSF48600 6 95 5.8E-21 T 14-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 SMART SM00830 11 91 1.7E-29 T 14-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 243 265 - T 14-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 SUPERFAMILY SSF55021 262 357 1.88E-25 T 14-10-2018 Thimo_1302 80862ec8313ebf9e11c3577e02895841 360 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 305 312 - T 14-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Thimo_1869 39246f6a8d52b1ed867803671176b0f2 366 Gene3D G3DSA:2.40.50.100 67 195 9.9E-74 T 14-10-2018 Thimo_1869 39246f6a8d52b1ed867803671176b0f2 366 Gene3D G3DSA:1.10.287.470 102 161 9.9E-74 T 14-10-2018 Thimo_1869 39246f6a8d52b1ed867803671176b0f2 366 Gene3D G3DSA:2.40.420.20 279 350 9.9E-74 T 14-10-2018 Thimo_1869 39246f6a8d52b1ed867803671176b0f2 366 Gene3D G3DSA:2.40.30.170 56 278 9.9E-74 T 14-10-2018 Thimo_1869 39246f6a8d52b1ed867803671176b0f2 366 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 352 2.0E-77 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1869 39246f6a8d52b1ed867803671176b0f2 366 SUPERFAMILY SSF111369 58 271 4.45E-43 T 14-10-2018 Thimo_1869 39246f6a8d52b1ed867803671176b0f2 366 Pfam PF00529 HlyD membrane-fusion protein of T1SS 20 337 2.0E-6 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1869 39246f6a8d52b1ed867803671176b0f2 366 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 71 268 1.7E-29 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_0677 5f59af6bcfe80df9d4d4adda07b17b17 806 Pfam PF00271 Helicase conserved C-terminal domain 305 408 8.9E-12 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_0677 5f59af6bcfe80df9d4d4adda07b17b17 806 Gene3D G3DSA:3.40.50.300 291 442 5.8E-21 T 14-10-2018 Thimo_0677 5f59af6bcfe80df9d4d4adda07b17b17 806 SUPERFAMILY SSF52540 85 417 1.85E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0677 5f59af6bcfe80df9d4d4adda07b17b17 806 SMART SM00490 322 410 4.0E-13 T 14-10-2018 IPR001650 Helicase, C-terminal Thimo_0677 5f59af6bcfe80df9d4d4adda07b17b17 806 Gene3D G3DSA:3.40.50.300 60 262 7.9E-45 T 14-10-2018 Thimo_0677 5f59af6bcfe80df9d4d4adda07b17b17 806 Pfam PF00270 DEAD/DEAH box helicase 78 246 6.4E-27 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Thimo_0677 5f59af6bcfe80df9d4d4adda07b17b17 806 Pfam PF09369 Domain of unknown function (DUF1998) 728 778 1.7E-10 T 14-10-2018 IPR018973 DEAD/DEAH-box helicase, putative Thimo_0677 5f59af6bcfe80df9d4d4adda07b17b17 806 SMART SM00487 72 276 5.7E-29 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_3724 e250b82447a68871ae04f54a9971ebe3 110 Pfam PF05713 Bacterial mobilisation protein (MobC) 58 102 7.1E-7 T 14-10-2018 IPR008687 Bacterial mobilisation Thimo_0226 a0d0e60866bed32371cea0e85b9f8200 258 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0226 a0d0e60866bed32371cea0e85b9f8200 258 SMART SM00382 39 220 2.3E-19 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0226 a0d0e60866bed32371cea0e85b9f8200 258 Pfam PF00005 ABC transporter 30 170 5.4E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0226 a0d0e60866bed32371cea0e85b9f8200 258 SUPERFAMILY SSF52540 10 246 4.32E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0226 a0d0e60866bed32371cea0e85b9f8200 258 Gene3D G3DSA:3.40.50.300 9 252 2.5E-64 T 14-10-2018 Thimo_1772 384496e00d65a219a5f437e35239f2f1 144 Gene3D G3DSA:1.10.10.60 100 142 3.7E-6 T 14-10-2018 Thimo_1772 384496e00d65a219a5f437e35239f2f1 144 Pfam PF13384 Homeodomain-like domain 109 141 6.7E-6 T 14-10-2018 Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 Pfam PF03719 Ribosomal protein S5, C-terminal domain 89 159 5.1E-29 T 14-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 Gene3D G3DSA:3.30.160.20 5 75 2.7E-30 T 14-10-2018 Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 Gene3D G3DSA:3.30.230.10 76 168 8.1E-35 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 11 165 4.5E-64 T 14-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 Pfam PF00333 Ribosomal protein S5, N-terminal domain 14 76 9.1E-27 T 14-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 165 34.509 T 14-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 ProSitePatterns PS00585 Ribosomal protein S5 signature. 30 62 - T 14-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 SUPERFAMILY SSF54768 10 78 1.26E-22 T 14-10-2018 Thimo_2843 72e9e04efe0e272bcb89213f04cc22fd 168 SUPERFAMILY SSF54211 82 161 3.54E-25 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_1278 9b788e2d6ee0f193d28683a3eafcb69c 997 Gene3D G3DSA:3.40.50.300 291 460 2.2E-6 T 14-10-2018 Thimo_1278 9b788e2d6ee0f193d28683a3eafcb69c 997 SUPERFAMILY SSF52540 51 430 4.42E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1278 9b788e2d6ee0f193d28683a3eafcb69c 997 SUPERFAMILY SSF109604 792 916 1.0E-5 T 14-10-2018 Thimo_1278 9b788e2d6ee0f193d28683a3eafcb69c 997 Gene3D G3DSA:1.10.3210.30 778 994 1.9E-11 T 14-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily Thimo_1278 9b788e2d6ee0f193d28683a3eafcb69c 997 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 793 925 1.0E-13 T 14-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain Thimo_1278 9b788e2d6ee0f193d28683a3eafcb69c 997 Gene3D G3DSA:3.40.50.300 9 264 2.3E-10 T 14-10-2018 Thimo_1278 9b788e2d6ee0f193d28683a3eafcb69c 997 TIGRFAM TIGR02621 cas3_GSU0051: CRISPR-associated helicase Cas3, subtype Dpsyc 9 567 3.2E-99 T 14-10-2018 IPR013444 Helicase Cas3, CRISPR-associated, Anaes-subtype Thimo_3113 add1e7329caadccc73437944c7e303f2 458 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 390 1.7E-9 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 19 454 3.1E-127 T 14-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 SUPERFAMILY SSF51984 17 106 4.32E-18 T 14-10-2018 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 Gene3D G3DSA:3.40.1190.10 106 313 4.4E-64 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 Pfam PF08245 Mur ligase middle domain 122 293 3.4E-25 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 SUPERFAMILY SSF53623 108 311 1.19E-53 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 16 456 35.362 T 14-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 Gene3D G3DSA:3.90.190.20 314 452 3.6E-43 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 SUPERFAMILY SSF53244 313 456 2.01E-46 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3113 add1e7329caadccc73437944c7e303f2 458 Gene3D G3DSA:3.40.50.720 14 105 3.7E-23 T 14-10-2018 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Gene3D G3DSA:2.40.30.130 458 543 3.3E-10 T 14-10-2018 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Gene3D G3DSA:3.30.980.10 555 688 6.3E-50 T 14-10-2018 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Pfam PF02272 DHHA1 domain 725 861 1.2E-27 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Gene3D G3DSA:3.30.930.10 1 242 1.7E-113 T 14-10-2018 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 845 0.0 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 SUPERFAMILY SSF55186 543 702 4.06E-51 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Pfam PF01411 tRNA synthetases class II (A) 6 546 9.6E-223 T 14-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 644 687 5.8E-16 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 866 202.836 T 14-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 SUPERFAMILY SSF55681 3 245 1.81E-108 T 14-10-2018 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 SMART SM00863 644 687 9.5E-20 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 SUPERFAMILY SSF50447 444 543 4.53E-19 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 SUPERFAMILY SSF101353 246 450 2.48E-61 T 14-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Gene3D G3DSA:3.30.54.20 615 668 6.3E-50 T 14-10-2018 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 296 309 3.4E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 3.4E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 3.4E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 3.4E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 PRINTS PR00980 Alanyl-tRNA synthetase signature 272 288 3.4E-33 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Thimo_2428 01c15d178fb1ae79b00758e16beb00f1 867 Gene3D G3DSA:3.10.310.40 754 863 8.9E-36 T 14-10-2018 Thimo_1368 8830dd14aa2c0ffec2437bf2bce6aa5c 184 SUPERFAMILY SSF51161 4 175 1.01E-39 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_1368 8830dd14aa2c0ffec2437bf2bce6aa5c 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 45 4.3E-5 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1368 8830dd14aa2c0ffec2437bf2bce6aa5c 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 95 128 2.1E-5 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1368 8830dd14aa2c0ffec2437bf2bce6aa5c 184 Gene3D G3DSA:2.160.10.10 3 183 4.5E-51 T 14-10-2018 Thimo_0331 2d24e46791761290ad8c5b8563749f55 253 Pfam PF00149 Calcineurin-like phosphoesterase 18 213 7.4E-7 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Thimo_0331 2d24e46791761290ad8c5b8563749f55 253 SUPERFAMILY SSF56300 18 248 9.25E-24 T 14-10-2018 Thimo_0331 2d24e46791761290ad8c5b8563749f55 253 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 253 100.724 T 14-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 Thimo_0331 2d24e46791761290ad8c5b8563749f55 253 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 18 245 1.0E-84 T 14-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 Thimo_2751 235908eea835139639682189b49645e8 104 Gene3D G3DSA:3.30.750.24 12 102 1.3E-14 T 14-10-2018 IPR036513 STAS domain superfamily Thimo_2751 235908eea835139639682189b49645e8 104 Pfam PF13466 STAS domain 15 93 6.2E-17 T 14-10-2018 IPR002645 STAS domain Thimo_2751 235908eea835139639682189b49645e8 104 SUPERFAMILY SSF52091 14 97 1.12E-14 T 14-10-2018 IPR036513 STAS domain superfamily Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 Pfam PF04715 Anthranilate synthase component I, N terminal region 17 156 5.8E-21 T 14-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 105 456 5.2E-115 T 14-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 SUPERFAMILY SSF56322 11 461 2.75E-143 T 14-10-2018 IPR005801 ADC synthase GO:0009058 Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 Pfam PF00425 chorismate binding enzyme 199 452 1.3E-98 T 14-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 Gene3D G3DSA:3.60.120.10 3 462 1.7E-159 T 14-10-2018 IPR005801 ADC synthase GO:0009058 Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PRINTS PR00095 Anthranilate synthase component I signature 314 327 1.9E-18 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PRINTS PR00095 Anthranilate synthase component I signature 409 423 1.9E-18 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PRINTS PR00095 Anthranilate synthase component I signature 394 408 1.9E-18 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_3324 c2f82f14a4b45407e0f1ff12e4e8bfbe 464 PRINTS PR00095 Anthranilate synthase component I signature 300 313 1.9E-18 T 14-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_0315 2f1682da4c6195cf9bac6703e98c468b 158 Pfam PF09701 CRISPR-associated protein (Cas_Cmr5) 35 143 7.0E-11 T 14-10-2018 IPR010160 CRISPR-associated protein, Cmr5 Thimo_0315 2f1682da4c6195cf9bac6703e98c468b 158 TIGRFAM TIGR01881 cas_Cmr5: CRISPR type III-B/RAMP module-associated protein Cmr5 35 143 7.7E-9 T 14-10-2018 IPR010160 CRISPR-associated protein, Cmr5 Thimo_0315 2f1682da4c6195cf9bac6703e98c468b 158 SUPERFAMILY SSF158568 36 143 3.79E-8 T 14-10-2018 IPR023101 AF1862-like domain superfamily Thimo_0315 2f1682da4c6195cf9bac6703e98c468b 158 Gene3D G3DSA:1.10.520.30 33 148 3.1E-8 T 14-10-2018 IPR023101 AF1862-like domain superfamily Thimo_2211 2b505905f65f03d6122909393a251ecc 268 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 3 204 6.4E-20 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Thimo_2211 2b505905f65f03d6122909393a251ecc 268 Gene3D G3DSA:3.40.50.1000 3 262 7.8E-51 T 14-10-2018 IPR023214 HAD superfamily Thimo_2211 2b505905f65f03d6122909393a251ecc 268 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 2 265 3.4E-46 T 14-10-2018 IPR006380 Sucrose-phosphatase-like, N-terminal Thimo_2211 2b505905f65f03d6122909393a251ecc 268 SUPERFAMILY SSF56784 2 226 9.62E-25 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_2211 2b505905f65f03d6122909393a251ecc 268 Gene3D G3DSA:3.90.1070.10 98 172 7.8E-51 T 14-10-2018 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 PIRSF PIRSF002560 1 158 1.4E-64 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 7.5E-53 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 SUPERFAMILY SSF47240 1 156 2.78E-47 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 Pfam PF00210 Ferritin-like domain 9 145 9.8E-38 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 Gene3D G3DSA:1.20.1260.10 1 155 3.3E-63 T 14-10-2018 IPR012347 Ferritin-like Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 86 106 5.1E-51 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 44 64 5.1E-51 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 107 127 5.1E-51 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 23 43 5.1E-51 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 65 85 5.1E-51 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 3 22 5.1E-51 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2049 8a7e54577b9ff2cd93919efde5fe2752 161 PRINTS PR00601 Bacterioferritin signature 129 150 5.1E-51 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2018 9f6663ee1708c78f3b4edd3f2c86b40f 279 Pfam PF04434 SWIM zinc finger 131 152 4.1E-6 T 14-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 Thimo_1286 5bfce8545b8194a1fe43d46e0870ede6 231 Pfam PF13835 Domain of unknown function (DUF4194) 44 203 5.6E-41 T 14-10-2018 IPR025449 Protein of unknown function DUF4194 Thimo_2772 d7f790be8a749a4f1180dce52c5ec626 1249 Pfam PF11965 Domain of unknown function (DUF3479) 15 176 7.5E-49 T 14-10-2018 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_2772 d7f790be8a749a4f1180dce52c5ec626 1249 TIGRFAM TIGR02025 BchH: magnesium chelatase, H subunit 15 777 7.0E-271 T 14-10-2018 IPR011771 Magnesium-chelatase, subunit H GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_2772 d7f790be8a749a4f1180dce52c5ec626 1249 Pfam PF02514 CobN/Magnesium Chelatase 180 1225 0.0 T 14-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 Thimo_3023 d7f790be8a749a4f1180dce52c5ec626 1249 Pfam PF11965 Domain of unknown function (DUF3479) 15 176 7.5E-49 T 14-10-2018 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3023 d7f790be8a749a4f1180dce52c5ec626 1249 TIGRFAM TIGR02025 BchH: magnesium chelatase, H subunit 15 777 7.0E-271 T 14-10-2018 IPR011771 Magnesium-chelatase, subunit H GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3023 d7f790be8a749a4f1180dce52c5ec626 1249 Pfam PF02514 CobN/Magnesium Chelatase 180 1225 0.0 T 14-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 Thimo_2999 fe3a771df4b363cf422e48fce9905360 77 PRINTS PR00673 Light harvesting protein A chain signature 23 42 1.6E-6 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2999 fe3a771df4b363cf422e48fce9905360 77 PRINTS PR00673 Light harvesting protein A chain signature 16 23 1.6E-6 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2999 fe3a771df4b363cf422e48fce9905360 77 PRINTS PR00673 Light harvesting protein A chain signature 42 53 1.6E-6 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2999 fe3a771df4b363cf422e48fce9905360 77 SUPERFAMILY SSF56918 14 57 3.92E-13 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2999 fe3a771df4b363cf422e48fce9905360 77 Pfam PF00556 Antenna complex alpha/beta subunit 14 54 1.9E-13 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2999 fe3a771df4b363cf422e48fce9905360 77 Gene3D G3DSA:4.10.220.20 5 69 2.7E-19 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_1613 9a2a73777f1436eacfa1d51b8ace5fd3 281 Gene3D G3DSA:3.30.1380.10 28 281 3.3E-90 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_1613 9a2a73777f1436eacfa1d51b8ace5fd3 281 PIRSF PIRSF018455 7 281 1.2E-87 T 14-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 Thimo_1613 9a2a73777f1436eacfa1d51b8ace5fd3 281 Pfam PF03411 Penicillin-insensitive murein endopeptidase 44 279 6.1E-92 T 14-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 Thimo_1613 9a2a73777f1436eacfa1d51b8ace5fd3 281 SUPERFAMILY SSF55166 29 280 4.24E-82 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 Gene3D G3DSA:3.40.50.720 1 157 1.1E-54 T 14-10-2018 Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 160 321 1.8E-29 T 14-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 Gene3D G3DSA:3.90.110.10 158 328 2.8E-60 T 14-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 4 321 7.3E-138 T 14-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 2 327 54.958 T 14-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 SUPERFAMILY SSF51735 4 158 1.21E-43 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 6 155 9.6E-34 T 14-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 SUPERFAMILY SSF56327 160 326 3.6E-58 T 14-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Thimo_0239 486491c0102c0e55f6aed0c87d052bae 328 PIRSF PIRSF000102 2 325 4.5E-62 T 14-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 SUPERFAMILY SSF51230 533 607 1.44E-19 T 14-10-2018 IPR011053 Single hybrid motif Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Pfam PF00682 HMGL-like 3 266 9.8E-48 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Pfam PF00364 Biotin-requiring enzyme 542 607 6.0E-15 T 14-10-2018 IPR000089 Biotin/lipoyl attachment Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 SUPERFAMILY SSF89000 296 448 2.04E-51 T 14-10-2018 Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Gene3D G3DSA:2.40.50.100 532 608 2.2E-23 T 14-10-2018 Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 6 604 4.3E-259 T 14-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 SUPERFAMILY SSF51569 2 299 2.75E-89 T 14-10-2018 Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Gene3D G3DSA:3.20.20.70 1 451 5.1E-171 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1968 efe75cd4c3ff0ab10dbd1cebe442c45f 611 Pfam PF02436 Conserved carboxylase domain 291 479 3.6E-57 T 14-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Thimo_1260 7795aa4a58f2ee7c60f7d73923babb5c 321 Gene3D G3DSA:3.60.21.10 100 280 1.0E-21 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Thimo_1260 7795aa4a58f2ee7c60f7d73923babb5c 321 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 101 259 5.8E-11 T 14-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Thimo_1260 7795aa4a58f2ee7c60f7d73923babb5c 321 SUPERFAMILY SSF56300 101 318 4.59E-35 T 14-10-2018 Thimo_1741 d522dec95da00eecad3c2f24f1ce2395 522 SUPERFAMILY SSF56317 232 502 5.23E-54 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_1741 d522dec95da00eecad3c2f24f1ce2395 522 SUPERFAMILY SSF55729 10 194 1.85E-17 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_1741 d522dec95da00eecad3c2f24f1ce2395 522 Gene3D G3DSA:3.40.630.30 4 227 5.8E-52 T 14-10-2018 Thimo_1741 d522dec95da00eecad3c2f24f1ce2395 522 Gene3D G3DSA:3.60.110.10 231 519 6.1E-54 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_1741 d522dec95da00eecad3c2f24f1ce2395 522 Pfam PF00583 Acetyltransferase (GNAT) family 50 143 2.0E-6 T 14-10-2018 IPR000182 GNAT domain Thimo_1741 d522dec95da00eecad3c2f24f1ce2395 522 Pfam PF00795 Carbon-nitrogen hydrolase 236 499 1.9E-27 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Thimo_2705 b595116c2cbe5223ce889e5ca06d463e 110 SUPERFAMILY SSF50022 5 103 1.15E-26 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Thimo_2705 b595116c2cbe5223ce889e5ca06d463e 110 Gene3D G3DSA:2.102.10.10 2 110 5.1E-32 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Thimo_2705 b595116c2cbe5223ce889e5ca06d463e 110 Pfam PF00355 Rieske [2Fe-2S] domain 6 90 2.9E-17 T 14-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Thimo_3066 8df4f14173d99931e2afcd072fce85d8 351 Pfam PF13565 Homeodomain-like domain 29 106 3.3E-13 T 14-10-2018 Thimo_3066 8df4f14173d99931e2afcd072fce85d8 351 SUPERFAMILY SSF53098 135 299 2.28E-40 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_3066 8df4f14173d99931e2afcd072fce85d8 351 Pfam PF00665 Integrase core domain 133 248 7.4E-17 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_3066 8df4f14173d99931e2afcd072fce85d8 351 SUPERFAMILY SSF46689 8 109 1.25E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3066 8df4f14173d99931e2afcd072fce85d8 351 Gene3D G3DSA:3.30.420.10 130 296 5.4E-10 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_0453 12f3420cf9ae475ea23aa6e54e539155 139 PIRSF PIRSF004681 1 138 3.1E-48 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_0453 12f3420cf9ae475ea23aa6e54e539155 139 SUPERFAMILY SSF111038 3 137 1.44E-47 T 14-10-2018 IPR035917 YjbQ-like superfamily Thimo_0453 12f3420cf9ae475ea23aa6e54e539155 139 Pfam PF01894 Uncharacterised protein family UPF0047 18 135 2.5E-39 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_0453 12f3420cf9ae475ea23aa6e54e539155 139 Gene3D G3DSA:2.60.120.460 1 138 2.1E-43 T 14-10-2018 IPR035917 YjbQ-like superfamily Thimo_0453 12f3420cf9ae475ea23aa6e54e539155 139 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 9 137 7.2E-42 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_3361 bb7befa655137c5de16e1d43d7605326 644 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 271 292 1.9E-27 T 14-10-2018 Thimo_3361 bb7befa655137c5de16e1d43d7605326 644 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 126 151 1.9E-27 T 14-10-2018 Thimo_3361 bb7befa655137c5de16e1d43d7605326 644 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 360 372 1.9E-27 T 14-10-2018 Thimo_3361 bb7befa655137c5de16e1d43d7605326 644 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 293 319 1.9E-27 T 14-10-2018 Thimo_3361 bb7befa655137c5de16e1d43d7605326 644 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 121 171 7.8E-9 T 14-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3361 bb7befa655137c5de16e1d43d7605326 644 Pfam PF00361 Proton-conducting membrane transporter 186 457 2.3E-47 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2286 c444a757e11090d7992ef4403b1b584c 197 SUPERFAMILY SSF50022 30 191 3.83E-41 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Thimo_2286 c444a757e11090d7992ef4403b1b584c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 162 174 1.7E-7 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Thimo_2286 c444a757e11090d7992ef4403b1b584c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 118 129 1.7E-7 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Thimo_2286 c444a757e11090d7992ef4403b1b584c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 1.7E-7 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Thimo_2286 c444a757e11090d7992ef4403b1b584c 197 Gene3D G3DSA:2.102.10.10 42 190 3.2E-46 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Thimo_2286 c444a757e11090d7992ef4403b1b584c 197 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 4 39 1.2E-10 T 14-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Thimo_2286 c444a757e11090d7992ef4403b1b584c 197 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 8 190 1.7E-69 T 14-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Thimo_2286 c444a757e11090d7992ef4403b1b584c 197 Pfam PF00355 Rieske [2Fe-2S] domain 108 175 2.0E-11 T 14-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Thimo_0059 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 Gene3D G3DSA:3.60.21.10 13 249 3.4E-17 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Thimo_0059 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 15 228 5.1E-12 T 14-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Thimo_0059 a4601eb371f0e97b2e13cb2ff8ac1bb4 270 SUPERFAMILY SSF56300 12 251 3.14E-31 T 14-10-2018 Thimo_3410 03114304d1fcf84597a5a4601f9de094 79 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 27 60 9.8E-6 T 14-10-2018 IPR019239 Bacterial antitoxin of type II TA system, VapB Thimo_0395 3a654153a572937cd4366023bae1aa71 174 Pfam PF13673 Acetyltransferase (GNAT) domain 42 147 2.1E-10 T 14-10-2018 IPR000182 GNAT domain Thimo_0395 3a654153a572937cd4366023bae1aa71 174 Gene3D G3DSA:3.40.630.30 1 153 5.5E-37 T 14-10-2018 Thimo_0395 3a654153a572937cd4366023bae1aa71 174 SUPERFAMILY SSF55729 22 149 4.96E-16 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_0235 ae3b879fbedcc3337cafee72467bdba9 920 SUPERFAMILY SSF51735 31 157 2.61E-16 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0235 ae3b879fbedcc3337cafee72467bdba9 920 Pfam PF02629 CoA binding domain 58 125 5.5E-6 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Thimo_0235 ae3b879fbedcc3337cafee72467bdba9 920 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 188 294 1.6E-6 T 14-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Thimo_0235 ae3b879fbedcc3337cafee72467bdba9 920 SUPERFAMILY SSF48256 611 904 9.72E-16 T 14-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Thimo_0235 ae3b879fbedcc3337cafee72467bdba9 920 Gene3D G3DSA:3.40.50.720 33 156 3.7E-27 T 14-10-2018 Thimo_0235 ae3b879fbedcc3337cafee72467bdba9 920 SUPERFAMILY SSF52210 160 309 6.28E-21 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0235 ae3b879fbedcc3337cafee72467bdba9 920 Gene3D G3DSA:3.40.50.261 157 339 9.0E-23 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_3427 ddb0a03507368b2f1053c2ed62dffff6 228 SMART SM00448 3 113 1.6E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3427 ddb0a03507368b2f1053c2ed62dffff6 228 Gene3D G3DSA:3.40.50.2300 2 127 1.5E-32 T 14-10-2018 Thimo_3427 ddb0a03507368b2f1053c2ed62dffff6 228 Pfam PF00072 Response regulator receiver domain 5 113 2.2E-22 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3427 ddb0a03507368b2f1053c2ed62dffff6 228 SUPERFAMILY SSF46894 126 223 3.68E-24 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_3427 ddb0a03507368b2f1053c2ed62dffff6 228 Gene3D G3DSA:1.10.10.10 132 226 9.6E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3427 ddb0a03507368b2f1053c2ed62dffff6 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 221 3.6E-21 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3427 ddb0a03507368b2f1053c2ed62dffff6 228 SUPERFAMILY SSF52172 4 122 5.41E-37 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_3427 ddb0a03507368b2f1053c2ed62dffff6 228 SMART SM00862 146 222 4.4E-20 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2569 fc1f339832e367e67c2728c823f894fa 80 Pfam PF01722 BolA-like protein 21 74 4.7E-12 T 14-10-2018 IPR002634 BolA protein Thimo_2569 fc1f339832e367e67c2728c823f894fa 80 SUPERFAMILY SSF82657 1 78 5.1E-22 T 14-10-2018 IPR036065 BolA-like superfamily Thimo_2569 fc1f339832e367e67c2728c823f894fa 80 PIRSF PIRSF003113 1 79 5.6E-18 T 14-10-2018 IPR002634 BolA protein Thimo_2569 fc1f339832e367e67c2728c823f894fa 80 Gene3D G3DSA:3.30.300.90 1 80 2.6E-24 T 14-10-2018 Thimo_0074 16591fc1313c15c1778343c4a09b265d 124 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 11 115 2.4E-21 T 14-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Thimo_0074 16591fc1313c15c1778343c4a09b265d 124 Gene3D G3DSA:2.60.300.12 10 111 7.5E-20 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Thimo_0074 16591fc1313c15c1778343c4a09b265d 124 SUPERFAMILY SSF89360 5 101 1.22E-19 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Thimo_0074 16591fc1313c15c1778343c4a09b265d 124 Pfam PF01521 Iron-sulphur cluster biosynthesis 10 91 1.9E-9 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Thimo_2482 07ebaf34bbf9c5035a75ac938d15d7bf 137 Pfam PF04972 BON domain 67 134 2.1E-14 T 14-10-2018 IPR007055 BON domain Thimo_2482 07ebaf34bbf9c5035a75ac938d15d7bf 137 SMART SM00749 72 135 4.4E-7 T 14-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria Thimo_3432 91a6f3da685c0464b09efbfd27077377 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 280 6.6E-13 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_3432 91a6f3da685c0464b09efbfd27077377 293 Gene3D G3DSA:1.10.3720.10 52 282 4.1E-58 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_3432 91a6f3da685c0464b09efbfd27077377 293 SUPERFAMILY SSF161098 56 275 1.19E-51 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 194 6.1E-80 T 14-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 Gene3D G3DSA:3.40.50.880 1 195 2.6E-60 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 172 185 1.7E-36 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 102 110 1.7E-36 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.7E-36 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.7E-36 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 122 134 1.7E-36 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00097 Anthranilate synthase component II signature 77 88 1.7E-36 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 2.6E-13 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 77 88 2.6E-13 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 172 185 2.6E-13 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 Pfam PF00117 Glutamine amidotransferase class-I 4 193 1.4E-54 T 14-10-2018 IPR017926 Glutamine amidotransferase Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 SUPERFAMILY SSF52317 1 194 7.17E-54 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.1E-5 T 14-10-2018 Thimo_1175 4397024facdbe676f5c291cc7daa8542 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 77 93 1.1E-5 T 14-10-2018 Thimo_1414 1c7b88f9cb5dfc224e6ba7fc4a442696 375 Pfam PF00534 Glycosyl transferases group 1 202 356 5.9E-35 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1414 1c7b88f9cb5dfc224e6ba7fc4a442696 375 Gene3D G3DSA:3.40.50.2000 182 359 6.1E-57 T 14-10-2018 Thimo_1414 1c7b88f9cb5dfc224e6ba7fc4a442696 375 Pfam PF13439 Glycosyltransferase Family 4 21 182 1.4E-12 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1414 1c7b88f9cb5dfc224e6ba7fc4a442696 375 SUPERFAMILY SSF53756 21 371 6.77E-68 T 14-10-2018 Thimo_1414 1c7b88f9cb5dfc224e6ba7fc4a442696 375 Gene3D G3DSA:3.40.50.2000 22 361 6.1E-57 T 14-10-2018 Thimo_1800 0cae36374657c42c7201ecf2ab970a22 212 SUPERFAMILY SSF55620 23 211 1.26E-80 T 14-10-2018 Thimo_1800 0cae36374657c42c7201ecf2ab970a22 212 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 138 148 - T 14-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Thimo_1800 0cae36374657c42c7201ecf2ab970a22 212 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 90 106 - T 14-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Thimo_1800 0cae36374657c42c7201ecf2ab970a22 212 Gene3D G3DSA:1.10.286.10 29 79 5.7E-18 T 14-10-2018 Thimo_1800 0cae36374657c42c7201ecf2ab970a22 212 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 29 211 38.642 T 14-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Thimo_1800 0cae36374657c42c7201ecf2ab970a22 212 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 36 211 2.3E-77 T 14-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Thimo_1800 0cae36374657c42c7201ecf2ab970a22 212 Gene3D G3DSA:3.30.1130.10 81 212 6.9E-63 T 14-10-2018 Thimo_1800 0cae36374657c42c7201ecf2ab970a22 212 Pfam PF01227 GTP cyclohydrolase I 35 210 4.6E-77 T 14-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 Pfam PF00119 ATP synthase A chain 53 273 2.3E-53 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 ProSitePatterns PS00449 ATP synthase a subunit signature. 210 219 - T 14-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 46 274 1.7E-44 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 Gene3D G3DSA:1.20.120.220 102 280 2.6E-55 T 14-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 SUPERFAMILY SSF81336 103 274 1.83E-40 T 14-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 Hamap MF_01393 ATP synthase subunit a [atpB]. 13 280 14.992 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 PRINTS PR00123 ATP synthase A subunit signature 110 126 1.2E-14 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 PRINTS PR00123 ATP synthase A subunit signature 207 229 1.2E-14 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1165 044a9723848e4b1b767bed43c649fd83 281 PRINTS PR00123 ATP synthase A subunit signature 260 275 1.2E-14 T 14-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_0418 04281d6780c1b6c9ad09b9896ee5409b 230 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 13 223 2.2E-53 T 14-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 Thimo_0418 04281d6780c1b6c9ad09b9896ee5409b 230 Gene3D G3DSA:3.40.50.1360 8 228 2.8E-62 T 14-10-2018 Thimo_0418 04281d6780c1b6c9ad09b9896ee5409b 230 SUPERFAMILY SSF100950 7 222 1.17E-55 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Thimo_0418 04281d6780c1b6c9ad09b9896ee5409b 230 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 13 212 2.0E-60 T 14-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 Thimo_1990 4460dae97eeaeee5e80e74c3a0b646c8 578 Pfam PF01420 Type I restriction modification DNA specificity domain 372 547 4.1E-14 T 14-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Thimo_1990 4460dae97eeaeee5e80e74c3a0b646c8 578 SUPERFAMILY SSF116734 370 562 5.4E-31 T 14-10-2018 Thimo_1990 4460dae97eeaeee5e80e74c3a0b646c8 578 Gene3D G3DSA:3.90.220.20 68 276 6.5E-23 T 14-10-2018 Thimo_1990 4460dae97eeaeee5e80e74c3a0b646c8 578 Gene3D G3DSA:3.90.220.20 359 566 5.5E-33 T 14-10-2018 Thimo_1990 4460dae97eeaeee5e80e74c3a0b646c8 578 SUPERFAMILY SSF116734 76 332 1.49E-22 T 14-10-2018 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 Gene3D G3DSA:2.40.50.100 1 102 5.7E-22 T 14-10-2018 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 SUPERFAMILY SSF47005 123 165 1.57E-9 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 SUPERFAMILY SSF51230 1 95 1.16E-24 T 14-10-2018 IPR011053 Single hybrid motif Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 Gene3D G3DSA:3.30.559.10 192 424 2.8E-94 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 Gene3D G3DSA:4.10.320.10 124 166 6.8E-13 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 Pfam PF02817 e3 binding domain 128 160 2.0E-10 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 SUPERFAMILY SSF52777 194 422 1.47E-88 T 14-10-2018 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 194 422 2.6E-81 T 14-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 423 1.3E-168 T 14-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Thimo_0681 882c7d46cc6873d9d7a67010190a383f 424 Pfam PF00364 Biotin-requiring enzyme 4 76 3.3E-18 T 14-10-2018 IPR000089 Biotin/lipoyl attachment Thimo_1516 d523505527aff3fcb5301ca1123c5b77 414 Pfam PF13692 Glycosyl transferases group 1 232 363 2.1E-20 T 14-10-2018 Thimo_1516 d523505527aff3fcb5301ca1123c5b77 414 Gene3D G3DSA:3.40.50.2000 205 379 3.4E-40 T 14-10-2018 Thimo_1516 d523505527aff3fcb5301ca1123c5b77 414 Gene3D G3DSA:3.40.50.2000 52 397 3.4E-40 T 14-10-2018 Thimo_1516 d523505527aff3fcb5301ca1123c5b77 414 Pfam PF13439 Glycosyltransferase Family 4 15 209 2.6E-11 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1516 d523505527aff3fcb5301ca1123c5b77 414 SUPERFAMILY SSF53756 8 398 4.32E-53 T 14-10-2018 Thimo_0991 fb42668c6b5841b8ef3422b27e135d33 232 Pfam PF00685 Sulfotransferase domain 36 211 4.7E-14 T 14-10-2018 IPR000863 Sulfotransferase domain GO:0008146 Thimo_0991 fb42668c6b5841b8ef3422b27e135d33 232 SUPERFAMILY SSF52540 1 223 2.85E-25 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0991 fb42668c6b5841b8ef3422b27e135d33 232 Gene3D G3DSA:3.40.50.300 1 221 1.2E-26 T 14-10-2018 Thimo_1851 e512640743a5ca9a6e3167fb58bb20fd 115 Pfam PF02416 mttA/Hcf106 family 4 34 2.7E-8 T 14-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Thimo_1851 e512640743a5ca9a6e3167fb58bb20fd 115 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 72 8.2E-24 T 14-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 Thimo_1851 e512640743a5ca9a6e3167fb58bb20fd 115 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 114 16.239 T 14-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 Thimo_1851 e512640743a5ca9a6e3167fb58bb20fd 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 3.0E-21 T 14-10-2018 Thimo_1851 e512640743a5ca9a6e3167fb58bb20fd 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 3.0E-21 T 14-10-2018 Thimo_1851 e512640743a5ca9a6e3167fb58bb20fd 115 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 3.0E-21 T 14-10-2018 Thimo_2661 dcdb966ba72fd83a56f9e9c887d3f9cc 455 Gene3D G3DSA:2.60.120.260 254 417 1.3E-7 T 14-10-2018 IPR008979 Galactose-binding-like domain superfamily Thimo_2661 dcdb966ba72fd83a56f9e9c887d3f9cc 455 Gene3D G3DSA:1.25.40.10 29 159 1.3E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2661 dcdb966ba72fd83a56f9e9c887d3f9cc 455 SUPERFAMILY SSF48452 39 144 1.92E-9 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2128 716bfdb37e7e8abd6c9cd60acd5c849d 478 SUPERFAMILY SSF53098 4 472 9.11E-106 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2128 716bfdb37e7e8abd6c9cd60acd5c849d 478 Gene3D G3DSA:3.30.420.10 2 195 6.8E-66 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2128 716bfdb37e7e8abd6c9cd60acd5c849d 478 Pfam PF08411 Exonuclease C-terminal 206 472 3.5E-89 T 14-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 Thimo_2128 716bfdb37e7e8abd6c9cd60acd5c849d 478 Gene3D G3DSA:1.20.1280.70 352 413 6.2E-26 T 14-10-2018 Thimo_2128 716bfdb37e7e8abd6c9cd60acd5c849d 478 PIRSF PIRSF000977 1 476 1.2E-190 T 14-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 Thimo_2128 716bfdb37e7e8abd6c9cd60acd5c849d 478 Gene3D G3DSA:2.30.30.450 209 344 2.2E-40 T 14-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily Thimo_2128 716bfdb37e7e8abd6c9cd60acd5c849d 478 Pfam PF00929 Exonuclease 7 187 7.6E-19 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_3593 271dcd06515a9e546a8fb5b3d1432642 341 Gene3D G3DSA:2.60.120.620 112 338 4.2E-21 T 14-10-2018 Thimo_3593 271dcd06515a9e546a8fb5b3d1432642 341 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 127 322 1.9E-10 T 14-10-2018 IPR008775 Phytanoyl-CoA dioxygenase Thimo_3593 271dcd06515a9e546a8fb5b3d1432642 341 SUPERFAMILY SSF51197 118 336 9.16E-37 T 14-10-2018 Thimo_2542 4ed923400bd1dfa249edb3f017de83f5 167 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 3 146 27.744 T 14-10-2018 IPR026592 Outer membrane protein assembly factor BamE Thimo_2542 4ed923400bd1dfa249edb3f017de83f5 167 Pfam PF04355 SmpA / OmlA family 51 120 8.0E-26 T 14-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 Thimo_2542 4ed923400bd1dfa249edb3f017de83f5 167 Gene3D G3DSA:3.30.1450.10 57 131 9.0E-30 T 14-10-2018 IPR037873 BamE-like Thimo_1883 c7087e7180d7d840255843451f0fc790 156 SMART SM00422 1 69 2.8E-21 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_1883 c7087e7180d7d840255843451f0fc790 156 SUPERFAMILY SSF46955 1 108 4.03E-22 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Thimo_1883 c7087e7180d7d840255843451f0fc790 156 Pfam PF13411 MerR HTH family regulatory protein 1 61 1.2E-16 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_1883 c7087e7180d7d840255843451f0fc790 156 Gene3D G3DSA:1.10.1660.10 1 135 2.9E-26 T 14-10-2018 Thimo_1883 c7087e7180d7d840255843451f0fc790 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.3E-6 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_1883 c7087e7180d7d840255843451f0fc790 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.3E-6 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_1883 c7087e7180d7d840255843451f0fc790 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 1.3E-6 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 9 141 3.0E-51 T 14-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 Pfam PF08334 Type II secretion system (T2SS), protein G 33 140 2.0E-43 T 14-10-2018 IPR013545 Type II secretion system protein G Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 SUPERFAMILY SSF54523 38 141 1.1E-36 T 14-10-2018 Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 PRINTS PR00813 Bacterial general secretion pathway protein G signature 46 64 3.3E-14 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 PRINTS PR00813 Bacterial general secretion pathway protein G signature 10 35 3.3E-14 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 30 6.5E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 30 6.1E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0046 c02d33ccaba68d98f0ebd6f3f1971144 141 Gene3D G3DSA:3.30.700.10 34 140 1.5E-38 T 14-10-2018 Thimo_3157 6bcc38ce3ea006c719d9e5d8bcdcff00 313 Gene3D G3DSA:3.40.50.300 1 228 4.9E-65 T 14-10-2018 Thimo_3157 6bcc38ce3ea006c719d9e5d8bcdcff00 313 SUPERFAMILY SSF52540 2 222 5.99E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3157 6bcc38ce3ea006c719d9e5d8bcdcff00 313 Pfam PF00005 ABC transporter 18 161 7.7E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_3157 6bcc38ce3ea006c719d9e5d8bcdcff00 313 SMART SM00382 26 207 1.3E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0615 9241e53cd213e064d526f7082b139a94 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 220 1.9E-16 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_0615 9241e53cd213e064d526f7082b139a94 225 SUPERFAMILY SSF161098 5 215 1.57E-44 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0615 9241e53cd213e064d526f7082b139a94 225 Gene3D G3DSA:1.10.3720.10 3 222 1.3E-53 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0615 9241e53cd213e064d526f7082b139a94 225 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 9 218 9.1E-74 T 14-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 Thimo_1919 3d4583ad155207f8cfa8f74795f2adf2 498 SUPERFAMILY SSF55103 206 476 1.8E-77 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Thimo_1919 3d4583ad155207f8cfa8f74795f2adf2 498 Pfam PF02913 FAD linked oxidases, C-terminal domain 232 472 9.7E-70 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Thimo_1919 3d4583ad155207f8cfa8f74795f2adf2 498 Gene3D G3DSA:3.30.70.2740 352 433 4.9E-9 T 14-10-2018 Thimo_1919 3d4583ad155207f8cfa8f74795f2adf2 498 SUPERFAMILY SSF56176 21 233 9.35E-72 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Thimo_1919 3d4583ad155207f8cfa8f74795f2adf2 498 Gene3D G3DSA:1.10.45.10 434 474 9.4E-8 T 14-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Thimo_1919 3d4583ad155207f8cfa8f74795f2adf2 498 Pfam PF01565 FAD binding domain 58 196 1.0E-41 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Thimo_1919 3d4583ad155207f8cfa8f74795f2adf2 498 Gene3D G3DSA:3.30.465.40 19 252 2.5E-68 T 14-10-2018 Thimo_3749 c8350c505a2e9599496fdadc1e2442c5 332 Gene3D G3DSA:1.10.10.60 223 331 7.8E-24 T 14-10-2018 Thimo_3749 c8350c505a2e9599496fdadc1e2442c5 332 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 21 201 5.8E-36 T 14-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Thimo_3749 c8350c505a2e9599496fdadc1e2442c5 332 SUPERFAMILY SSF46689 279 328 1.57E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3749 c8350c505a2e9599496fdadc1e2442c5 332 SMART SM00342 244 326 4.2E-22 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_3749 c8350c505a2e9599496fdadc1e2442c5 332 Pfam PF12833 Helix-turn-helix domain 250 327 7.0E-18 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 Pfam PF01029 NusB family 21 141 1.3E-19 T 14-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 266 276 1.2E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 343 355 1.2E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 393 409 1.2E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 237 251 1.2E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 441 458 1.2E-28 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 Gene3D G3DSA:1.10.940.10 17 155 5.1E-37 T 14-10-2018 IPR035926 NusB-like superfamily Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 22 459 3.4E-121 T 14-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 SUPERFAMILY SSF53335 160 458 6.84E-71 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 SUPERFAMILY SSF48013 20 163 1.06E-26 T 14-10-2018 IPR035926 NusB-like superfamily Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 Gene3D G3DSA:3.40.50.150 253 461 3.8E-63 T 14-10-2018 Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 Gene3D G3DSA:3.30.70.1170 188 245 4.5E-20 T 14-10-2018 Thimo_1245 240fe90bbfe85670e69768cf8af76576 461 Pfam PF01189 16S rRNA methyltransferase RsmB/F 256 456 7.4E-58 T 14-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 Thimo_1479 e4fd4287e84b185ac23f764ac1260d91 298 Gene3D G3DSA:1.10.150.130 4 100 1.2E-21 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Thimo_1479 e4fd4287e84b185ac23f764ac1260d91 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 298 1.9E-114 T 14-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Thimo_1479 e4fd4287e84b185ac23f764ac1260d91 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 91 3.1E-20 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Thimo_1479 e4fd4287e84b185ac23f764ac1260d91 298 Pfam PF00589 Phage integrase family 113 283 1.0E-49 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Thimo_1479 e4fd4287e84b185ac23f764ac1260d91 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 298 57.141 T 14-10-2018 IPR023009 Tyrosine recombinase XerC/XerD Thimo_1479 e4fd4287e84b185ac23f764ac1260d91 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 4 298 57.868 T 14-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Thimo_1479 e4fd4287e84b185ac23f764ac1260d91 298 Gene3D G3DSA:1.10.443.10 112 292 1.3E-67 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Thimo_1479 e4fd4287e84b185ac23f764ac1260d91 298 SUPERFAMILY SSF56349 18 289 3.83E-61 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Thimo_0565 c49610e744458aaee74bf0c126c65cc5 432 SUPERFAMILY SSF53098 213 334 5.31E-11 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0565 c49610e744458aaee74bf0c126c65cc5 432 Pfam PF00665 Integrase core domain 223 315 2.5E-7 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_3604 6354f07af79f573bf511b9c0cf002e71 129 PIRSF PIRSF027377 2 123 6.5E-53 T 14-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Thimo_3604 6354f07af79f573bf511b9c0cf002e71 129 Pfam PF14489 QueF-like protein 40 118 9.7E-32 T 14-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Thimo_3604 6354f07af79f573bf511b9c0cf002e71 129 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 129 49.519 T 14-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Thimo_3604 6354f07af79f573bf511b9c0cf002e71 129 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 7 116 2.4E-51 T 14-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Thimo_3604 6354f07af79f573bf511b9c0cf002e71 129 Gene3D G3DSA:3.30.1130.10 4 123 5.3E-44 T 14-10-2018 Thimo_3604 6354f07af79f573bf511b9c0cf002e71 129 SUPERFAMILY SSF55620 4 109 4.15E-26 T 14-10-2018 Thimo_0608 1f18434ea9545540f5d8e3a73db5a0cb 306 SUPERFAMILY SSF81606 19 274 3.01E-11 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_0608 1f18434ea9545540f5d8e3a73db5a0cb 306 Pfam PF13672 Protein phosphatase 2C 17 259 3.4E-43 T 14-10-2018 Thimo_0608 1f18434ea9545540f5d8e3a73db5a0cb 306 Gene3D G3DSA:3.60.40.10 14 276 5.8E-11 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_2201 094004e969332dfdef2ffd6bf27e0672 91 SUPERFAMILY SSF143011 4 85 1.44E-18 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_2201 094004e969332dfdef2ffd6bf27e0672 91 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 6 86 8.7E-19 T 14-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 Thimo_2201 094004e969332dfdef2ffd6bf27e0672 91 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 6 86 1.4E-21 T 14-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 Thimo_2201 094004e969332dfdef2ffd6bf27e0672 91 Gene3D G3DSA:3.30.2310.20 1 86 4.1E-26 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_0014 45d97dea31e84694990653af0860417d 642 SUPERFAMILY SSF48452 505 608 4.05E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2382 5113287664fed0b99d46c0c7f08c31e7 319 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 185 2.8E-31 T 14-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Thimo_2382 5113287664fed0b99d46c0c7f08c31e7 319 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 319 71.397 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Thimo_2382 5113287664fed0b99d46c0c7f08c31e7 319 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 230 319 2.5E-36 T 14-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Thimo_2382 5113287664fed0b99d46c0c7f08c31e7 319 Gene3D G3DSA:3.40.47.10 2 319 3.8E-130 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_2382 5113287664fed0b99d46c0c7f08c31e7 319 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 318 1.6E-130 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Thimo_2382 5113287664fed0b99d46c0c7f08c31e7 319 SUPERFAMILY SSF53901 5 319 1.2E-71 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Thimo_2119 6bb1bc1463fcb9ff5e1d398eec62dc12 247 TIGRFAM TIGR02206 intg_mem_TP0381: conserved hypothetical integral membrane protein TIGR02206 6 225 3.9E-52 T 14-10-2018 IPR011737 Conserved hypothetical protein CHP02206, TP0381 Thimo_2119 6bb1bc1463fcb9ff5e1d398eec62dc12 247 Pfam PF09529 Integral membrane protein (intg_mem_TP0381) 9 221 3.4E-49 T 14-10-2018 IPR011737 Conserved hypothetical protein CHP02206, TP0381 Thimo_0868 49398faecb6d81703ec369110c9dd085 323 SUPERFAMILY SSF55781 215 309 1.2E-8 T 14-10-2018 Thimo_0868 49398faecb6d81703ec369110c9dd085 323 Pfam PF01590 GAF domain 162 297 1.9E-5 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_0868 49398faecb6d81703ec369110c9dd085 323 SMART SM00065 132 307 0.0067 T 14-10-2018 IPR003018 GAF domain GO:0005515 Thimo_0868 49398faecb6d81703ec369110c9dd085 323 Gene3D G3DSA:3.30.450.40 157 309 1.3E-7 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_0219 f3eca6923798132794ce90710dec6617 433 Gene3D G3DSA:1.10.287.130 162 278 9.4E-18 T 14-10-2018 Thimo_0219 f3eca6923798132794ce90710dec6617 433 SMART SM00387 324 429 8.7E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0219 f3eca6923798132794ce90710dec6617 433 SMART SM00388 212 278 3.5E-10 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0219 f3eca6923798132794ce90710dec6617 433 Gene3D G3DSA:3.30.565.10 284 427 4.0E-22 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0219 f3eca6923798132794ce90710dec6617 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 277 7.1E-10 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0219 f3eca6923798132794ce90710dec6617 433 SUPERFAMILY SSF55874 283 425 4.85E-24 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0219 f3eca6923798132794ce90710dec6617 433 SUPERFAMILY SSF47384 195 275 3.53E-12 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_0219 f3eca6923798132794ce90710dec6617 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 423 5.2E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0626 660cdb539d616f4693709ea6c5e144db 371 Pfam PF03734 L,D-transpeptidase catalytic domain 80 217 1.3E-19 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Thimo_0626 660cdb539d616f4693709ea6c5e144db 371 Gene3D G3DSA:2.40.440.10 29 289 4.2E-29 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_0626 660cdb539d616f4693709ea6c5e144db 371 SUPERFAMILY SSF141523 80 217 5.23E-25 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_3465 3fe266c2b953e56c5365cb66e8d87bdc 683 Pfam PF03477 ATP cone domain 14 103 2.1E-19 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Thimo_3465 3fe266c2b953e56c5365cb66e8d87bdc 683 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 133 664 3.2E-175 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Thimo_3465 3fe266c2b953e56c5365cb66e8d87bdc 683 SUPERFAMILY SSF51998 133 666 3.66E-159 T 14-10-2018 Thimo_3465 3fe266c2b953e56c5365cb66e8d87bdc 683 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 132 667 3.0E-140 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Thimo_3465 3fe266c2b953e56c5365cb66e8d87bdc 683 Gene3D G3DSA:3.20.70.20 146 675 9.4E-111 T 14-10-2018 Thimo_0346 74f1f0ac7f982650a501a8f843f90a54 309 Gene3D G3DSA:3.40.50.10330 1 130 1.3E-25 T 14-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Thimo_0346 74f1f0ac7f982650a501a8f843f90a54 309 SMART SM00046 3 133 6.7E-9 T 14-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Thimo_0346 74f1f0ac7f982650a501a8f843f90a54 309 SUPERFAMILY SSF111331 1 302 1.57E-55 T 14-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Thimo_0346 74f1f0ac7f982650a501a8f843f90a54 309 Gene3D G3DSA:2.60.200.40 131 293 2.0E-21 T 14-10-2018 Thimo_0346 74f1f0ac7f982650a501a8f843f90a54 309 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 130 1.1E-23 T 14-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Thimo_2203 41b94ffa13f9d7e83ad97d68f3ceef78 376 Gene3D G3DSA:1.10.600.10 36 362 2.1E-56 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_2203 41b94ffa13f9d7e83ad97d68f3ceef78 376 SUPERFAMILY SSF48576 38 357 5.47E-38 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_0187 d190416693806889f564ea438a51e41d 518 Pfam PF01808 AICARFT/IMPCHase bienzyme 134 449 3.9E-116 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0187 d190416693806889f564ea438a51e41d 518 SUPERFAMILY SSF53927 210 518 4.11E-126 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Thimo_0187 d190416693806889f564ea438a51e41d 518 SUPERFAMILY SSF52335 4 194 5.23E-66 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Thimo_0187 d190416693806889f564ea438a51e41d 518 Gene3D G3DSA:3.40.140.20 208 363 9.9E-58 T 14-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0187 d190416693806889f564ea438a51e41d 518 SMART SM00798 134 450 2.9E-198 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0187 d190416693806889f564ea438a51e41d 518 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 4 518 44.86 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0187 d190416693806889f564ea438a51e41d 518 Gene3D G3DSA:3.40.50.1380 1 198 1.2E-82 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Thimo_0187 d190416693806889f564ea438a51e41d 518 Pfam PF02142 MGS-like domain 16 129 3.2E-26 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain Thimo_0187 d190416693806889f564ea438a51e41d 518 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5 518 9.2E-232 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0187 d190416693806889f564ea438a51e41d 518 SMART SM00851 16 129 1.3E-55 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain Thimo_0187 d190416693806889f564ea438a51e41d 518 Gene3D G3DSA:3.40.140.20 382 518 9.1E-58 T 14-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0187 d190416693806889f564ea438a51e41d 518 PIRSF PIRSF000414 1 518 7.3E-217 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_2193 2967978663c119b956c9a3dacac22136 85 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 81 5.6E-8 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Thimo_2193 2967978663c119b956c9a3dacac22136 85 SUPERFAMILY SSF143011 1 82 6.41E-18 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_2193 2967978663c119b956c9a3dacac22136 85 Gene3D G3DSA:3.30.2310.20 2 85 8.7E-15 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_2300 26779333b5941bdf95f2ba21a332be15 81 Gene3D G3DSA:1.10.1220.10 9 66 3.9E-8 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Thimo_2300 26779333b5941bdf95f2ba21a332be15 81 SUPERFAMILY SSF47598 4 60 1.41E-11 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Thimo_2300 26779333b5941bdf95f2ba21a332be15 81 Pfam PF03869 Arc-like DNA binding domain 10 46 4.8E-6 T 14-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 Thimo_0708 8ad4d10beea20f0119776cadf9f35835 1160 Pfam PF00924 Mechanosensitive ion channel 926 1125 2.8E-55 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Thimo_0708 8ad4d10beea20f0119776cadf9f35835 1160 SUPERFAMILY SSF50182 969 1034 1.63E-17 T 14-10-2018 IPR010920 LSM domain superfamily Thimo_0708 8ad4d10beea20f0119776cadf9f35835 1160 Gene3D G3DSA:3.30.70.100 1036 1129 7.9E-23 T 14-10-2018 Thimo_0708 8ad4d10beea20f0119776cadf9f35835 1160 SUPERFAMILY SSF82689 1038 1134 1.7E-26 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Thimo_0708 8ad4d10beea20f0119776cadf9f35835 1160 Gene3D G3DSA:2.30.30.60 984 1033 1.1E-11 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Thimo_0708 8ad4d10beea20f0119776cadf9f35835 1160 Pfam PF12795 Mechanosensitive ion channel porin domain 69 304 3.7E-50 T 14-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain Thimo_0708 8ad4d10beea20f0119776cadf9f35835 1160 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 528 865 5.4E-99 T 14-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 Thimo_0708 8ad4d10beea20f0119776cadf9f35835 1160 SUPERFAMILY SSF82861 884 967 3.79E-7 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 934 21.432 T 14-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 Gene3D G3DSA:3.40.50.620 25 635 4.5E-237 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 SUPERFAMILY SSF52374 3 653 2.69E-139 T 14-10-2018 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 241 264 5.5E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 533 546 5.5E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 567 576 5.5E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 5.5E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 407 422 5.5E-33 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 Pfam PF08264 Anticodon-binding domain of tRNA 691 846 2.7E-24 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 SUPERFAMILY SSF47323 658 934 2.8E-73 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 Gene3D G3DSA:3.90.740.10 195 414 4.5E-237 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 Gene3D G3DSA:1.10.730.20 646 934 9.0E-87 T 14-10-2018 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 848 6.4E-280 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 Pfam PF06827 Zinc finger found in FPG and IleRS 905 931 2.8E-7 T 14-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 SUPERFAMILY SSF50677 204 409 2.09E-54 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Thimo_1139 e4c066f6b1a4fa437b424d5266b2a9f4 943 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 646 1.5E-207 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_1432 92955daf77d93136d6c978b0cd0c7158 232 SUPERFAMILY SSF52540 1 229 8.96E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1432 92955daf77d93136d6c978b0cd0c7158 232 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1432 92955daf77d93136d6c978b0cd0c7158 232 SMART SM00382 30 217 6.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1432 92955daf77d93136d6c978b0cd0c7158 232 Gene3D G3DSA:3.40.50.300 1 231 2.5E-64 T 14-10-2018 Thimo_1432 92955daf77d93136d6c978b0cd0c7158 232 Pfam PF00005 ABC transporter 21 169 9.7E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0943 254132e1a59d33e53b3ac10cb15bf302 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 291 7.6E-11 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_0943 254132e1a59d33e53b3ac10cb15bf302 306 Gene3D G3DSA:1.10.3720.10 18 304 6.7E-57 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0943 254132e1a59d33e53b3ac10cb15bf302 306 SUPERFAMILY SSF161098 14 298 8.97E-56 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1670 4cfdab83351e623aa8a28f0aa0516e76 146 Gene3D G3DSA:1.10.10.60 5 88 7.9E-6 T 14-10-2018 Thimo_1670 4cfdab83351e623aa8a28f0aa0516e76 146 Pfam PF01527 Transposase 60 110 5.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_1670 4cfdab83351e623aa8a28f0aa0516e76 146 Pfam PF01527 Transposase 2 55 5.8E-10 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_1670 4cfdab83351e623aa8a28f0aa0516e76 146 SUPERFAMILY SSF46689 2 67 2.69E-10 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 274 363 9.6E-17 T 14-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 29 253 4.0E-83 T 14-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 SMART SM00936 274 364 1.4E-27 T 14-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 Gene3D G3DSA:2.60.410.10 274 364 3.0E-25 T 14-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 Gene3D G3DSA:3.40.710.10 23 273 7.1E-92 T 14-10-2018 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 SUPERFAMILY SSF56601 8 274 1.05E-86 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 1.7E-16 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 1.7E-16 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 61 72 1.7E-16 T 14-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Thimo_2777 4a217680dabb06b11af2f8a46a0be56d 381 SUPERFAMILY SSF69189 266 362 1.96E-20 T 14-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_2341 2cba7bccf46b6ba4f3f420786a60b3d4 292 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 82 1.6E-25 T 14-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal Thimo_2341 2cba7bccf46b6ba4f3f420786a60b3d4 292 SUPERFAMILY SSF54001 7 274 1.22E-41 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Thimo_2341 2cba7bccf46b6ba4f3f420786a60b3d4 292 SMART SM00460 176 246 1.3E-18 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_2341 2cba7bccf46b6ba4f3f420786a60b3d4 292 Gene3D G3DSA:3.10.620.30 94 280 3.1E-47 T 14-10-2018 Thimo_2341 2cba7bccf46b6ba4f3f420786a60b3d4 292 Pfam PF01841 Transglutaminase-like superfamily 144 244 1.0E-19 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_1964 b8bc42927a45699a5bbec6130cfa2469 213 SUPERFAMILY SSF56281 2 208 3.41E-57 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_1964 b8bc42927a45699a5bbec6130cfa2469 213 SMART SM00849 12 192 1.2E-38 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_1964 b8bc42927a45699a5bbec6130cfa2469 213 Gene3D G3DSA:3.60.15.10 2 209 2.0E-78 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_1964 b8bc42927a45699a5bbec6130cfa2469 213 Pfam PF00753 Metallo-beta-lactamase superfamily 11 192 1.7E-29 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_1874 c736d4ec8f780470b11e78ad23e1ec6a 206 Pfam PF01292 Prokaryotic cytochrome b561 7 198 4.7E-23 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_1874 c736d4ec8f780470b11e78ad23e1ec6a 206 Gene3D G3DSA:1.20.950.20 7 205 2.0E-17 T 14-10-2018 Thimo_1874 c736d4ec8f780470b11e78ad23e1ec6a 206 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 161 183 1.2E-6 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_1874 c736d4ec8f780470b11e78ad23e1ec6a 206 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 9 32 1.2E-6 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_1874 c736d4ec8f780470b11e78ad23e1ec6a 206 SUPERFAMILY SSF81342 2 203 4.47E-25 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_1077 20a62211091e0a24d472fc7469b613ed 142 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 84 1.8E-26 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Thimo_1077 20a62211091e0a24d472fc7469b613ed 142 Gene3D G3DSA:3.10.50.40 3 142 9.4E-53 T 14-10-2018 Thimo_1077 20a62211091e0a24d472fc7469b613ed 142 SUPERFAMILY SSF54534 4 141 7.86E-44 T 14-10-2018 Thimo_3721 5150470019d33924c0c5406e25b135ce 338 PIRSF PIRSF037112 1 305 7.5E-84 T 14-10-2018 IPR017113 Antirestriction, ArdC Thimo_3721 5150470019d33924c0c5406e25b135ce 338 Pfam PF08401 Domain of unknown function (DUF1738) 10 119 8.5E-34 T 14-10-2018 IPR013610 Domain of unknown function DUF1738 Thimo_0687 4c820003c16637d732362bd369357483 447 Pfam PF02342 TerD domain 1 169 8.2E-32 T 14-10-2018 IPR003325 TerD domain Thimo_0687 4c820003c16637d732362bd369357483 447 Pfam PF01987 Mitochondrial biogenesis AIM24 226 432 2.3E-56 T 14-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Thimo_0687 4c820003c16637d732362bd369357483 447 Gene3D G3DSA:2.60.60.30 17 168 4.7E-33 T 14-10-2018 Thimo_0687 4c820003c16637d732362bd369357483 447 SUPERFAMILY SSF51219 224 446 8.63E-62 T 14-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily Thimo_0687 4c820003c16637d732362bd369357483 447 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 224 446 3.0E-52 T 14-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 Thimo_0687 4c820003c16637d732362bd369357483 447 Gene3D G3DSA:3.60.160.10 215 447 3.0E-69 T 14-10-2018 IPR036983 Mitochondrial biogenesis AIM24 superfamily Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 Gene3D G3DSA:3.30.572.10 1 279 6.2E-119 T 14-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 Pfam PF00303 Thymidylate synthase 2 279 3.6E-111 T 14-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 86 1.2E-34 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 85 279 6.0E-84 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 PRINTS PR00108 Thymidylate synthase family signature 210 227 4.5E-39 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 PRINTS PR00108 Thymidylate synthase family signature 42 63 4.5E-39 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 PRINTS PR00108 Thymidylate synthase family signature 154 169 4.5E-39 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 PRINTS PR00108 Thymidylate synthase family signature 172 198 4.5E-39 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 SUPERFAMILY SSF55831 1 279 1.23E-113 T 14-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_3375 1fccfd544a1a84f2fca06a3f572b87bb 279 Hamap MF_00008 Thymidylate synthase [thyA]. 1 279 38.071 T 14-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Thimo_2961 6d0c383088074f4eab1954a0cfc44f65 155 Gene3D G3DSA:3.40.630.30 3 132 1.9E-18 T 14-10-2018 Thimo_2961 6d0c383088074f4eab1954a0cfc44f65 155 Pfam PF13302 Acetyltransferase (GNAT) domain 4 113 7.4E-15 T 14-10-2018 IPR000182 GNAT domain Thimo_2961 6d0c383088074f4eab1954a0cfc44f65 155 SUPERFAMILY SSF55729 4 115 6.67E-19 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_3168 8518f48ceae0495a18ca696a6df34498 161 Pfam PF07963 Prokaryotic N-terminal methylation motif 10 35 2.3E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3168 8518f48ceae0495a18ca696a6df34498 161 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 13 144 1.2E-26 T 14-10-2018 IPR013362 Pilus modification type IV, PilV Thimo_3168 8518f48ceae0495a18ca696a6df34498 161 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 35 3.8E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_2160 25350422a6a59e961a5eb64e4e7cd23c 585 Pfam PF01740 STAS domain 450 557 3.9E-10 T 14-10-2018 IPR002645 STAS domain Thimo_2160 25350422a6a59e961a5eb64e4e7cd23c 585 Gene3D G3DSA:3.30.750.24 443 569 5.3E-20 T 14-10-2018 IPR036513 STAS domain superfamily Thimo_2160 25350422a6a59e961a5eb64e4e7cd23c 585 Pfam PF00916 Sulfate permease family 28 399 1.2E-92 T 14-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Thimo_2160 25350422a6a59e961a5eb64e4e7cd23c 585 SUPERFAMILY SSF52091 449 562 2.94E-13 T 14-10-2018 IPR036513 STAS domain superfamily Thimo_2160 25350422a6a59e961a5eb64e4e7cd23c 585 TIGRFAM TIGR00815 sulP: sulfate permease 14 557 2.7E-116 T 14-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Thimo_2942 e717a0a9f945001b3fb7df1be12c184a 274 Gene3D G3DSA:3.40.430.10 22 274 8.0E-39 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Thimo_2942 e717a0a9f945001b3fb7df1be12c184a 274 SUPERFAMILY SSF53597 36 251 5.77E-27 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Thimo_2942 e717a0a9f945001b3fb7df1be12c184a 274 Pfam PF01872 RibD C-terminal domain 37 233 1.0E-12 T 14-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Thimo_1756 9df322c16d13632635df2ac0aa0aa16c 231 Gene3D G3DSA:2.60.40.10 20 120 9.2E-13 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1756 9df322c16d13632635df2ac0aa0aa16c 231 Pfam PF07610 Protein of unknown function (DUF1573) 29 112 4.6E-12 T 14-10-2018 IPR011467 Protein of unknown function DUF1573 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 624 1.4E-195 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 499 517 2.0E-38 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 235 252 2.0E-38 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 37 48 2.0E-38 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 368 381 2.0E-38 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 PRINTS PR00986 Valyl-tRNA synthetase signature 468 489 2.0E-38 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF50677 192 362 1.57E-49 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:1.10.730.10 572 812 1.0E-71 T 14-10-2018 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 55 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF52374 3 634 1.65E-132 T 14-10-2018 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:1.10.287.380 872 944 5.3E-19 T 14-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Pfam PF08264 Anticodon-binding domain of tRNA 667 820 3.2E-43 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:3.40.50.620 3 206 6.0E-63 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:3.90.740.10 209 351 2.3E-25 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Hamap MF_02004 Valine--tRNA ligase [valS]. 2 944 15.855 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 879 943 1.8E-16 T 14-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 Gene3D G3DSA:3.40.50.620 352 570 1.7E-63 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF47323 635 893 9.72E-72 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 SUPERFAMILY SSF46589 879 943 4.76E-15 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Thimo_3328 811fdd99c8d1b2c4d6d4d8bdd1ea9936 946 TIGRFAM TIGR00422 valS: valine--tRNA ligase 3 926 0.0 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 1.0E-41 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 SUPERFAMILY SSF50249 3 123 1.03E-50 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 PIRSF PIRSF002133 1 124 2.5E-53 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.4E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.4E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.4E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.4E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.4E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.4E-60 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 4.3E-69 T 14-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 Gene3D G3DSA:2.40.50.140 1 124 8.4E-62 T 14-10-2018 Thimo_2865 3316964909b4dd525478cd4f490fec5e 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.058 T 14-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0690 7fdbd698660ce81ff30f59c8120b31c1 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_0690 7fdbd698660ce81ff30f59c8120b31c1 345 SUPERFAMILY SSF52540 5 335 8.33E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0690 7fdbd698660ce81ff30f59c8120b31c1 345 Gene3D G3DSA:3.30.450.90 1 100 2.6E-34 T 14-10-2018 Thimo_0690 7fdbd698660ce81ff30f59c8120b31c1 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 7.6E-151 T 14-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 Thimo_0690 7fdbd698660ce81ff30f59c8120b31c1 345 SMART SM00382 122 256 4.0E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0690 7fdbd698660ce81ff30f59c8120b31c1 345 Gene3D G3DSA:3.40.50.300 101 345 6.3E-106 T 14-10-2018 Thimo_0690 7fdbd698660ce81ff30f59c8120b31c1 345 Pfam PF00437 Type II/IV secretion system protein 12 268 8.6E-45 T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_3299 b7ed798002472cbb7cd15685dc79b301 175 ProSitePatterns PS00893 Nudix box signature. 74 95 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Thimo_3299 b7ed798002472cbb7cd15685dc79b301 175 SUPERFAMILY SSF55811 8 172 2.84E-50 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_3299 b7ed798002472cbb7cd15685dc79b301 175 PRINTS PR00502 NUDIX hydrolase family signature 69 83 1.6E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Thimo_3299 b7ed798002472cbb7cd15685dc79b301 175 PRINTS PR00502 NUDIX hydrolase family signature 83 98 1.6E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Thimo_3299 b7ed798002472cbb7cd15685dc79b301 175 Gene3D G3DSA:3.90.79.10 4 175 8.1E-58 T 14-10-2018 Thimo_3299 b7ed798002472cbb7cd15685dc79b301 175 Pfam PF00293 NUDIX domain 42 149 2.4E-21 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_0893 79a081302c22fced34ef4fec1e5fccf8 316 SUPERFAMILY SSF52833 153 257 4.11E-9 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0893 79a081302c22fced34ef4fec1e5fccf8 316 TIGRFAM TIGR02740 TraF-like: TraF-like protein 24 267 1.0E-80 T 14-10-2018 IPR014111 Type IV conjugative transfer system protein TraF-like Thimo_0893 79a081302c22fced34ef4fec1e5fccf8 316 Pfam PF13728 F plasmid transfer operon protein 31 257 3.0E-78 T 14-10-2018 IPR039555 F plasmid transfer operon protein Thimo_0841 3a1284afa9673d96fa0a70421b421d60 289 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 255 2.1E-16 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_0841 3a1284afa9673d96fa0a70421b421d60 289 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0841 3a1284afa9673d96fa0a70421b421d60 289 Gene3D G3DSA:3.30.70.20 63 113 6.8E-10 T 14-10-2018 Thimo_0841 3a1284afa9673d96fa0a70421b421d60 289 SUPERFAMILY SSF54862 55 118 7.27E-15 T 14-10-2018 Thimo_0841 3a1284afa9673d96fa0a70421b421d60 289 Pfam PF00037 4Fe-4S binding domain 93 114 3.8E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0841 3a1284afa9673d96fa0a70421b421d60 289 SUPERFAMILY SSF52540 1 262 2.72E-30 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2809 e4fd7c11d7f48cd55f191a00c40cc5fc 250 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 152 229 5.1E-7 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2809 e4fd7c11d7f48cd55f191a00c40cc5fc 250 Gene3D G3DSA:1.10.760.10 59 142 6.6E-16 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2809 e4fd7c11d7f48cd55f191a00c40cc5fc 250 SUPERFAMILY SSF46626 59 141 1.39E-15 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2809 e4fd7c11d7f48cd55f191a00c40cc5fc 250 SUPERFAMILY SSF46626 150 232 1.72E-15 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2809 e4fd7c11d7f48cd55f191a00c40cc5fc 250 Pfam PF00034 Cytochrome c 63 139 1.2E-8 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2809 e4fd7c11d7f48cd55f191a00c40cc5fc 250 Gene3D G3DSA:1.10.760.10 146 231 1.2E-17 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0042 ca55ae50d610baf2503a3cfe5871f2e6 307 Pfam PF01297 Zinc-uptake complex component A periplasmic 27 303 4.9E-62 T 14-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Thimo_0042 ca55ae50d610baf2503a3cfe5871f2e6 307 Gene3D G3DSA:3.40.50.1980 23 202 1.9E-46 T 14-10-2018 Thimo_0042 ca55ae50d610baf2503a3cfe5871f2e6 307 Gene3D G3DSA:3.40.50.1980 204 306 8.7E-35 T 14-10-2018 Thimo_0042 ca55ae50d610baf2503a3cfe5871f2e6 307 SUPERFAMILY SSF53807 24 304 6.87E-80 T 14-10-2018 Thimo_0908 0a12a189ba79c5a79b826588872f7f83 722 Gene3D G3DSA:3.40.50.300 390 578 1.6E-16 T 14-10-2018 Thimo_0908 0a12a189ba79c5a79b826588872f7f83 722 SUPERFAMILY SSF52540 371 550 7.48E-15 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0908 0a12a189ba79c5a79b826588872f7f83 722 Pfam PF07728 AAA domain (dynein-related subfamily) 408 505 2.7E-6 T 14-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 17 392 1.2E-124 T 14-10-2018 IPR017687 Outer membrane protein assembly factor BamB Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 Pfam PF13360 PQQ-like domain 332 393 1.4E-5 T 14-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 Pfam PF13360 PQQ-like domain 90 321 4.8E-52 T 14-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 11 394 36.371 T 14-10-2018 IPR017687 Outer membrane protein assembly factor BamB Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 Gene3D G3DSA:2.130.10.10 37 396 2.0E-100 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 77 108 1.1 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 253 284 1.6E-6 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 332 363 0.36 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 117 148 0.12 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 291 322 0.022 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 SMART SM00564 156 188 0.022 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Thimo_1888 4304368f2b0eff6d27d4099ad2979fe6 429 SUPERFAMILY SSF50998 43 385 2.04E-77 T 14-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Thimo_1279 157e646f94d97e0676f44e78c10a2329 550 Pfam PF09609 CRISPR-associated protein, GSU0054 family (Cas_GSU0054) 6 212 1.3E-8 T 14-10-2018 IPR019089 CRISPR-associated protein, GSU0054 Thimo_1279 157e646f94d97e0676f44e78c10a2329 550 TIGRFAM TIGR02165 cas5_6_GSU0054: CRISPR-associated protein GSU0054/csb2, Dpsyc system 1 542 1.4E-90 T 14-10-2018 IPR019089 CRISPR-associated protein, GSU0054 Thimo_0123 3a42b685872d176c0deb642ea3e72ef6 188 Pfam PF00255 Glutathione peroxidase 43 134 1.2E-32 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Thimo_0123 3a42b685872d176c0deb642ea3e72ef6 188 PIRSF PIRSF000303 2 186 8.2E-55 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Thimo_0123 3a42b685872d176c0deb642ea3e72ef6 188 Gene3D G3DSA:3.40.30.10 25 186 1.7E-50 T 14-10-2018 Thimo_0123 3a42b685872d176c0deb642ea3e72ef6 188 SUPERFAMILY SSF52833 25 180 2.21E-50 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0123 3a42b685872d176c0deb642ea3e72ef6 188 PRINTS PR01011 Glutathione peroxidase family signature 81 97 1.3E-16 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Thimo_0123 3a42b685872d176c0deb642ea3e72ef6 188 PRINTS PR01011 Glutathione peroxidase family signature 142 151 1.3E-16 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Thimo_0123 3a42b685872d176c0deb642ea3e72ef6 188 PRINTS PR01011 Glutathione peroxidase family signature 46 63 1.3E-16 T 14-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 Thimo_0123 3a42b685872d176c0deb642ea3e72ef6 188 ProSitePatterns PS00460 Glutathione peroxidases active site. 48 63 - T 14-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 PRINTS PR00297 10kDa chaperonin signature 81 94 2.9E-34 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 PRINTS PR00297 10kDa chaperonin signature 3 18 2.9E-34 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 PRINTS PR00297 10kDa chaperonin signature 25 46 2.9E-34 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 PRINTS PR00297 10kDa chaperonin signature 60 72 2.9E-34 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 28.324 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 SUPERFAMILY SSF50129 1 95 7.65E-37 T 14-10-2018 IPR011032 GroES-like superfamily Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 SMART SM00883 2 94 5.4E-61 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 Gene3D G3DSA:2.30.33.40 1 96 2.4E-39 T 14-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 14-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 Thimo_0176 6d96a8a2affd274a9bfc9efd228cebfd 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 8.7E-37 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF109736 156 221 8.11E-21 T 14-10-2018 Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF82697 1 152 2.2E-45 T 14-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF55326 624 818 3.66E-64 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:3.90.650.10 825 984 3.9E-33 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:3.90.650.10 421 607 4.2E-54 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:3.40.50.880 985 1297 7.4E-134 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF56042 830 1036 9.57E-56 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF52317 1041 1296 2.89E-95 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF55326 222 428 4.45E-60 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SMART SM01211 1043 1296 1.3E-152 T 14-10-2018 Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1297 20.998 T 14-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 SUPERFAMILY SSF56042 433 656 5.23E-50 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1043 1296 3.7E-104 T 14-10-2018 Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Pfam PF02769 AIR synthase related protein, C-terminal domain 434 589 8.6E-29 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Pfam PF02769 AIR synthase related protein, C-terminal domain 840 969 8.4E-15 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:3.30.1330.10 622 810 6.9E-23 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:1.10.8.750 154 214 1.7E-25 T 14-10-2018 Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 Gene3D G3DSA:3.30.1330.10 215 420 1.6E-40 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_2452 c8d9ef102e7f1d59f5422d170fe8ec8e 1297 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1296 0.0 T 14-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 210 218 - T 14-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 Gene3D G3DSA:1.10.3260.10 1 183 1.3E-38 T 14-10-2018 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily GO:0003677|GO:0003910|GO:0006281|GO:0006310 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 Gene3D G3DSA:2.40.50.140 382 513 2.0E-34 T 14-10-2018 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 TIGRFAM TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1) 51 508 3.4E-87 T 14-10-2018 IPR000977 DNA ligase, ATP-dependent GO:0003910|GO:0005524|GO:0006281|GO:0006310|GO:0071897 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 Pfam PF04675 DNA ligase N terminus 70 140 1.1E-6 T 14-10-2018 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 SUPERFAMILY SSF50249 384 510 4.11E-32 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 Pfam PF04679 ATP dependent DNA ligase C terminal region 400 492 3.2E-12 T 14-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 Gene3D G3DSA:3.30.470.30 185 381 7.9E-56 T 14-10-2018 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 SUPERFAMILY SSF56091 182 381 9.11E-49 T 14-10-2018 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 ProSitePatterns PS00333 ATP-dependent DNA ligase signature 2. 357 381 - T 14-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 SUPERFAMILY SSF117018 5 204 3.01E-27 T 14-10-2018 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily GO:0003677|GO:0003910|GO:0006281|GO:0006310 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 Pfam PF01068 ATP dependent DNA ligase domain 188 381 1.2E-44 T 14-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Thimo_2167 fdf1264123eb8b956a2967fe914fb6f5 514 Hamap MF_00407 DNA ligase [lig]. 1 508 27.081 T 14-10-2018 IPR022865 DNA ligase, ATP-dependent, bacterial/archaeal GO:0003910 Thimo_0392 af9360a91b551d7fed751ff3e7f9961b 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 177 4.5E-4 T 14-10-2018 Thimo_0392 af9360a91b551d7fed751ff3e7f9961b 255 Pfam PF00106 short chain dehydrogenase 8 182 4.8E-23 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0392 af9360a91b551d7fed751ff3e7f9961b 255 SUPERFAMILY SSF51735 6 234 7.06E-40 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0392 af9360a91b551d7fed751ff3e7f9961b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 7.3E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0392 af9360a91b551d7fed751ff3e7f9961b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 7.3E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0392 af9360a91b551d7fed751ff3e7f9961b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.3E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0392 af9360a91b551d7fed751ff3e7f9961b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 7.3E-17 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0392 af9360a91b551d7fed751ff3e7f9961b 255 Gene3D G3DSA:3.40.50.720 6 237 6.2E-39 T 14-10-2018 Thimo_1959 ad474f355549457f7024d63906cc0d64 257 Pfam PF01026 TatD related DNase 8 255 3.7E-65 T 14-10-2018 IPR001130 TatD family GO:0016788 Thimo_1959 ad474f355549457f7024d63906cc0d64 257 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 7 15 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Thimo_1959 ad474f355549457f7024d63906cc0d64 257 SUPERFAMILY SSF51556 7 256 4.61E-78 T 14-10-2018 IPR032466 Metal-dependent hydrolase Thimo_1959 ad474f355549457f7024d63906cc0d64 257 PIRSF PIRSF005902 1 257 2.8E-64 T 14-10-2018 IPR001130 TatD family GO:0016788 Thimo_1959 ad474f355549457f7024d63906cc0d64 257 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 192 208 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Thimo_1959 ad474f355549457f7024d63906cc0d64 257 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 129 139 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Thimo_1959 ad474f355549457f7024d63906cc0d64 257 Gene3D G3DSA:3.20.20.140 6 257 4.6E-79 T 14-10-2018 Thimo_0537 cdf2904eb60e552e5c46a5e5fd01a3f1 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 186 1.4E-10 T 14-10-2018 Thimo_0537 cdf2904eb60e552e5c46a5e5fd01a3f1 229 Gene3D G3DSA:1.10.150.240 19 83 1.1E-16 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Thimo_0537 cdf2904eb60e552e5c46a5e5fd01a3f1 229 SUPERFAMILY SSF56784 6 214 5.85E-20 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0537 cdf2904eb60e552e5c46a5e5fd01a3f1 229 Gene3D G3DSA:3.40.50.1000 8 199 1.1E-16 T 14-10-2018 IPR023214 HAD superfamily Thimo_1582 f8212d299085be8afd06673f6d30c826 325 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 321 1.2E-29 T 14-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 Thimo_2607 570696ca3d824be2c1dedb020b387cbf 139 Gene3D G3DSA:1.20.1260.10 1 138 1.2E-53 T 14-10-2018 IPR012347 Ferritin-like Thimo_2607 570696ca3d824be2c1dedb020b387cbf 139 SUPERFAMILY SSF47240 3 138 1.12E-42 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_2607 570696ca3d824be2c1dedb020b387cbf 139 Pfam PF02915 Rubrerythrin 10 133 6.6E-30 T 14-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Thimo_3404 40b43393ed9bd9487aadfca61d5469cf 193 Pfam PF06577 Protein of unknown function (DUF1134) 34 193 1.9E-70 T 14-10-2018 IPR008325 Uncharacterised conserved protein UCP033924 Thimo_0137 0e39bf047ef2f61e96625984e656005a 480 Pfam PF01523 Putative modulator of DNA gyrase 20 325 8.3E-48 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Thimo_0137 0e39bf047ef2f61e96625984e656005a 480 Gene3D G3DSA:3.30.2290.10 4 227 4.1E-10 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Thimo_0137 0e39bf047ef2f61e96625984e656005a 480 SUPERFAMILY SSF111283 13 475 2.09E-90 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Thimo_3200 5d1d9ba9202f398b0e8165759f296751 192 Gene3D G3DSA:1.10.10.2520 48 133 5.8E-20 T 14-10-2018 Thimo_3200 5d1d9ba9202f398b0e8165759f296751 192 Pfam PF07486 Cell Wall Hydrolase 65 173 4.4E-28 T 14-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 Thimo_3348 8927c3a9c4b5d2dba8f4966044793794 238 Pfam PF08241 Methyltransferase domain 58 134 9.1E-14 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_3348 8927c3a9c4b5d2dba8f4966044793794 238 SUPERFAMILY SSF53335 4 211 7.03E-20 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3348 8927c3a9c4b5d2dba8f4966044793794 238 Gene3D G3DSA:3.40.50.150 22 191 1.1E-21 T 14-10-2018 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 348 3.1E-123 T 14-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:3.30.1480.10 1 135 2.3E-42 T 14-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF69705 1 131 5.49E-39 T 14-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:1.10.150.20 358 427 2.3E-23 T 14-10-2018 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF47794 435 496 2.51E-17 T 14-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SMART SM00316 139 206 3.1E-6 T 14-10-2018 IPR022967 RNA-binding domain, S1 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Pfam PF14520 Helix-hairpin-helix domain 437 492 3.5E-10 T 14-10-2018 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 445 494 7.9E-20 T 14-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:2.40.50.140 141 204 6.8E-19 T 14-10-2018 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 416 29.572 T 14-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF54814 285 349 9.81E-16 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:1.10.150.20 436 494 5.2E-23 T 14-10-2018 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:3.30.300.20 205 283 9.8E-31 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Pfam PF08529 NusA N-terminal domain 4 129 1.8E-36 T 14-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SMART SM00322 307 363 0.045 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SMART SM00322 236 299 11.0 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF47794 361 422 3.61E-13 T 14-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Gene3D G3DSA:3.30.300.20 284 353 4.3E-26 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF50249 138 205 1.95E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 SUPERFAMILY SSF54814 206 284 8.5E-30 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Thimo_0702 640a8821dc1f99b24d8568ae380554f3 509 Pfam PF13184 NusA-like KH domain 236 303 3.1E-28 T 14-10-2018 IPR025249 KH domain, NusA-like GO:0003723 Thimo_0444 5a8eebbb320247f1fe443cf659a9be07 179 Gene3D G3DSA:1.10.760.10 81 177 1.8E-28 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0444 5a8eebbb320247f1fe443cf659a9be07 179 SUPERFAMILY SSF46626 85 176 2.82E-22 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0444 5a8eebbb320247f1fe443cf659a9be07 179 PIRSF PIRSF000005 1 179 1.9E-61 T 14-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Thimo_0444 5a8eebbb320247f1fe443cf659a9be07 179 Pfam PF00034 Cytochrome c 89 177 7.1E-10 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_0444 5a8eebbb320247f1fe443cf659a9be07 179 SUPERFAMILY SSF46626 2 97 6.89E-22 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0444 5a8eebbb320247f1fe443cf659a9be07 179 Gene3D G3DSA:1.10.760.10 4 79 3.8E-25 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0444 5a8eebbb320247f1fe443cf659a9be07 179 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 1 73 8.3E-8 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2257 708a5b4c8bc14759f300ebf5219e96b0 346 Pfam PF08378 Nuclease-related domain 26 132 1.4E-23 T 14-10-2018 IPR011528 Nuclease-related domain, NERD Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 Pfam PF03466 LysR substrate binding domain 87 295 7.4E-52 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 SUPERFAMILY SSF46785 4 111 5.46E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 Gene3D G3DSA:3.40.190.290 91 299 5.0E-49 T 14-10-2018 Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 Gene3D G3DSA:1.10.10.10 1 90 1.7E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.8E-22 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.7E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.7E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.7E-10 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_2635 be13a44a0d910be59ddef96b4ea962c3 300 SUPERFAMILY SSF53850 86 298 1.52E-49 T 14-10-2018 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 SUPERFAMILY SSF51735 4 184 7.72E-76 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 Gene3D G3DSA:1.10.3730.40 184 340 3.9E-75 T 14-10-2018 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 SUPERFAMILY SSF48179 185 334 6.29E-70 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 3 330 45.877 T 14-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 PIRSF PIRSF000116 203 334 8.4E-12 T 14-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 PIRSF PIRSF000116 4 207 5.7E-46 T 14-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 17 329 1.0E-138 T 14-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 16 179 1.7E-75 T 14-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 185 328 2.5E-66 T 14-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Thimo_0384 4ce307df71bd25396e4b6839addf475f 340 Gene3D G3DSA:3.40.50.720 1 183 1.1E-79 T 14-10-2018 Thimo_0018 6ddacf78fc14fa3025b0fc6ceb4ad721 244 Pfam PF08241 Methyltransferase domain 43 134 2.7E-11 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_0018 6ddacf78fc14fa3025b0fc6ceb4ad721 244 Gene3D G3DSA:3.40.50.150 6 218 3.6E-21 T 14-10-2018 Thimo_0018 6ddacf78fc14fa3025b0fc6ceb4ad721 244 SUPERFAMILY SSF53335 20 200 4.03E-22 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 558 810 3.3E-85 T 14-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 41 281 1.1E-80 T 14-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 SUPERFAMILY SSF81593 294 443 7.38E-46 T 14-10-2018 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 34 950 19.309 T 14-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 SUPERFAMILY SSF81301 32 293 1.63E-79 T 14-10-2018 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 SUPERFAMILY SSF81593 820 948 9.42E-31 T 14-10-2018 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 SUPERFAMILY SSF81301 530 819 2.94E-84 T 14-10-2018 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Gene3D G3DSA:1.20.120.330 292 446 1.4E-58 T 14-10-2018 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Gene3D G3DSA:1.20.120.1510 456 565 1.6E-26 T 14-10-2018 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Gene3D G3DSA:3.30.460.100 567 816 3.2E-88 T 14-10-2018 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Gene3D G3DSA:3.30.460.100 46 287 3.7E-77 T 14-10-2018 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Pfam PF08335 GlnD PII-uridylyltransferase 831 918 3.8E-11 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Pfam PF08335 GlnD PII-uridylyltransferase 304 443 1.5E-45 T 14-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Thimo_1704 a0137109fc14e805e1726825f94e149d 950 Gene3D G3DSA:1.20.120.330 818 950 5.2E-44 T 14-10-2018 Thimo_1470 de0cbcdc83e6e342d30e7ec111aa98d1 446 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 441 2.2E-155 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Thimo_1470 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 91 113 5.7E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Thimo_1470 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 184 202 5.7E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Thimo_1470 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 351 373 5.7E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Thimo_1470 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 410 430 5.7E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Thimo_1470 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 212 231 5.7E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Thimo_1470 de0cbcdc83e6e342d30e7ec111aa98d1 446 PRINTS PR00175 Sodium/alanine symporter signature 307 325 5.7E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Thimo_1470 de0cbcdc83e6e342d30e7ec111aa98d1 446 Pfam PF01235 Sodium:alanine symporter family 59 445 7.2E-141 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Thimo_1918 0f0f1bfe648f46bec887c54b9d7ac790 70 Gene3D G3DSA:1.20.120.910 4 69 2.6E-19 T 14-10-2018 Thimo_1918 0f0f1bfe648f46bec887c54b9d7ac790 70 SUPERFAMILY SSF57716 38 69 7.13E-7 T 14-10-2018 Thimo_1918 0f0f1bfe648f46bec887c54b9d7ac790 70 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 35 68 5.9E-11 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Thimo_1918 0f0f1bfe648f46bec887c54b9d7ac790 70 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 6 68 1.6E-19 T 14-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type Thimo_0337 f16591373c1d0894d2b9c70db792b027 98 Pfam PF11295 Protein of unknown function (DUF3096) 60 91 6.0E-8 T 14-10-2018 IPR021446 Protein of unknown function DUF3096 Thimo_0337 f16591373c1d0894d2b9c70db792b027 98 Pfam PF11295 Protein of unknown function (DUF3096) 14 49 2.2E-14 T 14-10-2018 IPR021446 Protein of unknown function DUF3096 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 24 347 39.756 T 14-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Gene3D G3DSA:1.20.120.1810 72 104 1.6E-5 T 14-10-2018 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Gene3D G3DSA:1.10.10.10 186 262 7.8E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 71 347 1.0E-132 T 14-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 109 335 2.5E-35 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Pfam PF00140 Sigma-70 factor, region 1.2 75 106 2.4E-13 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Pfam PF04539 Sigma-70 region 3 193 267 9.9E-20 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Pfam PF04545 Sigma-70, region 4 281 334 6.8E-16 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 SUPERFAMILY SSF88659 186 260 9.59E-15 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Pfam PF04542 Sigma-70 region 2 114 182 5.2E-21 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 SUPERFAMILY SSF88946 75 183 7.59E-47 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 SUPERFAMILY SSF88659 244 341 1.79E-24 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 321 332 4.4E-26 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 285 297 4.4E-26 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 137 150 4.4E-26 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 306 321 4.4E-26 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 PRINTS PR00046 Major sigma-70 factor signature 161 169 4.4E-26 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Gene3D G3DSA:1.10.601.10 105 185 1.1E-45 T 14-10-2018 Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 Gene3D G3DSA:1.10.10.10 263 339 1.2E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1333 9e81f0b2bd38dfab58584447f2fc000e 348 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 137 150 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Thimo_2136 803624984397d0fb3d117529550bf65a 119 SUPERFAMILY SSF57652 37 115 5.23E-24 T 14-10-2018 IPR036369 High potential iron-sulphur protein superfamily GO:0009055|GO:0019646 Thimo_2136 803624984397d0fb3d117529550bf65a 119 Gene3D G3DSA:4.10.490.10 38 117 2.6E-20 T 14-10-2018 IPR036369 High potential iron-sulphur protein superfamily GO:0009055|GO:0019646 Thimo_2136 803624984397d0fb3d117529550bf65a 119 Pfam PF01355 High potential iron-sulfur protein 48 114 6.0E-22 T 14-10-2018 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 Thimo_3616 b547e09a0b13d02e301aa58b8ed84a9d 131 Pfam PF00011 Hsp20/alpha crystallin family 30 129 1.6E-19 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Thimo_3616 b547e09a0b13d02e301aa58b8ed84a9d 131 Gene3D G3DSA:2.60.40.790 1 130 9.5E-30 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_3616 b547e09a0b13d02e301aa58b8ed84a9d 131 SUPERFAMILY SSF49764 17 130 8.72E-30 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_2399 ce60878b4de99bfebb5a0710327bd069 294 Gene3D G3DSA:3.30.200.20 1 95 3.4E-16 T 14-10-2018 Thimo_2399 ce60878b4de99bfebb5a0710327bd069 294 PIRSF PIRSF006221 3 294 1.4E-93 T 14-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 Thimo_2399 ce60878b4de99bfebb5a0710327bd069 294 Pfam PF03881 Fructosamine kinase 4 291 9.4E-103 T 14-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 Thimo_2399 ce60878b4de99bfebb5a0710327bd069 294 SUPERFAMILY SSF56112 19 287 2.19E-40 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_2399 ce60878b4de99bfebb5a0710327bd069 294 Gene3D G3DSA:3.90.1200.10 102 294 1.1E-63 T 14-10-2018 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 401 6.6E-144 T 14-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 Gene3D G3DSA:3.90.1260.10 67 360 7.6E-159 T 14-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 SUPERFAMILY SSF52402 7 211 2.65E-50 T 14-10-2018 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 120 131 - T 14-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 Pfam PF00764 Arginosuccinate synthase 10 400 6.5E-153 T 14-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 Gene3D G3DSA:3.40.50.620 9 179 7.6E-159 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 14-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 Gene3D G3DSA:1.20.5.470 381 404 6.9E-9 T 14-10-2018 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 406 52.048 T 14-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Thimo_1695 9eda02aa78eaae61a18915a6edec5f36 410 SUPERFAMILY SSF69864 180 404 9.42E-94 T 14-10-2018 Thimo_0813 e658e865ca9a1070a1fd1147b9da6725 444 Pfam PF13699 Domain of unknown function (DUF4157) 83 158 1.1E-24 T 14-10-2018 IPR025295 Domain of unknown function DUF4157 Thimo_0813 e658e865ca9a1070a1fd1147b9da6725 444 Pfam PF03782 AMOP domain 218 299 1.9E-7 T 14-10-2018 IPR005533 AMOP domain Thimo_0813 e658e865ca9a1070a1fd1147b9da6725 444 SMART SM00723 199 348 6.3E-4 T 14-10-2018 IPR005533 AMOP domain Thimo_3433 f683c4bbde92ee6144ee1a8737bc7d6d 422 Gene3D G3DSA:3.40.190.10 67 372 1.0E-65 T 14-10-2018 Thimo_3433 f683c4bbde92ee6144ee1a8737bc7d6d 422 Pfam PF01547 Bacterial extracellular solute-binding protein 68 334 4.2E-23 T 14-10-2018 IPR006059 Bacterial extracellular solute-binding protein Thimo_3433 f683c4bbde92ee6144ee1a8737bc7d6d 422 Gene3D G3DSA:3.40.190.10 152 394 1.0E-65 T 14-10-2018 Thimo_3433 f683c4bbde92ee6144ee1a8737bc7d6d 422 SUPERFAMILY SSF53850 47 394 1.6E-55 T 14-10-2018 Thimo_0167 4014a6b80ec936891f7eb2491e239b0f 788 SMART SM00327 593 787 4.7E-12 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0167 4014a6b80ec936891f7eb2491e239b0f 788 Pfam PF00092 von Willebrand factor type A domain 596 764 5.3E-6 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0167 4014a6b80ec936891f7eb2491e239b0f 788 Gene3D G3DSA:3.40.50.410 590 777 3.0E-14 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0167 4014a6b80ec936891f7eb2491e239b0f 788 SUPERFAMILY SSF53300 594 782 7.02E-21 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_3049 8c6c48e7865509dc6cc89ea493ea30ab 369 Pfam PF13353 4Fe-4S single cluster domain 78 174 2.2E-5 T 14-10-2018 Thimo_3049 8c6c48e7865509dc6cc89ea493ea30ab 369 Gene3D G3DSA:3.20.20.70 73 293 1.5E-33 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3049 8c6c48e7865509dc6cc89ea493ea30ab 369 TIGRFAM TIGR04337 AmmeMemoSam_rS: AmmeMemoRadiSam system radical SAM enzyme 12 360 2.0E-196 T 14-10-2018 IPR027596 AmmeMemoRadiSam system radical SAM enzyme Thimo_3049 8c6c48e7865509dc6cc89ea493ea30ab 369 PIRSF PIRSF004869 1 320 5.0E-93 T 14-10-2018 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted Thimo_3049 8c6c48e7865509dc6cc89ea493ea30ab 369 SUPERFAMILY SSF102114 53 321 2.16E-40 T 14-10-2018 Thimo_3049 8c6c48e7865509dc6cc89ea493ea30ab 369 Pfam PF04055 Radical SAM superfamily 87 235 1.6E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_2123 315df13d3f8e5b3f99f4c3e32a48bad6 401 Pfam PF01593 Flavin containing amine oxidoreductase 12 271 4.9E-16 T 14-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Thimo_2123 315df13d3f8e5b3f99f4c3e32a48bad6 401 Gene3D G3DSA:3.50.50.60 6 383 7.9E-43 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2123 315df13d3f8e5b3f99f4c3e32a48bad6 401 SUPERFAMILY SSF51905 6 383 8.26E-34 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2123 315df13d3f8e5b3f99f4c3e32a48bad6 401 Gene3D G3DSA:1.10.3110.20 108 178 7.9E-43 T 14-10-2018 Thimo_2123 315df13d3f8e5b3f99f4c3e32a48bad6 401 Gene3D G3DSA:3.90.660.20 39 349 7.9E-43 T 14-10-2018 Thimo_1027 3e73323b791cd80f11aba68acb47ace9 423 SUPERFAMILY SSF53756 2 422 7.96E-52 T 14-10-2018 Thimo_1027 3e73323b791cd80f11aba68acb47ace9 423 Gene3D G3DSA:3.40.50.2000 17 211 5.0E-24 T 14-10-2018 Thimo_1027 3e73323b791cd80f11aba68acb47ace9 423 Pfam PF13579 Glycosyl transferase 4-like domain 22 200 3.8E-19 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1027 3e73323b791cd80f11aba68acb47ace9 423 Gene3D G3DSA:3.40.50.2000 212 403 1.6E-22 T 14-10-2018 Thimo_1027 3e73323b791cd80f11aba68acb47ace9 423 Pfam PF00534 Glycosyl transferases group 1 216 397 9.6E-11 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_2791 2a4d53baa2f163d3b7136604033ab934 208 TIGRFAM TIGR02019 BchJ: bacteriochlorophyll 4-vinyl reductase 18 205 4.2E-56 T 14-10-2018 IPR010249 Bacteriochlorophyll 4-vinyl reductase GO:0015979|GO:0030494 Thimo_2791 2a4d53baa2f163d3b7136604033ab934 208 Pfam PF02830 V4R domain 147 206 1.7E-17 T 14-10-2018 IPR004096 4-vinyl reductase, 4VR Thimo_2791 2a4d53baa2f163d3b7136604033ab934 208 SMART SM00989 146 207 6.0E-19 T 14-10-2018 IPR004096 4-vinyl reductase, 4VR Thimo_2791 2a4d53baa2f163d3b7136604033ab934 208 Gene3D G3DSA:3.30.1380.20 57 208 1.3E-13 T 14-10-2018 Thimo_2791 2a4d53baa2f163d3b7136604033ab934 208 SUPERFAMILY SSF111126 81 207 1.1E-26 T 14-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily Thimo_2325 5f2ca5d0e1786f9a38af1f04c470eff4 135 Pfam PF05154 TM2 domain 71 119 2.8E-14 T 14-10-2018 IPR007829 TM2 domain Thimo_2325 5f2ca5d0e1786f9a38af1f04c470eff4 135 Pfam PF05154 TM2 domain 7 54 4.9E-15 T 14-10-2018 IPR007829 TM2 domain Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 168 196 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 Gene3D G3DSA:1.10.530.10 123 267 1.2E-44 T 14-10-2018 Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 Gene3D G3DSA:1.25.40.10 26 122 7.7E-19 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 SMART SM00671 69 104 0.0075 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 SMART SM00671 33 68 8.9E-5 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 SUPERFAMILY SSF81901 30 112 1.57E-14 T 14-10-2018 Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 Pfam PF01464 Transglycosylase SLT domain 154 256 6.5E-28 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 SUPERFAMILY SSF53955 135 265 3.38E-46 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 Pfam PF08238 Sel1 repeat 70 104 3.7E-4 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_1974 f8f6f503bbcbe5650b88cb5811652a9b 267 Pfam PF08238 Sel1 repeat 40 68 8.8E-4 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_2404 863652bf272fdf0d404596610762df09 84 Pfam PF13244 Domain of unknown function (DUF4040) 12 75 3.6E-17 T 14-10-2018 IPR025383 Domain of unknown function DUF4040 Thimo_2885 778d8e52bdd6a9cc3003cce30558c703 176 Pfam PF01797 Transposase IS200 like 12 130 3.3E-11 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_2885 778d8e52bdd6a9cc3003cce30558c703 176 Gene3D G3DSA:3.30.70.1290 1 171 7.8E-45 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2885 778d8e52bdd6a9cc3003cce30558c703 176 SMART SM01321 8 131 5.5E-40 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_2885 778d8e52bdd6a9cc3003cce30558c703 176 SUPERFAMILY SSF143422 1 136 2.09E-35 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_1946 b8f440b7e9474376126f6f7399917b5b 425 Gene3D G3DSA:3.40.50.11720 35 208 1.7E-48 T 14-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Thimo_1946 b8f440b7e9474376126f6f7399917b5b 425 SUPERFAMILY SSF53756 56 420 2.03E-19 T 14-10-2018 Thimo_1946 b8f440b7e9474376126f6f7399917b5b 425 Gene3D G3DSA:3.40.50.2000 214 403 2.8E-69 T 14-10-2018 Thimo_1946 b8f440b7e9474376126f6f7399917b5b 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 33 209 5.2E-66 T 14-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Thimo_1946 b8f440b7e9474376126f6f7399917b5b 425 Pfam PF00534 Glycosyl transferases group 1 238 399 1.3E-10 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_0924 18e935a72ef0561a9efc45ef9f200330 226 SUPERFAMILY SSF53474 4 183 3.57E-30 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0924 18e935a72ef0561a9efc45ef9f200330 226 Pfam PF06821 Serine hydrolase 5 185 8.0E-54 T 14-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 Thimo_0924 18e935a72ef0561a9efc45ef9f200330 226 Gene3D G3DSA:3.40.50.1820 2 190 5.7E-52 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_3195 c54c925fba00b4cf7994e96fd28d018a 316 Pfam PF13242 HAD-hyrolase-like 209 287 5.3E-5 T 14-10-2018 Thimo_3195 c54c925fba00b4cf7994e96fd28d018a 316 Gene3D G3DSA:3.40.50.1000 36 269 1.0E-19 T 14-10-2018 IPR023214 HAD superfamily Thimo_3195 c54c925fba00b4cf7994e96fd28d018a 316 SUPERFAMILY SSF56784 37 292 4.86E-20 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0560 495bb638b3157e15bfa120920a1f12dc 163 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 130 2.3E-28 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_0560 495bb638b3157e15bfa120920a1f12dc 163 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 130 2.3E-26 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_0560 495bb638b3157e15bfa120920a1f12dc 163 Gene3D G3DSA:3.30.70.560 3 154 2.9E-36 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_0560 495bb638b3157e15bfa120920a1f12dc 163 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 85 96 - T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_0560 495bb638b3157e15bfa120920a1f12dc 163 SUPERFAMILY SSF55083 3 152 8.89E-42 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_0199 e922803f83bd2797b4bee7a112791193 93 SUPERFAMILY SSF47413 9 83 3.44E-21 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_0199 e922803f83bd2797b4bee7a112791193 93 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 3 82 4.2E-32 T 14-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 Thimo_0199 e922803f83bd2797b4bee7a112791193 93 Pfam PF01381 Helix-turn-helix 16 66 2.1E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_0199 e922803f83bd2797b4bee7a112791193 93 SMART SM00530 12 68 7.9E-5 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_0199 e922803f83bd2797b4bee7a112791193 93 Gene3D G3DSA:1.10.260.40 2 92 7.2E-30 T 14-10-2018 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 SUPERFAMILY SSF46911 3 74 3.4E-28 T 14-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 9.6E-19 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 9.6E-19 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 9.6E-19 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 9.6E-19 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 Pfam PF01084 Ribosomal protein S18 18 68 2.4E-24 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 5.0E-20 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 2.4E-36 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.462 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 14-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1510 ad040c4087d092f1f8177ca90c41d5d0 74 Gene3D G3DSA:4.10.640.10 1 74 6.8E-27 T 14-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1603 0b0f5166a12fb50d8283a1cca0f6082c 382 Pfam PF13437 HlyD family secretion protein 207 301 2.2E-11 T 14-10-2018 Thimo_1603 0b0f5166a12fb50d8283a1cca0f6082c 382 Gene3D G3DSA:2.40.420.20 321 344 3.4E-25 T 14-10-2018 Thimo_1603 0b0f5166a12fb50d8283a1cca0f6082c 382 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 79 343 8.8E-30 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1603 0b0f5166a12fb50d8283a1cca0f6082c 382 Gene3D G3DSA:2.40.30.170 84 320 3.4E-25 T 14-10-2018 Thimo_1603 0b0f5166a12fb50d8283a1cca0f6082c 382 Gene3D G3DSA:2.40.50.100 95 237 3.4E-25 T 14-10-2018 Thimo_1603 0b0f5166a12fb50d8283a1cca0f6082c 382 Gene3D G3DSA:1.10.287.470 130 203 3.4E-25 T 14-10-2018 Thimo_1603 0b0f5166a12fb50d8283a1cca0f6082c 382 SUPERFAMILY SSF111369 87 265 3.01E-10 T 14-10-2018 Thimo_0637 f6712db01d8d8eac084d82b10f82de8d 406 Gene3D G3DSA:1.10.287.470 113 204 1.1E-65 T 14-10-2018 Thimo_0637 f6712db01d8d8eac084d82b10f82de8d 406 Gene3D G3DSA:2.40.50.100 79 246 1.1E-65 T 14-10-2018 Thimo_0637 f6712db01d8d8eac084d82b10f82de8d 406 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 72 314 2.4E-19 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_0637 f6712db01d8d8eac084d82b10f82de8d 406 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 68 401 3.5E-54 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_0637 f6712db01d8d8eac084d82b10f82de8d 406 SUPERFAMILY SSF111369 69 319 1.44E-21 T 14-10-2018 Thimo_0637 f6712db01d8d8eac084d82b10f82de8d 406 Gene3D G3DSA:2.40.420.20 324 387 1.1E-65 T 14-10-2018 Thimo_0637 f6712db01d8d8eac084d82b10f82de8d 406 Gene3D G3DSA:2.40.30.170 69 323 1.1E-65 T 14-10-2018 Thimo_0612 49eadd39a71b811d7f37b34a8eb1f41d 465 Pfam PF02601 Exonuclease VII, large subunit 133 448 6.1E-92 T 14-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Thimo_0612 49eadd39a71b811d7f37b34a8eb1f41d 465 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 14 451 28.722 T 14-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Thimo_0612 49eadd39a71b811d7f37b34a8eb1f41d 465 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 18 451 3.0E-138 T 14-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Thimo_0612 49eadd39a71b811d7f37b34a8eb1f41d 465 Pfam PF13742 OB-fold nucleic acid binding domain 17 109 7.1E-29 T 14-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 Thimo_0655 15d4b164a495cc56c57c3a4ff1274231 230 SMART SM00900 107 199 3.8E-33 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Thimo_0655 15d4b164a495cc56c57c3a4ff1274231 230 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 8 201 20.795 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_0655 15d4b164a495cc56c57c3a4ff1274231 230 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 16 200 6.4E-39 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_0655 15d4b164a495cc56c57c3a4ff1274231 230 Pfam PF04205 FMN-binding domain 107 197 1.2E-19 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Thimo_0655 15d4b164a495cc56c57c3a4ff1274231 230 PIRSF PIRSF006091 5 211 6.0E-48 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_2598 54e9f4da45cc7d99a3a0694abb6c8f45 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 29.347 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Thimo_2598 54e9f4da45cc7d99a3a0694abb6c8f45 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 154 1.7E-49 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Thimo_2598 54e9f4da45cc7d99a3a0694abb6c8f45 155 SUPERFAMILY SSF75217 1 153 1.15E-49 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Thimo_2598 54e9f4da45cc7d99a3a0694abb6c8f45 155 Gene3D G3DSA:3.40.1280.10 1 155 7.6E-52 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_2598 54e9f4da45cc7d99a3a0694abb6c8f45 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 153 4.6E-51 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Thimo_2598 54e9f4da45cc7d99a3a0694abb6c8f45 155 PIRSF PIRSF004505 1 154 8.2E-45 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 201 243 1.8E-13 T 14-10-2018 IPR010177 Doubled CXXCH motif Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 250 285 4.1E-11 T 14-10-2018 IPR010177 Doubled CXXCH motif Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 155 193 9.2E-7 T 14-10-2018 IPR010177 Doubled CXXCH motif Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 Gene3D G3DSA:3.90.10.10 195 290 2.9E-10 T 14-10-2018 Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 TIGRFAM TIGR03508 decahem_SO: decaheme c-type cytochrome, DmsE family 61 327 7.6E-79 T 14-10-2018 IPR020015 Decaheme cytochrome, c-type, DmsE Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 Gene3D G3DSA:3.90.10.10 54 167 5.0E-5 T 14-10-2018 Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 SUPERFAMILY SSF48695 59 327 1.51E-46 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 250 287 5.6E-10 T 14-10-2018 IPR010177 Doubled CXXCH motif Thimo_2812 81c3e6c941e73d6781b76809b1190e71 334 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 201 242 7.2E-11 T 14-10-2018 IPR010177 Doubled CXXCH motif Thimo_3381 665e0487491d2ccd462bf430e7b6e78e 256 SUPERFAMILY SSF53448 1 253 2.93E-61 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3381 665e0487491d2ccd462bf430e7b6e78e 256 Gene3D G3DSA:3.90.550.10 2 251 8.3E-90 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3381 665e0487491d2ccd462bf430e7b6e78e 256 Pfam PF02348 Cytidylyltransferase 5 224 2.8E-56 T 14-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Thimo_3381 665e0487491d2ccd462bf430e7b6e78e 256 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 244 5.0E-89 T 14-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Thimo_3381 665e0487491d2ccd462bf430e7b6e78e 256 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 251 42.818 T 14-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Thimo_2207 a44b499c2b17fdc0ef58b9cf889bec34 307 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 261 274 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Thimo_2207 a44b499c2b17fdc0ef58b9cf889bec34 307 SUPERFAMILY SSF53613 23 302 9.98E-46 T 14-10-2018 IPR029056 Ribokinase-like Thimo_2207 a44b499c2b17fdc0ef58b9cf889bec34 307 Pfam PF00294 pfkB family carbohydrate kinase 27 303 3.8E-28 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB Thimo_2207 a44b499c2b17fdc0ef58b9cf889bec34 307 Gene3D G3DSA:3.40.1190.20 22 304 6.1E-70 T 14-10-2018 IPR029056 Ribokinase-like Thimo_2288 822353681d287dda0ae02b22129c8498 144 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 105 134 2.5E-11 T 14-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Thimo_2288 822353681d287dda0ae02b22129c8498 144 SUPERFAMILY SSF109635 11 103 1.96E-36 T 14-10-2018 IPR037187 DksA, N-terminal domain superfamily Thimo_2288 822353681d287dda0ae02b22129c8498 144 Gene3D G3DSA:1.20.120.910 16 143 1.7E-39 T 14-10-2018 Thimo_2288 822353681d287dda0ae02b22129c8498 144 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 22 144 31.094 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Thimo_2288 822353681d287dda0ae02b22129c8498 144 SUPERFAMILY SSF57716 105 142 1.33E-9 T 14-10-2018 Thimo_2288 822353681d287dda0ae02b22129c8498 144 PRINTS PR00618 DksA/TraR zinc finger signature 108 119 5.8E-5 T 14-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Thimo_2288 822353681d287dda0ae02b22129c8498 144 PRINTS PR00618 DksA/TraR zinc finger signature 120 132 5.8E-5 T 14-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Thimo_2288 822353681d287dda0ae02b22129c8498 144 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 108 132 - T 14-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Thimo_2288 822353681d287dda0ae02b22129c8498 144 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 26 134 7.2E-53 T 14-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Thimo_1203 f9e376f9f30c30bde69ac29521a33de6 205 Pfam PF01926 50S ribosome-binding GTPase 27 145 1.3E-18 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1203 f9e376f9f30c30bde69ac29521a33de6 205 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 13 195 25.958 T 14-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Thimo_1203 f9e376f9f30c30bde69ac29521a33de6 205 Gene3D G3DSA:3.40.50.300 4 198 1.8E-47 T 14-10-2018 Thimo_1203 f9e376f9f30c30bde69ac29521a33de6 205 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 8 191 2.4E-66 T 14-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Thimo_1203 f9e376f9f30c30bde69ac29521a33de6 205 SUPERFAMILY SSF52540 7 195 1.8E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2412 07d58b069a1b8923fa9de0762c59fe02 367 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 41 52 - T 14-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2412 07d58b069a1b8923fa9de0762c59fe02 367 SUPERFAMILY SSF56762 14 367 2.88E-99 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2412 07d58b069a1b8923fa9de0762c59fe02 367 Gene3D G3DSA:1.10.645.20 6 367 3.6E-121 T 14-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2412 07d58b069a1b8923fa9de0762c59fe02 367 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 119 284 5.9E-56 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2412 07d58b069a1b8923fa9de0762c59fe02 367 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 290 367 1.3E-11 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3248 738a6da61345dfaea45b277eca778d10 516 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 64 75 - T 14-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Thimo_3248 738a6da61345dfaea45b277eca778d10 516 SUPERFAMILY SSF53146 386 499 1.19E-26 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3248 738a6da61345dfaea45b277eca778d10 516 SUPERFAMILY SSF102114 52 269 7.72E-36 T 14-10-2018 Thimo_3248 738a6da61345dfaea45b277eca778d10 516 Pfam PF04055 Radical SAM superfamily 64 243 1.1E-25 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_3248 738a6da61345dfaea45b277eca778d10 516 ProSitePatterns PS00267 Tachykinin family signature. 268 273 - T 14-10-2018 IPR013055 Tachykinin/Neurokinin-like, conserved site Thimo_3248 738a6da61345dfaea45b277eca778d10 516 Gene3D G3DSA:3.30.420.130 384 504 2.2E-25 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3248 738a6da61345dfaea45b277eca778d10 516 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 37 496 9.1E-193 T 14-10-2018 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 Thimo_3248 738a6da61345dfaea45b277eca778d10 516 Gene3D G3DSA:3.20.20.70 49 345 5.0E-30 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3248 738a6da61345dfaea45b277eca778d10 516 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 398 494 4.7E-19 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_2860 a6842a81fc7fc34af72f313be573d92d 217 Pfam PF00297 Ribosomal protein L3 101 186 1.2E-19 T 14-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2860 a6842a81fc7fc34af72f313be573d92d 217 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 210 38.744 T 14-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2860 a6842a81fc7fc34af72f313be573d92d 217 Gene3D G3DSA:2.40.50.620 33 98 2.8E-17 T 14-10-2018 Thimo_2860 a6842a81fc7fc34af72f313be573d92d 217 Gene3D G3DSA:2.40.30.10 132 213 1.1E-16 T 14-10-2018 Thimo_2860 a6842a81fc7fc34af72f313be573d92d 217 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 206 3.0E-86 T 14-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2860 a6842a81fc7fc34af72f313be573d92d 217 SUPERFAMILY SSF50447 1 213 5.74E-81 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2860 a6842a81fc7fc34af72f313be573d92d 217 ProSitePatterns PS00474 Ribosomal protein L3 signature. 104 127 - T 14-10-2018 IPR019926 Ribosomal protein L3, conserved site Thimo_2434 730cc518d699eb542323caf407811209 499 SUPERFAMILY SSF52343 363 496 1.26E-23 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_2434 730cc518d699eb542323caf407811209 499 SUPERFAMILY SSF63380 278 373 5.41E-13 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Thimo_2434 730cc518d699eb542323caf407811209 499 SUPERFAMILY SSF54292 170 264 6.16E-23 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Thimo_2434 730cc518d699eb542323caf407811209 499 Gene3D G3DSA:3.10.20.30 161 273 1.4E-21 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_2434 730cc518d699eb542323caf407811209 499 PRINTS PR00410 Phenol hydroxylase reductase family signature 383 402 1.3E-10 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Thimo_2434 730cc518d699eb542323caf407811209 499 PRINTS PR00410 Phenol hydroxylase reductase family signature 367 376 1.3E-10 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Thimo_2434 730cc518d699eb542323caf407811209 499 PRINTS PR00410 Phenol hydroxylase reductase family signature 466 474 1.3E-10 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Thimo_2434 730cc518d699eb542323caf407811209 499 PRINTS PR00410 Phenol hydroxylase reductase family signature 307 319 1.3E-10 T 14-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Thimo_2434 730cc518d699eb542323caf407811209 499 Gene3D G3DSA:3.40.50.80 373 498 4.1E-17 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Thimo_2434 730cc518d699eb542323caf407811209 499 Gene3D G3DSA:2.40.30.10 277 372 8.3E-16 T 14-10-2018 Thimo_2434 730cc518d699eb542323caf407811209 499 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 212 220 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Thimo_2434 730cc518d699eb542323caf407811209 499 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 184 253 1.4E-10 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Thimo_2624 b82a6d8e441c46556115e526496de52d 303 Gene3D G3DSA:1.25.40.10 58 196 8.0E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2624 b82a6d8e441c46556115e526496de52d 303 SUPERFAMILY SSF48452 78 138 8.95E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2763 c02e7acb461092b50f3513f703aed47a 151 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 14-10-2018 IPR002178 PTS EIIA type-2 domain Thimo_2763 c02e7acb461092b50f3513f703aed47a 151 SUPERFAMILY SSF55804 5 146 5.62E-37 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Thimo_2763 c02e7acb461092b50f3513f703aed47a 151 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 1.1E-35 T 14-10-2018 IPR002178 PTS EIIA type-2 domain Thimo_2763 c02e7acb461092b50f3513f703aed47a 151 Gene3D G3DSA:3.40.930.10 4 150 3.0E-47 T 14-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Thimo_2413 f7d884d60a46d15d82144866883acb81 130 Gene3D G3DSA:3.30.70.3270 29 130 5.9E-18 T 14-10-2018 Thimo_2413 f7d884d60a46d15d82144866883acb81 130 SUPERFAMILY SSF46548 14 102 9.42E-14 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_2413 f7d884d60a46d15d82144866883acb81 130 Pfam PF12838 4Fe-4S dicluster domain 50 102 1.0E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1793 46e70467f632a72367f18a27d54a4d01 339 Pfam PF01545 Cation efflux family 32 249 1.2E-37 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Thimo_1793 46e70467f632a72367f18a27d54a4d01 339 Gene3D G3DSA:1.20.1510.10 23 173 8.1E-23 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Thimo_1793 46e70467f632a72367f18a27d54a4d01 339 Gene3D G3DSA:1.20.1510.10 175 249 2.8E-11 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Thimo_1793 46e70467f632a72367f18a27d54a4d01 339 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 324 2.9E-63 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Thimo_1793 46e70467f632a72367f18a27d54a4d01 339 SUPERFAMILY SSF161111 20 250 4.18E-51 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Thimo_2570 2aedff4bba09202619d4fe90b5a13924 345 Pfam PF00589 Phage integrase family 133 327 3.8E-36 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Thimo_2570 2aedff4bba09202619d4fe90b5a13924 345 TIGRFAM TIGR02249 integrase_gron: integron integrase 29 342 1.8E-133 T 14-10-2018 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 Thimo_2570 2aedff4bba09202619d4fe90b5a13924 345 Gene3D G3DSA:1.10.443.10 118 331 4.7E-55 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Thimo_2570 2aedff4bba09202619d4fe90b5a13924 345 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 28 109 6.8E-26 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Thimo_2570 2aedff4bba09202619d4fe90b5a13924 345 Gene3D G3DSA:1.10.150.130 25 113 5.3E-33 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Thimo_2570 2aedff4bba09202619d4fe90b5a13924 345 SUPERFAMILY SSF56349 34 328 5.05E-38 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Thimo_1354 cc63418b55f6a569f0d242ec020276a2 151 SUPERFAMILY SSF82093 29 135 4.19E-38 T 14-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 Thimo_1354 cc63418b55f6a569f0d242ec020276a2 151 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 140 31.441 T 14-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 Thimo_1354 cc63418b55f6a569f0d242ec020276a2 151 Pfam PF03100 CcmE 4 130 8.8E-45 T 14-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 Thimo_1354 cc63418b55f6a569f0d242ec020276a2 151 Gene3D G3DSA:2.40.50.140 29 136 7.8E-38 T 14-10-2018 Thimo_3519 48f08866180a120a09d2e74132508c06 423 Pfam PF04285 Protein of unknown function (DUF444) 3 421 2.6E-177 T 14-10-2018 IPR006698 Uncharacterised protein family UPF0229 Thimo_3519 48f08866180a120a09d2e74132508c06 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 38.689 T 14-10-2018 IPR006698 Uncharacterised protein family UPF0229 Thimo_3519 48f08866180a120a09d2e74132508c06 423 SUPERFAMILY SSF53300 253 356 1.84E-6 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1629 eb8bfe26fabe4d792ba083785d2ac97f 479 Gene3D G3DSA:3.40.50.720 14 289 6.5E-34 T 14-10-2018 Thimo_1629 eb8bfe26fabe4d792ba083785d2ac97f 479 SUPERFAMILY SSF51735 13 272 1.93E-35 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1629 eb8bfe26fabe4d792ba083785d2ac97f 479 Pfam PF13460 NAD(P)H-binding 19 128 2.3E-8 T 14-10-2018 IPR016040 NAD(P)-binding domain Thimo_0715 ec34f52c296eee750f615c392d2b55ca 115 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 12 101 1.0E-9 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_0715 ec34f52c296eee750f615c392d2b55ca 115 SUPERFAMILY SSF53146 1 110 9.94E-20 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_0715 ec34f52c296eee750f615c392d2b55ca 115 Gene3D G3DSA:3.30.420.130 1 108 5.7E-16 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_0559 ff7c833f78527891be58e2c16a466554 118 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 5.8E-32 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Thimo_0559 ff7c833f78527891be58e2c16a466554 118 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 8.6E-24 T 14-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Thimo_0559 ff7c833f78527891be58e2c16a466554 118 SUPERFAMILY SSF55620 1 114 1.45E-35 T 14-10-2018 Thimo_0559 ff7c833f78527891be58e2c16a466554 118 SMART SM00905 4 114 3.2E-45 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Thimo_0559 ff7c833f78527891be58e2c16a466554 118 Pfam PF02152 Dihydroneopterin aldolase 4 113 8.2E-32 T 14-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Thimo_0559 ff7c833f78527891be58e2c16a466554 118 Gene3D G3DSA:3.30.1130.10 1 118 4.7E-40 T 14-10-2018 Thimo_3183 6de8f8fabce64227e8ce5e94948fdb6d 352 Pfam PF01497 Periplasmic binding protein 109 289 2.1E-11 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain Thimo_3183 6de8f8fabce64227e8ce5e94948fdb6d 352 Gene3D G3DSA:1.20.58.2180 170 343 2.0E-56 T 14-10-2018 Thimo_3183 6de8f8fabce64227e8ce5e94948fdb6d 352 Gene3D G3DSA:3.40.50.1980 194 297 2.0E-56 T 14-10-2018 Thimo_3183 6de8f8fabce64227e8ce5e94948fdb6d 352 Gene3D G3DSA:3.40.50.1980 30 164 2.5E-31 T 14-10-2018 Thimo_3183 6de8f8fabce64227e8ce5e94948fdb6d 352 SUPERFAMILY SSF53807 36 348 8.24E-47 T 14-10-2018 Thimo_0523 0ae97d0ce632510e526f5fd2bc8f7cf0 88 Gene3D G3DSA:3.30.2020.10 1 80 2.1E-8 T 14-10-2018 IPR036782 NE0471-like, N-terminal Thimo_0523 0ae97d0ce632510e526f5fd2bc8f7cf0 88 Pfam PF10387 Protein of unknown function (DUF2442) 4 74 2.6E-12 T 14-10-2018 IPR018841 Protein of unknown function DUF2442 Thimo_0523 0ae97d0ce632510e526f5fd2bc8f7cf0 88 SUPERFAMILY SSF143880 1 78 3.4E-16 T 14-10-2018 IPR036782 NE0471-like, N-terminal Thimo_2155 ab005aebc893cb9513fb03085287d659 325 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 301 6.1E-15 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Thimo_2155 ab005aebc893cb9513fb03085287d659 325 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 323 3.9E-21 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Thimo_2155 ab005aebc893cb9513fb03085287d659 325 SMART SM00382 41 234 4.0E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2155 ab005aebc893cb9513fb03085287d659 325 SUPERFAMILY SSF52540 7 256 1.45E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2155 ab005aebc893cb9513fb03085287d659 325 Gene3D G3DSA:3.40.50.300 5 325 3.7E-94 T 14-10-2018 Thimo_2155 ab005aebc893cb9513fb03085287d659 325 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2155 ab005aebc893cb9513fb03085287d659 325 Pfam PF00005 ABC transporter 33 184 2.8E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1572 c84b5d85dc6b85505db9fac0bbba8fee 70 Pfam PF11809 Domain of unknown function (DUF3330) 11 51 4.3E-9 T 14-10-2018 IPR021767 Transposon Tn21 modulator protein Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Pfam PF00128 Alpha amylase, catalytic domain 177 277 9.7E-13 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Pfam PF00128 Alpha amylase, catalytic domain 314 532 1.8E-5 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 10 666 3.2E-203 T 14-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Gene3D G3DSA:2.60.40.1180 590 693 2.4E-17 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SMART SM00642 159 570 6.2E-10 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SUPERFAMILY SSF81296 10 147 7.56E-28 T 14-10-2018 IPR014756 Immunoglobulin E-set Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SUPERFAMILY SSF51011 593 693 5.75E-21 T 14-10-2018 Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 16 107 6.2E-11 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Gene3D G3DSA:2.60.40.10 1 135 5.8E-31 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 SUPERFAMILY SSF51445 134 577 1.28E-129 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_1103 dd871f8b10dbcb29b9b00fac3ebc27e5 697 Gene3D G3DSA:3.20.20.80 136 584 1.2E-178 T 14-10-2018 Thimo_1309 57fc9ae7812c993772d3b47b17db5cbf 658 Pfam PF03600 Citrate transporter 52 606 5.4E-49 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Thimo_1309 57fc9ae7812c993772d3b47b17db5cbf 658 SUPERFAMILY SSF116726 375 455 2.35E-13 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1309 57fc9ae7812c993772d3b47b17db5cbf 658 Pfam PF02080 TrkA-C domain 377 448 2.5E-6 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Thimo_1309 57fc9ae7812c993772d3b47b17db5cbf 658 Gene3D G3DSA:3.30.70.1450 375 451 2.4E-13 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_2852 f74742c0c3772db0824d5f7e94bd581b 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.779 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2852 f74742c0c3772db0824d5f7e94bd581b 66 SUPERFAMILY SSF46561 1 62 5.1E-23 T 14-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2852 f74742c0c3772db0824d5f7e94bd581b 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 59 1.4E-21 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2852 f74742c0c3772db0824d5f7e94bd581b 66 Gene3D G3DSA:1.10.287.310 1 61 5.9E-28 T 14-10-2018 Thimo_2852 f74742c0c3772db0824d5f7e94bd581b 66 Pfam PF00831 Ribosomal L29 protein 4 59 6.2E-25 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_3074 9eea46d06fff8cf988b1fdc3269ecd97 386 SUPERFAMILY SSF53756 6 381 1.39E-48 T 14-10-2018 Thimo_3074 9eea46d06fff8cf988b1fdc3269ecd97 386 Gene3D G3DSA:3.40.50.2000 205 366 3.2E-25 T 14-10-2018 Thimo_3074 9eea46d06fff8cf988b1fdc3269ecd97 386 Gene3D G3DSA:3.40.50.2000 6 199 7.4E-13 T 14-10-2018 Thimo_3074 9eea46d06fff8cf988b1fdc3269ecd97 386 Pfam PF13439 Glycosyltransferase Family 4 20 191 1.1E-9 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_3074 9eea46d06fff8cf988b1fdc3269ecd97 386 Pfam PF00534 Glycosyl transferases group 1 206 355 6.5E-18 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1996 39092aaf7174312871cafbfacd494ece 227 PIRSF PIRSF005624 1 193 1.5E-42 T 14-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 Thimo_1996 39092aaf7174312871cafbfacd494ece 227 SUPERFAMILY SSF52540 4 187 3.01E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1996 39092aaf7174312871cafbfacd494ece 227 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 4 164 5.6E-12 T 14-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Thimo_1996 39092aaf7174312871cafbfacd494ece 227 Gene3D G3DSA:3.40.50.300 1 189 1.8E-24 T 14-10-2018 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 322 343 2.6E-51 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 285 306 2.6E-51 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 344 364 2.6E-51 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 263 280 2.6E-51 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 PRINTS PR00481 Cytosol aminopeptidase signature 372 387 2.6E-51 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 Gene3D G3DSA:3.40.630.10 181 496 3.4E-134 T 14-10-2018 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 487 2.8E-122 T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 348 355 - T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 496 38.381 T 14-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 SUPERFAMILY SSF53187 179 494 9.73E-120 T 14-10-2018 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 SUPERFAMILY SSF52949 1 184 9.42E-42 T 14-10-2018 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 Gene3D G3DSA:3.40.220.10 1 160 4.9E-48 T 14-10-2018 Thimo_2320 e3b81821c1c4f900a9975a0192d312f8 499 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 4.0E-25 T 14-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Thimo_1383 571b8a090db616c522e2ae6f46be9c1d 210 Pfam PF03358 NADPH-dependent FMN reductase 44 143 4.2E-11 T 14-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Thimo_1383 571b8a090db616c522e2ae6f46be9c1d 210 SUPERFAMILY SSF52218 3 198 1.4E-60 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Thimo_1383 571b8a090db616c522e2ae6f46be9c1d 210 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 2 201 48.685 T 14-10-2018 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 Thimo_1383 571b8a090db616c522e2ae6f46be9c1d 210 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 197 1.5E-98 T 14-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 Thimo_1383 571b8a090db616c522e2ae6f46be9c1d 210 Gene3D G3DSA:3.40.50.360 1 201 2.0E-75 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Thimo_0450 d30cde3e4be4c503fe0594e0531b005d 222 Gene3D G3DSA:3.30.1060.10 24 206 6.3E-68 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_0450 d30cde3e4be4c503fe0594e0531b005d 222 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 45 205 37.046 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_0450 d30cde3e4be4c503fe0594e0531b005d 222 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 47 197 2.1E-53 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_0450 d30cde3e4be4c503fe0594e0531b005d 222 SUPERFAMILY SSF55068 39 209 1.31E-71 T 14-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_0450 d30cde3e4be4c503fe0594e0531b005d 222 Pfam PF01625 Peptide methionine sulfoxide reductase 47 199 1.5E-61 T 14-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Thimo_2800 503647829d28eff2083e636f6e4fb7d4 244 Pfam PF01618 MotA/TolQ/ExbB proton channel family 93 216 1.7E-28 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Thimo_3710 8bd9287994c50156ee4e31a92ee1fba9 368 Pfam PF13394 4Fe-4S single cluster domain 119 187 1.4E-5 T 14-10-2018 Thimo_3710 8bd9287994c50156ee4e31a92ee1fba9 368 Gene3D G3DSA:3.20.20.70 51 336 1.3E-109 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3710 8bd9287994c50156ee4e31a92ee1fba9 368 Pfam PF04055 Radical SAM superfamily 118 266 3.5E-7 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_3710 8bd9287994c50156ee4e31a92ee1fba9 368 SUPERFAMILY SSF102114 105 346 1.57E-30 T 14-10-2018 Thimo_3710 8bd9287994c50156ee4e31a92ee1fba9 368 Pfam PF12544 Lysine-2,3-aminomutase 310 363 3.9E-19 T 14-10-2018 IPR025895 Lysine-2,3-aminomutase, C-terminal domain Thimo_3710 8bd9287994c50156ee4e31a92ee1fba9 368 PIRSF PIRSF004911 3 367 4.2E-138 T 14-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Thimo_3710 8bd9287994c50156ee4e31a92ee1fba9 368 TIGRFAM TIGR00238 TIGR00238: KamA family protein 10 328 2.6E-91 T 14-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 346 396 9.6E-8 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 49 174 1.1E-22 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 204 337 1.6E-16 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 319 333 8.6E-17 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 62 81 8.6E-17 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 247 269 8.6E-17 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 304 318 8.6E-17 T 14-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 SUPERFAMILY SSF56601 50 396 3.85E-54 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 Gene3D G3DSA:3.40.710.10 215 403 2.3E-34 T 14-10-2018 Thimo_1075 c366f48cae0a5de2a44f6ca58296c2c1 413 Gene3D G3DSA:3.40.710.10 33 110 3.0E-8 T 14-10-2018 Thimo_2232 ab94ec3273751335e98c5ad7d878cb0a 493 Gene3D G3DSA:3.40.50.300 62 310 4.3E-36 T 14-10-2018 Thimo_2232 ab94ec3273751335e98c5ad7d878cb0a 493 Pfam PF00350 Dynamin family 62 217 1.0E-13 T 14-10-2018 IPR022812 Dynamin superfamily Thimo_2232 ab94ec3273751335e98c5ad7d878cb0a 493 SUPERFAMILY SSF52540 58 263 7.6E-19 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3492 5b88558b2638b205a03976a94b701e00 401 Gene3D G3DSA:1.20.1330.10 40 216 4.5E-45 T 14-10-2018 Thimo_3492 5b88558b2638b205a03976a94b701e00 401 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 398 1.4E-80 T 14-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 Thimo_3492 5b88558b2638b205a03976a94b701e00 401 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 138 2.4E-21 T 14-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Thimo_3492 5b88558b2638b205a03976a94b701e00 401 Gene3D G3DSA:1.20.1330.10 239 375 1.4E-13 T 14-10-2018 Thimo_3492 5b88558b2638b205a03976a94b701e00 401 SUPERFAMILY SSF64518 1 400 3.66E-76 T 14-10-2018 Thimo_1162 b2a9da4e4a098effab19f4741d17edf2 257 Pfam PF13614 AAA domain 3 180 6.4E-58 T 14-10-2018 IPR025669 AAA domain Thimo_1162 b2a9da4e4a098effab19f4741d17edf2 257 PIRSF PIRSF009320 93 241 3.2E-8 T 14-10-2018 Thimo_1162 b2a9da4e4a098effab19f4741d17edf2 257 PIRSF PIRSF009320 2 48 3.7E-15 T 14-10-2018 Thimo_1162 b2a9da4e4a098effab19f4741d17edf2 257 SUPERFAMILY SSF52540 1 254 1.59E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1162 b2a9da4e4a098effab19f4741d17edf2 257 Gene3D G3DSA:3.40.50.300 1 256 4.4E-76 T 14-10-2018 Thimo_1136 42251c996f4f01c1b35da010c6c08fe9 369 SUPERFAMILY SSF53187 20 319 6.95E-70 T 14-10-2018 Thimo_1136 42251c996f4f01c1b35da010c6c08fe9 369 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 46 319 1.4E-52 T 14-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 Thimo_1136 42251c996f4f01c1b35da010c6c08fe9 369 PIRSF PIRSF039012 6 326 6.0E-84 T 14-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 Thimo_1136 42251c996f4f01c1b35da010c6c08fe9 369 Gene3D G3DSA:3.40.630.10 18 320 1.9E-89 T 14-10-2018 Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.3E-12 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.3E-12 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.3E-12 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 SUPERFAMILY SSF53850 92 297 1.09E-49 T 14-10-2018 Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 Pfam PF03466 LysR substrate binding domain 90 294 1.1E-55 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 Gene3D G3DSA:3.40.190.290 92 300 8.6E-48 T 14-10-2018 Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.8E-23 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 SUPERFAMILY SSF46785 3 80 6.8E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0764 2e01accea3f991dcfab324385ae530a2 310 Gene3D G3DSA:1.10.10.10 1 86 8.2E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1608 b723d0ce6154b9af4274a6fd8159578a 173 Pfam PF12694 Putative molybdenum carrier 18 158 1.3E-56 T 14-10-2018 IPR024755 Molybdenum cofactor carrier, putative Thimo_1608 b723d0ce6154b9af4274a6fd8159578a 173 Gene3D G3DSA:3.40.50.450 10 161 2.4E-54 T 14-10-2018 Thimo_1608 b723d0ce6154b9af4274a6fd8159578a 173 SUPERFAMILY SSF102405 14 108 7.33E-8 T 14-10-2018 Thimo_0747 a8ff84b2a0f6f7e0405d97568acf1bc3 100 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 93 18.386 T 14-10-2018 IPR003746 Protein of unknown function DUF167 Thimo_0747 a8ff84b2a0f6f7e0405d97568acf1bc3 100 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 81 5.2E-24 T 14-10-2018 IPR003746 Protein of unknown function DUF167 Thimo_0747 a8ff84b2a0f6f7e0405d97568acf1bc3 100 Gene3D G3DSA:3.30.1200.10 1 97 3.1E-28 T 14-10-2018 IPR036591 YggU-like superfamily Thimo_0747 a8ff84b2a0f6f7e0405d97568acf1bc3 100 SMART SM01152 7 83 1.8E-34 T 14-10-2018 IPR003746 Protein of unknown function DUF167 Thimo_0747 a8ff84b2a0f6f7e0405d97568acf1bc3 100 SUPERFAMILY SSF69786 2 86 2.22E-27 T 14-10-2018 IPR036591 YggU-like superfamily Thimo_0747 a8ff84b2a0f6f7e0405d97568acf1bc3 100 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 7 86 1.7E-16 T 14-10-2018 IPR005228 Conserved hypothetical protein CHP00251 Thimo_1626 ef0908ee4b37cf68362e0b3e21e20d0c 91 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 4 90 4.7E-30 T 14-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein Thimo_1626 ef0908ee4b37cf68362e0b3e21e20d0c 91 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 1 90 7.7E-22 T 14-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein Thimo_2814 fca614637a1a76c58a614d2d45764c25 140 SUPERFAMILY SSF47598 6 52 3.56E-12 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Thimo_2814 fca614637a1a76c58a614d2d45764c25 140 Gene3D G3DSA:3.30.70.1150 50 140 6.0E-33 T 14-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Thimo_2814 fca614637a1a76c58a614d2d45764c25 140 SUPERFAMILY SSF55021 57 134 5.49E-25 T 14-10-2018 Thimo_2814 fca614637a1a76c58a614d2d45764c25 140 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 46 6.3E-9 T 14-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Thimo_2814 fca614637a1a76c58a614d2d45764c25 140 Pfam PF08753 NikR C terminal nickel binding domain 59 133 1.1E-29 T 14-10-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal Thimo_2814 fca614637a1a76c58a614d2d45764c25 140 Hamap MF_00476 Nickel-responsive regulator [nikR]. 7 137 28.064 T 14-10-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 Thimo_2814 fca614637a1a76c58a614d2d45764c25 140 Gene3D G3DSA:1.10.1220.10 14 49 5.3E-15 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Thimo_0960 97551bfaa2a04fdee6109f5b6c3130f8 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 25.959 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Thimo_0960 97551bfaa2a04fdee6109f5b6c3130f8 193 PIRSF PIRSF006102 1 193 2.3E-62 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_0960 97551bfaa2a04fdee6109f5b6c3130f8 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 4.0E-88 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Thimo_0960 97551bfaa2a04fdee6109f5b6c3130f8 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 3.2E-61 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_3246 6abb66fa4aee82cea3b2935066c79d1d 285 Pfam PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) 27 281 2.1E-104 T 14-10-2018 IPR009953 Dinitrogenase reductase ADP-ribosyltransferase GO:0009399|GO:0030701 Thimo_3640 a1c2c4d8ca7db8b1e3172803c14d6b20 175 SMART SM00738 15 114 2.1E-17 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Thimo_3640 a1c2c4d8ca7db8b1e3172803c14d6b20 175 SUPERFAMILY SSF50104 121 173 9.93E-6 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Thimo_3640 a1c2c4d8ca7db8b1e3172803c14d6b20 175 SUPERFAMILY SSF82679 16 115 4.05E-26 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Thimo_3640 a1c2c4d8ca7db8b1e3172803c14d6b20 175 Pfam PF02357 Transcription termination factor nusG 17 110 1.9E-19 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Thimo_3640 a1c2c4d8ca7db8b1e3172803c14d6b20 175 Gene3D G3DSA:3.30.70.940 16 175 1.2E-47 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Thimo_3640 a1c2c4d8ca7db8b1e3172803c14d6b20 175 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 18 172 2.3E-46 T 14-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 Thimo_1632 0a0ac6552b81b3c50f29d79eb79c15bf 225 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 14-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Thimo_1632 0a0ac6552b81b3c50f29d79eb79c15bf 225 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 8 192 30.462 T 14-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Thimo_1632 0a0ac6552b81b3c50f29d79eb79c15bf 225 SUPERFAMILY SSF53328 8 199 9.03E-59 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Thimo_1632 0a0ac6552b81b3c50f29d79eb79c15bf 225 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 8 194 1.1E-69 T 14-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Thimo_1632 0a0ac6552b81b3c50f29d79eb79c15bf 225 Pfam PF00551 Formyl transferase 8 186 1.6E-55 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Thimo_1632 0a0ac6552b81b3c50f29d79eb79c15bf 225 Gene3D G3DSA:3.40.50.170 3 209 9.7E-77 T 14-10-2018 Thimo_0228 fcb660a160a6ba29f69fad8323c3f4bf 262 Gene3D G3DSA:3.30.1490.20 74 151 9.4E-7 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_0228 fcb660a160a6ba29f69fad8323c3f4bf 262 Pfam PF08443 RimK-like ATP-grasp domain 89 253 7.2E-14 T 14-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 Thimo_0228 fcb660a160a6ba29f69fad8323c3f4bf 262 Gene3D G3DSA:3.30.470.80 155 260 1.8E-15 T 14-10-2018 Thimo_0228 fcb660a160a6ba29f69fad8323c3f4bf 262 SUPERFAMILY SSF56059 64 254 2.53E-28 T 14-10-2018 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 Gene3D G3DSA:1.25.40.80 133 285 1.2E-82 T 14-10-2018 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 SUPERFAMILY SSF52425 4 208 8.11E-48 T 14-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 Gene3D G3DSA:3.40.50.620 6 204 1.2E-82 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 SUPERFAMILY SSF48173 193 477 2.62E-108 T 14-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 Pfam PF03441 FAD binding domain of DNA photolyase 274 473 5.7E-85 T 14-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 Pfam PF00875 DNA photolyase 5 169 5.2E-46 T 14-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 PRINTS PR00147 DNA photolyase signature 323 339 3.3E-16 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 PRINTS PR00147 DNA photolyase signature 343 361 3.3E-16 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 PRINTS PR00147 DNA photolyase signature 142 158 3.3E-16 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 PRINTS PR00147 DNA photolyase signature 382 396 3.3E-16 T 14-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Thimo_2436 8a49d2d762e11090160185c7e48aef87 479 Gene3D G3DSA:1.10.579.10 292 479 8.1E-82 T 14-10-2018 Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 Pfam PF11104 Type IV pilus assembly protein PilM; 20 361 1.2E-116 T 14-10-2018 IPR005883 Type IV pilus assembly protein PilM Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 SMART SM00842 18 187 0.0019 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 SUPERFAMILY SSF53067 200 361 7.02E-18 T 14-10-2018 Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 SUPERFAMILY SSF53067 68 183 8.2E-12 T 14-10-2018 Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 Gene3D G3DSA:3.30.1490.300 97 155 2.7E-76 T 14-10-2018 Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 16 361 1.1E-97 T 14-10-2018 IPR005883 Type IV pilus assembly protein PilM Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 Gene3D G3DSA:3.30.420.40 19 359 2.7E-76 T 14-10-2018 Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 Gene3D G3DSA:3.30.420.40 198 325 2.7E-76 T 14-10-2018 Thimo_0083 8be415649c4f05076fe0f9da7c72f548 362 PIRSF PIRSF019169 6 362 2.8E-109 T 14-10-2018 IPR005883 Type IV pilus assembly protein PilM Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 Gene3D G3DSA:3.50.50.60 118 244 6.3E-123 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 5.9E-79 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 9 313 2.5E-119 T 14-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 Gene3D G3DSA:3.50.50.60 9 312 6.3E-123 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.0E-39 T 14-10-2018 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.0E-39 T 14-10-2018 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.0E-39 T 14-10-2018 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.0E-39 T 14-10-2018 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.0E-39 T 14-10-2018 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 SUPERFAMILY SSF51905 1 313 6.26E-54 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 14-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Thimo_2447 5185aac204c7cc5bb6947b40cd067273 321 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 302 2.1E-46 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 SMART SM00089 213 291 1.4E-13 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 SMART SM00089 130 208 2.7E-16 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 SUPERFAMILY SSF49299 115 202 3.4E-22 T 14-10-2018 IPR035986 PKD domain superfamily Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 Gene3D G3DSA:2.60.40.10 36 124 2.3E-9 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 Pfam PF00801 PKD domain 217 281 1.0E-8 T 14-10-2018 IPR000601 PKD domain Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 Pfam PF00801 PKD domain 140 198 1.1E-10 T 14-10-2018 IPR000601 PKD domain Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 SUPERFAMILY SSF49265 48 130 4.48E-8 T 14-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 SUPERFAMILY SSF49299 205 290 1.7E-22 T 14-10-2018 IPR035986 PKD domain superfamily Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 Gene3D G3DSA:2.60.40.10 127 206 8.3E-22 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_3094 6dd0b9e6970afdb3a076bfd96d5e26ac 599 Gene3D G3DSA:2.60.40.10 210 290 2.7E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1065 83ff39a8347577b914d62d99c62ce5fd 261 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 10 241 3.2E-69 T 14-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 Thimo_1065 83ff39a8347577b914d62d99c62ce5fd 261 Pfam PF00588 SpoU rRNA Methylase family 12 161 3.3E-32 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Thimo_1065 83ff39a8347577b914d62d99c62ce5fd 261 SUPERFAMILY SSF75217 11 171 3.27E-37 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Thimo_1065 83ff39a8347577b914d62d99c62ce5fd 261 Gene3D G3DSA:1.10.8.590 181 242 1.9E-24 T 14-10-2018 Thimo_1065 83ff39a8347577b914d62d99c62ce5fd 261 Gene3D G3DSA:3.40.1280.10 8 173 7.5E-61 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_1065 83ff39a8347577b914d62d99c62ce5fd 261 PIRSF PIRSF004808 8 247 5.3E-69 T 14-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 Thimo_2393 946685abd4a9f7b0c85758c525f15180 317 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 1 286 6.8E-94 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Thimo_2393 946685abd4a9f7b0c85758c525f15180 317 Pfam PF01715 IPP transferase 31 277 7.6E-80 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Thimo_2393 946685abd4a9f7b0c85758c525f15180 317 Gene3D G3DSA:3.40.50.300 1 282 2.2E-94 T 14-10-2018 Thimo_2393 946685abd4a9f7b0c85758c525f15180 317 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 1 306 26.602 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Thimo_2393 946685abd4a9f7b0c85758c525f15180 317 Gene3D G3DSA:1.10.20.140 104 175 2.2E-94 T 14-10-2018 Thimo_2393 946685abd4a9f7b0c85758c525f15180 317 SUPERFAMILY SSF52540 1 142 8.44E-12 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2424 6e4c391bc6fc0f8745636111d100f7a5 587 Gene3D G3DSA:3.40.640.10 48 308 1.2E-164 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2424 6e4c391bc6fc0f8745636111d100f7a5 587 Gene3D G3DSA:3.90.1010.10 440 581 1.3E-45 T 14-10-2018 Thimo_2424 6e4c391bc6fc0f8745636111d100f7a5 587 Gene3D G3DSA:3.90.1150.10 20 410 1.2E-164 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2424 6e4c391bc6fc0f8745636111d100f7a5 587 SUPERFAMILY SSF53383 16 416 5.84E-123 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2424 6e4c391bc6fc0f8745636111d100f7a5 587 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 19 415 9.5E-166 T 14-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Thimo_2424 6e4c391bc6fc0f8745636111d100f7a5 587 Pfam PF00266 Aminotransferase class-V 37 408 4.0E-139 T 14-10-2018 IPR000192 Aminotransferase class V domain Thimo_2424 6e4c391bc6fc0f8745636111d100f7a5 587 SUPERFAMILY SSF82649 449 580 6.28E-41 T 14-10-2018 Thimo_2424 6e4c391bc6fc0f8745636111d100f7a5 587 Pfam PF02657 Fe-S metabolism associated domain 454 576 2.1E-42 T 14-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like Thimo_1355 8fddf2d72b21b7f46026311c990bab66 55 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 8 46 4.1E-13 T 14-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 Thimo_1355 8fddf2d72b21b7f46026311c990bab66 55 Pfam PF04995 Heme exporter protein D (CcmD) 8 46 3.0E-14 T 14-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 Thimo_1208 bc6671abffe793c341b267b843a5c8d4 195 Pfam PF01965 DJ-1/PfpI family 4 187 1.1E-51 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Thimo_1208 bc6671abffe793c341b267b843a5c8d4 195 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 6 190 2.2E-55 T 14-10-2018 IPR006286 Deglycase PfpI Thimo_1208 bc6671abffe793c341b267b843a5c8d4 195 Gene3D G3DSA:3.40.50.880 1 193 1.1E-53 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1208 bc6671abffe793c341b267b843a5c8d4 195 SUPERFAMILY SSF52317 4 191 6.21E-51 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_2460 67fcf245dac16ad57f708eb2366db313 66 Pfam PF11127 Protein of unknown function (DUF2892) 2 56 2.8E-16 T 14-10-2018 IPR021309 Protein of unknown function DUF2892 Thimo_1079 baa6e9d2d8f46f9b291d64bb4168db92 119 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 1.3E-26 T 14-10-2018 Thimo_1079 baa6e9d2d8f46f9b291d64bb4168db92 119 Gene3D G3DSA:3.30.460.10 1 113 9.4E-38 T 14-10-2018 Thimo_1079 baa6e9d2d8f46f9b291d64bb4168db92 119 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 1.4E-36 T 14-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Thimo_1079 baa6e9d2d8f46f9b291d64bb4168db92 119 SUPERFAMILY SSF81301 1 110 1.28E-38 T 14-10-2018 Thimo_1079 baa6e9d2d8f46f9b291d64bb4168db92 119 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.837 T 14-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Thimo_0863 48024de0859d23f9527bdaf915cf397a 214 Gene3D G3DSA:3.90.550.10 12 214 8.4E-65 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0863 48024de0859d23f9527bdaf915cf397a 214 SUPERFAMILY SSF53448 18 212 3.09E-39 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0863 48024de0859d23f9527bdaf915cf397a 214 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 53 170 1.1E-34 T 14-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated Thimo_0863 48024de0859d23f9527bdaf915cf397a 214 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 16 204 1.8E-63 T 14-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated Thimo_1770 6edcf8462c8a598611f8fe087d3877c3 761 Gene3D G3DSA:3.40.50.300 356 581 5.4E-27 T 14-10-2018 Thimo_1770 6edcf8462c8a598611f8fe087d3877c3 761 Pfam PF13481 AAA domain 347 528 3.2E-25 T 14-10-2018 Thimo_1770 6edcf8462c8a598611f8fe087d3877c3 761 Pfam PF08707 Primase C terminal 2 (PriCT-2) 34 105 5.8E-20 T 14-10-2018 IPR014819 Primase, C-terminal 2 GO:0016817 Thimo_1770 6edcf8462c8a598611f8fe087d3877c3 761 SUPERFAMILY SSF52540 364 564 1.5E-5 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0912 a917754bae694107e294d239d7f7792f 281 SUPERFAMILY SSF53098 116 277 2.91E-48 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0912 a917754bae694107e294d239d7f7792f 281 Gene3D G3DSA:3.30.420.10 113 267 2.2E-16 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_0912 a917754bae694107e294d239d7f7792f 281 Pfam PF13276 HTH-like domain 40 96 1.8E-15 T 14-10-2018 IPR025948 HTH-like domain Thimo_0912 a917754bae694107e294d239d7f7792f 281 Pfam PF00665 Integrase core domain 118 229 4.6E-23 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 450 42.27 T 14-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 Gene3D G3DSA:3.90.550.10 2 225 3.1E-62 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 Pfam PF12804 MobA-like NTP transferase domain 6 122 3.2E-23 T 14-10-2018 IPR025877 MobA-like NTP transferase Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 316 350 0.0023 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 297 1.6E-5 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 393 426 4.5E-8 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 5 452 9.9E-189 T 14-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 SUPERFAMILY SSF51161 253 434 7.89E-50 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 SUPERFAMILY SSF53448 1 250 1.79E-61 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1173 966670d83a50244df0dda97991cb0ac6 456 Gene3D G3DSA:2.160.10.10 226 453 6.4E-66 T 14-10-2018 Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.3E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 5.3E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 5.3E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 5.3E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 5.3E-29 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 Gene3D G3DSA:3.40.50.720 2 236 1.8E-75 T 14-10-2018 Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 1.2E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.2E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.2E-9 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 Pfam PF00106 short chain dehydrogenase 6 200 1.2E-47 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_3634 f2264315974bcd7d09bb62b33b4ab473 237 SUPERFAMILY SSF51735 6 237 3.12E-63 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 SUPERFAMILY SSF47384 345 425 1.0E-10 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 Pfam PF00512 His Kinase A (phospho-acceptor) domain 361 424 7.8E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 531 3.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 532 550 3.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 517 3.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 560 573 3.4E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 SMART SM00304 295 347 7.5E-16 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 SUPERFAMILY SSF158472 295 344 2.09E-11 T 14-10-2018 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 Gene3D G3DSA:1.10.287.130 350 424 5.1E-14 T 14-10-2018 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 Gene3D G3DSA:3.30.565.10 426 580 2.0E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 SUPERFAMILY SSF55874 416 572 1.28E-28 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 SMART SM00388 360 425 9.6E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 Gene3D G3DSA:1.20.1480.50 263 349 3.0E-12 T 14-10-2018 Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 465 571 1.1E-13 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 SMART SM00387 465 576 6.8E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_0822 6074ef8391e101027fd6ec00903c34a5 582 Pfam PF00672 HAMP domain 295 344 2.7E-14 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_1051 bcf6a109906c11fba75b9806b30ee76b 277 Gene3D G3DSA:2.40.50.140 175 277 1.1E-6 T 14-10-2018 Thimo_1051 bcf6a109906c11fba75b9806b30ee76b 277 Gene3D G3DSA:3.40.50.1010 4 164 3.1E-30 T 14-10-2018 Thimo_1051 bcf6a109906c11fba75b9806b30ee76b 277 Pfam PF01936 NYN domain 6 161 4.8E-29 T 14-10-2018 IPR021139 NYN domain, limkain-b1-type Thimo_2135 9a5a6bbae1e755f95d726111477cf420 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 146 1.5E-46 T 14-10-2018 IPR003791 Protein of unknown function UPF0178 Thimo_2135 9a5a6bbae1e755f95d726111477cf420 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.601 T 14-10-2018 IPR003791 Protein of unknown function UPF0178 Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 175 191 3.1E-5 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 191 206 3.1E-5 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 Gene3D G3DSA:2.60.120.10 9 150 4.9E-40 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 Pfam PF00027 Cyclic nucleotide-binding domain 37 118 7.5E-8 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 Gene3D G3DSA:1.10.10.10 151 224 1.2E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 SUPERFAMILY SSF51206 12 152 1.96E-23 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 SMART SM00419 169 217 1.6E-9 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 SUPERFAMILY SSF46785 155 224 3.54E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3329 d85cc78b00eab75d6cdda926bbe4e01f 229 Pfam PF13545 Crp-like helix-turn-helix domain 157 223 1.6E-16 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_1952 0b38c8e6eba70e0936afecfd78a87fb7 175 Gene3D G3DSA:3.30.1380.10 51 175 5.7E-10 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_1952 0b38c8e6eba70e0936afecfd78a87fb7 175 SUPERFAMILY SSF55166 57 173 3.66E-31 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_1952 0b38c8e6eba70e0936afecfd78a87fb7 175 Pfam PF05951 Bacterial protein of unknown function (DUF882) 25 173 8.3E-55 T 14-10-2018 IPR010275 Protein of unknown function DUF882 Thimo_0043 ac99bcc42e4ef7208e171597a4ebcf35 327 SUPERFAMILY SSF53795 138 300 2.14E-31 T 14-10-2018 Thimo_0043 ac99bcc42e4ef7208e171597a4ebcf35 327 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 2 308 33.688 T 14-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Thimo_0043 ac99bcc42e4ef7208e171597a4ebcf35 327 SUPERFAMILY SSF75138 4 132 7.46E-28 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Thimo_0043 ac99bcc42e4ef7208e171597a4ebcf35 327 Pfam PF02603 HPr Serine kinase N terminus 4 129 2.3E-30 T 14-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Thimo_0043 ac99bcc42e4ef7208e171597a4ebcf35 327 Gene3D G3DSA:3.40.1390.20 3 132 7.8E-33 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Thimo_0043 ac99bcc42e4ef7208e171597a4ebcf35 327 Gene3D G3DSA:3.40.50.300 133 318 2.7E-60 T 14-10-2018 Thimo_0043 ac99bcc42e4ef7208e171597a4ebcf35 327 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 4 304 2.3E-97 T 14-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Thimo_0043 ac99bcc42e4ef7208e171597a4ebcf35 327 Pfam PF07475 HPr Serine kinase C-terminal domain 132 300 2.6E-60 T 14-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Thimo_0285 dd90889c44fb62f298529e14251f6cdd 403 SUPERFAMILY SSF52540 183 367 1.52E-30 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0285 dd90889c44fb62f298529e14251f6cdd 403 Gene3D G3DSA:1.20.120.1380 146 367 1.0E-51 T 14-10-2018 Thimo_0285 dd90889c44fb62f298529e14251f6cdd 403 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 275 3.1E-67 T 14-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 Thimo_0285 dd90889c44fb62f298529e14251f6cdd 403 Gene3D G3DSA:3.40.50.300 183 366 1.0E-51 T 14-10-2018 Thimo_0285 dd90889c44fb62f298529e14251f6cdd 403 SMART SM00962 187 378 1.2E-45 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_0285 dd90889c44fb62f298529e14251f6cdd 403 Pfam PF00448 SRP54-type protein, GTPase domain 189 374 1.1E-32 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Thimo_0285 dd90889c44fb62f298529e14251f6cdd 403 SMART SM00382 186 329 3.6E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 SMART SM00244 21 184 4.1E-36 T 14-10-2018 IPR001107 Band 7 domain Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 TIGRFAM TIGR01932 hflC: HflC protein 154 283 5.9E-46 T 14-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 SUPERFAMILY SSF117892 53 190 3.53E-30 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 Gene3D G3DSA:3.30.479.30 50 186 2.5E-25 T 14-10-2018 Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 PRINTS PR00721 Stomatin signature 28 50 3.6E-7 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 PRINTS PR00721 Stomatin signature 76 97 3.6E-7 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 PRINTS PR00721 Stomatin signature 179 200 3.6E-7 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 PRINTS PR00721 Stomatin signature 160 178 3.6E-7 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 Pfam PF01145 SPFH domain / Band 7 family 25 197 6.1E-31 T 14-10-2018 IPR001107 Band 7 domain Thimo_2389 4efaa1590b10e0264bb0a8285a542246 289 PIRSF PIRSF005651 1 289 1.1E-90 T 14-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Thimo_2426 f663fd46b04575e8d3d952d70183c95a 72 Gene3D G3DSA:3.30.70.1680 1 60 1.2E-29 T 14-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 Thimo_2426 f663fd46b04575e8d3d952d70183c95a 72 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 49 7.0E-20 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Thimo_2426 f663fd46b04575e8d3d952d70183c95a 72 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 58 9.6E-29 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Thimo_2426 f663fd46b04575e8d3d952d70183c95a 72 SUPERFAMILY SSF117130 1 54 1.57E-20 T 14-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 Thimo_2426 f663fd46b04575e8d3d952d70183c95a 72 Pfam PF02599 Global regulator protein family 1 52 2.4E-26 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Thimo_2426 f663fd46b04575e8d3d952d70183c95a 72 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 65 17.643 T 14-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Thimo_0993 120299c226114d4a8cfe439ae4edc74d 318 SUPERFAMILY SSF53335 61 246 6.19E-22 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0993 120299c226114d4a8cfe439ae4edc74d 318 Pfam PF08241 Methyltransferase domain 88 177 1.4E-11 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_0993 120299c226114d4a8cfe439ae4edc74d 318 Gene3D G3DSA:3.40.50.150 37 238 6.2E-20 T 14-10-2018 Thimo_2292 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 Pfam PF01966 HD domain 27 149 2.0E-23 T 14-10-2018 IPR006674 HD domain Thimo_2292 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 Gene3D G3DSA:1.10.3210.10 9 197 1.9E-64 T 14-10-2018 Thimo_2292 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 SUPERFAMILY SSF109604 18 186 2.24E-40 T 14-10-2018 Thimo_2292 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 TIGRFAM TIGR00277 HDIG: HDIG domain 25 117 3.6E-9 T 14-10-2018 IPR006675 HDIG domain Thimo_2292 dd2c3c4e1a33b6e6d4a7dc501ff1401a 237 SMART SM00471 23 158 3.0E-16 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_0041 8ba0da011e2a58bc705f29dc7db9abfa 249 SUPERFAMILY SSF52540 7 217 1.31E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0041 8ba0da011e2a58bc705f29dc7db9abfa 249 SMART SM00382 35 219 2.8E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0041 8ba0da011e2a58bc705f29dc7db9abfa 249 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0041 8ba0da011e2a58bc705f29dc7db9abfa 249 Pfam PF00005 ABC transporter 27 172 1.1E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0041 8ba0da011e2a58bc705f29dc7db9abfa 249 Gene3D G3DSA:3.40.50.300 4 247 4.7E-57 T 14-10-2018 Thimo_3767 c6fec6c1effaee3d4db31695402fff3c 222 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 21 169 1.7E-14 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Thimo_3767 c6fec6c1effaee3d4db31695402fff3c 222 SUPERFAMILY SSF52540 17 199 1.12E-27 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3767 c6fec6c1effaee3d4db31695402fff3c 222 Gene3D G3DSA:3.40.50.300 17 211 6.6E-32 T 14-10-2018 Thimo_3696 ff34fe04ed146d5c11fbaf89fbf939c7 249 PIRSF PIRSF030802 3 244 5.1E-41 T 14-10-2018 IPR024197 Uncharacterised conserved protein UCP030802 Thimo_3696 ff34fe04ed146d5c11fbaf89fbf939c7 249 SUPERFAMILY SSF56784 9 230 1.21E-16 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0040 3fced8ebf491e103ade83caecec6b3c3 294 Gene3D G3DSA:1.10.3470.10 16 271 1.2E-6 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Thimo_0040 3fced8ebf491e103ade83caecec6b3c3 294 SUPERFAMILY SSF81345 11 262 1.96E-37 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Thimo_0040 3fced8ebf491e103ade83caecec6b3c3 294 Pfam PF00950 ABC 3 transport family 12 266 6.8E-71 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Thimo_2801 55668e176ed9418de1e9d23f1d158ed5 136 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 121 1.6E-16 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Thimo_2801 55668e176ed9418de1e9d23f1d158ed5 136 Gene3D G3DSA:3.30.420.270 57 122 6.0E-5 T 14-10-2018 Thimo_0118 37abe2418a7c5ef472c981280f5d96cd 200 Pfam PF05685 Putative restriction endonuclease 11 133 5.1E-20 T 14-10-2018 IPR008538 Domain of unknown function DUF820 Thimo_0118 37abe2418a7c5ef472c981280f5d96cd 200 Gene3D G3DSA:3.90.1570.10 2 134 5.1E-13 T 14-10-2018 Thimo_0118 37abe2418a7c5ef472c981280f5d96cd 200 SUPERFAMILY SSF52980 2 134 2.2E-18 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_1066 60c011623ec38e10c3ba36670087952f 270 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 126 154 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Thimo_1066 60c011623ec38e10c3ba36670087952f 270 Pfam PF06426 Serine acetyltransferase, N-terminal 3 35 4.1E-5 T 14-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 Thimo_1066 60c011623ec38e10c3ba36670087952f 270 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 165 1.3E-73 T 14-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 Thimo_1066 60c011623ec38e10c3ba36670087952f 270 Gene3D G3DSA:1.10.3130.10 1 66 1.9E-24 T 14-10-2018 Thimo_1066 60c011623ec38e10c3ba36670087952f 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 73 108 3.6E-4 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1066 60c011623ec38e10c3ba36670087952f 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 151 1.4E-7 T 14-10-2018 IPR001451 Hexapeptide repeat Thimo_1066 60c011623ec38e10c3ba36670087952f 270 Gene3D G3DSA:2.160.10.10 67 188 9.8E-36 T 14-10-2018 Thimo_1066 60c011623ec38e10c3ba36670087952f 270 SUPERFAMILY SSF51161 2 172 6.24E-54 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Thimo_2841 c9e171e6d9b50d406d3c57e61bcdb5c5 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 143 18.619 T 14-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 Thimo_2841 c9e171e6d9b50d406d3c57e61bcdb5c5 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 7.8E-28 T 14-10-2018 IPR021131 Ribosomal protein L18e/L15P Thimo_2841 c9e171e6d9b50d406d3c57e61bcdb5c5 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 1.2E-45 T 14-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2841 c9e171e6d9b50d406d3c57e61bcdb5c5 144 Gene3D G3DSA:3.100.10.10 74 144 1.5E-13 T 14-10-2018 Thimo_2841 c9e171e6d9b50d406d3c57e61bcdb5c5 144 SUPERFAMILY SSF52080 4 143 9.81E-44 T 14-10-2018 IPR036227 Ribosomal L18e/L15P superfamily Thimo_2841 c9e171e6d9b50d406d3c57e61bcdb5c5 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 14-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_3596 f7e62115987152ece8000f717400e9b2 293 Pfam PF04940 Sensors of blue-light using FAD 1 92 3.9E-32 T 14-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 Thimo_3596 f7e62115987152ece8000f717400e9b2 293 Pfam PF06146 Phosphate-starvation-inducible E 210 277 9.2E-19 T 14-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like Thimo_3596 f7e62115987152ece8000f717400e9b2 293 SMART SM01034 1 93 1.1E-47 T 14-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 Thimo_3596 f7e62115987152ece8000f717400e9b2 293 Gene3D G3DSA:3.30.70.3200 1 142 6.7E-39 T 14-10-2018 Thimo_3596 f7e62115987152ece8000f717400e9b2 293 SUPERFAMILY SSF54975 1 136 8.94E-39 T 14-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Thimo_2001 b11ff9eb7b69f610a20790408b57b0dc 254 Gene3D G3DSA:2.160.20.70 147 254 4.7E-30 T 14-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 Thimo_2001 b11ff9eb7b69f610a20790408b57b0dc 254 Gene3D G3DSA:3.30.750.120 5 117 4.9E-29 T 14-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily Thimo_2001 b11ff9eb7b69f610a20790408b57b0dc 254 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 8 254 3.6E-67 T 14-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Thimo_2001 b11ff9eb7b69f610a20790408b57b0dc 254 SUPERFAMILY SSF63848 150 254 1.22E-29 T 14-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 Thimo_2001 b11ff9eb7b69f610a20790408b57b0dc 254 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 152 252 1.8E-29 T 14-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 Thimo_2001 b11ff9eb7b69f610a20790408b57b0dc 254 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 8 107 3.8E-19 T 14-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 Thimo_2001 b11ff9eb7b69f610a20790408b57b0dc 254 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 8 254 25.502 T 14-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 SUPERFAMILY SSF90123 19 332 3.66E-53 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 SMART SM00382 371 557 1.1E-21 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 Pfam PF00005 ABC transporter 362 511 1.3E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 SUPERFAMILY SSF52540 341 581 5.94E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 Gene3D G3DSA:1.20.1560.10 12 331 1.9E-48 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 Gene3D G3DSA:3.40.50.300 342 587 5.2E-91 T 14-10-2018 Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 Pfam PF00664 ABC transporter transmembrane region 28 289 5.0E-29 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Thimo_0358 203a8d59a7383a922f94f3e2b229074f 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 23 553 6.1E-199 T 14-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 Thimo_1927 0bed5636b8328d368e1eff0921bc9cb1 362 Gene3D G3DSA:3.80.30.30 108 282 8.2E-8 T 14-10-2018 Thimo_1927 0bed5636b8328d368e1eff0921bc9cb1 362 SMART SM00729 65 282 2.3E-4 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_1927 0bed5636b8328d368e1eff0921bc9cb1 362 Pfam PF04055 Radical SAM superfamily 70 246 2.4E-13 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_1927 0bed5636b8328d368e1eff0921bc9cb1 362 SUPERFAMILY SSF102114 53 265 5.89E-12 T 14-10-2018 Thimo_3613 e73ef611c46a264c433fdd725b88677f 179 Gene3D G3DSA:2.40.70.10 56 177 1.1E-31 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily Thimo_3613 e73ef611c46a264c433fdd725b88677f 179 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 84 95 - T 14-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 Thimo_3613 e73ef611c46a264c433fdd725b88677f 179 Pfam PF13975 gag-polyprotein putative aspartyl protease 75 162 7.8E-24 T 14-10-2018 Thimo_3613 e73ef611c46a264c433fdd725b88677f 179 SUPERFAMILY SSF50630 63 165 3.0E-20 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily Thimo_3613 e73ef611c46a264c433fdd725b88677f 179 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 61 175 3.6E-28 T 14-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal Thimo_3464 15c77a84dffab3737d6c3610a85ed16b 424 Gene3D G3DSA:3.20.20.190 74 417 6.7E-37 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Thimo_3464 15c77a84dffab3737d6c3610a85ed16b 424 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 80 411 8.7E-21 T 14-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Thimo_3464 15c77a84dffab3737d6c3610a85ed16b 424 SUPERFAMILY SSF51695 75 417 2.22E-57 T 14-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Thimo_2149 208c025058bb62324429de6b0a7fada6 407 Pfam PF13519 von Willebrand factor type A domain 59 171 8.0E-10 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_2149 208c025058bb62324429de6b0a7fada6 407 SUPERFAMILY SSF53300 57 230 8.75E-24 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_2149 208c025058bb62324429de6b0a7fada6 407 Gene3D G3DSA:3.40.50.410 55 237 2.6E-19 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_2149 208c025058bb62324429de6b0a7fada6 407 SMART SM00327 55 237 2.6E-15 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_1536 a467300a3218f7a4d1f44ffa4c68aee5 263 SMART SM00382 49 236 1.2E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1536 a467300a3218f7a4d1f44ffa4c68aee5 263 PIRSF PIRSF039085 21 263 5.0E-111 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Thimo_1536 a467300a3218f7a4d1f44ffa4c68aee5 263 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1536 a467300a3218f7a4d1f44ffa4c68aee5 263 SUPERFAMILY SSF52540 24 258 9.2E-82 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1536 a467300a3218f7a4d1f44ffa4c68aee5 263 Pfam PF00005 ABC transporter 40 188 1.5E-38 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1536 a467300a3218f7a4d1f44ffa4c68aee5 263 Gene3D G3DSA:3.40.50.300 22 263 7.8E-80 T 14-10-2018 Thimo_1698 b082800efc084d58884c0e2d5cc08b15 415 SUPERFAMILY SSF47240 69 388 7.16E-95 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_1698 b082800efc084d58884c0e2d5cc08b15 415 Gene3D G3DSA:1.10.620.20 78 408 2.1E-110 T 14-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 Thimo_1698 b082800efc084d58884c0e2d5cc08b15 415 Pfam PF00268 Ribonucleotide reductase, small chain 95 382 2.9E-82 T 14-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1698 b082800efc084d58884c0e2d5cc08b15 415 PIRSF PIRSF000355 69 415 8.6E-136 T 14-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 Gene3D G3DSA:1.20.1440.90 282 414 4.3E-11 T 14-10-2018 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 578 590 - T 14-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 Pfam PF00311 Phosphoenolpyruvate carboxylase 139 929 4.2E-280 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 SUPERFAMILY SSF51621 11 929 1.88E-287 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 141 152 - T 14-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 193 209 3.6E-60 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 618 647 3.6E-60 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 140 153 3.6E-60 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 596 3.6E-60 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 754 780 3.6E-60 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 253 268 3.6E-60 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 411 431 3.6E-60 T 14-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1264 731f92a41adfc12bb8fc68fc8b07be47 929 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 929 17.164 T 14-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Thimo_1476 7fc7f374e8f4171a335f4d401ab08802 710 SUPERFAMILY SSF55486 220 440 3.37E-44 T 14-10-2018 Thimo_1476 7fc7f374e8f4171a335f4d401ab08802 710 Pfam PF01433 Peptidase family M1 domain 293 431 1.2E-11 T 14-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Thimo_1476 7fc7f374e8f4171a335f4d401ab08802 710 Gene3D G3DSA:1.10.390.60 216 436 1.1E-30 T 14-10-2018 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.964 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 Pfam PF01632 Ribosomal protein L35 2 62 5.7E-21 T 14-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 14-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.9E-16 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.9E-16 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.9E-16 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 SUPERFAMILY SSF143034 2 64 2.09E-20 T 14-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 7.0E-23 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Thimo_2826 b0c270ff82a165986d9d3c30830d11d1 65 Gene3D G3DSA:2.40.50.530 1 64 4.3E-18 T 14-10-2018 Thimo_0045 085cdaa6583eb70b879744da20f0951b 403 Gene3D G3DSA:1.20.81.30 54 172 5.7E-29 T 14-10-2018 Thimo_0045 085cdaa6583eb70b879744da20f0951b 403 Pfam PF00482 Type II secretion system (T2SS), protein F 272 393 2.7E-25 T 14-10-2018 IPR018076 Type II secretion system F domain Thimo_0045 085cdaa6583eb70b879744da20f0951b 403 Pfam PF00482 Type II secretion system (T2SS), protein F 70 192 3.9E-29 T 14-10-2018 IPR018076 Type II secretion system F domain Thimo_0045 085cdaa6583eb70b879744da20f0951b 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 367 381 6.7E-20 T 14-10-2018 IPR003004 GspF/PilC family Thimo_0045 085cdaa6583eb70b879744da20f0951b 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 65 77 6.7E-20 T 14-10-2018 IPR003004 GspF/PilC family Thimo_0045 085cdaa6583eb70b879744da20f0951b 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 383 402 6.7E-20 T 14-10-2018 IPR003004 GspF/PilC family Thimo_0045 085cdaa6583eb70b879744da20f0951b 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 164 192 6.7E-20 T 14-10-2018 IPR003004 GspF/PilC family Thimo_0045 085cdaa6583eb70b879744da20f0951b 403 Gene3D G3DSA:1.20.81.30 256 366 4.4E-27 T 14-10-2018 Thimo_0128 c4545f3565283cf40c67fdf2843e49f4 155 Pfam PF00011 Hsp20/alpha crystallin family 42 136 1.0E-19 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Thimo_0128 c4545f3565283cf40c67fdf2843e49f4 155 Gene3D G3DSA:2.60.40.790 33 137 9.3E-23 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_0128 c4545f3565283cf40c67fdf2843e49f4 155 SUPERFAMILY SSF49764 10 137 1.5E-22 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 SMART SM00388 164 232 6.4E-9 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 SUPERFAMILY SSF55874 236 387 5.24E-31 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 Pfam PF00512 His Kinase A (phospho-acceptor) domain 166 231 6.0E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 SUPERFAMILY SSF47384 160 231 1.1E-10 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 Gene3D G3DSA:1.10.287.130 151 233 4.4E-9 T 14-10-2018 Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 387 1.1E-16 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 Gene3D G3DSA:3.30.565.10 237 394 1.2E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 369 9.5E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 347 9.5E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 388 9.5E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 333 9.5E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 SMART SM00387 274 391 5.6E-22 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_1387 8f2a2db7a032fccef9610a291b659523 419 Pfam PF14361 RsbT co-antagonist protein rsbRD N-terminal domain 14 112 1.4E-5 T 14-10-2018 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain Thimo_3683 a31aff7c9bdcfd92d314a4cc206bc2f0 396 Gene3D G3DSA:1.20.1510.10 19 218 1.3E-58 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Thimo_3683 a31aff7c9bdcfd92d314a4cc206bc2f0 396 Gene3D G3DSA:3.30.70.1350 223 302 4.7E-20 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Thimo_3683 a31aff7c9bdcfd92d314a4cc206bc2f0 396 SUPERFAMILY SSF160240 223 303 2.88E-19 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Thimo_3683 a31aff7c9bdcfd92d314a4cc206bc2f0 396 Pfam PF16916 Dimerisation domain of Zinc Transporter 225 301 1.7E-22 T 14-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain Thimo_3683 a31aff7c9bdcfd92d314a4cc206bc2f0 396 SUPERFAMILY SSF161111 18 219 1.24E-52 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Thimo_3683 a31aff7c9bdcfd92d314a4cc206bc2f0 396 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 21 302 2.4E-67 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Thimo_3683 a31aff7c9bdcfd92d314a4cc206bc2f0 396 Pfam PF01545 Cation efflux family 26 218 1.0E-47 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 Gene3D G3DSA:3.40.50.261 240 386 5.0E-56 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 14-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 Gene3D G3DSA:3.30.1490.20 21 104 8.1E-95 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 Pfam PF08442 ATP-grasp domain 2 202 1.0E-78 T 14-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 Gene3D G3DSA:3.30.470.20 1 234 8.1E-95 T 14-10-2018 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.024 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 Pfam PF00549 CoA-ligase 262 382 1.6E-24 T 14-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 PIRSF PIRSF001554 1 386 7.3E-151 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 SUPERFAMILY SSF56059 1 238 2.16E-83 T 14-10-2018 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 7.7E-158 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Thimo_0241 46cb4b929ac3535f38bd00b5246c204c 386 SUPERFAMILY SSF52210 241 384 2.22E-52 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Thimo_0273 11bcc596562248d205b82b34671bc8e6 457 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 360 369 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_0273 11bcc596562248d205b82b34671bc8e6 457 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 159 369 4.4E-72 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_0273 11bcc596562248d205b82b34671bc8e6 457 Gene3D G3DSA:3.40.50.12240 28 452 3.8E-151 T 14-10-2018 Thimo_0273 11bcc596562248d205b82b34671bc8e6 457 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 36 447 9.0E-193 T 14-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_0273 11bcc596562248d205b82b34671bc8e6 457 SUPERFAMILY SSF52540 106 374 1.17E-94 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0273 11bcc596562248d205b82b34671bc8e6 457 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 17 449 1.0E-173 T 14-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_0273 11bcc596562248d205b82b34671bc8e6 457 SMART SM00382 171 353 5.7E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3540 1941666a8ef7ac1405753fb7a93e7b77 193 Pfam PF09626 Dihaem cytochrome c 50 178 4.5E-33 T 14-10-2018 IPR018588 Dihaem cytochrome c Thimo_1304 e596067ce7d881fb6fd9076906872d96 290 Gene3D G3DSA:1.10.3660.10 179 283 1.4E-36 T 14-10-2018 Thimo_1304 e596067ce7d881fb6fd9076906872d96 290 SUPERFAMILY SSF51735 4 171 5.51E-52 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1304 e596067ce7d881fb6fd9076906872d96 290 SUPERFAMILY SSF48179 177 283 4.08E-35 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_1304 e596067ce7d881fb6fd9076906872d96 290 Pfam PF02153 Prephenate dehydrogenase 17 273 4.7E-76 T 14-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 Thimo_1304 e596067ce7d881fb6fd9076906872d96 290 Gene3D G3DSA:3.40.50.720 2 178 5.4E-56 T 14-10-2018 Thimo_0442 1431fd781ebb77da89082e6d32eb459b 268 Gene3D G3DSA:1.10.472.150 23 145 1.6E-43 T 14-10-2018 Thimo_0442 1431fd781ebb77da89082e6d32eb459b 268 Gene3D G3DSA:3.40.390.10 147 262 1.4E-41 T 14-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 Thimo_0442 1431fd781ebb77da89082e6d32eb459b 268 Pfam PF06167 Glucose-regulated metallo-peptidase M90 6 248 4.3E-91 T 14-10-2018 IPR010384 MtfA family Thimo_0442 1431fd781ebb77da89082e6d32eb459b 268 SUPERFAMILY SSF55486 45 250 4.61E-45 T 14-10-2018 Thimo_1932 dd211bc3de4cd3ba9d27728c032b3c30 352 Gene3D G3DSA:2.40.420.20 264 332 2.0E-71 T 14-10-2018 Thimo_1932 dd211bc3de4cd3ba9d27728c032b3c30 352 Gene3D G3DSA:2.40.50.100 53 181 2.0E-71 T 14-10-2018 Thimo_1932 dd211bc3de4cd3ba9d27728c032b3c30 352 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 334 4.9E-71 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1932 dd211bc3de4cd3ba9d27728c032b3c30 352 Gene3D G3DSA:1.10.287.470 88 147 2.0E-71 T 14-10-2018 Thimo_1932 dd211bc3de4cd3ba9d27728c032b3c30 352 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 39 252 1.5E-24 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Thimo_1932 dd211bc3de4cd3ba9d27728c032b3c30 352 Gene3D G3DSA:2.40.30.170 42 263 2.0E-71 T 14-10-2018 Thimo_1932 dd211bc3de4cd3ba9d27728c032b3c30 352 SUPERFAMILY SSF111369 43 259 3.53E-36 T 14-10-2018 Thimo_2106 194f661597c94d2e9a4c3128e1d2a1df 121 Pfam PF11964 SpoIIAA-like 12 118 5.7E-22 T 14-10-2018 IPR021866 SpoIIAA-like Thimo_2106 194f661597c94d2e9a4c3128e1d2a1df 121 Gene3D G3DSA:3.40.50.10600 1 119 5.4E-39 T 14-10-2018 IPR038396 SpoIIAA-like superfamily Thimo_2106 194f661597c94d2e9a4c3128e1d2a1df 121 SUPERFAMILY SSF52091 1 118 3.34E-36 T 14-10-2018 IPR036513 STAS domain superfamily Thimo_2608 745eac67e2ff3d77d16e69a559585f02 170 Pfam PF01661 Macro domain 21 133 3.9E-41 T 14-10-2018 IPR002589 Macro domain Thimo_2608 745eac67e2ff3d77d16e69a559585f02 170 Gene3D G3DSA:3.40.220.10 2 169 3.8E-69 T 14-10-2018 Thimo_2608 745eac67e2ff3d77d16e69a559585f02 170 SUPERFAMILY SSF52949 4 168 8.92E-60 T 14-10-2018 Thimo_2608 745eac67e2ff3d77d16e69a559585f02 170 SMART SM00506 4 133 1.2E-44 T 14-10-2018 IPR002589 Macro domain Thimo_1519 e9fd07e186c3b15850b77ec924ecfe2a 751 SMART SM00155 148 175 42.0 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Thimo_1519 e9fd07e186c3b15850b77ec924ecfe2a 751 SMART SM00155 368 395 0.035 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Thimo_1519 e9fd07e186c3b15850b77ec924ecfe2a 751 SUPERFAMILY SSF56024 25 263 2.08E-29 T 14-10-2018 Thimo_1519 e9fd07e186c3b15850b77ec924ecfe2a 751 Gene3D G3DSA:3.30.870.10 29 235 1.2E-22 T 14-10-2018 Thimo_1519 e9fd07e186c3b15850b77ec924ecfe2a 751 Gene3D G3DSA:3.30.870.10 269 428 1.8E-18 T 14-10-2018 Thimo_1519 e9fd07e186c3b15850b77ec924ecfe2a 751 Pfam PF09335 SNARE associated Golgi protein 581 695 1.7E-19 T 14-10-2018 IPR032816 SNARE associated Golgi protein Thimo_1519 e9fd07e186c3b15850b77ec924ecfe2a 751 Pfam PF13091 PLD-like domain 281 412 4.8E-12 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Thimo_1519 e9fd07e186c3b15850b77ec924ecfe2a 751 SUPERFAMILY SSF56024 216 432 1.02E-24 T 14-10-2018 Thimo_3543 0943ed0b0bc47b190c2107c67e8c961b 290 Gene3D G3DSA:3.40.50.10880 135 281 2.9E-49 T 14-10-2018 Thimo_3543 0943ed0b0bc47b190c2107c67e8c961b 290 Gene3D G3DSA:1.10.285.20 68 133 1.1E-16 T 14-10-2018 Thimo_3543 0943ed0b0bc47b190c2107c67e8c961b 290 Pfam PF01937 Protein of unknown function DUF89 6 269 2.9E-48 T 14-10-2018 IPR002791 Domain of unknown function DUF89 Thimo_3543 0943ed0b0bc47b190c2107c67e8c961b 290 PIRSF PIRSF006593 1 281 1.2E-81 T 14-10-2018 IPR014444 Uncharacterised conserved protein UCP006593 Thimo_3543 0943ed0b0bc47b190c2107c67e8c961b 290 SUPERFAMILY SSF111321 1 278 1.57E-76 T 14-10-2018 IPR036075 AF1104-like superfamily Thimo_3502 242778150944e5e6d8fc6008295e61d3 132 Pfam PF00460 Flagella basal body rod protein 15 39 4.2E-7 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Thimo_3502 242778150944e5e6d8fc6008295e61d3 132 PIRSF PIRSF002889 1 132 1.8E-39 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Thimo_3502 242778150944e5e6d8fc6008295e61d3 132 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 9 130 2.5E-31 T 14-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 SMART SM00382 159 302 3.6E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 SMART SM00448 5 116 2.7E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 Gene3D G3DSA:3.40.50.2300 3 123 1.0E-39 T 14-10-2018 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 7 461 5.6E-223 T 14-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 Pfam PF02954 Bacterial regulatory protein, Fis family 422 461 6.3E-15 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 Gene3D G3DSA:1.10.10.60 383 464 4.6E-23 T 14-10-2018 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 Pfam PF00072 Response regulator receiver domain 7 115 8.7E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 Gene3D G3DSA:1.10.8.60 311 382 1.2E-19 T 14-10-2018 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 Gene3D G3DSA:3.40.50.300 129 310 2.4E-67 T 14-10-2018 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 SUPERFAMILY SSF46689 379 464 2.33E-19 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 427 444 2.6E-9 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 464 2.6E-9 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 SUPERFAMILY SSF52540 138 382 5.33E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 Pfam PF00158 Sigma-54 interaction domain 139 306 3.2E-71 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 SUPERFAMILY SSF52172 4 184 1.11E-44 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_3679 6a4b17048347b91e0bfb16bc48ee6371 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0756 30132eaa906e11eedb0fafed0ade7553 95 SUPERFAMILY SSF63562 1 75 1.57E-24 T 14-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Thimo_0756 30132eaa906e11eedb0fafed0ade7553 95 Pfam PF01192 RNA polymerase Rpb6 8 59 5.2E-16 T 14-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Thimo_0756 30132eaa906e11eedb0fafed0ade7553 95 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 17.682 T 14-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_0756 30132eaa906e11eedb0fafed0ade7553 95 Gene3D G3DSA:3.90.940.10 1 90 1.2E-26 T 14-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Thimo_0756 30132eaa906e11eedb0fafed0ade7553 95 SMART SM01409 8 60 1.3E-17 T 14-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Thimo_0756 30132eaa906e11eedb0fafed0ade7553 95 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 58 4.7E-23 T 14-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_3208 23cc1f7fd5bab4d29e4f3967d9e29c7f 178 SUPERFAMILY SSF56770 43 167 1.18E-49 T 14-10-2018 Thimo_3208 23cc1f7fd5bab4d29e4f3967d9e29c7f 178 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 55 165 2.8E-26 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3208 23cc1f7fd5bab4d29e4f3967d9e29c7f 178 Gene3D G3DSA:3.40.50.12280 29 176 9.7E-49 T 14-10-2018 Thimo_1330 8a0bee27c2c0ebb1f61cdf565bce7e70 223 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 21 219 3.3E-57 T 14-10-2018 Thimo_1330 8a0bee27c2c0ebb1f61cdf565bce7e70 223 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 7 222 34.939 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Thimo_1330 8a0bee27c2c0ebb1f61cdf565bce7e70 223 SUPERFAMILY SSF53335 24 220 2.09E-42 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1330 8a0bee27c2c0ebb1f61cdf565bce7e70 223 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 145 160 - T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Thimo_1330 8a0bee27c2c0ebb1f61cdf565bce7e70 223 Gene3D G3DSA:3.40.50.150 5 222 1.6E-71 T 14-10-2018 Thimo_1330 8a0bee27c2c0ebb1f61cdf565bce7e70 223 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 19 221 3.4E-64 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Thimo_1068 ce51b2e50c3cde132c8c8225d5ab59de 246 PIRSF PIRSF015601 3 240 1.8E-54 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Thimo_1068 ce51b2e50c3cde132c8c8225d5ab59de 246 SUPERFAMILY SSF75217 74 241 1.09E-50 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Thimo_1068 ce51b2e50c3cde132c8c8225d5ab59de 246 Pfam PF04452 RNA methyltransferase 24 236 5.3E-66 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Thimo_1068 ce51b2e50c3cde132c8c8225d5ab59de 246 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 7 240 6.7E-59 T 14-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Thimo_1068 ce51b2e50c3cde132c8c8225d5ab59de 246 SUPERFAMILY SSF88697 4 68 5.14E-13 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_1068 ce51b2e50c3cde132c8c8225d5ab59de 246 Gene3D G3DSA:2.40.240.20 1 69 4.6E-16 T 14-10-2018 Thimo_1068 ce51b2e50c3cde132c8c8225d5ab59de 246 Gene3D G3DSA:3.40.1280.10 75 244 4.0E-57 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Thimo_2780 d803e4c6275dee35b8ff682e36df5285 378 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 22 376 27.725 T 14-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2780 d803e4c6275dee35b8ff682e36df5285 378 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 331 355 - T 14-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2780 d803e4c6275dee35b8ff682e36df5285 378 Pfam PF01098 Cell cycle protein 31 374 2.1E-110 T 14-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2780 d803e4c6275dee35b8ff682e36df5285 378 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 28 373 3.6E-133 T 14-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_1131 4db57f51c8211c51d83e8628d1aab2f0 286 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 2 268 5.7E-45 T 14-10-2018 IPR006380 Sucrose-phosphatase-like, N-terminal Thimo_1131 4db57f51c8211c51d83e8628d1aab2f0 286 Gene3D G3DSA:3.40.50.1000 4 267 1.3E-55 T 14-10-2018 IPR023214 HAD superfamily Thimo_1131 4db57f51c8211c51d83e8628d1aab2f0 286 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 212 2.3E-14 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Thimo_1131 4db57f51c8211c51d83e8628d1aab2f0 286 Gene3D G3DSA:3.90.1070.10 96 175 1.3E-55 T 14-10-2018 Thimo_1131 4db57f51c8211c51d83e8628d1aab2f0 286 SUPERFAMILY SSF56784 2 230 2.16E-23 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_2242 dbdebc8433816efd62150f6055313f2a 317 SUPERFAMILY SSF52540 16 315 8.5E-25 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2242 dbdebc8433816efd62150f6055313f2a 317 Gene3D G3DSA:3.40.50.300 6 316 1.3E-34 T 14-10-2018 Thimo_2242 dbdebc8433816efd62150f6055313f2a 317 Pfam PF13469 Sulfotransferase family 19 271 4.7E-21 T 14-10-2018 Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 Pfam PF03379 CcmB protein 6 220 5.6E-75 T 14-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 1.9E-60 T 14-10-2018 Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 196 219 1.9E-60 T 14-10-2018 Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 1.9E-60 T 14-10-2018 Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 1.9E-60 T 14-10-2018 Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 1.9E-60 T 14-10-2018 Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 134 157 1.9E-60 T 14-10-2018 Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 PIRSF PIRSF002764 1 223 5.8E-81 T 14-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria Thimo_1357 d0806d3ae38b2ceb765ce47b9c4f1ea6 223 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 8 219 5.5E-74 T 14-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria Thimo_3641 ddf32ad78502d10dc5055f0e8beec5f5 193 Pfam PF07603 Protein of unknown function (DUF1566) 52 178 4.0E-30 T 14-10-2018 IPR011460 Protein of unknown function DUF1566 Thimo_3687 01b8d9097d8ca7d3ccdfe07d9fa7448a 242 SMART SM00563 75 190 6.8E-28 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Thimo_3687 01b8d9097d8ca7d3ccdfe07d9fa7448a 242 Pfam PF01553 Acyltransferase 63 187 1.5E-17 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Thimo_3687 01b8d9097d8ca7d3ccdfe07d9fa7448a 242 SUPERFAMILY SSF69593 33 234 1.57E-34 T 14-10-2018 Thimo_2099 eb2eebec0431eba934383fbb96ac0f97 651 SUPERFAMILY SSF52540 20 600 1.54E-24 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2099 eb2eebec0431eba934383fbb96ac0f97 651 SMART SM00487 19 432 0.0025 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_2099 eb2eebec0431eba934383fbb96ac0f97 651 Pfam PF13307 Helicase C-terminal domain 459 617 9.1E-35 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Thimo_2099 eb2eebec0431eba934383fbb96ac0f97 651 Gene3D G3DSA:3.40.50.300 442 635 1.8E-35 T 14-10-2018 Thimo_2099 eb2eebec0431eba934383fbb96ac0f97 651 SUPERFAMILY SSF52540 185 588 2.2E-5 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2099 eb2eebec0431eba934383fbb96ac0f97 651 Gene3D G3DSA:3.40.50.300 21 269 6.5E-48 T 14-10-2018 Thimo_2099 eb2eebec0431eba934383fbb96ac0f97 651 SMART SM00491 475 604 1.8E-40 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Thimo_1620 f2d16d93ff6650327888b743088ff972 490 Gene3D G3DSA:2.30.40.20 21 73 4.3E-10 T 14-10-2018 Thimo_1620 f2d16d93ff6650327888b743088ff972 490 SUPERFAMILY SSF56672 4 233 1.42E-33 T 14-10-2018 Thimo_1620 f2d16d93ff6650327888b743088ff972 490 Pfam PF00817 impB/mucB/samB family 9 143 8.4E-13 T 14-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Thimo_1620 f2d16d93ff6650327888b743088ff972 490 Gene3D G3DSA:3.30.70.270 6 132 4.3E-10 T 14-10-2018 Thimo_0342 bbac1dfea018c29bdde0639f5d74ae92 419 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 14-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Thimo_0342 bbac1dfea018c29bdde0639f5d74ae92 419 Pfam PF00464 Serine hydroxymethyltransferase 9 386 4.9E-178 T 14-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Thimo_0342 bbac1dfea018c29bdde0639f5d74ae92 419 PIRSF PIRSF000412 1 418 1.8E-164 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Thimo_0342 bbac1dfea018c29bdde0639f5d74ae92 419 SUPERFAMILY SSF53383 7 416 7.23E-182 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_0342 bbac1dfea018c29bdde0639f5d74ae92 419 Gene3D G3DSA:3.40.640.10 37 289 1.7E-182 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_0342 bbac1dfea018c29bdde0639f5d74ae92 419 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.267 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Thimo_0342 bbac1dfea018c29bdde0639f5d74ae92 419 Gene3D G3DSA:3.90.1150.10 11 393 1.7E-182 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_3275 ee799742ebf62c79619f66579d924427 229 Gene3D G3DSA:3.30.450.40 49 223 4.8E-41 T 14-10-2018 IPR029016 GAF-like domain superfamily Thimo_3275 ee799742ebf62c79619f66579d924427 229 Pfam PF04340 Protein of unknown function, DUF484 14 220 1.8E-46 T 14-10-2018 IPR007435 Protein of unknown function DUF484 Thimo_2515 3a4279b6355ea267cffa42be0c2e8fb7 149 SUPERFAMILY SSF90002 9 117 1.31E-13 T 14-10-2018 Thimo_2515 3a4279b6355ea267cffa42be0c2e8fb7 149 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 20 117 8.3E-20 T 14-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Thimo_2515 3a4279b6355ea267cffa42be0c2e8fb7 149 SMART SM00833 6 119 5.6E-29 T 14-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Thimo_2172 50b3d8a1b74dbfce936dfaf39be94a52 354 Gene3D G3DSA:3.20.20.70 1 354 5.8E-155 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_2172 50b3d8a1b74dbfce936dfaf39be94a52 354 SUPERFAMILY SSF51569 3 328 2.93E-108 T 14-10-2018 Thimo_2172 50b3d8a1b74dbfce936dfaf39be94a52 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Thimo_2172 50b3d8a1b74dbfce936dfaf39be94a52 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 2.4E-95 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Thimo_2172 50b3d8a1b74dbfce936dfaf39be94a52 354 PIRSF PIRSF001359 1 329 1.6E-83 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Thimo_2172 50b3d8a1b74dbfce936dfaf39be94a52 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 2.4E-98 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Thimo_2172 50b3d8a1b74dbfce936dfaf39be94a52 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 2.3E-202 T 14-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 Thimo_0881 2f706da0dcb13de8d0bdb807a6ded312 415 SUPERFAMILY SSF52540 35 181 7.82E-15 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0881 2f706da0dcb13de8d0bdb807a6ded312 415 Gene3D G3DSA:3.40.50.300 47 172 4.1E-12 T 14-10-2018 Thimo_0881 2f706da0dcb13de8d0bdb807a6ded312 415 Pfam PF05128 Domain of unknown function (DUF697) 266 389 4.3E-6 T 14-10-2018 IPR021147 Protein of unknown function DUF697 Thimo_0881 2f706da0dcb13de8d0bdb807a6ded312 415 Pfam PF01926 50S ribosome-binding GTPase 52 139 5.9E-6 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_1818 74eb880d00ea147325ef22ba8e6d519d 394 Gene3D G3DSA:3.90.1150.10 27 389 5.0E-133 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_1818 74eb880d00ea147325ef22ba8e6d519d 394 SUPERFAMILY SSF53383 4 392 4.81E-114 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1818 74eb880d00ea147325ef22ba8e6d519d 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 237 250 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Thimo_1818 74eb880d00ea147325ef22ba8e6d519d 394 Gene3D G3DSA:3.40.640.10 64 287 5.0E-133 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_1818 74eb880d00ea147325ef22ba8e6d519d 394 Pfam PF00155 Aminotransferase class I and II 32 389 5.8E-73 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 PIRSF PIRSF006487 1 365 5.1E-88 T 14-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 Gene3D G3DSA:3.30.1360.120 6 231 2.9E-87 T 14-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 361 45.053 T 14-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 262 355 4.4E-23 T 14-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 Gene3D G3DSA:4.10.1250.10 232 276 4.5E-27 T 14-10-2018 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 360 2.0E-127 T 14-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 3.3E-90 T 14-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 Gene3D G3DSA:2.40.30.110 278 368 3.0E-26 T 14-10-2018 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 SUPERFAMILY SSF101790 270 362 9.32E-23 T 14-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 Gene3D G3DSA:3.30.70.1400 51 138 2.9E-87 T 14-10-2018 Thimo_1677 719a123e6150895a8fedeff697b2a9d2 368 SUPERFAMILY SSF103025 4 276 2.35E-92 T 14-10-2018 Thimo_2712 92b70d99a84b351f843d48228d733faa 527 Gene3D G3DSA:3.40.50.620 22 248 1.3E-37 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2712 92b70d99a84b351f843d48228d733faa 527 TIGRFAM TIGR03183 DNA_S_dndC: putative sulfurtransferase DndC 45 490 7.7E-191 T 14-10-2018 IPR017598 Sulphur transferase DndC, putative Thimo_2712 92b70d99a84b351f843d48228d733faa 527 SUPERFAMILY SSF52402 35 247 5.35E-25 T 14-10-2018 Thimo_2712 92b70d99a84b351f843d48228d733faa 527 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 60 242 3.4E-8 T 14-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 Thimo_2992 e7973e5baf2dd82f6457d2d138b5cbc7 64 SUPERFAMILY SSF56918 1 45 1.41E-14 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2992 e7973e5baf2dd82f6457d2d138b5cbc7 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 1.8E-8 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2992 e7973e5baf2dd82f6457d2d138b5cbc7 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 1.8E-8 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2992 e7973e5baf2dd82f6457d2d138b5cbc7 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 1.8E-8 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2992 e7973e5baf2dd82f6457d2d138b5cbc7 64 Gene3D G3DSA:4.10.220.20 1 55 6.2E-21 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2992 e7973e5baf2dd82f6457d2d138b5cbc7 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 5.6E-14 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_1230 5571c41af6f941e3dd223c6d8dd9e0a2 147 Gene3D G3DSA:1.25.40.10 7 146 2.0E-38 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1230 5571c41af6f941e3dd223c6d8dd9e0a2 147 SMART SM00671 40 75 1.1E-4 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_1230 5571c41af6f941e3dd223c6d8dd9e0a2 147 SMART SM00671 76 111 9.4E-11 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_1230 5571c41af6f941e3dd223c6d8dd9e0a2 147 SMART SM00671 112 147 3.1E-6 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_1230 5571c41af6f941e3dd223c6d8dd9e0a2 147 SUPERFAMILY SSF81901 15 142 1.44E-32 T 14-10-2018 Thimo_1230 5571c41af6f941e3dd223c6d8dd9e0a2 147 Pfam PF08238 Sel1 repeat 118 142 1.1E-7 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_1230 5571c41af6f941e3dd223c6d8dd9e0a2 147 Pfam PF08238 Sel1 repeat 78 110 2.2E-9 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_1230 5571c41af6f941e3dd223c6d8dd9e0a2 147 Pfam PF08238 Sel1 repeat 40 74 6.9E-4 T 14-10-2018 IPR006597 Sel1-like repeat Thimo_0867 7f0095f62dbd45a456eeeb25e4aca128 428 Pfam PF01712 Deoxynucleoside kinase 5 188 1.6E-26 T 14-10-2018 IPR031314 Deoxynucleoside kinase domain Thimo_0867 7f0095f62dbd45a456eeeb25e4aca128 428 Gene3D G3DSA:3.40.50.300 4 203 3.6E-31 T 14-10-2018 Thimo_0867 7f0095f62dbd45a456eeeb25e4aca128 428 SUPERFAMILY SSF52309 306 381 3.36E-6 T 14-10-2018 Thimo_0867 7f0095f62dbd45a456eeeb25e4aca128 428 Gene3D G3DSA:3.40.50.450 245 423 4.4E-19 T 14-10-2018 Thimo_0867 7f0095f62dbd45a456eeeb25e4aca128 428 SUPERFAMILY SSF52540 1 185 7.23E-22 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 Gene3D G3DSA:2.170.8.10 43 335 1.1E-222 T 14-10-2018 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 13 532 1.0E-211 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 Gene3D G3DSA:3.40.449.10 33 217 1.1E-222 T 14-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 PIRSF PIRSF006294 6 533 2.0E-227 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 Gene3D G3DSA:3.90.228.20 218 518 1.1E-222 T 14-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 254 269 - T 14-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 SUPERFAMILY SSF53795 217 532 2.98E-132 T 14-10-2018 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 Pfam PF01293 Phosphoenolpyruvate carboxykinase 23 486 2.6E-216 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 SUPERFAMILY SSF68923 11 216 2.79E-81 T 14-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Thimo_2282 52653aa099e1236d9ad3aa71e4842836 533 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 17 533 52.744 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Thimo_1052 92262a43a12025f511607d5e295af4f9 648 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 53.589 T 14-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Thimo_1052 92262a43a12025f511607d5e295af4f9 648 ProSitePatterns PS00455 Putative AMP-binding domain signature. 260 271 - T 14-10-2018 IPR020845 AMP-binding, conserved site Thimo_1052 92262a43a12025f511607d5e295af4f9 648 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 643 0.0 T 14-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Thimo_1052 92262a43a12025f511607d5e295af4f9 648 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 82 9.1E-24 T 14-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Thimo_1052 92262a43a12025f511607d5e295af4f9 648 SUPERFAMILY SSF56801 13 640 4.71E-182 T 14-10-2018 Thimo_1052 92262a43a12025f511607d5e295af4f9 648 Pfam PF00501 AMP-binding enzyme 84 522 7.6E-94 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Thimo_1052 92262a43a12025f511607d5e295af4f9 648 Gene3D G3DSA:3.40.50.12780 51 515 1.4E-107 T 14-10-2018 Thimo_1052 92262a43a12025f511607d5e295af4f9 648 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 2.8E-22 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Thimo_1052 92262a43a12025f511607d5e295af4f9 648 Gene3D G3DSA:3.30.300.30 518 648 2.7E-26 T 14-10-2018 Thimo_0198 f2763f470d38245e4ca9fea267397c52 390 SUPERFAMILY SSF103473 8 384 1.7E-39 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_0198 f2763f470d38245e4ca9fea267397c52 390 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 18 376 8.4E-72 T 14-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB Thimo_0198 f2763f470d38245e4ca9fea267397c52 390 Gene3D G3DSA:1.20.1250.20 8 385 8.5E-27 T 14-10-2018 Thimo_1080 b5fc2a7dd8e5404e5408109460bf4c18 220 Gene3D G3DSA:3.40.50.620 1 215 8.5E-59 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1080 b5fc2a7dd8e5404e5408109460bf4c18 220 Pfam PF01467 Cytidylyltransferase-like 4 183 1.1E-27 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Thimo_1080 b5fc2a7dd8e5404e5408109460bf4c18 220 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 1 209 26.7 T 14-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Thimo_1080 b5fc2a7dd8e5404e5408109460bf4c18 220 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 2 63 1.2E-8 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Thimo_1080 b5fc2a7dd8e5404e5408109460bf4c18 220 SUPERFAMILY SSF52374 1 209 3.75E-49 T 14-10-2018 Thimo_1080 b5fc2a7dd8e5404e5408109460bf4c18 220 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 4 208 1.1E-44 T 14-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Thimo_1313 e3c232fc0526d5c9962cdbb0ec2a0d65 322 Gene3D G3DSA:1.10.600.10 1 321 2.2E-108 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_1313 e3c232fc0526d5c9962cdbb0ec2a0d65 322 SUPERFAMILY SSF48576 5 322 4.16E-97 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_1313 e3c232fc0526d5c9962cdbb0ec2a0d65 322 Pfam PF00348 Polyprenyl synthetase 32 275 3.4E-74 T 14-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Thimo_2682 68a649178dd13188a679589d46b005c2 317 SUPERFAMILY SSF64182 5 315 1.28E-38 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily Thimo_2533 a3198a3d654bb2314f0ea1141863bfdb 332 Gene3D G3DSA:3.40.190.170 29 328 1.2E-95 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Thimo_2533 a3198a3d654bb2314f0ea1141863bfdb 332 PIRSF PIRSF006470 1 331 7.6E-128 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Thimo_2533 a3198a3d654bb2314f0ea1141863bfdb 332 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 315 1.5E-98 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Thimo_2533 a3198a3d654bb2314f0ea1141863bfdb 332 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 33 276 2.8E-79 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Thimo_1281 89bd07bc34518b853875c214cdfc6b96 329 Gene3D G3DSA:1.10.10.10 1 64 2.2E-6 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1281 89bd07bc34518b853875c214cdfc6b96 329 Pfam PF08279 HTH domain 6 60 2.6E-7 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 Thimo_1281 89bd07bc34518b853875c214cdfc6b96 329 Pfam PF13280 WYL domain 144 319 1.9E-38 T 14-10-2018 IPR026881 WYL domain Thimo_0325 303401252f6194ac7ecbf7e4a38661f7 113 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 3 108 12.927 T 14-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Thimo_0325 303401252f6194ac7ecbf7e4a38661f7 113 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 5 70 3.8E-8 T 14-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Thimo_0325 303401252f6194ac7ecbf7e4a38661f7 113 Gene3D G3DSA:3.30.70.240 1 87 3.5E-16 T 14-10-2018 Thimo_0325 303401252f6194ac7ecbf7e4a38661f7 113 SUPERFAMILY SSF143430 2 72 3.27E-17 T 14-10-2018 Thimo_0325 303401252f6194ac7ecbf7e4a38661f7 113 Pfam PF09827 CRISPR associated protein Cas2 4 70 7.3E-13 T 14-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Thimo_3437 35e92c0fe0993e8ddea823f97f1cad87 655 Gene3D G3DSA:3.40.50.2000 168 649 1.2E-154 T 14-10-2018 Thimo_3437 35e92c0fe0993e8ddea823f97f1cad87 655 Hamap MF_00484 Glycogen synthase [glgA]. 166 652 38.295 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Thimo_3437 35e92c0fe0993e8ddea823f97f1cad87 655 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 168 651 6.0E-157 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Thimo_3437 35e92c0fe0993e8ddea823f97f1cad87 655 Pfam PF00534 Glycosyl transferases group 1 460 619 8.9E-10 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_3437 35e92c0fe0993e8ddea823f97f1cad87 655 Pfam PF08323 Starch synthase catalytic domain 168 408 1.2E-63 T 14-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Thimo_3437 35e92c0fe0993e8ddea823f97f1cad87 655 SUPERFAMILY SSF53756 164 654 1.13E-100 T 14-10-2018 Thimo_3437 35e92c0fe0993e8ddea823f97f1cad87 655 Gene3D G3DSA:3.40.50.2000 422 634 1.2E-154 T 14-10-2018 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 SUPERFAMILY SSF53182 2 212 1.26E-51 T 14-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 221 1.4E-72 T 14-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 Pfam PF01470 Pyroglutamyl peptidase 3 207 4.3E-64 T 14-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 9.9E-21 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 9.9E-21 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 9.9E-21 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 135 151 9.9E-21 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 165 177 9.9E-21 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 Gene3D G3DSA:3.40.630.20 1 218 7.1E-57 T 14-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 14-10-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site MetaCyc: PWY-7942 Thimo_3568 bed9fa78026c929754869aba1cad60f8 222 PIRSF PIRSF015592 1 216 1.8E-61 T 14-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 Thimo_0142 21bb902e43e7cc785aed314a1c50e98c 291 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 30 282 1.6E-16 T 14-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 Thimo_0142 21bb902e43e7cc785aed314a1c50e98c 291 Gene3D G3DSA:3.60.130.10 14 289 8.9E-28 T 14-10-2018 Thimo_0142 21bb902e43e7cc785aed314a1c50e98c 291 SUPERFAMILY SSF51197 16 285 6.87E-36 T 14-10-2018 Thimo_2948 204b822f98b3816fe57fa55031b2c52a 114 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 17 109 7.1E-38 T 14-10-2018 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2948 204b822f98b3816fe57fa55031b2c52a 114 Gene3D G3DSA:3.30.190.10 4 113 2.0E-40 T 14-10-2018 IPR036385 Ribulose bisphosphate carboxylase, small subunit superfamily KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2948 204b822f98b3816fe57fa55031b2c52a 114 SMART SM00961 15 112 3.1E-43 T 14-10-2018 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2948 204b822f98b3816fe57fa55031b2c52a 114 SUPERFAMILY SSF55239 9 109 2.36E-38 T 14-10-2018 IPR036385 Ribulose bisphosphate carboxylase, small subunit superfamily KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0130 460e18662436d6784100b24b54158b6c 242 Pfam PF04367 Protein of unknown function (DUF502) 72 172 1.9E-28 T 14-10-2018 IPR007462 Protein of unknown function DUF502 Thimo_1283 0b29683ce113232615f7e82c37812558 128 Pfam PF01850 PIN domain 3 122 7.2E-11 T 14-10-2018 IPR002716 PIN domain Thimo_1283 0b29683ce113232615f7e82c37812558 128 SUPERFAMILY SSF88723 3 127 3.92E-18 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_1283 0b29683ce113232615f7e82c37812558 128 Gene3D G3DSA:3.40.50.1010 1 128 7.4E-9 T 14-10-2018 Thimo_3148 3c5d48d271bba5431a8a6af1b1b134eb 111 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 16 103 4.3E-25 T 14-10-2018 IPR009241 Toxin HigB-like Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 Gene3D G3DSA:3.30.360.10 520 708 1.4E-36 T 14-10-2018 Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 Pfam PF00107 Zinc-binding dehydrogenase 178 295 1.4E-17 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF51735 143 328 2.86E-27 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 Gene3D G3DSA:3.40.50.720 395 519 3.9E-25 T 14-10-2018 Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF51735 395 560 3.78E-38 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 Gene3D G3DSA:3.90.180.10 121 351 3.8E-38 T 14-10-2018 Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 Gene3D G3DSA:3.40.50.720 155 288 3.8E-38 T 14-10-2018 Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF55347 553 682 3.05E-12 T 14-10-2018 Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 398 516 1.8E-17 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 SUPERFAMILY SSF50129 9 176 1.4E-20 T 14-10-2018 IPR011032 GroES-like superfamily Thimo_1013 1d1e32b86aa5246a4d38cda8540ce693 709 SMART SM00829 78 365 4.8E-5 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Thimo_1652 add0b84909f4aa87795424b71ed77084 134 Pfam PF04386 Stringent starvation protein B 4 132 3.9E-32 T 14-10-2018 IPR007481 Stringent starvation protein B Thimo_1652 add0b84909f4aa87795424b71ed77084 134 Gene3D G3DSA:2.30.30.220 1 122 3.3E-47 T 14-10-2018 IPR036760 SspB-like superfamily Thimo_1652 add0b84909f4aa87795424b71ed77084 134 SUPERFAMILY SSF101738 1 112 7.72E-45 T 14-10-2018 IPR036760 SspB-like superfamily Thimo_1652 add0b84909f4aa87795424b71ed77084 134 PIRSF PIRSF005276 1 134 7.6E-50 T 14-10-2018 IPR007481 Stringent starvation protein B Thimo_0958 87495bec7c7d7af517aed428daaf30f8 363 Gene3D G3DSA:3.40.50.300 84 340 5.3E-88 T 14-10-2018 Thimo_0958 87495bec7c7d7af517aed428daaf30f8 363 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 97 339 3.9E-106 T 14-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Thimo_0958 87495bec7c7d7af517aed428daaf30f8 363 ProSitePatterns PS01215 Mrp family signature. 204 220 - T 14-10-2018 IPR000808 Mrp, conserved site GO:0005524 Thimo_0958 87495bec7c7d7af517aed428daaf30f8 363 Pfam PF01883 Iron-sulfur cluster assembly protein 6 78 5.2E-16 T 14-10-2018 IPR002744 MIP18 family-like Thimo_0958 87495bec7c7d7af517aed428daaf30f8 363 SUPERFAMILY SSF117916 4 86 5.56E-17 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Thimo_0958 87495bec7c7d7af517aed428daaf30f8 363 SUPERFAMILY SSF52540 89 323 3.85E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0958 87495bec7c7d7af517aed428daaf30f8 363 Hamap MF_02040 Iron-sulfur cluster carrier protein. 93 341 38.662 T 14-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein Thimo_1725 14f9a8732f60b41a0794327c8d89763e 112 Gene3D G3DSA:3.10.450.40 40 112 1.9E-5 T 14-10-2018 Thimo_1725 14f9a8732f60b41a0794327c8d89763e 112 Pfam PF03413 Peptidase propeptide and YPEB domain 52 109 1.3E-6 T 14-10-2018 IPR025711 PepSY domain Thimo_3016 d408176347320feb3bdd4e523a6d2573 296 TIGRFAM TIGR03055 photo_alph_chp2: putative photosynthetic complex assembly protein 2 7 249 3.4E-91 T 14-10-2018 IPR017496 Photosynthetic complex assembly protein 2, putative Thimo_3016 d408176347320feb3bdd4e523a6d2573 296 Pfam PF12291 Protein of unknown function (DUF3623) 1 253 1.6E-111 T 14-10-2018 IPR017496 Photosynthetic complex assembly protein 2, putative Thimo_3654 9675210cfb6954c67c74c254050c80ef 261 SUPERFAMILY SSF53271 88 259 3.28E-33 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_3654 9675210cfb6954c67c74c254050c80ef 261 Gene3D G3DSA:3.40.50.2020 136 261 7.8E-16 T 14-10-2018 Thimo_2676 4fb3fe7bd6bd120ecc6e3046b12ab1ea 361 Pfam PF00953 Glycosyl transferase family 4 75 232 1.6E-35 T 14-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Thimo_2384 661e092829240f48677a0afc831a3c7a 59 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 2.5E-19 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2384 661e092829240f48677a0afc831a3c7a 59 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.527 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2384 661e092829240f48677a0afc831a3c7a 59 Pfam PF01783 Ribosomal L32p protein family 2 56 1.4E-20 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2384 661e092829240f48677a0afc831a3c7a 59 SUPERFAMILY SSF57829 2 55 1.95E-18 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Thimo_1685 dd3615f90c5e4632c90b4f6947f75120 85 SUPERFAMILY SSF54285 1 85 2.24E-19 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Thimo_1685 dd3615f90c5e4632c90b4f6947f75120 85 Gene3D G3DSA:3.10.20.30 1 85 1.6E-21 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_1685 dd3615f90c5e4632c90b4f6947f75120 85 Pfam PF02597 ThiS family 4 85 2.1E-15 T 14-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 Thimo_1403 00f1644be88aca27c0059758ca99d72d 337 Gene3D G3DSA:3.20.20.70 3 296 2.4E-55 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1403 00f1644be88aca27c0059758ca99d72d 337 PIRSF PIRSF000164 1 308 1.1E-39 T 14-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Thimo_1403 00f1644be88aca27c0059758ca99d72d 337 Pfam PF01180 Dihydroorotate dehydrogenase 88 291 1.4E-10 T 14-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Thimo_1403 00f1644be88aca27c0059758ca99d72d 337 SUPERFAMILY SSF51395 1 306 6.41E-57 T 14-10-2018 Thimo_3155 e256e96da60fb4fbecba470fbf1a9bbf 571 Pfam PF11067 Protein of unknown function (DUF2868) 200 555 2.0E-105 T 14-10-2018 IPR021296 Protein of unknown function DUF2868 Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 SUPERFAMILY SSF81333 3 76 1.44E-17 T 14-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 PRINTS PR00124 ATP synthase C subunit signature 11 30 5.2E-10 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 PRINTS PR00124 ATP synthase C subunit signature 32 47 5.2E-10 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 PRINTS PR00124 ATP synthase C subunit signature 49 74 5.2E-10 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 7.0E-27 T 14-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 Pfam PF00137 ATP synthase subunit C 10 72 4.9E-10 T 14-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 14-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 13.541 T 14-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1166 4b7b310a87be18e154870f03e2ab67bf 77 Gene3D G3DSA:1.20.20.10 1 77 8.0E-28 T 14-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_3522 069e89501e7a9114ec08b5127454f02b 168 Pfam PF05618 Putative ATP-dependant zinc protease 15 151 9.4E-36 T 14-10-2018 Thimo_3522 069e89501e7a9114ec08b5127454f02b 168 Gene3D G3DSA:2.40.70.10 13 142 3.3E-28 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily Thimo_3522 069e89501e7a9114ec08b5127454f02b 168 SUPERFAMILY SSF50630 15 149 1.13E-42 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily Thimo_3527 ff7fd490d5f2dc14a19403281dfeb5f3 438 Gene3D G3DSA:1.10.443.10 213 426 1.1E-66 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Thimo_3527 ff7fd490d5f2dc14a19403281dfeb5f3 438 Pfam PF00589 Phage integrase family 223 423 1.2E-46 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Thimo_3527 ff7fd490d5f2dc14a19403281dfeb5f3 438 SUPERFAMILY SSF56349 124 423 5.59E-46 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Thimo_3527 ff7fd490d5f2dc14a19403281dfeb5f3 438 Gene3D G3DSA:1.10.150.130 115 211 1.3E-30 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Thimo_3527 ff7fd490d5f2dc14a19403281dfeb5f3 438 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 118 207 1.2E-23 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Thimo_3527 ff7fd490d5f2dc14a19403281dfeb5f3 438 TIGRFAM TIGR02249 integrase_gron: integron integrase 118 436 5.5E-127 T 14-10-2018 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 22 584 1.1E-170 T 14-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 Pfam PF02867 Ribonucleotide reductase, barrel domain 79 580 5.2E-130 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 Gene3D G3DSA:3.20.70.20 2 597 2.1E-176 T 14-10-2018 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 SUPERFAMILY SSF51998 5 595 6.71E-153 T 14-10-2018 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 386 409 1.7E-25 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 320 343 1.7E-25 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 441 468 1.7E-25 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 161 180 1.7E-25 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_2162 a601a53bbf9883657c5fa7660dfdcb0a 954 PRINTS PR01183 Ribonucleotide reductase large chain signature 358 380 1.7E-25 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Thimo_1342 e5992b38dbbaa95f5e2fe08af288126a 473 Gene3D G3DSA:2.60.40.10 355 472 5.4E-17 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_1342 e5992b38dbbaa95f5e2fe08af288126a 473 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 41 473 5.6E-138 T 14-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 Thimo_1342 e5992b38dbbaa95f5e2fe08af288126a 473 Pfam PF12801 4Fe-4S binding domain 95 134 8.5E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_1342 e5992b38dbbaa95f5e2fe08af288126a 473 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 354 473 7.2E-25 T 14-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain Thimo_1342 e5992b38dbbaa95f5e2fe08af288126a 473 SUPERFAMILY SSF54862 107 324 1.0E-22 T 14-10-2018 Thimo_1342 e5992b38dbbaa95f5e2fe08af288126a 473 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 269 280 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1342 e5992b38dbbaa95f5e2fe08af288126a 473 Pfam PF13746 4Fe-4S dicluster domain 218 321 3.8E-37 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_2912 afbeda2804887d41aec29a391122dc98 403 SUPERFAMILY SSF88713 4 299 2.67E-46 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Thimo_2912 afbeda2804887d41aec29a391122dc98 403 Pfam PF03065 Glycosyl hydrolase family 57 87 320 4.0E-23 T 14-10-2018 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 Thimo_2912 afbeda2804887d41aec29a391122dc98 403 Gene3D G3DSA:3.20.110.20 3 341 8.0E-48 T 14-10-2018 Thimo_0488 1ee793717525253fd8e31aee3899077c 305 SUPERFAMILY SSF111369 54 197 7.19E-22 T 14-10-2018 Thimo_0488 1ee793717525253fd8e31aee3899077c 305 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 55 249 5.3E-34 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_0488 1ee793717525253fd8e31aee3899077c 305 Pfam PF13437 HlyD family secretion protein 165 251 3.0E-14 T 14-10-2018 Thimo_0488 1ee793717525253fd8e31aee3899077c 305 Pfam PF13533 Biotin-lipoyl like 57 103 2.6E-14 T 14-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Thimo_0488 1ee793717525253fd8e31aee3899077c 305 Gene3D G3DSA:2.40.30.170 179 297 1.7E-26 T 14-10-2018 Thimo_0488 1ee793717525253fd8e31aee3899077c 305 Gene3D G3DSA:2.40.50.100 56 132 2.3E-9 T 14-10-2018 Thimo_3718 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13007 Transposase C of IS166 homeodomain 28 85 2.6E-8 T 14-10-2018 IPR024463 Transposase TnpC, homeodomain Thimo_3718 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13817 IS66 C-terminal element 469 505 1.9E-11 T 14-10-2018 IPR039552 Transposase IS66, C-terminal Thimo_3718 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF03050 Transposase IS66 family 174 463 1.1E-76 T 14-10-2018 IPR004291 Transposase, IS66 Thimo_3771 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13007 Transposase C of IS166 homeodomain 28 85 2.6E-8 T 14-10-2018 IPR024463 Transposase TnpC, homeodomain Thimo_3771 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13817 IS66 C-terminal element 469 505 1.9E-11 T 14-10-2018 IPR039552 Transposase IS66, C-terminal Thimo_3771 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF03050 Transposase IS66 family 174 463 1.1E-76 T 14-10-2018 IPR004291 Transposase, IS66 Thimo_0009 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13007 Transposase C of IS166 homeodomain 28 85 2.6E-8 T 14-10-2018 IPR024463 Transposase TnpC, homeodomain Thimo_0009 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13817 IS66 C-terminal element 469 505 1.9E-11 T 14-10-2018 IPR039552 Transposase IS66, C-terminal Thimo_0009 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF03050 Transposase IS66 family 174 463 1.1E-76 T 14-10-2018 IPR004291 Transposase, IS66 Thimo_3730 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13007 Transposase C of IS166 homeodomain 28 85 2.6E-8 T 14-10-2018 IPR024463 Transposase TnpC, homeodomain Thimo_3730 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF13817 IS66 C-terminal element 469 505 1.9E-11 T 14-10-2018 IPR039552 Transposase IS66, C-terminal Thimo_3730 2461d1777bbbc523d1e2a9a3cbcd18cf 529 Pfam PF03050 Transposase IS66 family 174 463 1.1E-76 T 14-10-2018 IPR004291 Transposase, IS66 Thimo_1809 80f2defa0008d67da2fb264ad6ed42a4 310 Pfam PF00850 Histone deacetylase domain 20 305 2.4E-79 T 14-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Thimo_1809 80f2defa0008d67da2fb264ad6ed42a4 310 Gene3D G3DSA:3.40.800.20 1 308 7.9E-111 T 14-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Thimo_1809 80f2defa0008d67da2fb264ad6ed42a4 310 SUPERFAMILY SSF52768 1 308 2.64E-97 T 14-10-2018 IPR023696 Ureohydrolase domain superfamily Thimo_1809 80f2defa0008d67da2fb264ad6ed42a4 310 PRINTS PR01270 Histone deacetylase superfamily signature 158 173 1.1E-17 T 14-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Thimo_1809 80f2defa0008d67da2fb264ad6ed42a4 310 PRINTS PR01270 Histone deacetylase superfamily signature 236 246 1.1E-17 T 14-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Thimo_1809 80f2defa0008d67da2fb264ad6ed42a4 310 PRINTS PR01270 Histone deacetylase superfamily signature 124 147 1.1E-17 T 14-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Thimo_1762 5427fa81b68d1dd21fd4bbb281474515 241 Gene3D G3DSA:3.40.50.300 1 231 2.2E-67 T 14-10-2018 Thimo_1762 5427fa81b68d1dd21fd4bbb281474515 241 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1762 5427fa81b68d1dd21fd4bbb281474515 241 Pfam PF00005 ABC transporter 17 163 4.2E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1762 5427fa81b68d1dd21fd4bbb281474515 241 SMART SM00382 26 213 3.6E-20 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1762 5427fa81b68d1dd21fd4bbb281474515 241 SUPERFAMILY SSF52540 1 215 2.54E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2185 fe5dbb14224f7d1ed1640eed9fd7f4a3 249 SUPERFAMILY SSF64438 5 246 2.2E-84 T 14-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Thimo_2185 fe5dbb14224f7d1ed1640eed9fd7f4a3 249 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 30 246 2.9E-56 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Thimo_2185 fe5dbb14224f7d1ed1640eed9fd7f4a3 249 Gene3D G3DSA:3.60.140.10 1 247 3.3E-92 T 14-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily Thimo_2185 fe5dbb14224f7d1ed1640eed9fd7f4a3 249 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 24 245 1.1E-77 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Thimo_3082 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 Pfam PF02563 Polysaccharide biosynthesis/export protein 36 109 4.0E-24 T 14-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 Thimo_3082 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 Gene3D G3DSA:3.10.560.10 109 197 4.1E-20 T 14-10-2018 Thimo_3082 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 Gene3D G3DSA:3.30.1950.10 45 108 3.2E-16 T 14-10-2018 Thimo_3082 f0c3d274b6df7bb6b0d8bc45958f0f7e 197 Pfam PF10531 SLBB domain 116 167 7.8E-11 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2613 acc3438349034872f33b6f1ee3d7a2c5 329 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 272 285 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Thimo_2613 acc3438349034872f33b6f1ee3d7a2c5 329 Pfam PF00294 pfkB family carbohydrate kinase 48 317 4.3E-53 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB Thimo_2613 acc3438349034872f33b6f1ee3d7a2c5 329 PRINTS PR00990 Ribokinase signature 55 74 4.0E-6 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Thimo_2613 acc3438349034872f33b6f1ee3d7a2c5 329 PRINTS PR00990 Ribokinase signature 243 254 4.0E-6 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Thimo_2613 acc3438349034872f33b6f1ee3d7a2c5 329 PRINTS PR00990 Ribokinase signature 205 220 4.0E-6 T 14-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Thimo_2613 acc3438349034872f33b6f1ee3d7a2c5 329 SUPERFAMILY SSF53613 1 316 1.87E-75 T 14-10-2018 IPR029056 Ribokinase-like Thimo_2613 acc3438349034872f33b6f1ee3d7a2c5 329 Gene3D G3DSA:3.40.1190.20 8 313 2.9E-78 T 14-10-2018 IPR029056 Ribokinase-like Thimo_2613 acc3438349034872f33b6f1ee3d7a2c5 329 Gene3D G3DSA:3.30.1110.10 14 132 2.9E-78 T 14-10-2018 Thimo_2564 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 PIRSF PIRSF004761 1 115 1.3E-29 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 Thimo_2564 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 20.806 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 Thimo_2564 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 Gene3D G3DSA:3.30.2320.80 1 114 8.3E-31 T 14-10-2018 Thimo_2564 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 14-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site Thimo_2564 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 111 3.0E-31 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 Thimo_2564 c0d9a6bd7b28257f1f1c3d8495bcf93a 117 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 112 8.6E-26 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:1.10.760.10 24 108 2.8E-22 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 Pfam PF00034 Cytochrome c 41 107 5.5E-5 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 414 494 1.2E-8 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 SUPERFAMILY SSF46626 24 108 2.76E-18 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:1.10.760.10 404 518 4.5E-38 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:1.10.760.10 263 397 1.2E-31 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 Gene3D G3DSA:1.10.760.10 135 213 6.7E-17 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 SUPERFAMILY SSF46626 405 506 5.28E-18 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 SUPERFAMILY SSF46626 278 393 4.47E-22 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0460 c4d93a2cc712530e1effeed8cd05068a 542 SUPERFAMILY SSF46626 140 211 4.24E-15 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0148 5a9c37aef86c896938c2fa4b488e93a1 110 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 4 110 5.0E-50 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0148 5a9c37aef86c896938c2fa4b488e93a1 110 SUPERFAMILY SSF69721 3 110 7.32E-42 T 14-10-2018 IPR025526 DsrC-like domain superfamily Thimo_0148 5a9c37aef86c896938c2fa4b488e93a1 110 Pfam PF04358 DsrC like protein 5 110 3.2E-46 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0148 5a9c37aef86c896938c2fa4b488e93a1 110 Gene3D G3DSA:3.30.1420.10 1 39 1.1E-15 T 14-10-2018 Thimo_0148 5a9c37aef86c896938c2fa4b488e93a1 110 PIRSF PIRSF006223 3 110 1.4E-43 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_0148 5a9c37aef86c896938c2fa4b488e93a1 110 Gene3D G3DSA:1.10.10.370 40 110 6.0E-36 T 14-10-2018 Thimo_1047 a60720c6326b7bb1bebaf9b93bef50d2 204 Pfam PF01121 Dephospho-CoA kinase 6 178 1.1E-62 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Thimo_1047 a60720c6326b7bb1bebaf9b93bef50d2 204 Gene3D G3DSA:3.40.50.300 2 200 1.5E-66 T 14-10-2018 Thimo_1047 a60720c6326b7bb1bebaf9b93bef50d2 204 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 3 197 27.907 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Thimo_1047 a60720c6326b7bb1bebaf9b93bef50d2 204 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 6 188 3.5E-55 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Thimo_1047 a60720c6326b7bb1bebaf9b93bef50d2 204 SUPERFAMILY SSF52540 5 191 4.17E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1760 d1d3104bc0452d47654f580cf7ae5af2 331 SUPERFAMILY SSF53850 21 319 2.72E-70 T 14-10-2018 Thimo_1760 d1d3104bc0452d47654f580cf7ae5af2 331 Pfam PF13343 Bacterial extracellular solute-binding protein 75 311 1.4E-26 T 14-10-2018 Thimo_1760 d1d3104bc0452d47654f580cf7ae5af2 331 PIRSF PIRSF002825 12 331 1.4E-82 T 14-10-2018 IPR026045 Ferric binding protein Thimo_1760 d1d3104bc0452d47654f580cf7ae5af2 331 Gene3D G3DSA:3.40.190.10 24 294 3.9E-83 T 14-10-2018 Thimo_1760 d1d3104bc0452d47654f580cf7ae5af2 331 Gene3D G3DSA:3.40.190.10 124 317 3.9E-83 T 14-10-2018 Thimo_1760 d1d3104bc0452d47654f580cf7ae5af2 331 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 119 136 - T 14-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.3E-43 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 SUPERFAMILY SSF54913 1 112 1.78E-45 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 PIRSF PIRSF039144 1 112 8.7E-55 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 PRINTS PR00340 P-II protein signature 2 17 2.1E-43 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 PRINTS PR00340 P-II protein signature 52 75 2.1E-43 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 PRINTS PR00340 P-II protein signature 23 41 2.1E-43 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 PRINTS PR00340 P-II protein signature 83 103 2.1E-43 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 Gene3D G3DSA:3.30.70.120 1 112 2.5E-47 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 14-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 14-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 Thimo_2188 e2a6c65b10364ac8e5211e364a76b0cc 112 SMART SM00938 4 105 4.8E-69 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_3281 e96e59f6c28ab3912330e2458c6a3c35 120 Gene3D G3DSA:3.30.2020.30 1 96 3.2E-28 T 14-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 Thimo_3281 e96e59f6c28ab3912330e2458c6a3c35 120 Pfam PF06155 Protein of unknown function (DUF971) 8 91 8.1E-31 T 14-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 Thimo_2831 a25a57468b12d1046c0ced0ae6db3eb4 330 Gene3D G3DSA:3.40.50.720 128 295 1.9E-112 T 14-10-2018 Thimo_2831 a25a57468b12d1046c0ced0ae6db3eb4 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 6 328 1.4E-123 T 14-10-2018 IPR014188 Acrylyl-CoA reductase AcuI Thimo_2831 a25a57468b12d1046c0ced0ae6db3eb4 330 Pfam PF00107 Zinc-binding dehydrogenase 161 279 2.9E-12 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Thimo_2831 a25a57468b12d1046c0ced0ae6db3eb4 330 Gene3D G3DSA:3.90.180.10 19 326 1.9E-112 T 14-10-2018 Thimo_2831 a25a57468b12d1046c0ced0ae6db3eb4 330 SUPERFAMILY SSF50129 6 141 5.02E-39 T 14-10-2018 IPR011032 GroES-like superfamily Thimo_2831 a25a57468b12d1046c0ced0ae6db3eb4 330 SMART SM00829 18 326 4.0E-7 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Thimo_2831 a25a57468b12d1046c0ced0ae6db3eb4 330 SUPERFAMILY SSF51735 118 295 2.91E-32 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1521 2ab7c186629930c3705f37c7e2e1faf0 62 SUPERFAMILY SSF69047 1 60 7.72E-23 T 14-10-2018 IPR036629 YjbJ superfamily Thimo_1521 2ab7c186629930c3705f37c7e2e1faf0 62 PIRSF PIRSF039008 1 62 1.2E-27 T 14-10-2018 IPR026042 Stress response protein YjbJ Thimo_1521 2ab7c186629930c3705f37c7e2e1faf0 62 Gene3D G3DSA:1.10.1470.10 1 62 1.1E-26 T 14-10-2018 IPR036629 YjbJ superfamily Thimo_1521 2ab7c186629930c3705f37c7e2e1faf0 62 Pfam PF05532 CsbD-like 4 56 7.6E-17 T 14-10-2018 IPR008462 CsbD-like domain Thimo_1735 c59da038e9a60ed09a7e5a1a061dda03 305 Gene3D G3DSA:3.90.1170.20 29 295 1.2E-106 T 14-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 Thimo_1735 c59da038e9a60ed09a7e5a1a061dda03 305 SUPERFAMILY SSF54675 23 130 3.61E-31 T 14-10-2018 Thimo_1735 c59da038e9a60ed09a7e5a1a061dda03 305 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 33 296 1.2E-89 T 14-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 Thimo_1735 c59da038e9a60ed09a7e5a1a061dda03 305 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 42 129 4.1E-25 T 14-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Thimo_1735 c59da038e9a60ed09a7e5a1a061dda03 305 PIRSF PIRSF006250 27 298 8.4E-92 T 14-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 Thimo_1735 c59da038e9a60ed09a7e5a1a061dda03 305 SUPERFAMILY SSF51690 132 296 8.24E-56 T 14-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Thimo_1735 c59da038e9a60ed09a7e5a1a061dda03 305 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 132 295 1.0E-52 T 14-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 Thimo_1735 c59da038e9a60ed09a7e5a1a061dda03 305 Gene3D G3DSA:3.20.20.70 140 286 1.2E-106 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0468 56adc73cac172052df36f1fbfb802723 92 Gene3D G3DSA:1.10.150.250 4 86 6.2E-27 T 14-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily Thimo_0468 56adc73cac172052df36f1fbfb802723 92 Pfam PF03937 Flavinator of succinate dehydrogenase 12 80 5.4E-23 T 14-10-2018 IPR005631 Flavinator of succinate dehydrogenase Thimo_0468 56adc73cac172052df36f1fbfb802723 92 SUPERFAMILY SSF109910 7 82 3.53E-20 T 14-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 SMART SM00388 291 349 9.1E-9 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 392 494 3.2E-25 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 SUPERFAMILY SSF55874 348 495 7.2E-39 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 Pfam PF00672 HAMP domain 238 286 1.4E-6 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 347 7.2E-8 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 494 1.5E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 475 1.5E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 436 1.5E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 450 1.5E-17 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 SUPERFAMILY SSF47384 275 348 3.92E-11 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 SMART SM00387 388 495 7.4E-34 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 Gene3D G3DSA:1.10.287.130 236 344 2.1E-17 T 14-10-2018 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 SMART SM00304 238 290 1.1E-7 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Thimo_2360 31ea2e2b96e66f9236bd9b64f80bc79c 495 Gene3D G3DSA:3.30.565.10 354 495 1.9E-36 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_2717 b7f0181842c450a960967403622bff1e 698 SUPERFAMILY SSF52540 2 297 1.45E-14 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2717 b7f0181842c450a960967403622bff1e 698 Gene3D G3DSA:3.40.50.300 1 330 3.9E-26 T 14-10-2018 Thimo_2717 b7f0181842c450a960967403622bff1e 698 Gene3D G3DSA:3.40.50.300 359 620 6.5E-8 T 14-10-2018 Thimo_2717 b7f0181842c450a960967403622bff1e 698 Pfam PF13476 AAA domain 5 294 5.5E-21 T 14-10-2018 IPR038729 Rad50/SbcC-type AAA domain Thimo_0576 6fa8f2b1038c75e8b6636be74b49f089 268 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 143 260 5.0E-35 T 14-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal Thimo_0576 6fa8f2b1038c75e8b6636be74b49f089 268 Gene3D G3DSA:1.25.40.10 143 264 1.8E-31 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0576 6fa8f2b1038c75e8b6636be74b49f089 268 Gene3D G3DSA:1.20.5.110 22 87 5.2E-5 T 14-10-2018 Thimo_0576 6fa8f2b1038c75e8b6636be74b49f089 268 Pfam PF16331 TolA binding protein trimerisation 24 75 5.1E-10 T 14-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 Thimo_0576 6fa8f2b1038c75e8b6636be74b49f089 268 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 3 263 18.943 T 14-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 Thimo_0576 6fa8f2b1038c75e8b6636be74b49f089 268 SUPERFAMILY SSF48452 145 250 3.13E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0576 6fa8f2b1038c75e8b6636be74b49f089 268 Pfam PF13525 Outer membrane lipoprotein 143 221 1.3E-12 T 14-10-2018 IPR039565 Outer membrane lipoprotein BamD-like Thimo_0509 5b468264c708db336d041b77c3b4f323 120 SUPERFAMILY SSF47226 3 110 7.98E-22 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 Thimo_0509 5b468264c708db336d041b77c3b4f323 120 Pfam PF01627 Hpt domain 27 106 1.4E-12 T 14-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Thimo_0509 5b468264c708db336d041b77c3b4f323 120 Gene3D G3DSA:1.20.120.160 1 112 1.2E-21 T 14-10-2018 IPR036641 HPT domain superfamily GO:0000160 Thimo_3187 be72cb957cb04e40b04acfabfc4b155e 207 Pfam PF01618 MotA/TolQ/ExbB proton channel family 88 191 4.9E-25 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Thimo_3015 c5115881020542ba9ecb1002862fcde0 343 Gene3D G3DSA:3.40.50.300 3 208 2.8E-65 T 14-10-2018 Thimo_3015 c5115881020542ba9ecb1002862fcde0 343 Gene3D G3DSA:1.10.8.80 253 342 1.5E-28 T 14-10-2018 Thimo_3015 c5115881020542ba9ecb1002862fcde0 343 SMART SM00382 28 211 3.0E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3015 c5115881020542ba9ecb1002862fcde0 343 SUPERFAMILY SSF52540 5 333 3.55E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3015 c5115881020542ba9ecb1002862fcde0 343 TIGRFAM TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I 5 341 1.7E-153 T 14-10-2018 IPR011775 Magnesium chelatase, ATPase subunit I GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3015 c5115881020542ba9ecb1002862fcde0 343 Pfam PF01078 Magnesium chelatase, subunit ChlI 118 188 1.3E-8 T 14-10-2018 IPR000523 Magnesium chelatase ChlI domain Thimo_3290 ab303f558e3e227d653f5ac436b750ea 176 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 8 163 8.6E-47 T 14-10-2018 IPR026353 Hypoxanthine-DNA glycosylase Thimo_3290 ab303f558e3e227d653f5ac436b750ea 176 Pfam PF03167 Uracil DNA glycosylase superfamily 14 164 5.3E-8 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_3290 ab303f558e3e227d653f5ac436b750ea 176 Gene3D G3DSA:3.40.470.10 4 173 5.5E-52 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_3290 ab303f558e3e227d653f5ac436b750ea 176 SMART SM00986 9 167 6.9E-9 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_3290 ab303f558e3e227d653f5ac436b750ea 176 SUPERFAMILY SSF52141 8 167 1.57E-32 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_3290 ab303f558e3e227d653f5ac436b750ea 176 SMART SM00987 9 167 6.9E-9 T 14-10-2018 Thimo_1269 0e18eae0488d820f471ee9d82feb3088 365 Pfam PF03116 NQR2, RnfD, RnfE family 12 346 7.2E-105 T 14-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 Thimo_1269 0e18eae0488d820f471ee9d82feb3088 365 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 7 348 26.035 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Thimo_1269 0e18eae0488d820f471ee9d82feb3088 365 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 13 347 1.9E-113 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Thimo_2888 fdca39f240861b9319681d84739128a7 262 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 35 62 - T 14-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 Thimo_2888 fdca39f240861b9319681d84739128a7 262 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 3 256 2.4E-79 T 14-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Thimo_2888 fdca39f240861b9319681d84739128a7 262 Gene3D G3DSA:3.40.50.150 1 191 5.0E-61 T 14-10-2018 Thimo_2888 fdca39f240861b9319681d84739128a7 262 Gene3D G3DSA:1.10.8.100 194 259 6.2E-23 T 14-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 Thimo_2888 fdca39f240861b9319681d84739128a7 262 Pfam PF00398 Ribosomal RNA adenine dimethylase 4 255 8.6E-53 T 14-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Thimo_2888 fdca39f240861b9319681d84739128a7 262 SMART SM00650 19 191 9.4E-75 T 14-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 Thimo_2888 fdca39f240861b9319681d84739128a7 262 SUPERFAMILY SSF53335 3 259 8.92E-73 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2888 fdca39f240861b9319681d84739128a7 262 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 3 258 54.614 T 14-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Thimo_3501 b0900637ad6672e5f08ad442238cde82 139 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 92 136 5.1E-13 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3501 b0900637ad6672e5f08ad442238cde82 139 Pfam PF00460 Flagella basal body rod protein 7 34 8.6E-9 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Thimo_3501 b0900637ad6672e5f08ad442238cde82 139 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 139 2.8E-47 T 14-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 Thimo_3501 b0900637ad6672e5f08ad442238cde82 139 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 14-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Thimo_2095 fb0e8ce7dd9177bef1817e3a04867497 373 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 15 370 37.381 T 14-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Thimo_2095 fb0e8ce7dd9177bef1817e3a04867497 373 Gene3D G3DSA:2.40.30.10 290 373 1.6E-24 T 14-10-2018 Thimo_2095 fb0e8ce7dd9177bef1817e3a04867497 373 Gene3D G3DSA:2.30.30.280 221 288 3.6E-24 T 14-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Thimo_2095 fb0e8ce7dd9177bef1817e3a04867497 373 Pfam PF03054 tRNA methyl transferase 16 369 1.3E-130 T 14-10-2018 Thimo_2095 fb0e8ce7dd9177bef1817e3a04867497 373 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 16 369 6.9E-128 T 14-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Thimo_2095 fb0e8ce7dd9177bef1817e3a04867497 373 SUPERFAMILY SSF52402 14 252 1.35E-56 T 14-10-2018 Thimo_2095 fb0e8ce7dd9177bef1817e3a04867497 373 Gene3D G3DSA:3.40.50.620 5 220 1.6E-87 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0866 6f3717c1bad7ea09950a98f246d68958 264 Pfam PF00156 Phosphoribosyl transferase domain 68 193 5.2E-7 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Thimo_0866 6f3717c1bad7ea09950a98f246d68958 264 SUPERFAMILY SSF53271 41 194 1.7E-14 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_0866 6f3717c1bad7ea09950a98f246d68958 264 Gene3D G3DSA:3.40.50.2020 62 236 2.2E-16 T 14-10-2018 Thimo_0445 a7e295a222ea581097b88b018142509f 260 Gene3D G3DSA:3.60.10.10 2 246 2.8E-36 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Thimo_0445 a7e295a222ea581097b88b018142509f 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 235 6.0E-13 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Thimo_0445 a7e295a222ea581097b88b018142509f 260 SUPERFAMILY SSF56219 4 242 3.66E-31 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Thimo_1159 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 SMART SM00382 46 187 2.5E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1159 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 SUPERFAMILY SSF52540 32 295 8.75E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1159 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 Gene3D G3DSA:3.40.50.300 13 210 1.3E-45 T 14-10-2018 Thimo_1159 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 49 179 2.4E-61 T 14-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Thimo_1159 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 PIRSF PIRSF002849 5 319 2.1E-113 T 14-10-2018 Thimo_1159 e5a6d343bbb0078b9a8c83d6a72d0e1a 319 Gene3D G3DSA:1.10.8.300 211 314 1.2E-20 T 14-10-2018 Thimo_3720 ad82786b9239bda49272a7b9a23a1231 1305 Pfam PF13871 C-terminal domain on Strawberry notch homologue 997 1199 1.6E-63 T 14-10-2018 IPR026937 Strawberry notch, helicase C domain Thimo_3720 ad82786b9239bda49272a7b9a23a1231 1305 SUPERFAMILY SSF53335 136 324 1.02E-14 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3720 ad82786b9239bda49272a7b9a23a1231 1305 Pfam PF13872 P-loop containing NTP hydrolase pore-1 518 831 5.9E-115 T 14-10-2018 IPR039187 Strawberry notch, AAA domain Thimo_3720 ad82786b9239bda49272a7b9a23a1231 1305 Gene3D G3DSA:3.40.50.150 134 297 1.3E-6 T 14-10-2018 Thimo_3720 ad82786b9239bda49272a7b9a23a1231 1305 Gene3D G3DSA:3.40.50.300 548 760 2.2E-6 T 14-10-2018 Thimo_3720 ad82786b9239bda49272a7b9a23a1231 1305 SUPERFAMILY SSF52540 549 773 1.51E-15 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0722 a1ec85b86558cc2229fc38b898634692 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.606 T 14-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Thimo_0722 a1ec85b86558cc2229fc38b898634692 185 Pfam PF01765 Ribosome recycling factor 20 183 2.9E-63 T 14-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Thimo_0722 a1ec85b86558cc2229fc38b898634692 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 4.6E-72 T 14-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Thimo_0722 a1ec85b86558cc2229fc38b898634692 185 Gene3D G3DSA:1.10.132.20 12 182 1.7E-67 T 14-10-2018 Thimo_0722 a1ec85b86558cc2229fc38b898634692 185 Gene3D G3DSA:3.30.1360.40 31 105 1.7E-67 T 14-10-2018 Thimo_0722 a1ec85b86558cc2229fc38b898634692 185 SUPERFAMILY SSF55194 3 183 3.14E-70 T 14-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 Thimo_0503 243ec0b57489598c43e6cda19e07ce2a 255 Gene3D G3DSA:3.30.950.10 144 254 7.4E-43 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Thimo_0503 243ec0b57489598c43e6cda19e07ce2a 255 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 2 250 7.1E-95 T 14-10-2018 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376 Thimo_0503 243ec0b57489598c43e6cda19e07ce2a 255 PIRSF PIRSF036525 1 255 4.9E-98 T 14-10-2018 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376 Thimo_0503 243ec0b57489598c43e6cda19e07ce2a 255 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 224 1.6E-27 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Thimo_0503 243ec0b57489598c43e6cda19e07ce2a 255 SUPERFAMILY SSF53790 2 249 1.7E-33 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Thimo_0503 243ec0b57489598c43e6cda19e07ce2a 255 Gene3D G3DSA:3.40.1010.10 1 143 1.5E-35 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Thimo_2709 76b4c20f010f1181771bec558229d42b 315 Gene3D G3DSA:3.40.710.10 50 313 6.4E-34 T 14-10-2018 Thimo_2709 76b4c20f010f1181771bec558229d42b 315 Pfam PF13354 Beta-lactamase enzyme family 127 264 8.4E-16 T 14-10-2018 Thimo_2709 76b4c20f010f1181771bec558229d42b 315 SUPERFAMILY SSF56601 70 306 1.44E-26 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Thimo_2448 8a002da8a4f10da22e608ec62cd703f0 381 Gene3D G3DSA:3.40.630.30 177 328 4.8E-6 T 14-10-2018 Thimo_2448 8a002da8a4f10da22e608ec62cd703f0 381 SUPERFAMILY SSF55729 179 353 3.36E-38 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_2448 8a002da8a4f10da22e608ec62cd703f0 381 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 10 378 4.7E-154 T 14-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 Gene3D G3DSA:1.20.1440.230 329 425 4.1E-34 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 169 184 - T 14-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 SUPERFAMILY SSF142019 4 241 2.35E-85 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 14-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 SUPERFAMILY SSF140490 328 422 4.84E-37 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 Pfam PF10531 SLBB domain 245 293 1.8E-14 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 SMART SM00928 331 376 3.5E-28 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 50 221 6.8E-47 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 10 416 9.1E-194 T 14-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 Gene3D G3DSA:3.10.20.600 234 328 4.8E-33 T 14-10-2018 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 Gene3D G3DSA:3.40.50.11540 55 233 4.3E-80 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 333 414 1.6E-31 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0590 af82f19d1f6cc880b89764c354b4e237 425 SUPERFAMILY SSF142984 243 325 8.24E-25 T 14-10-2018 Thimo_1881 4944427866f1c56715bab1fce4a3e95c 174 Gene3D G3DSA:2.60.40.1890 36 148 3.6E-36 T 14-10-2018 IPR036182 Copper chaperone PCuAC superfamily Thimo_1881 4944427866f1c56715bab1fce4a3e95c 174 Pfam PF04314 Copper chaperone PCu(A)C 32 137 7.3E-35 T 14-10-2018 IPR007410 Copper chaperone PCuAC Thimo_1881 4944427866f1c56715bab1fce4a3e95c 174 SUPERFAMILY SSF110087 6 147 8.11E-43 T 14-10-2018 IPR036182 Copper chaperone PCuAC superfamily Thimo_0740 793bbe09c70dbde3377d5edc4df273a8 155 SUPERFAMILY SSF51283 8 154 1.96E-48 T 14-10-2018 IPR036157 dUTPase-like superfamily Thimo_0740 793bbe09c70dbde3377d5edc4df273a8 155 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 10 154 31.586 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Thimo_0740 793bbe09c70dbde3377d5edc4df273a8 155 Gene3D G3DSA:2.70.40.10 2 154 1.1E-47 T 14-10-2018 IPR036157 dUTPase-like superfamily Thimo_0740 793bbe09c70dbde3377d5edc4df273a8 155 Pfam PF00692 dUTPase 21 153 1.1E-34 T 14-10-2018 IPR029054 dUTPase-like Thimo_0740 793bbe09c70dbde3377d5edc4df273a8 155 TIGRFAM TIGR00576 dut: dUTP diphosphatase 13 154 2.3E-44 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Thimo_1840 6a4ac7ce2bd0c5b7adc7dd3c24bb867e 187 Pfam PF01814 Hemerythrin HHE cation binding domain 5 137 4.2E-13 T 14-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Thimo_1840 6a4ac7ce2bd0c5b7adc7dd3c24bb867e 187 Gene3D G3DSA:1.20.120.520 1 155 4.0E-23 T 14-10-2018 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 867 9.3E-173 T 14-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Pfam PF14579 Helix-hairpin-helix motif 769 861 1.8E-21 T 14-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Gene3D G3DSA:3.20.20.140 1 251 1.9E-65 T 14-10-2018 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Gene3D G3DSA:1.10.10.1600 409 457 1.3E-5 T 14-10-2018 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 1 1031 13.027 T 14-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 274 695 1.1E-135 T 14-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 SUPERFAMILY SSF89550 8 182 2.35E-10 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 Pfam PF02811 PHP domain 6 124 4.5E-19 T 14-10-2018 IPR004013 PHP domain GO:0003824 Thimo_1619 cee6f62a5993c08bbbf4db0e1611eb6a 1031 SMART SM00481 2 69 4.8E-18 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Thimo_3379 a458983b560d2d447025e333596fbe26 326 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 20 312 2.9E-69 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Thimo_3379 a458983b560d2d447025e333596fbe26 326 SUPERFAMILY SSF52540 48 188 1.04E-12 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3379 a458983b560d2d447025e333596fbe26 326 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 14 320 2.8E-105 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Thimo_3379 a458983b560d2d447025e333596fbe26 326 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 321 38.89 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Thimo_3447 84c94660d863d5ee839ebe72324307f4 231 SMART SM00953 85 209 2.1E-28 T 14-10-2018 IPR014914 RES domain Thimo_3447 84c94660d863d5ee839ebe72324307f4 231 Pfam PF08808 RES domain 82 217 3.0E-25 T 14-10-2018 IPR014914 RES domain Thimo_2469 4c4b0cefbaff4987cbf6b906c950eb8d 392 Pfam PF01610 Transposase 276 388 4.3E-8 T 14-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain Thimo_2469 4c4b0cefbaff4987cbf6b906c950eb8d 392 Pfam PF00487 Fatty acid desaturase 10 213 6.2E-11 T 14-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 Thimo_2945 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 230 251 1.0E-27 T 14-10-2018 Thimo_2945 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 319 331 1.0E-27 T 14-10-2018 Thimo_2945 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 162 183 1.0E-27 T 14-10-2018 Thimo_2945 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 87 112 1.0E-27 T 14-10-2018 Thimo_2945 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 115 135 1.0E-27 T 14-10-2018 Thimo_2945 674972c36d03fd2ce335ac41af844a68 549 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 252 278 1.0E-27 T 14-10-2018 Thimo_2945 674972c36d03fd2ce335ac41af844a68 549 Pfam PF00361 Proton-conducting membrane transporter 138 355 1.2E-46 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2945 674972c36d03fd2ce335ac41af844a68 549 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 79 124 1.6E-9 T 14-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 Pfam PF04060 Putative Fe-S cluster 48 81 1.2E-10 T 14-10-2018 IPR007202 4Fe-4S domain GO:0051536 Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 221 232 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 Gene3D G3DSA:3.30.70.20 141 197 4.2E-12 T 14-10-2018 Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 176 187 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 8 198 26.432 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 SUPERFAMILY SSF54862 146 196 5.2E-14 T 14-10-2018 Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 Gene3D G3DSA:3.30.70.20 216 273 5.9E-9 T 14-10-2018 Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 SUPERFAMILY SSF54862 221 280 1.37E-10 T 14-10-2018 Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 Pfam PF12838 4Fe-4S dicluster domain 146 190 1.2E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 12 199 1.4E-27 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Thimo_0229 bf717f3fe537d77b2bd6ce441f7934e0 302 Gene3D G3DSA:3.20.20.20 40 109 4.3E-9 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 Gene3D G3DSA:1.10.287.610 95 146 1.7E-24 T 14-10-2018 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 Pfam PF00318 Ribosomal protein S2 4 219 2.1E-95 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 PRINTS PR00395 Ribosomal protein S2 signature 32 41 1.5E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 PRINTS PR00395 Ribosomal protein S2 signature 170 181 1.5E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 PRINTS PR00395 Ribosomal protein S2 signature 191 205 1.5E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 PRINTS PR00395 Ribosomal protein S2 signature 1 19 1.5E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 PRINTS PR00395 Ribosomal protein S2 signature 82 99 1.5E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 PRINTS PR00395 Ribosomal protein S2 signature 153 170 1.5E-37 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 SUPERFAMILY SSF52313 1 222 1.96E-94 T 14-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 153 177 - T 14-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 1 220 40.282 T 14-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 1 12 - T 14-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Thimo_0719 36fb52a7c6cab490a83309bc06d9f4a7 244 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 1 221 8.5E-103 T 14-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0689 0dac89e23a1443f0134d96391d08f699 380 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 344 1.7E-135 T 14-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 Thimo_0689 0dac89e23a1443f0134d96391d08f699 380 SMART SM00382 122 258 3.5E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0689 0dac89e23a1443f0134d96391d08f699 380 SUPERFAMILY SSF52540 4 338 3.39E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0689 0dac89e23a1443f0134d96391d08f699 380 Gene3D G3DSA:3.40.50.300 100 358 9.9E-86 T 14-10-2018 Thimo_0689 0dac89e23a1443f0134d96391d08f699 380 Gene3D G3DSA:3.30.450.90 1 99 1.4E-28 T 14-10-2018 Thimo_0689 0dac89e23a1443f0134d96391d08f699 380 Pfam PF00437 Type II/IV secretion system protein 9 249 1.2E-35 T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 235 262 2.4E-84 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 49 70 2.4E-84 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 126 148 2.4E-84 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 32 48 2.4E-84 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 263 289 2.4E-84 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 163 192 2.4E-84 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PRINTS PR00073 Coprogen oxidase signature 91 115 2.4E-84 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 SUPERFAMILY SSF102886 7 303 3.27E-131 T 14-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 167 191 - T 14-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 Gene3D G3DSA:3.40.1500.10 3 303 1.9E-128 T 14-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 PIRSF PIRSF000166 2 304 1.4E-120 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 Pfam PF01218 Coproporphyrinogen III oxidase 10 303 1.2E-125 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_0836 c7c4e55ed875c5e0fa7eb8f4be479c16 312 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 4 278 55.33 T 14-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Thimo_2657 da84b43e3772fb70d5e0b8445532f787 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 1.4E-28 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2657 da84b43e3772fb70d5e0b8445532f787 87 Gene3D G3DSA:1.20.58.110 1 86 4.6E-30 T 14-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2657 da84b43e3772fb70d5e0b8445532f787 87 Pfam PF01649 Ribosomal protein S20 2 84 8.6E-28 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2657 da84b43e3772fb70d5e0b8445532f787 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.368 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2657 da84b43e3772fb70d5e0b8445532f787 87 SUPERFAMILY SSF46992 3 86 1.28E-31 T 14-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2657 da84b43e3772fb70d5e0b8445532f787 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 86 3.0E-23 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_1196 60549b1d785434deeac1649820042562 421 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 16 402 1.6E-120 T 14-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 Thimo_1196 60549b1d785434deeac1649820042562 421 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 16 402 2.1E-120 T 14-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 Thimo_1196 60549b1d785434deeac1649820042562 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 5.4E-17 T 14-10-2018 Thimo_1196 60549b1d785434deeac1649820042562 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 307 323 5.4E-17 T 14-10-2018 Thimo_1196 60549b1d785434deeac1649820042562 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 16 38 5.4E-17 T 14-10-2018 Thimo_1196 60549b1d785434deeac1649820042562 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 307 5.4E-17 T 14-10-2018 Thimo_1196 60549b1d785434deeac1649820042562 421 Pfam PF01494 FAD binding domain 15 351 2.0E-27 T 14-10-2018 IPR002938 FAD-binding domain GO:0071949 Thimo_1196 60549b1d785434deeac1649820042562 421 SUPERFAMILY SSF51905 14 396 4.5E-50 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1196 60549b1d785434deeac1649820042562 421 Gene3D G3DSA:3.50.50.60 16 350 2.6E-98 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1196 60549b1d785434deeac1649820042562 421 Gene3D G3DSA:3.30.9.50 89 281 2.6E-98 T 14-10-2018 Thimo_1196 60549b1d785434deeac1649820042562 421 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 306 319 - T 14-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 Thimo_2419 8c9117552476b77e9d1f14f2c6169ce0 189 Pfam PF11086 Protein of unknown function (DUF2878) 4 158 1.5E-44 T 14-10-2018 IPR021306 Protein of unknown function DUF2878 Thimo_1532 60216ed57ff22008cd1783e9b5211c07 205 SUPERFAMILY SSF53335 31 173 4.72E-15 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1532 60216ed57ff22008cd1783e9b5211c07 205 Gene3D G3DSA:3.40.50.150 19 194 3.8E-25 T 14-10-2018 Thimo_1532 60216ed57ff22008cd1783e9b5211c07 205 Pfam PF10294 Lysine methyltransferase 35 149 1.9E-10 T 14-10-2018 IPR019410 Lysine methyltransferase Thimo_2708 0f9d9fc6d08340e6b88c4b064170518d 146 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 4 127 1.0E-34 T 14-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Thimo_2708 0f9d9fc6d08340e6b88c4b064170518d 146 Pfam PF01814 Hemerythrin HHE cation binding domain 13 123 9.2E-11 T 14-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Thimo_2708 0f9d9fc6d08340e6b88c4b064170518d 146 Gene3D G3DSA:1.20.120.50 1 134 8.5E-34 T 14-10-2018 IPR035938 Hemerythrin-like superfamily Thimo_2708 0f9d9fc6d08340e6b88c4b064170518d 146 ProSitePatterns PS00550 Hemerythrin family signature. 57 80 - T 14-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Thimo_2708 0f9d9fc6d08340e6b88c4b064170518d 146 SUPERFAMILY SSF47188 2 129 1.31E-28 T 14-10-2018 IPR035938 Hemerythrin-like superfamily Thimo_0190 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 SUPERFAMILY SSF52096 88 285 1.79E-26 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_0190 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 Gene3D G3DSA:3.40.1750.20 188 252 1.7E-37 T 14-10-2018 Thimo_0190 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 Gene3D G3DSA:3.90.226.10 123 287 1.7E-37 T 14-10-2018 Thimo_0190 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 Pfam PF01343 Peptidase family S49 148 295 7.1E-42 T 14-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Thimo_0190 82fdc18f2b4871dd1cd0c5ffe0c6700a 325 Pfam PF08496 Peptidase family S49 N-terminal 3 144 2.8E-41 T 14-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 Thimo_3024 65e991514bfe8cde849df10543518823 521 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 472 516 1.1E-19 T 14-10-2018 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3024 65e991514bfe8cde849df10543518823 521 Gene3D G3DSA:1.10.8.550 471 521 6.3E-22 T 14-10-2018 Thimo_3024 65e991514bfe8cde849df10543518823 521 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 13 413 7.7E-81 T 14-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Thimo_3024 65e991514bfe8cde849df10543518823 521 SUPERFAMILY SSF53807 3 432 1.83E-108 T 14-10-2018 Thimo_3024 65e991514bfe8cde849df10543518823 521 TIGRFAM TIGR01278 DPOR_BchB: light-independent protochlorophyllide reductase, B subunit 1 519 8.9E-185 T 14-10-2018 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3024 65e991514bfe8cde849df10543518823 521 Gene3D G3DSA:3.40.50.1980 157 244 1.7E-30 T 14-10-2018 Thimo_3024 65e991514bfe8cde849df10543518823 521 Gene3D G3DSA:3.40.50.1980 1 147 2.0E-46 T 14-10-2018 Thimo_3024 65e991514bfe8cde849df10543518823 521 Hamap MF_00353 Light-independent protochlorophyllide reductase subunit B [bchB]. 1 520 51.643 T 14-10-2018 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3024 65e991514bfe8cde849df10543518823 521 Gene3D G3DSA:3.40.50.1980 264 443 3.8E-79 T 14-10-2018 Thimo_3024 65e991514bfe8cde849df10543518823 521 PIRSF PIRSF000163 1 521 2.4E-211 T 14-10-2018 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_3301 ae342d801aefd279cd14a254c3fc1210 108 SUPERFAMILY SSF89360 1 97 1.15E-28 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Thimo_3301 ae342d801aefd279cd14a254c3fc1210 108 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 89 106 - T 14-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 Thimo_3301 ae342d801aefd279cd14a254c3fc1210 108 Gene3D G3DSA:2.60.300.12 2 108 1.6E-33 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Thimo_3301 ae342d801aefd279cd14a254c3fc1210 108 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 104 1.5E-17 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Thimo_3301 ae342d801aefd279cd14a254c3fc1210 108 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 108 5.0E-34 T 14-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 Pfam PF00462 Glutaredoxin 173 231 6.9E-17 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 Gene3D G3DSA:3.40.30.10 5 166 9.5E-61 T 14-10-2018 Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 Pfam PF08534 Redoxin 7 160 1.1E-31 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 241 9.8E-32 T 14-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 PRINTS PR00160 Glutaredoxin signature 214 227 2.7E-12 T 14-10-2018 IPR014025 Glutaredoxin subgroup Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 PRINTS PR00160 Glutaredoxin signature 228 241 2.7E-12 T 14-10-2018 IPR014025 Glutaredoxin subgroup Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 PRINTS PR00160 Glutaredoxin signature 173 191 2.7E-12 T 14-10-2018 IPR014025 Glutaredoxin subgroup Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 14-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 Gene3D G3DSA:3.40.30.10 172 241 1.1E-21 T 14-10-2018 Thimo_1042 b2ab5032b50af7d5f9e7bb0bc70247ae 247 SUPERFAMILY SSF52833 6 240 6.9E-43 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0662 e2cc8abd93a08777240492ffa8f21600 396 Gene3D G3DSA:1.20.1420.20 31 372 2.6E-61 T 14-10-2018 IPR038352 Imelysin-like domain superfamily Thimo_0662 e2cc8abd93a08777240492ffa8f21600 396 Pfam PF09375 Imelysin 53 343 1.2E-41 T 14-10-2018 IPR018976 Imelysin-like domain Thimo_2651 ee302ee4796211a40b759b280b00906b 267 Pfam PF01416 tRNA pseudouridine synthase 3 99 2.8E-9 T 14-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2651 ee302ee4796211a40b759b280b00906b 267 Pfam PF01416 tRNA pseudouridine synthase 139 241 3.0E-29 T 14-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2651 ee302ee4796211a40b759b280b00906b 267 Gene3D G3DSA:3.30.70.660 102 239 4.2E-49 T 14-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 Thimo_2651 ee302ee4796211a40b759b280b00906b 267 PIRSF PIRSF001430 1 256 6.7E-74 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2651 ee302ee4796211a40b759b280b00906b 267 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 240 31.664 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2651 ee302ee4796211a40b759b280b00906b 267 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 235 1.4E-63 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2651 ee302ee4796211a40b759b280b00906b 267 SUPERFAMILY SSF55120 2 247 3.02E-86 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2651 ee302ee4796211a40b759b280b00906b 267 Gene3D G3DSA:3.30.70.580 1 101 1.3E-35 T 14-10-2018 Thimo_0595 71721a30ace326669eec3c45bcf01e73 101 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 96 1.4E-24 T 14-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Thimo_0595 71721a30ace326669eec3c45bcf01e73 101 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 101 20.261 T 14-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 Thimo_2157 cf358b03e727d37aa8ef1097cc2dbd0d 448 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 263 446 1.6E-15 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_2157 cf358b03e727d37aa8ef1097cc2dbd0d 448 SUPERFAMILY SSF161098 239 428 4.71E-11 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2157 cf358b03e727d37aa8ef1097cc2dbd0d 448 Gene3D G3DSA:1.10.3720.10 233 447 1.9E-10 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_3769 2238a9fecda005b3c72fe54706fe307e 80 SUPERFAMILY SSF142921 13 76 1.7E-7 T 14-10-2018 IPR036930 WGR domain superfamily Thimo_3769 2238a9fecda005b3c72fe54706fe307e 80 Pfam PF05406 WGR domain 12 77 3.9E-7 T 14-10-2018 IPR008893 WGR domain Thimo_1940 1eaaf16888dc1f8943cfb2b17d6770cd 107 Gene3D G3DSA:1.10.1660.10 15 107 6.2E-27 T 14-10-2018 Thimo_1940 1eaaf16888dc1f8943cfb2b17d6770cd 107 Pfam PF13591 MerR HTH family regulatory protein 20 103 1.1E-18 T 14-10-2018 Thimo_2445 6218c955108bdc846e235ec17af9a5e9 220 Gene3D G3DSA:2.50.20.10 37 213 2.1E-46 T 14-10-2018 Thimo_2445 6218c955108bdc846e235ec17af9a5e9 220 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 22 219 24.401 T 14-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 Thimo_2445 6218c955108bdc846e235ec17af9a5e9 220 SUPERFAMILY SSF89392 38 210 8.63E-40 T 14-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Thimo_2445 6218c955108bdc846e235ec17af9a5e9 220 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 23 211 1.2E-15 T 14-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 Thimo_2445 6218c955108bdc846e235ec17af9a5e9 220 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 47 209 5.5E-41 T 14-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like Thimo_0112 2565e29c2a95acf0bd2787358bf2a643 142 SMART SM00450 10 125 2.6E-14 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_0112 2565e29c2a95acf0bd2787358bf2a643 142 SUPERFAMILY SSF52821 5 141 6.02E-21 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_0112 2565e29c2a95acf0bd2787358bf2a643 142 Pfam PF00581 Rhodanese-like domain 10 117 2.9E-12 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_0112 2565e29c2a95acf0bd2787358bf2a643 142 Gene3D G3DSA:3.40.250.10 6 142 1.7E-31 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_3505 cfbc42db8f5bd93cc9f51bb9cf0a46c4 228 Pfam PF07722 Peptidase C26 49 204 2.0E-48 T 14-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 Thimo_3505 cfbc42db8f5bd93cc9f51bb9cf0a46c4 228 SUPERFAMILY SSF52317 8 226 1.6E-38 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_3505 cfbc42db8f5bd93cc9f51bb9cf0a46c4 228 Gene3D G3DSA:3.40.50.880 5 228 1.8E-56 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1769 59da516a71e2cad18b05b800f8867677 70 Pfam PF12728 Helix-turn-helix domain 16 60 2.4E-8 T 14-10-2018 Thimo_1769 59da516a71e2cad18b05b800f8867677 70 SUPERFAMILY SSF46955 13 64 3.24E-10 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Thimo_2754 35376cd8e9abfe0e980603a6d6a8880a 259 Pfam PF02405 Permease MlaE 44 255 6.6E-75 T 14-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 Thimo_2754 35376cd8e9abfe0e980603a6d6a8880a 259 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 41 257 2.5E-83 T 14-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Thimo_0402 924727390293bb20bc0cd6b30acd9fba 358 Gene3D G3DSA:3.20.20.70 1 358 1.8E-131 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0402 924727390293bb20bc0cd6b30acd9fba 358 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 335 3.2E-91 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Thimo_0402 924727390293bb20bc0cd6b30acd9fba 358 SUPERFAMILY SSF51395 2 356 1.0E-114 T 14-10-2018 Thimo_3681 39f725e9995cafdb7adc6e8d6756f226 170 Pfam PF13511 Domain of unknown function (DUF4124) 10 58 7.2E-11 T 14-10-2018 IPR025392 Domain of unknown function DUF4124 Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 Gene3D G3DSA:3.40.50.720 7 251 7.8E-68 T 14-10-2018 Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 247 1.2E-48 T 14-10-2018 Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 SUPERFAMILY SSF51735 10 249 7.71E-69 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 1.2E-7 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 1.2E-7 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 1.2E-7 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.5E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.5E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.5E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.5E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.5E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0562 e1b22aa518e5bf7ab503e4a9c288c85c 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.5E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_1448 8da2cc2ab310baff17e53b99a7c616da 390 Gene3D G3DSA:3.40.50.2000 26 208 7.9E-12 T 14-10-2018 Thimo_1448 8da2cc2ab310baff17e53b99a7c616da 390 Pfam PF00534 Glycosyl transferases group 1 213 322 3.9E-18 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1448 8da2cc2ab310baff17e53b99a7c616da 390 Pfam PF13439 Glycosyltransferase Family 4 40 189 7.7E-13 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1448 8da2cc2ab310baff17e53b99a7c616da 390 SUPERFAMILY SSF53756 28 375 8.97E-49 T 14-10-2018 Thimo_1448 8da2cc2ab310baff17e53b99a7c616da 390 Gene3D G3DSA:3.40.50.2000 209 365 2.5E-26 T 14-10-2018 Thimo_3192 6805019225d3b7fc6ab35bd46b114f91 120 SUPERFAMILY SSF57362 37 90 1.56E-10 T 14-10-2018 IPR036880 Pancreatic trypsin inhibitor Kunitz domain superfamily GO:0004867 Thimo_3192 6805019225d3b7fc6ab35bd46b114f91 120 Pfam PF00014 Kunitz/Bovine pancreatic trypsin inhibitor domain 40 89 9.6E-8 T 14-10-2018 IPR002223 Pancreatic trypsin inhibitor Kunitz domain GO:0004867 Thimo_3192 6805019225d3b7fc6ab35bd46b114f91 120 Gene3D G3DSA:4.10.410.10 35 91 6.5E-10 T 14-10-2018 IPR036880 Pancreatic trypsin inhibitor Kunitz domain superfamily GO:0004867 Thimo_2374 65ee8421c84b64f50afb05806c83cee8 350 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 231 341 1.9E-8 T 14-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_2374 65ee8421c84b64f50afb05806c83cee8 350 Gene3D G3DSA:3.40.50.300 20 191 6.6E-54 T 14-10-2018 Thimo_2374 65ee8421c84b64f50afb05806c83cee8 350 Pfam PF13177 DNA polymerase III, delta subunit 28 191 4.3E-42 T 14-10-2018 Thimo_2374 65ee8421c84b64f50afb05806c83cee8 350 SUPERFAMILY SSF52540 22 227 5.54E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2374 65ee8421c84b64f50afb05806c83cee8 350 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 29 223 1.5E-58 T 14-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Thimo_0664 736378a12745878fc32a5e4f167fe43e 388 Gene3D G3DSA:3.30.1330.40 87 248 7.4E-8 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_0664 736378a12745878fc32a5e4f167fe43e 388 Gene3D G3DSA:3.30.1330.40 266 384 4.6E-22 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_0664 736378a12745878fc32a5e4f167fe43e 388 Pfam PF01042 Endoribonuclease L-PSP 279 377 1.9E-8 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Thimo_0664 736378a12745878fc32a5e4f167fe43e 388 SUPERFAMILY SSF55298 145 241 8.08E-5 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_0664 736378a12745878fc32a5e4f167fe43e 388 SUPERFAMILY SSF55298 279 379 3.7E-18 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 Gene3D G3DSA:1.10.1040.10 180 336 1.3E-57 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 SUPERFAMILY SSF48179 182 334 1.02E-36 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 184 216 1.2E-9 T 14-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 SUPERFAMILY SSF51735 1 156 2.27E-44 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 14-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 SMART SM01350 184 335 7.9E-6 T 14-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 Gene3D G3DSA:3.40.50.720 1 179 5.4E-52 T 14-10-2018 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 23 2.1E-14 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 58 87 2.1E-14 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 111 136 2.1E-14 T 14-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 335 5.6E-128 T 14-10-2018 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 Thimo_3039 b02764c3b539f74314725da75fcf70cb 338 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 152 1.6E-40 T 14-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Thimo_2240 8057e397275a38476cce171d8770ef5f 369 Pfam PF07705 CARDB 86 224 2.4E-10 T 14-10-2018 IPR011635 CARDB domain Thimo_2240 8057e397275a38476cce171d8770ef5f 369 Gene3D G3DSA:2.60.40.10 160 232 1.5E-5 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 2.6E-64 T 14-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 Gene3D G3DSA:3.30.1550.10 2 72 1.0E-35 T 14-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 Gene3D G3DSA:1.10.10.2720 73 144 2.2E-25 T 14-10-2018 Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 SUPERFAMILY SSF54747 3 73 1.19E-30 T 14-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-15 T 14-10-2018 Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 SUPERFAMILY SSF46906 68 141 1.18E-24 T 14-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 1.5E-30 T 14-10-2018 IPR020784 Ribosomal protein L11, N-terminal Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 SMART SM00649 9 141 7.3E-81 T 14-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.2E-22 T 14-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Thimo_2871 6679c7fffc185cdd2b4d4e462cff30f7 144 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.295 T 14-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Thimo_0026 f76387ee9b28b9292088315ea4f36b5b 78 SUPERFAMILY SSF143120 3 42 1.96E-7 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_0026 f76387ee9b28b9292088315ea4f36b5b 78 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 41 2.9E-8 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_0026 f76387ee9b28b9292088315ea4f36b5b 78 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 42 4.1E-7 T 14-10-2018 Thimo_2803 7dcd6f10e7bf37cd289c93d7e2296118 242 Gene3D G3DSA:3.30.1150.10 142 241 2.3E-25 T 14-10-2018 Thimo_2803 7dcd6f10e7bf37cd289c93d7e2296118 242 SUPERFAMILY SSF74653 161 238 7.98E-24 T 14-10-2018 Thimo_2803 7dcd6f10e7bf37cd289c93d7e2296118 242 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 162 240 3.4E-23 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 Thimo_2803 7dcd6f10e7bf37cd289c93d7e2296118 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 100 110 5.7E-5 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Thimo_2803 7dcd6f10e7bf37cd289c93d7e2296118 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 158 179 5.7E-5 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Thimo_2803 7dcd6f10e7bf37cd289c93d7e2296118 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 179 197 5.7E-5 T 14-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 Thimo_2803 7dcd6f10e7bf37cd289c93d7e2296118 242 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 164 240 3.2E-24 T 14-10-2018 IPR006260 TonB/TolA, C-terminal Thimo_1601 c36055dd18964f1f2da84408c6622e1e 348 SUPERFAMILY SSF110296 42 238 6.28E-5 T 14-10-2018 Thimo_1601 c36055dd18964f1f2da84408c6622e1e 348 Gene3D G3DSA:2.130.10.10 110 279 2.7E-6 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_2086 6815be8af0682fdf708f928750dacdd9 194 SUPERFAMILY SSF55811 5 177 2.84E-36 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_2086 6815be8af0682fdf708f928750dacdd9 194 ProSitePatterns PS00893 Nudix box signature. 77 98 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Thimo_2086 6815be8af0682fdf708f928750dacdd9 194 Pfam PF00293 NUDIX domain 45 157 3.4E-16 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_2086 6815be8af0682fdf708f928750dacdd9 194 Gene3D G3DSA:3.90.79.10 5 187 1.3E-42 T 14-10-2018 Thimo_0145 cfadd05752c4049af2b86fdbf131995f 130 Pfam PF02635 DsrE/DsrF-like family 1 128 4.5E-29 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein Thimo_0145 cfadd05752c4049af2b86fdbf131995f 130 Gene3D G3DSA:3.40.1260.10 1 130 4.4E-56 T 14-10-2018 IPR027396 DsrEFH-like Thimo_0145 cfadd05752c4049af2b86fdbf131995f 130 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 2 128 9.5E-51 T 14-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 Thimo_0145 cfadd05752c4049af2b86fdbf131995f 130 SUPERFAMILY SSF75169 1 128 1.41E-39 T 14-10-2018 IPR027396 DsrEFH-like Thimo_2811 bea390a508b4f362471216ea70161d1b 904 Pfam PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB 127 903 8.6E-109 T 14-10-2018 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB Thimo_2811 bea390a508b4f362471216ea70161d1b 904 SUPERFAMILY SSF56935 587 871 4.12E-5 T 14-10-2018 Thimo_2811 bea390a508b4f362471216ea70161d1b 904 SUPERFAMILY SSF56935 397 729 3.48E-5 T 14-10-2018 Thimo_1321 94ab3e66c8085caeef2b9ec23f4a6f2a 548 SUPERFAMILY SSF52317 288 541 2.15E-86 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1321 94ab3e66c8085caeef2b9ec23f4a6f2a 548 SUPERFAMILY SSF52540 3 269 1.52E-122 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1321 94ab3e66c8085caeef2b9ec23f4a6f2a 548 Gene3D G3DSA:3.40.50.880 286 545 8.0E-100 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1321 94ab3e66c8085caeef2b9ec23f4a6f2a 548 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 5.7E-247 T 14-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Thimo_1321 94ab3e66c8085caeef2b9ec23f4a6f2a 548 Gene3D G3DSA:3.40.50.300 1 284 3.5E-131 T 14-10-2018 Thimo_1321 94ab3e66c8085caeef2b9ec23f4a6f2a 548 Pfam PF00117 Glutamine amidotransferase class-I 301 535 1.1E-54 T 14-10-2018 IPR017926 Glutamine amidotransferase Thimo_1321 94ab3e66c8085caeef2b9ec23f4a6f2a 548 Pfam PF06418 CTP synthase N-terminus 4 266 1.2E-124 T 14-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Thimo_1321 94ab3e66c8085caeef2b9ec23f4a6f2a 548 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.627 T 14-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Thimo_1980 f4320f9242e8ea5c0a5e551482bdb8ab 404 Gene3D G3DSA:2.40.50.100 86 229 4.0E-70 T 14-10-2018 Thimo_1980 f4320f9242e8ea5c0a5e551482bdb8ab 404 SUPERFAMILY SSF111369 76 317 1.2E-61 T 14-10-2018 Thimo_1980 f4320f9242e8ea5c0a5e551482bdb8ab 404 Gene3D G3DSA:2.40.30.170 80 303 4.0E-70 T 14-10-2018 Thimo_1980 f4320f9242e8ea5c0a5e551482bdb8ab 404 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 62 392 1.4E-79 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Thimo_1980 f4320f9242e8ea5c0a5e551482bdb8ab 404 Gene3D G3DSA:1.10.287.470 121 194 4.0E-70 T 14-10-2018 Thimo_1980 f4320f9242e8ea5c0a5e551482bdb8ab 404 Gene3D G3DSA:2.40.420.20 304 394 5.9E-22 T 14-10-2018 Thimo_0350 565b1b2ba70f7bc315fc725b3640660f 277 Pfam PF05239 PRC-barrel domain 89 157 7.6E-10 T 14-10-2018 IPR027275 PRC-barrel domain Thimo_0350 565b1b2ba70f7bc315fc725b3640660f 277 SUPERFAMILY SSF50346 79 175 2.98E-12 T 14-10-2018 IPR011033 PRC-barrel-like superfamily Thimo_0350 565b1b2ba70f7bc315fc725b3640660f 277 Gene3D G3DSA:2.30.30.240 76 167 5.6E-19 T 14-10-2018 Thimo_1649 319b5fb4e13476aedf999e468412cc4d 410 SUPERFAMILY SSF81648 283 403 3.49E-30 T 14-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Thimo_1649 319b5fb4e13476aedf999e468412cc4d 410 PIRSF PIRSF038885 1 410 1.4E-163 T 14-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 Thimo_1649 319b5fb4e13476aedf999e468412cc4d 410 Pfam PF00033 Cytochrome b/b6/petB 28 214 5.6E-68 T 14-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Thimo_1649 319b5fb4e13476aedf999e468412cc4d 410 SUPERFAMILY SSF81342 14 282 5.02E-98 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_1649 319b5fb4e13476aedf999e468412cc4d 410 Gene3D G3DSA:1.20.810.10 2 410 3.9E-157 T 14-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 Thimo_1649 319b5fb4e13476aedf999e468412cc4d 410 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 280 386 1.9E-41 T 14-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Thimo_1328 33d7e3a021a703bf0ac6df883d138c6d 181 SUPERFAMILY SSF160443 90 170 3.14E-15 T 14-10-2018 IPR036063 Smr domain superfamily Thimo_1328 33d7e3a021a703bf0ac6df883d138c6d 181 SMART SM00463 88 170 2.9E-12 T 14-10-2018 IPR002625 Smr domain Thimo_1328 33d7e3a021a703bf0ac6df883d138c6d 181 Pfam PF01713 Smr domain 91 170 9.3E-26 T 14-10-2018 IPR002625 Smr domain Thimo_1328 33d7e3a021a703bf0ac6df883d138c6d 181 Gene3D G3DSA:3.30.1370.110 47 176 1.6E-41 T 14-10-2018 Thimo_1744 b77d9ccb300a1968dc1d35bd7fe81128 161 Gene3D G3DSA:2.60.40.790 12 160 2.9E-36 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_1744 b77d9ccb300a1968dc1d35bd7fe81128 161 Pfam PF00011 Hsp20/alpha crystallin family 62 160 3.9E-22 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Thimo_1744 b77d9ccb300a1968dc1d35bd7fe81128 161 SUPERFAMILY SSF49764 27 160 7.07E-37 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_3161 56c220dc8fa7ba6d366c4e088a1c750a 552 Pfam PF00990 Diguanylate cyclase, GGDEF domain 395 550 1.6E-42 T 14-10-2018 IPR000160 GGDEF domain Thimo_3161 56c220dc8fa7ba6d366c4e088a1c750a 552 Pfam PF02743 Cache domain 123 347 6.0E-16 T 14-10-2018 IPR033479 Double Cache domain 1 Thimo_3161 56c220dc8fa7ba6d366c4e088a1c750a 552 Gene3D G3DSA:3.30.70.270 389 552 7.5E-53 T 14-10-2018 Thimo_3161 56c220dc8fa7ba6d366c4e088a1c750a 552 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 391 551 1.3E-46 T 14-10-2018 IPR000160 GGDEF domain Thimo_3161 56c220dc8fa7ba6d366c4e088a1c750a 552 Gene3D G3DSA:3.30.450.20 229 363 2.8E-12 T 14-10-2018 Thimo_3161 56c220dc8fa7ba6d366c4e088a1c750a 552 SUPERFAMILY SSF55073 400 551 5.02E-44 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_3161 56c220dc8fa7ba6d366c4e088a1c750a 552 SMART SM00267 384 552 1.7E-53 T 14-10-2018 IPR000160 GGDEF domain Thimo_0963 40420c92fda304205af8ecb8dcb8e5f4 346 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 3 342 26.378 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Thimo_0963 40420c92fda304205af8ecb8dcb8e5f4 346 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 341 1.7E-125 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Thimo_0963 40420c92fda304205af8ecb8dcb8e5f4 346 Pfam PF03116 NQR2, RnfD, RnfE family 6 340 5.3E-105 T 14-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 Thimo_1673 4977eccdab600d0965594833d17926c2 573 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1673 4977eccdab600d0965594833d17926c2 573 SUPERFAMILY SSF52540 7 229 2.32E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1673 4977eccdab600d0965594833d17926c2 573 SUPERFAMILY SSF52540 325 547 1.63E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1673 4977eccdab600d0965594833d17926c2 573 SMART SM00382 35 242 2.0E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1673 4977eccdab600d0965594833d17926c2 573 SMART SM00382 353 543 3.7E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1673 4977eccdab600d0965594833d17926c2 573 Gene3D G3DSA:3.40.50.300 322 552 3.4E-67 T 14-10-2018 Thimo_1673 4977eccdab600d0965594833d17926c2 573 Pfam PF00005 ABC transporter 345 488 3.1E-25 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1673 4977eccdab600d0965594833d17926c2 573 Pfam PF00005 ABC transporter 25 169 1.2E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1673 4977eccdab600d0965594833d17926c2 573 Gene3D G3DSA:3.40.50.300 6 242 1.5E-59 T 14-10-2018 Thimo_3676 2ef38a8d55c01f6580c1c7919eeffa39 315 SUPERFAMILY SSF51395 5 312 6.96E-78 T 14-10-2018 Thimo_3676 2ef38a8d55c01f6580c1c7919eeffa39 315 Gene3D G3DSA:3.20.20.70 20 303 1.1E-84 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3676 2ef38a8d55c01f6580c1c7919eeffa39 315 Pfam PF01180 Dihydroorotate dehydrogenase 11 295 1.7E-65 T 14-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Thimo_3676 2ef38a8d55c01f6580c1c7919eeffa39 315 PIRSF PIRSF000164 1 313 3.3E-74 T 14-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Thimo_3676 2ef38a8d55c01f6580c1c7919eeffa39 315 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 11 310 3.6E-97 T 14-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Thimo_3676 2ef38a8d55c01f6580c1c7919eeffa39 315 Gene3D G3DSA:2.30.26.10 64 224 1.1E-84 T 14-10-2018 IPR023359 Dihydroorotate dehydrogenase A, chain A, domain 2 Thimo_3676 2ef38a8d55c01f6580c1c7919eeffa39 315 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 11 312 36.266 T 14-10-2018 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 Thimo_3676 2ef38a8d55c01f6580c1c7919eeffa39 315 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 250 270 - T 14-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Thimo_2527 6b26eb3571a8cc5e65e5ce4dc4472a36 438 SUPERFAMILY SSF161098 214 425 1.44E-35 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2527 6b26eb3571a8cc5e65e5ce4dc4472a36 438 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 239 434 3.1E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_2527 6b26eb3571a8cc5e65e5ce4dc4472a36 438 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 196 435 3.0E-60 T 14-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Thimo_2527 6b26eb3571a8cc5e65e5ce4dc4472a36 438 Pfam PF11812 Domain of unknown function (DUF3333) 23 172 2.2E-58 T 14-10-2018 IPR024573 Domain of unknown function DUF3333 Thimo_2527 6b26eb3571a8cc5e65e5ce4dc4472a36 438 Gene3D G3DSA:1.10.3720.10 213 437 3.8E-32 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0055 3a3fc83f73acfe2c2b71df718c2de546 553 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 8 441 2.4E-178 T 14-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 Thimo_0055 3a3fc83f73acfe2c2b71df718c2de546 553 Pfam PF03109 ABC1 family 113 231 5.8E-35 T 14-10-2018 IPR004147 UbiB domain Thimo_0055 3a3fc83f73acfe2c2b71df718c2de546 553 SUPERFAMILY SSF56112 95 433 1.95E-49 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_0055 3a3fc83f73acfe2c2b71df718c2de546 553 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 4 545 51.6 T 14-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 Thimo_0048 016ddf085712abda7111d2b8f12c5d94 139 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 35 4.2E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0048 016ddf085712abda7111d2b8f12c5d94 139 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 33 5.7E-4 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0048 016ddf085712abda7111d2b8f12c5d94 139 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 13 33 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3163 8fa3aa394b233414223f0481fabd7153 224 Pfam PF00857 Isochorismatase family 28 215 6.5E-34 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 Thimo_3163 8fa3aa394b233414223f0481fabd7153 224 Gene3D G3DSA:3.40.50.850 14 223 9.3E-51 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Thimo_3163 8fa3aa394b233414223f0481fabd7153 224 SUPERFAMILY SSF52499 8 221 3.53E-50 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Thimo_2689 51fea5c4745fd7e754fe5bfe0fbd9c26 434 Pfam PF03882 MukF winged-helix domain 12 113 5.8E-10 T 14-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain Thimo_2689 51fea5c4745fd7e754fe5bfe0fbd9c26 434 SUPERFAMILY SSF140570 117 277 1.09E-51 T 14-10-2018 IPR036141 MukF, middle domain superfamily Thimo_2689 51fea5c4745fd7e754fe5bfe0fbd9c26 434 Pfam PF17192 MukF middle domain 125 277 7.4E-26 T 14-10-2018 IPR033440 Chromosome partition protein MukF, middle domain Thimo_2689 51fea5c4745fd7e754fe5bfe0fbd9c26 434 SUPERFAMILY SSF46785 6 114 2.79E-31 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2689 51fea5c4745fd7e754fe5bfe0fbd9c26 434 Gene3D G3DSA:1.20.58.590 117 306 1.0E-66 T 14-10-2018 IPR036141 MukF, middle domain superfamily Thimo_3423 daab307cc41bb2b280e90bb9a44e8d1e 833 SUPERFAMILY SSF46626 473 833 2.78E-7 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_3414 649a5f4326e4e03c5d636b69bd0885f5 112 SUPERFAMILY SSF81301 5 112 2.04E-13 T 14-10-2018 Thimo_3414 649a5f4326e4e03c5d636b69bd0885f5 112 Pfam PF01909 Nucleotidyltransferase domain 12 52 2.2E-6 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Thimo_3414 649a5f4326e4e03c5d636b69bd0885f5 112 Gene3D G3DSA:3.30.460.10 1 103 3.1E-10 T 14-10-2018 Thimo_3652 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 208 3.9E-93 T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Thimo_3652 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Thimo_3652 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 PIRSF PIRSF001461 1 228 5.0E-98 T 14-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Thimo_3652 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 1.5E-89 T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Thimo_3652 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Thimo_3652 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 SUPERFAMILY SSF51366 5 207 2.41E-70 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Thimo_3652 dd0dd4c0e5b2f7fec229eab3c73f14f8 230 Gene3D G3DSA:3.20.20.70 1 218 3.4E-81 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1408 f43d134a7ef2505bb92fd2d973a2d25e 363 Gene3D G3DSA:3.40.50.300 12 168 1.5E-15 T 14-10-2018 Thimo_1408 f43d134a7ef2505bb92fd2d973a2d25e 363 SUPERFAMILY SSF52540 14 217 1.58E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1408 f43d134a7ef2505bb92fd2d973a2d25e 363 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 30 106 5.7E-5 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_1408 f43d134a7ef2505bb92fd2d973a2d25e 363 SMART SM00382 25 165 0.0046 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2989 ac220505954e6d2773ea0919a4107f84 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 1.9E-5 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2989 ac220505954e6d2773ea0919a4107f84 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 1.9E-5 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2989 ac220505954e6d2773ea0919a4107f84 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 1.9E-5 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2989 ac220505954e6d2773ea0919a4107f84 64 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 23 41 - T 14-10-2018 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 Thimo_2989 ac220505954e6d2773ea0919a4107f84 64 Gene3D G3DSA:4.10.220.20 1 54 9.7E-17 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2989 ac220505954e6d2773ea0919a4107f84 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 3.3E-13 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2989 ac220505954e6d2773ea0919a4107f84 64 SUPERFAMILY SSF56918 1 45 4.71E-12 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_3289 4eaf5415866a57d316e56c95576978f4 481 Gene3D G3DSA:3.30.530.20 322 478 8.4E-8 T 14-10-2018 IPR023393 START-like domain superfamily Thimo_3289 4eaf5415866a57d316e56c95576978f4 481 Pfam PF13460 NAD(P)H-binding 7 110 3.9E-14 T 14-10-2018 IPR016040 NAD(P)-binding domain Thimo_3289 4eaf5415866a57d316e56c95576978f4 481 Pfam PF11066 Protein of unknown function (DUF2867) 333 461 1.4E-20 T 14-10-2018 IPR021295 Protein of unknown function DUF2867 Thimo_3289 4eaf5415866a57d316e56c95576978f4 481 SUPERFAMILY SSF51735 1 291 3.38E-46 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3289 4eaf5415866a57d316e56c95576978f4 481 SUPERFAMILY SSF55961 324 471 2.26E-14 T 14-10-2018 Thimo_3289 4eaf5415866a57d316e56c95576978f4 481 Gene3D G3DSA:3.40.50.720 2 304 1.4E-38 T 14-10-2018 Thimo_3059 612acef36225bf253c05c8a6f1780f44 148 Gene3D G3DSA:3.40.50.2000 1 142 2.2E-7 T 14-10-2018 Thimo_3059 612acef36225bf253c05c8a6f1780f44 148 Pfam PF08660 Oligosaccharide biosynthesis protein Alg14 like 61 138 1.5E-12 T 14-10-2018 IPR013969 Oligosaccharide biosynthesis protein Alg14-like GO:0006488 Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Thimo_3059 612acef36225bf253c05c8a6f1780f44 148 SUPERFAMILY SSF53756 1 105 2.28E-6 T 14-10-2018 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 25 778 0.0 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 452 774 5.3E-153 T 14-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 PIRSF PIRSF000382 19 781 0.0 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 Gene3D G3DSA:3.20.20.210 410 777 0.0 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 SUPERFAMILY SSF51726 417 777 5.23E-119 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 SUPERFAMILY SSF51726 21 415 4.58E-113 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 22 336 1.5E-114 T 14-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 20 779 37.416 T 14-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Thimo_1455 b41ed110c829c8556f8ec86b4cfa8512 781 Gene3D G3DSA:3.20.20.210 24 545 0.0 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Thimo_1253 bb1dae962db2566d529aeb495bcc6a2f 379 SUPERFAMILY SSF81345 13 269 2.22E-26 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Thimo_1253 bb1dae962db2566d529aeb495bcc6a2f 379 Pfam PF00950 ABC 3 transport family 9 274 8.1E-74 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Thimo_3452 b8f4c151caa2e693fbcff2e1a5b3e1b0 447 SUPERFAMILY SSF116734 14 227 5.4E-37 T 14-10-2018 Thimo_3452 b8f4c151caa2e693fbcff2e1a5b3e1b0 447 Gene3D G3DSA:3.90.220.20 23 443 1.4E-60 T 14-10-2018 Thimo_3452 b8f4c151caa2e693fbcff2e1a5b3e1b0 447 Gene3D G3DSA:1.10.287.1120 174 440 1.4E-60 T 14-10-2018 Thimo_3452 b8f4c151caa2e693fbcff2e1a5b3e1b0 447 Gene3D G3DSA:3.90.220.20 246 393 1.4E-60 T 14-10-2018 Thimo_3452 b8f4c151caa2e693fbcff2e1a5b3e1b0 447 SUPERFAMILY SSF116734 226 443 8.99E-32 T 14-10-2018 Thimo_3452 b8f4c151caa2e693fbcff2e1a5b3e1b0 447 Pfam PF01420 Type I restriction modification DNA specificity domain 88 201 4.9E-7 T 14-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Thimo_1805 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 Gene3D G3DSA:3.30.420.10 1 180 5.9E-70 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_1805 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 Pfam PF00929 Exonuclease 9 170 2.6E-29 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_1805 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 SUPERFAMILY SSF53098 1 179 2.53E-44 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1805 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 SMART SM00479 7 180 2.2E-19 T 14-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Thimo_1805 c0a15e5d1a694aeaccd7f7c4ab0beb51 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 41.784 T 14-10-2018 IPR022894 Oligoribonuclease GO:0000175 Thimo_3744 38638f9f91d0714b93491a35a427978a 386 Pfam PF13635 Domain of unknown function (DUF4143) 178 335 3.0E-23 T 14-10-2018 IPR025420 Domain of unknown function DUF4143 Thimo_3744 38638f9f91d0714b93491a35a427978a 386 Pfam PF13173 AAA domain 19 138 4.0E-22 T 14-10-2018 Thimo_3744 38638f9f91d0714b93491a35a427978a 386 SMART SM00382 16 187 0.0015 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3744 38638f9f91d0714b93491a35a427978a 386 Gene3D G3DSA:3.40.50.300 6 71 8.5E-7 T 14-10-2018 Thimo_3744 38638f9f91d0714b93491a35a427978a 386 SUPERFAMILY SSF52540 17 180 7.57E-15 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 Gene3D G3DSA:3.40.50.300 168 332 1.9E-110 T 14-10-2018 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 Gene3D G3DSA:3.30.70.3280 447 586 1.6E-48 T 14-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 116 131 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 Pfam PF00009 Elongation factor Tu GTP binding domain 71 334 6.1E-48 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 Pfam PF16658 Class II release factor RF3, C-terminal domain 444 571 5.2E-44 T 14-10-2018 IPR032090 Peptide chain release factor 3, C-terminal Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 62 585 5.1E-256 T 14-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 62 584 52.454 T 14-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 SUPERFAMILY SSF52540 68 334 1.3E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 73 211 1.0E-19 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 Gene3D G3DSA:3.40.50.300 130 436 1.9E-110 T 14-10-2018 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 Pfam PF03144 Elongation factor Tu domain 2 371 437 2.4E-8 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 SUPERFAMILY SSF50447 318 449 7.51E-30 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 SUPERFAMILY SSF54980 449 525 1.29E-15 T 14-10-2018 IPR035647 EF-G domain III/V-like Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 PRINTS PR00315 GTP-binding elongation factor signature 159 170 4.5E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 PRINTS PR00315 GTP-binding elongation factor signature 123 131 4.5E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 PRINTS PR00315 GTP-binding elongation factor signature 73 86 4.5E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 PRINTS PR00315 GTP-binding elongation factor signature 143 153 4.5E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_2579 adc9954fb0c5cfadcda543f70955805c 586 PRINTS PR00315 GTP-binding elongation factor signature 195 204 4.5E-11 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Thimo_3713 ee087d242eb1d1aadc2805ab93d90b78 323 TIGRFAM TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA 12 315 1.9E-111 T 14-10-2018 IPR023927 2,3-diaminopropionate biosynthesis protein SbnA Thimo_3713 ee087d242eb1d1aadc2805ab93d90b78 323 Gene3D G3DSA:3.40.50.1100 49 155 1.8E-89 T 14-10-2018 Thimo_3713 ee087d242eb1d1aadc2805ab93d90b78 323 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 37 55 - T 14-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Thimo_3713 ee087d242eb1d1aadc2805ab93d90b78 323 SUPERFAMILY SSF53686 10 317 3.8E-78 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_3713 ee087d242eb1d1aadc2805ab93d90b78 323 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 15 301 1.3E-59 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_3713 ee087d242eb1d1aadc2805ab93d90b78 323 Gene3D G3DSA:3.40.50.1100 14 307 1.8E-89 T 14-10-2018 Thimo_1873 a26c25f62b99f422c615896260342d2e 330 SUPERFAMILY SSF48695 22 260 1.68E-25 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_1873 a26c25f62b99f422c615896260342d2e 330 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 223 256 1.9E-4 T 14-10-2018 IPR010177 Doubled CXXCH motif Thimo_1873 a26c25f62b99f422c615896260342d2e 330 Pfam PF14522 Cytochrome c7 and related cytochrome c 103 191 3.0E-6 T 14-10-2018 IPR029467 C-type polyheme cytochrome OmcB Thimo_1873 a26c25f62b99f422c615896260342d2e 330 Gene3D G3DSA:3.90.10.10 61 185 1.5E-6 T 14-10-2018 Thimo_0146 18c214650b738183e8af983f97822892 136 Pfam PF02635 DsrE/DsrF-like family 6 136 7.1E-24 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein Thimo_0146 18c214650b738183e8af983f97822892 136 Gene3D G3DSA:3.40.1260.10 1 136 5.4E-46 T 14-10-2018 IPR027396 DsrEFH-like Thimo_0146 18c214650b738183e8af983f97822892 136 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 7 100 1.3E-30 T 14-10-2018 IPR017462 Sulphur relay, TusC/DsrF Thimo_0146 18c214650b738183e8af983f97822892 136 SUPERFAMILY SSF75169 5 136 1.02E-38 T 14-10-2018 IPR027396 DsrEFH-like Thimo_3249 cecb0112a923a252d1f511264f78d6a1 92 SUPERFAMILY SSF54862 5 61 2.93E-13 T 14-10-2018 Thimo_3249 cecb0112a923a252d1f511264f78d6a1 92 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3249 cecb0112a923a252d1f511264f78d6a1 92 Gene3D G3DSA:3.30.70.20 2 67 4.6E-21 T 14-10-2018 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 Gene3D G3DSA:3.40.50.620 1 158 1.5E-55 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 SUPERFAMILY SSF52374 1 157 2.49E-42 T 14-10-2018 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 35.471 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 8.6E-51 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 8.6E-51 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 8.6E-51 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 8.6E-51 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 8.6E-51 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 61 2.1E-15 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 Pfam PF01467 Cytidylyltransferase-like 5 133 1.4E-21 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Thimo_3626 e9eaa7668fb595ae70c9fa3c171b816d 158 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 157 1.5E-58 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Thimo_0643 69eb0da4c136c3fc20c1c575be7c6096 285 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 35 2.3E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0643 69eb0da4c136c3fc20c1c575be7c6096 285 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 14 34 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0643 69eb0da4c136c3fc20c1c575be7c6096 285 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 35 2.4E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0643 69eb0da4c136c3fc20c1c575be7c6096 285 SUPERFAMILY SSF54523 16 73 2.04E-10 T 14-10-2018 Thimo_0643 69eb0da4c136c3fc20c1c575be7c6096 285 Gene3D G3DSA:3.30.700.10 16 75 5.9E-8 T 14-10-2018 Thimo_0873 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 SUPERFAMILY SSF55785 25 131 5.98E-29 T 14-10-2018 IPR035965 PAS domain superfamily Thimo_0873 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 SMART SM00086 89 131 9.4E-11 T 14-10-2018 IPR001610 PAC motif Thimo_0873 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 Gene3D G3DSA:3.30.450.20 15 151 3.8E-50 T 14-10-2018 Thimo_0873 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 Pfam PF13426 PAS domain 26 130 3.3E-23 T 14-10-2018 IPR000014 PAS domain Thimo_0873 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 SMART SM00091 14 83 6.4E-5 T 14-10-2018 IPR000014 PAS domain Thimo_0873 d8d58c3a9a2785b4cbe2ae35b9a7ba66 155 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 138 1.5E-22 T 14-10-2018 IPR000014 PAS domain Thimo_0661 9c7ee9d0e8388940f198731af042ed56 491 Gene3D G3DSA:1.10.760.10 356 489 1.7E-6 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0661 9c7ee9d0e8388940f198731af042ed56 491 SUPERFAMILY SSF46626 357 491 4.16E-19 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0661 9c7ee9d0e8388940f198731af042ed56 491 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 184 491 4.6E-51 T 14-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase Thimo_0661 9c7ee9d0e8388940f198731af042ed56 491 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 48 126 3.7E-9 T 14-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase Thimo_3766 89d9cdffd28415e5078263cc2106e616 331 Gene3D G3DSA:1.10.150.130 33 135 1.6E-13 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Thimo_3766 89d9cdffd28415e5078263cc2106e616 331 Pfam PF00589 Phage integrase family 141 318 1.1E-19 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Thimo_3766 89d9cdffd28415e5078263cc2106e616 331 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 46 113 5.6E-12 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Thimo_3766 89d9cdffd28415e5078263cc2106e616 331 Gene3D G3DSA:1.10.443.10 137 320 1.2E-31 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Thimo_3766 89d9cdffd28415e5078263cc2106e616 331 SUPERFAMILY SSF56349 35 320 1.03E-39 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Thimo_2955 be4de18f029bd4e0f4b6d782f94dc779 158 PRINTS PR00601 Bacterioferritin signature 89 109 1.7E-11 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2955 be4de18f029bd4e0f4b6d782f94dc779 158 PRINTS PR00601 Bacterioferritin signature 26 46 1.7E-11 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2955 be4de18f029bd4e0f4b6d782f94dc779 158 PRINTS PR00601 Bacterioferritin signature 6 25 1.7E-11 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2955 be4de18f029bd4e0f4b6d782f94dc779 158 PRINTS PR00601 Bacterioferritin signature 47 67 1.7E-11 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2955 be4de18f029bd4e0f4b6d782f94dc779 158 SUPERFAMILY SSF47240 7 146 9.1E-27 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_2955 be4de18f029bd4e0f4b6d782f94dc779 158 Gene3D G3DSA:1.20.1260.10 5 147 5.4E-29 T 14-10-2018 IPR012347 Ferritin-like Thimo_2955 be4de18f029bd4e0f4b6d782f94dc779 158 Pfam PF00210 Ferritin-like domain 14 146 5.1E-18 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Thimo_3269 9e598290ba2099e3e5fcca8f36524107 381 Gene3D G3DSA:3.40.50.11740 61 303 6.1E-103 T 14-10-2018 Thimo_3269 9e598290ba2099e3e5fcca8f36524107 381 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 369 1.3E-140 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 Thimo_3269 9e598290ba2099e3e5fcca8f36524107 381 Gene3D G3DSA:1.10.10.2140 317 368 1.5E-24 T 14-10-2018 Thimo_3269 9e598290ba2099e3e5fcca8f36524107 381 PIRSF PIRSF005622 1 371 3.8E-151 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 Thimo_3269 9e598290ba2099e3e5fcca8f36524107 381 Pfam PF01924 Hydrogenase formation hypA family 12 366 7.6E-149 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 Thimo_3269 9e598290ba2099e3e5fcca8f36524107 381 Gene3D G3DSA:3.40.50.11750 25 262 6.1E-103 T 14-10-2018 Thimo_1712 b0a9576d7223f55c110907a088c64af2 232 Gene3D G3DSA:3.20.20.70 3 231 1.3E-84 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1712 b0a9576d7223f55c110907a088c64af2 232 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 8 226 1.1E-58 T 14-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_1712 b0a9576d7223f55c110907a088c64af2 232 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 4 231 39.386 T 14-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_1712 b0a9576d7223f55c110907a088c64af2 232 SMART SM00934 6 226 3.4E-95 T 14-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_1712 b0a9576d7223f55c110907a088c64af2 232 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 6 225 3.9E-47 T 14-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_1712 b0a9576d7223f55c110907a088c64af2 232 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 58 71 - T 14-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_1712 b0a9576d7223f55c110907a088c64af2 232 SUPERFAMILY SSF51366 5 229 2.58E-74 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Thimo_0064 ac86c8b17a3016f049d29dd551ae6c0f 214 SUPERFAMILY SSF52507 10 207 1.22E-52 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Thimo_0064 ac86c8b17a3016f049d29dd551ae6c0f 214 Pfam PF02441 Flavoprotein 11 186 3.9E-21 T 14-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Thimo_0064 ac86c8b17a3016f049d29dd551ae6c0f 214 Gene3D G3DSA:3.40.50.1950 8 213 7.5E-76 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Thimo_0064 ac86c8b17a3016f049d29dd551ae6c0f 214 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 10 207 34.275 T 14-10-2018 IPR004507 Flavin prenyltransferase UbiX-like Thimo_0064 ac86c8b17a3016f049d29dd551ae6c0f 214 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 12 205 1.5E-57 T 14-10-2018 IPR004507 Flavin prenyltransferase UbiX-like Thimo_0029 6d98377a68c03e3f0655e62d0fd50166 316 Pfam PF13469 Sulfotransferase family 42 269 2.2E-12 T 14-10-2018 Thimo_0029 6d98377a68c03e3f0655e62d0fd50166 316 Gene3D G3DSA:3.40.50.300 7 276 3.6E-23 T 14-10-2018 Thimo_0029 6d98377a68c03e3f0655e62d0fd50166 316 SUPERFAMILY SSF52540 38 275 1.1E-12 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1542 aca4a3384c9f670916da6d3e4ffc21ff 364 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 154 250 1.6E-21 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Thimo_1542 aca4a3384c9f670916da6d3e4ffc21ff 364 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 172 358 1.8E-27 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_1542 aca4a3384c9f670916da6d3e4ffc21ff 364 Gene3D G3DSA:1.10.3720.10 147 362 2.6E-49 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1542 aca4a3384c9f670916da6d3e4ffc21ff 364 SUPERFAMILY SSF161098 152 344 9.29E-42 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1393 82d24b2fa8853f12c9e1482660734550 259 Pfam PF02080 TrkA-C domain 156 223 5.5E-11 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Thimo_1393 82d24b2fa8853f12c9e1482660734550 259 Gene3D G3DSA:3.30.70.1450 152 232 2.1E-13 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_1393 82d24b2fa8853f12c9e1482660734550 259 SUPERFAMILY SSF116726 143 224 2.22E-14 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SUPERFAMILY SSF48452 452 686 1.63E-17 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 547 580 120.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 683 716 120.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 751 784 180.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 445 478 34.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 615 648 90.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 649 682 90.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 821 854 220.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 513 546 90.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 479 512 170.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SMART SM00028 717 750 120.0 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Gene3D G3DSA:1.25.40.10 377 540 2.3E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 SUPERFAMILY SSF48452 683 849 3.8E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF13432 Tetratricopeptide repeat 485 538 0.018 T 14-10-2018 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 549 571 0.36 T 14-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 685 707 0.36 T 14-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 753 775 0.36 T 14-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 583 605 0.36 T 14-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Pfam PF07721 Tetratricopeptide repeat 719 741 0.36 T 14-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Gene3D G3DSA:1.25.40.10 541 611 4.3E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0498 d88e2c330b08af8edddd8ab211e77a23 967 Gene3D G3DSA:1.25.40.10 612 914 8.7E-27 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0469 e504c4ea31e93ae170fc6fb379638d2d 194 Gene3D G3DSA:1.10.1660.10 13 135 6.0E-30 T 14-10-2018 Thimo_0469 e504c4ea31e93ae170fc6fb379638d2d 194 SUPERFAMILY SSF46955 15 118 1.28E-26 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Thimo_0469 e504c4ea31e93ae170fc6fb379638d2d 194 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 52 72 4.9E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_0469 e504c4ea31e93ae170fc6fb379638d2d 194 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 28 4.9E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_0469 e504c4ea31e93ae170fc6fb379638d2d 194 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 28 41 4.9E-5 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_0469 e504c4ea31e93ae170fc6fb379638d2d 194 Pfam PF13411 MerR HTH family regulatory protein 17 84 1.3E-15 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_0469 e504c4ea31e93ae170fc6fb379638d2d 194 SMART SM00422 16 85 2.8E-20 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_1118 606f69850d596a12f6560ea138795938 318 PIRSF PIRSF002849 2 318 2.1E-125 T 14-10-2018 Thimo_1118 606f69850d596a12f6560ea138795938 318 Gene3D G3DSA:1.10.8.300 200 315 2.7E-34 T 14-10-2018 Thimo_1118 606f69850d596a12f6560ea138795938 318 SUPERFAMILY SSF52540 8 291 1.11E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1118 606f69850d596a12f6560ea138795938 318 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 36 166 9.3E-64 T 14-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Thimo_1118 606f69850d596a12f6560ea138795938 318 Gene3D G3DSA:3.40.50.300 17 183 1.2E-47 T 14-10-2018 Thimo_2367 1699b942d5f4912c4e7e1e36bb1faff1 106 Gene3D G3DSA:3.40.250.10 6 105 3.0E-25 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_2367 1699b942d5f4912c4e7e1e36bb1faff1 106 Pfam PF00581 Rhodanese-like domain 8 97 2.8E-14 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_2367 1699b942d5f4912c4e7e1e36bb1faff1 106 SUPERFAMILY SSF52821 3 104 6.02E-29 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_2367 1699b942d5f4912c4e7e1e36bb1faff1 106 SMART SM00450 6 101 2.8E-20 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_3444 60c65de973858843d8af7e79750fc57a 275 Gene3D G3DSA:2.60.40.790 173 275 3.6E-5 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_3444 60c65de973858843d8af7e79750fc57a 275 SUPERFAMILY SSF49764 175 254 1.46E-5 T 14-10-2018 IPR008978 HSP20-like chaperone Thimo_2387 995a154ed5f6e420710f859bf0e84aeb 393 Pfam PF13393 Histidyl-tRNA synthetase 11 321 7.0E-116 T 14-10-2018 Thimo_2387 995a154ed5f6e420710f859bf0e84aeb 393 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 18 374 32.641 T 14-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Thimo_2387 995a154ed5f6e420710f859bf0e84aeb 393 Gene3D G3DSA:3.30.930.10 4 325 2.8E-69 T 14-10-2018 Thimo_2387 995a154ed5f6e420710f859bf0e84aeb 393 PIRSF PIRSF001549 5 363 5.1E-40 T 14-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Thimo_2387 995a154ed5f6e420710f859bf0e84aeb 393 SUPERFAMILY SSF55681 8 319 4.04E-54 T 14-10-2018 Thimo_2387 995a154ed5f6e420710f859bf0e84aeb 393 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 14 323 6.5E-83 T 14-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Thimo_1358 3b63578cc24a603a410ce3db53fd8652 207 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1358 3b63578cc24a603a410ce3db53fd8652 207 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 201 1.4E-69 T 14-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 Thimo_1358 3b63578cc24a603a410ce3db53fd8652 207 Pfam PF00005 ABC transporter 20 158 2.5E-25 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1358 3b63578cc24a603a410ce3db53fd8652 207 SMART SM00382 26 204 2.2E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1358 3b63578cc24a603a410ce3db53fd8652 207 SUPERFAMILY SSF52540 2 189 1.96E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1358 3b63578cc24a603a410ce3db53fd8652 207 Gene3D G3DSA:3.40.50.300 1 204 8.5E-44 T 14-10-2018 Thimo_0477 f3e7fc81b82eee4074672c17db7685d3 281 Gene3D G3DSA:3.30.420.10 113 267 8.4E-16 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_0477 f3e7fc81b82eee4074672c17db7685d3 281 Pfam PF13276 HTH-like domain 40 96 5.8E-15 T 14-10-2018 IPR025948 HTH-like domain Thimo_0477 f3e7fc81b82eee4074672c17db7685d3 281 Pfam PF00665 Integrase core domain 118 229 3.0E-23 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_0477 f3e7fc81b82eee4074672c17db7685d3 281 SUPERFAMILY SSF53098 116 277 3.92E-49 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_3559 3a5cde4380fac9ef0842f596f1405695 236 Pfam PF10938 YfdX protein 76 223 8.5E-41 T 14-10-2018 IPR021236 Uncharacterised protein family YfdX Thimo_3559 3a5cde4380fac9ef0842f596f1405695 236 Gene3D G3DSA:1.20.120.1940 139 218 1.1E-14 T 14-10-2018 Thimo_3559 3a5cde4380fac9ef0842f596f1405695 236 Gene3D G3DSA:1.20.120.1940 40 138 4.3E-16 T 14-10-2018 Thimo_2847 54d8df86e9b2d54c898d0c365c129442 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 7.3E-24 T 14-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2847 54d8df86e9b2d54c898d0c365c129442 101 Gene3D G3DSA:4.10.830.10 42 101 4.4E-20 T 14-10-2018 Thimo_2847 54d8df86e9b2d54c898d0c365c129442 101 SUPERFAMILY SSF57716 2 101 7.13E-35 T 14-10-2018 Thimo_2847 54d8df86e9b2d54c898d0c365c129442 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.091 T 14-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid Thimo_0994 5ac473536f3de070e6fc628e789e01ac 308 SUPERFAMILY SSF53756 20 299 1.26E-6 T 14-10-2018 Thimo_0556 be2b5be57778165275063afdce8596fd 416 SUPERFAMILY SSF53098 197 318 4.86E-11 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0556 be2b5be57778165275063afdce8596fd 416 Pfam PF00665 Integrase core domain 207 299 2.4E-7 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_1508 be2b5be57778165275063afdce8596fd 416 SUPERFAMILY SSF53098 197 318 4.86E-11 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1508 be2b5be57778165275063afdce8596fd 416 Pfam PF00665 Integrase core domain 207 299 2.4E-7 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_0061 be2b5be57778165275063afdce8596fd 416 SUPERFAMILY SSF53098 197 318 4.86E-11 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0061 be2b5be57778165275063afdce8596fd 416 Pfam PF00665 Integrase core domain 207 299 2.4E-7 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_0728 84eadd2b7b38e691f8fdb01b63f541c1 171 SUPERFAMILY SSF111384 23 165 1.57E-29 T 14-10-2018 Thimo_0728 84eadd2b7b38e691f8fdb01b63f541c1 171 Gene3D G3DSA:3.30.910.20 23 165 2.3E-35 T 14-10-2018 IPR024930 Skp domain superfamily Thimo_0728 84eadd2b7b38e691f8fdb01b63f541c1 171 Pfam PF03938 Outer membrane protein (OmpH-like) 13 164 2.0E-31 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Thimo_0728 84eadd2b7b38e691f8fdb01b63f541c1 171 PIRSF PIRSF002094 1 167 2.3E-40 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Thimo_0728 84eadd2b7b38e691f8fdb01b63f541c1 171 SMART SM00935 12 165 2.2E-43 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 5.9E-39 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 Gene3D G3DSA:3.40.30.10 1 108 8.7E-36 T 14-10-2018 Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 PIRSF PIRSF000077 2 108 1.7E-44 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 SUPERFAMILY SSF52833 3 108 4.93E-41 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 PRINTS PR00421 Thioredoxin family signature 24 32 8.0E-10 T 14-10-2018 Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 PRINTS PR00421 Thioredoxin family signature 32 41 8.0E-10 T 14-10-2018 Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 PRINTS PR00421 Thioredoxin family signature 72 83 8.0E-10 T 14-10-2018 Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Thimo_2083 1ea007deb0de69001a4c6d0488c36ef7 108 Pfam PF00085 Thioredoxin 5 106 2.5E-34 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 Gene3D G3DSA:1.10.8.60 357 431 6.3E-23 T 14-10-2018 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 Pfam PF02954 Bacterial regulatory protein, Fis family 476 512 5.0E-11 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 SMART SM00382 205 349 2.6E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 271 286 - T 14-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 209 222 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 SUPERFAMILY SSF52540 185 426 2.38E-71 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 Pfam PF00158 Sigma-54 interaction domain 185 352 4.4E-73 T 14-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 397 406 - T 14-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 Gene3D G3DSA:1.10.10.60 453 518 2.3E-11 T 14-10-2018 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 Gene3D G3DSA:3.40.50.2300 43 179 1.0E-11 T 14-10-2018 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 478 495 1.9E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 495 515 1.9E-10 T 14-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 Gene3D G3DSA:3.40.50.300 180 356 9.5E-67 T 14-10-2018 Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 Pfam PF06490 Flagellar regulatory protein FleQ 48 162 8.2E-12 T 14-10-2018 IPR010518 Flagellar regulatory FleQ Thimo_0267 a2feb2779902e667d8ad5568a0b957cb 523 SUPERFAMILY SSF46689 467 515 2.78E-9 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3122 b0e8ef79d5f384fbd888c3f4dd4b921e 250 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 14 245 6.0E-36 T 14-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Thimo_3122 b0e8ef79d5f384fbd888c3f4dd4b921e 250 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 250 46.607 T 14-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Thimo_3122 b0e8ef79d5f384fbd888c3f4dd4b921e 250 Pfam PF02654 Cobalamin-5-phosphate synthase 13 242 4.3E-50 T 14-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Thimo_2468 b40168bda177a89cb6215600456f5466 277 Pfam PF13545 Crp-like helix-turn-helix domain 188 254 9.6E-16 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_2468 b40168bda177a89cb6215600456f5466 277 SMART SM00100 50 171 4.1E-4 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_2468 b40168bda177a89cb6215600456f5466 277 SUPERFAMILY SSF46785 186 260 6.48E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2468 b40168bda177a89cb6215600456f5466 277 Gene3D G3DSA:1.10.10.10 187 255 3.9E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2468 b40168bda177a89cb6215600456f5466 277 Gene3D G3DSA:2.60.120.10 45 186 1.7E-6 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_2468 b40168bda177a89cb6215600456f5466 277 SUPERFAMILY SSF51206 46 176 1.93E-12 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_2468 b40168bda177a89cb6215600456f5466 277 SMART SM00419 200 248 2.1E-6 T 14-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Thimo_2047 f31f18a5e60855e7cc7a8f1d04065dda 115 Pfam PF10636 Hemin uptake protein hemP 79 115 1.7E-15 T 14-10-2018 IPR019600 Hemin uptake protein HemP Thimo_2047 f31f18a5e60855e7cc7a8f1d04065dda 115 Gene3D G3DSA:2.10.70.10 76 115 1.0E-12 T 14-10-2018 Thimo_0586 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 37 145 6.3E-22 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0586 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 Gene3D G3DSA:3.40.50.12280 2 158 5.6E-80 T 14-10-2018 Thimo_0586 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0586 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 151 42.255 T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0586 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 152 1.3E-77 T 14-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0586 4a7ca2c7413daf8b163a2ea0e83f8e5e 158 SUPERFAMILY SSF56770 9 153 4.06E-67 T 14-10-2018 Thimo_0784 888c8be46bbc6a76a352e6dd0dbd75e1 628 Gene3D G3DSA:3.40.50.300 352 557 7.7E-40 T 14-10-2018 Thimo_0784 888c8be46bbc6a76a352e6dd0dbd75e1 628 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 418 542 3.3E-22 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_0784 888c8be46bbc6a76a352e6dd0dbd75e1 628 SUPERFAMILY SSF52540 370 586 6.05E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0784 888c8be46bbc6a76a352e6dd0dbd75e1 628 SMART SM00382 413 545 5.3E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1290 deba0551486976f53b2c7b2c28230175 352 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 42 338 1.0E-106 T 14-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Thimo_1290 deba0551486976f53b2c7b2c28230175 352 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 11 350 39.198 T 14-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Thimo_1290 deba0551486976f53b2c7b2c28230175 352 Pfam PF01008 Initiation factor 2 subunit family 54 338 7.8E-74 T 14-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 Thimo_1290 deba0551486976f53b2c7b2c28230175 352 SUPERFAMILY SSF100950 11 342 3.68E-110 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Thimo_1290 deba0551486976f53b2c7b2c28230175 352 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 14 338 2.2E-133 T 14-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Thimo_1290 deba0551486976f53b2c7b2c28230175 352 Gene3D G3DSA:3.40.50.10470 189 347 1.7E-52 T 14-10-2018 Thimo_1290 deba0551486976f53b2c7b2c28230175 352 Gene3D G3DSA:1.20.120.1840 12 188 6.4E-50 T 14-10-2018 Thimo_2605 60945a765f56a1056ca9dcb4e75ba22e 449 Pfam PF01523 Putative modulator of DNA gyrase 35 326 2.2E-63 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Thimo_2605 60945a765f56a1056ca9dcb4e75ba22e 449 SUPERFAMILY SSF111283 16 449 1.83E-128 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Thimo_2605 60945a765f56a1056ca9dcb4e75ba22e 449 Gene3D G3DSA:3.30.2290.10 2 235 3.8E-95 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Thimo_1804 6b43713843e806f2e8c30a74c7a98324 332 Gene3D G3DSA:2.40.50.140 40 97 1.6E-16 T 14-10-2018 Thimo_1804 6b43713843e806f2e8c30a74c7a98324 332 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 42 332 30.396 T 14-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Thimo_1804 6b43713843e806f2e8c30a74c7a98324 332 Gene3D G3DSA:3.40.50.300 99 270 2.1E-40 T 14-10-2018 Thimo_1804 6b43713843e806f2e8c30a74c7a98324 332 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 76 327 3.5E-60 T 14-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Thimo_1804 6b43713843e806f2e8c30a74c7a98324 332 SUPERFAMILY SSF52540 113 329 3.01E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1804 6b43713843e806f2e8c30a74c7a98324 332 Gene3D G3DSA:1.10.40.50 272 332 3.9E-18 T 14-10-2018 Thimo_1804 6b43713843e806f2e8c30a74c7a98324 332 Pfam PF03193 RsgA GTPase 97 270 1.1E-43 T 14-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 Thimo_1748 fd448166af51b2b691b73621b4e7c0c9 414 Pfam PF09967 VWA-like domain (DUF2201) 289 413 4.6E-26 T 14-10-2018 IPR018698 VWA-like domain Thimo_1748 fd448166af51b2b691b73621b4e7c0c9 414 Pfam PF13203 Putative metallopeptidase domain 6 282 2.9E-46 T 14-10-2018 IPR025154 Putative metallopeptidase domain Thimo_1748 fd448166af51b2b691b73621b4e7c0c9 414 SUPERFAMILY SSF53300 288 393 1.11E-6 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0196 caa9e280d82e1f737c2835ac8b8b8786 160 SUPERFAMILY SSF55961 1 144 6.77E-22 T 14-10-2018 Thimo_0196 caa9e280d82e1f737c2835ac8b8b8786 160 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 138 1.1E-17 T 14-10-2018 IPR019587 Polyketide cyclase/dehydrase Thimo_0196 caa9e280d82e1f737c2835ac8b8b8786 160 Gene3D G3DSA:3.30.530.20 2 148 1.7E-25 T 14-10-2018 IPR023393 START-like domain superfamily Thimo_3055 3b38d5c882abde4e13cbe1b07fa88f9d 351 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 336 1.3E-149 T 14-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Thimo_3055 3b38d5c882abde4e13cbe1b07fa88f9d 351 Gene3D G3DSA:3.90.25.10 201 331 2.6E-132 T 14-10-2018 Thimo_3055 3b38d5c882abde4e13cbe1b07fa88f9d 351 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 324 2.6E-95 T 14-10-2018 IPR016040 NAD(P)-binding domain Thimo_3055 3b38d5c882abde4e13cbe1b07fa88f9d 351 Gene3D G3DSA:3.40.50.720 4 323 2.6E-132 T 14-10-2018 Thimo_3055 3b38d5c882abde4e13cbe1b07fa88f9d 351 SUPERFAMILY SSF51735 1 340 2.74E-95 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3230 08a463576d367ade001861e22a867afe 295 Pfam PF00639 PPIC-type PPIASE domain 157 250 9.9E-22 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Thimo_3230 08a463576d367ade001861e22a867afe 295 SUPERFAMILY SSF109998 27 179 6.67E-22 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily Thimo_3230 08a463576d367ade001861e22a867afe 295 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 192 212 - T 14-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Thimo_3230 08a463576d367ade001861e22a867afe 295 TIGRFAM TIGR02933 nifM_nitrog: nitrogen fixation protein NifM 20 288 1.1E-61 T 14-10-2018 IPR014282 Nitrogen fixation protein NifM Thimo_3230 08a463576d367ade001861e22a867afe 295 Gene3D G3DSA:3.10.50.40 151 254 2.0E-41 T 14-10-2018 Thimo_3230 08a463576d367ade001861e22a867afe 295 Gene3D G3DSA:1.10.4030.30 32 258 2.0E-41 T 14-10-2018 Thimo_3230 08a463576d367ade001861e22a867afe 295 SUPERFAMILY SSF54534 145 250 7.2E-24 T 14-10-2018 Thimo_1157 5755055f21ae73c256b16c99bde92ee5 222 SUPERFAMILY SSF140931 109 181 4.05E-6 T 14-10-2018 IPR036597 Fido-like domain superfamily Thimo_1157 5755055f21ae73c256b16c99bde92ee5 222 Gene3D G3DSA:1.10.3290.10 11 208 7.0E-8 T 14-10-2018 IPR036597 Fido-like domain superfamily Thimo_2012 1aef0c07a8afa921c70eb5b9eb035e39 419 Pfam PF05161 MOFRL family 307 411 6.2E-34 T 14-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 Thimo_2012 1aef0c07a8afa921c70eb5b9eb035e39 419 Pfam PF13660 Domain of unknown function (DUF4147) 19 218 3.1E-44 T 14-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 Thimo_2012 1aef0c07a8afa921c70eb5b9eb035e39 419 Gene3D G3DSA:3.40.50.10180 48 257 3.3E-100 T 14-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 Thimo_2012 1aef0c07a8afa921c70eb5b9eb035e39 419 Gene3D G3DSA:3.40.1480.10 258 412 3.3E-100 T 14-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily Thimo_2012 1aef0c07a8afa921c70eb5b9eb035e39 419 SUPERFAMILY SSF82544 12 416 1.01E-96 T 14-10-2018 Thimo_2639 c93ba0297a07dbb6e5979490cfdc744e 108 SMART SM00450 6 101 2.8E-23 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_2639 c93ba0297a07dbb6e5979490cfdc744e 108 Gene3D G3DSA:3.40.250.10 2 102 6.2E-28 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_2639 c93ba0297a07dbb6e5979490cfdc744e 108 Pfam PF00581 Rhodanese-like domain 10 97 4.4E-13 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_2639 c93ba0297a07dbb6e5979490cfdc744e 108 SUPERFAMILY SSF52821 3 102 7.2E-31 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_2028 ea37494f991e813a25138f671529abe6 303 Pfam PF00665 Integrase core domain 128 244 1.0E-28 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_2028 ea37494f991e813a25138f671529abe6 303 Gene3D G3DSA:3.30.420.10 123 276 6.9E-13 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2028 ea37494f991e813a25138f671529abe6 303 SUPERFAMILY SSF53098 122 286 1.47E-37 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2028 ea37494f991e813a25138f671529abe6 303 Pfam PF13276 HTH-like domain 47 103 8.3E-15 T 14-10-2018 IPR025948 HTH-like domain Thimo_0721 58d3d1794819a434527d16a9d0fa6a6b 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 236 2.5E-97 T 14-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Thimo_0721 58d3d1794819a434527d16a9d0fa6a6b 240 Pfam PF00696 Amino acid kinase family 8 216 3.3E-27 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Thimo_0721 58d3d1794819a434527d16a9d0fa6a6b 240 PIRSF PIRSF005650 2 240 1.3E-91 T 14-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 Thimo_0721 58d3d1794819a434527d16a9d0fa6a6b 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 44.894 T 14-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Thimo_0721 58d3d1794819a434527d16a9d0fa6a6b 240 Gene3D G3DSA:3.40.1160.10 2 239 6.4E-76 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_0721 58d3d1794819a434527d16a9d0fa6a6b 240 SUPERFAMILY SSF53633 6 236 6.68E-71 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Thimo_0126 36029fbd30ffdab9c34793c765a0d8e3 527 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 68 227 9.6E-20 T 14-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like Thimo_0693 e63fd2e90b693dd5ed9d95183dc493cd 164 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 27 9.6E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0693 e63fd2e90b693dd5ed9d95183dc493cd 164 Gene3D G3DSA:3.30.700.10 9 164 5.2E-27 T 14-10-2018 Thimo_0693 e63fd2e90b693dd5ed9d95183dc493cd 164 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 1.3E-9 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0693 e63fd2e90b693dd5ed9d95183dc493cd 164 Pfam PF00114 Pilin (bacterial filament) 37 161 1.8E-8 T 14-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 Thimo_0693 e63fd2e90b693dd5ed9d95183dc493cd 164 SUPERFAMILY SSF54523 8 161 4.32E-19 T 14-10-2018 Thimo_1640 23b2e32a33af6d65e59ff083e6dfc540 357 SUPERFAMILY SSF53474 66 354 9.63E-36 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1640 23b2e32a33af6d65e59ff083e6dfc540 357 TIGRFAM TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit 7 356 1.3E-177 T 14-10-2018 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit GO:0016746|GO:0042619 Thimo_1640 23b2e32a33af6d65e59ff083e6dfc540 357 Pfam PF00561 alpha/beta hydrolase fold 70 335 8.8E-37 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3377 c90856dbe4600243a3fe098608269857 146 Gene3D G3DSA:3.30.420.270 61 131 1.8E-6 T 14-10-2018 Thimo_3377 c90856dbe4600243a3fe098608269857 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 7 135 2.2E-27 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Thimo_3407 c69e62a7affaef79e6601a5854fd47e4 352 Gene3D G3DSA:1.10.1610.10 26 348 1.1E-124 T 14-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Thimo_3407 c69e62a7affaef79e6601a5854fd47e4 352 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 14 350 36.736 T 14-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Thimo_3407 c69e62a7affaef79e6601a5854fd47e4 352 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 16 348 1.8E-129 T 14-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Thimo_3407 c69e62a7affaef79e6601a5854fd47e4 352 SUPERFAMILY SSF52733 7 349 3.66E-115 T 14-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Thimo_3407 c69e62a7affaef79e6601a5854fd47e4 352 Pfam PF02277 Phosphoribosyltransferase 14 348 4.2E-127 T 14-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Thimo_3407 c69e62a7affaef79e6601a5854fd47e4 352 Gene3D G3DSA:3.40.50.10210 58 331 1.1E-124 T 14-10-2018 Thimo_1896 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 Gene3D G3DSA:3.30.750.80 79 182 2.5E-32 T 14-10-2018 Thimo_1896 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 SUPERFAMILY SSF53335 84 391 5.37E-73 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1896 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 Gene3D G3DSA:3.40.50.150 183 395 1.5E-67 T 14-10-2018 Thimo_1896 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 Gene3D G3DSA:2.30.130.10 4 75 1.1E-17 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 Thimo_1896 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 169 357 1.9E-15 T 14-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Thimo_1896 1a0ac6091eaf6c5cc57ed28f983e0bd4 397 SUPERFAMILY SSF88697 6 74 7.46E-11 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_0623 613b1e2b278fce10c74d69ce51482bd8 408 Gene3D G3DSA:3.20.20.450 145 400 1.7E-78 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0623 613b1e2b278fce10c74d69ce51482bd8 408 SUPERFAMILY SSF141868 148 395 3.01E-75 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0623 613b1e2b278fce10c74d69ce51482bd8 408 Pfam PF00072 Response regulator receiver domain 11 127 9.5E-18 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0623 613b1e2b278fce10c74d69ce51482bd8 408 SMART SM00448 8 127 2.5E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0623 613b1e2b278fce10c74d69ce51482bd8 408 SUPERFAMILY SSF52172 11 136 1.99E-24 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0623 613b1e2b278fce10c74d69ce51482bd8 408 Gene3D G3DSA:3.40.50.2300 10 136 1.2E-25 T 14-10-2018 Thimo_0623 613b1e2b278fce10c74d69ce51482bd8 408 SMART SM00052 142 387 4.1E-75 T 14-10-2018 IPR001633 EAL domain Thimo_0623 613b1e2b278fce10c74d69ce51482bd8 408 Pfam PF00563 EAL domain 149 382 5.8E-61 T 14-10-2018 IPR001633 EAL domain Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 SUPERFAMILY SSF54570 3 84 6.28E-35 T 14-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 PIRSF PIRSF002144 1 92 4.2E-32 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.9E-22 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.9E-22 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.9E-22 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 Pfam PF00203 Ribosomal protein S19 3 83 6.2E-36 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.86 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 Gene3D G3DSA:3.30.860.10 1 92 2.5E-40 T 14-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 1.2E-43 T 14-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 Thimo_2856 31ce661e7a95a0451adae7802a030d42 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 14-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_3252 7c7918f7e0bca1c439c00bca3288351a 115 SUPERFAMILY SSF54292 19 114 3.61E-12 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Thimo_3252 7c7918f7e0bca1c439c00bca3288351a 115 Gene3D G3DSA:3.10.20.30 1 115 2.6E-30 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_3252 7c7918f7e0bca1c439c00bca3288351a 115 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 106 7.6E-11 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Thimo_1973 be3de4c82300721ea7b64fdef71855bc 166 Pfam PF02600 Disulfide bond formation protein DsbB 7 158 9.8E-31 T 14-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 Thimo_1973 be3de4c82300721ea7b64fdef71855bc 166 Gene3D G3DSA:1.20.1550.10 2 165 8.5E-34 T 14-10-2018 IPR023380 DsbB-like superfamily Thimo_1973 be3de4c82300721ea7b64fdef71855bc 166 SUPERFAMILY SSF158442 10 158 4.32E-28 T 14-10-2018 IPR023380 DsbB-like superfamily Thimo_3384 0feb12cbf41a970a7c6af5ddadc64dd1 433 Pfam PF02530 Porin subfamily 86 252 4.4E-6 T 14-10-2018 IPR003684 Porin, alpha proteobacteria type GO:0015288|GO:0016020|GO:0055085 Thimo_3366 c7beed5ebe5adf154730ee746a190b04 194 SUPERFAMILY SSF54631 40 189 6.35E-28 T 14-10-2018 Thimo_3366 c7beed5ebe5adf154730ee746a190b04 194 SMART SM00116 141 189 0.17 T 14-10-2018 IPR000644 CBS domain Thimo_3366 c7beed5ebe5adf154730ee746a190b04 194 SMART SM00116 59 107 2.2E-9 T 14-10-2018 IPR000644 CBS domain Thimo_3366 c7beed5ebe5adf154730ee746a190b04 194 Gene3D G3DSA:3.10.580.10 34 190 7.9E-28 T 14-10-2018 Thimo_3366 c7beed5ebe5adf154730ee746a190b04 194 Pfam PF00571 CBS domain 52 106 1.7E-12 T 14-10-2018 IPR000644 CBS domain Thimo_3366 c7beed5ebe5adf154730ee746a190b04 194 Pfam PF00571 CBS domain 134 187 1.6E-6 T 14-10-2018 IPR000644 CBS domain Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 Gene3D G3DSA:3.30.460.30 1 156 1.1E-54 T 14-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 5.2E-47 T 14-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 SUPERFAMILY SSF69075 315 416 8.5E-26 T 14-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 14-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 414 6.4E-135 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 31.102 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 5.7E-48 T 14-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 Gene3D G3DSA:3.40.50.720 160 310 6.4E-43 T 14-10-2018 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 415 6.8E-24 T 14-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 SUPERFAMILY SSF69742 1 156 6.28E-48 T 14-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 SUPERFAMILY SSF51735 161 313 2.16E-36 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3131 e1b1601ffb39fa6d692f13dae7fb79f9 423 PIRSF PIRSF000445 1 423 3.9E-157 T 14-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Thimo_2310 eb068a2125c896c8c871ad27c5ddab13 358 Gene3D G3DSA:3.30.460.10 142 189 5.3E-8 T 14-10-2018 Thimo_2310 eb068a2125c896c8c871ad27c5ddab13 358 Gene3D G3DSA:3.30.460.10 8 140 3.8E-6 T 14-10-2018 Thimo_2310 eb068a2125c896c8c871ad27c5ddab13 358 SMART SM00954 65 208 6.5E-11 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 Thimo_2310 eb068a2125c896c8c871ad27c5ddab13 358 Pfam PF04607 Region found in RelA / SpoT proteins 65 206 3.0E-17 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 Thimo_2310 eb068a2125c896c8c871ad27c5ddab13 358 SUPERFAMILY SSF81301 59 238 6.38E-27 T 14-10-2018 Thimo_2366 383d6d7c5647e477f34da9587810792b 192 Pfam PF00857 Isochorismatase family 16 169 6.9E-25 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 Thimo_2366 383d6d7c5647e477f34da9587810792b 192 SUPERFAMILY SSF52499 16 192 5.89E-41 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Thimo_2366 383d6d7c5647e477f34da9587810792b 192 Gene3D G3DSA:3.40.50.850 8 192 1.3E-46 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Thimo_2654 28e828ed1822161e513b819657d38b2a 361 Gene3D G3DSA:3.40.718.10 1 357 2.3E-150 T 14-10-2018 Thimo_2654 28e828ed1822161e513b819657d38b2a 361 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 353 2.1E-137 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Thimo_2654 28e828ed1822161e513b819657d38b2a 361 SMART SM01329 4 353 2.2E-210 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Thimo_2654 28e828ed1822161e513b819657d38b2a 361 SUPERFAMILY SSF53659 3 357 6.53E-124 T 14-10-2018 Thimo_2654 28e828ed1822161e513b819657d38b2a 361 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 5.2E-157 T 14-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Thimo_2654 28e828ed1822161e513b819657d38b2a 361 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Thimo_2654 28e828ed1822161e513b819657d38b2a 361 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 52.807 T 14-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Thimo_2177 03fd991a5d040d6048c4dfdcbe229268 187 Pfam PF00578 AhpC/TSA family 13 125 2.7E-12 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Thimo_2177 03fd991a5d040d6048c4dfdcbe229268 187 SUPERFAMILY SSF52833 6 184 4.21E-44 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2177 03fd991a5d040d6048c4dfdcbe229268 187 Gene3D G3DSA:3.40.30.10 9 186 9.5E-41 T 14-10-2018 Thimo_1451 cd8530104894ad5aba66f02a7137b950 597 SMART SM00729 208 425 8.4E-21 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_1451 cd8530104894ad5aba66f02a7137b950 597 Pfam PF04055 Radical SAM superfamily 214 374 2.3E-11 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_1451 cd8530104894ad5aba66f02a7137b950 597 SUPERFAMILY SSF102114 210 418 2.09E-29 T 14-10-2018 Thimo_1451 cd8530104894ad5aba66f02a7137b950 597 Gene3D G3DSA:3.80.30.20 210 410 2.7E-15 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 SMART SM01004 11 335 4.2E-244 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 14 334 6.3E-141 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 Gene3D G3DSA:3.20.20.70 3 337 4.6E-145 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 279 294 1.2E-57 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 162 181 1.2E-57 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 200 219 1.2E-57 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 131 145 1.2E-57 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 309 328 1.2E-57 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 254 270 1.2E-57 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 PIRSF PIRSF001415 5 337 6.0E-149 T 14-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 SUPERFAMILY SSF51569 12 336 1.47E-143 T 14-10-2018 Thimo_0133 91e01664243667c246b5dc676d9bb2ed 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 254 266 - T 14-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 Gene3D G3DSA:1.10.760.10 240 302 1.4E-7 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 SUPERFAMILY SSF46626 40 143 5.83E-29 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 Pfam PF00034 Cytochrome c 44 140 4.5E-7 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 Gene3D G3DSA:1.10.760.10 24 139 1.0E-34 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 PRINTS PR00604 Class IA and IB cytochrome C signature 52 59 1.2E-11 T 14-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 PRINTS PR00604 Class IA and IB cytochrome C signature 81 91 1.2E-11 T 14-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 PRINTS PR00604 Class IA and IB cytochrome C signature 131 139 1.2E-11 T 14-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 PRINTS PR00604 Class IA and IB cytochrome C signature 65 80 1.2E-11 T 14-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 PRINTS PR00604 Class IA and IB cytochrome C signature 95 111 1.2E-11 T 14-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2976 9c7e4a1be8d0911a323f39621c479f19 305 PRINTS PR00604 Class IA and IB cytochrome C signature 114 124 1.2E-11 T 14-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_3000 5c3a2a689b30edfe5c4e8facc53d4e42 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 1.0E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3000 5c3a2a689b30edfe5c4e8facc53d4e42 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 1.0E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3000 5c3a2a689b30edfe5c4e8facc53d4e42 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.6E-10 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3000 5c3a2a689b30edfe5c4e8facc53d4e42 47 SUPERFAMILY SSF56918 4 47 4.19E-13 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_3000 5c3a2a689b30edfe5c4e8facc53d4e42 47 PIRSF PIRSF002900 1 47 4.6E-14 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3000 5c3a2a689b30edfe5c4e8facc53d4e42 47 Gene3D G3DSA:1.20.5.250 1 47 1.6E-19 T 14-10-2018 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 SUPERFAMILY SSF53067 153 341 4.99E-48 T 14-10-2018 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 Gene3D G3DSA:3.30.420.40 14 331 1.8E-126 T 14-10-2018 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 Pfam PF06723 MreB/Mbl protein 11 337 4.7E-144 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 1.7E-157 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 Gene3D G3DSA:3.30.420.40 158 321 1.8E-126 T 14-10-2018 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 2.0E-63 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 2.0E-63 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 2.0E-63 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 2.0E-63 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 2.0E-63 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 Gene3D G3DSA:3.90.640.10 190 263 1.8E-126 T 14-10-2018 Thimo_2784 af82018835e60d0f3afcd3c99c8e5cd7 347 SUPERFAMILY SSF53067 9 152 7.92E-38 T 14-10-2018 Thimo_2435 85fd24ec2a8856c4fb7025452db24c8b 261 Gene3D G3DSA:3.40.50.1820 16 260 1.3E-67 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2435 85fd24ec2a8856c4fb7025452db24c8b 261 Pfam PF01738 Dienelactone hydrolase family 38 258 1.0E-45 T 14-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 Thimo_2435 85fd24ec2a8856c4fb7025452db24c8b 261 SUPERFAMILY SSF53474 25 258 6.89E-47 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1447 e08b1894504e81b460cc46540ca53ad3 237 Gene3D G3DSA:3.20.20.370 9 222 2.7E-12 T 14-10-2018 Thimo_1447 e08b1894504e81b460cc46540ca53ad3 237 SUPERFAMILY SSF88713 22 151 4.7E-13 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Thimo_1447 e08b1894504e81b460cc46540ca53ad3 237 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 8 149 2.1E-7 T 14-10-2018 IPR018763 Protein of unknown function DUF2334 Thimo_1538 bd92fa96d6b101bcad1fe17baa524632 566 Pfam PF00069 Protein kinase domain 65 264 9.7E-33 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_1538 bd92fa96d6b101bcad1fe17baa524632 566 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 71 95 - T 14-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 Thimo_1538 bd92fa96d6b101bcad1fe17baa524632 566 Gene3D G3DSA:3.30.200.20 8 140 5.3E-56 T 14-10-2018 Thimo_1538 bd92fa96d6b101bcad1fe17baa524632 566 SUPERFAMILY SSF56112 57 314 3.51E-55 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_1538 bd92fa96d6b101bcad1fe17baa524632 566 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 180 192 - T 14-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Thimo_1538 bd92fa96d6b101bcad1fe17baa524632 566 Gene3D G3DSA:1.10.510.10 141 312 5.3E-56 T 14-10-2018 Thimo_1538 bd92fa96d6b101bcad1fe17baa524632 566 SMART SM00220 65 314 1.2E-32 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_2920 9d8cd4d29a22f191c94d6c028eb9cdca 315 SUPERFAMILY SSF53850 21 301 7.39E-29 T 14-10-2018 Thimo_2920 9d8cd4d29a22f191c94d6c028eb9cdca 315 SMART SM00062 64 303 6.3E-10 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_2920 9d8cd4d29a22f191c94d6c028eb9cdca 315 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 125 300 7.4E-16 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Thimo_2920 9d8cd4d29a22f191c94d6c028eb9cdca 315 Gene3D G3DSA:3.40.190.10 71 300 1.4E-27 T 14-10-2018 Thimo_2920 9d8cd4d29a22f191c94d6c028eb9cdca 315 Gene3D G3DSA:3.40.190.10 151 262 1.4E-27 T 14-10-2018 Thimo_0320 4a658931272bf350a972f54a42552c5b 105 Pfam PF09623 CRISPR-associated protein NE0113 (Cas_NE0113) 26 77 8.8E-6 T 14-10-2018 IPR019092 CRISPR-assoc protein, NE0113/Csx13 Thimo_2431 2277b6c22193735b86ea96d3a6cf9c47 181 Pfam PF13563 2'-5' RNA ligase superfamily 28 151 4.2E-12 T 14-10-2018 Thimo_2431 2277b6c22193735b86ea96d3a6cf9c47 181 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 3 171 18.295 T 14-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Thimo_2431 2277b6c22193735b86ea96d3a6cf9c47 181 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 4 171 1.5E-25 T 14-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Thimo_2431 2277b6c22193735b86ea96d3a6cf9c47 181 Gene3D G3DSA:3.90.1140.10 2 172 4.8E-40 T 14-10-2018 Thimo_2431 2277b6c22193735b86ea96d3a6cf9c47 181 SUPERFAMILY SSF55144 4 172 5.58E-36 T 14-10-2018 IPR009097 Cyclic phosphodiesterase Thimo_0673 a654247c7dec4d096f02f2449c933c24 235 Gene3D G3DSA:3.40.50.880 1 233 1.2E-58 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0673 a654247c7dec4d096f02f2449c933c24 235 SUPERFAMILY SSF52317 5 202 5.3E-45 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0673 a654247c7dec4d096f02f2449c933c24 235 Pfam PF00117 Glutamine amidotransferase class-I 43 190 3.3E-14 T 14-10-2018 IPR017926 Glutamine amidotransferase Thimo_2171 822d9722f6f037b2db6bd42acb8299e2 160 SUPERFAMILY SSF51206 9 137 6.02E-20 T 14-10-2018 IPR018490 Cyclic nucleotide-binding-like Thimo_2171 822d9722f6f037b2db6bd42acb8299e2 160 Pfam PF00027 Cyclic nucleotide-binding domain 36 120 6.8E-14 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_2171 822d9722f6f037b2db6bd42acb8299e2 160 Gene3D G3DSA:2.60.120.10 5 149 5.7E-22 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_2171 822d9722f6f037b2db6bd42acb8299e2 160 SMART SM00100 15 132 0.0011 T 14-10-2018 IPR000595 Cyclic nucleotide-binding domain Thimo_3590 45b201d393c3b8bb89e1173f8980331b 313 SUPERFAMILY SSF53795 112 182 3.36E-9 T 14-10-2018 Thimo_0808 6a14847e9917749a6904207749e14052 157 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 4.1E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0808 6a14847e9917749a6904207749e14052 157 Gene3D G3DSA:3.30.700.10 8 153 3.8E-7 T 14-10-2018 Thimo_0808 6a14847e9917749a6904207749e14052 157 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0808 6a14847e9917749a6904207749e14052 157 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 26 2.1E-6 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0808 6a14847e9917749a6904207749e14052 157 SUPERFAMILY SSF54523 8 66 3.37E-10 T 14-10-2018 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 Pfam PF00460 Flagella basal body rod protein 10 39 1.6E-5 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 161 185 2.5E-16 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 368 390 2.5E-16 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 54 76 2.5E-16 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 417 434 2.5E-16 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 16 39 2.5E-16 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 PRINTS PR01005 Flagellar hook-associated protein signature 128 148 2.5E-16 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 596 647 1.2E-9 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 SUPERFAMILY SSF64518 168 428 6.67E-20 T 14-10-2018 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 SUPERFAMILY SSF64518 480 647 4.18E-19 T 14-10-2018 Thimo_3493 655af871a6f8933b539d7c172eff64fc 651 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 8 334 2.5E-82 T 14-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 14-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 SUPERFAMILY SSF53067 1 314 2.91E-44 T 14-10-2018 Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 4.9E-132 T 14-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 Pfam PF00814 Glycoprotease family 24 311 4.0E-99 T 14-10-2018 IPR000905 Gcp-like domain Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 Gene3D G3DSA:3.30.420.40 129 297 2.9E-129 T 14-10-2018 Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.4E-50 T 14-10-2018 IPR017861 Kae1/TsaD family Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 1.4E-50 T 14-10-2018 IPR017861 Kae1/TsaD family Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.4E-50 T 14-10-2018 IPR017861 Kae1/TsaD family Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.4E-50 T 14-10-2018 IPR017861 Kae1/TsaD family Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.4E-50 T 14-10-2018 IPR017861 Kae1/TsaD family Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.4E-50 T 14-10-2018 IPR017861 Kae1/TsaD family Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 Gene3D G3DSA:3.30.420.40 3 319 2.9E-129 T 14-10-2018 Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 335 62.622 T 14-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Thimo_0557 4386cce7dc5498f56fb26e2c67c877d6 341 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 8.4E-119 T 14-10-2018 IPR017861 Kae1/TsaD family Thimo_1871 da981ed754561d5d755a1ff882dfe6b5 459 Gene3D G3DSA:1.25.40.10 328 422 1.8E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1871 da981ed754561d5d755a1ff882dfe6b5 459 SUPERFAMILY SSF48452 201 396 3.25E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1871 da981ed754561d5d755a1ff882dfe6b5 459 Gene3D G3DSA:1.25.40.10 171 327 1.3E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2519 150a0a8d9e146c9122df889596634af4 409 Pfam PF02687 FtsX-like permease family 298 402 2.7E-6 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_2102 6585b615c5323b0b019405c740330377 258 PIRSF PIRSF006648 2 255 3.3E-24 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Thimo_2102 6585b615c5323b0b019405c740330377 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 60 82 6.1E-7 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Thimo_2102 6585b615c5323b0b019405c740330377 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 178 197 6.1E-7 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Thimo_2102 6585b615c5323b0b019405c740330377 258 PRINTS PR00164 ABC-2 type transport system membrane protein signature 198 217 6.1E-7 T 14-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Thimo_2102 6585b615c5323b0b019405c740330377 258 Pfam PF01061 ABC-2 type transporter 13 220 1.1E-35 T 14-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 Gene3D G3DSA:2.40.50.100 21 85 1.8E-28 T 14-10-2018 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.541 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.2E-38 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.2E-38 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.2E-38 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 2.0E-14 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 14-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 3.7E-40 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 Pfam PF01016 Ribosomal L27 protein 2 82 2.7E-37 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1315 c4fd691b709b420f5f2941240c2129c3 85 SUPERFAMILY SSF110324 2 80 9.42E-33 T 14-10-2018 Thimo_2596 80d91a9316b7fdc9e9b9ff36691c3da2 461 SUPERFAMILY SSF52266 7 394 3.24E-11 T 14-10-2018 Thimo_2596 80d91a9316b7fdc9e9b9ff36691c3da2 461 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 12 387 5.3E-7 T 14-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 Thimo_1456 eb25d6c9116e7dbb8b41f52dfd6d897e 166 SUPERFAMILY SSF55083 1 153 2.75E-51 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_1456 eb25d6c9116e7dbb8b41f52dfd6d897e 166 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 130 2.1E-33 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_1456 eb25d6c9116e7dbb8b41f52dfd6d897e 166 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 130 1.7E-42 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_1456 eb25d6c9116e7dbb8b41f52dfd6d897e 166 Gene3D G3DSA:3.30.70.560 1 156 8.5E-52 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Thimo_3487 c9f923c48a4358348d76b2db00b5b0be 366 Gene3D G3DSA:3.90.550.10 12 258 6.0E-29 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3487 c9f923c48a4358348d76b2db00b5b0be 366 SUPERFAMILY SSF53448 14 271 1.13E-22 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3487 c9f923c48a4358348d76b2db00b5b0be 366 Pfam PF04138 GtrA-like protein 249 362 2.2E-6 T 14-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 Thimo_3487 c9f923c48a4358348d76b2db00b5b0be 366 Pfam PF00535 Glycosyl transferase family 2 24 155 9.8E-13 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Thimo_2235 7661c49a43b1b661e7e6f9d33f07e469 203 PIRSF PIRSF000005 6 203 9.9E-34 T 14-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Thimo_2235 7661c49a43b1b661e7e6f9d33f07e469 203 SUPERFAMILY SSF46626 38 154 5.1E-17 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2235 7661c49a43b1b661e7e6f9d33f07e469 203 Gene3D G3DSA:1.10.760.10 32 106 3.7E-19 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2235 7661c49a43b1b661e7e6f9d33f07e469 203 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 36 102 7.9E-5 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2235 7661c49a43b1b661e7e6f9d33f07e469 203 Gene3D G3DSA:1.10.760.10 109 203 8.2E-19 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0975 d2c8f6d252ee04ee65a7fc786781d355 217 Gene3D G3DSA:1.10.10.10 83 180 1.3E-34 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0975 d2c8f6d252ee04ee65a7fc786781d355 217 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 6 177 4.9E-39 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Thimo_0975 d2c8f6d252ee04ee65a7fc786781d355 217 SUPERFAMILY SSF46785 2 83 1.63E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0975 d2c8f6d252ee04ee65a7fc786781d355 217 SUPERFAMILY SSF46785 84 160 1.97E-24 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0975 d2c8f6d252ee04ee65a7fc786781d355 217 Pfam PF04079 Segregation and condensation complex subunit ScpB 9 169 5.0E-54 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Thimo_0975 d2c8f6d252ee04ee65a7fc786781d355 217 Gene3D G3DSA:1.10.10.10 2 82 9.9E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0975 d2c8f6d252ee04ee65a7fc786781d355 217 PIRSF PIRSF019345 1 202 8.2E-67 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Thimo_1631 9a0da619d86af7fa3d681cd3330c49dd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 2.9E-12 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1631 9a0da619d86af7fa3d681cd3330c49dd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 65 80 2.9E-12 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1631 9a0da619d86af7fa3d681cd3330c49dd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 2.9E-12 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1631 9a0da619d86af7fa3d681cd3330c49dd 290 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 2.9E-12 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1631 9a0da619d86af7fa3d681cd3330c49dd 290 SUPERFAMILY SSF53474 17 285 1.45E-56 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1631 9a0da619d86af7fa3d681cd3330c49dd 290 Gene3D G3DSA:3.40.50.1820 17 286 2.0E-56 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1631 9a0da619d86af7fa3d681cd3330c49dd 290 Pfam PF00561 alpha/beta hydrolase fold 41 274 6.7E-24 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0356 540b2e4a8447f1e8d600040d8dd0d9a0 377 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 361 1.9E-93 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Thimo_0356 540b2e4a8447f1e8d600040d8dd0d9a0 377 PIRSF PIRSF000267 3 377 5.2E-102 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Thimo_0356 540b2e4a8447f1e8d600040d8dd0d9a0 377 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 4 375 1.5E-117 T 14-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Thimo_2218 aee05546a27514151ef1eca93679ece9 393 SUPERFAMILY SSF53383 11 375 1.75E-104 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_2218 aee05546a27514151ef1eca93679ece9 393 Gene3D G3DSA:3.90.1150.10 12 367 4.6E-140 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_2218 aee05546a27514151ef1eca93679ece9 393 Pfam PF00266 Aminotransferase class-V 29 353 1.1E-35 T 14-10-2018 IPR000192 Aminotransferase class V domain Thimo_2218 aee05546a27514151ef1eca93679ece9 393 Gene3D G3DSA:3.40.640.10 22 270 4.6E-140 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_2218 aee05546a27514151ef1eca93679ece9 393 PIRSF PIRSF000524 5 391 4.9E-115 T 14-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 Thimo_2218 aee05546a27514151ef1eca93679ece9 393 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 209 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Thimo_0347 f48abeb2d6324dc365ebb5dae47b45ee 265 Gene3D G3DSA:3.60.21.10 1 232 1.0E-28 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Thimo_0347 f48abeb2d6324dc365ebb5dae47b45ee 265 Pfam PF00149 Calcineurin-like phosphoesterase 2 195 1.6E-15 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Thimo_0347 f48abeb2d6324dc365ebb5dae47b45ee 265 SUPERFAMILY SSF56300 2 246 2.49E-44 T 14-10-2018 Thimo_2421 c78c5ef9b068fa8bf2f2c4d8a75b1985 304 Pfam PF01522 Polysaccharide deacetylase 76 173 2.1E-12 T 14-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Thimo_2421 c78c5ef9b068fa8bf2f2c4d8a75b1985 304 Gene3D G3DSA:3.20.20.370 1 302 1.6E-95 T 14-10-2018 Thimo_2421 c78c5ef9b068fa8bf2f2c4d8a75b1985 304 SUPERFAMILY SSF88713 5 299 6.18E-82 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Thimo_3761 1107135c604f4dcfd7feea2eb6624e9e 358 Gene3D G3DSA:3.40.50.300 157 352 9.8E-56 T 14-10-2018 Thimo_3761 1107135c604f4dcfd7feea2eb6624e9e 358 Pfam PF00437 Type II/IV secretion system protein 16 337 2.8E-65 T 14-10-2018 IPR001482 Type II/IV secretion system protein Thimo_3761 1107135c604f4dcfd7feea2eb6624e9e 358 SUPERFAMILY SSF52540 15 338 3.62E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3761 1107135c604f4dcfd7feea2eb6624e9e 358 Gene3D G3DSA:3.30.450.90 11 115 5.7E-30 T 14-10-2018 Thimo_3761 1107135c604f4dcfd7feea2eb6624e9e 358 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 22 344 3.5E-99 T 14-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 Thimo_0533 831a4c4a381a607009c9318d6a86db80 228 SUPERFAMILY SSF56784 1 213 6.4E-58 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_0533 831a4c4a381a607009c9318d6a86db80 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 122 181 1.5E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_0533 831a4c4a381a607009c9318d6a86db80 228 Gene3D G3DSA:1.10.150.240 18 84 1.7E-52 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Thimo_0533 831a4c4a381a607009c9318d6a86db80 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 102 178 5.9E-10 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Thimo_0533 831a4c4a381a607009c9318d6a86db80 228 Gene3D G3DSA:3.40.50.1000 6 205 1.7E-52 T 14-10-2018 IPR023214 HAD superfamily Thimo_0533 831a4c4a381a607009c9318d6a86db80 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 184 6.0E-31 T 14-10-2018 Thimo_0982 fcf5ca02901ee37487e454777837147f 148 Pfam PF01943 Polysaccharide biosynthesis protein 41 110 1.2E-11 T 14-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Thimo_0701 91db0b53c328264b3f21b34178ff6401 152 SUPERFAMILY SSF74942 85 152 3.4E-17 T 14-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily Thimo_0701 91db0b53c328264b3f21b34178ff6401 152 Gene3D G3DSA:3.30.300.70 1 81 1.1E-23 T 14-10-2018 IPR035956 RimP, N-terminal domain superfamily Thimo_0701 91db0b53c328264b3f21b34178ff6401 152 Pfam PF02576 RimP N-terminal domain 12 84 4.7E-27 T 14-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal Thimo_0701 91db0b53c328264b3f21b34178ff6401 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 152 26.395 T 14-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 Thimo_0701 91db0b53c328264b3f21b34178ff6401 152 Pfam PF17384 RimP C-terminal SH3 domain 87 152 4.2E-19 T 14-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal Thimo_0701 91db0b53c328264b3f21b34178ff6401 152 SUPERFAMILY SSF75420 4 84 1.28E-23 T 14-10-2018 IPR035956 RimP, N-terminal domain superfamily Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 Gene3D G3DSA:3.40.50.620 4 233 7.2E-75 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 18 27 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 Gene3D G3DSA:1.10.240.10 266 371 2.1E-38 T 14-10-2018 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 Pfam PF00579 tRNA synthetases class I (W and Y) 8 186 4.1E-51 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 Pfam PF00579 tRNA synthetases class I (W and Y) 250 355 9.1E-9 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 SUPERFAMILY SSF52374 11 403 1.84E-85 T 14-10-2018 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 9 183 1.1E-58 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 73 92 7.4E-20 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 151 172 7.4E-20 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 22 38 7.4E-20 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Thimo_0973 d90d0b575861fc108581fc9249cdedbd 406 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 9 404 34.804 T 14-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 Thimo_0441 79bb1bbf34d8bd126568382f1e8a6b9d 243 Pfam PF13650 Aspartyl protease 142 223 5.0E-13 T 14-10-2018 Thimo_0441 79bb1bbf34d8bd126568382f1e8a6b9d 243 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 145 156 - T 14-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 Thimo_0441 79bb1bbf34d8bd126568382f1e8a6b9d 243 Gene3D G3DSA:2.40.70.10 108 240 5.6E-21 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily Thimo_0441 79bb1bbf34d8bd126568382f1e8a6b9d 243 SUPERFAMILY SSF50630 143 232 6.1E-9 T 14-10-2018 IPR021109 Aspartic peptidase domain superfamily Thimo_1268 9b886b5d0555fde8754ff0cf9741163f 222 SMART SM00900 106 198 3.1E-37 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Thimo_1268 9b886b5d0555fde8754ff0cf9741163f 222 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 20 199 6.9E-56 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_1268 9b886b5d0555fde8754ff0cf9741163f 222 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 12 200 25.717 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_1268 9b886b5d0555fde8754ff0cf9741163f 222 PIRSF PIRSF006091 9 210 1.3E-66 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_1268 9b886b5d0555fde8754ff0cf9741163f 222 Pfam PF04205 FMN-binding domain 106 195 1.8E-20 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Thimo_0928 1e981c5facb17edfef9e28474c96413d 255 SMART SM00382 30 213 4.9E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0928 1e981c5facb17edfef9e28474c96413d 255 Gene3D G3DSA:3.40.50.300 6 231 5.7E-64 T 14-10-2018 Thimo_0928 1e981c5facb17edfef9e28474c96413d 255 SUPERFAMILY SSF52540 4 214 8.88E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0928 1e981c5facb17edfef9e28474c96413d 255 Pfam PF00005 ABC transporter 21 167 1.2E-27 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0928 1e981c5facb17edfef9e28474c96413d 255 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2737 cf7d77c99a8ead735b8ab2e4e470d89d 216 Gene3D G3DSA:3.20.80.10 27 213 8.6E-37 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Thimo_2737 cf7d77c99a8ead735b8ab2e4e470d89d 216 SUPERFAMILY SSF55136 21 207 1.15E-46 T 14-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Thimo_2737 cf7d77c99a8ead735b8ab2e4e470d89d 216 Pfam PF04832 SOUL heme-binding protein 28 206 6.8E-42 T 14-10-2018 IPR006917 SOUL haem-binding protein Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 Pfam PF13375 RnfC Barrel sandwich hybrid domain 16 106 9.2E-18 T 14-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 Pfam PF10531 SLBB domain 302 349 3.6E-11 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 Gene3D G3DSA:3.40.50.11540 141 297 7.2E-17 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 457 124.212 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 SUPERFAMILY SSF46548 340 447 1.1E-14 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 15 450 2.8E-138 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 SUPERFAMILY SSF142019 120 309 3.14E-54 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 Gene3D G3DSA:1.10.1060.10 372 449 6.9E-9 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 137 287 2.3E-49 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 382 393 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0234 65bde2bc6ba956b62e941d713ec6aed6 457 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 421 432 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0038 41e0f9906cb571587ae048d5faab2f6d 144 Pfam PF01850 PIN domain 4 127 1.7E-7 T 14-10-2018 IPR002716 PIN domain Thimo_0038 41e0f9906cb571587ae048d5faab2f6d 144 SUPERFAMILY SSF88723 3 126 1.18E-13 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_0038 41e0f9906cb571587ae048d5faab2f6d 144 TIGRFAM TIGR00028 Mtu_PIN_fam: toxin-antitoxin system PIN domain toxin 2 124 5.2E-28 T 14-10-2018 IPR006226 PIN domain toxin GO:0016788 Thimo_0038 41e0f9906cb571587ae048d5faab2f6d 144 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 137 11.856 T 14-10-2018 IPR022907 VapC family GO:0004540 Thimo_1207 ddde9fdb29502a659b29ca3812e9b845 398 Pfam PF00155 Aminotransferase class I and II 32 386 5.2E-41 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Thimo_1207 ddde9fdb29502a659b29ca3812e9b845 398 Gene3D G3DSA:3.90.1150.10 13 383 4.1E-114 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_1207 ddde9fdb29502a659b29ca3812e9b845 398 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 394 1.3E-195 T 14-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 Thimo_1207 ddde9fdb29502a659b29ca3812e9b845 398 SUPERFAMILY SSF53383 2 394 2.64E-86 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1207 ddde9fdb29502a659b29ca3812e9b845 398 Gene3D G3DSA:3.40.640.10 43 292 4.1E-114 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_0413 35957ebb4fea0592ebf1d8ed28a4096a 591 Gene3D G3DSA:3.10.20.310 25 110 8.4E-9 T 14-10-2018 Thimo_0413 35957ebb4fea0592ebf1d8ed28a4096a 591 Gene3D G3DSA:3.10.20.310 196 272 1.6E-19 T 14-10-2018 Thimo_0413 35957ebb4fea0592ebf1d8ed28a4096a 591 Gene3D G3DSA:3.10.20.310 111 195 1.3E-11 T 14-10-2018 Thimo_0413 35957ebb4fea0592ebf1d8ed28a4096a 591 Pfam PF01103 Surface antigen 279 587 4.5E-29 T 14-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Thimo_0413 35957ebb4fea0592ebf1d8ed28a4096a 591 Pfam PF07244 Surface antigen variable number repeat 196 265 8.5E-5 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Thimo_0413 35957ebb4fea0592ebf1d8ed28a4096a 591 Gene3D G3DSA:2.40.160.50 273 591 1.0E-82 T 14-10-2018 Thimo_0413 35957ebb4fea0592ebf1d8ed28a4096a 591 Pfam PF17243 POTRA domain TamA domain 1 28 109 8.4E-19 T 14-10-2018 IPR035243 TamA, POTRA domain 1 Thimo_1565 621b0ebc9f9d2e480220a61367cbcfcc 229 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1565 621b0ebc9f9d2e480220a61367cbcfcc 229 Gene3D G3DSA:3.40.50.300 11 226 1.2E-62 T 14-10-2018 Thimo_1565 621b0ebc9f9d2e480220a61367cbcfcc 229 Pfam PF00005 ABC transporter 29 175 2.2E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1565 621b0ebc9f9d2e480220a61367cbcfcc 229 SMART SM00382 38 224 2.1E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1565 621b0ebc9f9d2e480220a61367cbcfcc 229 SUPERFAMILY SSF52540 15 225 3.68E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 SUPERFAMILY SSF160544 244 351 7.46E-39 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 352 2.9E-119 T 14-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 4.6E-122 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 Gene3D G3DSA:3.40.1690.10 218 358 5.3E-55 T 14-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 2.4E-40 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 2.4E-40 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 2.4E-40 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 2.4E-40 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Thimo_0283 1b3cbe60cd2e6a91d937f302cad6770d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 2.4E-40 T 14-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Thimo_1856 2beeaed2405f6bae010817af6b8def37 401 Pfam PF07075 Protein of unknown function (DUF1343) 24 400 1.0E-107 T 14-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 Thimo_1856 2beeaed2405f6bae010817af6b8def37 401 PIRSF PIRSF016719 1 401 7.5E-99 T 14-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 Thimo_1856 2beeaed2405f6bae010817af6b8def37 401 Gene3D G3DSA:3.40.50.12170 4 400 3.1E-100 T 14-10-2018 Thimo_1856 2beeaed2405f6bae010817af6b8def37 401 Gene3D G3DSA:3.90.1150.140 222 385 3.1E-100 T 14-10-2018 Thimo_0295 10af5e89435c41740bb5a86b3fe287cf 201 Pfam PF10881 Protein of unknown function (DUF2726) 39 161 1.4E-24 T 14-10-2018 IPR024402 Domain of unknown function DUF2726 Thimo_1615 37c5a95acc7f7f269efa44df0219e16e 296 Gene3D G3DSA:3.40.50.1100 37 155 6.9E-109 T 14-10-2018 Thimo_1615 37c5a95acc7f7f269efa44df0219e16e 296 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 14-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Thimo_1615 37c5a95acc7f7f269efa44df0219e16e 296 Gene3D G3DSA:3.40.50.1100 10 290 6.9E-109 T 14-10-2018 Thimo_1615 37c5a95acc7f7f269efa44df0219e16e 296 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 283 3.8E-66 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Thimo_1615 37c5a95acc7f7f269efa44df0219e16e 296 SUPERFAMILY SSF53686 2 294 1.31E-91 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Thimo_1615 37c5a95acc7f7f269efa44df0219e16e 296 TIGRFAM TIGR01138 cysM: cysteine synthase B 5 294 6.4E-141 T 14-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Thimo_1615 37c5a95acc7f7f269efa44df0219e16e 296 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 294 1.1E-120 T 14-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Thimo_0561 333d6a6adfb40997d5a26c26426739a5 166 Pfam PF10504 Protein of unknown function (DUF2452) 17 157 1.1E-51 T 14-10-2018 IPR019534 Protein of unknown function DUF2452 Thimo_0877 a4838d1e1633a37eb37e77449a13f123 212 SUPERFAMILY SSF52317 4 184 2.07E-39 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0877 a4838d1e1633a37eb37e77449a13f123 212 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 183 9.4E-53 T 14-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0877 a4838d1e1633a37eb37e77449a13f123 212 Gene3D G3DSA:3.40.50.880 2 197 2.3E-54 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_0877 a4838d1e1633a37eb37e77449a13f123 212 Pfam PF01174 SNO glutamine amidotransferase family 6 187 1.7E-41 T 14-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0877 a4838d1e1633a37eb37e77449a13f123 212 PIRSF PIRSF005639 1 190 1.3E-55 T 14-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0877 a4838d1e1633a37eb37e77449a13f123 212 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 186 31.344 T 14-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 Gene3D G3DSA:1.10.1060.10 11 141 2.1E-23 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 26 131 5.7E-24 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 469 1.5E-27 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 3.1E-23 T 14-10-2018 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 PRINTS PR00419 Adrenodoxin reductase family signature 210 220 3.1E-23 T 14-10-2018 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 3.1E-23 T 14-10-2018 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 PRINTS PR00419 Adrenodoxin reductase family signature 286 300 3.1E-23 T 14-10-2018 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 Gene3D G3DSA:3.50.50.60 249 405 2.5E-37 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 487 9.7E-225 T 14-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 SUPERFAMILY SSF51971 386 481 6.71E-11 T 14-10-2018 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 Gene3D G3DSA:3.40.50.720 142 248 4.7E-17 T 14-10-2018 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 SUPERFAMILY SSF51971 142 406 2.47E-67 T 14-10-2018 Thimo_0091 ac14fff36fe462219d9ce52e3e4aa8b2 488 SUPERFAMILY SSF46548 2 154 4.71E-41 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_1500 0111fe67cbff2a220b133012215d59a9 96 Hamap MF_02117 N(2)-fixation sustaining protein CowN [cowN]. 5 96 19.646 T 14-10-2018 IPR024899 Nitrogen fixation-sustaining protein CowN GO:0009399 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 133 155 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 309 334 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 365 382 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 342 353 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 187 206 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 105 120 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PRINTS PR00477 Phosphoglycerate kinase family signature 164 186 5.8E-78 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 PIRSF PIRSF000724 1 393 2.0E-134 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 Gene3D G3DSA:3.40.50.1260 8 387 1.6E-147 T 14-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 Gene3D G3DSA:3.40.50.1260 166 379 1.6E-147 T 14-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 SUPERFAMILY SSF53748 3 388 6.12E-143 T 14-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 389 38.593 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 Pfam PF00162 Phosphoglycerate kinase 7 379 9.3E-142 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_2174 e3f597b3fa9d30eef428e06ab10ef3a4 393 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 14-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Thimo_1029 4bb0cf5ef4c626bfc491040cb0f40368 303 Gene3D G3DSA:3.30.420.10 123 276 5.7E-12 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_1029 4bb0cf5ef4c626bfc491040cb0f40368 303 Pfam PF00665 Integrase core domain 128 244 1.7E-28 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_1029 4bb0cf5ef4c626bfc491040cb0f40368 303 SUPERFAMILY SSF53098 122 286 2.88E-37 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1029 4bb0cf5ef4c626bfc491040cb0f40368 303 Pfam PF13276 HTH-like domain 47 103 4.6E-15 T 14-10-2018 IPR025948 HTH-like domain Thimo_2472 eabba98114923c13db5229ccd539e152 183 Pfam PF04366 Las17-binding protein actin regulator 96 179 9.7E-10 T 14-10-2018 IPR007461 Ysc84 actin-binding domain Thimo_3359 17d2f04fedf7ceb0811d02ca89e12653 149 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 18 128 7.0E-29 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3359 17d2f04fedf7ceb0811d02ca89e12653 149 Gene3D G3DSA:3.40.50.12280 2 149 1.6E-51 T 14-10-2018 Thimo_3359 17d2f04fedf7ceb0811d02ca89e12653 149 SUPERFAMILY SSF56770 6 137 8.24E-53 T 14-10-2018 Thimo_3401 55c64e247a5ecfdc46c5951079729cca 145 Pfam PF07883 Cupin domain 62 131 2.9E-12 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Thimo_3401 55c64e247a5ecfdc46c5951079729cca 145 Gene3D G3DSA:2.60.120.10 40 140 2.0E-16 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_3401 55c64e247a5ecfdc46c5951079729cca 145 SUPERFAMILY SSF51182 47 139 1.46E-18 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Thimo_3206 22c28c12f6d5796f7e87edf2038aae7b 490 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 237 261 8.3E-11 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3206 22c28c12f6d5796f7e87edf2038aae7b 490 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 330 349 8.3E-11 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3206 22c28c12f6d5796f7e87edf2038aae7b 490 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 128 147 8.3E-11 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3206 22c28c12f6d5796f7e87edf2038aae7b 490 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 382 408 8.3E-11 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3206 22c28c12f6d5796f7e87edf2038aae7b 490 Pfam PF00361 Proton-conducting membrane transporter 123 421 1.8E-52 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1507 70cd85c80224375d7c3d3df9ed296452 257 Pfam PF11251 Protein of unknown function (DUF3050) 16 249 1.5E-85 T 14-10-2018 IPR024423 Protein of unknown function DUF3050 Thimo_1507 70cd85c80224375d7c3d3df9ed296452 257 Gene3D G3DSA:1.20.910.10 8 255 5.1E-40 T 14-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Thimo_1507 70cd85c80224375d7c3d3df9ed296452 257 SUPERFAMILY SSF48613 117 254 1.6E-6 T 14-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 5 373 2.6E-158 T 14-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 Gene3D G3DSA:3.40.630.10 7 362 2.8E-129 T 14-10-2018 Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 135 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 375 51.805 T 14-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 Pfam PF01546 Peptidase family M20/M25/M40 62 371 1.3E-45 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 SUPERFAMILY SSF55031 179 286 6.58E-25 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 Pfam PF07687 Peptidase dimerisation domain 175 279 3.7E-21 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 SUPERFAMILY SSF53187 3 374 2.19E-66 T 14-10-2018 Thimo_2017 2bc47f18f30944672b64b351e9ba0344 376 Gene3D G3DSA:3.30.70.360 179 292 2.8E-129 T 14-10-2018 Thimo_0443 d2e2ecb28985a7217e111fa802dc48e7 206 Gene3D G3DSA:3.40.30.10 33 202 3.4E-50 T 14-10-2018 Thimo_0443 d2e2ecb28985a7217e111fa802dc48e7 206 Pfam PF02630 SCO1/SenC 44 182 4.6E-37 T 14-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_0443 d2e2ecb28985a7217e111fa802dc48e7 206 SUPERFAMILY SSF52833 43 202 5.47E-49 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0937 b7790407f0611cbcba4af19f4ea9693c 411 Gene3D G3DSA:3.40.50.150 142 411 9.1E-95 T 14-10-2018 Thimo_0937 b7790407f0611cbcba4af19f4ea9693c 411 PIRSF PIRSF003085 17 411 4.3E-120 T 14-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 Thimo_0937 b7790407f0611cbcba4af19f4ea9693c 411 Pfam PF02353 Mycolic acid cyclopropane synthetase 136 404 5.5E-83 T 14-10-2018 Thimo_0937 b7790407f0611cbcba4af19f4ea9693c 411 SUPERFAMILY SSF53335 145 407 1.02E-69 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2998 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 90 118 1.6E-50 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 123 145 1.6E-50 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 232 257 1.6E-50 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 34 55 1.6E-50 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 179 205 1.6E-50 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 Gene3D G3DSA:1.20.85.10 2 170 6.9E-60 T 14-10-2018 IPR036854 Photosystem II protein D1/D2 superfamily GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 SUPERFAMILY SSF81483 3 280 1.05E-92 T 14-10-2018 IPR036854 Photosystem II protein D1/D2 superfamily GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 Gene3D G3DSA:1.20.85.10 173 280 5.0E-41 T 14-10-2018 IPR036854 Photosystem II protein D1/D2 superfamily GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 Pfam PF00124 Photosynthetic reaction centre protein 30 279 3.7E-90 T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 TIGRFAM TIGR01157 pufL: photosynthetic reaction center L subunit 35 279 5.0E-104 T 14-10-2018 IPR005871 Photosynthetic reaction centre, L subunit GO:0019684|GO:0030077|GO:0045156 Thimo_2998 f94a8f8245214601ec513730d5b09363 280 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 173 199 - T 14-10-2018 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 Thimo_2755 4c0df1c22571890562ae3b988736a07d 276 Pfam PF00005 ABC transporter 31 178 4.6E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2755 4c0df1c22571890562ae3b988736a07d 276 SMART SM00382 39 234 1.4E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2755 4c0df1c22571890562ae3b988736a07d 276 SUPERFAMILY SSF52540 13 244 2.85E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2755 4c0df1c22571890562ae3b988736a07d 276 Gene3D G3DSA:3.40.50.300 13 264 1.6E-63 T 14-10-2018 Thimo_0324 0f468b34bf6f66d7b792c47f76fc40d6 94 Pfam PF09827 CRISPR associated protein Cas2 7 66 2.6E-9 T 14-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Thimo_0324 0f468b34bf6f66d7b792c47f76fc40d6 94 SUPERFAMILY SSF143430 7 72 3.79E-16 T 14-10-2018 Thimo_0324 0f468b34bf6f66d7b792c47f76fc40d6 94 Gene3D G3DSA:3.30.70.240 1 86 2.9E-14 T 14-10-2018 Thimo_0324 0f468b34bf6f66d7b792c47f76fc40d6 94 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 4 92 10.763 T 14-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Thimo_3341 1b9601548a7cbce6c0113ff9244c425f 420 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3341 1b9601548a7cbce6c0113ff9244c425f 420 Pfam PF13183 4Fe-4S dicluster domain 25 112 1.7E-11 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_3341 1b9601548a7cbce6c0113ff9244c425f 420 SUPERFAMILY SSF46548 14 127 6.54E-17 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_3341 1b9601548a7cbce6c0113ff9244c425f 420 Pfam PF02754 Cysteine-rich domain 307 393 3.4E-15 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_0423 db3ade5aadc3b527cba801ef5aeda028 154 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 9.3E-42 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type Thimo_0423 db3ade5aadc3b527cba801ef5aeda028 154 Gene3D G3DSA:1.10.10.10 1 138 1.5E-48 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0423 db3ade5aadc3b527cba801ef5aeda028 154 SUPERFAMILY SSF46785 2 132 6.19E-34 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0423 db3ade5aadc3b527cba801ef5aeda028 154 Pfam PF02082 Transcriptional regulator 1 83 4.5E-26 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type Thimo_0518 f9932445b09900f4c019431a92f298da 196 SUPERFAMILY SSF53697 3 186 3.03E-51 T 14-10-2018 Thimo_0518 f9932445b09900f4c019431a92f298da 196 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 186 35.011 T 14-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 Thimo_0518 f9932445b09900f4c019431a92f298da 196 Gene3D G3DSA:3.40.50.10490 1 186 1.9E-68 T 14-10-2018 Thimo_0518 f9932445b09900f4c019431a92f298da 196 Pfam PF13580 SIS domain 14 143 3.4E-26 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Thimo_2714 fe64b3aa8357e9afa8fdf032b6d4c5f7 128 Gene3D G3DSA:1.10.1220.160 5 111 7.4E-5 T 14-10-2018 IPR038472 DndE superfamily Thimo_2714 fe64b3aa8357e9afa8fdf032b6d4c5f7 128 Pfam PF08870 DNA sulphur modification protein DndE 8 115 1.2E-34 T 14-10-2018 IPR014969 DNA sulphur modification protein DndE Thimo_2714 fe64b3aa8357e9afa8fdf032b6d4c5f7 128 TIGRFAM TIGR03184 DNA_S_dndE: DNA sulfur modification protein DndE 8 111 7.3E-27 T 14-10-2018 IPR014969 DNA sulphur modification protein DndE Thimo_1648 e3dc08916da6417ac4b7f53f5ebb8581 201 Pfam PF00355 Rieske [2Fe-2S] domain 116 179 1.4E-10 T 14-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Thimo_1648 e3dc08916da6417ac4b7f53f5ebb8581 201 SUPERFAMILY SSF50022 34 193 2.52E-40 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Thimo_1648 e3dc08916da6417ac4b7f53f5ebb8581 201 PRINTS PR00162 Rieske 2Fe-2S subunit signature 166 178 1.2E-7 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Thimo_1648 e3dc08916da6417ac4b7f53f5ebb8581 201 PRINTS PR00162 Rieske 2Fe-2S subunit signature 122 133 1.2E-7 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Thimo_1648 e3dc08916da6417ac4b7f53f5ebb8581 201 PRINTS PR00162 Rieske 2Fe-2S subunit signature 153 165 1.2E-7 T 14-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Thimo_1648 e3dc08916da6417ac4b7f53f5ebb8581 201 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 12 194 1.1E-70 T 14-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Thimo_1648 e3dc08916da6417ac4b7f53f5ebb8581 201 Gene3D G3DSA:2.102.10.10 46 194 1.7E-46 T 14-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Thimo_1648 e3dc08916da6417ac4b7f53f5ebb8581 201 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 5 43 2.3E-12 T 14-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Thimo_2765 1016ba97526b8078c7bdc799e2b668d0 285 SUPERFAMILY SSF52540 1 156 1.09E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2765 1016ba97526b8078c7bdc799e2b668d0 285 PIRSF PIRSF005052 1 285 2.7E-109 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 Thimo_2765 1016ba97526b8078c7bdc799e2b668d0 285 Pfam PF03668 P-loop ATPase protein family 1 284 9.0E-95 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 Thimo_2765 1016ba97526b8078c7bdc799e2b668d0 285 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 285 38.362 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 Thimo_2765 1016ba97526b8078c7bdc799e2b668d0 285 Gene3D G3DSA:3.40.50.300 1 162 6.1E-5 T 14-10-2018 Thimo_1976 a33db72723ab7ba898511bc3d3e2593d 373 Gene3D G3DSA:3.40.50.2000 176 349 8.7E-55 T 14-10-2018 Thimo_1976 a33db72723ab7ba898511bc3d3e2593d 373 Gene3D G3DSA:3.40.50.2000 18 175 8.7E-55 T 14-10-2018 Thimo_1976 a33db72723ab7ba898511bc3d3e2593d 373 SUPERFAMILY SSF53756 7 364 5.97E-66 T 14-10-2018 Thimo_1976 a33db72723ab7ba898511bc3d3e2593d 373 Pfam PF13439 Glycosyltransferase Family 4 18 178 9.1E-17 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1976 a33db72723ab7ba898511bc3d3e2593d 373 Pfam PF00534 Glycosyl transferases group 1 195 340 2.0E-29 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_1373 5cf2a5f9fe0eb9402fba22ae22551252 245 Pfam PF06764 Protein of unknown function (DUF1223) 34 228 2.1E-50 T 14-10-2018 IPR010634 Protein of unknown function DUF1223 Thimo_1373 5cf2a5f9fe0eb9402fba22ae22551252 245 SUPERFAMILY SSF52833 29 241 2.01E-52 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2072 5b0dabeea14465db52ba8b8ebaa11b27 361 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 15 292 3.4E-76 T 14-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Thimo_2072 5b0dabeea14465db52ba8b8ebaa11b27 361 SUPERFAMILY SSF51445 5 291 2.42E-82 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_2072 5b0dabeea14465db52ba8b8ebaa11b27 361 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 5 340 50.752 T 14-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 Thimo_2072 5b0dabeea14465db52ba8b8ebaa11b27 361 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 238 255 - T 14-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 Thimo_2072 5b0dabeea14465db52ba8b8ebaa11b27 361 Gene3D G3DSA:3.20.20.300 3 352 1.2E-115 T 14-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 Thimo_2577 9b3bea92818a4e2c9925e87a75ccc3f2 75 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 9 64 5.7E-18 T 14-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 Thimo_2577 9b3bea92818a4e2c9925e87a75ccc3f2 75 SUPERFAMILY SSF54786 5 70 3.81E-17 T 14-10-2018 Thimo_2577 9b3bea92818a4e2c9925e87a75ccc3f2 75 Gene3D G3DSA:3.30.920.30 7 67 4.7E-16 T 14-10-2018 IPR038570 HicA superfamily Thimo_2362 0ec9723027987026943307b9a0fdd919 247 Pfam PF14358 Domain of unknown function (DUF4405) 10 59 1.3E-6 T 14-10-2018 IPR025517 Domain of unknown function DUF4405 Thimo_1450 3f5b2865a9797901ea8eff7c1714c915 603 Pfam PF04055 Radical SAM superfamily 214 373 1.5E-12 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_1450 3f5b2865a9797901ea8eff7c1714c915 603 Gene3D G3DSA:3.80.30.20 210 410 1.1E-19 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_1450 3f5b2865a9797901ea8eff7c1714c915 603 SUPERFAMILY SSF102114 213 444 3.4E-30 T 14-10-2018 Thimo_1450 3f5b2865a9797901ea8eff7c1714c915 603 SMART SM00729 208 425 1.2E-19 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0987 f518013f7cc6c7c2d342b1122b7c9d71 246 Pfam PF04754 Putative transposase, YhgA-like 1 159 3.4E-35 T 14-10-2018 IPR006842 Transposase (putative), YhgA-like Thimo_0095 1453fa75ccd29f1bacad67e0f5198c53 111 SMART SM00418 20 98 9.9E-26 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_0095 1453fa75ccd29f1bacad67e0f5198c53 111 Gene3D G3DSA:1.10.10.10 10 106 5.1E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0095 1453fa75ccd29f1bacad67e0f5198c53 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 22 37 2.0E-9 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_0095 1453fa75ccd29f1bacad67e0f5198c53 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 2.0E-9 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_0095 1453fa75ccd29f1bacad67e0f5198c53 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 2.0E-9 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_0095 1453fa75ccd29f1bacad67e0f5198c53 111 Pfam PF01022 Bacterial regulatory protein, arsR family 28 71 1.0E-13 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_0095 1453fa75ccd29f1bacad67e0f5198c53 111 SUPERFAMILY SSF46785 11 101 8.56E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0119 047f56f8bf9e5adfea3308f6d1457fe7 658 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 4 170 6.3E-36 T 14-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Thimo_0119 047f56f8bf9e5adfea3308f6d1457fe7 658 SUPERFAMILY SSF53067 1 311 1.49E-7 T 14-10-2018 Thimo_0119 047f56f8bf9e5adfea3308f6d1457fe7 658 Pfam PF01968 Hydantoinase/oxoprolinase 192 468 9.9E-94 T 14-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Thimo_0589 9f139dd0fe358fd384cf084b33c53053 183 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 36 182 2.5E-52 T 14-10-2018 Thimo_0589 9f139dd0fe358fd384cf084b33c53053 183 Gene3D G3DSA:1.10.10.1590 27 100 2.2E-26 T 14-10-2018 Thimo_0589 9f139dd0fe358fd384cf084b33c53053 183 Gene3D G3DSA:3.40.30.10 101 183 4.1E-26 T 14-10-2018 Thimo_0589 9f139dd0fe358fd384cf084b33c53053 183 SUPERFAMILY SSF52833 28 182 1.01E-51 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0589 9f139dd0fe358fd384cf084b33c53053 183 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 140 158 - T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0589 9f139dd0fe358fd384cf084b33c53053 183 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 36 183 3.5E-56 T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0589 9f139dd0fe358fd384cf084b33c53053 183 PIRSF PIRSF000216 12 183 2.2E-59 T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3146 efd7c3177027c9f94b46e47849864b2b 231 Gene3D G3DSA:1.10.10.60 128 229 7.9E-23 T 14-10-2018 Thimo_3146 efd7c3177027c9f94b46e47849864b2b 231 SUPERFAMILY SSF46689 130 177 4.93E-6 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3146 efd7c3177027c9f94b46e47849864b2b 231 Pfam PF12833 Helix-turn-helix domain 151 224 5.8E-16 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_3146 efd7c3177027c9f94b46e47849864b2b 231 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 180 221 - T 14-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Thimo_3146 efd7c3177027c9f94b46e47849864b2b 231 SMART SM00342 143 225 7.1E-16 T 14-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Thimo_3146 efd7c3177027c9f94b46e47849864b2b 231 SUPERFAMILY SSF46689 180 227 9.41E-8 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_2075 6bd6d8bc160092a723575a9b9b8804ae 344 Gene3D G3DSA:3.40.109.10 118 343 1.8E-47 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Thimo_2075 6bd6d8bc160092a723575a9b9b8804ae 344 SUPERFAMILY SSF55469 124 332 5.92E-11 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Thimo_2075 6bd6d8bc160092a723575a9b9b8804ae 344 SUPERFAMILY SSF55469 11 101 7.33E-12 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Thimo_2075 6bd6d8bc160092a723575a9b9b8804ae 344 Gene3D G3DSA:3.40.109.10 25 113 2.1E-23 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Thimo_2075 6bd6d8bc160092a723575a9b9b8804ae 344 Pfam PF00881 Nitroreductase family 131 325 4.0E-8 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Thimo_2713 444768fdc6fa5972ec016a6cf1a32d7a 671 TIGRFAM TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD 1 664 3.3E-181 T 14-10-2018 IPR017599 DNA sulphur modification protein DndD Thimo_2713 444768fdc6fa5972ec016a6cf1a32d7a 671 Pfam PF13476 AAA domain 5 283 1.4E-19 T 14-10-2018 IPR038729 Rad50/SbcC-type AAA domain Thimo_2713 444768fdc6fa5972ec016a6cf1a32d7a 671 Gene3D G3DSA:3.40.50.300 352 639 4.0E-16 T 14-10-2018 Thimo_2713 444768fdc6fa5972ec016a6cf1a32d7a 671 Gene3D G3DSA:3.40.50.300 1 342 1.4E-21 T 14-10-2018 Thimo_2713 444768fdc6fa5972ec016a6cf1a32d7a 671 SUPERFAMILY SSF52540 1 638 2.21E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0165 c8a0f0a20e327d7846c803bed48b361b 268 SUPERFAMILY SSF52540 32 232 2.18E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0165 c8a0f0a20e327d7846c803bed48b361b 268 Pfam PF07728 AAA domain (dynein-related subfamily) 36 170 3.6E-31 T 14-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Thimo_0165 c8a0f0a20e327d7846c803bed48b361b 268 Gene3D G3DSA:3.40.50.300 22 188 1.8E-29 T 14-10-2018 Thimo_0165 c8a0f0a20e327d7846c803bed48b361b 268 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 183 266 4.4E-34 T 14-10-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 Gene3D G3DSA:3.30.70.2190 225 340 7.0E-5 T 14-10-2018 Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 Gene3D G3DSA:1.10.45.10 426 465 4.1E-13 T 14-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 SUPERFAMILY SSF55103 228 468 6.05E-69 T 14-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 Gene3D G3DSA:3.30.70.2740 344 425 5.5E-16 T 14-10-2018 Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 SUPERFAMILY SSF56176 14 225 1.54E-65 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 Pfam PF01565 FAD binding domain 49 187 3.1E-33 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 Gene3D G3DSA:3.30.465.10 103 223 5.7E-42 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 Pfam PF02913 FAD linked oxidases, C-terminal domain 225 464 3.1E-64 T 14-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Thimo_1464 256a4d15b9e2b14f5ab854b471de6111 472 Gene3D G3DSA:3.30.43.10 4 101 4.4E-19 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Thimo_3028 a781456d5b65247b74d16f69fa43b00e 289 Pfam PF08241 Methyltransferase domain 51 147 3.4E-26 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_3028 a781456d5b65247b74d16f69fa43b00e 289 Gene3D G3DSA:3.40.50.150 5 209 3.3E-36 T 14-10-2018 Thimo_3028 a781456d5b65247b74d16f69fa43b00e 289 SUPERFAMILY SSF53335 12 243 3.22E-41 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3028 a781456d5b65247b74d16f69fa43b00e 289 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 6 264 33.482 T 14-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 Thimo_3028 a781456d5b65247b74d16f69fa43b00e 289 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 14 263 2.5E-74 T 14-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 Thimo_1598 e7a6863c8ffa8b97acf00095a3f4e1e3 140 Pfam PF03061 Thioesterase superfamily 31 103 1.2E-15 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Thimo_1598 e7a6863c8ffa8b97acf00095a3f4e1e3 140 Gene3D G3DSA:3.10.129.10 8 139 1.2E-36 T 14-10-2018 Thimo_1598 e7a6863c8ffa8b97acf00095a3f4e1e3 140 SUPERFAMILY SSF54637 16 133 2.73E-35 T 14-10-2018 IPR029069 HotDog domain superfamily Thimo_2050 b94da451feb4955518316842afba8df4 154 Pfam PF00210 Ferritin-like domain 10 142 8.6E-27 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 153 1.5E-61 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 Gene3D G3DSA:1.20.1260.10 1 154 7.7E-50 T 14-10-2018 IPR012347 Ferritin-like Thimo_2050 b94da451feb4955518316842afba8df4 154 SUPERFAMILY SSF47240 1 150 7.22E-39 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_2050 b94da451feb4955518316842afba8df4 154 PIRSF PIRSF002560 1 154 2.4E-55 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 3 22 1.7E-48 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 128 149 1.7E-48 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 23 43 1.7E-48 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 65 85 1.7E-48 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 107 127 1.7E-48 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 44 64 1.7E-48 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_2050 b94da451feb4955518316842afba8df4 154 PRINTS PR00601 Bacterioferritin signature 86 106 1.7E-48 T 14-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Thimo_3735 c95cd98e83f6e6454797e151e6843666 519 SUPERFAMILY SSF52540 80 407 2.69E-5 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3313 947a1f30b55a69448f66fb6d68b52115 287 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 125 145 - T 14-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Thimo_3313 947a1f30b55a69448f66fb6d68b52115 287 Pfam PF00378 Enoyl-CoA hydratase/isomerase 34 281 9.2E-77 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Thimo_3313 947a1f30b55a69448f66fb6d68b52115 287 TIGRFAM TIGR01929 menB: naphthoate synthase 26 283 2.0E-129 T 14-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 Thimo_3313 947a1f30b55a69448f66fb6d68b52115 287 Gene3D G3DSA:3.90.226.10 8 224 1.3E-73 T 14-10-2018 Thimo_3313 947a1f30b55a69448f66fb6d68b52115 287 Gene3D G3DSA:1.10.12.10 225 275 4.4E-26 T 14-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Thimo_3313 947a1f30b55a69448f66fb6d68b52115 287 SUPERFAMILY SSF52096 22 283 3.27E-77 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_3313 947a1f30b55a69448f66fb6d68b52115 287 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 18 286 53.499 T 14-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 Thimo_1988 d1534b477d6e52e129b6910efa3b392e 106 SUPERFAMILY SSF81301 12 106 1.21E-15 T 14-10-2018 Thimo_1988 d1534b477d6e52e129b6910efa3b392e 106 Gene3D G3DSA:3.30.460.10 2 101 7.0E-18 T 14-10-2018 Thimo_1988 d1534b477d6e52e129b6910efa3b392e 106 Pfam PF01909 Nucleotidyltransferase domain 14 90 3.4E-8 T 14-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Thimo_1440 deb37ce141d8cab449a3ab7ae9656595 411 SUPERFAMILY SSF52540 121 377 2.96E-25 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1440 deb37ce141d8cab449a3ab7ae9656595 411 Gene3D G3DSA:3.40.50.300 33 408 8.9E-109 T 14-10-2018 Thimo_1440 deb37ce141d8cab449a3ab7ae9656595 411 Pfam PF13469 Sulfotransferase family 121 369 1.5E-40 T 14-10-2018 Thimo_2808 43a4bb7f66320d1680768ff66e40bc6f 384 SUPERFAMILY SSF54966 5 118 2.47E-16 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2808 43a4bb7f66320d1680768ff66e40bc6f 384 SUPERFAMILY SSF51649 118 361 1.96E-67 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2808 43a4bb7f66320d1680768ff66e40bc6f 384 Gene3D G3DSA:3.30.70.150 7 118 7.7E-33 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2808 43a4bb7f66320d1680768ff66e40bc6f 384 Gene3D G3DSA:3.20.20.110 119 383 4.6E-90 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_2808 43a4bb7f66320d1680768ff66e40bc6f 384 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 127 360 1.7E-28 T 14-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_3026 764fde6c85fd32a9b0fa1389c6877204 168 TIGRFAM TIGR02020 BchF: 2-vinyl bacteriochlorophyllide hydratase 13 153 7.3E-60 T 14-10-2018 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 Thimo_3026 764fde6c85fd32a9b0fa1389c6877204 168 Pfam PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) 14 150 7.7E-64 T 14-10-2018 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 Thimo_1835 4fcf6be4262a72d7747aaef966726b24 298 SUPERFAMILY SSF52833 6 218 4.84E-27 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_1835 4fcf6be4262a72d7747aaef966726b24 298 Gene3D G3DSA:1.10.472.60 47 183 6.1E-39 T 14-10-2018 Thimo_1835 4fcf6be4262a72d7747aaef966726b24 298 Pfam PF13743 Thioredoxin 11 203 6.1E-29 T 14-10-2018 Thimo_1835 4fcf6be4262a72d7747aaef966726b24 298 Gene3D G3DSA:3.40.30.10 12 200 6.1E-39 T 14-10-2018 Thimo_3778 181f7d193b354f5275c59128ba4ac606 851 Pfam PF08665 PglZ domain 466 636 1.6E-13 T 14-10-2018 IPR013973 PglZ domain Thimo_0573 e98f18d2d98b3537169e7f30b0bfa649 422 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 360 418 8.8E-8 T 14-10-2018 IPR006260 TonB/TolA, C-terminal Thimo_0573 e98f18d2d98b3537169e7f30b0bfa649 422 TIGRFAM TIGR02794 tolA_full: protein TolA 9 226 1.7E-23 T 14-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 Thimo_0573 e98f18d2d98b3537169e7f30b0bfa649 422 TIGRFAM TIGR02794 tolA_full: protein TolA 207 419 3.8E-36 T 14-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 Thimo_0573 e98f18d2d98b3537169e7f30b0bfa649 422 Pfam PF13103 TonB C terminal 333 416 8.5E-17 T 14-10-2018 Thimo_0573 e98f18d2d98b3537169e7f30b0bfa649 422 SUPERFAMILY SSF74653 330 419 7.19E-17 T 14-10-2018 Thimo_0573 e98f18d2d98b3537169e7f30b0bfa649 422 Gene3D G3DSA:3.30.1150.10 326 420 3.7E-23 T 14-10-2018 Thimo_0025 1c828d669bff992098fdf70efd3ade46 119 Pfam PF01850 PIN domain 4 112 1.2E-8 T 14-10-2018 IPR002716 PIN domain Thimo_0025 1c828d669bff992098fdf70efd3ade46 119 SUPERFAMILY SSF88723 1 117 2.19E-13 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_3653 c509fa142d69a359866c83968b7e3caf 346 Pfam PF00248 Aldo/keto reductase family 16 329 3.2E-71 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain Thimo_3653 c509fa142d69a359866c83968b7e3caf 346 SUPERFAMILY SSF51430 1 344 5.11E-108 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Thimo_3653 c509fa142d69a359866c83968b7e3caf 346 Gene3D G3DSA:3.20.20.100 1 346 2.9E-130 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Thimo_2376 a521603b2667dd5eeabf022b0e0108ed 347 Pfam PF02618 YceG-like family 46 330 2.8E-83 T 14-10-2018 IPR003770 Endolytic murein transglycosylase Thimo_2376 a521603b2667dd5eeabf022b0e0108ed 347 Gene3D G3DSA:3.30.160.60 306 336 6.5E-12 T 14-10-2018 Thimo_2376 a521603b2667dd5eeabf022b0e0108ed 347 Gene3D G3DSA:1.10.8.1150 41 114 9.5E-7 T 14-10-2018 Thimo_2376 a521603b2667dd5eeabf022b0e0108ed 347 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 5 337 34.145 T 14-10-2018 IPR003770 Endolytic murein transglycosylase Thimo_2376 a521603b2667dd5eeabf022b0e0108ed 347 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 10 333 4.2E-83 T 14-10-2018 IPR003770 Endolytic murein transglycosylase Thimo_3491 7400997c1c63a2add4e94a6b5fb5b845 224 SMART SM00287 21 87 1.2E-6 T 14-10-2018 IPR003646 SH3-like domain, bacterial-type Thimo_3491 7400997c1c63a2add4e94a6b5fb5b845 224 Pfam PF08239 Bacterial SH3 domain 34 81 2.3E-9 T 14-10-2018 IPR003646 SH3-like domain, bacterial-type Thimo_3491 7400997c1c63a2add4e94a6b5fb5b845 224 Gene3D G3DSA:2.30.30.40 21 83 4.7E-8 T 14-10-2018 Thimo_3491 7400997c1c63a2add4e94a6b5fb5b845 224 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 25 221 9.1E-61 T 14-10-2018 IPR016476 SH3 domain protein Thimo_3367 ab622f44e2deefaa08a4e1eed45465d8 198 Pfam PF04982 HPP family 72 194 8.9E-46 T 14-10-2018 IPR007065 HPP Thimo_0407 1837aa0eadb8d1de53e4a8342f7d1812 132 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 1 130 12.97 T 14-10-2018 IPR022907 VapC family GO:0004540 Thimo_0407 1837aa0eadb8d1de53e4a8342f7d1812 132 Gene3D G3DSA:3.40.50.1010 1 129 2.5E-44 T 14-10-2018 Thimo_0407 1837aa0eadb8d1de53e4a8342f7d1812 132 Pfam PF01850 PIN domain 1 125 1.0E-19 T 14-10-2018 IPR002716 PIN domain Thimo_0407 1837aa0eadb8d1de53e4a8342f7d1812 132 SUPERFAMILY SSF88723 1 128 2.42E-19 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_2935 aeffb6f205df0c1821a3d8639c1656c0 262 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 69 257 4.3E-56 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Thimo_2935 aeffb6f205df0c1821a3d8639c1656c0 262 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 69 257 1.2E-56 T 14-10-2018 Thimo_2935 aeffb6f205df0c1821a3d8639c1656c0 262 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 37 260 36.901 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Thimo_2935 aeffb6f205df0c1821a3d8639c1656c0 262 Gene3D G3DSA:3.40.50.150 53 262 8.2E-75 T 14-10-2018 Thimo_2935 aeffb6f205df0c1821a3d8639c1656c0 262 SUPERFAMILY SSF53335 66 256 1.41E-44 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1659 fe4db5c445ab98be827671a96c33baf4 84 Pfam PF00462 Glutaredoxin 4 63 4.5E-22 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Thimo_1659 fe4db5c445ab98be827671a96c33baf4 84 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 80 3.4E-33 T 14-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 Thimo_1659 fe4db5c445ab98be827671a96c33baf4 84 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 14-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 Thimo_1659 fe4db5c445ab98be827671a96c33baf4 84 Gene3D G3DSA:3.40.30.10 1 84 8.6E-28 T 14-10-2018 Thimo_1659 fe4db5c445ab98be827671a96c33baf4 84 PRINTS PR00160 Glutaredoxin signature 60 73 1.9E-14 T 14-10-2018 IPR014025 Glutaredoxin subgroup Thimo_1659 fe4db5c445ab98be827671a96c33baf4 84 PRINTS PR00160 Glutaredoxin signature 4 22 1.9E-14 T 14-10-2018 IPR014025 Glutaredoxin subgroup Thimo_1659 fe4db5c445ab98be827671a96c33baf4 84 PRINTS PR00160 Glutaredoxin signature 46 59 1.9E-14 T 14-10-2018 IPR014025 Glutaredoxin subgroup Thimo_1659 fe4db5c445ab98be827671a96c33baf4 84 SUPERFAMILY SSF52833 1 83 3.25E-28 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.2090.10 179 272 3.6E-233 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82714 182 266 4.45E-10 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82693 45 134 2.49E-15 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 6.7E-27 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 6.7E-27 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 6.7E-27 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 6.7E-27 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 6.7E-27 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 6.7E-27 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82866 809 1033 1.05E-43 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:1.20.1640.10 512 1030 3.6E-233 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82866 296 492 7.06E-30 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.2090.10 726 813 3.6E-233 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82714 734 810 5.36E-10 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Pfam PF00873 AcrB/AcrD/AcrF family 8 1031 8.6E-147 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 SUPERFAMILY SSF82693 142 327 9.94E-8 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.70.1430 44 821 3.6E-233 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.70.1320 137 327 3.6E-233 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:1.20.1640.10 14 511 3.6E-233 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.70.1440 681 870 3.6E-233 T 14-10-2018 Thimo_3481 5a9741c76ef0a68dace0db7e6abaa416 1055 Gene3D G3DSA:3.30.70.1430 573 680 3.6E-233 T 14-10-2018 Thimo_0554 52f8f166e5f328ea07248c72841e8fe2 147 Gene3D G3DSA:1.10.1510.10 1 89 1.3E-29 T 14-10-2018 Thimo_0554 52f8f166e5f328ea07248c72841e8fe2 147 Gene3D G3DSA:1.10.10.410 90 146 1.2E-19 T 14-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Thimo_0554 52f8f166e5f328ea07248c72841e8fe2 147 SUPERFAMILY SSF89095 2 145 2.25E-43 T 14-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Thimo_0554 52f8f166e5f328ea07248c72841e8fe2 147 Pfam PF09424 Yqey-like protein 4 145 9.3E-57 T 14-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 Thimo_0902 ea4652c0370390bfcbb941ed2dc3618c 101 Pfam PF14076 Domain of unknown function (DUF4258) 19 94 2.6E-6 T 14-10-2018 IPR025354 Protein of unknown function DUF4258 Thimo_1155 dff04cc506d348a26727dc552a74f1af 275 Pfam PF00005 ABC transporter 40 191 2.2E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1155 dff04cc506d348a26727dc552a74f1af 275 SMART SM00382 47 243 3.4E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1155 dff04cc506d348a26727dc552a74f1af 275 SUPERFAMILY SSF52540 18 262 6.41E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1155 dff04cc506d348a26727dc552a74f1af 275 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1155 dff04cc506d348a26727dc552a74f1af 275 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 24 274 1.1E-111 T 14-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 Thimo_1155 dff04cc506d348a26727dc552a74f1af 275 Gene3D G3DSA:3.40.50.300 25 273 9.3E-58 T 14-10-2018 Thimo_3496 6a6ce1f1377bafb584265ebf4f6f3ab8 230 Hamap MF_00415 Flagellar L-ring protein [flgH]. 5 227 25.251 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Thimo_3496 6a6ce1f1377bafb584265ebf4f6f3ab8 230 PRINTS PR01008 Flagellar L-ring protein signature 143 158 5.5E-26 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Thimo_3496 6a6ce1f1377bafb584265ebf4f6f3ab8 230 PRINTS PR01008 Flagellar L-ring protein signature 206 220 5.5E-26 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Thimo_3496 6a6ce1f1377bafb584265ebf4f6f3ab8 230 PRINTS PR01008 Flagellar L-ring protein signature 72 84 5.5E-26 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Thimo_3496 6a6ce1f1377bafb584265ebf4f6f3ab8 230 PRINTS PR01008 Flagellar L-ring protein signature 169 185 5.5E-26 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Thimo_3496 6a6ce1f1377bafb584265ebf4f6f3ab8 230 PRINTS PR01008 Flagellar L-ring protein signature 190 204 5.5E-26 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Thimo_3496 6a6ce1f1377bafb584265ebf4f6f3ab8 230 Pfam PF02107 Flagellar L-ring protein 51 227 2.3E-58 T 14-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Thimo_0217 b6ce4f19a4a83d7751f1cabacfb560d1 156 SUPERFAMILY SSF52200 6 113 1.01E-12 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_0217 b6ce4f19a4a83d7751f1cabacfb560d1 156 Pfam PF13676 TIR domain 14 112 9.7E-16 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_0217 b6ce4f19a4a83d7751f1cabacfb560d1 156 Gene3D G3DSA:3.40.50.10140 12 128 3.6E-14 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_0851 1feac6571ad5c73e8a99c62cd090959c 218 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 214 8.4E-75 T 14-10-2018 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 Thimo_0851 1feac6571ad5c73e8a99c62cd090959c 218 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 4 214 1.4E-80 T 14-10-2018 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 Thimo_0851 1feac6571ad5c73e8a99c62cd090959c 218 PIRSF PIRSF023956 1 217 1.3E-75 T 14-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 Thimo_0851 1feac6571ad5c73e8a99c62cd090959c 218 SUPERFAMILY SSF53335 1 214 1.9E-54 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0851 1feac6571ad5c73e8a99c62cd090959c 218 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 216 39.494 T 14-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 Thimo_0851 1feac6571ad5c73e8a99c62cd090959c 218 Gene3D G3DSA:3.40.50.150 16 216 3.7E-64 T 14-10-2018 Thimo_3734 75cb447df503da537ad9b66215d6a55a 596 Gene3D G3DSA:3.40.50.300 5 189 4.7E-5 T 14-10-2018 Thimo_3734 75cb447df503da537ad9b66215d6a55a 596 Pfam PF07693 KAP family P-loop domain 12 46 0.0011 T 14-10-2018 IPR011646 KAP family P-loop domain Thimo_3734 75cb447df503da537ad9b66215d6a55a 596 SUPERFAMILY SSF52540 25 175 4.28E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0211 c770e9f6f3ad99025cdbbf4b9cb59db5 155 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 15 150 7.4E-54 T 14-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0211 c770e9f6f3ad99025cdbbf4b9cb59db5 155 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 14 151 1.5E-57 T 14-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0211 c770e9f6f3ad99025cdbbf4b9cb59db5 155 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 9 154 31.424 T 14-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0211 c770e9f6f3ad99025cdbbf4b9cb59db5 155 Gene3D G3DSA:3.40.50.960 2 155 2.4E-60 T 14-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_0211 c770e9f6f3ad99025cdbbf4b9cb59db5 155 SUPERFAMILY SSF52121 4 154 5.36E-61 T 14-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Thimo_3712 bc5c8f7d39504eb6c68d9fcc876d63b8 362 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 22 263 3.7E-27 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Thimo_3712 bc5c8f7d39504eb6c68d9fcc876d63b8 362 Gene3D G3DSA:3.30.1780.10 10 329 8.7E-68 T 14-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Thimo_3712 bc5c8f7d39504eb6c68d9fcc876d63b8 362 PIRSF PIRSF001439 4 334 5.4E-49 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Thimo_3712 bc5c8f7d39504eb6c68d9fcc876d63b8 362 SUPERFAMILY SSF51735 7 332 4.06E-53 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3712 bc5c8f7d39504eb6c68d9fcc876d63b8 362 Gene3D G3DSA:3.40.50.720 136 307 8.7E-68 T 14-10-2018 Thimo_3577 098a6e49f08d0f3acb8f8b690f5aaca3 333 Gene3D G3DSA:3.40.50.300 80 188 2.1E-7 T 14-10-2018 Thimo_3577 098a6e49f08d0f3acb8f8b690f5aaca3 333 SUPERFAMILY SSF52540 84 289 3.56E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2993 b127ff8647c83148adbe81cd6b586f46 47 SUPERFAMILY SSF56918 4 47 1.57E-12 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2993 b127ff8647c83148adbe81cd6b586f46 47 Gene3D G3DSA:1.20.5.250 1 47 1.6E-18 T 14-10-2018 Thimo_2993 b127ff8647c83148adbe81cd6b586f46 47 PRINTS PR00674 Light harvesting protein B chain signature 29 46 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2993 b127ff8647c83148adbe81cd6b586f46 47 PRINTS PR00674 Light harvesting protein B chain signature 9 29 4.4E-6 T 14-10-2018 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2993 b127ff8647c83148adbe81cd6b586f46 47 Pfam PF00556 Antenna complex alpha/beta subunit 12 47 2.6E-10 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 82 93 7.1E-6 T 14-10-2018 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 55 64 7.1E-6 T 14-10-2018 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 PRINTS PR00096 Glutamine amidotransferase superfamily signature 178 191 7.1E-6 T 14-10-2018 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Pfam PF02540 NAD synthase 217 260 1.2E-6 T 14-10-2018 IPR022310 NAD/GMP synthase Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 SUPERFAMILY SSF52317 7 238 1.14E-56 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Pfam PF00958 GMP synthase C terminal domain 434 525 1.3E-42 T 14-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 SUPERFAMILY SSF54810 406 526 1.31E-48 T 14-10-2018 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 SUPERFAMILY SSF52402 198 419 2.21E-57 T 14-10-2018 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Gene3D G3DSA:3.40.50.880 10 207 1.8E-53 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 8 526 55.147 T 14-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 11 205 3.9E-76 T 14-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Pfam PF00117 Glutamine amidotransferase class-I 13 200 1.1E-39 T 14-10-2018 IPR017926 Glutamine amidotransferase Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Gene3D G3DSA:3.40.50.620 210 406 6.5E-76 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 526 5.1E-147 T 14-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Thimo_3599 a4ce878c6e1ac88a60ebcb5bee55c9c0 526 Gene3D G3DSA:3.30.300.10 407 526 4.1E-50 T 14-10-2018 Thimo_2403 7feca80efd1b61e4a22d854600a0b94c 121 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 8 96 4.2E-24 T 14-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Thimo_2403 7feca80efd1b61e4a22d854600a0b94c 121 Pfam PF03334 Na+/H+ antiporter subunit 8 85 1.6E-23 T 14-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Thimo_0019 45a92b8a6f7a2c61f7fa4ee2930bf016 352 Gene3D G3DSA:3.40.50.2000 147 315 1.2E-45 T 14-10-2018 Thimo_0019 45a92b8a6f7a2c61f7fa4ee2930bf016 352 Pfam PF00534 Glycosyl transferases group 1 166 312 6.8E-23 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_0019 45a92b8a6f7a2c61f7fa4ee2930bf016 352 SUPERFAMILY SSF53756 5 337 7.85E-61 T 14-10-2018 Thimo_0019 45a92b8a6f7a2c61f7fa4ee2930bf016 352 Gene3D G3DSA:3.40.50.2000 37 331 1.2E-45 T 14-10-2018 Thimo_1365 95b276207b52831b73503a6eae22f61d 488 SUPERFAMILY SSF50475 3 322 1.8E-127 T 14-10-2018 Thimo_1365 95b276207b52831b73503a6eae22f61d 488 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 72.445 T 14-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Thimo_1365 95b276207b52831b73503a6eae22f61d 488 Gene3D G3DSA:3.40.1670.10 337 454 3.0E-53 T 14-10-2018 Thimo_1365 95b276207b52831b73503a6eae22f61d 488 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 1.8E-173 T 14-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Thimo_1365 95b276207b52831b73503a6eae22f61d 488 SUPERFAMILY SSF143968 323 487 1.06E-68 T 14-10-2018 Thimo_1365 95b276207b52831b73503a6eae22f61d 488 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 431 2.0E-175 T 14-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Thimo_1365 95b276207b52831b73503a6eae22f61d 488 Gene3D G3DSA:1.20.5.570 455 488 3.6E-15 T 14-10-2018 Thimo_0240 32c6439d05ed7a69cf4358b5b81d51a9 347 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 98 270 1.3E-13 T 14-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Thimo_0240 32c6439d05ed7a69cf4358b5b81d51a9 347 PIRSF PIRSF015582 62 339 3.4E-46 T 14-10-2018 IPR011206 Citrate lyase beta subunit-like Thimo_0240 32c6439d05ed7a69cf4358b5b81d51a9 347 Gene3D G3DSA:3.20.20.60 11 282 9.1E-100 T 14-10-2018 Thimo_0240 32c6439d05ed7a69cf4358b5b81d51a9 347 SUPERFAMILY SSF51621 58 277 1.05E-40 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_2869 901efe3cde3284cb58583105993d1807 175 Pfam PF00466 Ribosomal protein L10 5 101 3.7E-25 T 14-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 Thimo_2869 901efe3cde3284cb58583105993d1807 175 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 25.471 T 14-10-2018 IPR022973 Ribosomal protein L10 Thimo_2869 901efe3cde3284cb58583105993d1807 175 Gene3D G3DSA:3.30.70.1730 5 169 2.5E-32 T 14-10-2018 Thimo_2869 901efe3cde3284cb58583105993d1807 175 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 14-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_2869 901efe3cde3284cb58583105993d1807 175 SUPERFAMILY SSF160369 4 170 5.36E-52 T 14-10-2018 Thimo_1113 bc2d127c6e6c13277057400e7c6a4438 596 SUPERFAMILY SSF48452 31 127 8.49E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1113 bc2d127c6e6c13277057400e7c6a4438 596 Gene3D G3DSA:1.25.40.10 48 164 6.8E-13 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1113 bc2d127c6e6c13277057400e7c6a4438 596 Pfam PF13432 Tetratricopeptide repeat 51 113 2.2E-9 T 14-10-2018 Thimo_1113 bc2d127c6e6c13277057400e7c6a4438 596 SMART SM00028 80 113 9.5E-5 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_3782 0c2884ebbf02c8d930745c993564b8f2 240 Pfam PF10053 Uncharacterized conserved protein (DUF2290) 67 231 3.3E-31 T 14-10-2018 IPR018742 Protein of unknown function DUF2290 Thimo_1743 8dde15e41a9c63f3b0cda956d9e00f58 195 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 11 164 2.9E-16 T 14-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Thimo_1743 8dde15e41a9c63f3b0cda956d9e00f58 195 SUPERFAMILY SSF56300 10 174 1.55E-29 T 14-10-2018 Thimo_1743 8dde15e41a9c63f3b0cda956d9e00f58 195 Gene3D G3DSA:3.60.21.10 9 179 3.0E-24 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Thimo_1743 8dde15e41a9c63f3b0cda956d9e00f58 195 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 11 162 5.2E-24 T 14-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Thimo_1164 39802c3d7739ffd53184261a73251871 132 Pfam PF03899 ATP synthase I chain 18 112 4.5E-15 T 14-10-2018 IPR005598 ATP synthase protein I Thimo_1285 7724c9313dc85ca9326675baf1e87c8f 487 Pfam PF11855 Protein of unknown function (DUF3375) 12 477 2.2E-154 T 14-10-2018 IPR021804 Protein of unknown function DUF3375 Thimo_1563 c8d3255feebf05e096d85f876b3d0573 416 SUPERFAMILY SSF53098 197 318 4.86E-11 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1563 c8d3255feebf05e096d85f876b3d0573 416 Pfam PF00665 Integrase core domain 207 299 2.3E-7 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_2716 8b236975c069e306090afd5e723a49d4 145 TIGRFAM TIGR04062 dnd_assoc_4: dnd system-associated protein 4 2 140 1.1E-25 T 14-10-2018 IPR023983 DNA sulphur modification system-associated protein 4 Thimo_2532 d307636adba48905cd60bc5bf3101c98 181 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 21 151 6.5E-24 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Thimo_0769 9b644847cbb05229e0c00408762e0cd5 314 SUPERFAMILY SSF52518 16 306 1.67E-52 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0769 9b644847cbb05229e0c00408762e0cd5 314 Gene3D G3DSA:3.40.50.970 14 314 7.4E-70 T 14-10-2018 Thimo_0769 9b644847cbb05229e0c00408762e0cd5 314 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 89 272 1.8E-20 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 Pfam PF12161 HsdM N-terminal domain 9 147 7.8E-20 T 14-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 Gene3D G3DSA:3.40.50.150 162 490 4.7E-89 T 14-10-2018 Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 199 3.9E-11 T 14-10-2018 Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 215 229 3.9E-11 T 14-10-2018 Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 291 303 3.9E-11 T 14-10-2018 Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 Gene3D G3DSA:1.20.1260.30 1 87 2.4E-5 T 14-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 SUPERFAMILY SSF53335 9 560 6.1E-111 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 Pfam PF02384 N-6 DNA Methylase 163 467 1.1E-53 T 14-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Thimo_3451 f11021cb51498f8f57817fafb0837b59 725 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 294 300 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Thimo_3178 f271d32056429ccdc5a35716e6bbd439 165 Gene3D G3DSA:3.40.1260.10 35 163 1.5E-13 T 14-10-2018 IPR027396 DsrEFH-like Thimo_3178 f271d32056429ccdc5a35716e6bbd439 165 Pfam PF02635 DsrE/DsrF-like family 62 163 6.8E-11 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein Thimo_3178 f271d32056429ccdc5a35716e6bbd439 165 SUPERFAMILY SSF75169 38 163 1.13E-17 T 14-10-2018 IPR027396 DsrEFH-like Thimo_0805 f3f32ac2d0f472e2882e8a47db9739e7 281 Pfam PF00665 Integrase core domain 118 229 3.6E-23 T 14-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Thimo_0805 f3f32ac2d0f472e2882e8a47db9739e7 281 Gene3D G3DSA:3.30.420.10 113 267 9.6E-16 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_0805 f3f32ac2d0f472e2882e8a47db9739e7 281 Pfam PF13276 HTH-like domain 40 96 1.5E-17 T 14-10-2018 IPR025948 HTH-like domain Thimo_0805 f3f32ac2d0f472e2882e8a47db9739e7 281 SUPERFAMILY SSF53098 116 277 8.73E-50 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2512 ef9a52176a11218884680de50b2a60f8 286 Gene3D G3DSA:3.40.50.1980 183 285 3.2E-36 T 14-10-2018 Thimo_2512 ef9a52176a11218884680de50b2a60f8 286 PRINTS PR00690 Adhesin family signature 50 63 3.7E-5 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_2512 ef9a52176a11218884680de50b2a60f8 286 PRINTS PR00690 Adhesin family signature 182 203 3.7E-5 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_2512 ef9a52176a11218884680de50b2a60f8 286 PRINTS PR00690 Adhesin family signature 233 251 3.7E-5 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Thimo_2512 ef9a52176a11218884680de50b2a60f8 286 Gene3D G3DSA:3.40.50.1980 20 182 4.3E-48 T 14-10-2018 Thimo_2512 ef9a52176a11218884680de50b2a60f8 286 SUPERFAMILY SSF53807 19 284 9.81E-79 T 14-10-2018 Thimo_2512 ef9a52176a11218884680de50b2a60f8 286 Pfam PF01297 Zinc-uptake complex component A periplasmic 22 274 1.7E-59 T 14-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Thimo_3450 13f662e06a2863b39409ecbb78fe6e5e 170 SUPERFAMILY SSF55729 33 158 2.34E-13 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_3450 13f662e06a2863b39409ecbb78fe6e5e 170 Gene3D G3DSA:3.40.630.30 5 166 1.5E-44 T 14-10-2018 Thimo_3450 13f662e06a2863b39409ecbb78fe6e5e 170 Pfam PF13673 Acetyltransferase (GNAT) domain 36 154 1.7E-7 T 14-10-2018 IPR000182 GNAT domain Thimo_1471 47e0e789fbcb50b289393c0b018b1fb6 113 Pfam PF01722 BolA-like protein 12 84 2.6E-28 T 14-10-2018 IPR002634 BolA protein Thimo_1471 47e0e789fbcb50b289393c0b018b1fb6 113 Gene3D G3DSA:3.30.300.90 1 89 3.0E-31 T 14-10-2018 Thimo_1471 47e0e789fbcb50b289393c0b018b1fb6 113 PIRSF PIRSF003113 1 100 1.3E-32 T 14-10-2018 IPR002634 BolA protein Thimo_1471 47e0e789fbcb50b289393c0b018b1fb6 113 SUPERFAMILY SSF82657 2 88 7.06E-28 T 14-10-2018 IPR036065 BolA-like superfamily Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 Gene3D G3DSA:3.40.50.2020 9 304 1.1E-125 T 14-10-2018 Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 6 316 48.581 T 14-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 6 123 2.2E-45 T 14-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 SMART SM01400 6 123 1.2E-72 T 14-10-2018 Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 Gene3D G3DSA:3.40.50.2020 150 292 1.1E-125 T 14-10-2018 Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 Pfam PF14572 Phosphoribosyl synthetase-associated domain 203 315 6.5E-29 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 SUPERFAMILY SSF53271 71 308 7.26E-64 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 131 146 - T 14-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 Thimo_3135 36495f3f3e0958f52398f32f26416ca2 317 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 6 315 7.7E-118 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Thimo_2213 a1557f61471ddabb93527e92a2328ed9 135 TIGRFAM TIGR02945 SUF_assoc: FeS assembly SUF system protein 38 135 2.0E-44 T 14-10-2018 IPR014291 SUF system FeS cluster assembly associated Thimo_2213 a1557f61471ddabb93527e92a2328ed9 135 Pfam PF01883 Iron-sulfur cluster assembly protein 40 109 2.4E-21 T 14-10-2018 IPR002744 MIP18 family-like Thimo_2213 a1557f61471ddabb93527e92a2328ed9 135 SUPERFAMILY SSF117916 37 134 1.31E-31 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Thimo_2213 a1557f61471ddabb93527e92a2328ed9 135 Gene3D G3DSA:3.30.300.130 32 134 2.0E-36 T 14-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Thimo_3686 a3bdbd8aa488a850b77475e20b7018da 184 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 147 1.8E-28 T 14-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Thimo_3686 a3bdbd8aa488a850b77475e20b7018da 184 PIRSF PIRSF004682 1 183 3.5E-55 T 14-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 Thimo_3686 a3bdbd8aa488a850b77475e20b7018da 184 SUPERFAMILY SSF56784 2 179 1.04E-46 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_3686 a3bdbd8aa488a850b77475e20b7018da 184 Pfam PF13242 HAD-hyrolase-like 102 174 1.8E-14 T 14-10-2018 Thimo_3686 a3bdbd8aa488a850b77475e20b7018da 184 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 146 3.9E-42 T 14-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 Thimo_3686 a3bdbd8aa488a850b77475e20b7018da 184 Gene3D G3DSA:3.40.50.1000 4 184 1.5E-52 T 14-10-2018 IPR023214 HAD superfamily Thimo_2318 e808364fbfec8df85835b92e22a35ac3 164 Pfam PF02915 Rubrerythrin 108 151 2.1E-5 T 14-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Thimo_2318 e808364fbfec8df85835b92e22a35ac3 164 Gene3D G3DSA:1.20.1260.10 11 160 3.3E-20 T 14-10-2018 IPR012347 Ferritin-like Thimo_2318 e808364fbfec8df85835b92e22a35ac3 164 SUPERFAMILY SSF47240 17 154 1.76E-18 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_1862 a697dc47e952937c711f681f9a7f6f2b 238 Gene3D G3DSA:3.40.470.10 1 236 2.5E-98 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_1862 a697dc47e952937c711f681f9a7f6f2b 238 SUPERFAMILY SSF52141 3 235 9.81E-59 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_3072 c9ba04c635ab7d9736e26a2bf451de58 402 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 59 130 1.6E-15 T 14-10-2018 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal Thimo_3072 c9ba04c635ab7d9736e26a2bf451de58 402 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 146 308 1.5E-35 T 14-10-2018 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal Thimo_0566 eff11587e83a4eea9db184c604c09813 267 Pfam PF01925 Sulfite exporter TauE/SafE 14 265 4.3E-54 T 14-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Thimo_1459 a994a9bbfc0a2c136170f4b3cd7b2137 274 SMART SM00563 69 180 2.3E-28 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Thimo_1459 a994a9bbfc0a2c136170f4b3cd7b2137 274 SUPERFAMILY SSF69593 39 244 1.1E-26 T 14-10-2018 Thimo_1459 a994a9bbfc0a2c136170f4b3cd7b2137 274 Pfam PF01553 Acyltransferase 68 177 5.7E-18 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Thimo_0885 893634d7797960312582d8f3827f49f6 142 Gene3D G3DSA:2.60.120.460 1 141 4.5E-45 T 14-10-2018 IPR035917 YjbQ-like superfamily Thimo_0885 893634d7797960312582d8f3827f49f6 142 PIRSF PIRSF004681 1 141 3.4E-37 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_0885 893634d7797960312582d8f3827f49f6 142 SUPERFAMILY SSF111038 1 141 3.53E-43 T 14-10-2018 IPR035917 YjbQ-like superfamily Thimo_0885 893634d7797960312582d8f3827f49f6 142 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 102 120 - T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_0885 893634d7797960312582d8f3827f49f6 142 Pfam PF01894 Uncharacterised protein family UPF0047 20 137 2.5E-35 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_0885 893634d7797960312582d8f3827f49f6 142 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 8 141 2.7E-34 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_1049 47bc27babd455bc1367501914032958a 417 Gene3D G3DSA:1.20.81.30 270 381 8.8E-32 T 14-10-2018 Thimo_1049 47bc27babd455bc1367501914032958a 417 Gene3D G3DSA:1.20.81.30 71 185 8.2E-31 T 14-10-2018 Thimo_1049 47bc27babd455bc1367501914032958a 417 Pfam PF00482 Type II secretion system (T2SS), protein F 287 409 3.0E-33 T 14-10-2018 IPR018076 Type II secretion system F domain Thimo_1049 47bc27babd455bc1367501914032958a 417 Pfam PF00482 Type II secretion system (T2SS), protein F 83 206 7.6E-32 T 14-10-2018 IPR018076 Type II secretion system F domain Thimo_1049 47bc27babd455bc1367501914032958a 417 PRINTS PR00812 Bacterial general secretion pathway protein F signature 398 417 4.2E-19 T 14-10-2018 IPR003004 GspF/PilC family Thimo_1049 47bc27babd455bc1367501914032958a 417 PRINTS PR00812 Bacterial general secretion pathway protein F signature 382 396 4.2E-19 T 14-10-2018 IPR003004 GspF/PilC family Thimo_1049 47bc27babd455bc1367501914032958a 417 PRINTS PR00812 Bacterial general secretion pathway protein F signature 178 206 4.2E-19 T 14-10-2018 IPR003004 GspF/PilC family Thimo_1049 47bc27babd455bc1367501914032958a 417 PRINTS PR00812 Bacterial general secretion pathway protein F signature 79 91 4.2E-19 T 14-10-2018 IPR003004 GspF/PilC family Thimo_3234 e150645cda88a4fb4da03decee3636e9 391 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 8 371 1.8E-158 T 14-10-2018 IPR013477 Homocitrate synthase NifV-like GO:0046912|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 Thimo_3234 e150645cda88a4fb4da03decee3636e9 391 Pfam PF00682 HMGL-like 8 265 6.8E-81 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Thimo_3234 e150645cda88a4fb4da03decee3636e9 391 SUPERFAMILY SSF51569 7 282 2.64E-80 T 14-10-2018 Thimo_3234 e150645cda88a4fb4da03decee3636e9 391 Gene3D G3DSA:1.10.238.260 273 382 2.2E-23 T 14-10-2018 Thimo_3234 e150645cda88a4fb4da03decee3636e9 391 Gene3D G3DSA:3.20.20.70 1 270 4.7E-84 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3234 e150645cda88a4fb4da03decee3636e9 391 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 15 31 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_3234 e150645cda88a4fb4da03decee3636e9 391 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 194 207 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Thimo_0792 12a3ca30f24c85fa0807c8040ad1fc0e 121 SUPERFAMILY SSF160719 18 114 4.71E-18 T 14-10-2018 Thimo_0792 12a3ca30f24c85fa0807c8040ad1fc0e 121 Gene3D G3DSA:3.10.450.40 1 117 5.2E-26 T 14-10-2018 Thimo_0792 12a3ca30f24c85fa0807c8040ad1fc0e 121 Pfam PF04965 Gene 25-like lysozyme 22 106 4.1E-14 T 14-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Thimo_3120 bad6235d9923ea24cd3c2e631d228d1c 151 Pfam PF02381 MraZ protein, putative antitoxin-like 2 74 2.1E-16 T 14-10-2018 IPR020603 MraZ domain Thimo_3120 bad6235d9923ea24cd3c2e631d228d1c 151 Pfam PF02381 MraZ protein, putative antitoxin-like 77 133 9.4E-16 T 14-10-2018 IPR020603 MraZ domain Thimo_3120 bad6235d9923ea24cd3c2e631d228d1c 151 Gene3D G3DSA:2.40.330.20 1 143 1.3E-46 T 14-10-2018 IPR038619 MraZ superfamily Thimo_3120 bad6235d9923ea24cd3c2e631d228d1c 151 SUPERFAMILY SSF89447 2 136 1.04E-44 T 14-10-2018 IPR037914 SpoVT-AbrB domain superfamily Thimo_3120 bad6235d9923ea24cd3c2e631d228d1c 151 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 151 50.814 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Thimo_3120 bad6235d9923ea24cd3c2e631d228d1c 151 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 129 2.0E-37 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Thimo_3120 bad6235d9923ea24cd3c2e631d228d1c 151 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 135 9.4E-44 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Thimo_1665 0a3a6830bf4c77fa2dd06097b43e32d8 412 Pfam PF01548 Transposase 10 175 2.6E-18 T 14-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Thimo_1665 0a3a6830bf4c77fa2dd06097b43e32d8 412 Pfam PF02371 Transposase IS116/IS110/IS902 family 276 360 1.5E-10 T 14-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Thimo_1706 15c48f1b19760e5c20c3387e886a166b 77 Pfam PF01455 HupF/HypC family 1 66 8.0E-21 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_1706 15c48f1b19760e5c20c3387e886a166b 77 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 74 2.2E-20 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_1706 15c48f1b19760e5c20c3387e886a166b 77 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 14-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site Thimo_1706 15c48f1b19760e5c20c3387e886a166b 77 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 1.4E-10 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_1706 15c48f1b19760e5c20c3387e886a166b 77 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 40 56 1.4E-10 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_1706 15c48f1b19760e5c20c3387e886a166b 77 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.4E-10 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_1706 15c48f1b19760e5c20c3387e886a166b 77 SUPERFAMILY SSF159127 1 75 1.22E-21 T 14-10-2018 IPR037254 HupF/HypC superfamily Thimo_1706 15c48f1b19760e5c20c3387e886a166b 77 Gene3D G3DSA:2.40.50.970 1 76 4.3E-20 T 14-10-2018 IPR037254 HupF/HypC superfamily Thimo_2158 5d8359dada5f6e161ece797a55656102 372 Gene3D G3DSA:1.10.3720.10 134 362 3.0E-11 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_2158 5d8359dada5f6e161ece797a55656102 372 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 194 366 8.4E-27 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_2158 5d8359dada5f6e161ece797a55656102 372 SUPERFAMILY SSF161098 140 354 4.58E-12 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1690 c54c1d4360ead41cf211590a3c77a3a9 369 Pfam PF01966 HD domain 180 302 4.1E-20 T 14-10-2018 IPR006674 HD domain Thimo_1690 c54c1d4360ead41cf211590a3c77a3a9 369 SMART SM00448 11 126 1.3E-17 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1690 c54c1d4360ead41cf211590a3c77a3a9 369 Pfam PF00072 Response regulator receiver domain 13 125 4.5E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_1690 c54c1d4360ead41cf211590a3c77a3a9 369 SMART SM00471 175 312 1.8E-13 T 14-10-2018 IPR003607 HD/PDEase domain Thimo_1690 c54c1d4360ead41cf211590a3c77a3a9 369 Gene3D G3DSA:3.40.50.2300 3 145 1.7E-29 T 14-10-2018 Thimo_1690 c54c1d4360ead41cf211590a3c77a3a9 369 SUPERFAMILY SSF52172 8 137 3.56E-29 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1690 c54c1d4360ead41cf211590a3c77a3a9 369 Gene3D G3DSA:1.10.3210.10 153 354 3.8E-72 T 14-10-2018 Thimo_1690 c54c1d4360ead41cf211590a3c77a3a9 369 SUPERFAMILY SSF109604 162 342 4.57E-43 T 14-10-2018 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 10 509 44.491 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 88 297 1.0E-75 T 14-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 SUPERFAMILY SSF53649 9 508 4.84E-65 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 Gene3D G3DSA:3.40.1450.10 83 309 5.5E-197 T 14-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 PIRSF PIRSF001492 5 511 2.4E-185 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 11 508 2.4E-188 T 14-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 Pfam PF01676 Metalloenzyme superfamily 11 496 1.9E-68 T 14-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 SUPERFAMILY SSF64158 83 305 3.14E-77 T 14-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Thimo_3374 221717b11757e96c3faebc16e7614c8f 514 Gene3D G3DSA:3.40.720.10 11 508 5.5E-197 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Thimo_0883 6c98c1070d1868aa953f6370be554a96 458 SUPERFAMILY SSF56801 7 455 7.06E-88 T 14-10-2018 Thimo_0883 6c98c1070d1868aa953f6370be554a96 458 Gene3D G3DSA:3.30.300.30 361 457 6.6E-18 T 14-10-2018 Thimo_0883 6c98c1070d1868aa953f6370be554a96 458 Gene3D G3DSA:3.40.50.12780 5 360 7.6E-70 T 14-10-2018 Thimo_0883 6c98c1070d1868aa953f6370be554a96 458 Pfam PF13193 AMP-binding enzyme C-terminal domain 374 444 2.0E-9 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Thimo_0883 6c98c1070d1868aa953f6370be554a96 458 Pfam PF00501 AMP-binding enzyme 8 364 1.6E-42 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Thimo_3408 37a0cf02f7eb5f3f2c89552041c16fab 95 Gene3D G3DSA:1.20.5.1230 1 90 3.9E-6 T 14-10-2018 Thimo_3408 37a0cf02f7eb5f3f2c89552041c16fab 95 SUPERFAMILY SSF58113 8 88 1.28E-5 T 14-10-2018 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 1 672 2.1E-256 T 14-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 217 231 1.1E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 166 183 1.1E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 13 26 1.1E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 50 69 1.1E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 136 154 1.1E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 117 133 1.1E-55 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 Gene3D G3DSA:3.40.30.60 340 483 1.1E-50 T 14-10-2018 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 PIRSF PIRSF005419 1 673 7.0E-235 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 Pfam PF00771 FHIPEP family 7 663 8.5E-263 T 14-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 Gene3D G3DSA:1.10.8.540 484 571 1.4E-24 T 14-10-2018 Thimo_0284 aea23e175de6e9f5a281bd9445d8c698 673 Gene3D G3DSA:1.10.490.80 575 672 2.4E-10 T 14-10-2018 Thimo_0393 5af84d918a14031d6efa1ef3b6271791 96 Gene3D G3DSA:3.40.1620.10 5 48 4.6E-9 T 14-10-2018 Thimo_0393 5af84d918a14031d6efa1ef3b6271791 96 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 57 4.8E-15 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_0393 5af84d918a14031d6efa1ef3b6271791 96 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 46 9.5E-12 T 14-10-2018 Thimo_0393 5af84d918a14031d6efa1ef3b6271791 96 SUPERFAMILY SSF143120 1 74 1.96E-13 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 SUPERFAMILY SSF55811 6 128 7.72E-34 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 Pfam PF00293 NUDIX domain 7 127 2.4E-17 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 Pfam PF02581 Thiamine monophosphate synthase 135 319 9.5E-39 T 14-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 Gene3D G3DSA:3.90.79.10 5 129 1.4E-34 T 14-10-2018 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 TIGRFAM TIGR00586 mutt: mutator mutT protein 7 129 7.2E-29 T 14-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 PRINTS PR00502 NUDIX hydrolase family signature 35 49 6.0E-7 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 PRINTS PR00502 NUDIX hydrolase family signature 49 64 6.0E-7 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 Gene3D G3DSA:3.20.20.70 130 326 2.4E-50 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3667 3871031b9bfa8ccd8942765babea3e51 326 SUPERFAMILY SSF51391 117 325 3.14E-49 T 14-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 14-10-2018 IPR030655 NifH/chlL conserved site Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 4 274 1.0E-137 T 14-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 PIRSF PIRSF000363 2 278 1.6E-124 T 14-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 ProSitePatterns PS00746 NifH/frxC family signature 1. 88 100 - T 14-10-2018 IPR030655 NifH/chlL conserved site Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 4 276 8.1E-143 T 14-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 Hamap MF_00533 Nitrogenase iron protein [nifH]. 3 276 52.649 T 14-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 Gene3D G3DSA:3.40.50.300 2 277 1.1E-73 T 14-10-2018 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 PRINTS PR00091 Nitrogenase component II signature 9 22 8.6E-38 T 14-10-2018 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 PRINTS PR00091 Nitrogenase component II signature 86 100 8.6E-38 T 14-10-2018 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 PRINTS PR00091 Nitrogenase component II signature 31 46 8.6E-38 T 14-10-2018 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 PRINTS PR00091 Nitrogenase component II signature 125 140 8.6E-38 T 14-10-2018 Thimo_3245 a7a3675cce37f0af9555559d84dcf91e 293 SUPERFAMILY SSF52540 7 275 5.34E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0282 036b777a20a492b3c0e68c700386db10 257 Pfam PF01311 Bacterial export proteins, family 1 13 244 2.1E-65 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Thimo_0282 036b777a20a492b3c0e68c700386db10 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 7.4E-26 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Thimo_0282 036b777a20a492b3c0e68c700386db10 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 7.4E-26 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Thimo_0282 036b777a20a492b3c0e68c700386db10 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 7.4E-26 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Thimo_0282 036b777a20a492b3c0e68c700386db10 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 7.4E-26 T 14-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Thimo_0282 036b777a20a492b3c0e68c700386db10 257 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 251 1.0E-67 T 14-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 Thimo_0887 1611e73a1ef85a132c78e9691ad356a1 189 Gene3D G3DSA:3.90.79.10 1 184 2.1E-52 T 14-10-2018 Thimo_0887 1611e73a1ef85a132c78e9691ad356a1 189 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 14 172 1.4E-48 T 14-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 Thimo_0887 1611e73a1ef85a132c78e9691ad356a1 189 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 12 185 30.669 T 14-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 Thimo_0887 1611e73a1ef85a132c78e9691ad356a1 189 Pfam PF00293 NUDIX domain 39 170 9.7E-23 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_0887 1611e73a1ef85a132c78e9691ad356a1 189 SUPERFAMILY SSF55811 12 179 1.19E-42 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_0887 1611e73a1ef85a132c78e9691ad356a1 189 PIRSF PIRSF018427 1 188 4.9E-57 T 14-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 Thimo_2959 6a5bd3f4c0ad78a5928ec166c022e562 204 SMART SM00877 138 203 5.1E-12 T 14-10-2018 IPR000249 Microcompartment protein, bacteria Thimo_2959 6a5bd3f4c0ad78a5928ec166c022e562 204 Gene3D G3DSA:3.30.70.1810 2 103 1.6E-41 T 14-10-2018 Thimo_2959 6a5bd3f4c0ad78a5928ec166c022e562 204 Gene3D G3DSA:3.30.70.1810 104 202 3.3E-35 T 14-10-2018 Thimo_2959 6a5bd3f4c0ad78a5928ec166c022e562 204 SUPERFAMILY SSF143414 138 200 9.55E-9 T 14-10-2018 IPR037233 CcmK-like superfamily Thimo_2959 6a5bd3f4c0ad78a5928ec166c022e562 204 Pfam PF00936 BMC domain 142 198 3.5E-6 T 14-10-2018 IPR000249 Microcompartment protein, bacteria Thimo_1676 0024feb11f4453785731f8febf6d9777 179 Gene3D G3DSA:1.20.120.20 6 125 2.7E-5 T 14-10-2018 Thimo_1676 0024feb11f4453785731f8febf6d9777 179 Pfam PF07295 Zinc-ribbon containing domain 27 171 1.2E-49 T 14-10-2018 IPR009912 Zinc-ribbon containing domain Thimo_0501 067935334c6218cef4f057b9582f59b7 306 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 4 286 1.4E-61 T 14-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Thimo_0501 067935334c6218cef4f057b9582f59b7 306 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 300 99.384 T 14-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Thimo_0501 067935334c6218cef4f057b9582f59b7 306 Pfam PF03186 CobD/Cbib protein 7 278 5.2E-93 T 14-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Thimo_1284 049b36c7cce2f3937652353686d13270 78 SUPERFAMILY SSF143120 4 44 2.75E-10 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_1284 049b36c7cce2f3937652353686d13270 78 Gene3D G3DSA:3.40.1620.10 1 40 1.4E-8 T 14-10-2018 Thimo_1284 049b36c7cce2f3937652353686d13270 78 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 42 9.3E-11 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_1284 049b36c7cce2f3937652353686d13270 78 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 45 2.3E-8 T 14-10-2018 Thimo_3191 8b3fbf6709c4b8750bccce49baf4310f 349 Gene3D G3DSA:3.20.20.70 57 347 3.6E-65 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3191 8b3fbf6709c4b8750bccce49baf4310f 349 SMART SM01133 68 325 1.3E-40 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Thimo_3191 8b3fbf6709c4b8750bccce49baf4310f 349 SUPERFAMILY SSF51569 58 342 1.54E-64 T 14-10-2018 Thimo_3191 8b3fbf6709c4b8750bccce49baf4310f 349 Pfam PF01791 DeoC/LacD family aldolase 69 325 7.4E-64 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Thimo_3075 f1e4701b72d42cad742da309111280a7 214 Gene3D G3DSA:3.40.50.150 12 207 9.1E-16 T 14-10-2018 Thimo_3075 f1e4701b72d42cad742da309111280a7 214 Pfam PF08241 Methyltransferase domain 45 124 2.6E-9 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_3075 f1e4701b72d42cad742da309111280a7 214 SUPERFAMILY SSF53335 14 207 1.1E-16 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3242 458db0519dff852c696fc14a427b9544 70 Gene3D G3DSA:2.40.50.240 2 70 6.6E-21 T 14-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily Thimo_3242 458db0519dff852c696fc14a427b9544 70 SUPERFAMILY SSF159203 3 70 4.97E-20 T 14-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily Thimo_3242 458db0519dff852c696fc14a427b9544 70 Pfam PF06988 NifT/FixU protein 1 66 2.8E-24 T 14-10-2018 IPR009727 NifT/FixU GO:0009399 Thimo_3242 458db0519dff852c696fc14a427b9544 70 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 4 70 1.6E-21 T 14-10-2018 IPR009727 NifT/FixU GO:0009399 Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 10 155 2.8E-46 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 9 160 3.3E-64 T 14-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 Gene3D G3DSA:3.40.50.1450 7 166 8.0E-42 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 SUPERFAMILY SSF53163 8 167 1.49E-47 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 Pfam PF01750 Hydrogenase maturation protease 26 153 9.9E-41 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 9 21 1.5E-34 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 21 32 1.5E-34 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 41 58 1.5E-34 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 73 89 1.5E-34 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_3238 d3bbf620dbff57529719c6d17b706f58 237 PRINTS PR00446 Hydrogen uptake protein signature 62 72 1.5E-34 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Thimo_1007 4685fc30a6cab4133c6233b486612237 246 Gene3D G3DSA:3.40.50.150 16 240 2.3E-34 T 14-10-2018 Thimo_1007 4685fc30a6cab4133c6233b486612237 246 SUPERFAMILY SSF53335 7 225 1.51E-33 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1007 4685fc30a6cab4133c6233b486612237 246 Pfam PF08241 Methyltransferase domain 46 141 4.7E-19 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_2509 033532974f74729b8b3222de73c4c83a 169 Gene3D G3DSA:3.30.1490.190 90 150 1.9E-15 T 14-10-2018 Thimo_2509 033532974f74729b8b3222de73c4c83a 169 Gene3D G3DSA:1.10.10.10 1 89 1.1E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2509 033532974f74729b8b3222de73c4c83a 169 Pfam PF01475 Ferric uptake regulator family 19 132 9.4E-16 T 14-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Thimo_2509 033532974f74729b8b3222de73c4c83a 169 SUPERFAMILY SSF46785 14 143 3.03E-32 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2054 1668247210f6e7827b71d25bceff46f6 454 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 359 451 5.5E-28 T 14-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 203 306 1.3E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 SMART SM00388 84 152 2.0E-16 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 SUPERFAMILY SSF55874 141 310 1.09E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 Pfam PF00512 His Kinase A (phospho-acceptor) domain 86 151 1.3E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 SUPERFAMILY SSF47384 67 152 5.3E-18 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 Gene3D G3DSA:3.30.565.10 157 310 8.9E-41 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 SMART SM00387 198 309 9.1E-31 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 Gene3D G3DSA:1.10.287.130 77 152 4.8E-20 T 14-10-2018 Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 235 249 1.2E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 269 287 1.2E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 253 263 1.2E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_3295 0af2cd6288afd89f8791697a5f9bd2fe 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 293 306 1.2E-13 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Thimo_1923 cad6a8fb5493c7347a744347b90dfa3b 94 SUPERFAMILY SSF54928 2 93 3.49E-34 T 14-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 Thimo_1923 cad6a8fb5493c7347a744347b90dfa3b 94 Gene3D G3DSA:3.30.70.330 1 93 3.2E-32 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Thimo_1923 cad6a8fb5493c7347a744347b90dfa3b 94 SMART SM00360 2 75 4.9E-30 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Thimo_1923 cad6a8fb5493c7347a744347b90dfa3b 94 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 1.0E-25 T 14-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Thimo_0103 1715383ccd578d39b9cf4a82b3a804fa 836 SUPERFAMILY SSF53756 24 829 0.0 T 14-10-2018 Thimo_0103 1715383ccd578d39b9cf4a82b3a804fa 836 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 672 684 - T 14-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Thimo_0103 1715383ccd578d39b9cf4a82b3a804fa 836 Gene3D G3DSA:3.40.50.2000 22 488 4.0E-203 T 14-10-2018 Thimo_0103 1715383ccd578d39b9cf4a82b3a804fa 836 PIRSF PIRSF000460 26 833 9.3E-223 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Thimo_0103 1715383ccd578d39b9cf4a82b3a804fa 836 Pfam PF00343 Carbohydrate phosphorylase 116 827 0.0 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Thimo_0103 1715383ccd578d39b9cf4a82b3a804fa 836 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 29 826 0.0 T 14-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Thimo_0103 1715383ccd578d39b9cf4a82b3a804fa 836 Gene3D G3DSA:3.40.50.2000 489 812 2.8E-137 T 14-10-2018 Thimo_2034 84110891826e49f47692745de15ec5df 262 Pfam PF07592 Rhodopirellula transposase DDE domain 95 262 5.3E-73 T 14-10-2018 IPR011518 Transposase, Rhodopirellula-type Thimo_3560 c82dc94c52f53d0eb3b07ce53aaee79d 199 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 8 195 4.1E-44 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_3560 c82dc94c52f53d0eb3b07ce53aaee79d 199 Gene3D G3DSA:3.40.50.1240 3 198 3.4E-44 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_3560 c82dc94c52f53d0eb3b07ce53aaee79d 199 PIRSF PIRSF000709 3 198 2.1E-9 T 14-10-2018 Thimo_3560 c82dc94c52f53d0eb3b07ce53aaee79d 199 SUPERFAMILY SSF53254 6 195 4.28E-44 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_3560 c82dc94c52f53d0eb3b07ce53aaee79d 199 SMART SM00855 5 156 5.8E-8 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_2552 48ccd7955f4201a2e110c9afd822b0ca 304 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 218 294 1.4E-16 T 14-10-2018 IPR006260 TonB/TolA, C-terminal Thimo_2552 48ccd7955f4201a2e110c9afd822b0ca 304 SUPERFAMILY SSF74653 128 294 3.92E-22 T 14-10-2018 Thimo_2552 48ccd7955f4201a2e110c9afd822b0ca 304 Gene3D G3DSA:3.30.1150.10 172 294 2.9E-23 T 14-10-2018 Thimo_2552 48ccd7955f4201a2e110c9afd822b0ca 304 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 216 281 1.8E-16 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 Thimo_3498 5af8b22d6afc09d2e5e30b477bf320c4 244 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 169 240 8.3E-19 T 14-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Thimo_3498 5af8b22d6afc09d2e5e30b477bf320c4 244 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 3.4E-35 T 14-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Thimo_3498 5af8b22d6afc09d2e5e30b477bf320c4 244 Pfam PF00460 Flagella basal body rod protein 5 35 8.7E-7 T 14-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Thimo_3498 5af8b22d6afc09d2e5e30b477bf320c4 244 SUPERFAMILY SSF117143 77 202 5.23E-19 T 14-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Thimo_3498 5af8b22d6afc09d2e5e30b477bf320c4 244 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 221 7.3E-54 T 14-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 Thimo_3101 20dd1512d3e5e71ebfae4ec0332733f3 421 Gene3D G3DSA:1.20.1250.20 17 407 6.6E-21 T 14-10-2018 Thimo_3101 20dd1512d3e5e71ebfae4ec0332733f3 421 SUPERFAMILY SSF103473 18 413 1.31E-33 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_3101 20dd1512d3e5e71ebfae4ec0332733f3 421 Pfam PF07690 Major Facilitator Superfamily 37 372 2.5E-19 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Thimo_2220 9d58786c2db361960fe1b9cbc18bd8a3 298 Pfam PF02666 Phosphatidylserine decarboxylase 71 289 2.4E-58 T 14-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Thimo_2220 9d58786c2db361960fe1b9cbc18bd8a3 298 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 57 289 2.0E-72 T 14-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Thimo_2220 9d58786c2db361960fe1b9cbc18bd8a3 298 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 18 292 44.15 T 14-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 Thimo_0593 751f4b08353851295357e8b5a21458ee 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 103 114 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0593 751f4b08353851295357e8b5a21458ee 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 64 75 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0593 751f4b08353851295357e8b5a21458ee 163 SUPERFAMILY SSF54862 37 146 2.34E-24 T 14-10-2018 Thimo_0593 751f4b08353851295357e8b5a21458ee 163 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 20 141 1.4E-43 T 14-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0593 751f4b08353851295357e8b5a21458ee 163 Gene3D G3DSA:3.30.70.3270 37 162 1.4E-36 T 14-10-2018 Thimo_0593 751f4b08353851295357e8b5a21458ee 163 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 11 150 27.28 T 14-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0593 751f4b08353851295357e8b5a21458ee 163 Pfam PF12838 4Fe-4S dicluster domain 63 116 1.1E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_3399 baa163b74fba04f4afc8ab5fdcd8d9e7 232 Pfam PF13548 Domain of unknown function (DUF4126) 8 180 4.3E-55 T 14-10-2018 IPR025196 Domain of unknown function DUF4126 Thimo_0884 3637a2666e7c45142c4a5203d51e6742 435 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 153 431 2.0E-57 T 14-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0884 3637a2666e7c45142c4a5203d51e6742 435 SUPERFAMILY SSF51649 148 429 1.27E-87 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0884 3637a2666e7c45142c4a5203d51e6742 435 Gene3D G3DSA:3.30.70.150 1 147 1.3E-37 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0884 3637a2666e7c45142c4a5203d51e6742 435 Gene3D G3DSA:3.20.20.110 148 434 3.8E-98 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0884 3637a2666e7c45142c4a5203d51e6742 435 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 11 143 9.4E-5 T 14-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0884 3637a2666e7c45142c4a5203d51e6742 435 SUPERFAMILY SSF54966 5 147 3.93E-41 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_1674 eac05816415e85365c0e64dd97e91cd5 378 Pfam PF12698 ABC-2 family transporter protein 30 369 1.3E-36 T 14-10-2018 Thimo_0951 200311ba95610e30069ed12257a772b4 193 Gene3D G3DSA:3.30.70.20 3 193 1.0E-54 T 14-10-2018 Thimo_0951 200311ba95610e30069ed12257a772b4 193 SUPERFAMILY SSF54862 21 187 2.83E-45 T 14-10-2018 Thimo_0951 200311ba95610e30069ed12257a772b4 193 Pfam PF13247 4Fe-4S dicluster domain 43 153 6.9E-18 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_2208 97a2a375fd18f1788d59b5e05e1ca3d6 592 Pfam PF07556 Protein of unknown function (DUF1538) 76 298 1.1E-54 T 14-10-2018 IPR011435 Protein of unknown function DUF1538 Thimo_2208 97a2a375fd18f1788d59b5e05e1ca3d6 592 Pfam PF07556 Protein of unknown function (DUF1538) 345 566 1.1E-62 T 14-10-2018 IPR011435 Protein of unknown function DUF1538 Thimo_1005 7f9fe171ac7f6333729b15ef1b9aae4b 270 Pfam PF13469 Sulfotransferase family 21 204 3.0E-26 T 14-10-2018 Thimo_1005 7f9fe171ac7f6333729b15ef1b9aae4b 270 SUPERFAMILY SSF52540 19 265 1.96E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1005 7f9fe171ac7f6333729b15ef1b9aae4b 270 Gene3D G3DSA:3.40.50.300 9 270 4.3E-42 T 14-10-2018 Thimo_2932 22e1d93c26615cf840f2e948eb4fd853 195 Pfam PF14316 Domain of unknown function (DUF4381) 32 177 5.6E-42 T 14-10-2018 IPR025489 Protein of unknown function (DUF4381 Thimo_1492 4f78ce4957e3d30923f4d03ca670fcac 356 Gene3D G3DSA:1.10.132.50 8 332 5.4E-26 T 14-10-2018 Thimo_1492 4f78ce4957e3d30923f4d03ca670fcac 356 Gene3D G3DSA:1.20.1690.10 187 299 5.4E-26 T 14-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1492 4f78ce4957e3d30923f4d03ca670fcac 356 Pfam PF01992 ATP synthase (C/AC39) subunit 10 334 1.2E-45 T 14-10-2018 IPR002843 ATPase, V0 complex, c/d subunit Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1492 4f78ce4957e3d30923f4d03ca670fcac 356 SUPERFAMILY SSF103486 8 334 2.48E-26 T 14-10-2018 IPR036079 V-type ATP synthase subunit C-like Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1492 4f78ce4957e3d30923f4d03ca670fcac 356 Gene3D G3DSA:1.20.1690.10 82 186 5.4E-26 T 14-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_0110 614cbb74a3dd07ba019b73256770d057 504 Pfam PF01435 Peptidase family M48 86 264 1.1E-28 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Thimo_0110 614cbb74a3dd07ba019b73256770d057 504 Gene3D G3DSA:3.30.2010.10 90 156 2.4E-6 T 14-10-2018 Thimo_0110 614cbb74a3dd07ba019b73256770d057 504 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 4 493 34.264 T 14-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 Thimo_0110 614cbb74a3dd07ba019b73256770d057 504 Gene3D G3DSA:1.25.40.10 258 497 5.6E-16 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_0110 614cbb74a3dd07ba019b73256770d057 504 Pfam PF14559 Tetratricopeptide repeat 364 413 3.1E-7 T 14-10-2018 Thimo_0110 614cbb74a3dd07ba019b73256770d057 504 SUPERFAMILY SSF48452 293 464 4.64E-14 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1855 0c41bf1d666b12f9afa2fa7d7d3211bb 116 SMART SM00530 10 67 6.7E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_1855 0c41bf1d666b12f9afa2fa7d7d3211bb 116 SUPERFAMILY SSF47413 2 73 9.57E-13 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_1855 0c41bf1d666b12f9afa2fa7d7d3211bb 116 Pfam PF01381 Helix-turn-helix 11 67 1.5E-11 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_1855 0c41bf1d666b12f9afa2fa7d7d3211bb 116 Gene3D G3DSA:1.10.260.40 7 109 1.8E-15 T 14-10-2018 Thimo_3362 325326137a3d7ffb4f07275ee51e89e6 262 Pfam PF03167 Uracil DNA glycosylase superfamily 98 246 3.5E-48 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_3362 325326137a3d7ffb4f07275ee51e89e6 262 SUPERFAMILY SSF52141 73 253 1.73E-66 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_3362 325326137a3d7ffb4f07275ee51e89e6 262 SMART SM00987 98 246 5.3E-43 T 14-10-2018 Thimo_3362 325326137a3d7ffb4f07275ee51e89e6 262 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 84 252 8.2E-65 T 14-10-2018 IPR005273 Uracil-DNA glycosylase family 4 Thimo_3362 325326137a3d7ffb4f07275ee51e89e6 262 Gene3D G3DSA:3.40.470.10 73 257 6.4E-74 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_3362 325326137a3d7ffb4f07275ee51e89e6 262 SMART SM00986 98 246 5.3E-43 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Thimo_0594 03ed42bf5878b519dc5ee1b8ba15f0af 205 Gene3D G3DSA:1.20.120.1200 4 166 2.1E-44 T 14-10-2018 Thimo_0594 03ed42bf5878b519dc5ee1b8ba15f0af 205 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 20 164 5.6E-37 T 14-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2601 e8674ba6d60f81d5f9fe79de798de904 1331 Pfam PF13502 AsmA-like C-terminal region 1042 1285 4.2E-49 T 14-10-2018 IPR032712 AsmA-like, C-terminal Thimo_2601 e8674ba6d60f81d5f9fe79de798de904 1331 Pfam PF13116 Protein of unknown function 522 799 1.5E-48 T 14-10-2018 IPR025263 Domain of unknown function DUF3971 Thimo_2601 e8674ba6d60f81d5f9fe79de798de904 1331 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 9 1289 1.1E-193 T 14-10-2018 IPR011836 Conserved hypothetical protein CHP02099 Thimo_0238 6a85dcc8a92fc310615cb58bfa481365 466 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 463 3.9E-196 T 14-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Thimo_0238 6a85dcc8a92fc310615cb58bfa481365 466 PIRSF PIRSF000204 1 466 4.7E-211 T 14-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 Thimo_0238 6a85dcc8a92fc310615cb58bfa481365 466 SUPERFAMILY SSF52467 297 466 1.87E-75 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_0238 6a85dcc8a92fc310615cb58bfa481365 466 Gene3D G3DSA:3.40.50.1220 290 466 5.4E-84 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 SUPERFAMILY SSF56770 47 310 2.35E-81 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 62 208 2.7E-30 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 4 320 2.3E-124 T 14-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 228 307 5.1E-31 T 14-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PIRSF PIRSF000310 5 356 1.5E-133 T 14-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 Gene3D G3DSA:4.10.480.10 230 342 2.8E-37 T 14-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 39 1.1E-5 T 14-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 70 94 9.4E-72 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 189 212 9.4E-72 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 47 69 9.4E-72 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 257 283 9.4E-72 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 285 298 9.4E-72 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 215 232 9.4E-72 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 233 251 9.4E-72 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 160 184 9.4E-72 T 14-10-2018 Thimo_3343 fd189ae3d38fffbb0ab43ead98ca2c3d 365 Gene3D G3DSA:3.40.50.700 49 227 6.5E-68 T 14-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Thimo_1528 fcd7523c0640c6fdafa168cc74689c4a 292 Pfam PF01841 Transglutaminase-like superfamily 147 237 4.8E-20 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_1528 fcd7523c0640c6fdafa168cc74689c4a 292 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 5 83 2.6E-20 T 14-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal Thimo_1528 fcd7523c0640c6fdafa168cc74689c4a 292 SMART SM00460 174 239 3.7E-20 T 14-10-2018 IPR002931 Transglutaminase-like Thimo_1528 fcd7523c0640c6fdafa168cc74689c4a 292 Gene3D G3DSA:3.10.620.30 102 272 5.6E-31 T 14-10-2018 Thimo_1528 fcd7523c0640c6fdafa168cc74689c4a 292 SUPERFAMILY SSF54001 85 264 6.48E-38 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Thimo_0635 9a3cceed0dfe8c73336ed91b332ceae7 385 Pfam PF02687 FtsX-like permease family 290 376 4.9E-8 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_3226 dc8a0c6c4d736d5ac0fef4255d7405e3 86 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 4 63 3.9E-11 T 14-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system Thimo_3645 56293c578075b1acd7e32e68e22d602c 161 SUPERFAMILY SSF53146 21 138 4.19E-29 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3645 56293c578075b1acd7e32e68e22d602c 161 Gene3D G3DSA:3.30.420.130 19 140 4.0E-31 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Thimo_3645 56293c578075b1acd7e32e68e22d602c 161 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 33 124 1.3E-18 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Thimo_0675 d5b5d4bc2b6df7665bdd70b2bc336a68 492 Pfam PF05872 Bacterial protein of unknown function (DUF853) 8 491 1.1E-222 T 14-10-2018 IPR033186 Helicase HerA-like C-terminal Thimo_0675 d5b5d4bc2b6df7665bdd70b2bc336a68 492 Gene3D G3DSA:3.40.50.300 8 97 1.7E-10 T 14-10-2018 Thimo_0675 d5b5d4bc2b6df7665bdd70b2bc336a68 492 Gene3D G3DSA:3.40.50.300 198 368 1.6E-19 T 14-10-2018 Thimo_0675 d5b5d4bc2b6df7665bdd70b2bc336a68 492 SUPERFAMILY SSF52540 9 372 8.61E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3697 c246032c84fb7aabb0bed7cafb4688c6 364 Pfam PF11202 Phosphoribosyl transferase (PRTase) 12 260 8.0E-93 T 14-10-2018 IPR011215 Phosphoribosyl transferase Thimo_3697 c246032c84fb7aabb0bed7cafb4688c6 364 PIRSF PIRSF020979 5 364 9.0E-98 T 14-10-2018 IPR011215 Phosphoribosyl transferase Thimo_3697 c246032c84fb7aabb0bed7cafb4688c6 364 Pfam PF15608 PELOTA RNA binding domain 284 361 1.2E-28 T 14-10-2018 IPR028157 PELOTA RNA-binding domain Thimo_3587 a603a82a56939e3a251bbe0e93fde28b 628 SUPERFAMILY SSF53448 30 162 2.92E-5 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3587 a603a82a56939e3a251bbe0e93fde28b 628 SMART SM00729 269 474 0.0053 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_3587 a603a82a56939e3a251bbe0e93fde28b 628 Gene3D G3DSA:3.90.550.10 29 189 3.3E-5 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3587 a603a82a56939e3a251bbe0e93fde28b 628 SUPERFAMILY SSF102114 266 587 1.96E-38 T 14-10-2018 Thimo_3587 a603a82a56939e3a251bbe0e93fde28b 628 Gene3D G3DSA:3.20.20.70 268 544 1.9E-30 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3587 a603a82a56939e3a251bbe0e93fde28b 628 Pfam PF04055 Radical SAM superfamily 274 429 8.1E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_2962 b1441e44c1ab8b0050e96f5096fa40bf 607 Pfam PF00664 ABC transporter transmembrane region 37 308 6.2E-35 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Thimo_2962 b1441e44c1ab8b0050e96f5096fa40bf 607 Gene3D G3DSA:3.40.50.300 347 599 9.0E-94 T 14-10-2018 Thimo_2962 b1441e44c1ab8b0050e96f5096fa40bf 607 SMART SM00382 380 560 2.1E-17 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2962 b1441e44c1ab8b0050e96f5096fa40bf 607 Pfam PF00005 ABC transporter 371 520 1.2E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2962 b1441e44c1ab8b0050e96f5096fa40bf 607 SUPERFAMILY SSF90123 22 343 1.31E-60 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_2962 b1441e44c1ab8b0050e96f5096fa40bf 607 SUPERFAMILY SSF52540 345 591 7.64E-91 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2962 b1441e44c1ab8b0050e96f5096fa40bf 607 Gene3D G3DSA:1.20.1560.10 27 344 1.4E-107 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Thimo_2962 b1441e44c1ab8b0050e96f5096fa40bf 607 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 4 177 16.857 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 8 177 1.9E-49 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 177 2.4E-44 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 SUPERFAMILY SSF47928 5 107 2.35E-23 T 14-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 Gene3D G3DSA:1.10.520.20 3 107 6.1E-30 T 14-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 87 101 1.6E-23 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 76 87 1.6E-23 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 137 152 1.6E-23 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 152 170 1.6E-23 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_1168 c27e68e13309033c61f191635f3d4be1 177 PRINTS PR00125 ATP synthase delta subunit signature 8 27 1.6E-23 T 14-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Thimo_0669 96f327fdd74f49f873bc94182709769e 338 SUPERFAMILY SSF52540 121 301 2.85E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0669 96f327fdd74f49f873bc94182709769e 338 Gene3D G3DSA:3.40.50.300 119 324 6.7E-72 T 14-10-2018 Thimo_0669 96f327fdd74f49f873bc94182709769e 338 Pfam PF02562 PhoH-like protein 121 324 2.3E-91 T 14-10-2018 IPR003714 PhoH-like protein GO:0005524 Thimo_2168 9826ee79102bebd431c186abe74abbf4 131 SUPERFAMILY SSF82784 6 128 1.57E-19 T 14-10-2018 IPR036102 OsmC/Ohr superfamily Thimo_2168 9826ee79102bebd431c186abe74abbf4 131 Gene3D G3DSA:3.30.300.20 5 129 2.4E-13 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_2168 9826ee79102bebd431c186abe74abbf4 131 Pfam PF02566 OsmC-like protein 34 126 9.4E-11 T 14-10-2018 IPR003718 OsmC/Ohr family Thimo_0316 ca66dfca979621c75efe70e28bacb873 336 TIGRFAM TIGR02580 cas_RAMP_Cmr4: CRISPR type III-B/RAMP module RAMP protein Cmr4 22 322 9.7E-51 T 14-10-2018 IPR013410 CRISPR-associated RAMP Cmr4 Thimo_0316 ca66dfca979621c75efe70e28bacb873 336 Pfam PF03787 RAMP superfamily 26 322 1.7E-20 T 14-10-2018 IPR005537 CRISPR type III-associated RAMP protein Thimo_0744 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 SUPERFAMILY SSF53271 3 201 1.17E-49 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_0744 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 Gene3D G3DSA:3.40.50.2020 1 213 6.3E-76 T 14-10-2018 Thimo_0744 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 219 34.491 T 14-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_0744 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 11 187 3.5E-62 T 14-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Thimo_0744 f1ebdf2dd6ea3b60035dc33fdf7d972a 219 Pfam PF00156 Phosphoribosyl transferase domain 49 167 3.8E-15 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Thimo_0855 9ad1d720ab3b23739afa730a75ef6634 164 Pfam PF03729 Short repeat of unknown function (DUF308) 6 73 2.8E-5 T 14-10-2018 IPR005325 Protein of unknown function DUF308, membrane Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 Gene3D G3DSA:3.10.290.10 1 54 4.3E-19 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 SMART SM00363 1 57 1.9E-4 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 Pfam PF00849 RNA pseudouridylate synthase 67 196 8.6E-18 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 105 119 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 SUPERFAMILY SSF55174 1 94 4.71E-12 T 14-10-2018 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 Pfam PF01479 S4 domain 1 44 2.7E-10 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 Gene3D G3DSA:3.30.70.1560 129 219 3.9E-51 T 14-10-2018 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 71 231 3.4E-54 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 Gene3D G3DSA:3.30.70.580 68 228 3.9E-51 T 14-10-2018 Thimo_2077 0a401efb4eb3d903c636542d0eebb5cf 284 SUPERFAMILY SSF55120 65 235 9.87E-44 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Thimo_2508 efe6f98af73469db083fbe4a9ca4e503 220 Pfam PF10986 Protein of unknown function (DUF2796) 41 216 9.8E-56 T 14-10-2018 IPR021253 Protein of unknown function DUF2796 Thimo_1223 a3b39e8d30888b119ff78fada37b08a3 327 SUPERFAMILY SSF51569 7 272 9.71E-39 T 14-10-2018 Thimo_1223 a3b39e8d30888b119ff78fada37b08a3 327 Gene3D G3DSA:3.20.20.70 13 315 2.8E-74 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1223 a3b39e8d30888b119ff78fada37b08a3 327 Pfam PF00682 HMGL-like 14 256 3.1E-24 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 SUPERFAMILY SSF56553 55 179 6.41E-38 T 14-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 Gene3D G3DSA:1.10.150.20 250 334 2.1E-36 T 14-10-2018 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 26 321 2.0E-101 T 14-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 322 33.699 T 14-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 Gene3D G3DSA:3.30.1360.10 23 228 1.8E-78 T 14-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 256 313 8.8E-23 T 14-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 31 229 8.0E-22 T 14-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 Gene3D G3DSA:2.170.120.12 55 178 1.8E-78 T 14-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 SUPERFAMILY SSF55257 10 232 4.51E-26 T 14-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 SUPERFAMILY SSF47789 256 331 1.44E-25 T 14-10-2018 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 64 157 2.8E-21 T 14-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 261 331 1.0E-31 T 14-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_2834 286aa67914837a96d95b19abd7a5ad7a 337 SMART SM00662 25 235 2.8E-89 T 14-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 Pfam PF04055 Radical SAM superfamily 54 201 7.0E-14 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 Gene3D G3DSA:3.20.20.70 8 318 1.1E-125 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 SUPERFAMILY SSF102114 9 314 1.02E-91 T 14-10-2018 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 PIRSF PIRSF001619 1 322 4.4E-128 T 14-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 TIGRFAM TIGR00433 bioB: biotin synthase 19 314 8.3E-122 T 14-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 Hamap MF_01694 Biotin synthase [bioB]. 9 317 42.829 T 14-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 SMART SM00729 47 259 2.2E-34 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 SMART SM00876 224 316 2.3E-39 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Thimo_3031 46a1ee134d0edb621b88fd6c8a5b6c02 339 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 224 314 1.0E-17 T 14-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 Pfam PF00376 MerR family regulatory protein 5 42 3.9E-16 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 Pfam PF09278 MerR, DNA binding 47 111 4.3E-22 T 14-10-2018 IPR015358 Transcription regulator MerR, DNA binding Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 1.0E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 1.0E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 1.0E-13 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 Gene3D G3DSA:1.10.1660.10 1 129 2.2E-38 T 14-10-2018 Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 SMART SM00422 4 73 2.2E-32 T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 29 - T 14-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Thimo_3391 9abbe89001f2a43053e5cb26063e3361 136 SUPERFAMILY SSF46955 4 128 2.31E-37 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Thimo_1578 17f88308e4b4ad8f451fe32899909e20 365 SUPERFAMILY SSF52317 26 339 1.71E-64 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1578 17f88308e4b4ad8f451fe32899909e20 365 Gene3D G3DSA:3.40.50.880 1 345 1.8E-92 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1578 17f88308e4b4ad8f451fe32899909e20 365 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 43 263 1.0E-91 T 14-10-2018 Thimo_1578 17f88308e4b4ad8f451fe32899909e20 365 Pfam PF04204 Homoserine O-succinyltransferase 10 342 2.9E-86 T 14-10-2018 IPR033752 MetA family Thimo_1578 17f88308e4b4ad8f451fe32899909e20 365 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 39 345 35.914 T 14-10-2018 IPR033752 MetA family Thimo_2115 fc2cf9838227d91376a98e379712aa2b 232 SMART SM00862 149 225 5.1E-14 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2115 fc2cf9838227d91376a98e379712aa2b 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 2.4E-15 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_2115 fc2cf9838227d91376a98e379712aa2b 232 Gene3D G3DSA:1.10.10.10 132 228 2.9E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2115 fc2cf9838227d91376a98e379712aa2b 232 SUPERFAMILY SSF46894 138 226 1.45E-15 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_2115 fc2cf9838227d91376a98e379712aa2b 232 Gene3D G3DSA:3.40.50.2300 2 128 1.2E-12 T 14-10-2018 Thimo_2115 fc2cf9838227d91376a98e379712aa2b 232 SMART SM00448 5 115 2.9E-4 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2115 fc2cf9838227d91376a98e379712aa2b 232 Pfam PF00072 Response regulator receiver domain 7 115 3.7E-8 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2115 fc2cf9838227d91376a98e379712aa2b 232 SUPERFAMILY SSF52172 6 148 1.17E-15 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0569 32d2f5e26cf01ae5e918ffcec75b66b8 485 SUPERFAMILY SSF51905 2 193 8.24E-19 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_0569 32d2f5e26cf01ae5e918ffcec75b66b8 485 Gene3D G3DSA:3.50.50.100 1 478 6.5E-98 T 14-10-2018 Thimo_0569 32d2f5e26cf01ae5e918ffcec75b66b8 485 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 316 3.9E-9 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 PIRSF PIRSF003161 3 334 6.0E-99 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 SUPERFAMILY SSF48029 119 327 1.7E-60 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 38 64 6.2E-55 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 229 249 6.2E-55 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 251 271 6.2E-55 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 198 223 6.2E-55 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 9 25 6.2E-55 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 275 301 6.2E-55 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 PRINTS PR00954 Flagellar motor switch protein FliG signature 117 140 6.2E-55 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 8 331 1.3E-86 T 14-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 Pfam PF01706 FliG C-terminal domain 220 327 4.6E-36 T 14-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 Pfam PF14842 FliG N-terminal domain 9 105 2.5E-24 T 14-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 Pfam PF14841 FliG middle domain 119 189 1.4E-22 T 14-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 SUPERFAMILY SSF48029 10 104 1.23E-15 T 14-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 Gene3D G3DSA:1.10.220.30 4 98 5.2E-17 T 14-10-2018 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 Gene3D G3DSA:1.10.220.30 99 192 1.9E-23 T 14-10-2018 Thimo_0271 759c2627714cd5ea551f664bc8072bf1 334 Gene3D G3DSA:1.10.220.30 198 334 6.1E-41 T 14-10-2018 Thimo_0695 1d72ef7d54ea32be2ad8fabd5dfae594 213 Gene3D G3DSA:3.40.50.410 7 175 4.5E-19 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0695 1d72ef7d54ea32be2ad8fabd5dfae594 213 SUPERFAMILY SSF53300 2 173 3.66E-20 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0695 1d72ef7d54ea32be2ad8fabd5dfae594 213 PIRSF PIRSF020634 1 211 8.7E-67 T 14-10-2018 IPR011392 Tellurite resistance, TerY Thimo_0695 1d72ef7d54ea32be2ad8fabd5dfae594 213 SMART SM00327 3 178 5.9E-10 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0695 1d72ef7d54ea32be2ad8fabd5dfae594 213 Pfam PF00092 von Willebrand factor type A domain 6 160 5.6E-10 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_3181 5836b9861a206b729ca5afe8623fdbf4 221 SUPERFAMILY SSF161098 10 219 1.02E-44 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_3181 5836b9861a206b729ca5afe8623fdbf4 221 Gene3D G3DSA:1.10.3720.10 8 220 1.9E-46 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_3181 5836b9861a206b729ca5afe8623fdbf4 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 191 1.7E-17 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_0058 11717a7e648b28dad6730fad50b3d353 220 Gene3D G3DSA:2.30.130.40 8 122 5.2E-32 T 14-10-2018 Thimo_0058 11717a7e648b28dad6730fad50b3d353 220 Gene3D G3DSA:1.20.58.1480 164 208 1.3E-5 T 14-10-2018 Thimo_0058 11717a7e648b28dad6730fad50b3d353 220 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 17 205 2.0E-28 T 14-10-2018 IPR003111 Lon, substrate-binding domain Thimo_0058 11717a7e648b28dad6730fad50b3d353 220 SUPERFAMILY SSF88697 16 205 2.41E-47 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_0058 11717a7e648b28dad6730fad50b3d353 220 SMART SM00464 16 207 1.4E-21 T 14-10-2018 IPR003111 Lon, substrate-binding domain Thimo_2665 557f579d9c8141a35c2575d56ab7a382 762 Gene3D G3DSA:3.40.50.300 476 747 1.1E-68 T 14-10-2018 Thimo_2665 557f579d9c8141a35c2575d56ab7a382 762 Pfam PF02706 Chain length determinant protein 33 125 3.6E-11 T 14-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 Thimo_2665 557f579d9c8141a35c2575d56ab7a382 762 Pfam PF13807 G-rich domain on putative tyrosine kinase 409 479 8.7E-16 T 14-10-2018 IPR032807 Tyrosine kinase, G-rich domain Thimo_2665 557f579d9c8141a35c2575d56ab7a382 762 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 536 736 1.3E-44 T 14-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 Thimo_2665 557f579d9c8141a35c2575d56ab7a382 762 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 557 693 1.3E-6 T 14-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Thimo_2665 557f579d9c8141a35c2575d56ab7a382 762 SUPERFAMILY SSF52540 554 744 7.92E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 Gene3D G3DSA:3.90.226.10 189 363 2.6E-96 T 14-10-2018 Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 Pfam PF03572 Peptidase family S41 200 365 5.1E-56 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 Pfam PF13180 PDZ domain 102 175 2.1E-12 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 SMART SM00228 102 173 2.9E-18 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 SMART SM00245 174 366 8.0E-69 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 Gene3D G3DSA:2.30.42.10 102 188 2.6E-96 T 14-10-2018 Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 54 371 2.2E-104 T 14-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 Gene3D G3DSA:3.30.750.44 48 341 2.6E-96 T 14-10-2018 Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 SUPERFAMILY SSF52096 37 367 2.82E-81 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_3669 51302bff3edb979ec1ae919533ecab6c 435 SUPERFAMILY SSF50156 92 175 3.06E-20 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_3612 a7c19575e974426448bf4c8b201c88de 441 SUPERFAMILY SSF56436 216 441 9.18E-64 T 14-10-2018 IPR016187 C-type lectin fold Thimo_3612 a7c19575e974426448bf4c8b201c88de 441 Pfam PF03781 Sulfatase-modifying factor enzyme 1 217 439 4.4E-54 T 14-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Thimo_3612 a7c19575e974426448bf4c8b201c88de 441 Gene3D G3DSA:3.90.1580.10 215 441 6.5E-62 T 14-10-2018 Thimo_1181 c0dbff35c214d49e223559772883295d 215 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 53 215 3.1E-45 T 14-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Thimo_1181 c0dbff35c214d49e223559772883295d 215 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 14 215 30.504 T 14-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Thimo_1181 c0dbff35c214d49e223559772883295d 215 SUPERFAMILY SSF47240 48 130 1.07E-16 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_3479 f929c5f72d3fd3d4b56b6208e951a84e 457 Gene3D G3DSA:2.20.200.10 106 343 1.1E-81 T 14-10-2018 Thimo_3479 f929c5f72d3fd3d4b56b6208e951a84e 457 Gene3D G3DSA:1.20.1600.10 63 454 1.1E-81 T 14-10-2018 Thimo_3479 f929c5f72d3fd3d4b56b6208e951a84e 457 SUPERFAMILY SSF56954 11 454 1.96E-75 T 14-10-2018 Thimo_3479 f929c5f72d3fd3d4b56b6208e951a84e 457 Pfam PF02321 Outer membrane efflux protein 267 452 1.4E-21 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Thimo_3479 f929c5f72d3fd3d4b56b6208e951a84e 457 Pfam PF02321 Outer membrane efflux protein 69 247 3.8E-24 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Thimo_3549 8e8b2ba639b17e53987ea1bb75585dda 753 SUPERFAMILY SSF52151 7 267 2.88E-23 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_3549 8e8b2ba639b17e53987ea1bb75585dda 753 Pfam PF01734 Patatin-like phospholipase 9 241 6.9E-16 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Thimo_3549 8e8b2ba639b17e53987ea1bb75585dda 753 Gene3D G3DSA:3.40.1090.10 19 262 2.6E-8 T 14-10-2018 Thimo_3549 8e8b2ba639b17e53987ea1bb75585dda 753 Pfam PF11856 Protein of unknown function (DUF3376) 517 577 5.5E-8 T 14-10-2018 IPR024282 Domain of unknown function DUF3376 Thimo_1997 f5ebf01ee56ba1fd27f6908209c4776d 349 SUPERFAMILY SSF53850 96 321 9.42E-11 T 14-10-2018 Thimo_1997 f5ebf01ee56ba1fd27f6908209c4776d 349 Pfam PF13343 Bacterial extracellular solute-binding protein 88 321 6.7E-28 T 14-10-2018 Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 3.2E-10 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 3.2E-10 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 216 230 3.2E-10 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 Pfam PF12697 Alpha/beta hydrolase family 28 263 6.4E-21 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 PRINTS PR00412 Epoxide hydrolase signature 247 269 1.8E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 PRINTS PR00412 Epoxide hydrolase signature 32 50 1.8E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 PRINTS PR00412 Epoxide hydrolase signature 95 108 1.8E-5 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 Gene3D G3DSA:3.40.50.1820 4 274 5.9E-55 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0365 2fd72c3e354c3a571a09f6c10013f216 276 SUPERFAMILY SSF53474 13 271 5.94E-57 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2088 e96490522b3da13b8bc68455e9b48b8e 316 Pfam PF03547 Membrane transport protein 162 305 2.7E-10 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Thimo_1936 17aba1f89b019671056154d8e1a9fbc2 374 Gene3D G3DSA:3.40.640.10 23 280 2.0E-104 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_1936 17aba1f89b019671056154d8e1a9fbc2 374 Gene3D G3DSA:3.90.1150.10 9 362 2.0E-104 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_1936 17aba1f89b019671056154d8e1a9fbc2 374 SUPERFAMILY SSF53383 1 364 6.53E-81 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1936 17aba1f89b019671056154d8e1a9fbc2 374 Pfam PF00266 Aminotransferase class-V 17 340 7.5E-51 T 14-10-2018 IPR000192 Aminotransferase class V domain Thimo_0754 cb5d44d6771c7dbec1b260bc0f464e11 288 Pfam PF03755 YicC-like family, N-terminal region 2 153 4.1E-39 T 14-10-2018 IPR013527 YicC-like, N-terminal Thimo_0754 cb5d44d6771c7dbec1b260bc0f464e11 288 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 288 9.6E-92 T 14-10-2018 IPR005229 Conserved hypothetical protein CHP00255 Thimo_0754 cb5d44d6771c7dbec1b260bc0f464e11 288 Pfam PF08340 Domain of unknown function (DUF1732) 204 288 1.2E-34 T 14-10-2018 IPR013551 Domain of unknown function DUF1732 Thimo_1720 e445cf73a7ab0f5ef77c3275c213386f 46 Gene3D G3DSA:1.20.1220.20 1 35 1.4E-5 T 14-10-2018 Thimo_0965 a4a801e804ca6823b067b56d0d7474bd 235 PIRSF PIRSF006102 3 222 8.2E-77 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_0965 a4a801e804ca6823b067b56d0d7474bd 235 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 9 211 1.8E-80 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Thimo_0965 a4a801e804ca6823b067b56d0d7474bd 235 Pfam PF02508 Rnf-Nqr subunit, membrane protein 8 203 7.5E-63 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_0965 a4a801e804ca6823b067b56d0d7474bd 235 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 213 27.056 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Thimo_1032 c8f0cd1829d8830fc9731c05da3c6ece 117 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 14 116 1.1E-36 T 14-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Thimo_1032 c8f0cd1829d8830fc9731c05da3c6ece 117 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 117 34.469 T 14-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 Thimo_1032 c8f0cd1829d8830fc9731c05da3c6ece 117 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 98 115 - T 14-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 Thimo_1032 c8f0cd1829d8830fc9731c05da3c6ece 117 Gene3D G3DSA:2.60.300.12 11 117 8.7E-33 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Thimo_1032 c8f0cd1829d8830fc9731c05da3c6ece 117 SUPERFAMILY SSF89360 12 105 1.86E-30 T 14-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Thimo_1032 c8f0cd1829d8830fc9731c05da3c6ece 117 Pfam PF01521 Iron-sulphur cluster biosynthesis 12 112 1.2E-18 T 14-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Thimo_3606 b19e7b7267f59f9f857e05d0ff670b7f 264 Gene3D G3DSA:2.60.440.10 15 262 7.2E-84 T 14-10-2018 IPR027462 Z ring-associated protein D, C-terminal Thimo_3606 b19e7b7267f59f9f857e05d0ff670b7f 264 SUPERFAMILY SSF160950 14 262 1.29E-74 T 14-10-2018 IPR036268 ZapD domain superfamily Thimo_3606 b19e7b7267f59f9f857e05d0ff670b7f 264 Pfam PF07072 Cell division protein 28 238 6.1E-73 T 14-10-2018 IPR009777 Cell division protein ZapD Thimo_3606 b19e7b7267f59f9f857e05d0ff670b7f 264 Gene3D G3DSA:1.10.3900.10 22 189 7.2E-84 T 14-10-2018 Thimo_3606 b19e7b7267f59f9f857e05d0ff670b7f 264 Hamap MF_01092 Cell division protein ZapD [zapD]. 13 262 30.892 T 14-10-2018 IPR009777 Cell division protein ZapD Thimo_0194 fc78498d88872cdcebf421ce68cb1b59 415 Pfam PF02687 FtsX-like permease family 302 408 1.5E-12 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_0194 fc78498d88872cdcebf421ce68cb1b59 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 415 7.3E-154 T 14-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 Thimo_0194 fc78498d88872cdcebf421ce68cb1b59 415 Pfam PF12704 MacB-like periplasmic core domain 27 242 1.3E-18 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Thimo_0969 a976f3d8fa754b12fdd5303d7c2cc619 253 Pfam PF04279 Intracellular septation protein A 32 244 2.5E-64 T 14-10-2018 IPR006008 Intracellular septation protein A GO:0016021 Thimo_0969 a976f3d8fa754b12fdd5303d7c2cc619 253 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 32 245 18.766 T 14-10-2018 IPR006008 Intracellular septation protein A GO:0016021 Thimo_2138 40d2f4fdb3cf192a9f394753237d9ef2 216 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 30 196 9.8E-25 T 14-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component Thimo_2138 40d2f4fdb3cf192a9f394753237d9ef2 216 SUPERFAMILY SSF159594 28 203 5.75E-22 T 14-10-2018 Thimo_1152 7cfddc5bef664734424b8b9d20fb16d8 352 Gene3D G3DSA:3.40.190.10 33 339 4.0E-108 T 14-10-2018 Thimo_1152 7cfddc5bef664734424b8b9d20fb16d8 352 SUPERFAMILY SSF53850 32 351 5.61E-90 T 14-10-2018 Thimo_1152 7cfddc5bef664734424b8b9d20fb16d8 352 Gene3D G3DSA:3.40.190.10 109 293 4.0E-108 T 14-10-2018 Thimo_1152 7cfddc5bef664734424b8b9d20fb16d8 352 Pfam PF12849 PBP superfamily domain 31 322 3.3E-60 T 14-10-2018 IPR024370 PBP domain Thimo_1152 7cfddc5bef664734424b8b9d20fb16d8 352 PIRSF PIRSF002756 6 352 1.8E-109 T 14-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 Thimo_1152 7cfddc5bef664734424b8b9d20fb16d8 352 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 32 351 2.7E-113 T 14-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 Thimo_0154 837fb308eb2a60f060ddb8fb5e8e5ea6 413 Pfam PF03916 Polysulphide reductase, NrfD 43 335 5.4E-56 T 14-10-2018 IPR005614 NrfD family Thimo_0032 f2f9a5481b65c22d16b1fc0669fde1b1 134 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 132 10.954 T 14-10-2018 IPR022907 VapC family GO:0004540 Thimo_0032 f2f9a5481b65c22d16b1fc0669fde1b1 134 Pfam PF01850 PIN domain 4 124 5.3E-16 T 14-10-2018 IPR002716 PIN domain Thimo_0032 f2f9a5481b65c22d16b1fc0669fde1b1 134 Gene3D G3DSA:3.40.50.1010 3 130 5.1E-15 T 14-10-2018 Thimo_0032 f2f9a5481b65c22d16b1fc0669fde1b1 134 SUPERFAMILY SSF88723 1 126 2.58E-20 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_2263 7e6b89ef2445f7c7f1272d63775ec429 460 SUPERFAMILY SSF52540 82 360 2.6E-77 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2263 7e6b89ef2445f7c7f1272d63775ec429 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 15 77 8.2E-6 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2263 7e6b89ef2445f7c7f1272d63775ec429 460 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 5 460 49.404 T 14-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2263 7e6b89ef2445f7c7f1272d63775ec429 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 134 355 2.3E-60 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_2263 7e6b89ef2445f7c7f1272d63775ec429 460 Gene3D G3DSA:3.40.50.12240 16 460 1.9E-152 T 14-10-2018 Thimo_2161 555aac44dce424cf90238778d21591ec 188 SUPERFAMILY SSF103088 76 184 4.71E-19 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_2161 555aac44dce424cf90238778d21591ec 188 PRINTS PR01021 OMPA domain signature 117 132 2.2E-9 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_2161 555aac44dce424cf90238778d21591ec 188 PRINTS PR01021 OMPA domain signature 132 148 2.2E-9 T 14-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Thimo_2161 555aac44dce424cf90238778d21591ec 188 Pfam PF00691 OmpA family 81 169 1.3E-14 T 14-10-2018 IPR006665 OmpA-like domain Thimo_2161 555aac44dce424cf90238778d21591ec 188 Gene3D G3DSA:3.30.1330.60 65 188 4.4E-22 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_1687 ff69f76ace6e92fe06693b8646ac1530 320 Gene3D G3DSA:2.40.440.10 31 305 4.7E-87 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_1687 ff69f76ace6e92fe06693b8646ac1530 320 SUPERFAMILY SSF141523 103 240 7.19E-34 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_1687 ff69f76ace6e92fe06693b8646ac1530 320 Pfam PF03734 L,D-transpeptidase catalytic domain 106 240 2.5E-22 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Thimo_1961 54b2fe9c525aa65671319a240a240acb 189 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 15 189 6.4E-61 T 14-10-2018 IPR018636 Protein of unknown function DUF2058 Thimo_2041 f3cb47bf4e45a03736e09e6e1f861b35 66 Gene3D G3DSA:3.10.20.30 1 66 2.1E-22 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_2041 f3cb47bf4e45a03736e09e6e1f861b35 66 SUPERFAMILY SSF54285 2 65 2.04E-17 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Thimo_2041 f3cb47bf4e45a03736e09e6e1f861b35 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 1.7E-22 T 14-10-2018 IPR010035 ThiS, thiamine-biosynthesis Thimo_2041 f3cb47bf4e45a03736e09e6e1f861b35 66 Pfam PF02597 ThiS family 7 66 3.7E-14 T 14-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 Thimo_2555 a75a8e1dca02ff3cc28257f69c586a6f 183 Pfam PF00156 Phosphoribosyl transferase domain 18 142 4.1E-15 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Thimo_2555 a75a8e1dca02ff3cc28257f69c586a6f 183 SUPERFAMILY SSF53271 10 152 6.56E-34 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_2555 a75a8e1dca02ff3cc28257f69c586a6f 183 Gene3D G3DSA:3.40.50.2020 9 166 4.3E-39 T 14-10-2018 Thimo_0904 02b5d3250885bdf5be1860c21bf7ca33 232 SUPERFAMILY SSF81606 19 230 8.5E-15 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_0904 02b5d3250885bdf5be1860c21bf7ca33 232 Pfam PF13672 Protein phosphatase 2C 11 209 9.4E-33 T 14-10-2018 Thimo_0904 02b5d3250885bdf5be1860c21bf7ca33 232 Gene3D G3DSA:3.60.40.10 24 232 1.7E-10 T 14-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Thimo_0583 06390de60a8da1c02ae9b958d24df747 143 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 73 6.4E-28 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Thimo_0583 06390de60a8da1c02ae9b958d24df747 143 Pfam PF03840 Preprotein translocase SecG subunit 4 72 3.4E-23 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Thimo_0583 06390de60a8da1c02ae9b958d24df747 143 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 3.6E-38 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Thimo_0583 06390de60a8da1c02ae9b958d24df747 143 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 3.6E-38 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Thimo_0583 06390de60a8da1c02ae9b958d24df747 143 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 3.6E-38 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Thimo_0583 06390de60a8da1c02ae9b958d24df747 143 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 3.6E-38 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Thimo_2890 b0ae87232ba3b61839197a2ed93194bf 206 SUPERFAMILY SSF50475 15 165 4.81E-31 T 14-10-2018 Thimo_2890 b0ae87232ba3b61839197a2ed93194bf 206 Pfam PF01613 Flavin reductase like domain 31 160 4.5E-20 T 14-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Thimo_2890 b0ae87232ba3b61839197a2ed93194bf 206 SMART SM00903 27 172 7.5E-19 T 14-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Thimo_2890 b0ae87232ba3b61839197a2ed93194bf 206 Gene3D G3DSA:2.30.110.10 28 181 1.4E-29 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Thimo_0259 aa8f98b2ccff480effc69a7b1b407e29 162 Gene3D G3DSA:1.20.1260.10 2 155 2.3E-36 T 14-10-2018 IPR012347 Ferritin-like Thimo_0259 aa8f98b2ccff480effc69a7b1b407e29 162 SUPERFAMILY SSF47240 6 153 9.82E-18 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_0052 5411a24ac72591bbd08335d2ce06ac0b 201 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 80 196 5.0E-23 T 14-10-2018 IPR034756 Type II secretion system (T2SS), protein M subtype b Thimo_1423 b421cb24e439c98a89fb288eb99536ef 269 Pfam PF00685 Sulfotransferase domain 18 262 1.1E-21 T 14-10-2018 IPR000863 Sulfotransferase domain GO:0008146 Thimo_1423 b421cb24e439c98a89fb288eb99536ef 269 Gene3D G3DSA:3.40.50.300 4 265 5.6E-40 T 14-10-2018 Thimo_1423 b421cb24e439c98a89fb288eb99536ef 269 SUPERFAMILY SSF52540 18 263 4.93E-33 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3780 de723702ac002466eddd257c10671a7c 83 Pfam PF03683 Uncharacterised protein family (UPF0175) 8 79 1.5E-24 T 14-10-2018 IPR005368 Uncharacterised protein family UPF0175 Thimo_0601 71ac5eb9d6973566fcc62abbc3992e33 143 Pfam PF01724 Domain of unknown function DUF29 4 138 5.1E-49 T 14-10-2018 IPR002636 Protein from unkown function DUF29 Thimo_0601 71ac5eb9d6973566fcc62abbc3992e33 143 Gene3D G3DSA:1.20.1220.20 1 141 4.9E-32 T 14-10-2018 Thimo_3184 f1af913e13efbb07b591809105d79e74 753 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 41 - T 14-10-2018 IPR010916 TonB box, conserved site Thimo_3184 f1af913e13efbb07b591809105d79e74 753 SUPERFAMILY SSF56935 23 753 1.07E-72 T 14-10-2018 Thimo_3184 f1af913e13efbb07b591809105d79e74 753 Gene3D G3DSA:2.40.170.20 179 753 3.3E-61 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Thimo_3184 f1af913e13efbb07b591809105d79e74 753 Pfam PF00593 TonB dependent receptor 250 750 1.6E-28 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Thimo_3277 481f3fc15656c590cd082032d5796483 846 Pfam PF10101 Predicted membrane protein (DUF2339) 107 562 2.7E-97 T 14-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane Thimo_3277 481f3fc15656c590cd082032d5796483 846 Pfam PF10101 Predicted membrane protein (DUF2339) 431 837 5.2E-31 T 14-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane Thimo_2817 7bda637d2a90c1e51f16dcc5a4a73c93 316 Pfam PF00990 Diguanylate cyclase, GGDEF domain 147 301 1.5E-45 T 14-10-2018 IPR000160 GGDEF domain Thimo_2817 7bda637d2a90c1e51f16dcc5a4a73c93 316 SUPERFAMILY SSF55073 152 305 4.32E-48 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_2817 7bda637d2a90c1e51f16dcc5a4a73c93 316 SMART SM00267 136 305 2.1E-63 T 14-10-2018 IPR000160 GGDEF domain Thimo_2817 7bda637d2a90c1e51f16dcc5a4a73c93 316 Gene3D G3DSA:3.30.70.270 133 306 2.8E-58 T 14-10-2018 Thimo_2817 7bda637d2a90c1e51f16dcc5a4a73c93 316 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 146 305 2.6E-46 T 14-10-2018 IPR000160 GGDEF domain Thimo_0027 d2fec006ed9da4ea8cb79928bfe59556 318 Pfam PF13480 Acetyltransferase (GNAT) domain 149 266 4.1E-16 T 14-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Thimo_0027 d2fec006ed9da4ea8cb79928bfe59556 318 SUPERFAMILY SSF55729 141 299 9.8E-24 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_0027 d2fec006ed9da4ea8cb79928bfe59556 318 Gene3D G3DSA:3.40.630.30 135 292 1.3E-15 T 14-10-2018 Thimo_0776 a7a858a55aed38ced892e45a8f661313 470 Pfam PF13183 4Fe-4S dicluster domain 69 154 3.8E-11 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0776 a7a858a55aed38ced892e45a8f661313 470 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 140 151 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0776 a7a858a55aed38ced892e45a8f661313 470 SUPERFAMILY SSF46548 60 169 2.27E-18 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0776 a7a858a55aed38ced892e45a8f661313 470 Pfam PF02754 Cysteine-rich domain 345 433 8.4E-13 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_0776 a7a858a55aed38ced892e45a8f661313 470 Gene3D G3DSA:1.10.1060.10 45 172 6.0E-8 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0403 f09855814f1feaf68342a0433192b0c2 295 SUPERFAMILY SSF52833 7 219 2.45E-29 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0403 f09855814f1feaf68342a0433192b0c2 295 Pfam PF13743 Thioredoxin 11 190 1.5E-26 T 14-10-2018 Thimo_0403 f09855814f1feaf68342a0433192b0c2 295 Gene3D G3DSA:3.40.30.10 12 211 1.7E-44 T 14-10-2018 Thimo_0403 f09855814f1feaf68342a0433192b0c2 295 Pfam PF09012 FeoC like transcriptional regulator 233 281 1.2E-4 T 14-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC Thimo_0403 f09855814f1feaf68342a0433192b0c2 295 Gene3D G3DSA:1.10.472.60 47 183 1.7E-44 T 14-10-2018 Thimo_3376 48b4485d00d7835233af214fb042ca42 231 Pfam PF01618 MotA/TolQ/ExbB proton channel family 89 208 6.0E-32 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Thimo_2415 bf9f2583b212157dcdf485aeac51e3b7 316 Gene3D G3DSA:1.10.8.550 261 311 2.7E-11 T 14-10-2018 Thimo_2415 bf9f2583b212157dcdf485aeac51e3b7 316 Gene3D G3DSA:3.40.1500.20 5 233 6.2E-17 T 14-10-2018 Thimo_2415 bf9f2583b212157dcdf485aeac51e3b7 316 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 263 305 3.3E-11 T 14-10-2018 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 Thimo_0607 1ce8413baea1d35e9aaa59019b80f8fe 294 Pfam PF07603 Protein of unknown function (DUF1566) 134 279 3.7E-29 T 14-10-2018 IPR011460 Protein of unknown function DUF1566 Thimo_3220 949bb3fddddefe9315753486b80ee160 105 SMART SM00530 49 103 0.0049 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3220 949bb3fddddefe9315753486b80ee160 105 Pfam PF13560 Helix-turn-helix domain 50 93 6.1E-7 T 14-10-2018 Thimo_3220 949bb3fddddefe9315753486b80ee160 105 Gene3D G3DSA:1.10.260.40 2 102 1.8E-16 T 14-10-2018 Thimo_3220 949bb3fddddefe9315753486b80ee160 105 SUPERFAMILY SSF47413 48 99 1.64E-10 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 Pfam PF12186 Acyl-CoA dehydrogenase C terminal 459 558 1.0E-7 T 14-10-2018 IPR020964 Acyl-CoA dehydrogenase, C-terminal Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 Gene3D G3DSA:1.10.540.10 47 170 1.6E-20 T 14-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 SUPERFAMILY SSF158494 446 558 1.7E-13 T 14-10-2018 IPR036797 Acyl-CoA dehydrogenase, C-terminal domain superfamily Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 379 3.6E-16 T 14-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 Gene3D G3DSA:2.40.110.10 172 283 2.6E-25 T 14-10-2018 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 173 267 4.4E-22 T 14-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 Gene3D G3DSA:1.20.140.10 284 449 1.7E-48 T 14-10-2018 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 175 187 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 413 432 - T 14-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 SUPERFAMILY SSF56645 49 274 5.1E-51 T 14-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 Gene3D G3DSA:1.20.120.470 450 568 4.7E-9 T 14-10-2018 IPR036797 Acyl-CoA dehydrogenase, C-terminal domain superfamily Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 SUPERFAMILY SSF47203 282 456 1.93E-43 T 14-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Thimo_0438 a902130999b8a131a058e7c7fcfc4e65 573 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 54 169 4.8E-18 T 14-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Thimo_2576 11deedcde116791872dcd204be172203 68 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 62 5.7E-10 T 14-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system Thimo_2576 11deedcde116791872dcd204be172203 68 Gene3D G3DSA:3.30.160.250 1 67 1.7E-18 T 14-10-2018 Thimo_2576 11deedcde116791872dcd204be172203 68 SUPERFAMILY SSF143100 1 59 1.57E-18 T 14-10-2018 IPR035069 TTHA1013/TTHA0281-like Thimo_3201 60c3e9f605affcdbf6af659e72822046 169 SUPERFAMILY SSF50199 26 146 2.35E-30 T 14-10-2018 Thimo_3201 60c3e9f605affcdbf6af659e72822046 169 Pfam PF00565 Staphylococcal nuclease homologue 51 145 3.3E-17 T 14-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Thimo_3201 60c3e9f605affcdbf6af659e72822046 169 SMART SM00318 24 146 5.9E-15 T 14-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Thimo_3201 60c3e9f605affcdbf6af659e72822046 169 Gene3D G3DSA:2.40.50.90 27 161 5.8E-27 T 14-10-2018 IPR035437 SNase-like, OB-fold superfamily Thimo_1699 b20bd947696ddd7249bd315d09bcc5cd 325 Gene3D G3DSA:3.40.50.970 1 193 1.0E-77 T 14-10-2018 Thimo_1699 b20bd947696ddd7249bd315d09bcc5cd 325 Gene3D G3DSA:3.40.50.920 194 325 3.3E-52 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_1699 b20bd947696ddd7249bd315d09bcc5cd 325 Pfam PF02779 Transketolase, pyrimidine binding domain 4 179 9.0E-39 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_1699 b20bd947696ddd7249bd315d09bcc5cd 325 SUPERFAMILY SSF52518 1 205 5.4E-60 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1699 b20bd947696ddd7249bd315d09bcc5cd 325 SMART SM00861 4 181 8.0E-50 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Thimo_1699 b20bd947696ddd7249bd315d09bcc5cd 325 Pfam PF02780 Transketolase, C-terminal domain 195 317 4.8E-43 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Thimo_1699 b20bd947696ddd7249bd315d09bcc5cd 325 SUPERFAMILY SSF52922 189 324 1.18E-43 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 Gene3D G3DSA:2.20.28.140 2 38 1.5E-13 T 14-10-2018 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 PIRSF PIRSF000077 39 144 4.7E-30 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 PRINTS PR00421 Thioredoxin family signature 60 68 5.7E-8 T 14-10-2018 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 PRINTS PR00421 Thioredoxin family signature 108 119 5.7E-8 T 14-10-2018 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 PRINTS PR00421 Thioredoxin family signature 68 77 5.7E-8 T 14-10-2018 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 ProSitePatterns PS00194 Thioredoxin family active site. 61 79 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 Gene3D G3DSA:3.40.30.10 42 144 9.0E-28 T 14-10-2018 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 Pfam PF00085 Thioredoxin 43 141 1.9E-25 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 TIGRFAM TIGR01068 thioredoxin: thioredoxin 46 141 5.3E-31 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Thimo_2344 4c99c5bf67963229110eac7790f003d3 144 SUPERFAMILY SSF52833 29 144 2.78E-34 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0609 f77c4849ebed82a567b21746270132e1 232 SMART SM00327 13 188 1.3E-5 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0609 f77c4849ebed82a567b21746270132e1 232 Gene3D G3DSA:3.40.50.410 15 191 1.6E-16 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0609 f77c4849ebed82a567b21746270132e1 232 Pfam PF00092 von Willebrand factor type A domain 60 171 1.6E-5 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0609 f77c4849ebed82a567b21746270132e1 232 SUPERFAMILY SSF53300 12 190 1.59E-17 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1142 3fdae2d08088ac188cf8387f92549238 358 Pfam PF13439 Glycosyltransferase Family 4 16 155 4.4E-8 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Thimo_1142 3fdae2d08088ac188cf8387f92549238 358 Gene3D G3DSA:3.40.50.2000 153 339 3.3E-59 T 14-10-2018 Thimo_1142 3fdae2d08088ac188cf8387f92549238 358 Gene3D G3DSA:3.40.50.2000 16 349 3.3E-59 T 14-10-2018 Thimo_1142 3fdae2d08088ac188cf8387f92549238 358 SUPERFAMILY SSF53756 15 353 1.96E-72 T 14-10-2018 Thimo_1142 3fdae2d08088ac188cf8387f92549238 358 Pfam PF00534 Glycosyl transferases group 1 167 334 4.1E-31 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Thimo_3357 193764eb3771f76d66f20c831f27cfda 360 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 43 68 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Thimo_3357 193764eb3771f76d66f20c831f27cfda 360 Gene3D G3DSA:1.10.645.20 5 360 4.5E-123 T 14-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3357 193764eb3771f76d66f20c831f27cfda 360 SUPERFAMILY SSF56762 15 360 1.05E-108 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3357 193764eb3771f76d66f20c831f27cfda 360 Pfam PF00374 Nickel-dependent hydrogenase 43 112 2.0E-13 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Thimo_3357 193764eb3771f76d66f20c831f27cfda 360 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 284 360 3.8E-16 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3357 193764eb3771f76d66f20c831f27cfda 360 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 283 2.6E-45 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2818 24402db0c65e2d31052017f1e08b51c1 372 Pfam PF02310 B12 binding domain 248 350 2.8E-21 T 14-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Thimo_2818 24402db0c65e2d31052017f1e08b51c1 372 Pfam PF02607 B12 binding domain 164 235 4.4E-12 T 14-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_2818 24402db0c65e2d31052017f1e08b51c1 372 SUPERFAMILY SSF52242 246 368 6.15E-27 T 14-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Thimo_2818 24402db0c65e2d31052017f1e08b51c1 372 Gene3D G3DSA:3.40.50.280 242 366 1.0E-28 T 14-10-2018 Thimo_2818 24402db0c65e2d31052017f1e08b51c1 372 Gene3D G3DSA:1.10.1240.10 161 237 4.6E-14 T 14-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Thimo_0256 0fe4904a56c2402aa3206cd9bfe07dc3 343 SUPERFAMILY SSF46548 233 338 9.16E-15 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0256 0fe4904a56c2402aa3206cd9bfe07dc3 343 Pfam PF17179 4Fe-4S dicluster domain 235 331 4.4E-33 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0256 0fe4904a56c2402aa3206cd9bfe07dc3 343 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 317 328 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0256 0fe4904a56c2402aa3206cd9bfe07dc3 343 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 236 247 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 Pfam PF00361 Proton-conducting membrane transporter 126 404 1.0E-62 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 788 911 3.1E-33 T 14-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 Pfam PF13244 Domain of unknown function (DUF4040) 610 674 9.5E-16 T 14-10-2018 IPR025383 Domain of unknown function DUF4040 Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 3.1E-36 T 14-10-2018 Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 3.1E-36 T 14-10-2018 Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 3.1E-36 T 14-10-2018 Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 3.1E-36 T 14-10-2018 Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 3.1E-36 T 14-10-2018 Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 3.1E-36 T 14-10-2018 Thimo_1792 ec14a5f313047621c1d3037d4d6ede27 932 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 61 113 6.6E-11 T 14-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3282 9e85abfaa9029cc237f6850752565b99 296 Gene3D G3DSA:3.40.50.1400 151 285 3.9E-15 T 14-10-2018 Thimo_3282 9e85abfaa9029cc237f6850752565b99 296 Gene3D G3DSA:3.40.50.1400 8 145 1.1E-13 T 14-10-2018 Thimo_3282 9e85abfaa9029cc237f6850752565b99 296 SUPERFAMILY SSF53800 9 281 2.07E-14 T 14-10-2018 Thimo_1989 9e7ec5d7855ffcb247787aef7f446bc0 120 Pfam PF01934 Protein of unknown function DUF86 15 109 2.7E-22 T 14-10-2018 IPR008201 Protein of unknown function DUF86 Thimo_1361 1c6c729288f2112343ae596e7f37c4de 301 SUPERFAMILY SSF51735 16 296 5.92E-47 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_1361 1c6c729288f2112343ae596e7f37c4de 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 16 223 3.2E-15 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Thimo_1361 1c6c729288f2112343ae596e7f37c4de 301 Gene3D G3DSA:3.40.50.720 11 299 1.2E-86 T 14-10-2018 Thimo_2248 a2859209b43a10c458d56e5486b2665b 152 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 144 2.5E-9 T 14-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Thimo_2248 a2859209b43a10c458d56e5486b2665b 152 Gene3D G3DSA:3.10.180.10 1 150 9.5E-23 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Thimo_2248 a2859209b43a10c458d56e5486b2665b 152 SUPERFAMILY SSF54593 2 147 2.01E-23 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Thimo_3112 49bfa9a0b38ec3671775ac69c7275cc4 396 Pfam PF01098 Cell cycle protein 24 379 1.0E-100 T 14-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3112 49bfa9a0b38ec3671775ac69c7275cc4 396 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 18 387 38.887 T 14-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3112 49bfa9a0b38ec3671775ac69c7275cc4 396 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 20 376 2.1E-125 T 14-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3360 e44dc5a06b26fd554360a05ad11e0bef 285 Pfam PF00146 NADH dehydrogenase 14 281 1.8E-36 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1681 de5947c918fc2c2e64b27a9e3c13fcfa 488 Gene3D G3DSA:3.90.1150.10 336 466 8.1E-44 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_1681 de5947c918fc2c2e64b27a9e3c13fcfa 488 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 1 481 56.75 T 14-10-2018 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 Thimo_1681 de5947c918fc2c2e64b27a9e3c13fcfa 488 SUPERFAMILY SSF53383 8 480 9.52E-114 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1681 de5947c918fc2c2e64b27a9e3c13fcfa 488 Pfam PF02347 Glycine cleavage system P-protein 27 368 3.1E-10 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Thimo_1681 de5947c918fc2c2e64b27a9e3c13fcfa 488 Gene3D G3DSA:3.40.640.10 77 335 9.4E-57 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_1062 7876d1bba1bf716041e4110526f86162 618 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 604 9.2E-146 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Thimo_1062 7876d1bba1bf716041e4110526f86162 618 Pfam PF13721 SecD export protein N-terminal TM region 1 103 2.5E-27 T 14-10-2018 IPR027398 SecD export protein N-terminal TM domain Thimo_1062 7876d1bba1bf716041e4110526f86162 618 SUPERFAMILY SSF82866 414 609 1.44E-43 T 14-10-2018 Thimo_1062 7876d1bba1bf716041e4110526f86162 618 Gene3D G3DSA:3.30.70.3400 222 441 2.8E-48 T 14-10-2018 Thimo_1062 7876d1bba1bf716041e4110526f86162 618 Pfam PF02355 Protein export membrane protein 437 604 8.9E-21 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Thimo_1062 7876d1bba1bf716041e4110526f86162 618 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 348 597 4.1E-79 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Thimo_1062 7876d1bba1bf716041e4110526f86162 618 Gene3D G3DSA:3.30.1360.200 280 435 2.8E-48 T 14-10-2018 Thimo_1062 7876d1bba1bf716041e4110526f86162 618 PRINTS PR00702 Acriflavin resistance protein family signature 581 604 9.7E-6 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1062 7876d1bba1bf716041e4110526f86162 618 PRINTS PR00702 Acriflavin resistance protein family signature 453 476 9.7E-6 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1062 7876d1bba1bf716041e4110526f86162 618 PRINTS PR00702 Acriflavin resistance protein family signature 506 530 9.7E-6 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Thimo_1062 7876d1bba1bf716041e4110526f86162 618 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 618 45.64 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Thimo_2210 e27dec8d5fdc89ee962fd9a2d2266657 113 SUPERFAMILY SSF54913 8 111 2.92E-8 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_1183 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 PIRSF PIRSF002181 1 142 1.4E-49 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Thimo_1183 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.411 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Thimo_1183 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 141 7.8E-64 T 14-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1183 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 SUPERFAMILY SSF52161 5 142 6.02E-59 T 14-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_1183 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 Pfam PF00572 Ribosomal protein L13 15 138 7.7E-58 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Thimo_1183 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 14-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 Thimo_1183 4e3f1cd8b11124a0e4c82f3b9e21e1ee 142 Gene3D G3DSA:3.90.1180.10 1 142 1.4E-62 T 14-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Thimo_1573 8851ad1aa933d202d987522017f1e614 928 Hamap MF_01600 UPF0182 protein . 1 865 17.622 T 14-10-2018 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 Thimo_1573 8851ad1aa933d202d987522017f1e614 928 Pfam PF03699 Uncharacterised protein family (UPF0182) 26 790 4.8E-244 T 14-10-2018 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 Thimo_3162 3fcb454b743fab0620ec033d128ba364 176 Gene3D G3DSA:2.40.440.10 20 176 6.5E-17 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_3162 3fcb454b743fab0620ec033d128ba364 176 Pfam PF03734 L,D-transpeptidase catalytic domain 40 174 4.2E-16 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Thimo_3162 3fcb454b743fab0620ec033d128ba364 176 SUPERFAMILY SSF141523 39 174 1.44E-23 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Thimo_1210 9b5e3aac9be991055e5fcc38408a5319 153 Gene3D G3DSA:3.30.300.20 5 141 2.1E-18 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_1210 9b5e3aac9be991055e5fcc38408a5319 153 SUPERFAMILY SSF82784 6 141 6.41E-19 T 14-10-2018 IPR036102 OsmC/Ohr superfamily Thimo_1210 9b5e3aac9be991055e5fcc38408a5319 153 Pfam PF02566 OsmC-like protein 40 140 8.5E-11 T 14-10-2018 IPR003718 OsmC/Ohr family Thimo_1194 2673047ba9ec1a64c83be68d14fa3142 175 Pfam PF03695 Uncharacterised protein family (UPF0149) 15 171 8.5E-33 T 14-10-2018 IPR011978 Uncharacterised protein family UPF0149 Thimo_1194 2673047ba9ec1a64c83be68d14fa3142 175 SUPERFAMILY SSF101327 10 170 2.62E-35 T 14-10-2018 IPR036255 YgfB-like superfamily Thimo_1194 2673047ba9ec1a64c83be68d14fa3142 175 Gene3D G3DSA:1.20.120.740 2 174 1.1E-50 T 14-10-2018 Thimo_3078 fb751c035dd54fbf0cca114e2d7ba0b4 521 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 345 517 1.5E-33 T 14-10-2018 IPR014263 Methanolan biosynthesis EpsI Thimo_3078 fb751c035dd54fbf0cca114e2d7ba0b4 521 Pfam PF11984 Protein of unknown function (DUF3485) 318 514 1.7E-41 T 14-10-2018 IPR014263 Methanolan biosynthesis EpsI Thimo_3078 fb751c035dd54fbf0cca114e2d7ba0b4 521 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 185 277 1.8E-18 T 14-10-2018 IPR026392 Exosortase/Archaeosortase domain Thimo_3078 fb751c035dd54fbf0cca114e2d7ba0b4 521 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 25 278 1.1E-55 T 14-10-2018 IPR019127 Exosortase Thimo_3078 fb751c035dd54fbf0cca114e2d7ba0b4 521 TIGRFAM TIGR02602 8TM_EpsH: exosortase 39 276 7.1E-45 T 14-10-2018 IPR013426 Exosortase, EpsH-like Thimo_3078 fb751c035dd54fbf0cca114e2d7ba0b4 521 TIGRFAM TIGR04152 exosort_VPLPA: exosortase D, VPLPA-CTERM-specific 41 520 4.7E-145 T 14-10-2018 IPR026491 Exosortase D, VPLPA-CTERM-specific Thimo_2124 fc13321ed50be984aaff021e51cc539b 159 PIRSF PIRSF003174 1 159 1.1E-64 T 14-10-2018 IPR010292 Uncharacterised protein family CreA Thimo_2124 fc13321ed50be984aaff021e51cc539b 159 Pfam PF05981 CreA protein 24 155 2.5E-58 T 14-10-2018 IPR010292 Uncharacterised protein family CreA Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 SUPERFAMILY SSF52467 173 370 1.8E-5 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 SUPERFAMILY SSF52518 13 192 4.58E-31 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 Pfam PF16582 Middle domain of thiamine pyrophosphate 221 398 2.1E-11 T 14-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 19 184 1.2E-27 T 14-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 10 566 32.048 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 Gene3D G3DSA:3.40.50.970 6 180 4.8E-59 T 14-10-2018 Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 SUPERFAMILY SSF52518 376 553 1.04E-15 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 Gene3D G3DSA:3.40.50.1220 217 375 3.4E-38 T 14-10-2018 Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 16 445 4.0E-124 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 Gene3D G3DSA:3.40.50.970 381 570 7.5E-46 T 14-10-2018 Thimo_3312 c5a4c7decbbbd7864548e4f61eb03ca2 572 PIRSF PIRSF004983 7 570 5.8E-136 T 14-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 Thimo_1877 ad9ec1952edf2b9327cd309ff23f620c 228 Pfam PF02224 Cytidylate kinase 5 214 2.5E-73 T 14-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Thimo_1877 ad9ec1952edf2b9327cd309ff23f620c 228 Gene3D G3DSA:3.40.50.300 1 221 2.8E-77 T 14-10-2018 Thimo_1877 ad9ec1952edf2b9327cd309ff23f620c 228 Hamap MF_00238 Cytidylate kinase [cmk]. 3 218 32.713 T 14-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Thimo_1877 ad9ec1952edf2b9327cd309ff23f620c 228 TIGRFAM TIGR00017 cmk: cytidylate kinase 3 213 3.6E-75 T 14-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Thimo_1877 ad9ec1952edf2b9327cd309ff23f620c 228 SUPERFAMILY SSF52540 3 217 2.82E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0487 f4a0bb7639721f8e0234c4615067da5d 69 Pfam PF07869 Protein of unknown function (DUF1656) 4 59 1.3E-21 T 14-10-2018 IPR012451 Protein of unknown function DUF1656 Thimo_0970 130b26211931e47001bcd32737da3670 289 SMART SM00481 5 70 8.3E-19 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Thimo_0970 130b26211931e47001bcd32737da3670 289 Gene3D G3DSA:1.10.150.650 98 169 8.0E-81 T 14-10-2018 Thimo_0970 130b26211931e47001bcd32737da3670 289 Gene3D G3DSA:3.20.20.140 6 250 8.0E-81 T 14-10-2018 Thimo_0970 130b26211931e47001bcd32737da3670 289 SUPERFAMILY SSF89550 6 278 1.16E-50 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Thimo_0970 130b26211931e47001bcd32737da3670 289 Pfam PF02811 PHP domain 6 90 1.6E-8 T 14-10-2018 IPR004013 PHP domain GO:0003824 Thimo_0159 76427fcfc093f0cf84f7453ba7ca9a10 223 Pfam PF01904 Protein of unknown function DUF72 23 132 6.0E-35 T 14-10-2018 IPR002763 Protein of unknown function DUF72 Thimo_0159 76427fcfc093f0cf84f7453ba7ca9a10 223 Gene3D G3DSA:3.20.20.410 3 140 1.9E-43 T 14-10-2018 IPR036520 UPF0759 superfamily Thimo_0159 76427fcfc093f0cf84f7453ba7ca9a10 223 SUPERFAMILY SSF117396 6 138 7.46E-49 T 14-10-2018 IPR036520 UPF0759 superfamily Thimo_1280 448e705234e2d7877afff47b1df0c45f 405 TIGRFAM TIGR02570 cas7_GSU0053: CRISPR-associated protein GSU0053/csb1, Dpsyc system 23 199 4.3E-20 T 14-10-2018 IPR013403 CRISPR-associated protein GSU0053 Thimo_1280 448e705234e2d7877afff47b1df0c45f 405 Pfam PF09617 CRISPR-associated protein GSU0053 (Cas_GSU0053) 21 193 4.1E-56 T 14-10-2018 IPR013403 CRISPR-associated protein GSU0053 Thimo_3664 4a4b57a74c62b696510f47b8bcae071f 487 SUPERFAMILY SSF56935 111 487 1.45E-6 T 14-10-2018 Thimo_1784 a91c15d6302569147c4e53952c5bec7c 298 Pfam PF00348 Polyprenyl synthetase 34 269 4.2E-54 T 14-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Thimo_1784 a91c15d6302569147c4e53952c5bec7c 298 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 84 100 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site Thimo_1784 a91c15d6302569147c4e53952c5bec7c 298 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 216 228 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site Thimo_1784 a91c15d6302569147c4e53952c5bec7c 298 Gene3D G3DSA:1.10.600.10 5 298 4.8E-95 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_1784 a91c15d6302569147c4e53952c5bec7c 298 SUPERFAMILY SSF48576 9 277 1.76E-81 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_1624 b4184adf7c7af5a0ee009fa165b90c78 239 Pfam PF01797 Transposase IS200 like 13 124 4.3E-16 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_1624 b4184adf7c7af5a0ee009fa165b90c78 239 Gene3D G3DSA:3.30.70.1290 1 154 6.0E-33 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_1624 b4184adf7c7af5a0ee009fa165b90c78 239 SMART SM01321 9 124 1.7E-40 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_1624 b4184adf7c7af5a0ee009fa165b90c78 239 SUPERFAMILY SSF143422 3 127 2.22E-32 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2540 42061817aee84675cf7af9737d9dde53 556 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.4E-157 T 14-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Thimo_2540 42061817aee84675cf7af9737d9dde53 556 SUPERFAMILY SSF52540 2 511 6.68E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2540 42061817aee84675cf7af9737d9dde53 556 Pfam PF02463 RecF/RecN/SMC N terminal domain 13 509 8.3E-20 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Thimo_2540 42061817aee84675cf7af9737d9dde53 556 Gene3D G3DSA:3.40.50.300 1 208 1.3E-41 T 14-10-2018 Thimo_2540 42061817aee84675cf7af9737d9dde53 556 Gene3D G3DSA:3.40.50.300 257 553 1.1E-55 T 14-10-2018 Thimo_2540 42061817aee84675cf7af9737d9dde53 556 PIRSF PIRSF003128 1 556 9.6E-159 T 14-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Thimo_1633 28612f56ee1755d712d03c4f63bfa261 358 SUPERFAMILY SSF55326 13 176 1.14E-51 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_1633 28612f56ee1755d712d03c4f63bfa261 358 Pfam PF02769 AIR synthase related protein, C-terminal domain 184 344 5.4E-38 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Thimo_1633 28612f56ee1755d712d03c4f63bfa261 358 SUPERFAMILY SSF56042 179 346 4.19E-60 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_1633 28612f56ee1755d712d03c4f63bfa261 358 Pfam PF00586 AIR synthase related protein, N-terminal domain 71 171 1.4E-15 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Thimo_1633 28612f56ee1755d712d03c4f63bfa261 358 Gene3D G3DSA:3.30.1330.10 12 177 3.8E-68 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Thimo_1633 28612f56ee1755d712d03c4f63bfa261 358 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 13 341 1.2E-137 T 14-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_1633 28612f56ee1755d712d03c4f63bfa261 358 Gene3D G3DSA:3.90.650.10 179 350 4.5E-68 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Thimo_1633 28612f56ee1755d712d03c4f63bfa261 358 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 13 350 46.867 T 14-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Thimo_1847 82202091e7d23ae98eef39b8ea12a194 248 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 234 4.3E-75 T 14-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Thimo_1847 82202091e7d23ae98eef39b8ea12a194 248 Gene3D G3DSA:3.20.20.70 2 245 1.2E-81 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1847 82202091e7d23ae98eef39b8ea12a194 248 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 240 35.267 T 14-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Thimo_1847 82202091e7d23ae98eef39b8ea12a194 248 SUPERFAMILY SSF51366 3 235 5.73E-72 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Thimo_1847 82202091e7d23ae98eef39b8ea12a194 248 Pfam PF00977 Histidine biosynthesis protein 3 232 1.3E-73 T 14-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Thimo_3182 1a6f282a49ca73eeb7773a76be447520 235 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 29 234 8.2E-24 T 14-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 Thimo_3182 1a6f282a49ca73eeb7773a76be447520 235 Gene3D G3DSA:3.40.190.10 25 234 1.9E-35 T 14-10-2018 Thimo_3182 1a6f282a49ca73eeb7773a76be447520 235 SUPERFAMILY SSF53850 20 234 7.25E-41 T 14-10-2018 Thimo_3182 1a6f282a49ca73eeb7773a76be447520 235 Pfam PF13531 Bacterial extracellular solute-binding protein 21 234 3.3E-29 T 14-10-2018 Thimo_3182 1a6f282a49ca73eeb7773a76be447520 235 Gene3D G3DSA:3.40.190.10 94 197 1.9E-35 T 14-10-2018 Thimo_1441 3eb5959ca047671ce85bff88b43cc896 273 Pfam PF00561 alpha/beta hydrolase fold 22 168 1.4E-22 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1441 3eb5959ca047671ce85bff88b43cc896 273 SUPERFAMILY SSF53474 3 256 8.17E-51 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1441 3eb5959ca047671ce85bff88b43cc896 273 Gene3D G3DSA:3.40.50.1820 1 263 1.6E-53 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1441 3eb5959ca047671ce85bff88b43cc896 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 3.6E-13 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1441 3eb5959ca047671ce85bff88b43cc896 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 3.6E-13 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1441 3eb5959ca047671ce85bff88b43cc896 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 3.6E-13 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1441 3eb5959ca047671ce85bff88b43cc896 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 203 217 3.6E-13 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3777 eee41f6c7f95f29ffd21c4ba62bff2d3 699 TIGRFAM TIGR02688 TIGR02688: TIGR02688 family protein 8 452 4.1E-147 T 14-10-2018 IPR014061 Conserved hypothetical protein CHP02688 Thimo_3777 eee41f6c7f95f29ffd21c4ba62bff2d3 699 Pfam PF16565 Phospholipase D-like domain at C-terminus of MIT 552 692 7.8E-52 T 14-10-2018 IPR032341 MIT, C-terminal phospholipase D-like domain Thimo_3777 eee41f6c7f95f29ffd21c4ba62bff2d3 699 Pfam PF13337 Putative ATP-dependent Lon protease 10 465 3.0E-171 T 14-10-2018 IPR014061 Conserved hypothetical protein CHP02688 Thimo_3777 eee41f6c7f95f29ffd21c4ba62bff2d3 699 Gene3D G3DSA:3.30.870.30 535 693 7.3E-55 T 14-10-2018 IPR038113 MIT, C-terminal domain superfamily Thimo_1865 9f7f2484a141d29a4e7236e5f7cc59e6 250 Gene3D G3DSA:3.30.1380.10 26 250 1.2E-68 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_1865 9f7f2484a141d29a4e7236e5f7cc59e6 250 PIRSF PIRSF026671 6 250 2.9E-67 T 14-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Thimo_1865 9f7f2484a141d29a4e7236e5f7cc59e6 250 Pfam PF01427 D-ala-D-ala dipeptidase 181 249 4.8E-15 T 14-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Thimo_1865 9f7f2484a141d29a4e7236e5f7cc59e6 250 Pfam PF01427 D-ala-D-ala dipeptidase 28 150 2.3E-19 T 14-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Thimo_1865 9f7f2484a141d29a4e7236e5f7cc59e6 250 SUPERFAMILY SSF55166 28 249 8.24E-61 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Thimo_1865 9f7f2484a141d29a4e7236e5f7cc59e6 250 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 28 248 32.024 T 14-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Thimo_0028 2e7b1fae4b768aa249682650882d56c5 387 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 26 382 4.1E-31 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Thimo_0028 2e7b1fae4b768aa249682650882d56c5 387 SUPERFAMILY SSF53383 42 385 7.2E-37 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_0028 2e7b1fae4b768aa249682650882d56c5 387 Gene3D G3DSA:3.90.1150.10 263 387 1.2E-5 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_0028 2e7b1fae4b768aa249682650882d56c5 387 Gene3D G3DSA:3.40.640.10 9 226 3.3E-35 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_0830 30b5922923c1273f9b5cef38084e0ea5 294 Gene3D G3DSA:3.40.50.1820 46 263 5.0E-18 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_0830 30b5922923c1273f9b5cef38084e0ea5 294 SUPERFAMILY SSF53474 62 241 4.2E-19 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 341 354 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 251 266 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 289 306 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 62 80 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 268 283 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 194 221 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 122 134 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 157 168 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 PRINTS PR00992 Alanine racemase signature 28 44 2.8E-71 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 TIGRFAM TIGR00492 alr: alanine racemase 8 355 1.2E-108 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 Pfam PF00842 Alanine racemase, C-terminal domain 235 355 2.4E-40 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 SUPERFAMILY SSF51419 10 236 7.2E-64 T 14-10-2018 IPR029066 PLP-binding barrel Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 Gene3D G3DSA:2.40.37.10 10 354 1.2E-121 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 Hamap MF_01201 Alanine racemase. 3 359 33.499 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 33 43 - T 14-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 SUPERFAMILY SSF50621 228 355 4.88E-45 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 Gene3D G3DSA:3.20.20.10 12 219 1.2E-121 T 14-10-2018 IPR029066 PLP-binding barrel Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 Pfam PF01168 Alanine racemase, N-terminal domain 10 221 1.0E-62 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_1514 31ebbdbbcd7cf83cc1132661796bfd45 369 SMART SM01005 235 359 4.1E-61 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Thimo_3649 933071ce5a5dacf998d9a304580238dd 206 SUPERFAMILY SSF53335 7 126 1.39E-22 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3649 933071ce5a5dacf998d9a304580238dd 206 Pfam PF09445 RNA cap guanine-N2 methyltransferase 44 171 9.6E-9 T 14-10-2018 IPR019012 RNA cap guanine-N2 methyltransferase GO:0001510|GO:0008168|GO:0009452 Reactome: R-HSA-1368082|Reactome: R-HSA-1368108|Reactome: R-HSA-191859|Reactome: R-HSA-1989781|Reactome: R-HSA-2151201|Reactome: R-HSA-2426168|Reactome: R-HSA-381340|Reactome: R-HSA-400206|Reactome: R-HSA-400253 Thimo_3649 933071ce5a5dacf998d9a304580238dd 206 Gene3D G3DSA:3.40.50.150 8 201 5.5E-27 T 14-10-2018 Thimo_2982 559759a3d6591d79c37fef80652a80cf 437 Gene3D G3DSA:3.50.50.60 6 279 5.4E-23 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_2982 559759a3d6591d79c37fef80652a80cf 437 Gene3D G3DSA:3.90.660.20 34 223 5.4E-23 T 14-10-2018 Thimo_2982 559759a3d6591d79c37fef80652a80cf 437 Pfam PF01593 Flavin containing amine oxidoreductase 12 278 2.1E-16 T 14-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Thimo_2982 559759a3d6591d79c37fef80652a80cf 437 Gene3D G3DSA:1.10.3110.10 105 197 5.4E-23 T 14-10-2018 Thimo_2982 559759a3d6591d79c37fef80652a80cf 437 SUPERFAMILY SSF51905 3 415 1.17E-50 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3473 846571d24c13a11c8865e071a4d520b4 572 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 13 29 4.4E-13 T 14-10-2018 Thimo_3473 846571d24c13a11c8865e071a4d520b4 572 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 37 51 4.4E-13 T 14-10-2018 Thimo_3473 846571d24c13a11c8865e071a4d520b4 572 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 140 164 4.4E-13 T 14-10-2018 Thimo_3473 846571d24c13a11c8865e071a4d520b4 572 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 101 113 4.4E-13 T 14-10-2018 Thimo_3473 846571d24c13a11c8865e071a4d520b4 572 SUPERFAMILY SSF53335 6 214 2.66E-31 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3473 846571d24c13a11c8865e071a4d520b4 572 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 104 110 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Thimo_3473 846571d24c13a11c8865e071a4d520b4 572 Pfam PF02384 N-6 DNA Methylase 4 163 4.4E-6 T 14-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Thimo_3473 846571d24c13a11c8865e071a4d520b4 572 Gene3D G3DSA:3.40.50.150 15 223 2.5E-29 T 14-10-2018 Thimo_3574 d248caece72f7e91cf86599b422bffd4 242 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 35 174 4.7E-19 T 14-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 Thimo_3574 d248caece72f7e91cf86599b422bffd4 242 SUPERFAMILY SSF51197 1 193 2.11E-62 T 14-10-2018 Thimo_3574 d248caece72f7e91cf86599b422bffd4 242 Gene3D G3DSA:2.60.120.330 4 196 4.0E-56 T 14-10-2018 IPR027443 Isopenicillin N synthase-like Thimo_3314 115d5d73bef5f131b43db9d36743e5cb 297 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 7 291 20.268 T 14-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 Thimo_3314 115d5d73bef5f131b43db9d36743e5cb 297 Pfam PF01040 UbiA prenyltransferase family 24 259 1.4E-34 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Thimo_3314 115d5d73bef5f131b43db9d36743e5cb 297 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 16 288 3.4E-51 T 14-10-2018 Thimo_3314 115d5d73bef5f131b43db9d36743e5cb 297 PIRSF PIRSF005355 2 294 3.5E-79 T 14-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 Thimo_0360 5a5c996f55ca8bd2d92f9e4ef90302a8 226 Pfam PF08867 FRG domain 23 115 1.6E-28 T 14-10-2018 IPR014966 FRG domain Thimo_0360 5a5c996f55ca8bd2d92f9e4ef90302a8 226 SMART SM00901 20 120 1.0E-36 T 14-10-2018 IPR014966 FRG domain Thimo_0459 1b82281de14735e4d04cd9da783816f1 441 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 34 403 4.1E-96 T 14-10-2018 IPR030931 Group II intron reverse transcriptase/maturase Thimo_0459 1b82281de14735e4d04cd9da783816f1 441 SUPERFAMILY SSF56672 27 346 8.09E-46 T 14-10-2018 Thimo_0459 1b82281de14735e4d04cd9da783816f1 441 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 86 316 5.7E-34 T 14-10-2018 IPR000477 Reverse transcriptase domain Thimo_1488 c7424e50619c2fe7122de2cc8de0ae77 212 SUPERFAMILY SSF160527 82 199 9.68E-17 T 14-10-2018 Thimo_1488 c7424e50619c2fe7122de2cc8de0ae77 212 Gene3D G3DSA:3.30.2320.30 81 200 1.1E-19 T 14-10-2018 IPR038495 V-type ATPase subunit E, C-terminal domain superfamily Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1488 c7424e50619c2fe7122de2cc8de0ae77 212 Pfam PF01991 ATP synthase (E/31 kDa) subunit 11 199 8.7E-18 T 14-10-2018 IPR002842 V-type ATPase subunit E GO:0015991|GO:0033178|GO:0046961 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2141 ec43858df0d08f3ef8d178ee3ff911d8 102 Gene3D G3DSA:2.60.120.10 14 102 1.1E-27 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_2141 ec43858df0d08f3ef8d178ee3ff911d8 102 SUPERFAMILY SSF51182 6 102 4.46E-18 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Thimo_2141 ec43858df0d08f3ef8d178ee3ff911d8 102 Pfam PF07883 Cupin domain 45 98 1.7E-12 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Thimo_3087 60e0f3c347e8a6f7a6246794e65277af 757 SUPERFAMILY SSF49265 52 122 2.75E-8 T 14-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Thimo_3087 60e0f3c347e8a6f7a6246794e65277af 757 Pfam PF00801 PKD domain 140 196 2.1E-5 T 14-10-2018 IPR000601 PKD domain Thimo_3087 60e0f3c347e8a6f7a6246794e65277af 757 SMART SM00089 129 203 1.3E-6 T 14-10-2018 IPR022409 PKD/Chitinase domain Thimo_3087 60e0f3c347e8a6f7a6246794e65277af 757 Gene3D G3DSA:2.60.40.10 39 127 1.7E-8 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_3087 60e0f3c347e8a6f7a6246794e65277af 757 Gene3D G3DSA:2.60.40.10 128 206 1.7E-15 T 14-10-2018 IPR013783 Immunoglobulin-like fold Thimo_3087 60e0f3c347e8a6f7a6246794e65277af 757 SUPERFAMILY SSF49299 71 206 2.35E-18 T 14-10-2018 IPR035986 PKD domain superfamily Thimo_3251 8323c4ecd64c32b202a1cd08ac62408b 94 SUPERFAMILY SSF54292 5 92 1.12E-22 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Thimo_3251 8323c4ecd64c32b202a1cd08ac62408b 94 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 84 1.2E-14 T 14-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Thimo_3251 8323c4ecd64c32b202a1cd08ac62408b 94 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 14-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Thimo_3251 8323c4ecd64c32b202a1cd08ac62408b 94 Gene3D G3DSA:3.10.20.30 4 94 5.7E-21 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Thimo_0254 00e1401e74b9c0078452a384a74c2a82 150 Pfam PF02662 Methyl-viologen-reducing hydrogenase, delta subunit 19 141 3.3E-49 T 14-10-2018 IPR003813 F420-non-reducing hydrogenase iron-sulfur subunit D GO:0055114 Thimo_1901 0da95b791fbb3fb817a7decd0500c709 127 Pfam PF00245 Alkaline phosphatase 22 96 4.8E-15 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Thimo_1901 0da95b791fbb3fb817a7decd0500c709 127 PRINTS PR00113 Alkaline phosphatase signature 22 42 2.9E-7 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Thimo_1901 0da95b791fbb3fb817a7decd0500c709 127 PRINTS PR00113 Alkaline phosphatase signature 72 87 2.9E-7 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Thimo_1901 0da95b791fbb3fb817a7decd0500c709 127 SUPERFAMILY SSF53649 13 98 6.8E-21 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Thimo_1901 0da95b791fbb3fb817a7decd0500c709 127 Gene3D G3DSA:3.40.720.10 4 120 1.3E-20 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Thimo_3424 37ab0c137ba3f1c3b1af85dc1b40e583 576 Pfam PF01734 Patatin-like phospholipase 35 97 2.8E-6 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Thimo_3424 37ab0c137ba3f1c3b1af85dc1b40e583 576 SUPERFAMILY SSF52151 34 417 9.68E-17 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_3338 a36eea3cb7de32c8c23747494e60bb3e 527 Pfam PF05977 Transmembrane secretion effector 3 522 2.0E-175 T 14-10-2018 IPR010290 Transmembrane secretion effector Thimo_3338 a36eea3cb7de32c8c23747494e60bb3e 527 Gene3D G3DSA:1.20.1250.20 6 395 9.5E-38 T 14-10-2018 Thimo_3338 a36eea3cb7de32c8c23747494e60bb3e 527 SUPERFAMILY SSF103473 10 396 4.71E-46 T 14-10-2018 IPR036259 MFS transporter superfamily Thimo_0627 3cbd4905be5b1b7e6d32e5540c950655 206 SUPERFAMILY SSF53955 46 193 2.19E-22 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_0627 3cbd4905be5b1b7e6d32e5540c950655 206 Gene3D G3DSA:1.10.530.10 58 202 8.7E-17 T 14-10-2018 Thimo_1789 407a2c7d5b44f8ead3ffa4593a1fa644 161 Pfam PF01899 Na+/H+ ion antiporter subunit 13 159 3.6E-44 T 14-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Thimo_1789 407a2c7d5b44f8ead3ffa4593a1fa644 161 PIRSF PIRSF019239 1 161 1.3E-46 T 14-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Thimo_0765 ffbeab99a95ea3644abddb02e02e395c 472 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 16 136 1.4E-44 T 14-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0765 ffbeab99a95ea3644abddb02e02e395c 472 SUPERFAMILY SSF54966 3 140 6.94E-57 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0765 ffbeab99a95ea3644abddb02e02e395c 472 Gene3D G3DSA:3.20.20.110 142 472 6.7E-156 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0765 ffbeab99a95ea3644abddb02e02e395c 472 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 188 196 - T 14-10-2018 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0765 ffbeab99a95ea3644abddb02e02e395c 472 SUPERFAMILY SSF51649 142 468 3.66E-143 T 14-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0765 ffbeab99a95ea3644abddb02e02e395c 472 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 146 454 6.1E-131 T 14-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0765 ffbeab99a95ea3644abddb02e02e395c 472 Hamap MF_01338 Ribulose bisphosphate carboxylase large chain [rbcL]. 1 467 59.602 T 14-10-2018 IPR020888 Ribulose bisphosphate carboxylase large subunit, type I GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0765 ffbeab99a95ea3644abddb02e02e395c 472 Gene3D G3DSA:3.30.70.150 14 139 3.8E-50 T 14-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 Thimo_0946 0388234b8c53766fabc5a7ede7effc4b 419 Pfam PF07670 Nucleoside recognition 106 201 9.8E-6 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Thimo_0946 0388234b8c53766fabc5a7ede7effc4b 419 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 13 86 7.6E-23 T 14-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 Thimo_0946 0388234b8c53766fabc5a7ede7effc4b 419 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 213 417 2.7E-65 T 14-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 Thimo_2810 cc183a20711337669174374d0c6d3c99 221 SUPERFAMILY SSF46626 130 219 3.73E-18 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2810 cc183a20711337669174374d0c6d3c99 221 PIRSF PIRSF000005 17 221 1.8E-58 T 14-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Thimo_2810 cc183a20711337669174374d0c6d3c99 221 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 44 117 1.8E-7 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2810 cc183a20711337669174374d0c6d3c99 221 Gene3D G3DSA:1.10.760.10 47 122 1.0E-22 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2810 cc183a20711337669174374d0c6d3c99 221 SUPERFAMILY SSF46626 54 122 5.29E-19 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2810 cc183a20711337669174374d0c6d3c99 221 Pfam PF00034 Cytochrome c 135 220 2.0E-5 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2810 cc183a20711337669174374d0c6d3c99 221 Gene3D G3DSA:1.10.760.10 127 221 8.5E-24 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0111 f7008a91192c7eba5c283725e2a5b3c6 340 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 36 307 4.3E-48 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Thimo_0111 f7008a91192c7eba5c283725e2a5b3c6 340 PIRSF PIRSF026649 19 316 7.0E-78 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 173 198 - T 14-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 3.7E-79 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 1.8E-46 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 SMART SM01002 149 297 8.3E-85 T 14-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 Gene3D G3DSA:3.40.50.720 130 305 9.1E-137 T 14-10-2018 Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 PIRSF PIRSF000183 1 371 9.5E-143 T 14-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 SUPERFAMILY SSF52283 1 360 2.13E-60 T 14-10-2018 Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 SMART SM01003 4 137 4.1E-74 T 14-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 SUPERFAMILY SSF51735 137 303 3.94E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 Gene3D G3DSA:3.40.50.720 3 351 9.1E-137 T 14-10-2018 Thimo_3040 2ce11a5f80acd3222a1b31cc1992d908 376 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 2.6E-147 T 14-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 Thimo_2609 7889fc63817d26645ffde5ff0436b2d8 153 Gene3D G3DSA:1.20.120.10 12 153 9.1E-35 T 14-10-2018 Thimo_2609 7889fc63817d26645ffde5ff0436b2d8 153 PIRSF PIRSF000027 10 153 2.8E-31 T 14-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 Thimo_2609 7889fc63817d26645ffde5ff0436b2d8 153 SUPERFAMILY SSF47175 25 152 2.94E-36 T 14-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 Thimo_2609 7889fc63817d26645ffde5ff0436b2d8 153 Pfam PF01322 Cytochrome C' 30 151 1.6E-33 T 14-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 Thimo_2609 7889fc63817d26645ffde5ff0436b2d8 153 PRINTS PR00608 Class II cytochrome C signature 117 140 3.9E-9 T 14-10-2018 IPR015984 Cytochrome c prime, subgroup Thimo_2609 7889fc63817d26645ffde5ff0436b2d8 153 PRINTS PR00608 Class II cytochrome C signature 140 151 3.9E-9 T 14-10-2018 IPR015984 Cytochrome c prime, subgroup Thimo_0889 f6b5f52a9a63d82b5519cc6ee9f2be53 88 Gene3D G3DSA:1.10.238.160 7 54 5.6E-6 T 14-10-2018 Thimo_0889 f6b5f52a9a63d82b5519cc6ee9f2be53 88 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 6 51 5.6E-8 T 14-10-2018 IPR010260 DNA-binding transcriptional activator AlpA Thimo_0180 81ed51d2fb8851d7aba89bdf1842b1ac 203 SUPERFAMILY SSF52833 18 178 7.37E-28 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0180 81ed51d2fb8851d7aba89bdf1842b1ac 203 Gene3D G3DSA:3.40.30.10 30 186 6.4E-30 T 14-10-2018 Thimo_0180 81ed51d2fb8851d7aba89bdf1842b1ac 203 Pfam PF00578 AhpC/TSA family 46 135 1.4E-14 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Thimo_2638 d7a5f64f3650e49f466297dcbccdc0ae 76 Pfam PF01206 Sulfurtransferase TusA 7 75 7.5E-23 T 14-10-2018 IPR001455 TusA-like domain Thimo_2638 d7a5f64f3650e49f466297dcbccdc0ae 76 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 8 32 - T 14-10-2018 IPR001455 TusA-like domain Thimo_2638 d7a5f64f3650e49f466297dcbccdc0ae 76 Gene3D G3DSA:3.30.110.40 1 76 1.9E-30 T 14-10-2018 IPR036868 TusA-like domain superfamily Thimo_2638 d7a5f64f3650e49f466297dcbccdc0ae 76 SUPERFAMILY SSF64307 3 75 1.83E-23 T 14-10-2018 IPR036868 TusA-like domain superfamily Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 Gene3D G3DSA:1.10.10.10 2 146 9.5E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 14-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 9.9E-7 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 9.9E-7 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 9.9E-7 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 9.9E-7 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 SUPERFAMILY SSF46785 11 146 8.61E-34 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 Pfam PF01047 MarR family 42 94 1.6E-12 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_2798 ea304f81e043bc895c93ae7d25bcf380 155 SMART SM00347 31 131 2.9E-19 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 Gene3D G3DSA:3.30.50.30 4 54 1.9E-25 T 14-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 SMART SM00382 112 297 2.6E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 394 1.1E-15 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 Gene3D G3DSA:3.40.50.300 58 315 3.0E-109 T 14-10-2018 Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 SUPERFAMILY SSF52540 63 402 3.85E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 Gene3D G3DSA:1.10.8.60 316 422 2.3E-40 T 14-10-2018 Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 12 411 1.9E-203 T 14-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 SUPERFAMILY SSF57716 15 50 7.27E-12 T 14-10-2018 Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 SMART SM00994 14 53 1.8E-24 T 14-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 Pfam PF06689 ClpX C4-type zinc finger 15 52 2.1E-20 T 14-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 113 310 1.8E-47 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 SMART SM01086 317 412 4.6E-35 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Thimo_0431 6d725e68788d4bc983c250592f0e96dd 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 7 415 52.74 T 14-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Thimo_1385 b3ae3d29d0c7f35ac164e6f6e9d349e1 327 Gene3D G3DSA:1.40.20.10 1 287 9.0E-28 T 14-10-2018 IPR038186 CHAD domain superfamily Thimo_1385 b3ae3d29d0c7f35ac164e6f6e9d349e1 327 Pfam PF05235 CHAD domain 31 245 1.7E-35 T 14-10-2018 IPR007899 CHAD domain Thimo_1385 b3ae3d29d0c7f35ac164e6f6e9d349e1 327 SMART SM00880 15 278 3.1E-33 T 14-10-2018 IPR007899 CHAD domain Thimo_1576 6d509aed6f19ff8773bc80656f88c357 106 Pfam PF01527 Transposase 3 86 9.7E-6 T 14-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Thimo_1576 6d509aed6f19ff8773bc80656f88c357 106 Gene3D G3DSA:1.10.10.10 1 65 7.1E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1576 6d509aed6f19ff8773bc80656f88c357 106 SUPERFAMILY SSF46689 4 98 3.05E-11 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_1345 2ba317b2c69354bf9fa7a3b94fa09f60 67 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 47 5.3E-13 T 14-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type Thimo_1345 2ba317b2c69354bf9fa7a3b94fa09f60 67 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 9.0E-19 T 14-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 58 70 3.5E-17 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 3.5E-17 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 40 56 3.5E-17 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 19 35 3.5E-17 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 14-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 Pfam PF01455 HupF/HypC family 1 67 2.3E-24 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 SUPERFAMILY SSF159127 1 71 1.27E-21 T 14-10-2018 IPR037254 HupF/HypC superfamily Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 69 1.5E-20 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Thimo_3270 5343188aba0d838e26ec0a9595527f6c 83 Gene3D G3DSA:2.40.50.970 1 75 1.7E-24 T 14-10-2018 IPR037254 HupF/HypC superfamily Thimo_0251 1f301406ee84420e908fcc06762294aa 333 Gene3D G3DSA:3.40.50.970 84 227 2.5E-28 T 14-10-2018 Thimo_0251 1f301406ee84420e908fcc06762294aa 333 SUPERFAMILY SSF52518 24 273 3.14E-74 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_0251 1f301406ee84420e908fcc06762294aa 333 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 63 209 1.9E-35 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Thimo_1019 b76541a29b6830be7504ce1394cd749a 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 33 359 7.4E-98 T 14-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Thimo_1019 b76541a29b6830be7504ce1394cd749a 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 3 358 1.9E-88 T 14-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 Thimo_1019 b76541a29b6830be7504ce1394cd749a 376 SUPERFAMILY SSF53756 3 361 7.46E-103 T 14-10-2018 Thimo_1019 b76541a29b6830be7504ce1394cd749a 376 Gene3D G3DSA:3.40.50.2000 3 192 8.1E-68 T 14-10-2018 Thimo_1019 b76541a29b6830be7504ce1394cd749a 376 Gene3D G3DSA:3.40.50.2000 193 335 1.9E-48 T 14-10-2018 Thimo_3601 91feb4de1ab1dc9b2a2b1a266b82afcf 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 238 3.2E-53 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Thimo_3601 91feb4de1ab1dc9b2a2b1a266b82afcf 335 SUPERFAMILY SSF51735 1 333 1.08E-88 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_3601 91feb4de1ab1dc9b2a2b1a266b82afcf 335 Gene3D G3DSA:3.40.50.720 1 335 2.9E-92 T 14-10-2018 Thimo_3601 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 4.7E-31 T 14-10-2018 Thimo_3601 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 4.7E-31 T 14-10-2018 Thimo_3601 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 4.7E-31 T 14-10-2018 Thimo_3601 91feb4de1ab1dc9b2a2b1a266b82afcf 335 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 4.7E-31 T 14-10-2018 Thimo_3469 481b87a382f394c474dcb4b4282283ac 440 Gene3D G3DSA:3.40.50.2000 10 402 9.2E-90 T 14-10-2018 Thimo_3469 481b87a382f394c474dcb4b4282283ac 440 SUPERFAMILY SSF53756 10 418 2.93E-71 T 14-10-2018 Thimo_3469 481b87a382f394c474dcb4b4282283ac 440 Gene3D G3DSA:3.40.50.2000 226 401 9.2E-90 T 14-10-2018 Thimo_3469 481b87a382f394c474dcb4b4282283ac 440 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 13 125 2.6E-8 T 14-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_0261 776fc9502b8c10700bc932f6373d9497 146 SUPERFAMILY SSF101116 10 129 1.7E-35 T 14-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 Thimo_0261 776fc9502b8c10700bc932f6373d9497 146 Gene3D G3DSA:1.20.120.340 1 128 3.9E-39 T 14-10-2018 Thimo_0261 776fc9502b8c10700bc932f6373d9497 146 Pfam PF02561 Flagellar protein FliS 10 124 3.5E-35 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Thimo_0261 776fc9502b8c10700bc932f6373d9497 146 PIRSF PIRSF039090 1 134 5.1E-41 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Thimo_0261 776fc9502b8c10700bc932f6373d9497 146 TIGRFAM TIGR00208 fliS: flagellar protein FliS 15 124 7.0E-25 T 14-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Thimo_3592 3c66f5c802f86841e48a740a177407f6 171 SUPERFAMILY SSF55729 14 151 3.43E-21 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_3592 3c66f5c802f86841e48a740a177407f6 171 Pfam PF00583 Acetyltransferase (GNAT) family 65 147 1.0E-9 T 14-10-2018 IPR000182 GNAT domain Thimo_3592 3c66f5c802f86841e48a740a177407f6 171 Gene3D G3DSA:3.40.630.30 8 158 1.1E-19 T 14-10-2018 Thimo_3576 d2acbd84771dfdee3ed8cab4d5f6e6a8 302 Gene3D G3DSA:2.60.120.620 20 235 1.5E-29 T 14-10-2018 Thimo_3576 d2acbd84771dfdee3ed8cab4d5f6e6a8 302 SUPERFAMILY SSF51197 26 235 6.5E-25 T 14-10-2018 Thimo_3576 d2acbd84771dfdee3ed8cab4d5f6e6a8 302 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 32 214 5.2E-11 T 14-10-2018 IPR008775 Phytanoyl-CoA dioxygenase Thimo_0676 2684d1c21d59ebe4f32c28ed3478b3dc 370 Gene3D G3DSA:3.40.50.2000 206 351 7.6E-9 T 14-10-2018 Thimo_0676 2684d1c21d59ebe4f32c28ed3478b3dc 370 SUPERFAMILY SSF53756 16 348 2.92E-16 T 14-10-2018 Thimo_0676 2684d1c21d59ebe4f32c28ed3478b3dc 370 Gene3D G3DSA:3.40.50.2000 21 144 1.6E-5 T 14-10-2018 Thimo_3603 43d401328bd54efdecf50aa2dd1cb0ec 441 Gene3D G3DSA:3.30.420.40 19 250 9.5E-46 T 14-10-2018 Thimo_3603 43d401328bd54efdecf50aa2dd1cb0ec 441 SUPERFAMILY SSF53067 259 440 2.38E-16 T 14-10-2018 Thimo_3603 43d401328bd54efdecf50aa2dd1cb0ec 441 SUPERFAMILY SSF53067 21 257 2.83E-37 T 14-10-2018 Thimo_3603 43d401328bd54efdecf50aa2dd1cb0ec 441 PIRSF PIRSF000538 18 440 5.0E-49 T 14-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Thimo_3603 43d401328bd54efdecf50aa2dd1cb0ec 441 Gene3D G3DSA:3.30.420.40 251 441 3.5E-27 T 14-10-2018 Thimo_3603 43d401328bd54efdecf50aa2dd1cb0ec 441 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 299 439 1.5E-10 T 14-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Thimo_3603 43d401328bd54efdecf50aa2dd1cb0ec 441 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 21 129 3.2E-15 T 14-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Thimo_3280 8b80998c7b96c171ce35ce0911823dfb 301 Pfam PF08241 Methyltransferase domain 84 183 2.7E-17 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_3280 8b80998c7b96c171ce35ce0911823dfb 301 Gene3D G3DSA:3.40.50.150 48 271 1.4E-41 T 14-10-2018 Thimo_3280 8b80998c7b96c171ce35ce0911823dfb 301 SUPERFAMILY SSF53335 49 277 2.76E-39 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1937 d71d75e4826c0b9d9456ed3e41033577 148 Gene3D G3DSA:3.30.450.20 19 148 2.7E-25 T 14-10-2018 Thimo_1937 d71d75e4826c0b9d9456ed3e41033577 148 SMART SM01049 27 100 3.1E-11 T 14-10-2018 IPR033480 Single Cache domain 2 Thimo_1937 d71d75e4826c0b9d9456ed3e41033577 148 Pfam PF08269 Cache domain 61 147 4.7E-17 T 14-10-2018 IPR004010 Double Cache domain 2 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 Pfam PF01202 Shikimate kinase 13 169 1.4E-52 T 14-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 SUPERFAMILY SSF52540 6 169 1.32E-30 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 59 67 1.4E-24 T 14-10-2018 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 7 22 1.4E-24 T 14-10-2018 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 77 86 1.4E-24 T 14-10-2018 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 31 44 1.4E-24 T 14-10-2018 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 PRINTS PR01100 Shikimate kinase family signature 98 115 1.4E-24 T 14-10-2018 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 Gene3D G3DSA:3.40.50.300 3 173 3.9E-57 T 14-10-2018 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 14-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Thimo_0088 83c5a02f680e2c092ccdf7d4decc656f 174 Hamap MF_00109 Shikimate kinase [aroK]. 4 170 30.259 T 14-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Thimo_0002 7e80587024f26e8e28c54f8c73f54817 130 SUPERFAMILY SSF54211 19 125 1.85E-23 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0002 7e80587024f26e8e28c54f8c73f54817 130 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 31 118 4.0E-13 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Thimo_0002 7e80587024f26e8e28c54f8c73f54817 130 Pfam PF00825 Ribonuclease P 19 125 2.2E-24 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Thimo_0002 7e80587024f26e8e28c54f8c73f54817 130 Gene3D G3DSA:3.30.230.10 15 128 9.1E-31 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Thimo_0002 7e80587024f26e8e28c54f8c73f54817 130 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 19 128 16.218 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Thimo_0002 7e80587024f26e8e28c54f8c73f54817 130 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 22 126 9.0E-20 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Thimo_0869 c9284a1a7648bd590d50302901030304 119 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 6 104 5.9E-7 T 14-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 Thimo_0869 c9284a1a7648bd590d50302901030304 119 Gene3D G3DSA:2.30.30.110 13 108 3.2E-9 T 14-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor Thimo_0869 c9284a1a7648bd590d50302901030304 119 SUPERFAMILY SSF50118 2 108 2.4E-13 T 14-10-2018 Thimo_3459 aba42a87cc9a3c43a053dd3ba1934963 101 Pfam PF01381 Helix-turn-helix 52 94 2.2E-5 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3459 aba42a87cc9a3c43a053dd3ba1934963 101 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 10 96 5.1E-37 T 14-10-2018 IPR014057 Uncharacterized protein HI1420 Thimo_3459 aba42a87cc9a3c43a053dd3ba1934963 101 SUPERFAMILY SSF47413 32 94 1.13E-10 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_3459 aba42a87cc9a3c43a053dd3ba1934963 101 Gene3D G3DSA:1.10.260.40 33 96 5.5E-7 T 14-10-2018 Thimo_1153 0cd2706b7b90eb88f9b63fc95739a44f 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 321 6.9E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_1153 0cd2706b7b90eb88f9b63fc95739a44f 325 SUPERFAMILY SSF161098 41 309 5.05E-35 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1153 0cd2706b7b90eb88f9b63fc95739a44f 325 Gene3D G3DSA:1.10.3720.10 81 318 7.1E-37 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_1153 0cd2706b7b90eb88f9b63fc95739a44f 325 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 28 313 6.2E-90 T 14-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 Thimo_0964 75e346e2df2aabc63d7bb1d4363d28a0 234 SMART SM00900 103 195 7.8E-33 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Thimo_0964 75e346e2df2aabc63d7bb1d4363d28a0 234 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 13 197 3.2E-59 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_0964 75e346e2df2aabc63d7bb1d4363d28a0 234 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 5 197 24.007 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_0964 75e346e2df2aabc63d7bb1d4363d28a0 234 Pfam PF04205 FMN-binding domain 103 192 4.1E-18 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Thimo_0964 75e346e2df2aabc63d7bb1d4363d28a0 234 PIRSF PIRSF006091 1 208 5.5E-67 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Thimo_2209 302605a2ac70b2ddd004e77a1164da7e 125 SMART SM00938 15 108 2.5E-4 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_2209 302605a2ac70b2ddd004e77a1164da7e 125 Pfam PF00543 Nitrogen regulatory protein P-II 15 107 6.6E-7 T 14-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Thimo_2209 302605a2ac70b2ddd004e77a1164da7e 125 Gene3D G3DSA:3.30.70.120 8 109 1.6E-12 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Thimo_2209 302605a2ac70b2ddd004e77a1164da7e 125 SUPERFAMILY SSF54913 14 106 2.99E-16 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Thimo_3591 c3544cd905c8be829b7c9856e4fc7601 281 SUPERFAMILY SSF52540 3 274 6.02E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3591 c3544cd905c8be829b7c9856e4fc7601 281 Gene3D G3DSA:3.40.50.300 1 281 4.9E-45 T 14-10-2018 Thimo_3591 c3544cd905c8be829b7c9856e4fc7601 281 Pfam PF00685 Sulfotransferase domain 3 265 3.3E-18 T 14-10-2018 IPR000863 Sulfotransferase domain GO:0008146 Thimo_1944 26129d82847c4aa831b8cba588bdbcf1 346 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 80 316 1.9E-42 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 Thimo_1944 26129d82847c4aa831b8cba588bdbcf1 346 Gene3D G3DSA:3.40.50.2000 1 160 2.0E-40 T 14-10-2018 Thimo_1944 26129d82847c4aa831b8cba588bdbcf1 346 Gene3D G3DSA:3.40.50.2000 168 344 2.1E-40 T 14-10-2018 Thimo_1944 26129d82847c4aa831b8cba588bdbcf1 346 SUPERFAMILY SSF53756 2 343 2.67E-86 T 14-10-2018 Thimo_0978 d167ac11559bae89119d4b5027f1ca2c 128 Gene3D G3DSA:1.10.10.10 3 111 2.3E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0978 d167ac11559bae89119d4b5027f1ca2c 128 SUPERFAMILY SSF46785 8 103 4.44E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0978 d167ac11559bae89119d4b5027f1ca2c 128 TIGRFAM TIGR04176 MarR_EPS: EPS-associated transcriptional regulator, MarR family 5 107 1.5E-47 T 14-10-2018 IPR026433 EPS-associated transcriptional regulator, MarR family Thimo_0978 d167ac11559bae89119d4b5027f1ca2c 128 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 52 6.6E-15 T 14-10-2018 Thimo_2451 56ea2325c72937eb1d29757500bdedc0 276 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 267 2.3E-80 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Thimo_2451 56ea2325c72937eb1d29757500bdedc0 276 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 273 19.492 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Thimo_2451 56ea2325c72937eb1d29757500bdedc0 276 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 138 150 - T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Thimo_2451 56ea2325c72937eb1d29757500bdedc0 276 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 273 8.6E-77 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Thimo_1382 5234e191c22fc58d79d99a765f4278bb 75 SUPERFAMILY SSF140376 2 74 4.32E-27 T 14-10-2018 IPR037205 ChaB superfamily Thimo_1382 5234e191c22fc58d79d99a765f4278bb 75 Gene3D G3DSA:1.10.1740.70 2 75 1.2E-31 T 14-10-2018 Thimo_1382 5234e191c22fc58d79d99a765f4278bb 75 Pfam PF06150 ChaB 9 74 6.4E-27 T 14-10-2018 IPR009317 ChaB Thimo_1703 1669ad16761b8bffb2e40e4158c8afbf 306 Gene3D G3DSA:3.30.470.10 1 129 4.9E-39 T 14-10-2018 Thimo_1703 1669ad16761b8bffb2e40e4158c8afbf 306 Gene3D G3DSA:3.20.10.10 130 295 4.3E-55 T 14-10-2018 Thimo_1703 1669ad16761b8bffb2e40e4158c8afbf 306 SUPERFAMILY SSF56752 1 303 6.93E-104 T 14-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 Thimo_1703 1669ad16761b8bffb2e40e4158c8afbf 306 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 222 - T 14-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 Thimo_1703 1669ad16761b8bffb2e40e4158c8afbf 306 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 306 1.2E-130 T 14-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 Thimo_1703 1669ad16761b8bffb2e40e4158c8afbf 306 Pfam PF01063 Amino-transferase class IV 36 267 8.7E-56 T 14-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 Thimo_0294 c6806cf5b3174e34f901e88ce2ea3d98 255 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 182 199 - T 14-10-2018 IPR000540 Flagellar motor protein MotA, conserved site Thimo_0294 c6806cf5b3174e34f901e88ce2ea3d98 255 Pfam PF01618 MotA/TolQ/ExbB proton channel family 100 214 1.6E-25 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Thimo_2633 62eb2bfb5dc5886852e6c7cf36718cc2 357 Pfam PF01594 AI-2E family transporter 19 344 1.1E-70 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like Thimo_2650 ece95f527a0aed7634faf639adaedf72 216 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 12 207 6.8E-46 T 14-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Thimo_2650 ece95f527a0aed7634faf639adaedf72 216 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 10 212 41.086 T 14-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Thimo_2650 ece95f527a0aed7634faf639adaedf72 216 SUPERFAMILY SSF51366 10 209 1.54E-57 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Thimo_2650 ece95f527a0aed7634faf639adaedf72 216 Gene3D G3DSA:3.20.20.70 9 211 4.8E-65 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_3524 67bc04779162666e0d7804add034573f 337 Gene3D G3DSA:3.90.1200.10 94 334 6.2E-73 T 14-10-2018 Thimo_3524 67bc04779162666e0d7804add034573f 337 SUPERFAMILY SSF56112 8 302 1.75E-51 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_3524 67bc04779162666e0d7804add034573f 337 Gene3D G3DSA:3.30.200.20 4 93 3.1E-23 T 14-10-2018 Thimo_3524 67bc04779162666e0d7804add034573f 337 Pfam PF01636 Phosphotransferase enzyme family 26 244 7.8E-29 T 14-10-2018 IPR002575 Aminoglycoside phosphotransferase Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 102 3.3E-31 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 PRINTS PR00421 Thioredoxin family signature 29 38 1.2E-8 T 14-10-2018 Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 PRINTS PR00421 Thioredoxin family signature 21 29 1.2E-8 T 14-10-2018 Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 PRINTS PR00421 Thioredoxin family signature 68 79 1.2E-8 T 14-10-2018 Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 14-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 PIRSF PIRSF000077 1 104 1.4E-28 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 Pfam PF00085 Thioredoxin 3 102 5.4E-28 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 SUPERFAMILY SSF52833 2 103 7.28E-36 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_0845 57e8b4340eda3866e0134a068a43a303 123 Gene3D G3DSA:3.40.30.10 1 115 5.3E-33 T 14-10-2018 Thimo_0113 d473fc709d34d82cca4f5111bbab668c 162 Gene3D G3DSA:1.10.10.10 1 144 2.2E-51 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0113 d473fc709d34d82cca4f5111bbab668c 162 SUPERFAMILY SSF46785 2 132 2.04E-37 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0113 d473fc709d34d82cca4f5111bbab668c 162 Pfam PF02082 Transcriptional regulator 2 83 2.9E-27 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type Thimo_0113 d473fc709d34d82cca4f5111bbab668c 162 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 130 2.3E-46 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type Thimo_0499 d16833a3c4910687b7bb1ffd0f9ca393 182 SUPERFAMILY SSF52980 6 176 2.36E-26 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_0499 d16833a3c4910687b7bb1ffd0f9ca393 182 Gene3D G3DSA:3.90.1570.10 3 179 1.7E-21 T 14-10-2018 Thimo_0499 d16833a3c4910687b7bb1ffd0f9ca393 182 Pfam PF05685 Putative restriction endonuclease 11 164 3.7E-31 T 14-10-2018 IPR008538 Domain of unknown function DUF820 Thimo_1872 e9b8de2127a665ac0bae9328274ad430 241 Pfam PF13649 Methyltransferase domain 36 129 3.6E-15 T 14-10-2018 Thimo_1872 e9b8de2127a665ac0bae9328274ad430 241 Gene3D G3DSA:3.40.50.150 31 204 2.2E-25 T 14-10-2018 Thimo_1872 e9b8de2127a665ac0bae9328274ad430 241 SUPERFAMILY SSF53335 16 206 9.21E-29 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_1708 6256ff5dbc241ab9b137b5eae24dbe75 279 Pfam PF03618 Kinase/pyrophosphorylase 6 262 4.0E-72 T 14-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 Thimo_1708 6256ff5dbc241ab9b137b5eae24dbe75 279 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 3 274 67.937 T 14-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein Thimo_1539 7f4dadab904367d5bed91c7592d831f9 387 SUPERFAMILY SSF53300 113 301 2.23E-15 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1539 7f4dadab904367d5bed91c7592d831f9 387 SMART SM00327 109 298 2.1E-5 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_1539 7f4dadab904367d5bed91c7592d831f9 387 Pfam PF13519 von Willebrand factor type A domain 113 228 4.8E-10 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_1539 7f4dadab904367d5bed91c7592d831f9 387 Gene3D G3DSA:3.40.50.410 110 300 2.4E-19 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_1053 6bde628c8b89cd8132c83fb856e2cd3a 683 SUPERFAMILY SSF52833 7 133 1.4E-27 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_1053 6bde628c8b89cd8132c83fb856e2cd3a 683 Pfam PF03190 Protein of unknown function, DUF255 9 171 9.6E-71 T 14-10-2018 IPR004879 Domain of unknown function DUF255 Thimo_1053 6bde628c8b89cd8132c83fb856e2cd3a 683 SUPERFAMILY SSF48208 191 558 1.3E-72 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Thimo_1053 6bde628c8b89cd8132c83fb856e2cd3a 683 Gene3D G3DSA:3.40.30.10 7 178 8.5E-62 T 14-10-2018 Thimo_1053 6bde628c8b89cd8132c83fb856e2cd3a 683 PIRSF PIRSF006402 1 682 6.9E-211 T 14-10-2018 IPR024705 Spermatogenesis-associated protein 20 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 Pfam PF00186 Dihydrofolate reductase 15 172 4.8E-57 T 14-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 Gene3D G3DSA:3.40.430.10 13 177 6.4E-55 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 PRINTS PR00070 Dihydrofolate reductase signature 26 36 2.0E-15 T 14-10-2018 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 PRINTS PR00070 Dihydrofolate reductase signature 104 118 2.0E-15 T 14-10-2018 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 PRINTS PR00070 Dihydrofolate reductase signature 40 48 2.0E-15 T 14-10-2018 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 PRINTS PR00070 Dihydrofolate reductase signature 53 64 2.0E-15 T 14-10-2018 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 PIRSF PIRSF000194 10 175 9.0E-61 T 14-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 26 48 - T 14-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 Thimo_1078 2fd52101e9fe7b688190f23e608e8550 181 SUPERFAMILY SSF53597 14 173 6.68E-53 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Thimo_1962 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 SMART SM00935 11 167 2.8E-43 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Thimo_1962 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 Gene3D G3DSA:3.30.910.20 18 171 7.1E-30 T 14-10-2018 IPR024930 Skp domain superfamily Thimo_1962 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 SUPERFAMILY SSF111384 22 167 3.79E-30 T 14-10-2018 Thimo_1962 9db4043cdfdd9b9ef4a0cbb478fae7ab 171 Pfam PF03938 Outer membrane protein (OmpH-like) 8 166 4.8E-30 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Thimo_1187 6987aadc1395a9df62ccb9ecddfc6398 219 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 48 212 1.6E-57 T 14-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Thimo_1187 6987aadc1395a9df62ccb9ecddfc6398 219 Gene3D G3DSA:3.40.50.1360 8 212 5.6E-74 T 14-10-2018 Thimo_1187 6987aadc1395a9df62ccb9ecddfc6398 219 SUPERFAMILY SSF75445 126 197 4.06E-23 T 14-10-2018 Thimo_1187 6987aadc1395a9df62ccb9ecddfc6398 219 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 213 1.3E-63 T 14-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Thimo_1187 6987aadc1395a9df62ccb9ecddfc6398 219 Gene3D G3DSA:3.30.70.260 124 195 5.6E-74 T 14-10-2018 Thimo_1187 6987aadc1395a9df62ccb9ecddfc6398 219 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 216 32.553 T 14-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Thimo_1187 6987aadc1395a9df62ccb9ecddfc6398 219 SUPERFAMILY SSF100950 1 145 2.65E-42 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 SUPERFAMILY SSF56235 27 561 8.49E-158 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 Gene3D G3DSA:1.10.246.130 261 379 2.3E-19 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 37 555 8.1E-125 T 14-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 Gene3D G3DSA:3.60.20.40 380 560 3.1E-63 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 375 399 - T 14-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 245 261 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 440 455 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 463 480 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 275 294 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 147 166 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 399 417 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 57 82 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 129 147 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 375 393 1.1E-64 T 14-10-2018 Thimo_2580 cd89b0623720de7385f85b8a923cc194 569 Pfam PF01019 Gamma-glutamyltranspeptidase 50 557 2.7E-146 T 14-10-2018 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 SMART SM00028 69 102 5.5E-5 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 SMART SM00028 111 144 0.0061 T 14-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 Pfam PF13424 Tetratricopeptide repeat 68 143 1.0E-21 T 14-10-2018 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 Pfam PF13374 Tetratricopeptide repeat 152 183 4.2E-4 T 14-10-2018 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 SUPERFAMILY SSF48452 67 182 3.98E-25 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 PRINTS PR00381 Kinesin light chain signature 65 82 1.8E-9 T 14-10-2018 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 PRINTS PR00381 Kinesin light chain signature 109 129 1.8E-9 T 14-10-2018 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 PRINTS PR00381 Kinesin light chain signature 144 165 1.8E-9 T 14-10-2018 IPR002151 Kinesin light chain GO:0003777|GO:0005871 Reactome: R-HSA-2132295|Reactome: R-HSA-5625970|Reactome: R-HSA-6811434|Reactome: R-HSA-983189 Thimo_1730 fa2aa69b2ee64ae292717576465fbbd0 194 Gene3D G3DSA:1.25.40.10 18 194 2.5E-44 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2353 a11cdcf1cda5be96b9d8830ea517dce9 180 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 17 163 1.4E-29 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2353 a11cdcf1cda5be96b9d8830ea517dce9 180 SUPERFAMILY SSF56770 6 172 5.23E-39 T 14-10-2018 Thimo_2353 a11cdcf1cda5be96b9d8830ea517dce9 180 Gene3D G3DSA:3.40.50.700 5 178 1.6E-37 T 14-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Thimo_3762 93471ddb133aed4b3f19a882451801c4 639 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 116 540 3.0E-95 T 14-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 Thimo_3762 93471ddb133aed4b3f19a882451801c4 639 SUPERFAMILY SSF52540 82 536 6.37E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3762 93471ddb133aed4b3f19a882451801c4 639 Gene3D G3DSA:3.40.50.300 305 539 2.2E-42 T 14-10-2018 Thimo_2266 a8e7d2bc6ea61a86afbc35a7fa88de7e 98 Gene3D G3DSA:3.40.50.10580 2 91 4.8E-9 T 14-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2266 a8e7d2bc6ea61a86afbc35a7fa88de7e 98 Pfam PF01990 ATP synthase (F/14-kDa) subunit 6 79 1.2E-7 T 14-10-2018 IPR008218 ATPase, V1 complex, subunit F GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2266 a8e7d2bc6ea61a86afbc35a7fa88de7e 98 SUPERFAMILY SSF159468 6 96 1.07E-9 T 14-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_0463 6464632cac301210cac7615e8467ac9c 172 Gene3D G3DSA:1.10.60.30 27 100 3.3E-11 T 14-10-2018 Thimo_0463 6464632cac301210cac7615e8467ac9c 172 SUPERFAMILY SSF158710 28 168 3.66E-34 T 14-10-2018 IPR023153 PSPTO4464-like domain superfamily Thimo_0463 6464632cac301210cac7615e8467ac9c 172 Pfam PF04751 Protein of unknown function (DUF615) 16 166 4.8E-41 T 14-10-2018 IPR006839 Ribosome-associated, YjgA Thimo_0463 6464632cac301210cac7615e8467ac9c 172 PIRSF PIRSF016183 2 172 2.1E-40 T 14-10-2018 IPR006839 Ribosome-associated, YjgA Thimo_0463 6464632cac301210cac7615e8467ac9c 172 Gene3D G3DSA:1.10.60.30 102 171 9.7E-23 T 14-10-2018 Thimo_2267 5aaa34513af790bb63c4e6fe73e6e33a 116 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 63 89 1.4E-9 T 14-10-2018 IPR000245 V-ATPase proteolipid subunit GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2267 5aaa34513af790bb63c4e6fe73e6e33a 116 PRINTS PR00122 Vacuolar ATP synthase 16kDa subunit signature 90 113 1.4E-9 T 14-10-2018 IPR000245 V-ATPase proteolipid subunit GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2267 5aaa34513af790bb63c4e6fe73e6e33a 116 SUPERFAMILY SSF81333 47 113 3.66E-14 T 14-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Thimo_2267 5aaa34513af790bb63c4e6fe73e6e33a 116 Gene3D G3DSA:1.20.120.610 42 116 7.7E-15 T 14-10-2018 Thimo_2267 5aaa34513af790bb63c4e6fe73e6e33a 116 Pfam PF00137 ATP synthase subunit C 52 111 1.1E-15 T 14-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Thimo_0835 9f17805e475b294c7a0ae229c5586471 115 Pfam PF00173 Cytochrome b5-like Heme/Steroid binding domain 38 114 4.8E-14 T 14-10-2018 IPR001199 Cytochrome b5-like heme/steroid binding domain Thimo_0835 9f17805e475b294c7a0ae229c5586471 115 SUPERFAMILY SSF55856 34 113 7.59E-21 T 14-10-2018 IPR036400 Cytochrome b5-like heme/steroid binding domain superfamily Thimo_0835 9f17805e475b294c7a0ae229c5586471 115 SMART SM01117 37 114 2.3E-15 T 14-10-2018 IPR001199 Cytochrome b5-like heme/steroid binding domain Thimo_0835 9f17805e475b294c7a0ae229c5586471 115 Gene3D G3DSA:3.10.120.10 29 115 1.7E-27 T 14-10-2018 IPR036400 Cytochrome b5-like heme/steroid binding domain superfamily Thimo_2711 9d7ee0099f2fab628bc3f858579f4e52 398 TIGRFAM TIGR03187 DGQHR: DGQHR domain 11 284 6.7E-79 T 14-10-2018 IPR017601 DGQHR-containing domain Thimo_2711 9d7ee0099f2fab628bc3f858579f4e52 398 TIGRFAM TIGR03233 DNA_S_dndB: DNA sulfur modification protein DndB 7 354 1.6E-143 T 14-10-2018 IPR017642 DNA sulphur modification protein DndB Thimo_2711 9d7ee0099f2fab628bc3f858579f4e52 398 Pfam PF14072 DNA-sulfur modification-associated 9 342 3.3E-114 T 14-10-2018 IPR017642 DNA sulphur modification protein DndB Thimo_2641 91dd7903b89358c78f1069fd6e2b754f 271 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 7 262 1.5E-68 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Thimo_2641 91dd7903b89358c78f1069fd6e2b754f 271 Pfam PF02673 Bacitracin resistance protein BacA 7 264 4.2E-79 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Thimo_2641 91dd7903b89358c78f1069fd6e2b754f 271 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 269 17.205 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Thimo_3477 dae2d3418cab87aa0fc9f38e1e67fdbd 534 Gene3D G3DSA:3.30.450.20 136 221 3.8E-9 T 14-10-2018 Thimo_3477 dae2d3418cab87aa0fc9f38e1e67fdbd 534 Gene3D G3DSA:3.30.950.30 378 524 1.6E-19 T 14-10-2018 IPR038461 Schlafen, AAA domain superfamily Thimo_3477 dae2d3418cab87aa0fc9f38e1e67fdbd 534 Pfam PF04326 Putative DNA-binding domain 390 521 3.2E-16 T 14-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 Thimo_0340 e7e5f96b272b898681f53caff1562f32 130 Pfam PF11042 Protein of unknown function (DUF2750) 22 123 1.0E-31 T 14-10-2018 IPR021284 Protein of unknown function DUF2750 Thimo_3175 a1d6107668d8bede3bc5a66fafa1a5af 278 SMART SM01321 9 123 5.2E-40 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_3175 a1d6107668d8bede3bc5a66fafa1a5af 278 Pfam PF01797 Transposase IS200 like 13 120 3.5E-11 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_3175 a1d6107668d8bede3bc5a66fafa1a5af 278 Gene3D G3DSA:3.30.70.1290 1 162 1.6E-41 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_3175 a1d6107668d8bede3bc5a66fafa1a5af 278 SUPERFAMILY SSF143422 1 129 5.1E-25 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_2336 b5bdb452f9d412c0f1c186ae3cff9b20 155 Gene3D G3DSA:3.40.250.10 2 127 2.5E-27 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_2336 b5bdb452f9d412c0f1c186ae3cff9b20 155 SMART SM00450 19 124 1.4E-22 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_2336 b5bdb452f9d412c0f1c186ae3cff9b20 155 SUPERFAMILY SSF52821 6 131 8.77E-31 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Thimo_2336 b5bdb452f9d412c0f1c186ae3cff9b20 155 Pfam PF00581 Rhodanese-like domain 23 119 1.5E-14 T 14-10-2018 IPR001763 Rhodanese-like domain Thimo_0968 37804eb2d264a62cc13ea373abba3ccb 100 Pfam PF03795 YCII-related domain 2 94 4.7E-25 T 14-10-2018 IPR005545 YCII-related Thimo_0968 37804eb2d264a62cc13ea373abba3ccb 100 SUPERFAMILY SSF54909 2 97 1.16E-28 T 14-10-2018 IPR011008 Dimeric alpha-beta barrel Thimo_0968 37804eb2d264a62cc13ea373abba3ccb 100 Gene3D G3DSA:3.30.70.1060 1 98 3.9E-33 T 14-10-2018 Thimo_0723 f7f864068cf303b64e9e9288bdc78afd 270 Pfam PF01255 Putative undecaprenyl diphosphate synthase 32 252 7.4E-77 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Thimo_0723 f7f864068cf303b64e9e9288bdc78afd 270 SUPERFAMILY SSF64005 23 248 1.29E-82 T 14-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Thimo_0723 f7f864068cf303b64e9e9288bdc78afd 270 Gene3D G3DSA:3.40.1180.10 20 253 6.8E-91 T 14-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Thimo_0723 f7f864068cf303b64e9e9288bdc78afd 270 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 25 253 39.886 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Thimo_0723 f7f864068cf303b64e9e9288bdc78afd 270 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 198 215 - T 14-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 Thimo_0723 f7f864068cf303b64e9e9288bdc78afd 270 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 25 252 1.8E-87 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Thimo_2929 6bea5397993dcd020c6761312a0d6e76 601 Pfam PF13584 Oxygen tolerance 13 503 4.5E-103 T 14-10-2018 IPR025738 Aerotolerance-related protein BatD Thimo_3204 d5d4cae9978563baffbac477d3ff505e 317 Pfam PF00146 NADH dehydrogenase 13 305 3.5E-40 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0645 f250c0d7091905c5a0e99ab24c5b69b7 383 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 18 38 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0645 f250c0d7091905c5a0e99ab24c5b69b7 383 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 39 1.7E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_0645 f250c0d7091905c5a0e99ab24c5b69b7 383 SUPERFAMILY SSF54523 20 201 3.98E-7 T 14-10-2018 Thimo_0645 f250c0d7091905c5a0e99ab24c5b69b7 383 Pfam PF07963 Prokaryotic N-terminal methylation motif 14 39 9.7E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_1331 845d443868d0c8235068e8a7b5dc4515 197 Pfam PF09335 SNARE associated Golgi protein 38 157 1.4E-13 T 14-10-2018 IPR032816 SNARE associated Golgi protein Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 ProSitePatterns PS00517 Ribonuclease III family signature. 36 44 - T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 Pfam PF14622 Ribonuclease-III-like 17 135 1.4E-33 T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 SMART SM00535 19 147 3.5E-50 T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 SUPERFAMILY SSF54768 107 221 5.5E-24 T 14-10-2018 Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 Gene3D G3DSA:1.10.1520.10 4 144 4.0E-43 T 14-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 SUPERFAMILY SSF69065 3 156 2.44E-45 T 14-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 Gene3D G3DSA:3.30.160.20 152 223 1.5E-18 T 14-10-2018 Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 Pfam PF00035 Double-stranded RNA binding motif 154 221 3.5E-12 T 14-10-2018 IPR014720 Double-stranded RNA-binding domain Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 Hamap MF_00104 Ribonuclease 3 [rnc]. 7 218 29.534 T 14-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 SMART SM00358 154 222 1.6E-19 T 14-10-2018 IPR014720 Double-stranded RNA-binding domain Thimo_1830 14ace159717eff8b90afa4caaa935b7c 225 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 221 6.2E-70 T 14-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Thimo_0215 1d506877c03d02fc89f091bc54229e11 97 SUPERFAMILY SSF143120 3 63 3.66E-7 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_0215 1d506877c03d02fc89f091bc54229e11 97 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 48 7.9E-7 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_0215 1d506877c03d02fc89f091bc54229e11 97 Gene3D G3DSA:3.40.1620.10 2 44 3.5E-7 T 14-10-2018 Thimo_2398 f05e3d7251802775a1576e8c4199aa97 199 SMART SM00507 86 139 2.9E-12 T 14-10-2018 IPR003615 HNH nuclease Thimo_2398 f05e3d7251802775a1576e8c4199aa97 199 Gene3D G3DSA:3.30.40.60 63 167 2.2E-19 T 14-10-2018 Thimo_2398 f05e3d7251802775a1576e8c4199aa97 199 Pfam PF14279 HNH endonuclease 99 153 3.6E-13 T 14-10-2018 IPR029471 HNH endonuclease 5 Thimo_0760 bc5d90236d06df03036d537f4fe2d7ca 320 ProSitePatterns PS01058 SAICAR synthetase signature 2. 227 235 - T 14-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0760 bc5d90236d06df03036d537f4fe2d7ca 320 SUPERFAMILY SSF56104 26 315 3.24E-99 T 14-10-2018 Thimo_0760 bc5d90236d06df03036d537f4fe2d7ca 320 Pfam PF01259 SAICAR synthetase 37 290 7.6E-100 T 14-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0760 bc5d90236d06df03036d537f4fe2d7ca 320 Gene3D G3DSA:3.30.200.20 25 126 4.5E-30 T 14-10-2018 Thimo_0760 bc5d90236d06df03036d537f4fe2d7ca 320 Gene3D G3DSA:3.30.470.20 127 271 4.7E-60 T 14-10-2018 Thimo_0760 bc5d90236d06df03036d537f4fe2d7ca 320 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 34 315 25.055 T 14-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0760 bc5d90236d06df03036d537f4fe2d7ca 320 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 37 316 1.7E-76 T 14-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 Thimo_0760 bc5d90236d06df03036d537f4fe2d7ca 320 ProSitePatterns PS01057 SAICAR synthetase signature 1. 128 142 - T 14-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Thimo_0631 82591515a6f7d6abc9a8fb739a48716c 459 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 449 7.2E-91 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Thimo_0631 82591515a6f7d6abc9a8fb739a48716c 459 PIRSF PIRSF006066 4 459 4.5E-67 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Thimo_0631 82591515a6f7d6abc9a8fb739a48716c 459 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 455 8.0E-105 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Thimo_3413 4810a50f6ace901563ee60a1d223e594 1251 Pfam PF01555 DNA methylase 192 516 1.4E-28 T 14-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 Thimo_3413 4810a50f6ace901563ee60a1d223e594 1251 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 463 485 2.7E-15 T 14-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Thimo_3413 4810a50f6ace901563ee60a1d223e594 1251 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 254 273 2.7E-15 T 14-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Thimo_3413 4810a50f6ace901563ee60a1d223e594 1251 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 192 204 2.7E-15 T 14-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Thimo_3413 4810a50f6ace901563ee60a1d223e594 1251 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 486 500 2.7E-15 T 14-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Thimo_3413 4810a50f6ace901563ee60a1d223e594 1251 SUPERFAMILY SSF53335 165 528 2.09E-54 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3383 157ad2a17ade6202fa498ccf01bcda5c 427 Pfam PF00999 Sodium/hydrogen exchanger family 9 406 1.7E-59 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Thimo_2477 6c0e8428079b41f3be5b1296a6a4c6e4 47 Pfam PF08085 Entericidin EcnA/B family 20 40 2.4E-11 T 14-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 Thimo_2572 f57bad6ed4f31d202bb13b64deea0de9 145 Pfam PF03703 Bacterial PH domain 60 129 7.6E-11 T 14-10-2018 IPR005182 Domain of unknown function DUF304 Thimo_1995 df4e0b657af4535f4064a87c0fd44523 332 ProSitePatterns PS00211 ABC transporters family signature. 220 234 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1995 df4e0b657af4535f4064a87c0fd44523 332 Pfam PF00005 ABC transporter 100 247 1.3E-13 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1995 df4e0b657af4535f4064a87c0fd44523 332 Gene3D G3DSA:3.40.50.300 95 327 6.4E-26 T 14-10-2018 Thimo_1995 df4e0b657af4535f4064a87c0fd44523 332 SMART SM00382 107 291 2.1E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1995 df4e0b657af4535f4064a87c0fd44523 332 SUPERFAMILY SSF52540 85 295 8.74E-27 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2495 70e5af3fe9315cc1a16996f4af67e1cc 237 Pfam PF11736 Protein of unknown function (DUF3299) 89 234 8.2E-44 T 14-10-2018 IPR021727 Protein of unknown function DUF3299 Thimo_2495 70e5af3fe9315cc1a16996f4af67e1cc 237 Gene3D G3DSA:2.40.50.870 82 237 1.8E-50 T 14-10-2018 Thimo_3076 a83a6d113da48f9910a3701fbff95016 527 Pfam PF13440 Polysaccharide biosynthesis protein 68 359 1.7E-89 T 14-10-2018 Thimo_3076 a83a6d113da48f9910a3701fbff95016 527 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 361 500 2.4E-7 T 14-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Thimo_2481 1b3ab857274a4cb6a4e594f380ed3b48 359 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 27 359 7.6E-160 T 14-10-2018 IPR016936 Uncharacterised conserved protein UCP029693 Thimo_2481 1b3ab857274a4cb6a4e594f380ed3b48 359 PIRSF PIRSF029693 13 359 1.1E-128 T 14-10-2018 IPR016936 Uncharacterised conserved protein UCP029693 Thimo_2543 a8a26be31cab0e33ee524f1c474b59fd 109 Gene3D G3DSA:3.10.20.280 1 90 6.2E-32 T 14-10-2018 IPR037021 RnfH superfamily Thimo_2543 a8a26be31cab0e33ee524f1c474b59fd 109 SUPERFAMILY SSF54285 5 80 1.44E-23 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Thimo_2543 a8a26be31cab0e33ee524f1c474b59fd 109 Hamap MF_00460 Protein RnfH [rnfH]. 6 96 24.372 T 14-10-2018 IPR005346 RnfH protein Thimo_2543 a8a26be31cab0e33ee524f1c474b59fd 109 Pfam PF03658 RnfH family Ubiquitin 6 88 8.2E-34 T 14-10-2018 IPR005346 RnfH protein Thimo_1650 5b5388d246829e501f854bc5e48a765a 247 SUPERFAMILY SSF46626 18 210 1.53E-45 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1650 5b5388d246829e501f854bc5e48a765a 247 Gene3D G3DSA:1.10.760.10 25 212 2.8E-17 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_1650 5b5388d246829e501f854bc5e48a765a 247 Pfam PF02167 Cytochrome C1 family 34 245 6.8E-20 T 14-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 Thimo_1777 638fe4ce150e41e7d4ee8634006f8656 283 Gene3D G3DSA:3.30.1330.60 80 263 1.7E-26 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_1777 638fe4ce150e41e7d4ee8634006f8656 283 Pfam PF00691 OmpA family 129 254 3.4E-8 T 14-10-2018 IPR006665 OmpA-like domain Thimo_1777 638fe4ce150e41e7d4ee8634006f8656 283 SUPERFAMILY SSF103088 123 260 1.57E-14 T 14-10-2018 IPR036737 OmpA-like domain superfamily Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 Gene3D G3DSA:1.20.950.20 7 211 4.5E-76 T 14-10-2018 Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 Pfam PF01292 Prokaryotic cytochrome b561 16 221 7.3E-32 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 14 226 1.1E-72 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 SUPERFAMILY SSF81342 11 226 9.42E-44 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 213 226 3.5E-50 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 18 41 3.5E-50 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 182 204 3.5E-50 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 56 80 3.5E-50 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_3237 3c7d397ba8a2dd796edd3101d15cc805 230 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 135 154 3.5E-50 T 14-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Thimo_1364 5c9a9b46e1a36c17baa78691a60d4572 76 Pfam PF13488 Glycine zipper 31 70 2.2E-10 T 14-10-2018 IPR039567 Glycine zipper domain Thimo_0542 8e61eb587a5744fcc6f4bfde67c82c36 494 Gene3D G3DSA:3.30.1490.270 367 427 1.2E-22 T 14-10-2018 Thimo_0542 8e61eb587a5744fcc6f4bfde67c82c36 494 PIRSF PIRSF005522 15 494 6.0E-211 T 14-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 Thimo_0542 8e61eb587a5744fcc6f4bfde67c82c36 494 SUPERFAMILY SSF56059 40 485 3.54E-61 T 14-10-2018 Thimo_0542 8e61eb587a5744fcc6f4bfde67c82c36 494 Pfam PF14403 Circularly permuted ATP-grasp type 2 95 470 1.9E-160 T 14-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 Thimo_0542 8e61eb587a5744fcc6f4bfde67c82c36 494 Gene3D G3DSA:3.40.50.11290 234 330 6.9E-39 T 14-10-2018 Thimo_1655 7fe05f45e3dd845d95ebf4c5de4d6804 251 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 11 227 7.2E-38 T 14-10-2018 Thimo_1655 7fe05f45e3dd845d95ebf4c5de4d6804 251 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 5 245 24.803 T 14-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 Thimo_2036 8019f2347230b50aa398dc2b24956d32 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.0E-43 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Thimo_2036 8019f2347230b50aa398dc2b24956d32 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 75 1.0E-30 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Thimo_2036 8019f2347230b50aa398dc2b24956d32 90 PIRSF PIRSF029827 1 90 5.5E-39 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Thimo_2036 8019f2347230b50aa398dc2b24956d32 90 Gene3D G3DSA:1.10.3880.10 1 90 2.3E-41 T 14-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 Thimo_2036 8019f2347230b50aa398dc2b24956d32 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.404 T 14-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Thimo_2036 8019f2347230b50aa398dc2b24956d32 90 SUPERFAMILY SSF111148 1 89 7.85E-40 T 14-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 Thimo_0819 657c6c868a3f60fdd36484eac82cf6af 153 SUPERFAMILY SSF55729 2 153 5.85E-28 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_0819 657c6c868a3f60fdd36484eac82cf6af 153 Pfam PF13673 Acetyltransferase (GNAT) domain 28 151 1.9E-15 T 14-10-2018 IPR000182 GNAT domain Thimo_0819 657c6c868a3f60fdd36484eac82cf6af 153 Gene3D G3DSA:3.40.630.30 1 153 1.2E-34 T 14-10-2018 Thimo_2994 e2d148862d79fa05c99007588bd52707 64 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 23 41 - T 14-10-2018 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 Thimo_2994 e2d148862d79fa05c99007588bd52707 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 5.3E-15 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_2994 e2d148862d79fa05c99007588bd52707 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 7.1E-8 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2994 e2d148862d79fa05c99007588bd52707 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 7.1E-8 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2994 e2d148862d79fa05c99007588bd52707 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 7.1E-8 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_2994 e2d148862d79fa05c99007588bd52707 64 SUPERFAMILY SSF56918 1 47 2.15E-14 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2994 e2d148862d79fa05c99007588bd52707 64 Gene3D G3DSA:4.10.220.20 1 55 1.9E-19 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_3551 e1f1eb3879175d113368e3758a3e3a54 124 Pfam PF01890 Cobalamin synthesis G C-terminus 3 119 2.5E-25 T 14-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 Thimo_3551 e1f1eb3879175d113368e3758a3e3a54 124 SUPERFAMILY SSF159664 2 121 3.92E-31 T 14-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 Thimo_3551 e1f1eb3879175d113368e3758a3e3a54 124 Gene3D G3DSA:3.30.420.180 1 123 4.3E-35 T 14-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 Thimo_0274 9131a44f2ac636c63fcabc29f2179d99 148 Pfam PF02050 Flagellar FliJ protein 20 138 2.9E-19 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Thimo_0274 9131a44f2ac636c63fcabc29f2179d99 148 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 138 4.3E-15 T 14-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Thimo_1144 6f07249005c85eb9d669469f4ec5d60d 397 Pfam PF01389 OmpA-like transmembrane domain 297 364 3.4E-4 T 14-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 Thimo_1144 6f07249005c85eb9d669469f4ec5d60d 397 SUPERFAMILY SSF56935 30 397 4.03E-24 T 14-10-2018 Thimo_1144 6f07249005c85eb9d669469f4ec5d60d 397 Gene3D G3DSA:2.40.160.10 167 388 3.0E-6 T 14-10-2018 IPR023614 Porin domain superfamily Thimo_3254 910b6a9062ea99c601c8332c31a84cee 314 TIGRFAM TIGR02662 dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase 22 309 1.3E-118 T 14-10-2018 IPR013479 ADP-ribosyl-dinitrogen reductase hydrolase Thimo_3254 910b6a9062ea99c601c8332c31a84cee 314 Pfam PF03747 ADP-ribosylglycohydrolase 28 284 2.7E-55 T 14-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 Thimo_3254 910b6a9062ea99c601c8332c31a84cee 314 SUPERFAMILY SSF101478 24 292 1.7E-66 T 14-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily Thimo_3254 910b6a9062ea99c601c8332c31a84cee 314 Gene3D G3DSA:1.10.4080.10 18 314 9.5E-88 T 14-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 Gene3D G3DSA:3.40.50.12160 1 124 5.8E-22 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 138 158 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 SMART SM00729 134 349 2.7E-50 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 Pfam PF04055 Radical SAM superfamily 139 307 1.7E-21 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 Pfam PF00919 Uncharacterized protein family UPF0004 2 97 1.8E-22 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 SUPERFAMILY SSF102114 130 351 4.19E-52 T 14-10-2018 Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 5 410 2.3E-115 T 14-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 2 414 1.4E-107 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Thimo_3443 eb7b40505cbd62dae65cb709889f508e 428 Gene3D G3DSA:3.80.30.20 132 363 2.4E-71 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Thimo_1040 5187c686780c1d602ad95f3848740a5b 274 PIRSF PIRSF016557 1 244 1.9E-57 T 14-10-2018 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 Thimo_1040 5187c686780c1d602ad95f3848740a5b 274 SUPERFAMILY SSF89550 2 201 6.28E-12 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Thimo_1040 5187c686780c1d602ad95f3848740a5b 274 Gene3D G3DSA:3.20.20.140 1 248 2.3E-71 T 14-10-2018 Thimo_3358 86fbf0642fc70a4d690dda6b13113c54 145 Gene3D G3DSA:3.30.460.80 3 95 6.7E-7 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3358 86fbf0642fc70a4d690dda6b13113c54 145 SUPERFAMILY SSF143243 7 94 5.1E-13 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3358 86fbf0642fc70a4d690dda6b13113c54 145 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 15 92 1.2E-7 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0373 0ab49b67d42aaa343cf9c2406cae1a6b 247 Gene3D G3DSA:1.10.530.70 89 198 1.6E-10 T 14-10-2018 Thimo_0373 0ab49b67d42aaa343cf9c2406cae1a6b 247 Pfam PF00182 Chitinase class I 154 187 3.1E-6 T 14-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 Thimo_0373 0ab49b67d42aaa343cf9c2406cae1a6b 247 SUPERFAMILY SSF53955 112 234 2.22E-16 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_3475 33d37a0d1bc2fad539a61b7c213ff764 250 Pfam PF08808 RES domain 62 211 1.6E-26 T 14-10-2018 IPR014914 RES domain Thimo_3475 33d37a0d1bc2fad539a61b7c213ff764 250 SMART SM00953 70 207 3.6E-25 T 14-10-2018 IPR014914 RES domain Thimo_0597 7aa26fe444c89fee849d7d83a466f824 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 237 261 5.0E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0597 7aa26fe444c89fee849d7d83a466f824 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 138 157 5.0E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0597 7aa26fe444c89fee849d7d83a466f824 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 168 192 5.0E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0597 7aa26fe444c89fee849d7d83a466f824 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 5.0E-38 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0597 7aa26fe444c89fee849d7d83a466f824 504 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 8 498 1.4E-186 T 14-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0597 7aa26fe444c89fee849d7d83a466f824 504 Pfam PF00361 Proton-conducting membrane transporter 133 429 5.4E-74 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0597 7aa26fe444c89fee849d7d83a466f824 504 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 74 123 2.1E-6 T 14-10-2018 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1785 787747a5ba860cf40818cf626e348c0a 86 Pfam PF02609 Exonuclease VII small subunit 18 68 2.8E-19 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Thimo_1785 787747a5ba860cf40818cf626e348c0a 86 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 27 57 6.0E-5 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Thimo_1785 787747a5ba860cf40818cf626e348c0a 86 PIRSF PIRSF006488 3 85 8.9E-23 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Thimo_1785 787747a5ba860cf40818cf626e348c0a 86 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 17 77 15.884 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Thimo_1785 787747a5ba860cf40818cf626e348c0a 86 SUPERFAMILY SSF116842 12 77 7.98E-20 T 14-10-2018 Thimo_1785 787747a5ba860cf40818cf626e348c0a 86 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 17 73 5.8E-21 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Thimo_1785 787747a5ba860cf40818cf626e348c0a 86 Gene3D G3DSA:1.10.287.1040 11 86 8.0E-25 T 14-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 Thimo_0753 25c24cdf0ddb1e9ed13b3d3969209047 316 Gene3D G3DSA:1.10.510.10 118 287 6.4E-44 T 14-10-2018 Thimo_0753 25c24cdf0ddb1e9ed13b3d3969209047 316 SMART SM00220 17 290 3.8E-15 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_0753 25c24cdf0ddb1e9ed13b3d3969209047 316 SUPERFAMILY SSF56112 12 299 5.45E-47 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_0753 25c24cdf0ddb1e9ed13b3d3969209047 316 Pfam PF00069 Protein kinase domain 17 243 3.6E-27 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_0753 25c24cdf0ddb1e9ed13b3d3969209047 316 Gene3D G3DSA:3.30.200.20 5 117 6.4E-44 T 14-10-2018 Thimo_0753 25c24cdf0ddb1e9ed13b3d3969209047 316 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 23 46 - T 14-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 Thimo_2753 9d0be98890d4685bdc8c85779228e56c 158 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 4 149 4.4E-56 T 14-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 Thimo_2753 9d0be98890d4685bdc8c85779228e56c 158 Pfam PF02470 MlaD protein 39 118 1.4E-23 T 14-10-2018 IPR003399 Mce/MlaD Thimo_1981 2bb8859e7266dc5e6b376bdcb15c8f4f 260 SUPERFAMILY SSF88713 32 214 1.88E-36 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Thimo_1981 2bb8859e7266dc5e6b376bdcb15c8f4f 260 Pfam PF01522 Polysaccharide deacetylase 65 201 2.6E-27 T 14-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Thimo_1981 2bb8859e7266dc5e6b376bdcb15c8f4f 260 Gene3D G3DSA:3.20.20.370 2 232 1.8E-55 T 14-10-2018 Thimo_1127 768bf23835966a7e1d250127c0c12673 331 Pfam PF01136 Peptidase family U32 76 330 1.5E-67 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Thimo_1127 768bf23835966a7e1d250127c0c12673 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Thimo_1555 a5d11de36d36084f7e11ac91bf7e388f 259 Gene3D G3DSA:3.60.10.10 12 255 1.0E-36 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Thimo_1555 a5d11de36d36084f7e11ac91bf7e388f 259 SUPERFAMILY SSF56219 12 250 1.92E-34 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Thimo_1555 a5d11de36d36084f7e11ac91bf7e388f 259 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 17 241 8.3E-18 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Thimo_2375 76b5b55958ecccd9bee928279041dfca 212 Pfam PF02223 Thymidylate kinase 10 190 7.7E-47 T 14-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 Thimo_2375 76b5b55958ecccd9bee928279041dfca 212 Gene3D G3DSA:3.40.50.300 2 207 2.4E-65 T 14-10-2018 Thimo_2375 76b5b55958ecccd9bee928279041dfca 212 Hamap MF_00165 Thymidylate kinase [tmk]. 6 207 29.962 T 14-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Thimo_2375 76b5b55958ecccd9bee928279041dfca 212 SUPERFAMILY SSF52540 4 205 1.98E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2375 76b5b55958ecccd9bee928279041dfca 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 4 190 5.2E-50 T 14-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Thimo_2526 42ff715c400d6772f3189d85af9aadd2 287 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 40 287 3.0E-122 T 14-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 Thimo_2526 42ff715c400d6772f3189d85af9aadd2 287 Gene3D G3DSA:3.40.50.300 40 285 7.0E-63 T 14-10-2018 Thimo_2526 42ff715c400d6772f3189d85af9aadd2 287 SMART SM00382 64 259 1.9E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2526 42ff715c400d6772f3189d85af9aadd2 287 ProSitePatterns PS00211 ABC transporters family signature. 184 198 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_2526 42ff715c400d6772f3189d85af9aadd2 287 Pfam PF00005 ABC transporter 56 211 6.4E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2526 42ff715c400d6772f3189d85af9aadd2 287 SUPERFAMILY SSF52540 38 275 4.52E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1577 2f3869e1190c660aaf274aa856c09ed3 286 SUPERFAMILY SSF52540 14 193 5.45E-7 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3751 515af176aa87f0ff2bc1a93df4fb145a 115 Pfam PF04956 TrbC/VIRB2 family 12 96 1.7E-13 T 14-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 Thimo_2051 59378ba2e4ad8201e5409399bada7f44 69 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 1.6E-12 T 14-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Thimo_2051 59378ba2e4ad8201e5409399bada7f44 69 Gene3D G3DSA:1.10.10.1100 1 56 2.0E-20 T 14-10-2018 Thimo_2100 a313391453f75680721143073f1c1ec2 219 Gene3D G3DSA:1.25.40.10 103 214 1.9E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2100 a313391453f75680721143073f1c1ec2 219 SUPERFAMILY SSF48452 114 212 2.8E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2100 a313391453f75680721143073f1c1ec2 219 Pfam PF14559 Tetratricopeptide repeat 131 174 9.7E-6 T 14-10-2018 Thimo_2262 19a7b8fc2655c658844da6ef9c3973c1 210 Pfam PF01813 ATP synthase subunit D 14 203 8.2E-25 T 14-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_2432 cc0a3860e4a65eaeb056cabc34278c2c 180 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 28 173 7.8E-50 T 14-10-2018 IPR008136 CinA, C-terminal Thimo_2432 cc0a3860e4a65eaeb056cabc34278c2c 180 SUPERFAMILY SSF142433 21 176 1.44E-55 T 14-10-2018 IPR036653 CinA-like, C-terminal Thimo_2432 cc0a3860e4a65eaeb056cabc34278c2c 180 Pfam PF02464 Competence-damaged protein 24 175 4.2E-59 T 14-10-2018 IPR008136 CinA, C-terminal Thimo_2432 cc0a3860e4a65eaeb056cabc34278c2c 180 Gene3D G3DSA:3.90.950.20 12 177 8.9E-62 T 14-10-2018 IPR036653 CinA-like, C-terminal Thimo_1134 20f606a1ea75d165a2765a43c645bda5 317 Pfam PF03547 Membrane transport protein 8 131 7.1E-12 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Thimo_1134 20f606a1ea75d165a2765a43c645bda5 317 Pfam PF03547 Membrane transport protein 168 311 3.0E-8 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Thimo_0936 6849102f3e5c88ba46be99f2e1b95d5d 137 Pfam PF09945 Predicted membrane protein (DUF2177) 7 128 4.9E-45 T 14-10-2018 IPR018687 Protein of unknown function DUF2177, membrane Thimo_0204 f0a2435727251ad335271c50a02db39b 261 SUPERFAMILY SSF52200 3 107 1.23E-22 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_0204 f0a2435727251ad335271c50a02db39b 261 SMART SM00255 6 121 0.0014 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_0204 f0a2435727251ad335271c50a02db39b 261 Gene3D G3DSA:3.40.50.10140 2 115 2.7E-25 T 14-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily Thimo_0204 f0a2435727251ad335271c50a02db39b 261 Pfam PF13676 TIR domain 9 112 1.5E-18 T 14-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Thimo_1200 0112d959e0637b8faa05a70329cd16a8 182 SUPERFAMILY SSF50324 3 174 5.23E-66 T 14-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Thimo_1200 0112d959e0637b8faa05a70329cd16a8 182 Pfam PF00719 Inorganic pyrophosphatase 18 172 7.1E-54 T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Thimo_1200 0112d959e0637b8faa05a70329cd16a8 182 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.868 T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Thimo_1200 0112d959e0637b8faa05a70329cd16a8 182 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 14-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Thimo_1200 0112d959e0637b8faa05a70329cd16a8 182 Gene3D G3DSA:3.90.80.10 1 175 6.1E-69 T 14-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Thimo_2510 281a0876e4f6d2f3236dbdc7789ba294 290 SUPERFAMILY SSF81345 8 262 4.45E-34 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Thimo_2510 281a0876e4f6d2f3236dbdc7789ba294 290 Pfam PF00950 ABC 3 transport family 10 264 1.2E-69 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Thimo_0684 09c6a3082712a69c6a25eb34309c44c9 137 Pfam PF02036 SCP-2 sterol transfer family 12 104 5.2E-5 T 14-10-2018 IPR003033 SCP2 sterol-binding domain Thimo_0684 09c6a3082712a69c6a25eb34309c44c9 137 Gene3D G3DSA:3.30.1050.10 2 128 3.1E-11 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Thimo_0684 09c6a3082712a69c6a25eb34309c44c9 137 SUPERFAMILY SSF55718 1 133 1.81E-24 T 14-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Thimo_3009 ed12775342535d4e4364189b50f6598a 513 Gene3D G3DSA:3.50.50.60 3 94 2.1E-22 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3009 ed12775342535d4e4364189b50f6598a 513 Gene3D G3DSA:3.50.50.60 207 321 2.1E-17 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3009 ed12775342535d4e4364189b50f6598a 513 SUPERFAMILY SSF51905 3 495 2.03E-56 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_3009 ed12775342535d4e4364189b50f6598a 513 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 6 498 1.9E-86 T 14-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 Thimo_3009 ed12775342535d4e4364189b50f6598a 513 Pfam PF01593 Flavin containing amine oxidoreductase 14 492 5.2E-17 T 14-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Thimo_0494 886c799a238c204f932c043107d6b5d5 116 Pfam PF04071 Cysteine-rich small domain 13 74 1.7E-11 T 14-10-2018 IPR007212 Cysteine-rich small domain Thimo_1006 09c3df7dd9ec8ed19f2bc05b9533a32c 290 Pfam PF00535 Glycosyl transferase family 2 9 133 3.5E-10 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Thimo_1006 09c3df7dd9ec8ed19f2bc05b9533a32c 290 Gene3D G3DSA:3.90.550.10 1 152 1.7E-15 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1006 09c3df7dd9ec8ed19f2bc05b9533a32c 290 SUPERFAMILY SSF53448 5 142 9.14E-18 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0343 0b4f062b030f6d8ba993860de30207b2 175 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 4.9E-62 T 14-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Thimo_0343 0b4f062b030f6d8ba993860de30207b2 175 Pfam PF03477 ATP cone domain 50 136 3.3E-15 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Thimo_0343 0b4f062b030f6d8ba993860de30207b2 175 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 85.856 T 14-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Thimo_0207 d74c8372cecdcdd51bce02dcc98d129a 558 Pfam PF13584 Oxygen tolerance 42 485 1.9E-61 T 14-10-2018 IPR025738 Aerotolerance-related protein BatD Thimo_2964 925776205ed117b4b28d64d9bb793c4a 372 Gene3D G3DSA:3.30.310.170 254 372 4.6E-11 T 14-10-2018 Thimo_2964 925776205ed117b4b28d64d9bb793c4a 372 Pfam PF06804 NlpB/DapX lipoprotein 29 369 2.1E-41 T 14-10-2018 IPR010653 NlpB/DapX lipoprotein Thimo_0068 c26c70729ab3636fae0f01c874106d8e 667 SUPERFAMILY SSF48317 249 440 1.22E-19 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Thimo_0068 c26c70729ab3636fae0f01c874106d8e 667 Pfam PF14067 LssY C-terminus 497 611 3.4E-12 T 14-10-2018 IPR025902 LssY-like C-terminal domain Thimo_0068 c26c70729ab3636fae0f01c874106d8e 667 Gene3D G3DSA:1.20.144.10 347 449 3.1E-9 T 14-10-2018 Thimo_0068 c26c70729ab3636fae0f01c874106d8e 667 Pfam PF09335 SNARE associated Golgi protein 39 162 4.7E-16 T 14-10-2018 IPR032816 SNARE associated Golgi protein Thimo_1372 389efed3df3f95ffee44132853f11dbc 192 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 49 181 1.0E-59 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Thimo_1372 389efed3df3f95ffee44132853f11dbc 192 SUPERFAMILY SSF51316 49 189 6.28E-58 T 14-10-2018 IPR011057 Mss4-like superfamily Thimo_1372 389efed3df3f95ffee44132853f11dbc 192 Gene3D G3DSA:2.170.150.20 43 190 6.7E-56 T 14-10-2018 Thimo_1372 389efed3df3f95ffee44132853f11dbc 192 Pfam PF01641 SelR domain 54 172 8.3E-47 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Thimo_1372 389efed3df3f95ffee44132853f11dbc 192 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 41 173 36.034 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Thimo_3142 9834fc82d017033a4b880cb996a24f56 246 SUPERFAMILY SSF46894 138 242 3.4E-19 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_3142 9834fc82d017033a4b880cb996a24f56 246 SMART SM00448 16 126 1.3E-36 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3142 9834fc82d017033a4b880cb996a24f56 246 Gene3D G3DSA:3.40.50.2300 5 139 6.2E-36 T 14-10-2018 Thimo_3142 9834fc82d017033a4b880cb996a24f56 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 170 242 5.6E-17 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3142 9834fc82d017033a4b880cb996a24f56 246 Pfam PF00072 Response regulator receiver domain 18 126 5.8E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_3142 9834fc82d017033a4b880cb996a24f56 246 Gene3D G3DSA:1.10.10.10 140 244 2.1E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_3142 9834fc82d017033a4b880cb996a24f56 246 SUPERFAMILY SSF52172 13 141 4.27E-40 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_3142 9834fc82d017033a4b880cb996a24f56 246 SMART SM00862 166 242 7.1E-17 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Thimo_3224 020ac0c9742f0c71df42c815a252ea2c 663 Gene3D G3DSA:3.40.50.10810 145 358 6.6E-50 T 14-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Thimo_3224 020ac0c9742f0c71df42c815a252ea2c 663 SUPERFAMILY SSF52540 362 474 2.49E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3224 020ac0c9742f0c71df42c815a252ea2c 663 SUPERFAMILY SSF52540 153 345 4.15E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3224 020ac0c9742f0c71df42c815a252ea2c 663 Pfam PF00176 SNF2 family N-terminal domain 176 398 5.1E-29 T 14-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Thimo_3224 020ac0c9742f0c71df42c815a252ea2c 663 Gene3D G3DSA:3.40.50.300 365 470 2.5E-6 T 14-10-2018 Thimo_3224 020ac0c9742f0c71df42c815a252ea2c 663 Gene3D G3DSA:1.20.120.850 379 436 2.5E-6 T 14-10-2018 Thimo_3224 020ac0c9742f0c71df42c815a252ea2c 663 SMART SM00487 154 342 4.1E-24 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Thimo_3214 ba28374167c208876291b6a3a3d618eb 507 Pfam PF01936 NYN domain 2 161 4.5E-21 T 14-10-2018 IPR021139 NYN domain, limkain-b1-type Thimo_3214 ba28374167c208876291b6a3a3d618eb 507 Gene3D G3DSA:3.40.50.1010 1 167 2.8E-13 T 14-10-2018 Thimo_0926 02b05cad7062e98caae241963febcfb6 170 Pfam PF13511 Domain of unknown function (DUF4124) 13 50 2.0E-11 T 14-10-2018 IPR025392 Domain of unknown function DUF4124 Thimo_1412 6615e670205d2d75786aa76024455a87 128 Pfam PF12616 Protein of unknown function (DUF3775) 53 124 1.2E-25 T 14-10-2018 IPR022254 Protein of unknown function DUF3775 Thimo_1141 44fe932c1d54bed561c0a90724889801 511 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 4 468 20.303 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 4 502 5.1E-141 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 PIRSF PIRSF002869 1 509 3.3E-164 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 158 179 2.5E-78 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 260 286 2.5E-78 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 34 53 2.5E-78 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 53 69 2.5E-78 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 358 377 2.5E-78 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 410 427 2.5E-78 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 PRINTS PR01806 Virulence factor MviN signature 134 158 2.5E-78 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1141 44fe932c1d54bed561c0a90724889801 511 Pfam PF03023 MviN-like protein 29 470 2.3E-139 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Thimo_1680 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 Gene3D G3DSA:3.40.30.10 1 166 1.1E-45 T 14-10-2018 Thimo_1680 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 14-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 Thimo_1680 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 Pfam PF08534 Redoxin 20 162 8.6E-25 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Thimo_1680 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 Hamap MF_00269 Thiol peroxidase [tpx]. 3 166 37.905 T 14-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 Thimo_1680 67bc30bbd3ec53897d14bbc9c9d7eeaf 166 SUPERFAMILY SSF52833 1 163 1.87E-39 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_3579 d077ba0c14a7d0f13bd2c36330557455 355 Gene3D G3DSA:3.40.50.150 70 216 8.5E-7 T 14-10-2018 Thimo_3034 e467ae32e2a598b69510a186e0e27e95 86 Pfam PF01726 LexA DNA binding domain 4 64 2.9E-6 T 14-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 Thimo_3034 e467ae32e2a598b69510a186e0e27e95 86 SUPERFAMILY SSF46785 5 69 2.26E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_3034 e467ae32e2a598b69510a186e0e27e95 86 Gene3D G3DSA:1.10.10.10 4 68 8.3E-12 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1311 6c85c857980caf51acc95c3b7c48d335 129 SUPERFAMILY SSF52402 2 122 9.21E-22 T 14-10-2018 Thimo_1311 6c85c857980caf51acc95c3b7c48d335 129 Gene3D G3DSA:3.40.50.620 1 125 6.4E-22 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1311 6c85c857980caf51acc95c3b7c48d335 129 PRINTS PR01438 Universal stress protein signature 101 123 1.7E-6 T 14-10-2018 IPR006015 Universal stress protein A Thimo_1311 6c85c857980caf51acc95c3b7c48d335 129 PRINTS PR01438 Universal stress protein signature 83 95 1.7E-6 T 14-10-2018 IPR006015 Universal stress protein A Thimo_1311 6c85c857980caf51acc95c3b7c48d335 129 Pfam PF00582 Universal stress protein family 2 121 5.8E-16 T 14-10-2018 IPR006016 UspA Thimo_2090 1cf953374b26ee11680c843c1bd23f2f 320 Gene3D G3DSA:1.25.10.110 102 192 2.8E-6 T 14-10-2018 Thimo_2090 1cf953374b26ee11680c843c1bd23f2f 320 SUPERFAMILY SSF48371 15 234 2.97E-11 T 14-10-2018 IPR016024 Armadillo-type fold Thimo_2042 cd899ca724f13996a93a43f25dc9c80f 265 Pfam PF05690 Thiazole biosynthesis protein ThiG 13 259 8.2E-110 T 14-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 Thimo_2042 cd899ca724f13996a93a43f25dc9c80f 265 SUPERFAMILY SSF110399 9 250 4.19E-87 T 14-10-2018 Thimo_2042 cd899ca724f13996a93a43f25dc9c80f 265 Gene3D G3DSA:3.20.20.70 1 264 1.1E-117 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_2042 cd899ca724f13996a93a43f25dc9c80f 265 Hamap MF_00443 Thiazole synthase [thiG]. 10 265 42.529 T 14-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 Thimo_3668 f141e95ac0f64af87ae6717bc0e89a9c 184 Pfam PF01965 DJ-1/PfpI family 3 164 1.1E-44 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Thimo_3668 f141e95ac0f64af87ae6717bc0e89a9c 184 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 3 177 1.5E-51 T 14-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 Thimo_3668 f141e95ac0f64af87ae6717bc0e89a9c 184 SUPERFAMILY SSF52317 1 181 2.62E-50 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_3668 f141e95ac0f64af87ae6717bc0e89a9c 184 Gene3D G3DSA:3.40.50.880 1 182 1.9E-52 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Thimo_1486 59421cef5a8799a50fd0a1739221a0ab 459 SUPERFAMILY SSF52540 79 355 4.65E-79 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1486 59421cef5a8799a50fd0a1739221a0ab 459 SUPERFAMILY SSF47917 363 417 2.56E-6 T 14-10-2018 Thimo_1486 59421cef5a8799a50fd0a1739221a0ab 459 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 350 7.1E-64 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_1486 59421cef5a8799a50fd0a1739221a0ab 459 Gene3D G3DSA:3.40.50.12240 1 459 3.7E-165 T 14-10-2018 Thimo_1486 59421cef5a8799a50fd0a1739221a0ab 459 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 3 459 52.884 T 14-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1486 59421cef5a8799a50fd0a1739221a0ab 459 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 341 350 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Thimo_3486 1666b75fe69ea7541da61f0cfdfe71e9 297 Gene3D G3DSA:3.40.50.150 13 261 2.0E-28 T 14-10-2018 Thimo_3486 1666b75fe69ea7541da61f0cfdfe71e9 297 SUPERFAMILY SSF53335 64 226 7.15E-24 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3486 1666b75fe69ea7541da61f0cfdfe71e9 297 Pfam PF08241 Methyltransferase domain 116 205 1.8E-14 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_1845 3e902fabf6d34ada19d4f145f179af19 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 1.8E-50 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Thimo_1845 3e902fabf6d34ada19d4f145f179af19 145 SUPERFAMILY SSF69500 1 144 8.63E-51 T 14-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Thimo_1845 3e902fabf6d34ada19d4f145f179af19 145 Gene3D G3DSA:3.50.80.10 1 145 4.5E-50 T 14-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Thimo_1845 3e902fabf6d34ada19d4f145f179af19 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 32.33 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Thimo_1845 3e902fabf6d34ada19d4f145f179af19 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 4 143 5.2E-49 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Thimo_3054 5af7e72acbdb5885ca67f6d01a30dfcc 296 SUPERFAMILY SSF53448 2 288 2.6E-88 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3054 5af7e72acbdb5885ca67f6d01a30dfcc 296 Pfam PF00483 Nucleotidyl transferase 4 239 1.0E-65 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Thimo_3054 5af7e72acbdb5885ca67f6d01a30dfcc 296 Gene3D G3DSA:3.90.550.10 1 295 1.4E-81 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_3054 5af7e72acbdb5885ca67f6d01a30dfcc 296 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 4 288 3.1E-148 T 14-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Thimo_2354 1d308131a782906c475e3820e38c36c0 475 Gene3D G3DSA:1.10.645.10 1 450 2.1E-100 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_2354 1d308131a782906c475e3820e38c36c0 475 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 441 450 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Thimo_2354 1d308131a782906c475e3820e38c36c0 475 Pfam PF00374 Nickel-dependent hydrogenase 152 450 1.6E-12 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Thimo_2354 1d308131a782906c475e3820e38c36c0 475 Pfam PF00374 Nickel-dependent hydrogenase 40 116 6.1E-18 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Thimo_2354 1d308131a782906c475e3820e38c36c0 475 SUPERFAMILY SSF56762 4 450 1.31E-132 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0846 d4e1435239b286ddfb4ea631a519bd62 174 Pfam PF06853 Protein of unknown function (DUF1249) 34 148 1.6E-27 T 14-10-2018 IPR009659 Protein of unknown function DUF1249 Thimo_1501 54d51a43f5b2368e066b1e59ed99c62e 710 SUPERFAMILY SSF52151 307 555 2.54E-8 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Thimo_0685 3900132b5931ed0cd6ded329c7e8ddf2 507 Gene3D G3DSA:1.10.3210.10 316 506 8.0E-65 T 14-10-2018 Thimo_0685 3900132b5931ed0cd6ded329c7e8ddf2 507 Gene3D G3DSA:3.30.420.150 122 301 2.7E-81 T 14-10-2018 Thimo_0685 3900132b5931ed0cd6ded329c7e8ddf2 507 SUPERFAMILY SSF53067 18 138 2.78E-33 T 14-10-2018 Thimo_0685 3900132b5931ed0cd6ded329c7e8ddf2 507 SUPERFAMILY SSF53067 145 316 2.33E-43 T 14-10-2018 Thimo_0685 3900132b5931ed0cd6ded329c7e8ddf2 507 Pfam PF02541 Ppx/GppA phosphatase family 31 313 1.1E-67 T 14-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Thimo_0685 3900132b5931ed0cd6ded329c7e8ddf2 507 PIRSF PIRSF001267 9 507 2.4E-185 T 14-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 Thimo_0685 3900132b5931ed0cd6ded329c7e8ddf2 507 SUPERFAMILY SSF109604 319 500 4.93E-52 T 14-10-2018 Thimo_0685 3900132b5931ed0cd6ded329c7e8ddf2 507 Gene3D G3DSA:3.30.420.40 19 309 2.7E-81 T 14-10-2018 Thimo_0300 825fc98af9c23477a31eb6c95bcee36f 843 Pfam PF12704 MacB-like periplasmic core domain 486 683 7.6E-7 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Thimo_0300 825fc98af9c23477a31eb6c95bcee36f 843 Pfam PF12704 MacB-like periplasmic core domain 20 232 7.2E-9 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Thimo_0300 825fc98af9c23477a31eb6c95bcee36f 843 Pfam PF02687 FtsX-like permease family 289 384 4.6E-6 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_0300 825fc98af9c23477a31eb6c95bcee36f 843 Pfam PF02687 FtsX-like permease family 740 833 2.1E-10 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_1375 69946149b13f8642063a82e7c2c03ab4 181 PIRSF PIRSF000013 2 177 3.2E-14 T 14-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 Thimo_1375 69946149b13f8642063a82e7c2c03ab4 181 SUPERFAMILY SSF48695 19 165 2.1E-21 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_1375 69946149b13f8642063a82e7c2c03ab4 181 Gene3D G3DSA:1.10.3820.10 1 174 5.5E-31 T 14-10-2018 IPR038266 NapC/NirT cytochrome c superfamily Thimo_1375 69946149b13f8642063a82e7c2c03ab4 181 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 3 166 1.1E-31 T 14-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal Thimo_3728 c2e1fd7dc299e43f3ee4efe63f660b4f 86 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 6 61 8.2E-10 T 14-10-2018 IPR022789 Antitoxin ParD Thimo_3728 c2e1fd7dc299e43f3ee4efe63f660b4f 86 SUPERFAMILY SSF47598 1 43 7.89E-12 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Thimo_3728 c2e1fd7dc299e43f3ee4efe63f660b4f 86 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 3 68 6.5E-21 T 14-10-2018 IPR022789 Antitoxin ParD Thimo_3728 c2e1fd7dc299e43f3ee4efe63f660b4f 86 Gene3D G3DSA:1.10.8.1250 10 85 9.2E-12 T 14-10-2018 IPR038296 Antitoxin ParD superfamily Thimo_0974 fe2f1edb379b6e62ab4c9479f8692a73 269 Hamap MF_01805 Segregation and condensation protein A [scpA]. 35 265 21.661 T 14-10-2018 IPR003768 Segregation and condensation protein A Thimo_0974 fe2f1edb379b6e62ab4c9479f8692a73 269 Pfam PF02616 Segregation and condensation protein ScpA 52 261 7.5E-29 T 14-10-2018 IPR003768 Segregation and condensation protein A Thimo_1567 d95661944fc0f5a535b2fa1a297a89c7 376 SUPERFAMILY SSF51905 115 246 1.75E-5 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1567 d95661944fc0f5a535b2fa1a297a89c7 376 Gene3D G3DSA:3.50.50.100 1 376 3.8E-76 T 14-10-2018 Thimo_1567 d95661944fc0f5a535b2fa1a297a89c7 376 SUPERFAMILY SSF51905 4 316 1.64E-27 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Thimo_1567 d95661944fc0f5a535b2fa1a297a89c7 376 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 293 5.9E-19 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Thimo_0925 48993598b34d72ce3584cbddb23ffa9c 273 SUPERFAMILY SSF141868 35 183 3.4E-8 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0925 48993598b34d72ce3584cbddb23ffa9c 273 Gene3D G3DSA:3.20.20.450 32 235 4.2E-8 T 14-10-2018 IPR035919 EAL domain superfamily Thimo_0925 48993598b34d72ce3584cbddb23ffa9c 273 Pfam PF00563 EAL domain 36 216 1.1E-6 T 14-10-2018 IPR001633 EAL domain Thimo_1072 730fc8373c92d6ba7232ca4564d7438f 138 Pfam PF02566 OsmC-like protein 35 124 1.2E-12 T 14-10-2018 IPR003718 OsmC/Ohr family Thimo_1072 730fc8373c92d6ba7232ca4564d7438f 138 SUPERFAMILY SSF82784 3 123 5.1E-20 T 14-10-2018 IPR036102 OsmC/Ohr superfamily Thimo_1072 730fc8373c92d6ba7232ca4564d7438f 138 Gene3D G3DSA:3.30.300.20 5 131 1.9E-17 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_0745 c48c9d3e129d96b06a361cf6dd1250b5 229 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 10 220 2.0E-53 T 14-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain Thimo_2205 69bfeb0506974be6c7cd72ba1aa248b3 291 Pfam PF00892 EamA-like transporter family 158 290 4.4E-10 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Thimo_2205 69bfeb0506974be6c7cd72ba1aa248b3 291 Pfam PF00892 EamA-like transporter family 4 134 7.8E-13 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Thimo_2205 69bfeb0506974be6c7cd72ba1aa248b3 291 SUPERFAMILY SSF103481 196 291 1.7E-5 T 14-10-2018 Thimo_2205 69bfeb0506974be6c7cd72ba1aa248b3 291 SUPERFAMILY SSF103481 36 138 4.84E-13 T 14-10-2018 Thimo_0510 728e3ca7c52a3a177b33705aeea24fb3 169 SUPERFAMILY SSF52172 1 119 2.56E-40 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0510 728e3ca7c52a3a177b33705aeea24fb3 169 Pfam PF00072 Response regulator receiver domain 3 114 1.6E-27 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0510 728e3ca7c52a3a177b33705aeea24fb3 169 Gene3D G3DSA:3.40.50.12740 1 163 2.1E-44 T 14-10-2018 Thimo_0510 728e3ca7c52a3a177b33705aeea24fb3 169 SMART SM00448 1 114 9.8E-42 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_0149 1667547a251517a9589215398aae899f 243 SUPERFAMILY SSF103501 7 233 3.66E-45 T 14-10-2018 IPR036197 NarG-like superfamily Thimo_0149 1667547a251517a9589215398aae899f 243 Gene3D G3DSA:1.20.950.20 62 218 1.4E-16 T 14-10-2018 Thimo_0149 1667547a251517a9589215398aae899f 243 Pfam PF02665 Nitrate reductase gamma subunit 70 212 3.5E-12 T 14-10-2018 IPR023234 NarG-like domain Thimo_2347 64f612a0cec88e4e5fec934a1088bbc6 129 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 17.866 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Thimo_2347 64f612a0cec88e4e5fec934a1088bbc6 129 TIGRFAM TIGR00494 crcB: protein CrcB 7 117 4.2E-28 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Thimo_2347 64f612a0cec88e4e5fec934a1088bbc6 129 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 3.4E-22 T 14-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Thimo_1240 528a04762dbc0caa2be625a53310251e 483 PIRSF PIRSF006247 1 483 4.6E-181 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Thimo_1240 528a04762dbc0caa2be625a53310251e 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 85 466 4.2E-113 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Thimo_1240 528a04762dbc0caa2be625a53310251e 483 Pfam PF02386 Cation transport protein 40 478 2.6E-86 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Thimo_1583 d80c8fd9c1832eef1d1d394e2c8081a0 194 SMART SM00867 26 191 3.0E-67 T 14-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Thimo_1583 d80c8fd9c1832eef1d1d394e2c8081a0 194 SUPERFAMILY SSF101874 24 193 6.54E-54 T 14-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Thimo_1583 d80c8fd9c1832eef1d1d394e2c8081a0 194 Pfam PF04264 YceI-like domain 27 189 9.5E-39 T 14-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Thimo_1583 d80c8fd9c1832eef1d1d394e2c8081a0 194 Gene3D G3DSA:2.40.128.110 25 194 1.0E-51 T 14-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Thimo_3434 ac1c91cd2a9d3001ff12d7bff8340056 645 Gene3D G3DSA:1.25.40.10 430 628 1.2E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1193 f64a7ea5b00b33fcd7b1c2e958ef6ce1 69 TIGRFAM TIGR02449 TIGR02449: TIGR02449 family protein 5 67 2.1E-17 T 14-10-2018 IPR012662 Conserved hypothetical protein CHP02449 Thimo_2137 9d9dc95082d17cc8ed3f1a140d1cf227 160 Gene3D G3DSA:3.90.1720.10 21 152 5.9E-33 T 14-10-2018 Thimo_2137 9d9dc95082d17cc8ed3f1a140d1cf227 160 Pfam PF00877 NlpC/P60 family 52 155 1.7E-22 T 14-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Thimo_2137 9d9dc95082d17cc8ed3f1a140d1cf227 160 SUPERFAMILY SSF54001 37 158 1.81E-35 T 14-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Thimo_1838 c4b6520ea38acda7105be5149fced618 141 Pfam PF06155 Protein of unknown function (DUF971) 10 94 2.4E-28 T 14-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 Thimo_1838 c4b6520ea38acda7105be5149fced618 141 Gene3D G3DSA:3.30.2020.30 1 99 4.7E-30 T 14-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 Thimo_1636 d0b1c811068547dbee815bc1c09e60f2 199 Gene3D G3DSA:3.40.50.360 1 196 2.8E-66 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Thimo_1636 d0b1c811068547dbee815bc1c09e60f2 199 SUPERFAMILY SSF52218 1 194 6.29E-63 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Thimo_1636 d0b1c811068547dbee815bc1c09e60f2 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 4 193 1.7E-48 T 14-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 Thimo_1636 d0b1c811068547dbee815bc1c09e60f2 199 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 14-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Thimo_1636 d0b1c811068547dbee815bc1c09e60f2 199 Pfam PF03358 NADPH-dependent FMN reductase 11 125 1.6E-8 T 14-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Thimo_1807 0fa12b3e58e1f259249ece96650a19dd 144 Pfam PF10116 Protein required for attachment to host cells 4 140 4.1E-40 T 14-10-2018 IPR019291 Host attachment protein Thimo_1179 1daae718fbcf8cc49c485eda6e1524a7 145 SUPERFAMILY SSF82784 7 142 3.66E-39 T 14-10-2018 IPR036102 OsmC/Ohr superfamily Thimo_1179 1daae718fbcf8cc49c485eda6e1524a7 145 Pfam PF02566 OsmC-like protein 41 137 3.4E-16 T 14-10-2018 IPR003718 OsmC/Ohr family Thimo_1179 1daae718fbcf8cc49c485eda6e1524a7 145 Gene3D G3DSA:2.20.25.10 8 39 1.1E-9 T 14-10-2018 Thimo_1179 1daae718fbcf8cc49c485eda6e1524a7 145 Gene3D G3DSA:3.30.300.20 46 144 1.3E-28 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Thimo_2616 00a3de339a82d6ca3fe40b26449830a9 208 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 48 70 - T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Thimo_2616 00a3de339a82d6ca3fe40b26449830a9 208 Pfam PF01066 CDP-alcohol phosphatidyltransferase 3 70 1.2E-16 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Thimo_2616 00a3de339a82d6ca3fe40b26449830a9 208 Gene3D G3DSA:1.20.120.1760 2 179 2.7E-15 T 14-10-2018 Thimo_2616 00a3de339a82d6ca3fe40b26449830a9 208 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 180 2.3E-51 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Thimo_2616 00a3de339a82d6ca3fe40b26449830a9 208 PIRSF PIRSF000847 1 189 1.1E-42 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Thimo_2911 7ea51f1a7775a9feeb01aed944ba45e2 488 SUPERFAMILY SSF88713 50 465 2.08E-54 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Thimo_2911 7ea51f1a7775a9feeb01aed944ba45e2 488 Gene3D G3DSA:3.20.110.20 47 466 1.7E-17 T 14-10-2018 Thimo_3127 4b0e024519e201b16825f78fd6b8fb89 248 SUPERFAMILY SSF69572 1 245 7.98E-88 T 14-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Thimo_3127 4b0e024519e201b16825f78fd6b8fb89 248 Gene3D G3DSA:3.40.50.720 1 247 7.4E-92 T 14-10-2018 Thimo_3127 4b0e024519e201b16825f78fd6b8fb89 248 Pfam PF00899 ThiF family 9 241 2.9E-61 T 14-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Thimo_2521 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 Gene3D G3DSA:3.40.50.300 3 231 3.6E-63 T 14-10-2018 Thimo_2521 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 SUPERFAMILY SSF52540 6 227 2.66E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2521 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 SMART SM00382 33 221 1.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2521 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 Pfam PF00005 ABC transporter 25 173 6.5E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_2521 98adac5ae9dc2b3d9c3b1fbe27e8ac2a 232 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_3202 44cf3636fb95952f0de343610aebc501 98 Pfam PF01381 Helix-turn-helix 7 42 1.0E-5 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3202 44cf3636fb95952f0de343610aebc501 98 SUPERFAMILY SSF47413 3 64 1.1E-7 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_3202 44cf3636fb95952f0de343610aebc501 98 SMART SM00530 6 63 6.3E-4 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3202 44cf3636fb95952f0de343610aebc501 98 Gene3D G3DSA:1.10.260.40 1 80 7.7E-18 T 14-10-2018 Thimo_3356 0601cd6297569e457bb00b90636596b9 129 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 47 58 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3356 0601cd6297569e457bb00b90636596b9 129 Gene3D G3DSA:3.30.70.20 18 67 1.5E-6 T 14-10-2018 Thimo_3356 0601cd6297569e457bb00b90636596b9 129 Pfam PF13187 4Fe-4S dicluster domain 46 93 1.1E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_3356 0601cd6297569e457bb00b90636596b9 129 Gene3D G3DSA:3.30.70.20 68 129 6.7E-7 T 14-10-2018 Thimo_3356 0601cd6297569e457bb00b90636596b9 129 SUPERFAMILY SSF54862 25 111 7.85E-17 T 14-10-2018 Thimo_1891 7cd57ff2342e8fa35afb7688b944bfc9 319 Pfam PF13464 Domain of unknown function (DUF4115) 240 313 2.8E-20 T 14-10-2018 IPR025194 Domain of unknown function DUF4115 Thimo_1891 7cd57ff2342e8fa35afb7688b944bfc9 319 Pfam PF13413 Helix-turn-helix domain 23 84 1.7E-22 T 14-10-2018 Thimo_1891 7cd57ff2342e8fa35afb7688b944bfc9 319 SUPERFAMILY SSF47413 18 82 7.41E-6 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_1891 7cd57ff2342e8fa35afb7688b944bfc9 319 SMART SM00530 23 84 5.4E-4 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_1891 7cd57ff2342e8fa35afb7688b944bfc9 319 Gene3D G3DSA:1.10.260.40 16 108 6.1E-25 T 14-10-2018 Thimo_3403 3bb97b80b9fa02529aeebd6481695a83 625 Pfam PF00990 Diguanylate cyclase, GGDEF domain 453 609 2.3E-47 T 14-10-2018 IPR000160 GGDEF domain Thimo_3403 3bb97b80b9fa02529aeebd6481695a83 625 SMART SM00267 441 613 6.1E-59 T 14-10-2018 IPR000160 GGDEF domain Thimo_3403 3bb97b80b9fa02529aeebd6481695a83 625 SUPERFAMILY SSF55073 457 614 1.73E-49 T 14-10-2018 IPR029787 Nucleotide cyclase Thimo_3403 3bb97b80b9fa02529aeebd6481695a83 625 Gene3D G3DSA:3.30.70.270 445 616 1.7E-57 T 14-10-2018 Thimo_3403 3bb97b80b9fa02529aeebd6481695a83 625 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 450 611 2.4E-54 T 14-10-2018 IPR000160 GGDEF domain Thimo_1324 4e2e1804875ff0f1039a2a0601f4116b 117 Hamap MF_00599 Cell division protein FtsB [ftsB]. 21 110 30.996 T 14-10-2018 IPR023081 Cell division protein FtsB Thimo_1324 4e2e1804875ff0f1039a2a0601f4116b 117 Pfam PF04977 Septum formation initiator 31 109 7.8E-25 T 14-10-2018 IPR007060 Septum formation initiator FtsL/DivIC Thimo_0636 b693d911282b2aca1210c3dcbd8561b3 242 SMART SM00382 42 230 2.6E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_0636 b693d911282b2aca1210c3dcbd8561b3 242 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0636 b693d911282b2aca1210c3dcbd8561b3 242 Pfam PF00005 ABC transporter 33 181 4.4E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0636 b693d911282b2aca1210c3dcbd8561b3 242 SUPERFAMILY SSF52540 14 237 5.19E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0636 b693d911282b2aca1210c3dcbd8561b3 242 Gene3D G3DSA:3.40.50.300 12 240 5.6E-69 T 14-10-2018 Thimo_2010 c7e6b22b6c8c89ab09d54f67418311bc 251 Pfam PF16537 Type II secretion system protein B 192 247 9.7E-14 T 14-10-2018 IPR032389 Type II secretion system protein B Thimo_2068 cec6a6bd242b9d40c33a6c9f13915a02 278 Pfam PF09509 Protein of unknown function (Hypoth_ymh) 153 221 2.5E-8 T 14-10-2018 IPR012654 Conserved hypothetical protein CHP02391 Thimo_3692 c3481412b84ba56eca43cd1a9d7856e9 191 Gene3D G3DSA:2.60.60.30 20 186 1.2E-78 T 14-10-2018 Thimo_3692 c3481412b84ba56eca43cd1a9d7856e9 191 Pfam PF02342 TerD domain 1 187 2.8E-87 T 14-10-2018 IPR003325 TerD domain Thimo_3709 6792c5a6536cd9161969a52a570c18d8 451 SUPERFAMILY SSF56059 165 359 5.41E-14 T 14-10-2018 Thimo_3709 6792c5a6536cd9161969a52a570c18d8 451 Gene3D G3DSA:3.30.470.20 177 443 6.1E-8 T 14-10-2018 Thimo_0903 43ef2d7fd8455fe2053653db4653f6bf 227 Gene3D G3DSA:3.40.50.410 15 194 3.5E-30 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0903 43ef2d7fd8455fe2053653db4653f6bf 227 SMART SM00327 13 195 1.1E-18 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0903 43ef2d7fd8455fe2053653db4653f6bf 227 Pfam PF00092 von Willebrand factor type A domain 16 182 3.5E-15 T 14-10-2018 IPR002035 von Willebrand factor, type A Thimo_0903 43ef2d7fd8455fe2053653db4653f6bf 227 SUPERFAMILY SSF53300 12 189 8.74E-28 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_2554 34f1e50f4bec5c042b89533befe69b3e 133 Pfam PF03652 Holliday junction resolvase 3 130 4.2E-38 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Thimo_2554 34f1e50f4bec5c042b89533befe69b3e 133 Gene3D G3DSA:3.30.420.140 1 132 2.6E-40 T 14-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Thimo_2554 34f1e50f4bec5c042b89533befe69b3e 133 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 5 129 6.0E-37 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Thimo_2554 34f1e50f4bec5c042b89533befe69b3e 133 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 2 133 23.274 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Thimo_2554 34f1e50f4bec5c042b89533befe69b3e 133 SMART SM00732 2 102 9.2E-30 T 14-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Thimo_2554 34f1e50f4bec5c042b89533befe69b3e 133 SUPERFAMILY SSF53098 2 129 5.46E-37 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_1837 f0ca65739ad7d4efca9f3328fad06dfd 474 Pfam PF03600 Citrate transporter 48 422 3.1E-55 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Thimo_1252 fe324b0cdfa7fb6f3183f08fd117226b 379 Pfam PF00950 ABC 3 transport family 13 277 3.5E-41 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Thimo_1252 fe324b0cdfa7fb6f3183f08fd117226b 379 SUPERFAMILY SSF81345 11 274 1.44E-22 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Thimo_2518 06f1518c64c263235cdcccc7185467c8 251 Gene3D G3DSA:2.50.20.10 18 247 1.5E-56 T 14-10-2018 Thimo_2518 06f1518c64c263235cdcccc7185467c8 251 Pfam PF17131 Outer membrane lipoprotein-sorting protein 67 247 8.8E-50 T 14-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein Thimo_3233 76ada4043e843c2b2b417b8bb55be85a 181 Gene3D G3DSA:1.25.40.10 22 175 2.4E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_3233 76ada4043e843c2b2b417b8bb55be85a 181 SUPERFAMILY SSF48452 41 155 3.5E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_2165 7ab6645849db16ae727b4c99c773c9a6 132 Pfam PF00072 Response regulator receiver domain 5 116 2.6E-20 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2165 7ab6645849db16ae727b4c99c773c9a6 132 Gene3D G3DSA:3.40.50.2300 1 129 4.9E-25 T 14-10-2018 Thimo_2165 7ab6645849db16ae727b4c99c773c9a6 132 SMART SM00448 3 117 7.2E-16 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2165 7ab6645849db16ae727b4c99c773c9a6 132 SUPERFAMILY SSF52172 3 122 7.83E-24 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 Gene3D G3DSA:3.10.430.100 61 148 1.9E-28 T 14-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 2 47 1.7E-20 T 14-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 SUPERFAMILY SSF55653 61 148 3.27E-25 T 14-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 14-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 2 148 9.3E-46 T 14-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 SUPERFAMILY SSF55658 1 57 1.6E-17 T 14-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 1.0E-25 T 14-10-2018 IPR020069 Ribosomal protein L9, C-terminal Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.728 T 14-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Thimo_1512 6432177f6e5e71ce7d798694985496f5 149 Gene3D G3DSA:3.40.5.10 1 50 2.3E-20 T 14-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_3526 349a9d59da5dbc3eb0cfedc599eaa2cb 163 Pfam PF13772 AIG2-like family 60 140 2.9E-13 T 14-10-2018 Thimo_3526 349a9d59da5dbc3eb0cfedc599eaa2cb 163 Gene3D G3DSA:3.10.490.10 1 157 8.1E-38 T 14-10-2018 Thimo_3526 349a9d59da5dbc3eb0cfedc599eaa2cb 163 SUPERFAMILY SSF110857 1 125 1.28E-13 T 14-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily Thimo_2969 34e097b3fa8ff950ac28729ff932f9c5 221 SUPERFAMILY SSF52833 34 211 4.59E-38 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2969 34e097b3fa8ff950ac28729ff932f9c5 221 PIRSF PIRSF001488 9 217 5.7E-43 T 14-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL Thimo_2969 34e097b3fa8ff950ac28729ff932f9c5 221 Gene3D G3DSA:3.40.30.10 31 220 2.4E-50 T 14-10-2018 Thimo_2969 34e097b3fa8ff950ac28729ff932f9c5 221 Pfam PF01323 DSBA-like thioredoxin domain 55 194 4.9E-15 T 14-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Thimo_1864 8fa95f52ff18dcfe71942c26e97ddd64 520 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 171 514 1.6E-123 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Thimo_1864 8fa95f52ff18dcfe71942c26e97ddd64 520 SUPERFAMILY SSF53383 162 518 6.19E-115 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1864 8fa95f52ff18dcfe71942c26e97ddd64 520 Gene3D G3DSA:3.90.1150.10 397 517 2.6E-38 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Thimo_1864 8fa95f52ff18dcfe71942c26e97ddd64 520 Gene3D G3DSA:3.40.640.10 153 395 4.1E-91 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_3586 7be29bc7702e9c8de804aff5c51c9a84 184 SUPERFAMILY SSF88874 4 178 3.14E-38 T 14-10-2018 Thimo_3586 7be29bc7702e9c8de804aff5c51c9a84 184 Pfam PF07484 Phage Tail Collar Domain 8 64 5.1E-19 T 14-10-2018 IPR011083 Phage tail collar domain Thimo_3586 7be29bc7702e9c8de804aff5c51c9a84 184 Gene3D G3DSA:3.90.1340.10 1 60 3.4E-12 T 14-10-2018 IPR037053 Phage tail collar domain superfamily Thimo_3256 b8cf57ad53f5fe3e6cc42ec925dea4f7 164 SUPERFAMILY SSF53850 41 161 4.07E-11 T 14-10-2018 Thimo_3256 b8cf57ad53f5fe3e6cc42ec925dea4f7 164 Gene3D G3DSA:3.40.190.10 45 162 4.8E-8 T 14-10-2018 Thimo_2729 835e6367b07077a762e51db99585e959 314 Gene3D G3DSA:1.20.1260.10 158 305 4.5E-27 T 14-10-2018 IPR012347 Ferritin-like Thimo_2729 835e6367b07077a762e51db99585e959 314 SUPERFAMILY SSF47240 162 306 3.23E-23 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_2729 835e6367b07077a762e51db99585e959 314 Pfam PF02915 Rubrerythrin 164 222 1.1E-6 T 14-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Thimo_2729 835e6367b07077a762e51db99585e959 314 Pfam PF02915 Rubrerythrin 252 305 3.3E-7 T 14-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Thimo_2729 835e6367b07077a762e51db99585e959 314 Gene3D G3DSA:1.20.1260.10 2 154 1.2E-9 T 14-10-2018 IPR012347 Ferritin-like Thimo_0736 bdc88caec2641f5fb2930a7c6a4d0ae9 138 SUPERFAMILY SSF111038 4 132 1.24E-40 T 14-10-2018 IPR035917 YjbQ-like superfamily Thimo_0736 bdc88caec2641f5fb2930a7c6a4d0ae9 138 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 128 9.5E-41 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_0736 bdc88caec2641f5fb2930a7c6a4d0ae9 138 PIRSF PIRSF004681 1 134 4.4E-37 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_0736 bdc88caec2641f5fb2930a7c6a4d0ae9 138 Gene3D G3DSA:2.60.120.460 1 134 3.5E-43 T 14-10-2018 IPR035917 YjbQ-like superfamily Thimo_0736 bdc88caec2641f5fb2930a7c6a4d0ae9 138 Pfam PF01894 Uncharacterised protein family UPF0047 17 131 6.6E-38 T 14-10-2018 IPR001602 Uncharacterised protein family UPF0047 Thimo_1972 3e8c042b9d861ee5be805baaffa28671 296 SUPERFAMILY SSF56317 5 291 8.37E-87 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_1972 3e8c042b9d861ee5be805baaffa28671 296 Pfam PF00795 Carbon-nitrogen hydrolase 8 274 4.0E-55 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Thimo_1972 3e8c042b9d861ee5be805baaffa28671 296 Gene3D G3DSA:3.60.110.10 2 295 1.3E-97 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Thimo_0614 919f31a81fe2316e1f3361108ec1992f 246 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 30 242 2.0E-77 T 14-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 Thimo_0614 919f31a81fe2316e1f3361108ec1992f 246 Gene3D G3DSA:3.40.190.10 29 243 4.4E-81 T 14-10-2018 Thimo_0614 919f31a81fe2316e1f3361108ec1992f 246 Gene3D G3DSA:3.40.190.10 102 205 4.4E-81 T 14-10-2018 Thimo_0614 919f31a81fe2316e1f3361108ec1992f 246 SUPERFAMILY SSF53850 24 243 7.44E-61 T 14-10-2018 Thimo_0614 919f31a81fe2316e1f3361108ec1992f 246 PIRSF PIRSF004846 2 246 3.5E-54 T 14-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 Thimo_0614 919f31a81fe2316e1f3361108ec1992f 246 Pfam PF13531 Bacterial extracellular solute-binding protein 26 243 3.9E-43 T 14-10-2018 Thimo_2902 621d1e36ed9f696a7df637b948e4cc65 120 SUPERFAMILY SSF55008 32 73 6.31E-6 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Thimo_2902 621d1e36ed9f696a7df637b948e4cc65 120 Gene3D G3DSA:3.30.70.100 16 74 2.9E-7 T 14-10-2018 Thimo_0127 967a697bfb013ad40817f1ba02a5b306 336 SUPERFAMILY SSF53448 6 260 4.26E-45 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0127 967a697bfb013ad40817f1ba02a5b306 336 Gene3D G3DSA:3.90.550.10 4 242 4.7E-40 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_0127 967a697bfb013ad40817f1ba02a5b306 336 Pfam PF00535 Glycosyl transferase family 2 14 179 2.4E-27 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Thimo_0507 b1b62a55f37ff6a33e64194f8a10871d 334 TIGRFAM TIGR00341 TIGR00341: TIGR00341 family protein 41 323 8.8E-56 T 14-10-2018 Thimo_0507 b1b62a55f37ff6a33e64194f8a10871d 334 Pfam PF04087 Domain of unknown function (DUF389) 144 278 3.9E-35 T 14-10-2018 IPR005240 Protein of unknown function DUF389 Thimo_1381 58c8c63a7aa29e519343d82865db297e 89 SUPERFAMILY SSF143120 1 75 4.19E-12 T 14-10-2018 IPR036165 YefM-like superfamily Thimo_1381 58c8c63a7aa29e519343d82865db297e 89 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 61 1.2E-7 T 14-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Thimo_1238 894cfcd6e552de3856676a3b59686f24 232 Pfam PF07238 PilZ domain 14 114 1.4E-10 T 14-10-2018 IPR009875 PilZ domain GO:0035438 Thimo_1238 894cfcd6e552de3856676a3b59686f24 232 Gene3D G3DSA:2.40.10.220 10 131 5.7E-9 T 14-10-2018 Thimo_1238 894cfcd6e552de3856676a3b59686f24 232 SUPERFAMILY SSF141371 10 122 5.49E-8 T 14-10-2018 Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 SUPERFAMILY SSF55729 405 567 2.52E-14 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 Gene3D G3DSA:3.40.50.11040 12 207 1.5E-48 T 14-10-2018 Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 Pfam PF13718 GNAT acetyltransferase 2 418 532 1.4E-17 T 14-10-2018 IPR000182 GNAT domain Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 Pfam PF05127 Helicase 216 381 4.5E-51 T 14-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 Gene3D G3DSA:3.40.630.30 374 582 9.9E-66 T 14-10-2018 Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 SUPERFAMILY SSF52540 191 325 2.87E-14 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 Gene3D G3DSA:3.40.50.12320 214 371 2.9E-43 T 14-10-2018 Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 28 723 47.615 T 14-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 Thimo_2326 865e6ecbe90248acfb12d8444a93dfbb 723 Pfam PF08351 Domain of unknown function (DUF1726) 74 162 2.2E-18 T 14-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 Thimo_2284 c6be862ad39652f27be1d4debc30f521 275 SUPERFAMILY SSF48576 17 270 1.44E-28 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_2284 c6be862ad39652f27be1d4debc30f521 275 Gene3D G3DSA:1.10.600.10 10 247 1.6E-18 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Thimo_2284 c6be862ad39652f27be1d4debc30f521 275 Pfam PF00494 Squalene/phytoene synthase 16 254 2.5E-24 T 14-10-2018 Thimo_1651 b236de9357692d31c20c0f555480a238 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 85 1.4E-20 T 14-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Thimo_1651 b236de9357692d31c20c0f555480a238 206 Gene3D G3DSA:1.20.1050.10 87 189 4.6E-78 T 14-10-2018 Thimo_1651 b236de9357692d31c20c0f555480a238 206 SUPERFAMILY SSF52833 9 108 2.53E-30 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_1651 b236de9357692d31c20c0f555480a238 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 107 188 1.3E-7 T 14-10-2018 IPR004046 Glutathione S-transferase, C-terminal Thimo_1651 b236de9357692d31c20c0f555480a238 206 ProSitePatterns PS00195 Glutaredoxin active site. 11 27 - T 14-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 Thimo_1651 b236de9357692d31c20c0f555480a238 206 SUPERFAMILY SSF47616 80 203 3.41E-27 T 14-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Thimo_1651 b236de9357692d31c20c0f555480a238 206 Gene3D G3DSA:3.40.30.10 9 198 4.6E-78 T 14-10-2018 Thimo_0071 895211ad03b7d0942fbaad156bacdc84 267 SUPERFAMILY SSF53613 6 258 1.44E-60 T 14-10-2018 IPR029056 Ribokinase-like Thimo_0071 895211ad03b7d0942fbaad156bacdc84 267 Pfam PF08543 Phosphomethylpyrimidine kinase 16 249 6.3E-66 T 14-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Thimo_0071 895211ad03b7d0942fbaad156bacdc84 267 Gene3D G3DSA:3.40.1190.20 1 265 7.5E-73 T 14-10-2018 IPR029056 Ribokinase-like Thimo_3152 e7744d045024b0cfae087aa04b1e2cd6 154 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 153 8.6E-29 T 14-10-2018 IPR018729 Protein of unknown function DUF2269, transmembrane Thimo_1067 58081011680daa039c70b756778e2c1a 104 Pfam PF08895 Domain of unknown function (DUF1840) 1 101 4.5E-31 T 14-10-2018 IPR014991 Protein of unknown function DUF1840 Thimo_1018 969bb47e726662e4286cb85f047b95d4 531 Gene3D G3DSA:1.50.10.100 55 289 1.8E-51 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Thimo_1018 969bb47e726662e4286cb85f047b95d4 531 SUPERFAMILY SSF48230 78 279 1.01E-18 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Thimo_1018 969bb47e726662e4286cb85f047b95d4 531 Gene3D G3DSA:2.70.98.70 305 521 1.3E-14 T 14-10-2018 Thimo_1018 969bb47e726662e4286cb85f047b95d4 531 Pfam PF16889 Heparinase II/III N-terminus 155 274 2.1E-15 T 14-10-2018 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 Thimo_1018 969bb47e726662e4286cb85f047b95d4 531 Pfam PF07940 Heparinase II/III-like protein 300 521 8.8E-53 T 14-10-2018 IPR012480 Heparinase II/III-like GO:0016829 Thimo_3752 a4fb5816a96625557ce575f61293d212 90 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 2 84 4.3E-29 T 14-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB Thimo_0327 5c2aae40348dc966e7afa2ff404e0e3a 279 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 68 272 3.1E-36 T 14-10-2018 IPR000477 Reverse transcriptase domain Thimo_0327 5c2aae40348dc966e7afa2ff404e0e3a 279 SUPERFAMILY SSF56672 11 271 1.27E-35 T 14-10-2018 Thimo_1407 4bf0ec2ebaa8dcefd3717a467de9b2e1 441 Pfam PF09967 VWA-like domain (DUF2201) 318 440 4.1E-38 T 14-10-2018 IPR018698 VWA-like domain Thimo_1407 4bf0ec2ebaa8dcefd3717a467de9b2e1 441 Pfam PF13203 Putative metallopeptidase domain 5 308 1.3E-75 T 14-10-2018 IPR025154 Putative metallopeptidase domain Thimo_2121 eebdc75bca26d4e732d807c551226bca 192 Pfam PF11845 Protein of unknown function (DUF3365) 13 191 2.7E-26 T 14-10-2018 IPR021796 Protein of unknown function DUF3365 Thimo_1343 cfff9ee30fb76cb7a3ab36687793d48f 172 Pfam PF05751 FixH 19 152 7.2E-27 T 14-10-2018 IPR008620 Nitrogen fixation protein FixH Thimo_1688 a9c807e7e441d9bc951140b207cff457 67 Pfam PF11839 Alanine-zipper, major outer membrane lipoprotein 30 67 5.2E-6 T 14-10-2018 IPR021793 Major outer membrane lipoprotein Oprl Thimo_2960 d5f61c69a2397a840abfe6fb6681f78a 185 Gene3D G3DSA:3.90.79.10 3 183 1.0E-41 T 14-10-2018 Thimo_2960 d5f61c69a2397a840abfe6fb6681f78a 185 SUPERFAMILY SSF55811 33 182 1.05E-21 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Thimo_2960 d5f61c69a2397a840abfe6fb6681f78a 185 Pfam PF00293 NUDIX domain 52 166 1.8E-12 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Thimo_1147 e11bd815f9240387028a5e7ac7923d0f 486 Gene3D G3DSA:3.40.50.12780 294 356 1.8E-5 T 14-10-2018 Thimo_1147 e11bd815f9240387028a5e7ac7923d0f 486 SUPERFAMILY SSF56801 60 345 8.7E-5 T 14-10-2018 Thimo_1147 e11bd815f9240387028a5e7ac7923d0f 486 Gene3D G3DSA:3.40.50.12780 5 268 3.2E-14 T 14-10-2018 Thimo_2225 e22219741d41de8feae657e4c847698f 304 Pfam PF06189 5'-nucleotidase 40 303 2.9E-109 T 14-10-2018 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821|Reactome: R-HSA-74259 Thimo_2259 0a8d83ff7ac377186d4a1d92258ef919 450 Gene3D G3DSA:2.130.10.10 237 438 8.9E-6 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_2259 0a8d83ff7ac377186d4a1d92258ef919 450 SUPERFAMILY SSF50969 115 424 7.85E-14 T 14-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like Thimo_2418 50a40066cdc2b9283de8ac99f44d4472 258 Pfam PF06966 Protein of unknown function (DUF1295) 21 247 4.4E-71 T 14-10-2018 IPR010721 Protein of unknown function DUF1295 Thimo_2418 50a40066cdc2b9283de8ac99f44d4472 258 Gene3D G3DSA:1.20.120.1630 59 253 2.9E-13 T 14-10-2018 Thimo_0192 4cff6ea0bf720b656604882b189609ba 185 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 23 159 4.8E-37 T 14-10-2018 IPR018639 Domain of unknown function DUF2062 Thimo_0122 5e9d81e454ffb8f5ee725da66ae58fee 255 Pfam PF00994 Probable molybdopterin binding domain 15 168 2.7E-19 T 14-10-2018 IPR001453 MoaB/Mog domain Thimo_0122 5e9d81e454ffb8f5ee725da66ae58fee 255 SMART SM00852 14 174 5.0E-25 T 14-10-2018 IPR001453 MoaB/Mog domain Thimo_0122 5e9d81e454ffb8f5ee725da66ae58fee 255 SUPERFAMILY SSF53218 12 205 6.41E-28 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Thimo_0122 5e9d81e454ffb8f5ee725da66ae58fee 255 Gene3D G3DSA:3.40.980.10 11 171 6.1E-35 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Thimo_2655 277a4ea51ae51bc3591200b43993d247 212 Pfam PF00694 Aconitase C-terminal domain 1 132 1.7E-35 T 14-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Thimo_2655 277a4ea51ae51bc3591200b43993d247 212 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 9.0E-81 T 14-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Thimo_2655 277a4ea51ae51bc3591200b43993d247 212 SUPERFAMILY SSF52016 2 202 2.75E-59 T 14-10-2018 Thimo_2655 277a4ea51ae51bc3591200b43993d247 212 Gene3D G3DSA:3.20.19.10 1 184 1.3E-73 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Thimo_2655 277a4ea51ae51bc3591200b43993d247 212 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 42.35 T 14-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Thimo_2637 1dc1838240b71de10b3c95ea15b5faab 159 Gene3D G3DSA:3.40.1260.10 1 159 5.3E-42 T 14-10-2018 IPR027396 DsrEFH-like Thimo_2637 1dc1838240b71de10b3c95ea15b5faab 159 SUPERFAMILY SSF75169 4 157 2.19E-20 T 14-10-2018 IPR027396 DsrEFH-like Thimo_2637 1dc1838240b71de10b3c95ea15b5faab 159 Pfam PF13686 DsrE/DsrF/DrsH-like family 3 157 3.5E-56 T 14-10-2018 IPR032836 DsrE2-like family Thimo_0752 d876a5b52544e1adc770ff49f918f344 251 Pfam PF03725 3' exoribonuclease family, domain 2 157 223 5.9E-10 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0752 d876a5b52544e1adc770ff49f918f344 251 SUPERFAMILY SSF55666 152 237 9.16E-23 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0752 d876a5b52544e1adc770ff49f918f344 251 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 44.799 T 14-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Thimo_0752 d876a5b52544e1adc770ff49f918f344 251 SUPERFAMILY SSF54211 1 181 1.42E-41 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Thimo_0752 d876a5b52544e1adc770ff49f918f344 251 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 14-10-2018 IPR018336 Ribonuclease PH, conserved site Thimo_0752 d876a5b52544e1adc770ff49f918f344 251 Gene3D G3DSA:3.30.230.70 10 238 1.6E-56 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0752 d876a5b52544e1adc770ff49f918f344 251 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 8.4E-20 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Thimo_0752 d876a5b52544e1adc770ff49f918f344 251 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 5.6E-109 T 14-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Thimo_0541 1044bfa21a8ed9ff6c9b53e8605412de 328 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 312 2.2E-93 T 14-10-2018 IPR007296 Domain of unknown function DUF403 Thimo_1236 a5efb0d98f4c5b4941ef6f7bbe08bf90 53 Pfam PF11752 Protein of unknown function (DUF3309) 6 52 1.1E-17 T 14-10-2018 IPR021738 Protein of unknown function DUF3309 Thimo_1958 1513c9ba9161843550c736963e43b725 251 SUPERFAMILY SSF69572 18 248 1.96E-56 T 14-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Thimo_1958 1513c9ba9161843550c736963e43b725 251 Gene3D G3DSA:3.40.50.720 12 250 3.0E-75 T 14-10-2018 Thimo_1958 1513c9ba9161843550c736963e43b725 251 Pfam PF00899 ThiF family 19 247 2.6E-38 T 14-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Thimo_0317 e58d23b27aa0a2175c7d306ae7b584d1 467 Pfam PF09700 CRISPR-associated protein (Cas_Cmr3) 6 417 2.0E-35 T 14-10-2018 IPR019117 CRISPR-associated protein, Cmr3 Thimo_2560 50ab0227919ee882d7d47dfa65f01223 236 SUPERFAMILY SSF53300 38 199 3.11E-7 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_3001 eff39bfbcc7862b398592a3c43436238 64 Gene3D G3DSA:4.10.220.20 1 55 4.6E-22 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_3001 eff39bfbcc7862b398592a3c43436238 64 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 4.7E-15 T 14-10-2018 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 Thimo_3001 eff39bfbcc7862b398592a3c43436238 64 PRINTS PR00673 Light harvesting protein A chain signature 29 40 3.4E-7 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_3001 eff39bfbcc7862b398592a3c43436238 64 PRINTS PR00673 Light harvesting protein A chain signature 10 29 3.4E-7 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_3001 eff39bfbcc7862b398592a3c43436238 64 PRINTS PR00673 Light harvesting protein A chain signature 3 10 3.4E-7 T 14-10-2018 IPR018332 Antenna complex, alpha subunit Thimo_3001 eff39bfbcc7862b398592a3c43436238 64 SUPERFAMILY SSF56918 1 45 4.08E-15 T 14-10-2018 IPR035889 Light-harvesting complex Thimo_2782 d127c55b31a9f0aa6b4afb23f2fc3d8c 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 10 153 1.3E-34 T 14-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Thimo_2782 d127c55b31a9f0aa6b4afb23f2fc3d8c 162 Pfam PF04093 rod shape-determining protein MreD 9 154 4.3E-26 T 14-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Thimo_2782 d127c55b31a9f0aa6b4afb23f2fc3d8c 162 PIRSF PIRSF018472 3 161 9.2E-50 T 14-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type Thimo_0139 3d63ad8c2d8082bdf205b7857d7f046c 229 Pfam PF09559 Cas6 Crispr 19 219 4.4E-63 T 14-10-2018 IPR014174 CRISPR-associated protein, Cas6-related Thimo_0139 3d63ad8c2d8082bdf205b7857d7f046c 229 TIGRFAM TIGR02807 cas6_cmx6: CRISPR-associated protein Cas6, subtype MYXAN 18 217 1.2E-30 T 14-10-2018 IPR014174 CRISPR-associated protein, Cas6-related Thimo_1971 c493c5623e14c637b043fdc0b30e02d6 212 Gene3D G3DSA:3.40.30.10 31 212 1.4E-29 T 14-10-2018 Thimo_1971 c493c5623e14c637b043fdc0b30e02d6 212 Pfam PF00578 AhpC/TSA family 35 161 1.1E-9 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Thimo_1971 c493c5623e14c637b043fdc0b30e02d6 212 SUPERFAMILY SSF52833 32 209 1.17E-21 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_1477 c24caf068b328dc1424cb89f47c38a10 404 SMART SM00228 317 389 3.2E-7 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_1477 c24caf068b328dc1424cb89f47c38a10 404 Gene3D G3DSA:3.40.50.11550 71 288 6.2E-23 T 14-10-2018 Thimo_1477 c24caf068b328dc1424cb89f47c38a10 404 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 72 278 3.1E-66 T 14-10-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN Thimo_1477 c24caf068b328dc1424cb89f47c38a10 404 SUPERFAMILY SSF50156 317 389 3.81E-10 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Thimo_1477 c24caf068b328dc1424cb89f47c38a10 404 Gene3D G3DSA:1.10.8.760 176 241 6.2E-23 T 14-10-2018 Thimo_1477 c24caf068b328dc1424cb89f47c38a10 404 Gene3D G3DSA:2.30.42.10 319 404 1.0E-9 T 14-10-2018 Thimo_1477 c24caf068b328dc1424cb89f47c38a10 404 SUPERFAMILY SSF159501 65 307 2.44E-62 T 14-10-2018 Thimo_1477 c24caf068b328dc1424cb89f47c38a10 404 Pfam PF13180 PDZ domain 318 402 1.7E-7 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Thimo_0714 c975ae3fdca11c959cbf0c2f4d2ee989 209 Pfam PF00484 Carbonic anhydrase 45 198 3.5E-36 T 14-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Thimo_0714 c975ae3fdca11c959cbf0c2f4d2ee989 209 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 50 57 - T 14-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Thimo_0714 c975ae3fdca11c959cbf0c2f4d2ee989 209 SUPERFAMILY SSF53056 3 203 9.29E-51 T 14-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Thimo_0714 c975ae3fdca11c959cbf0c2f4d2ee989 209 Gene3D G3DSA:3.40.1050.10 1 209 3.0E-58 T 14-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Thimo_0714 c975ae3fdca11c959cbf0c2f4d2ee989 209 SMART SM00947 38 203 7.3E-48 T 14-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Thimo_3484 57f8db093f607a2850679f715c9f96df 723 Pfam PF11739 Dicarboxylate transport 524 716 4.3E-34 T 14-10-2018 IPR021730 Dicarboxylate transport Thimo_1391 5cab7b25cfbe239ede7815c69ed75095 266 Gene3D G3DSA:3.30.2400.30 3 255 1.5E-71 T 14-10-2018 Thimo_1391 5cab7b25cfbe239ede7815c69ed75095 266 PIRSF PIRSF019254 1 266 5.9E-71 T 14-10-2018 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 Thimo_1391 5cab7b25cfbe239ede7815c69ed75095 266 Pfam PF04454 Encapsulating protein for peroxidase 1 251 3.4E-70 T 14-10-2018 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 Thimo_1391 5cab7b25cfbe239ede7815c69ed75095 266 Gene3D G3DSA:3.30.2320.10 133 261 1.5E-71 T 14-10-2018 Thimo_0378 69e3789fea2cfc384e79d906a1722321 304 Pfam PF01925 Sulfite exporter TauE/SafE 62 296 5.4E-32 T 14-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Thimo_0967 383a405ed05768b3f537baa1df0552a9 290 Pfam PF13145 PPIC-type PPIASE domain 123 245 6.6E-20 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Thimo_0967 383a405ed05768b3f537baa1df0552a9 290 SUPERFAMILY SSF109998 33 170 5.1E-14 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily Thimo_0967 383a405ed05768b3f537baa1df0552a9 290 SUPERFAMILY SSF54534 136 231 3.07E-29 T 14-10-2018 Thimo_0967 383a405ed05768b3f537baa1df0552a9 290 Gene3D G3DSA:3.10.50.40 136 257 5.4E-32 T 14-10-2018 Thimo_1394 96ee54e39ec7cf35ac88b79c3c0b0de6 452 Pfam PF02308 MgtC family 20 145 1.6E-14 T 14-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Thimo_1394 96ee54e39ec7cf35ac88b79c3c0b0de6 452 Pfam PF13194 Domain of unknown function (DUF4010) 193 402 9.6E-59 T 14-10-2018 IPR025105 Domain of unknown function DUF4010 Thimo_2726 9ce6167b535c5f38d92d8f94c85178d4 123 Pfam PF01850 PIN domain 7 108 2.9E-12 T 14-10-2018 IPR002716 PIN domain Thimo_2726 9ce6167b535c5f38d92d8f94c85178d4 123 SUPERFAMILY SSF88723 5 112 1.18E-23 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_2726 9ce6167b535c5f38d92d8f94c85178d4 123 Gene3D G3DSA:3.40.50.1010 1 119 2.5E-20 T 14-10-2018 Thimo_0527 a10dc9d01224dc96f9e5eec165a35a3e 505 SUPERFAMILY SSF102114 5 339 7.98E-54 T 14-10-2018 Thimo_0527 a10dc9d01224dc96f9e5eec165a35a3e 505 Pfam PF13186 Iron-sulfur cluster-binding domain 259 337 1.8E-6 T 14-10-2018 IPR023885 4Fe4S-binding SPASM domain Thimo_0527 a10dc9d01224dc96f9e5eec165a35a3e 505 SMART SM00729 4 215 2.5E-4 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Thimo_0527 a10dc9d01224dc96f9e5eec165a35a3e 505 Gene3D G3DSA:3.20.20.70 3 311 8.0E-48 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_0527 a10dc9d01224dc96f9e5eec165a35a3e 505 Pfam PF04055 Radical SAM superfamily 10 173 5.9E-24 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Thimo_0527 a10dc9d01224dc96f9e5eec165a35a3e 505 Pfam PF13353 4Fe-4S single cluster domain 10 119 1.9E-7 T 14-10-2018 Thimo_2794 453a2d4726dd79ef05e00b6f1951e790 377 SUPERFAMILY SSF55729 4 148 5.23E-31 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_2794 453a2d4726dd79ef05e00b6f1951e790 377 Pfam PF11814 Peptidase_C39 like family 159 365 6.0E-85 T 14-10-2018 IPR021770 Protein of unknown function DUF3335 Thimo_2794 453a2d4726dd79ef05e00b6f1951e790 377 Pfam PF00583 Acetyltransferase (GNAT) family 20 125 5.8E-12 T 14-10-2018 IPR000182 GNAT domain Thimo_2794 453a2d4726dd79ef05e00b6f1951e790 377 Gene3D G3DSA:3.40.630.30 2 149 4.6E-31 T 14-10-2018 Thimo_3061 6b20a31ec60aa12d5dd3a4f276c7926d 100 Pfam PF05717 IS66 Orf2 like protein 9 80 1.6E-29 T 14-10-2018 IPR008878 Transposase IS66, Orf2 Thimo_1363 4d33f1540c87645d6758b418995ee10e 77 Pfam PF13488 Glycine zipper 32 72 1.0E-8 T 14-10-2018 IPR039567 Glycine zipper domain Thimo_0225 efdee0049cec64314c29b0d32fb8e67b 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 247 3.4E-23 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_0225 efdee0049cec64314c29b0d32fb8e67b 259 Gene3D G3DSA:1.10.3720.10 53 251 1.3E-24 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0225 efdee0049cec64314c29b0d32fb8e67b 259 SUPERFAMILY SSF161098 57 242 6.8E-33 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_3638 d132b9d6d2ca3a4ac339c50b7fc138a6 189 Pfam PF03843 Outer membrane lipoprotein Slp family 27 160 1.8E-29 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 Thimo_0108 c9eb9ba1f571d15ee4fe7007a7bcf8a0 346 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 48 212 5.9E-8 T 14-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 Thimo_0108 c9eb9ba1f571d15ee4fe7007a7bcf8a0 346 SUPERFAMILY SSF53187 21 281 4.3E-38 T 14-10-2018 Thimo_0108 c9eb9ba1f571d15ee4fe7007a7bcf8a0 346 Gene3D G3DSA:3.40.630.10 7 288 2.8E-23 T 14-10-2018 Thimo_3158 4584c64c072db50104137b0fd6b9fc49 963 Pfam PF09822 ABC-type uncharacterized transport system 439 685 1.5E-30 T 14-10-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Thimo_3158 4584c64c072db50104137b0fd6b9fc49 963 Pfam PF09822 ABC-type uncharacterized transport system 277 429 2.2E-25 T 14-10-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Thimo_3158 4584c64c072db50104137b0fd6b9fc49 963 Pfam PF12679 ABC-2 family transporter protein 57 228 2.7E-11 T 14-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 Thimo_2545 b31b8a2af376512747599c739f706e55 452 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 32 46 - T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Thimo_2545 b31b8a2af376512747599c739f706e55 452 SUPERFAMILY SSF161070 9 449 1.09E-132 T 14-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 Thimo_2545 b31b8a2af376512747599c739f706e55 452 Pfam PF00209 Sodium:neurotransmitter symporter family 10 125 1.4E-24 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Thimo_2545 b31b8a2af376512747599c739f706e55 452 Pfam PF00209 Sodium:neurotransmitter symporter family 156 450 5.3E-29 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Thimo_2545 b31b8a2af376512747599c739f706e55 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 45 64 1.8E-17 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Thimo_2545 b31b8a2af376512747599c739f706e55 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 259 279 1.8E-17 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Thimo_2545 b31b8a2af376512747599c739f706e55 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 16 37 1.8E-17 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Thimo_2545 b31b8a2af376512747599c739f706e55 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 430 450 1.8E-17 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Thimo_1562 4c7ec89b9ec3ee01632ab59095ec6eda 414 PIRSF PIRSF033563 1 414 6.0E-122 T 14-10-2018 IPR008323 Uncharacterised conserved protein UCP033563 Thimo_1562 4c7ec89b9ec3ee01632ab59095ec6eda 414 Pfam PF06245 Protein of unknown function (DUF1015) 4 411 1.3E-124 T 14-10-2018 IPR008323 Uncharacterised conserved protein UCP033563 Thimo_0319 84f62fd61e2c11e77d3e0ac4d08856d9 514 TIGRFAM TIGR01894 cas_TM1795_cmr1: CRISPR type III-B/RAMP module RAMP protein Cmr1 44 79 3.3E-8 T 14-10-2018 IPR007522 CRISPR-associated protein TM1795 Thimo_1055 e0544e2a55d5009cb4372a63532806f2 298 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 121 292 2.8E-32 T 14-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG Thimo_1055 e0544e2a55d5009cb4372a63532806f2 298 SUPERFAMILY SSF102405 41 290 2.44E-54 T 14-10-2018 Thimo_1055 e0544e2a55d5009cb4372a63532806f2 298 Pfam PF03641 Possible lysine decarboxylase 160 289 2.9E-33 T 14-10-2018 IPR031100 LOG family Thimo_2833 eb46ad961cb23afcc85fe7be0b67a7ce 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.599 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2833 eb46ad961cb23afcc85fe7be0b67a7ce 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2833 eb46ad961cb23afcc85fe7be0b67a7ce 129 Pfam PF01196 Ribosomal protein L17 20 116 1.2E-34 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2833 eb46ad961cb23afcc85fe7be0b67a7ce 129 Gene3D G3DSA:3.90.1030.10 1 117 1.9E-47 T 14-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2833 eb46ad961cb23afcc85fe7be0b67a7ce 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 9.1E-47 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_2833 eb46ad961cb23afcc85fe7be0b67a7ce 129 SUPERFAMILY SSF64263 1 119 1.15E-50 T 14-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 SUPERFAMILY SSF51735 5 255 3.97E-64 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.7E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.7E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.7E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 46 57 2.7E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.7E-11 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 Gene3D G3DSA:3.40.50.720 1 256 2.4E-56 T 14-10-2018 Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 5.0E-84 T 14-10-2018 Thimo_0437 d0b2eff0f9c3b1015cf8fd5d3dee45f6 258 PIRSF PIRSF000094 1 258 1.9E-112 T 14-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Thimo_1438 bb2b31e785e82c1264cbe150b943fcf2 86 Gene3D G3DSA:1.10.1200.10 2 84 2.9E-11 T 14-10-2018 IPR036736 ACP-like superfamily Thimo_1438 bb2b31e785e82c1264cbe150b943fcf2 86 SUPERFAMILY SSF47336 2 84 9.03E-9 T 14-10-2018 IPR036736 ACP-like superfamily Thimo_2611 fd696386aa7dfee715122a3ba1f49d8b 322 Gene3D G3DSA:1.50.10.150 7 319 1.5E-103 T 14-10-2018 IPR038665 Voltage-dependent anion channel superfamily Thimo_2611 fd696386aa7dfee715122a3ba1f49d8b 322 Pfam PF03595 Voltage-dependent anion channel 12 308 2.2E-67 T 14-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 Thimo_1986 de77065a5bca1d79f9ad9e317ccdb9dd 91 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 6 85 1.2E-7 T 14-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system Thimo_2916 9dad443df947f61b0cdc03f6def300ec 220 SUPERFAMILY SSF46785 92 172 1.18E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2916 9dad443df947f61b0cdc03f6def300ec 220 Gene3D G3DSA:1.10.10.10 1 108 9.9E-35 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_2916 9dad443df947f61b0cdc03f6def300ec 220 Hamap MF_01584 UPF0502 protein YceH [yceH]. 12 209 28.907 T 14-10-2018 IPR007432 Protein of unknown function DUF480 Thimo_2916 9dad443df947f61b0cdc03f6def300ec 220 SUPERFAMILY SSF46785 9 89 1.54E-28 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_2916 9dad443df947f61b0cdc03f6def300ec 220 Pfam PF04337 Protein of unknown function, DUF480 12 157 4.3E-54 T 14-10-2018 IPR007432 Protein of unknown function DUF480 Thimo_3553 c2c7b554fb5e35d05d1c7964b8f49157 242 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 2 228 7.5E-61 T 14-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 Thimo_3580 8c9b4cc23237143e6222a8d16b5cbc06 302 SUPERFAMILY SSF53795 108 175 2.84E-13 T 14-10-2018 Thimo_3580 8c9b4cc23237143e6222a8d16b5cbc06 302 Gene3D G3DSA:3.40.50.300 108 164 2.2E-8 T 14-10-2018 Thimo_0447 f75e77be313b0ee59c4e15aa1b7d1d05 213 Pfam PF06532 Protein of unknown function (DUF1109) 10 213 5.7E-67 T 14-10-2018 IPR009495 Anti-sigma-F factor NrsF Thimo_1849 b09db1697b0da93140d04382732a0d58 107 SUPERFAMILY SSF101386 4 93 2.43E-26 T 14-10-2018 Thimo_1849 b09db1697b0da93140d04382732a0d58 107 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 6 89 8.7E-33 T 14-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Thimo_1849 b09db1697b0da93140d04382732a0d58 107 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 3 89 22.168 T 14-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Thimo_1849 b09db1697b0da93140d04382732a0d58 107 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 92 1.4E-17 T 14-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 Thimo_1849 b09db1697b0da93140d04382732a0d58 107 Gene3D G3DSA:1.10.287.1080 2 95 3.6E-31 T 14-10-2018 Thimo_0502 c3efe9fc3d4f69c96ba0c89739628a11 180 Gene3D G3DSA:3.40.50.300 3 170 2.8E-52 T 14-10-2018 Thimo_0502 c3efe9fc3d4f69c96ba0c89739628a11 180 PIRSF PIRSF006135 1 172 1.1E-52 T 14-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 Thimo_0502 c3efe9fc3d4f69c96ba0c89739628a11 180 SUPERFAMILY SSF52540 4 170 6.61E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0502 c3efe9fc3d4f69c96ba0c89739628a11 180 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 168 4.9E-56 T 14-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 Thimo_3186 7506477305a23392943369c8274c74a2 129 Gene3D G3DSA:3.30.420.270 57 122 3.2E-8 T 14-10-2018 Thimo_3186 7506477305a23392943369c8274c74a2 129 Pfam PF02472 Biopolymer transport protein ExbD/TolR 6 125 4.0E-25 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Thimo_1267 2f011701e8936fcb39d4601a4a14b724 237 PIRSF PIRSF006102 9 226 5.6E-73 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_1267 2f011701e8936fcb39d4601a4a14b724 237 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 13 219 26.328 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Thimo_1267 2f011701e8936fcb39d4601a4a14b724 237 Pfam PF02508 Rnf-Nqr subunit, membrane protein 15 208 6.5E-59 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Thimo_1267 2f011701e8936fcb39d4601a4a14b724 237 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 16 217 1.9E-75 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Thimo_2485 1a727a9393abd6a92a427fef1ebe1f4c 75 Gene3D G3DSA:1.10.1470.10 1 72 3.6E-28 T 14-10-2018 IPR036629 YjbJ superfamily Thimo_2485 1a727a9393abd6a92a427fef1ebe1f4c 75 Pfam PF05532 CsbD-like 4 56 2.0E-19 T 14-10-2018 IPR008462 CsbD-like domain Thimo_2485 1a727a9393abd6a92a427fef1ebe1f4c 75 SUPERFAMILY SSF69047 1 66 1.57E-23 T 14-10-2018 IPR036629 YjbJ superfamily Thimo_2485 1a727a9393abd6a92a427fef1ebe1f4c 75 PIRSF PIRSF039008 1 66 7.9E-30 T 14-10-2018 IPR026042 Stress response protein YjbJ Thimo_1527 8334478018e78ecaad78c8b84c002d8e 43 Pfam PF08085 Entericidin EcnA/B family 19 39 2.6E-9 T 14-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 Thimo_1439 08a7e8d9765c77776bdfcb642135f004 389 ProSitePatterns PS00221 MIP family signature. 14 22 - T 14-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 Thimo_1439 08a7e8d9765c77776bdfcb642135f004 389 SUPERFAMILY SSF53756 1 384 1.86E-67 T 14-10-2018 Thimo_1439 08a7e8d9765c77776bdfcb642135f004 389 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 226 359 7.7E-13 T 14-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 Thimo_1439 08a7e8d9765c77776bdfcb642135f004 389 Gene3D G3DSA:3.40.50.2000 210 369 2.5E-92 T 14-10-2018 Thimo_1439 08a7e8d9765c77776bdfcb642135f004 389 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 10 384 7.2E-53 T 14-10-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 Thimo_1439 08a7e8d9765c77776bdfcb642135f004 389 Gene3D G3DSA:3.40.50.2000 6 381 2.5E-92 T 14-10-2018 Thimo_3222 4e809fc56e91ed4824dec542dee68d2a 144 SUPERFAMILY SSF88723 1 139 2.05E-30 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_3222 4e809fc56e91ed4824dec542dee68d2a 144 Pfam PF01850 PIN domain 5 125 4.6E-14 T 14-10-2018 IPR002716 PIN domain Thimo_3222 4e809fc56e91ed4824dec542dee68d2a 144 Gene3D G3DSA:3.40.50.1010 4 140 1.6E-35 T 14-10-2018 Thimo_3222 4e809fc56e91ed4824dec542dee68d2a 144 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 137 11.352 T 14-10-2018 IPR022907 VapC family GO:0004540 Thimo_2688 12120dd0df5c4aa84e8fffb4c2db3c95 238 Gene3D G3DSA:1.10.10.2260 82 189 1.3E-17 T 14-10-2018 Thimo_2688 12120dd0df5c4aa84e8fffb4c2db3c95 238 Gene3D G3DSA:1.10.10.2250 1 77 4.1E-28 T 14-10-2018 Thimo_2688 12120dd0df5c4aa84e8fffb4c2db3c95 238 Pfam PF04288 MukE-like family 9 222 1.4E-36 T 14-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 Thimo_1625 29a385606005a156400bd99938ad3421 127 Pfam PF07883 Cupin domain 43 111 3.8E-8 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Thimo_1625 29a385606005a156400bd99938ad3421 127 SUPERFAMILY SSF51182 17 118 2.41E-19 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Thimo_1625 29a385606005a156400bd99938ad3421 127 Gene3D G3DSA:2.60.120.10 22 124 6.0E-16 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_0412 eef350ad6596995fe2c5507de6b42399 1244 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 943 1182 9.8E-34 T 14-10-2018 IPR007452 Translocation and assembly module TamB Thimo_0412 eef350ad6596995fe2c5507de6b42399 1244 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1185 1243 2.2E-5 T 14-10-2018 IPR007452 Translocation and assembly module TamB Thimo_1465 d4538b544ce02d0beca61e92fa0f1c11 218 Pfam PF04972 BON domain 76 136 2.7E-8 T 14-10-2018 IPR007055 BON domain Thimo_1465 d4538b544ce02d0beca61e92fa0f1c11 218 Pfam PF04972 BON domain 146 210 9.0E-9 T 14-10-2018 IPR007055 BON domain Thimo_3102 4ed23205bf4347b58c1c530e0494b2f2 315 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 302 34.811 T 14-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 Thimo_3102 4ed23205bf4347b58c1c530e0494b2f2 315 Pfam PF04381 Putative exonuclease, RdgC 2 298 1.7E-105 T 14-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 Thimo_2967 dbfaf5dbc555c2918a67502546cc0ee8 158 Pfam PF00578 AhpC/TSA family 5 131 2.2E-31 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Thimo_2967 dbfaf5dbc555c2918a67502546cc0ee8 158 SUPERFAMILY SSF52833 3 154 7.97E-45 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2967 dbfaf5dbc555c2918a67502546cc0ee8 158 Gene3D G3DSA:3.40.30.10 2 154 4.9E-44 T 14-10-2018 Thimo_2967 dbfaf5dbc555c2918a67502546cc0ee8 158 PIRSF PIRSF000239 1 158 8.8E-23 T 14-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Thimo_1405 fac7324eed31d54429fbc181e0fa3c02 462 Gene3D G3DSA:3.40.640.10 70 359 1.4E-82 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Thimo_1405 fac7324eed31d54429fbc181e0fa3c02 462 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 21 445 4.4E-207 T 14-10-2018 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 Thimo_1405 fac7324eed31d54429fbc181e0fa3c02 462 Gene3D G3DSA:3.90.1150.160 361 459 1.0E-31 T 14-10-2018 Thimo_1405 fac7324eed31d54429fbc181e0fa3c02 462 SUPERFAMILY SSF53383 15 445 7.55E-134 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Thimo_1405 fac7324eed31d54429fbc181e0fa3c02 462 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 41 381 1.0E-79 T 14-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 Thimo_2417 69e760be99580bacc6c80a040189c297 417 Pfam PF00149 Calcineurin-like phosphoesterase 2 197 2.5E-12 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Thimo_2417 69e760be99580bacc6c80a040189c297 417 SUPERFAMILY SSF56300 2 309 1.28E-52 T 14-10-2018 Thimo_2417 69e760be99580bacc6c80a040189c297 417 Gene3D G3DSA:3.60.21.10 2 246 3.5E-46 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Thimo_2417 69e760be99580bacc6c80a040189c297 417 PIRSF PIRSF033091 1 413 3.1E-103 T 14-10-2018 IPR014576 Predicted phosphoesterase, YhaO type Thimo_3670 7e2498880d84c7f4e9f0708783ddc9c9 387 Pfam PF01551 Peptidase family M23 283 375 1.5E-21 T 14-10-2018 IPR016047 Peptidase M23 Thimo_3670 7e2498880d84c7f4e9f0708783ddc9c9 387 SUPERFAMILY SSF51261 207 379 5.75E-42 T 14-10-2018 IPR011055 Duplicated hybrid motif Thimo_3670 7e2498880d84c7f4e9f0708783ddc9c9 387 Gene3D G3DSA:2.70.70.10 244 380 6.0E-32 T 14-10-2018 IPR011055 Duplicated hybrid motif Thimo_3079 fe1f2a6d02088d53b78a67faf4a02252 281 SUPERFAMILY SSF52540 99 274 1.52E-29 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3079 fe1f2a6d02088d53b78a67faf4a02252 281 Pfam PF13614 AAA domain 99 261 5.5E-10 T 14-10-2018 IPR025669 AAA domain Thimo_3079 fe1f2a6d02088d53b78a67faf4a02252 281 Gene3D G3DSA:3.40.50.300 21 281 1.0E-51 T 14-10-2018 Thimo_2587 51de8a632b579dd15458fded28a9f309 114 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 32 97 7.1E-13 T 14-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Thimo_2587 51de8a632b579dd15458fded28a9f309 114 SUPERFAMILY SSF46626 11 103 5.36E-13 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2587 51de8a632b579dd15458fded28a9f309 114 Gene3D G3DSA:1.10.760.10 31 104 2.8E-15 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_0856 89d0812feefd6f7448ca1a18e11ad2a6 498 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 59 220 1.9E-24 T 14-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like Thimo_2287 eb536f98020773a0a96860f4bbf971db 290 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 1 248 2.4E-101 T 14-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 Thimo_2287 eb536f98020773a0a96860f4bbf971db 290 Gene3D G3DSA:3.40.50.620 1 272 1.5E-89 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2287 eb536f98020773a0a96860f4bbf971db 290 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 1 279 37.404 T 14-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 Thimo_2287 eb536f98020773a0a96860f4bbf971db 290 Gene3D G3DSA:3.40.50.620 64 208 1.5E-89 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2287 eb536f98020773a0a96860f4bbf971db 290 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 1 225 6.8E-35 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Thimo_2287 eb536f98020773a0a96860f4bbf971db 290 SUPERFAMILY SSF52374 1 273 8.59E-74 T 14-10-2018 Thimo_2422 b54eeb578f4afb00fe099a9a3c9c7d10 285 Gene3D G3DSA:3.40.630.30 1 124 1.1E-11 T 14-10-2018 Thimo_2422 b54eeb578f4afb00fe099a9a3c9c7d10 285 SUPERFAMILY SSF55729 5 264 2.45E-35 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_2422 b54eeb578f4afb00fe099a9a3c9c7d10 285 Gene3D G3DSA:3.40.630.90 144 285 1.2E-10 T 14-10-2018 Thimo_2422 b54eeb578f4afb00fe099a9a3c9c7d10 285 Pfam PF00583 Acetyltransferase (GNAT) family 27 123 1.1E-7 T 14-10-2018 IPR000182 GNAT domain Thimo_3700 aaff5b4ab42cf4d8a937a371003ede2b 474 PIRSF PIRSF012666 1 474 7.5E-140 T 14-10-2018 IPR016602 Uncharacterised conserved protein UCP012666 Thimo_3700 aaff5b4ab42cf4d8a937a371003ede2b 474 Gene3D G3DSA:3.30.590.20 39 456 1.4E-58 T 14-10-2018 Thimo_3700 aaff5b4ab42cf4d8a937a371003ede2b 474 SUPERFAMILY SSF55931 39 448 2.26E-45 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Thimo_3563 2930927702f8224e7308b897126a72ec 278 Gene3D G3DSA:1.20.950.20 105 260 3.4E-19 T 14-10-2018 Thimo_3563 2930927702f8224e7308b897126a72ec 278 Pfam PF01292 Prokaryotic cytochrome b561 18 269 1.8E-39 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_3563 2930927702f8224e7308b897126a72ec 278 SUPERFAMILY SSF81342 16 275 3.36E-36 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_3395 6bea177ccef4ca9f9fd4fd24d6c3266a 123 Pfam PF07813 LTXXQ motif family protein 29 112 3.0E-5 T 14-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 Thimo_0874 7248d03aef8ca3361a8fe90ceef3e8d6 162 Gene3D G3DSA:3.30.530.20 8 159 5.5E-26 T 14-10-2018 IPR023393 START-like domain superfamily Thimo_0874 7248d03aef8ca3361a8fe90ceef3e8d6 162 SUPERFAMILY SSF55961 13 152 5.5E-16 T 14-10-2018 Thimo_0874 7248d03aef8ca3361a8fe90ceef3e8d6 162 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 10 150 4.7E-15 T 14-10-2018 IPR019587 Polyketide cyclase/dehydrase Thimo_3212 d29d531303da5fe65cc73ac2d7b0c1ec 123 Pfam PF01934 Protein of unknown function DUF86 18 111 2.6E-30 T 14-10-2018 IPR008201 Protein of unknown function DUF86 Thimo_2169 9d66e74cbd7b0a1289eb2d734dd828cc 246 SUPERFAMILY SSF50346 2 109 8.44E-23 T 14-10-2018 IPR011033 PRC-barrel-like superfamily Thimo_2169 9d66e74cbd7b0a1289eb2d734dd828cc 246 SUPERFAMILY SSF50346 88 245 2.35E-22 T 14-10-2018 IPR011033 PRC-barrel-like superfamily Thimo_2169 9d66e74cbd7b0a1289eb2d734dd828cc 246 Gene3D G3DSA:3.90.50.10 7 106 9.8E-7 T 14-10-2018 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 Thimo_2169 9d66e74cbd7b0a1289eb2d734dd828cc 246 Gene3D G3DSA:3.90.50.10 147 246 2.8E-7 T 14-10-2018 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 Thimo_0660 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 SUPERFAMILY SSF52540 32 295 2.99E-40 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0660 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 PIRSF PIRSF002849 3 319 1.6E-116 T 14-10-2018 Thimo_0660 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 51 181 1.0E-61 T 14-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Thimo_0660 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 Gene3D G3DSA:1.10.8.300 212 317 7.4E-23 T 14-10-2018 Thimo_0660 d1a9cebdf9ceb78f11b850ff9cd3fa1b 319 Gene3D G3DSA:3.40.50.300 32 198 7.0E-43 T 14-10-2018 Thimo_3694 83f4888fa8c69a330e92e93a37575e8e 422 Gene3D G3DSA:2.60.60.30 22 179 1.2E-49 T 14-10-2018 Thimo_3694 83f4888fa8c69a330e92e93a37575e8e 422 Pfam PF02342 TerD domain 4 181 4.1E-54 T 14-10-2018 IPR003325 TerD domain Thimo_3694 83f4888fa8c69a330e92e93a37575e8e 422 PIRSF PIRSF037118 3 421 1.8E-141 T 14-10-2018 IPR017115 Tellurite resistance, TerA Thimo_2646 20615d205b30aa83b1f69a885100cd8d 444 Pfam PF08245 Mur ligase middle domain 58 274 5.9E-9 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Thimo_2646 20615d205b30aa83b1f69a885100cd8d 444 PIRSF PIRSF001563 12 436 1.1E-99 T 14-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Thimo_2646 20615d205b30aa83b1f69a885100cd8d 444 SUPERFAMILY SSF53623 16 297 5.89E-81 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_2646 20615d205b30aa83b1f69a885100cd8d 444 Gene3D G3DSA:3.90.190.20 300 437 2.5E-29 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_2646 20615d205b30aa83b1f69a885100cd8d 444 Gene3D G3DSA:3.40.1190.10 8 299 8.8E-87 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Thimo_2646 20615d205b30aa83b1f69a885100cd8d 444 TIGRFAM TIGR01499 folC: bifunctional protein FolC 37 430 1.9E-93 T 14-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Thimo_2646 20615d205b30aa83b1f69a885100cd8d 444 SUPERFAMILY SSF53244 299 431 2.2E-25 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Thimo_3421 df45f1bc014cb8e6bfd5e1c8f33ab109 638 SUPERFAMILY SSF46626 392 638 9.74E-16 T 14-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Thimo_2690 893f75c2b80a7c1d24b6423b339d605b 291 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 38 259 2.3E-44 T 14-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system Thimo_0980 b10c159cd75d9a97453e9f3a0f22e82f 246 Pfam PF10531 SLBB domain 142 186 6.0E-9 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_0980 b10c159cd75d9a97453e9f3a0f22e82f 246 Gene3D G3DSA:3.10.560.10 62 225 8.1E-32 T 14-10-2018 Thimo_0980 b10c159cd75d9a97453e9f3a0f22e82f 246 Pfam PF02563 Polysaccharide biosynthesis/export protein 62 134 3.2E-23 T 14-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 Thimo_0980 b10c159cd75d9a97453e9f3a0f22e82f 246 Gene3D G3DSA:3.30.1950.10 67 138 8.1E-32 T 14-10-2018 Thimo_3743 4e9f29fbb4232f55f7090e77d18060c2 172 TIGRFAM TIGR00608 radc: DNA repair protein RadC 31 172 4.9E-42 T 14-10-2018 IPR001405 Uncharacterised protein family UPF0758 Thimo_3743 4e9f29fbb4232f55f7090e77d18060c2 172 SUPERFAMILY SSF102712 102 142 8.5E-6 T 14-10-2018 Thimo_3743 4e9f29fbb4232f55f7090e77d18060c2 172 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 121 126 - T 14-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site Thimo_3743 4e9f29fbb4232f55f7090e77d18060c2 172 Gene3D G3DSA:3.40.140.10 48 172 3.0E-38 T 14-10-2018 Thimo_3743 4e9f29fbb4232f55f7090e77d18060c2 172 Pfam PF04002 RadC-like JAB domain 51 171 3.2E-40 T 14-10-2018 IPR025657 RadC-like JAB domain Thimo_3154 bbf4e4f858945ee7bdde2252147e8cc3 480 SUPERFAMILY SSF52540 6 166 9.88E-16 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_3154 bbf4e4f858945ee7bdde2252147e8cc3 480 Gene3D G3DSA:3.40.50.300 4 200 3.4E-22 T 14-10-2018 Thimo_3154 bbf4e4f858945ee7bdde2252147e8cc3 480 Pfam PF01926 50S ribosome-binding GTPase 10 147 2.2E-13 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Thimo_3154 bbf4e4f858945ee7bdde2252147e8cc3 480 Pfam PF11981 Domain of unknown function (DUF3482) 163 454 2.0E-58 T 14-10-2018 IPR021871 Protein of unknown function DUF3482 Thimo_2939 bd7586ce382ed33ecdf8efaf2b1d4458 360 Gene3D G3DSA:2.130.10.10 141 359 1.8E-8 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Thimo_2939 bd7586ce382ed33ecdf8efaf2b1d4458 360 SUPERFAMILY SSF50969 95 350 7.61E-14 T 14-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like Thimo_2562 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 Gene3D G3DSA:3.40.50.1820 6 257 1.3E-60 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2562 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 SUPERFAMILY SSF53474 6 254 2.1E-43 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2562 afbd5cc4c7bfc8ee3f3aa97d9113b69b 259 Pfam PF12146 Serine aminopeptidase, S33 44 135 1.4E-13 T 14-10-2018 IPR022742 Serine aminopeptidase, S33 Thimo_0433 4eaf8a160e599369441319e569f90204 90 SMART SM00411 1 90 2.6E-43 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_0433 4eaf8a160e599369441319e569f90204 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.9E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_0433 4eaf8a160e599369441319e569f90204 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.9E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_0433 4eaf8a160e599369441319e569f90204 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.9E-19 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_0433 4eaf8a160e599369441319e569f90204 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 5.6E-34 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Thimo_0433 4eaf8a160e599369441319e569f90204 90 Gene3D G3DSA:4.10.520.10 1 90 9.2E-37 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Thimo_0433 4eaf8a160e599369441319e569f90204 90 SUPERFAMILY SSF47729 1 90 5.0E-32 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Thimo_0433 4eaf8a160e599369441319e569f90204 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 14-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Thimo_0828 ef7b258131866ecb61d7ed6afb70a829 242 Pfam PF04172 LrgB-like family 23 235 2.0E-78 T 14-10-2018 IPR007300 CidB/LrgB family Thimo_0479 bed2c0e3e49d7e087edb923f49c629e8 229 SUPERFAMILY SSF53335 17 229 1.39E-51 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0479 bed2c0e3e49d7e087edb923f49c629e8 229 Pfam PF01596 O-methyltransferase 31 228 2.0E-66 T 14-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 Thimo_0479 bed2c0e3e49d7e087edb923f49c629e8 229 Gene3D G3DSA:3.40.50.150 11 229 1.5E-78 T 14-10-2018 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 Gene3D G3DSA:3.40.50.12740 5 212 1.3E-55 T 14-10-2018 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 SMART SM00448 4 117 3.2E-19 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 3.1E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 3.1E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 3.1E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 SUPERFAMILY SSF46894 145 212 1.6E-20 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 SUPERFAMILY SSF52172 3 133 5.83E-28 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 Pfam PF00072 Response regulator receiver domain 6 117 4.5E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 6.1E-19 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_2593 04d1bcbf79aacfe5c718d1cfa46f05a7 215 SMART SM00421 150 207 5.3E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Thimo_0534 a6d3cee1a7dfa1196861adc288cdab00 333 Gene3D G3DSA:3.40.1750.20 185 251 8.8E-60 T 14-10-2018 Thimo_0534 a6d3cee1a7dfa1196861adc288cdab00 333 Gene3D G3DSA:3.90.226.10 80 282 8.8E-60 T 14-10-2018 Thimo_0534 a6d3cee1a7dfa1196861adc288cdab00 333 Pfam PF01343 Peptidase family S49 145 289 6.1E-34 T 14-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Thimo_0534 a6d3cee1a7dfa1196861adc288cdab00 333 SUPERFAMILY SSF52096 60 281 3.4E-40 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_1310 41aa4ac2d016dea923a09d97d85edb19 192 Pfam PF00582 Universal stress protein family 1 107 4.2E-7 T 14-10-2018 IPR006016 UspA Thimo_1310 41aa4ac2d016dea923a09d97d85edb19 192 SUPERFAMILY SSF52402 1 108 1.51E-11 T 14-10-2018 Thimo_1310 41aa4ac2d016dea923a09d97d85edb19 192 Gene3D G3DSA:3.40.50.620 1 110 1.2E-11 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_2159 da973c05cfc759453efaf7fa074cf664 847 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 286 6.2E-8 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain Thimo_2159 da973c05cfc759453efaf7fa074cf664 847 SUPERFAMILY SSF53850 51 364 3.62E-21 T 14-10-2018 Thimo_2159 da973c05cfc759453efaf7fa074cf664 847 Gene3D G3DSA:3.10.105.10 119 352 3.1E-19 T 14-10-2018 Thimo_3123 7fb92697a87337e0bdf13d9a604a402d 207 PIRSF PIRSF000709 11 195 5.9E-6 T 14-10-2018 Thimo_3123 7fb92697a87337e0bdf13d9a604a402d 207 Gene3D G3DSA:3.40.50.1240 20 198 1.5E-41 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_3123 7fb92697a87337e0bdf13d9a604a402d 207 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 22 193 3.4E-37 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_3123 7fb92697a87337e0bdf13d9a604a402d 207 SUPERFAMILY SSF53254 20 204 6.85E-40 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Thimo_3123 7fb92697a87337e0bdf13d9a604a402d 207 SMART SM00855 19 164 3.8E-9 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Thimo_1400 1cc519ce99639daeb075baa1f82801ab 143 Gene3D G3DSA:3.10.580.10 1 129 5.6E-22 T 14-10-2018 Thimo_1400 1cc519ce99639daeb075baa1f82801ab 143 Pfam PF00571 CBS domain 68 122 1.7E-6 T 14-10-2018 IPR000644 CBS domain Thimo_1400 1cc519ce99639daeb075baa1f82801ab 143 Pfam PF00571 CBS domain 7 56 1.1E-8 T 14-10-2018 IPR000644 CBS domain Thimo_1400 1cc519ce99639daeb075baa1f82801ab 143 SMART SM00116 75 123 0.0049 T 14-10-2018 IPR000644 CBS domain Thimo_1400 1cc519ce99639daeb075baa1f82801ab 143 SMART SM00116 10 58 3.1E-6 T 14-10-2018 IPR000644 CBS domain Thimo_1400 1cc519ce99639daeb075baa1f82801ab 143 SUPERFAMILY SSF54631 5 122 8.72E-23 T 14-10-2018 Thimo_3698 7f5a0af39fb9889075c61ca77e792329 306 PIRSF PIRSF015582 7 306 4.5E-45 T 14-10-2018 IPR011206 Citrate lyase beta subunit-like Thimo_3698 7f5a0af39fb9889075c61ca77e792329 306 SUPERFAMILY SSF51621 21 255 1.26E-28 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Thimo_3698 7f5a0af39fb9889075c61ca77e792329 306 Gene3D G3DSA:3.20.20.60 9 305 5.0E-21 T 14-10-2018 Thimo_3698 7f5a0af39fb9889075c61ca77e792329 306 Pfam PF15617 C-C_Bond_Lyase of the TIM-Barrel fold 20 305 1.9E-82 T 14-10-2018 IPR039480 C-C bond lyase-like Thimo_2802 206988a629c0eeb3e4182e08bdf21c6e 139 Gene3D G3DSA:3.30.420.270 58 128 1.2E-7 T 14-10-2018 Thimo_2802 206988a629c0eeb3e4182e08bdf21c6e 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 130 1.1E-18 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Thimo_1908 05b823d83c841ba357bdc44ae1fc7935 74 SUPERFAMILY SSF47598 2 41 5.56E-5 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Thimo_1568 548675de148831580abe5796f9f9b980 339 Pfam PF02470 MlaD protein 40 146 6.7E-13 T 14-10-2018 IPR003399 Mce/MlaD Thimo_0599 4224f6668e2f84aeaf59bf4a19f87f45 162 Gene3D G3DSA:3.90.1570.10 18 160 3.2E-17 T 14-10-2018 Thimo_0599 4224f6668e2f84aeaf59bf4a19f87f45 162 SUPERFAMILY SSF52980 18 136 1.5E-19 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_0599 4224f6668e2f84aeaf59bf4a19f87f45 162 Pfam PF05685 Putative restriction endonuclease 27 138 4.6E-16 T 14-10-2018 IPR008538 Domain of unknown function DUF820 Thimo_0168 7fba89699aadcef8ed7553b03d531a03 284 Gene3D G3DSA:3.30.70.1290 1 160 2.4E-42 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_0168 7fba89699aadcef8ed7553b03d531a03 284 SMART SM01321 9 123 6.1E-42 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_0168 7fba89699aadcef8ed7553b03d531a03 284 SUPERFAMILY SSF143422 3 126 2.22E-28 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_0168 7fba89699aadcef8ed7553b03d531a03 284 Pfam PF01797 Transposase IS200 like 13 120 8.7E-16 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_1559 4579a88416ecd05c7991750c0b37a8db 377 Pfam PF03631 Virulence factor BrkB 48 302 2.1E-62 T 14-10-2018 IPR017039 Virulence factor BrkB Thimo_1559 4579a88416ecd05c7991750c0b37a8db 377 PIRSF PIRSF035875 22 321 2.4E-68 T 14-10-2018 IPR017039 Virulence factor BrkB Thimo_1559 4579a88416ecd05c7991750c0b37a8db 377 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 40 299 1.1E-31 T 14-10-2018 IPR017039 Virulence factor BrkB Thimo_2531 8eb6abf1e3c9086be1d0198db45aa33d 466 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 451 3.5E-104 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Thimo_2531 8eb6abf1e3c9086be1d0198db45aa33d 466 PIRSF PIRSF006066 272 462 1.4E-53 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Thimo_2531 8eb6abf1e3c9086be1d0198db45aa33d 466 PIRSF PIRSF006066 1 266 8.1E-82 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Thimo_0276 e2cc51227f3af2ddcce818aff37891e4 161 Pfam PF03748 Flagellar basal body-associated protein FliL 60 161 3.1E-20 T 14-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Thimo_3661 37c4c839c254e68a4a13d46b2aeee7f0 559 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 93 547 3.6E-135 T 14-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 Thimo_3661 37c4c839c254e68a4a13d46b2aeee7f0 559 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 54 547 6.3E-174 T 14-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 Thimo_3556 fecaaed3274946212c4dfe3c9a9b9b31 209 SUPERFAMILY SSF63965 5 206 8.37E-73 T 14-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 Thimo_3556 fecaaed3274946212c4dfe3c9a9b9b31 209 Pfam PF02570 Precorrin-8X methylmutase 14 206 3.2E-75 T 14-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 Thimo_3556 fecaaed3274946212c4dfe3c9a9b9b31 209 Gene3D G3DSA:3.40.50.10230 2 209 3.6E-83 T 14-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 Thimo_3090 486b1f9865b82552b361230bcd1dded8 248 Pfam PF13448 Domain of unknown function (DUF4114) 130 208 2.0E-9 T 14-10-2018 IPR025193 Domain of unknown function DUF4114 Thimo_0400 27a8052b6da1e1f327a54f9f1fe936fb 174 Gene3D G3DSA:3.40.630.30 11 156 8.5E-7 T 14-10-2018 Thimo_0400 27a8052b6da1e1f327a54f9f1fe936fb 174 SUPERFAMILY SSF55729 27 143 1.1E-9 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Thimo_0153 59b0f8640f7752268ed05b24f3aa6296 263 Pfam PF13247 4Fe-4S dicluster domain 121 218 1.5E-13 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0153 59b0f8640f7752268ed05b24f3aa6296 263 Gene3D G3DSA:3.30.70.20 57 260 3.5E-51 T 14-10-2018 Thimo_0153 59b0f8640f7752268ed05b24f3aa6296 263 SUPERFAMILY SSF54862 55 244 7.95E-49 T 14-10-2018 Thimo_0153 59b0f8640f7752268ed05b24f3aa6296 263 Gene3D G3DSA:3.30.70.20 131 195 3.5E-51 T 14-10-2018 Thimo_0153 59b0f8640f7752268ed05b24f3aa6296 263 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 157 168 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_1513 e5ae844c949ceede7fdeeb8bc4576607 485 Gene3D G3DSA:1.10.860.10 36 198 2.7E-56 T 14-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Thimo_1513 e5ae844c949ceede7fdeeb8bc4576607 485 SUPERFAMILY SSF48024 39 150 9.94E-37 T 14-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 Thimo_1513 e5ae844c949ceede7fdeeb8bc4576607 485 Pfam PF00772 DnaB-like helicase N terminal domain 41 142 5.3E-34 T 14-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Thimo_1513 e5ae844c949ceede7fdeeb8bc4576607 485 SUPERFAMILY SSF52540 217 467 1.57E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1513 e5ae844c949ceede7fdeeb8bc4576607 485 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 40 475 4.3E-177 T 14-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Thimo_1513 e5ae844c949ceede7fdeeb8bc4576607 485 Pfam PF03796 DnaB-like helicase C terminal domain 219 474 2.1E-115 T 14-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Thimo_1513 e5ae844c949ceede7fdeeb8bc4576607 485 SMART SM00382 236 434 3.0E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_1513 e5ae844c949ceede7fdeeb8bc4576607 485 Gene3D G3DSA:3.40.50.300 199 477 3.1E-106 T 14-10-2018 Thimo_0012 844c6eabf32bd147b6f813998b23f353 142 Gene3D G3DSA:1.20.120.20 19 123 8.6E-8 T 14-10-2018 Thimo_0012 844c6eabf32bd147b6f813998b23f353 142 SUPERFAMILY SSF58113 46 119 3.01E-7 T 14-10-2018 Thimo_0012 844c6eabf32bd147b6f813998b23f353 142 Pfam PF07798 Protein of unknown function (DUF1640) 45 141 6.2E-9 T 14-10-2018 IPR024461 Coiled-coil domain-containing protein 90-like Thimo_3627 3b0e0fabfd0770f54fb55cd32dd65c33 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_3627 3b0e0fabfd0770f54fb55cd32dd65c33 83 SUPERFAMILY SSF54862 4 68 1.15E-19 T 14-10-2018 Thimo_3627 3b0e0fabfd0770f54fb55cd32dd65c33 83 Gene3D G3DSA:3.30.70.20 2 83 6.7E-34 T 14-10-2018 Thimo_3627 3b0e0fabfd0770f54fb55cd32dd65c33 83 Pfam PF00037 4Fe-4S binding domain 4 25 1.9E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_2759 fc3452bbfbd4dfeaa14137e719694945 171 Gene3D G3DSA:2.60.450.10 29 171 2.2E-42 T 14-10-2018 Thimo_2759 fc3452bbfbd4dfeaa14137e719694945 171 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 14 169 21.819 T 14-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 Thimo_2759 fc3452bbfbd4dfeaa14137e719694945 171 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 29 169 3.5E-40 T 14-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 Thimo_2759 fc3452bbfbd4dfeaa14137e719694945 171 Pfam PF03968 OstA-like protein 37 146 1.0E-27 T 14-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal Thimo_3018 0e7bc6d6d40840021676cd57cfdd44d0 222 Pfam PF03703 Bacterial PH domain 98 185 7.0E-11 T 14-10-2018 IPR005182 Domain of unknown function DUF304 Thimo_0262 917b72d237b9c2068b2ec2e106d73d7a 112 Pfam PF05400 Flagellar protein FliT 26 106 1.2E-14 T 14-10-2018 IPR008622 Flagellar protein FliT Thimo_0050 7c04fbcf297bf64ec9584ef989155b8c 338 Pfam PF03934 Type II secretion system (T2SS), protein K 68 264 3.2E-32 T 14-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Thimo_0050 7c04fbcf297bf64ec9584ef989155b8c 338 SUPERFAMILY SSF158544 148 241 6.54E-24 T 14-10-2018 IPR038072 GspK, central domain superfamily Thimo_0050 7c04fbcf297bf64ec9584ef989155b8c 338 Gene3D G3DSA:1.10.40.60 141 242 2.3E-18 T 14-10-2018 IPR038072 GspK, central domain superfamily Thimo_0247 6e286ccf619cdbdf2c8acceeb02aabe9 135 SUPERFAMILY SSF46548 21 99 2.96E-18 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0247 6e286ccf619cdbdf2c8acceeb02aabe9 135 Gene3D G3DSA:1.10.1060.10 3 105 2.2E-10 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Thimo_0247 6e286ccf619cdbdf2c8acceeb02aabe9 135 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 73 84 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Thimo_0247 6e286ccf619cdbdf2c8acceeb02aabe9 135 Pfam PF13183 4Fe-4S dicluster domain 26 87 4.8E-10 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Thimo_0301 041e22efe41a62fb6e827544a2a79102 229 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_0301 041e22efe41a62fb6e827544a2a79102 229 Pfam PF00005 ABC transporter 21 168 2.5E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0301 041e22efe41a62fb6e827544a2a79102 229 SUPERFAMILY SSF52540 1 223 1.26E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0301 041e22efe41a62fb6e827544a2a79102 229 Gene3D G3DSA:3.40.50.300 1 227 7.3E-61 T 14-10-2018 Thimo_0301 041e22efe41a62fb6e827544a2a79102 229 SMART SM00382 29 217 4.3E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2416 e96182259e1ce23a6271e81658395c89 1158 Pfam PF13514 AAA domain 1 207 1.8E-73 T 14-10-2018 IPR038734 Uncharacterized protein YhaN, AAA domain Thimo_2416 e96182259e1ce23a6271e81658395c89 1158 SUPERFAMILY SSF52540 1 1139 2.28E-18 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2416 e96182259e1ce23a6271e81658395c89 1158 Gene3D G3DSA:3.40.50.300 880 1146 5.9E-16 T 14-10-2018 Thimo_2416 e96182259e1ce23a6271e81658395c89 1158 Gene3D G3DSA:3.40.50.300 1 271 1.2E-12 T 14-10-2018 Thimo_2678 55f6c42912230931530a48e95ff99958 384 ProSitePatterns PS00480 Citrate synthase signature. 267 279 - T 14-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Thimo_2678 55f6c42912230931530a48e95ff99958 384 SUPERFAMILY SSF48256 18 384 1.15E-115 T 14-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Thimo_2678 55f6c42912230931530a48e95ff99958 384 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 17 384 1.0E-145 T 14-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 Thimo_2678 55f6c42912230931530a48e95ff99958 384 Gene3D G3DSA:1.10.580.10 38 364 1.7E-116 T 14-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Thimo_2678 55f6c42912230931530a48e95ff99958 384 PIRSF PIRSF001369 11 384 7.9E-103 T 14-10-2018 IPR024176 Citrate synthase, bacterial-type Thimo_2678 55f6c42912230931530a48e95ff99958 384 Pfam PF00285 Citrate synthase, C-terminal domain 18 366 7.4E-108 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_2678 55f6c42912230931530a48e95ff99958 384 Gene3D G3DSA:1.10.230.10 233 331 1.7E-116 T 14-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Thimo_2678 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 260 280 7.9E-35 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_2678 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 337 351 7.9E-35 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_2678 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 135 148 7.9E-35 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_2678 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 185 200 7.9E-35 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_2678 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 317 333 7.9E-35 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_2678 55f6c42912230931530a48e95ff99958 384 PRINTS PR00143 Citrate synthase signature 207 235 7.9E-35 T 14-10-2018 IPR002020 Citrate synthase GO:0046912 Thimo_0328 859dffc2238a35024240173c9df16955 186 SUPERFAMILY SSF143422 4 143 1.7E-27 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_0328 859dffc2238a35024240173c9df16955 186 Pfam PF01797 Transposase IS200 like 13 85 2.2E-7 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_0328 859dffc2238a35024240173c9df16955 186 Gene3D G3DSA:3.30.70.1290 1 182 1.3E-42 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Thimo_0328 859dffc2238a35024240173c9df16955 186 SMART SM01321 9 137 8.7E-28 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Thimo_1145 0dcf6e9151595533553f5f89584dbcbb 147 Gene3D G3DSA:3.40.190.10 30 147 1.6E-11 T 14-10-2018 Thimo_1145 0dcf6e9151595533553f5f89584dbcbb 147 SUPERFAMILY SSF53850 33 146 5.16E-14 T 14-10-2018 Thimo_2023 f75bb51e4c4899e618ba03658f313eab 319 Pfam PF05598 Transposase domain (DUF772) 27 102 1.1E-17 T 14-10-2018 IPR008490 Transposase InsH, N-terminal Thimo_2023 f75bb51e4c4899e618ba03658f313eab 319 Pfam PF01609 Transposase DDE domain 115 288 4.2E-27 T 14-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 Gene3D G3DSA:3.40.50.1820 27 302 1.3E-59 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00412 Epoxide hydrolase signature 278 300 2.3E-9 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00412 Epoxide hydrolase signature 141 154 2.3E-9 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00412 Epoxide hydrolase signature 82 97 2.3E-9 T 14-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 Pfam PF12697 Alpha/beta hydrolase family 58 295 1.2E-23 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 SUPERFAMILY SSF53474 38 302 2.16E-61 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 247 261 3.1E-20 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 127 140 3.1E-20 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 141 154 3.1E-20 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1111 624b19456c300fff64e2f08c4365f01a 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 97 3.1E-20 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_3247 2e17925dc64019299c63c52a538ed0bb 182 Gene3D G3DSA:1.10.3820.10 3 174 4.3E-31 T 14-10-2018 IPR038266 NapC/NirT cytochrome c superfamily Thimo_3247 2e17925dc64019299c63c52a538ed0bb 182 SUPERFAMILY SSF48695 20 165 4.33E-19 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_3247 2e17925dc64019299c63c52a538ed0bb 182 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 7 167 2.7E-29 T 14-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal Thimo_3247 2e17925dc64019299c63c52a538ed0bb 182 PIRSF PIRSF000013 2 179 4.4E-17 T 14-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 Thimo_0932 bb1abcea47f5206e1a8e6ed5d5814a42 265 Pfam PF10670 Domain of unknown function (DUF4198) 30 236 5.8E-51 T 14-10-2018 IPR019613 Protein of unknown function DUF4198 Thimo_3620 2fbcff236fdb108b5ee6958b581db171 318 PIRSF PIRSF003097 19 314 1.2E-63 T 14-10-2018 IPR004513 Cell division protein FtsX GO:0016021 Thimo_1950 2c6b35ec108d0c29b879506c9e8ab510 780 Pfam PF07793 Protein of unknown function (DUF1631) 16 763 2.4E-189 T 14-10-2018 IPR012434 Protein of unknown function DUF1631 Thimo_0563 1d39111f1ee4161afbde7140ea39111e 393 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 84 324 1.5E-45 T 14-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 Thimo_0563 1d39111f1ee4161afbde7140ea39111e 393 SUPERFAMILY SSF53335 27 384 8.2E-82 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_0563 1d39111f1ee4161afbde7140ea39111e 393 Gene3D G3DSA:3.40.50.12710 12 393 2.8E-112 T 14-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 Thimo_0406 8f06e7f27ff9d813797b38bb473a6a8b 84 Pfam PF07704 Rv0623-like transcription factor 2 83 7.1E-29 T 14-10-2018 IPR011660 Antitoxin VapB-like Thimo_3272 c30240d6932c949956b0901127e953b0 196 SUPERFAMILY SSF53335 12 182 5.78E-33 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3272 c30240d6932c949956b0901127e953b0 196 Pfam PF05175 Methyltransferase small domain 25 190 1.1E-35 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Thimo_3272 c30240d6932c949956b0901127e953b0 196 Gene3D G3DSA:3.40.50.150 12 195 1.1E-41 T 14-10-2018 Thimo_1158 928b61c143add844aa480b8bc3caa590 412 Gene3D G3DSA:1.20.58.340 337 412 1.8E-27 T 14-10-2018 Thimo_1158 928b61c143add844aa480b8bc3caa590 412 Gene3D G3DSA:3.30.460.20 57 222 2.2E-38 T 14-10-2018 Thimo_1158 928b61c143add844aa480b8bc3caa590 412 Gene3D G3DSA:1.20.58.340 223 335 2.9E-37 T 14-10-2018 Thimo_1158 928b61c143add844aa480b8bc3caa590 412 Pfam PF01544 CorA-like Mg2+ transporter protein 116 408 8.5E-70 T 14-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Thimo_1158 928b61c143add844aa480b8bc3caa590 412 SUPERFAMILY SSF144083 348 408 1.44E-19 T 14-10-2018 Thimo_1158 928b61c143add844aa480b8bc3caa590 412 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 115 412 1.3E-75 T 14-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 Thimo_1158 928b61c143add844aa480b8bc3caa590 412 SUPERFAMILY SSF143865 81 347 1.31E-66 T 14-10-2018 Thimo_3446 57be7cf0b470497114a87c3ecb07f170 133 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 21 129 8.0E-33 T 14-10-2018 IPR020358 Uncharacterised protein family Y4oB Thimo_3446 57be7cf0b470497114a87c3ecb07f170 133 Pfam PF09722 Protein of unknown function (DUF2384) 80 132 7.3E-9 T 14-10-2018 IPR024467 Domain of unknown function DUF2384 Thimo_3330 ade3b5dcb2b905e9456104926afa921a 63 Pfam PF11127 Protein of unknown function (DUF2892) 1 61 5.2E-22 T 14-10-2018 IPR021309 Protein of unknown function DUF2892 Thimo_2105 8b3189131c75c95ff29d42c38fdf5627 148 SUPERFAMILY SSF52833 29 105 7.47E-6 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Thimo_2105 8b3189131c75c95ff29d42c38fdf5627 148 Pfam PF04214 Protein of unknown function, DUF 55 123 5.6E-31 T 14-10-2018 IPR007332 Protein of unknown function DUF411 Thimo_2979 59d90f3799a59988ef8cf41dc44b0f7b 188 Pfam PF07298 NnrU protein 4 182 2.2E-48 T 14-10-2018 IPR009915 NnrU domain Thimo_3323 fd2f40dfb52a434cf06dd5b98b641834 154 SUPERFAMILY SSF54690 3 149 2.09E-48 T 14-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Thimo_3323 fd2f40dfb52a434cf06dd5b98b641834 154 Gene3D G3DSA:3.90.1170.40 1 149 2.7E-48 T 14-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Thimo_3323 fd2f40dfb52a434cf06dd5b98b641834 154 Pfam PF02391 MoaE protein 10 120 3.0E-34 T 14-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Thimo_3232 3f43dc94ea5ef5d8a4cb12ed1fdb15e7 114 Pfam PF03206 Nitrogen fixation protein NifW 11 102 8.3E-32 T 14-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 Thimo_3232 3f43dc94ea5ef5d8a4cb12ed1fdb15e7 114 Hamap MF_00529 Nitrogenase-stabilizing/protective protein NifW [nifW]. 4 105 20.843 T 14-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 Thimo_3232 3f43dc94ea5ef5d8a4cb12ed1fdb15e7 114 PIRSF PIRSF005790 1 107 3.7E-32 T 14-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 Thimo_3231 41d597bcb7c63a311cb18e2c41fa512d 153 Pfam PF04319 NifZ domain 3 72 9.7E-32 T 14-10-2018 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 Thimo_2395 05aaa8ebd19208aa4cd9af6071e95e80 295 SUPERFAMILY SSF51445 18 277 1.98E-7 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Thimo_2395 05aaa8ebd19208aa4cd9af6071e95e80 295 Gene3D G3DSA:3.20.20.80 13 280 1.4E-5 T 14-10-2018 Thimo_3165 20e20076b1083fdb718345e9c5c34c2e 1605 Pfam PF05567 Neisseria PilC beta-propeller domain 1034 1393 7.7E-69 T 14-10-2018 IPR008707 PilC beta-propeller domain Thimo_3165 20e20076b1083fdb718345e9c5c34c2e 1605 ProSitePatterns PS00018 EF-hand calcium-binding domain. 1531 1543 - T 14-10-2018 IPR018247 EF-Hand 1, calcium-binding site Thimo_2473 256c09a374c7f2da2dce4f5850dad707 372 Pfam PF01594 AI-2E family transporter 24 351 1.1E-28 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like Thimo_1758 5144112844b0125a403eee014d9f5aa9 418 Gene3D G3DSA:2.60.40.4070 93 171 2.2E-9 T 14-10-2018 Thimo_1758 5144112844b0125a403eee014d9f5aa9 418 Pfam PF13860 FlgD Ig-like domain 102 166 2.2E-8 T 14-10-2018 IPR025965 FlgD Ig-like domain Thimo_3431 134f47acaa16b12d5b7ffe511b6c5cf6 277 SUPERFAMILY SSF161098 5 277 3.4E-70 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_3431 134f47acaa16b12d5b7ffe511b6c5cf6 277 Gene3D G3DSA:1.10.3720.10 6 268 8.8E-62 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_3431 134f47acaa16b12d5b7ffe511b6c5cf6 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 269 1.5E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_2110 94942a47f2d40a53d5ec94a6a6418b68 267 Gene3D G3DSA:3.40.50.1820 37 253 8.3E-23 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_2110 94942a47f2d40a53d5ec94a6a6418b68 267 Pfam PF07819 PGAP1-like protein 93 164 5.2E-6 T 14-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 Thimo_2110 94942a47f2d40a53d5ec94a6a6418b68 267 SUPERFAMILY SSF53474 45 229 2.37E-19 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1675 58c110176b989e23df16e30995c1bfb1 369 Pfam PF12698 ABC-2 family transporter protein 22 360 3.2E-39 T 14-10-2018 Thimo_3520 3c80b0325a8b2a82921b3672501e9876 496 Pfam PF04293 SpoVR like protein 10 440 4.9E-172 T 14-10-2018 IPR007390 Sporulation stage V, protein R Thimo_0942 4152eb2887c057a995ecccacfd14c85a 275 Gene3D G3DSA:1.10.3720.10 11 264 2.7E-48 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0942 4152eb2887c057a995ecccacfd14c85a 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 257 3.1E-15 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Thimo_0942 4152eb2887c057a995ecccacfd14c85a 275 SUPERFAMILY SSF161098 2 258 1.59E-52 T 14-10-2018 IPR035906 MetI-like superfamily Thimo_0305 545771a1957a234438be680cfa3a1c2e 315 Gene3D G3DSA:3.30.70.1900 185 314 2.2E-5 T 14-10-2018 Thimo_0305 545771a1957a234438be680cfa3a1c2e 315 Pfam PF10040 CRISPR-associated endoribonuclease Cas6 187 308 1.3E-10 T 14-10-2018 IPR019267 CRISPR-associated protein Cas6, C-terminal Thimo_2686 a545a0be3b1adca40b6a5fdd0e72a35a 332 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 187 264 1.4E-8 T 14-10-2018 IPR024534 Domain of unknown function DUF2220 Thimo_2686 a545a0be3b1adca40b6a5fdd0e72a35a 332 SUPERFAMILY SSF56726 187 309 8.11E-7 T 14-10-2018 IPR036078 Spo11/DNA topoisomerase VI subunit A superfamily GO:0000737|GO:0003677|GO:0005694 Reactome: R-HSA-912446 Thimo_3756 7c007e4257b47e80863a744f3a4bf24d 370 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 39 249 3.7E-30 T 14-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 Thimo_1889 deba97bf4182975a21f3df331dc29e3d 209 PIRSF PIRSF006170 1 208 3.0E-58 T 14-10-2018 IPR026039 Uncharacterised protein family UPF0070 Thimo_1889 deba97bf4182975a21f3df331dc29e3d 209 SUPERFAMILY SSF48452 37 191 5.61E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1889 deba97bf4182975a21f3df331dc29e3d 209 Gene3D G3DSA:1.25.40.10 93 205 2.9E-7 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Thimo_1889 deba97bf4182975a21f3df331dc29e3d 209 Pfam PF09976 Tetratricopeptide repeat-like domain 15 206 1.8E-54 T 14-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 Thimo_1875 cd1d992d8f38a89ce8a476a676e2e8ed 719 SUPERFAMILY SSF48695 557 703 4.03E-7 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_1875 cd1d992d8f38a89ce8a476a676e2e8ed 719 SUPERFAMILY SSF48695 124 429 1.98E-34 T 14-10-2018 IPR036280 Multiheme cytochrome superfamily Thimo_1875 cd1d992d8f38a89ce8a476a676e2e8ed 719 Gene3D G3DSA:1.10.1130.10 221 426 1.3E-31 T 14-10-2018 Thimo_1244 248c90354cf09c9d183c57c154d963cc 189 Pfam PF14334 Domain of unknown function (DUF4390) 28 185 9.8E-47 T 14-10-2018 IPR025500 Protein of unknown function DUF4390 Thimo_1787 c36895b7c5a2258bc7f3e1bb787cde5a 107 Pfam PF03334 Na+/H+ antiporter subunit 10 91 3.9E-26 T 14-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Thimo_1787 c36895b7c5a2258bc7f3e1bb787cde5a 107 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 10 98 2.0E-28 T 14-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Thimo_2074 3d6a32fd1b33de12525272e317b6d676 149 Gene3D G3DSA:1.20.120.520 2 140 1.9E-7 T 14-10-2018 Thimo_2074 3d6a32fd1b33de12525272e317b6d676 149 Pfam PF01814 Hemerythrin HHE cation binding domain 6 136 3.6E-10 T 14-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Thimo_1502 494c285f3cd05cf3b2039085c73a9304 148 Pfam PF01986 Domain of unknown function DUF123 37 127 1.2E-22 T 14-10-2018 IPR002837 Protein of unknown function DUF123 Thimo_3285 abe1fa7358be22dfe8ebd31b7a1917ae 124 Pfam PF17228 Sulphur globule protein 23 117 7.2E-23 T 14-10-2018 IPR035173 Sulphur globule protein Thimo_0404 cf1fe83eeee7cd1f69ac939250358666 313 Gene3D G3DSA:1.10.10.10 3 91 2.5E-26 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_0404 cf1fe83eeee7cd1f69ac939250358666 313 Pfam PF03466 LysR substrate binding domain 88 297 5.0E-37 T 14-10-2018 IPR005119 LysR, substrate-binding Thimo_0404 cf1fe83eeee7cd1f69ac939250358666 313 SUPERFAMILY SSF46785 3 87 2.52E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_0404 cf1fe83eeee7cd1f69ac939250358666 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 4.0E-18 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Thimo_0404 cf1fe83eeee7cd1f69ac939250358666 313 SUPERFAMILY SSF53850 89 300 6.52E-38 T 14-10-2018 Thimo_0404 cf1fe83eeee7cd1f69ac939250358666 313 Gene3D G3DSA:3.40.190.290 92 297 5.8E-56 T 14-10-2018 Thimo_2805 46cb8b75ea2490900418bc7b1964f9df 345 Gene3D G3DSA:1.10.3470.10 7 342 1.6E-104 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Thimo_2805 46cb8b75ea2490900418bc7b1964f9df 345 SUPERFAMILY SSF81345 7 338 1.7E-81 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Thimo_2805 46cb8b75ea2490900418bc7b1964f9df 345 Pfam PF01032 FecCD transport family 22 337 2.7E-93 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Thimo_2497 b057efeb1c40d6c70c3729a81e33621b 149 Pfam PF02472 Biopolymer transport protein ExbD/TolR 32 147 5.9E-18 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Thimo_2497 b057efeb1c40d6c70c3729a81e33621b 149 Gene3D G3DSA:3.30.420.270 76 143 4.0E-7 T 14-10-2018 Thimo_1716 06949530da2d26257e219d933f0494b7 45 Gene3D G3DSA:1.20.1220.20 1 41 7.9E-7 T 14-10-2018 Thimo_1716 06949530da2d26257e219d933f0494b7 45 Pfam PF01724 Domain of unknown function DUF29 5 33 2.9E-5 T 14-10-2018 IPR002636 Protein from unkown function DUF29 Thimo_3331 fb0038de0be03de6b2e75ebf67c4ca03 250 PRINTS PR01805 VacJ lipoprotein signature 137 154 4.2E-25 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Thimo_3331 fb0038de0be03de6b2e75ebf67c4ca03 250 PRINTS PR01805 VacJ lipoprotein signature 50 66 4.2E-25 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Thimo_3331 fb0038de0be03de6b2e75ebf67c4ca03 250 PRINTS PR01805 VacJ lipoprotein signature 101 118 4.2E-25 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Thimo_3331 fb0038de0be03de6b2e75ebf67c4ca03 250 PRINTS PR01805 VacJ lipoprotein signature 33 46 4.2E-25 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Thimo_3331 fb0038de0be03de6b2e75ebf67c4ca03 250 Pfam PF04333 MlaA lipoprotein 32 224 1.2E-78 T 14-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Thimo_0870 04ce18f46a6af0cc29c2fbce11b5faf0 66 Pfam PF10047 Protein of unknown function (DUF2281) 7 41 1.4E-7 T 14-10-2018 IPR018739 Domain of unknown function DUF2281 Thimo_0458 207ac13fb0d58c88265775930f31b716 81 Pfam PF10387 Protein of unknown function (DUF2442) 3 73 1.9E-16 T 14-10-2018 IPR018841 Protein of unknown function DUF2442 Thimo_0458 207ac13fb0d58c88265775930f31b716 81 SUPERFAMILY SSF143880 2 75 8.11E-15 T 14-10-2018 IPR036782 NE0471-like, N-terminal Thimo_0458 207ac13fb0d58c88265775930f31b716 81 Gene3D G3DSA:3.30.2020.10 1 76 1.6E-6 T 14-10-2018 IPR036782 NE0471-like, N-terminal Thimo_3635 86bd5585c886c877d92ed52a5b5782d0 317 SUPERFAMILY SSF53335 6 216 1.99E-34 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3635 86bd5585c886c877d92ed52a5b5782d0 317 Gene3D G3DSA:3.40.50.150 1 225 4.4E-34 T 14-10-2018 Thimo_3635 86bd5585c886c877d92ed52a5b5782d0 317 Pfam PF08241 Methyltransferase domain 41 140 2.4E-18 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_1329 c424bb0a948625302810aaeac0f17b05 249 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 248 40.035 T 14-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Thimo_1329 c424bb0a948625302810aaeac0f17b05 249 Pfam PF01975 Survival protein SurE 3 182 9.6E-59 T 14-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Thimo_1329 c424bb0a948625302810aaeac0f17b05 249 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 233 1.3E-67 T 14-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Thimo_1329 c424bb0a948625302810aaeac0f17b05 249 Gene3D G3DSA:3.40.1210.10 1 249 7.1E-96 T 14-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Thimo_1329 c424bb0a948625302810aaeac0f17b05 249 SUPERFAMILY SSF64167 1 245 2.49E-85 T 14-10-2018 Thimo_1112 179bb3345c968f55c219f7203302388a 605 Pfam PF13584 Oxygen tolerance 136 385 8.2E-38 T 14-10-2018 IPR025738 Aerotolerance-related protein BatD Thimo_2644 97d2b5b13cd78e6541d2941357950861 163 Pfam PF02674 Colicin V production protein 4 144 1.9E-39 T 14-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 Thimo_0548 36f3cd14150c96abb6b3a78b8e9d5e9a 146 Gene3D G3DSA:3.40.50.1010 4 135 3.9E-10 T 14-10-2018 Thimo_0548 36f3cd14150c96abb6b3a78b8e9d5e9a 146 Pfam PF01850 PIN domain 8 121 3.5E-7 T 14-10-2018 IPR002716 PIN domain Thimo_0548 36f3cd14150c96abb6b3a78b8e9d5e9a 146 SUPERFAMILY SSF88723 7 134 3.64E-16 T 14-10-2018 IPR029060 PIN-like domain superfamily Thimo_3291 d7faf7dc2644a34c375b710a1fab6e70 370 Gene3D G3DSA:3.30.70.1070 265 364 8.8E-12 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Thimo_1700 903a4b49d643348dedb613eb6ff8b4e7 321 Gene3D G3DSA:3.40.50.970 1 321 3.3E-123 T 14-10-2018 Thimo_1700 903a4b49d643348dedb613eb6ff8b4e7 321 SUPERFAMILY SSF52518 4 320 2.16E-98 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Thimo_1700 903a4b49d643348dedb613eb6ff8b4e7 321 Pfam PF00676 Dehydrogenase E1 component 14 311 5.1E-78 T 14-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Thimo_2322 6ea6f7842ca6e616e5e58d0813d67ec8 151 Pfam PF06271 RDD family 11 141 2.3E-24 T 14-10-2018 IPR010432 RDD Thimo_0288 e992c2307d0c079e8c8288c880aaf8a3 535 Pfam PF05036 Sporulation related domain 460 523 6.1E-6 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 Thimo_0288 e992c2307d0c079e8c8288c880aaf8a3 535 SUPERFAMILY SSF110997 460 532 1.07E-5 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Thimo_0956 ea34d793503c58f19b07793c0d0eb1e0 286 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 126 146 - T 14-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Thimo_0956 ea34d793503c58f19b07793c0d0eb1e0 286 Pfam PF00378 Enoyl-CoA hydratase/isomerase 37 209 1.6E-19 T 14-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Thimo_0956 ea34d793503c58f19b07793c0d0eb1e0 286 Gene3D G3DSA:3.90.226.10 3 227 2.3E-74 T 14-10-2018 Thimo_0956 ea34d793503c58f19b07793c0d0eb1e0 286 SUPERFAMILY SSF52096 37 261 3.77E-34 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Thimo_2949 867ed6e3693484f15f475a3989bc7e7b 779 Pfam PF12288 Carboxysome shell peptide mid-region 168 591 1.7E-172 T 14-10-2018 IPR020990 Carboxysome shell protein Thimo_0751 7ca71d40824763e1427b51203dc2c68f 205 Hamap MF_01405 dITP/XTP pyrophosphatase. 8 202 48.106 T 14-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 Thimo_0751 7ca71d40824763e1427b51203dc2c68f 205 SUPERFAMILY SSF52972 10 200 1.73E-68 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_0751 7ca71d40824763e1427b51203dc2c68f 205 Gene3D G3DSA:3.90.950.10 2 204 6.0E-76 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Thimo_0751 7ca71d40824763e1427b51203dc2c68f 205 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 10 200 1.6E-54 T 14-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Thimo_0751 7ca71d40824763e1427b51203dc2c68f 205 Pfam PF01725 Ham1 family 10 198 3.7E-55 T 14-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Thimo_3167 822e8c04b3600397d11709afe75f5811 260 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 16 38 1.7E-5 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3167 822e8c04b3600397d11709afe75f5811 260 Pfam PF16074 Type IV Pilus-assembly protein W 138 257 9.5E-23 T 14-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 Thimo_3167 822e8c04b3600397d11709afe75f5811 260 Pfam PF07963 Prokaryotic N-terminal methylation motif 15 39 2.8E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_3167 822e8c04b3600397d11709afe75f5811 260 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 17 37 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Thimo_1396 01712c9992159026c878703c271969d4 349 Gene3D G3DSA:1.20.1420.30 43 334 1.1E-33 T 14-10-2018 Thimo_1396 01712c9992159026c878703c271969d4 349 Pfam PF01699 Sodium/calcium exchanger protein 13 154 9.0E-10 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Thimo_1396 01712c9992159026c878703c271969d4 349 Pfam PF01699 Sodium/calcium exchanger protein 195 341 3.7E-12 T 14-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Thimo_1396 01712c9992159026c878703c271969d4 349 Gene3D G3DSA:1.20.58.1130 16 226 1.1E-33 T 14-10-2018 Thimo_3695 334b2e0736000ccfdc41aeb4e8a71bf2 383 Pfam PF15609 Phosphoribosyl transferase 26 212 3.5E-57 T 14-10-2018 Thimo_3695 334b2e0736000ccfdc41aeb4e8a71bf2 383 SUPERFAMILY SSF53271 22 181 2.27E-6 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Thimo_3695 334b2e0736000ccfdc41aeb4e8a71bf2 383 PIRSF PIRSF020967 1 372 1.4E-88 T 14-10-2018 IPR011214 Uncharacterised conserved protein UCP020967 Thimo_3695 334b2e0736000ccfdc41aeb4e8a71bf2 383 Pfam PF12500 TRSP domain C terminus to PRTase_2 245 351 2.8E-15 T 14-10-2018 IPR022537 TRSP domain Thimo_3482 ef0922aac47b0b05c4046a8e9da71ad4 88 Pfam PF07027 Protein of unknown function (DUF1318) 14 84 9.9E-18 T 14-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 Thimo_0314 b52a40ca13bde2d61da4d7259f1b7ec3 419 Pfam PF03787 RAMP superfamily 141 317 1.2E-5 T 14-10-2018 IPR005537 CRISPR type III-associated RAMP protein Thimo_0314 b52a40ca13bde2d61da4d7259f1b7ec3 419 TIGRFAM TIGR01898 cas_TM1791_cmr6: CRISPR type III-B/RAMP module RAMP protein Cmr6 127 317 7.5E-24 T 14-10-2018 IPR010172 CRISPR-associated protein, TM1791 Thimo_1320 b3f220fa1297a0a23a1a156b94947701 171 Pfam PF17228 Sulphur globule protein 67 171 1.3E-16 T 14-10-2018 IPR035173 Sulphur globule protein Thimo_1294 faa2eac08f1723cf30c6aed91a28ad3b 593 Pfam PF00474 Sodium:solute symporter family 33 296 1.4E-35 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Thimo_1294 faa2eac08f1723cf30c6aed91a28ad3b 593 Pfam PF00474 Sodium:solute symporter family 392 509 1.4E-15 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Thimo_1294 faa2eac08f1723cf30c6aed91a28ad3b 593 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 7 584 2.3E-260 T 14-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily Thimo_1294 faa2eac08f1723cf30c6aed91a28ad3b 593 Gene3D G3DSA:1.20.1730.10 354 568 5.6E-23 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily Thimo_1294 faa2eac08f1723cf30c6aed91a28ad3b 593 Gene3D G3DSA:1.20.1730.10 4 332 5.4E-36 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily Thimo_1117 5a492906186bd7f71ef922f3ff12a59f 305 Pfam PF01882 Protein of unknown function DUF58 44 128 5.3E-22 T 14-10-2018 IPR002881 Domain of unknown function DUF58 Thimo_1117 5a492906186bd7f71ef922f3ff12a59f 305 SUPERFAMILY SSF53300 80 209 6.23E-5 T 14-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Thimo_0318 63e15beb8935fd633277d1523c7b6754 680 TIGRFAM TIGR02577 cas_TM1794_Cmr2: CRISPR-associated protein Cas10/Cmr2, subtype III-B 371 526 2.5E-27 T 14-10-2018 IPR013407 CRISPR-associated protein Cmr2 Thimo_0318 63e15beb8935fd633277d1523c7b6754 680 Gene3D G3DSA:3.30.70.2230 401 550 1.1E-24 T 14-10-2018 Thimo_0318 63e15beb8935fd633277d1523c7b6754 680 Pfam PF12469 CRISPR-associated protein 19 116 3.2E-14 T 14-10-2018 IPR024615 CRISPR-associated protein Cmr2, N-terminal Thimo_0318 63e15beb8935fd633277d1523c7b6754 680 Gene3D G3DSA:3.30.70.2220 2 158 1.1E-14 T 14-10-2018 IPR038242 Cmr2, N-terminal domain superfamily Thimo_0743 e9f764df38516e9e6d1eb12d4f155b3a 348 Pfam PF13511 Domain of unknown function (DUF4124) 26 88 6.6E-13 T 14-10-2018 IPR025392 Domain of unknown function DUF4124 Thimo_1095 faaf3b6b5e56a92b88699b1186762088 139 SUPERFAMILY SSF64076 17 138 1.18E-32 T 14-10-2018 IPR036748 MTH938-like superfamily Thimo_1095 faaf3b6b5e56a92b88699b1186762088 139 Gene3D G3DSA:3.40.1230.10 18 139 7.9E-35 T 14-10-2018 IPR036748 MTH938-like superfamily Thimo_1095 faaf3b6b5e56a92b88699b1186762088 139 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 30 137 3.2E-28 T 14-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein Thimo_2369 f4b4f14e2ccdc5e5a288a31384130a98 146 SUPERFAMILY SSF53098 3 141 2.4E-59 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_2369 f4b4f14e2ccdc5e5a288a31384130a98 146 Gene3D G3DSA:3.30.420.10 2 146 1.1E-61 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_2369 f4b4f14e2ccdc5e5a288a31384130a98 146 Pfam PF00075 RNase H 5 140 1.6E-50 T 14-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 Thimo_2369 f4b4f14e2ccdc5e5a288a31384130a98 146 Hamap MF_00042 Ribonuclease H [rnhA]. 2 146 34.431 T 14-10-2018 IPR022892 Ribonuclease HI GO:0004523 Thimo_1584 a7fabf56dbf0e38a34d3fd1cc833ad7b 185 SUPERFAMILY SSF81342 4 180 2.2E-38 T 14-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Thimo_1584 a7fabf56dbf0e38a34d3fd1cc833ad7b 185 Pfam PF01292 Prokaryotic cytochrome b561 8 179 1.6E-30 T 14-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Thimo_1266 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 Gene3D G3DSA:3.10.20.280 1 80 1.8E-24 T 14-10-2018 IPR037021 RnfH superfamily Thimo_1266 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 SUPERFAMILY SSF54285 1 75 7.63E-24 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Thimo_1266 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 Pfam PF03658 RnfH family Ubiquitin 1 77 1.4E-29 T 14-10-2018 IPR005346 RnfH protein Thimo_1266 fe8fbba9d48b98e1fcd2290adb5e3b6b 87 Hamap MF_00460 Protein RnfH [rnfH]. 1 83 19.589 T 14-10-2018 IPR005346 RnfH protein Thimo_2065 fa91a236abbd7cf6e92be04f54230752 82 Pfam PF14375 Cysteine-rich CWC 17 63 2.2E-11 T 14-10-2018 IPR032720 Cysteine-rich CWC Thimo_1948 9d1df075ecf120caa79e330bfeb7e5fe 395 Pfam PF01747 ATP-sulfurylase 178 389 4.3E-75 T 14-10-2018 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Thimo_1948 9d1df075ecf120caa79e330bfeb7e5fe 395 Gene3D G3DSA:3.40.50.620 194 395 1.5E-79 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Thimo_1948 9d1df075ecf120caa79e330bfeb7e5fe 395 TIGRFAM TIGR00339 sopT: sulfate adenylyltransferase 4 389 6.6E-126 T 14-10-2018 IPR002650 Sulphate adenylyltransferase GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Thimo_1948 9d1df075ecf120caa79e330bfeb7e5fe 395 Pfam PF14306 PUA-like domain 2 165 3.5E-36 T 14-10-2018 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Thimo_1948 9d1df075ecf120caa79e330bfeb7e5fe 395 Hamap MF_00066 Sulfate adenylyltransferase [sat]. 27 393 46.352 T 14-10-2018 IPR020792 Sulphate adenylyltransferase, prokaryotic-type GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Thimo_1948 9d1df075ecf120caa79e330bfeb7e5fe 395 SUPERFAMILY SSF52374 175 392 8.44E-78 T 14-10-2018 Thimo_1948 9d1df075ecf120caa79e330bfeb7e5fe 395 Gene3D G3DSA:3.10.400.10 1 193 5.6E-62 T 14-10-2018 Thimo_1948 9d1df075ecf120caa79e330bfeb7e5fe 395 SUPERFAMILY SSF88697 1 171 9.94E-43 T 14-10-2018 IPR015947 PUA-like superfamily Thimo_0748 30ef97a579c4c0346950d96a98d5a932 194 Pfam PF02325 YGGT family 16 79 6.3E-20 T 14-10-2018 IPR003425 CCB3/YggT GO:0016020 Thimo_0748 30ef97a579c4c0346950d96a98d5a932 194 Pfam PF02325 YGGT family 110 179 1.2E-17 T 14-10-2018 IPR003425 CCB3/YggT GO:0016020 Thimo_2044 677ebc2c4ae887c853fe83d8c2c73483 206 SMART SM00382 23 201 1.3E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2044 677ebc2c4ae887c853fe83d8c2c73483 206 SUPERFAMILY SSF52540 13 203 6.71E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2044 677ebc2c4ae887c853fe83d8c2c73483 206 Gene3D G3DSA:3.40.50.300 7 206 2.7E-41 T 14-10-2018 Thimo_2044 677ebc2c4ae887c853fe83d8c2c73483 206 Pfam PF00005 ABC transporter 14 152 4.7E-21 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_0355 041348b311cedb3aa1d3d478a1820364 519 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 505 2.6E-165 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Thimo_0355 041348b311cedb3aa1d3d478a1820364 519 PIRSF PIRSF006446 362 519 5.5E-39 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Thimo_0355 041348b311cedb3aa1d3d478a1820364 519 PIRSF PIRSF006446 2 325 2.3E-108 T 14-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Thimo_0600 2272aee18708e0314bf9a4049683eb63 197 Pfam PF07705 CARDB 107 190 2.6E-5 T 14-10-2018 IPR011635 CARDB domain Thimo_3080 45fc4e83800c4333af177c184cb368b4 599 Pfam PF02706 Chain length determinant protein 7 57 9.5E-7 T 14-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 Thimo_1351 fbfc0e18ff1d6070f55cfaceeecf3446 166 Gene3D G3DSA:1.10.8.640 25 109 4.2E-32 T 14-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily Thimo_1351 fbfc0e18ff1d6070f55cfaceeecf3446 166 Pfam PF03918 Cytochrome C biogenesis protein 16 153 5.2E-48 T 14-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family Thimo_1413 b914414563cbb7b0e0a5732b0b0aa2e2 268 Pfam PF01435 Peptidase family M48 65 253 2.5E-38 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Thimo_0737 dfca2071b538cd7a2cc6e900d6eddee8 271 SUPERFAMILY SSF101386 5 107 2.04E-26 T 14-10-2018 Thimo_0737 dfca2071b538cd7a2cc6e900d6eddee8 271 TIGRFAM TIGR00444 mazG: MazG family protein 13 262 2.0E-93 T 14-10-2018 IPR011551 NTP pyrophosphohydrolase MazG Thimo_0737 dfca2071b538cd7a2cc6e900d6eddee8 271 Gene3D G3DSA:1.10.287.1080 136 267 2.7E-40 T 14-10-2018 Thimo_0737 dfca2071b538cd7a2cc6e900d6eddee8 271 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 2.1E-29 T 14-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Thimo_0737 dfca2071b538cd7a2cc6e900d6eddee8 271 Gene3D G3DSA:1.10.287.1080 4 128 7.7E-49 T 14-10-2018 Thimo_0737 dfca2071b538cd7a2cc6e900d6eddee8 271 SUPERFAMILY SSF101386 143 241 3.55E-21 T 14-10-2018 Thimo_3564 016ccf5b8fffc68b90faf8bb2c7193bf 493 Pfam PF02666 Phosphatidylserine decarboxylase 255 457 1.2E-41 T 14-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Thimo_0633 aaec29798aa9a4516ec9e1859168e9be 108 Gene3D G3DSA:2.20.130.30 35 108 3.1E-26 T 14-10-2018 Thimo_0633 aaec29798aa9a4516ec9e1859168e9be 108 Pfam PF11191 Protein of unknown function (DUF2782) 27 108 6.1E-28 T 14-10-2018 IPR021357 Protein of unknown function DUF2782 Thimo_2443 9831a1db8e270d03c1fdc6023a83d681 189 Pfam PF03729 Short repeat of unknown function (DUF308) 24 93 1.4E-6 T 14-10-2018 IPR005325 Protein of unknown function DUF308, membrane Thimo_1590 d2ec355de131cd369084cf84eed52c50 167 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 2 167 6.1E-69 T 14-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria Thimo_1590 d2ec355de131cd369084cf84eed52c50 167 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 167 83.766 T 14-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria Thimo_1590 d2ec355de131cd369084cf84eed52c50 167 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 9.6E-33 T 14-10-2018 IPR005134 Uncharacterised protein family UPF0114 Thimo_3225 ce01c022172af2413f791f7e5e31b332 89 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 83 1.8E-24 T 14-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system Thimo_3225 ce01c022172af2413f791f7e5e31b332 89 Gene3D G3DSA:3.10.450.530 1 86 1.1E-16 T 14-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily Thimo_0312 dce56526b4fb141099cf7f9151fbbc0a 1337 SUPERFAMILY SSF52540 288 661 6.39E-8 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0312 dce56526b4fb141099cf7f9151fbbc0a 1337 SMART SM00382 297 767 0.0036 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_2458 a70c7774d0dc71debc083fe2b25d3572 250 Gene3D G3DSA:1.10.10.1320 10 102 3.5E-8 T 14-10-2018 Thimo_2458 a70c7774d0dc71debc083fe2b25d3572 250 Pfam PF13490 Putative zinc-finger 6 41 3.9E-8 T 14-10-2018 IPR027383 Putative zinc-finger Thimo_2015 b27aa5ee951e65134d43980804c7ef3a 362 Pfam PF01594 AI-2E family transporter 25 351 2.4E-29 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like Thimo_0104 a260dd7f13f66134a5fbb74729a741ae 132 Pfam PF00816 H-NS histone family 17 108 2.5E-14 T 14-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 Thimo_3631 c33efe93db6d39d47ee73c7aaf9b9f7a 322 Pfam PF00753 Metallo-beta-lactamase superfamily 25 229 8.8E-21 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_3631 c33efe93db6d39d47ee73c7aaf9b9f7a 322 SUPERFAMILY SSF56281 6 248 5.77E-54 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3631 c33efe93db6d39d47ee73c7aaf9b9f7a 322 Gene3D G3DSA:3.60.15.10 8 269 1.8E-61 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Thimo_3631 c33efe93db6d39d47ee73c7aaf9b9f7a 322 SMART SM00849 24 229 2.6E-28 T 14-10-2018 IPR001279 Metallo-beta-lactamase Thimo_3441 6274cdf8cda83c9ae6059e55677bca38 224 SUPERFAMILY SSF53335 29 214 9.36E-29 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_3441 6274cdf8cda83c9ae6059e55677bca38 224 Pfam PF08242 Methyltransferase domain 49 146 6.9E-14 T 14-10-2018 IPR013217 Methyltransferase type 12 Thimo_3441 6274cdf8cda83c9ae6059e55677bca38 224 Gene3D G3DSA:3.40.50.150 8 219 1.5E-28 T 14-10-2018 Thimo_2523 e03006dae66c4c6c98ae6f847e03604b 254 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 33 188 1.0E-6 T 14-10-2018 Thimo_2523 e03006dae66c4c6c98ae6f847e03604b 254 Pfam PF14145 YrhK-like protein 26 81 3.0E-12 T 14-10-2018 IPR025424 YrhK domain Thimo_2523 e03006dae66c4c6c98ae6f847e03604b 254 Pfam PF14145 YrhK-like protein 96 151 8.8E-12 T 14-10-2018 IPR025424 YrhK domain Thimo_1886 bace550c75052696a444c8bbf6990933 117 SUPERFAMILY SSF46785 4 86 6.68E-26 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1886 bace550c75052696a444c8bbf6990933 117 Pfam PF01022 Bacterial regulatory protein, arsR family 15 59 1.3E-16 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1886 bace550c75052696a444c8bbf6990933 117 SMART SM00418 7 85 1.4E-27 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1886 bace550c75052696a444c8bbf6990933 117 Gene3D G3DSA:1.10.10.10 3 100 7.9E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Thimo_1886 bace550c75052696a444c8bbf6990933 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 3.0E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1886 bace550c75052696a444c8bbf6990933 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 3.0E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1886 bace550c75052696a444c8bbf6990933 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 3.0E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1886 bace550c75052696a444c8bbf6990933 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 3.0E-19 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Thimo_1815 22b774ff9b243b9fd6fdf20828e41d23 317 Pfam PF03773 Predicted permease 22 311 4.2E-64 T 14-10-2018 IPR005524 Predicted permease DUF318 Thimo_1390 f2f8e0427f695191dd0b15dec0fc6923 128 Gene3D G3DSA:1.20.120.660 7 100 2.1E-5 T 14-10-2018 Thimo_1390 f2f8e0427f695191dd0b15dec0fc6923 128 SUPERFAMILY SSF47240 12 94 1.13E-21 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_1390 f2f8e0427f695191dd0b15dec0fc6923 128 TIGRFAM TIGR04535 ferrit_encaps: ferritin-like protein 9 125 3.2E-40 T 14-10-2018 IPR030907 Ferritin-like protein Thimo_1960 13ad5b14dffb32c130c49abcb0410cd3 247 Pfam PF12872 OST-HTH/LOTUS domain 165 231 1.5E-14 T 14-10-2018 IPR025605 OST-HTH/LOTUS domain Thimo_1960 13ad5b14dffb32c130c49abcb0410cd3 247 Pfam PF01936 NYN domain 8 141 3.5E-30 T 14-10-2018 IPR021139 NYN domain, limkain-b1-type Thimo_1960 13ad5b14dffb32c130c49abcb0410cd3 247 Gene3D G3DSA:1.10.10.1880 170 242 6.3E-26 T 14-10-2018 Thimo_1960 13ad5b14dffb32c130c49abcb0410cd3 247 Gene3D G3DSA:3.40.50.1010 1 145 1.9E-11 T 14-10-2018 Thimo_0966 9b2e04e63737a76565fe856401c3a5e2 181 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 50 2.2E-12 T 14-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Thimo_0966 9b2e04e63737a76565fe856401c3a5e2 181 Pfam PF09723 Zinc ribbon domain 1 38 5.9E-9 T 14-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Thimo_0966 9b2e04e63737a76565fe856401c3a5e2 181 SMART SM00834 1 43 1.4E-8 T 14-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Thimo_1106 b842f63f7736c62cb4e0442b3137c244 277 Pfam PF00005 ABC transporter 43 191 4.2E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Thimo_1106 b842f63f7736c62cb4e0442b3137c244 277 SUPERFAMILY SSF52540 28 238 1.73E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1106 b842f63f7736c62cb4e0442b3137c244 277 Gene3D G3DSA:3.40.50.300 26 275 1.2E-53 T 14-10-2018 Thimo_1106 b842f63f7736c62cb4e0442b3137c244 277 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Thimo_1106 b842f63f7736c62cb4e0442b3137c244 277 SMART SM00382 51 240 1.0E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Thimo_3466 5ea3393d324b2edef0c584deed1c90d7 95 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 42 74 6.1E-8 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Thimo_0996 3b41714965385558a554e7f034599b6b 319 SUPERFAMILY SSF52540 7 289 1.72E-17 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_1225 e1c37e43162515e807af932a8d31f827 156 SUPERFAMILY SSF55826 5 147 3.27E-26 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Thimo_1225 e1c37e43162515e807af932a8d31f827 156 Gene3D G3DSA:3.90.960.10 16 154 7.1E-35 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Thimo_1225 e1c37e43162515e807af932a8d31f827 156 Pfam PF04073 Aminoacyl-tRNA editing domain 26 142 4.0E-17 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Thimo_2516 b22ecde723f0c8f71a832eae6ef6da8b 210 Pfam PF08856 Protein of unknown function (DUF1826) 21 205 1.3E-56 T 14-10-2018 IPR014955 Protein of unknown function DUF1826 Thimo_1763 d01ffa547655d5b21c929e27aad644ef 163 Pfam PF09828 Chromate resistance exported protein 35 161 6.0E-34 T 14-10-2018 IPR018634 Chromate resistance exported protein Thimo_1829 3a2023c4980b793a2048ad9dc13b3e16 126 Pfam PF16137 Domain of unknown function (DUF4845) 32 117 1.4E-20 T 14-10-2018 IPR032314 Protein of unknown function DUF4845 Thimo_1790 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 1.1E-17 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1790 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 131 150 1.1E-17 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1790 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 161 185 1.1E-17 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1790 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 234 258 1.1E-17 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1790 c07ca7943a6548bfc309c9f848b3b719 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 325 344 1.1E-17 T 14-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1790 c07ca7943a6548bfc309c9f848b3b719 508 Pfam PF00361 Proton-conducting membrane transporter 126 419 2.5E-44 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_3689 57301d3335b9b0d3dc8b506b97f07539 499 Gene3D G3DSA:1.10.510.10 124 361 1.8E-13 T 14-10-2018 Thimo_3689 57301d3335b9b0d3dc8b506b97f07539 499 SUPERFAMILY SSF56112 143 261 2.77E-15 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_3689 57301d3335b9b0d3dc8b506b97f07539 499 Pfam PF00069 Protein kinase domain 150 261 3.0E-8 T 14-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Thimo_1126 419f34a5908f25914b7ed2d1a1d61615 306 Pfam PF01136 Peptidase family U32 95 269 6.4E-17 T 14-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Thimo_3073 5880f14c61ac4585f5d4f415a5a2ae08 262 Gene3D G3DSA:3.90.550.10 5 214 5.8E-26 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Thimo_1910 bfbb3a87d6850f1af1bd0e65c269e98e 89 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 45 6.0E-9 T 14-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Thimo_1910 bfbb3a87d6850f1af1bd0e65c269e98e 89 SUPERFAMILY SSF47598 6 46 3.26E-8 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Thimo_1929 f978f7a1c482c4a95ad6c6bda3daacd5 318 PIRSF PIRSF016660 1 313 1.5E-114 T 14-10-2018 IPR008526 Inner membrane protein YedI Thimo_1929 f978f7a1c482c4a95ad6c6bda3daacd5 318 Pfam PF05661 Protein of unknown function (DUF808) 4 302 4.5E-112 T 14-10-2018 IPR008526 Inner membrane protein YedI Thimo_2715 0387cdadb92c5931c009d2b6476afd1d 293 PIRSF PIRSF030850 1 293 4.0E-45 T 14-10-2018 IPR011396 Uncharacterised conserved protein UCP030850 Thimo_2499 9a9aa47862021990da1ed877fc309513 252 Pfam PF01618 MotA/TolQ/ExbB proton channel family 92 216 1.7E-30 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Thimo_1531 ee08ce92a443569ae782f045df70c891 151 Pfam PF17228 Sulphur globule protein 26 101 7.4E-12 T 14-10-2018 IPR035173 Sulphur globule protein Thimo_0164 61d290c26106d40201f6b8c86f56f630 66 Pfam PF14255 Cysteine-rich CPXCG 10 54 3.9E-20 T 14-10-2018 IPR025990 Cysteine-rich CPXCG protein Thimo_1719 9173b173dd5e68d90ee58877b8cbf2ec 92 SUPERFAMILY SSF143011 1 92 1.92E-13 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_1719 9173b173dd5e68d90ee58877b8cbf2ec 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 25 92 4.2E-15 T 14-10-2018 IPR007711 Toxin HigB-1 Thimo_1719 9173b173dd5e68d90ee58877b8cbf2ec 92 Gene3D G3DSA:3.30.2310.20 1 92 1.5E-21 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_2089 adeeee0617882847648231cf90e134b0 366 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 341 1.3E-87 T 14-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Thimo_2089 adeeee0617882847648231cf90e134b0 366 SUPERFAMILY SSF51395 6 362 2.81E-129 T 14-10-2018 Thimo_2089 adeeee0617882847648231cf90e134b0 366 Gene3D G3DSA:3.20.20.70 7 365 2.6E-146 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Thimo_1965 1b2988533264d4429c8a60374671e84b 956 Pfam PF03993 Domain of Unknown Function (DUF349) 616 671 2.4E-5 T 14-10-2018 IPR007139 Protein of unknown function DUF349 Thimo_1965 1b2988533264d4429c8a60374671e84b 956 Pfam PF03993 Domain of Unknown Function (DUF349) 682 754 2.6E-15 T 14-10-2018 IPR007139 Protein of unknown function DUF349 Thimo_1965 1b2988533264d4429c8a60374671e84b 956 Pfam PF03993 Domain of Unknown Function (DUF349) 532 606 2.6E-15 T 14-10-2018 IPR007139 Protein of unknown function DUF349 Thimo_2517 b4bc234910d277c061b34b5f341aafe7 218 Pfam PF08856 Protein of unknown function (DUF1826) 21 217 7.4E-62 T 14-10-2018 IPR014955 Protein of unknown function DUF1826 Thimo_1788 eea0edf741495483eece19c7ffa2d2f9 90 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 33 83 5.4E-21 T 14-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Thimo_1788 eea0edf741495483eece19c7ffa2d2f9 90 PIRSF PIRSF028784 1 90 2.0E-26 T 14-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Thimo_1697 ef2fc24a517fa307e27156bd8cc1e02f 512 Gene3D G3DSA:3.90.76.10 50 192 4.4E-88 T 14-10-2018 Thimo_1697 ef2fc24a517fa307e27156bd8cc1e02f 512 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 92 408 1.8E-48 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain Thimo_1697 ef2fc24a517fa307e27156bd8cc1e02f 512 SUPERFAMILY SSF53850 33 496 2.35E-98 T 14-10-2018 Thimo_1697 ef2fc24a517fa307e27156bd8cc1e02f 512 PIRSF PIRSF002741 16 502 1.7E-67 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Thimo_1697 ef2fc24a517fa307e27156bd8cc1e02f 512 Gene3D G3DSA:3.10.105.10 266 479 4.4E-88 T 14-10-2018 Thimo_1697 ef2fc24a517fa307e27156bd8cc1e02f 512 Gene3D G3DSA:3.40.190.10 193 489 4.4E-88 T 14-10-2018 Thimo_3156 5379e121bee43b5f4f97aa4b6a4daf73 204 Pfam PF03006 Haemolysin-III related 4 197 6.5E-41 T 14-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 Thimo_3156 5379e121bee43b5f4f97aa4b6a4daf73 204 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 5 203 7.5E-62 T 14-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 Thimo_3733 703a6592ae4bbfb67e88e66de1e0bf73 166 Pfam PF04002 RadC-like JAB domain 47 164 8.5E-39 T 14-10-2018 IPR025657 RadC-like JAB domain Thimo_3733 703a6592ae4bbfb67e88e66de1e0bf73 166 Gene3D G3DSA:3.40.140.10 44 166 1.0E-36 T 14-10-2018 Thimo_2385 1b9e6a1e85280a9bacf9025c6349d712 172 Pfam PF02620 Uncharacterized ACR, COG1399 60 149 1.3E-11 T 14-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD Thimo_0411 1f4eabe77ed868fdee7126df6605c06f 305 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 290 1.9E-54 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Thimo_0411 1f4eabe77ed868fdee7126df6605c06f 305 PIRSF PIRSF026649 2 299 1.8E-83 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Thimo_3605 6d50609bfbac22d509643ef8fe13a4fe 70 SUPERFAMILY SSF57716 5 62 1.13E-18 T 14-10-2018 Thimo_3605 6d50609bfbac22d509643ef8fe13a4fe 70 Gene3D G3DSA:3.30.50.10 1 65 1.2E-20 T 14-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 Thimo_3605 6d50609bfbac22d509643ef8fe13a4fe 70 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 4 66 17.644 T 14-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 Thimo_3605 6d50609bfbac22d509643ef8fe13a4fe 70 Pfam PF03884 DNA gyrase inhibitor YacG 8 54 1.3E-20 T 14-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 Thimo_3205 0a3dbc4d057ecb001e416a654f3685cb 237 ProDom PD037531 MEMBRANE HYDROGENASE SUBUNIT COMPONENT HYDROGENASE-4 E OXIDOREDUCTASE PRECURSOR SIGNAL 1.-.-.- 62 201 3.0E-31 T 14-10-2018 Thimo_0938 73ec820963a0a06dba4580d2563ee7a1 260 Pfam PF07103 Protein of unknown function (DUF1365) 5 243 7.5E-60 T 14-10-2018 IPR010775 Protein of unknown function DUF1365 Thimo_0258 c518cb80fc1ff8695a770125f596e6d4 178 SUPERFAMILY SSF47240 4 166 1.81E-23 T 14-10-2018 IPR009078 Ferritin-like superfamily Thimo_0258 c518cb80fc1ff8695a770125f596e6d4 178 Pfam PF02915 Rubrerythrin 10 154 2.5E-15 T 14-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Thimo_0258 c518cb80fc1ff8695a770125f596e6d4 178 Gene3D G3DSA:1.20.1260.10 4 161 2.4E-27 T 14-10-2018 IPR012347 Ferritin-like Thimo_1621 affe960dfaddfbfc696b5209b6efb839 208 Pfam PF00154 recA bacterial DNA recombination protein 33 120 4.2E-7 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Thimo_1621 affe960dfaddfbfc696b5209b6efb839 208 Gene3D G3DSA:3.40.50.300 31 200 6.9E-12 T 14-10-2018 Thimo_1621 affe960dfaddfbfc696b5209b6efb839 208 SUPERFAMILY SSF52540 34 148 1.49E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0353 00006a4c6e8e122ee03660943c590724 442 SUPERFAMILY SSF56112 102 314 5.36E-18 T 14-10-2018 IPR011009 Protein kinase-like domain superfamily Thimo_0353 00006a4c6e8e122ee03660943c590724 442 Pfam PF03109 ABC1 family 119 234 7.2E-30 T 14-10-2018 IPR004147 UbiB domain Thimo_3572 40cf9daf4449dbccf001080827d4e19d 96 Gene3D G3DSA:1.10.10.1150 4 91 8.3E-9 T 14-10-2018 Thimo_3572 40cf9daf4449dbccf001080827d4e19d 96 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 23 89 1.7E-21 T 14-10-2018 IPR008792 Coenzyme PQQ synthesis D Thimo_2237 32a4481b0e45c3f89c91e2dbfe0df7ed 402 Pfam PF05940 NnrS protein 18 396 5.8E-106 T 14-10-2018 IPR010266 NnrS Thimo_0995 8e835a95c9483cd7c9572be2b1ff15e1 353 Pfam PF13524 Glycosyl transferases group 1 253 330 9.4E-20 T 14-10-2018 Thimo_0995 8e835a95c9483cd7c9572be2b1ff15e1 353 SUPERFAMILY SSF53756 68 336 1.81E-7 T 14-10-2018 Thimo_2020 db27eb7b5f09537a217d1321895748a9 524 SUPERFAMILY SSF47090 38 105 5.96E-6 T 14-10-2018 IPR036365 PGBD-like superfamily Thimo_3786 3f09d0a806d749a4201bd1d58871a8ab 190 Pfam PF08747 Domain of unknown function (DUF1788) 96 187 2.3E-10 T 14-10-2018 IPR014858 Protein of unknown function DUF1788 Thimo_1107 43eaa88ef26be80fa931f40cf33f7eef 386 Pfam PF02405 Permease MlaE 173 379 1.2E-69 T 14-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 Thimo_1107 43eaa88ef26be80fa931f40cf33f7eef 386 SUPERFAMILY SSF52091 16 106 1.14E-5 T 14-10-2018 IPR036513 STAS domain superfamily Thimo_1107 43eaa88ef26be80fa931f40cf33f7eef 386 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 147 380 8.4E-64 T 14-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Thimo_1738 6df03e3b77ca2291a3b9e7f96670042c 130 Pfam PF07509 Protein of unknown function (DUF1523) 45 117 4.6E-18 T 14-10-2018 IPR011088 Bacteriophage phiNM3, A0EWY4 Thimo_3411 5f28a3c84bbd0ca62d81eb6737051d16 73 SUPERFAMILY SSF47598 3 54 2.45E-6 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Thimo_0921 6c0c4698c141f7c989a24ce859343ecb 347 Pfam PF01040 UbiA prenyltransferase family 78 318 2.4E-38 T 14-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Thimo_0921 6c0c4698c141f7c989a24ce859343ecb 347 Gene3D G3DSA:1.20.120.1780 238 343 1.9E-6 T 14-10-2018 Thimo_0921 6c0c4698c141f7c989a24ce859343ecb 347 TIGRFAM TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase 64 340 1.6E-108 T 14-10-2018 IPR006372 Bacteriochlorophyll/chlorophyll synthetase Thimo_0921 6c0c4698c141f7c989a24ce859343ecb 347 Gene3D G3DSA:1.10.357.140 65 216 4.5E-13 T 14-10-2018 Thimo_0779 a98e8bf09a78768b209bf833a45d373d 521 Pfam PF17482 Phage tail sheath C-terminal domain 411 514 4.0E-10 T 14-10-2018 IPR020287 Tail sheath protein, C-terminal domain Thimo_0779 a98e8bf09a78768b209bf833a45d373d 521 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 228 402 5.6E-10 T 14-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain Thimo_3630 bb83b4fc0c9cb3367a7515433c047af2 168 Gene3D G3DSA:1.20.120.1630 3 167 1.0E-23 T 14-10-2018 Thimo_3630 bb83b4fc0c9cb3367a7515433c047af2 168 Pfam PF04191 Phospholipid methyltransferase 86 149 4.5E-6 T 14-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 Thimo_2370 1f725ecfb9505a39b8c4c3c5d1b01b78 275 SUPERFAMILY SSF53335 83 196 2.0E-16 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Thimo_2370 1f725ecfb9505a39b8c4c3c5d1b01b78 275 Gene3D G3DSA:3.40.50.150 14 196 1.0E-15 T 14-10-2018 Thimo_2370 1f725ecfb9505a39b8c4c3c5d1b01b78 275 Pfam PF08241 Methyltransferase domain 87 135 2.3E-8 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Thimo_3729 7dcc7dddbb89209870aa8d56778e8d6e 107 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 7 98 1.0E-13 T 14-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Thimo_3729 7dcc7dddbb89209870aa8d56778e8d6e 107 Gene3D G3DSA:3.30.2310.20 1 99 3.1E-17 T 14-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Thimo_1305 4061e3dd9bbd8d7a90b34ff9d6628d53 477 Pfam PF03600 Citrate transporter 53 416 6.7E-49 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Thimo_1736 fcaf6768f9f237a5a5059b2555efc494 687 Pfam PF07793 Protein of unknown function (DUF1631) 15 683 6.5E-126 T 14-10-2018 IPR012434 Protein of unknown function DUF1631 Thimo_0307 5b1f9aa2b885a1ffc0cf7f321162436e 101 Gene3D G3DSA:3.30.460.10 6 97 2.2E-5 T 14-10-2018 Thimo_1099 ab49595a3908f52f746c3e07016b49ff 360 PIRSF PIRSF005211 1 327 1.5E-87 T 14-10-2018 IPR012020 AB hydrolase 4 family Thimo_1099 ab49595a3908f52f746c3e07016b49ff 360 Gene3D G3DSA:3.40.50.1820 50 299 2.7E-26 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1099 ab49595a3908f52f746c3e07016b49ff 360 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 221 262 - T 14-10-2018 IPR000952 AB hydrolase 4, conserved site Thimo_1099 ab49595a3908f52f746c3e07016b49ff 360 SUPERFAMILY SSF53474 9 306 1.06E-34 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Thimo_1099 ab49595a3908f52f746c3e07016b49ff 360 Pfam PF00561 alpha/beta hydrolase fold 59 295 6.8E-13 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Thimo_1369 90b5ac1c48f008f88609bcab4856cf57 530 Pfam PF02470 MlaD protein 171 229 8.2E-7 T 14-10-2018 IPR003399 Mce/MlaD Thimo_1369 90b5ac1c48f008f88609bcab4856cf57 530 Pfam PF02470 MlaD protein 298 398 4.3E-13 T 14-10-2018 IPR003399 Mce/MlaD Thimo_1369 90b5ac1c48f008f88609bcab4856cf57 530 Pfam PF02470 MlaD protein 54 144 1.3E-11 T 14-10-2018 IPR003399 Mce/MlaD Thimo_2476 3bc7c296d06697ff67ddb9a0f4107c98 72 Pfam PF11127 Protein of unknown function (DUF2892) 7 65 4.5E-21 T 14-10-2018 IPR021309 Protein of unknown function DUF2892 Thimo_1024 dbcd142acda9cf148b9ca531ebd51bfc 89 Pfam PF12441 CopG antitoxin of type II toxin-antitoxin system 14 78 3.2E-7 T 14-10-2018 IPR022148 CopG antitoxin Thimo_0195 61f7b0c5d8f5ac67498a9dbfa48f79ee 352 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 3 338 9.5E-115 T 14-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 Thimo_0195 61f7b0c5d8f5ac67498a9dbfa48f79ee 352 Gene3D G3DSA:3.75.10.10 2 347 9.2E-124 T 14-10-2018 Thimo_0195 61f7b0c5d8f5ac67498a9dbfa48f79ee 352 SUPERFAMILY SSF55909 3 339 2.5E-117 T 14-10-2018 Thimo_1794 ccd5cc54cf24adf9fbfea04d3e15c152 79 SUPERFAMILY SSF46785 1 73 3.92E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Thimo_1794 ccd5cc54cf24adf9fbfea04d3e15c152 79 Pfam PF09012 FeoC like transcriptional regulator 2 70 3.2E-20 T 14-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC Thimo_1473 d7a2a73fe6bdb65d98b49bea14e74298 110 PIRSF PIRSF028538 1 109 8.3E-43 T 14-10-2018 IPR014949 Protein of unknown function DUF1820 Thimo_1473 d7a2a73fe6bdb65d98b49bea14e74298 110 Pfam PF08850 Domain of unknown function (DUF1820) 3 98 8.5E-43 T 14-10-2018 IPR014949 Protein of unknown function DUF1820 Thimo_0733 d813df138bdc7de9f5ce7dcb03713deb 190 Hamap MF_00052_B Ribonuclease HII [rnhB]. 2 181 36.866 T 14-10-2018 IPR022898 Ribonuclease HII GO:0004523 Thimo_0733 d813df138bdc7de9f5ce7dcb03713deb 190 Pfam PF01351 Ribonuclease HII 4 180 1.4E-38 T 14-10-2018 IPR024567 Ribonuclease HII/HIII domain Thimo_0733 d813df138bdc7de9f5ce7dcb03713deb 190 SUPERFAMILY SSF53098 2 186 2.73E-64 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0733 d813df138bdc7de9f5ce7dcb03713deb 190 Gene3D G3DSA:3.30.420.10 1 190 1.8E-70 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Thimo_1392 dcba9185620dcf49a5608ee2a4987569 217 Pfam PF14342 Domain of unknown function (DUF4396) 73 204 9.6E-34 T 14-10-2018 IPR025509 Domain of unknown function DUF4396 Thimo_0775 201e31b99aba6dceb237de6f5ec4613a 216 Gene3D G3DSA:1.20.950.20 56 173 2.1E-6 T 14-10-2018 Thimo_0775 201e31b99aba6dceb237de6f5ec4613a 216 SUPERFAMILY SSF103501 8 201 4.05E-26 T 14-10-2018 IPR036197 NarG-like superfamily Thimo_3571 cc356cecbfd691489334a51be6b98993 143 Pfam PF13471 Transglutaminase-like superfamily 33 141 2.2E-26 T 14-10-2018 IPR032708 Microcin J25-processing protein McjB, C-terminal Thimo_1109 b898920678c8297f1b3cee191da7ea2e 375 Pfam PF07907 YibE/F-like protein 125 362 3.9E-68 T 14-10-2018 IPR012507 YibE/F-like Thimo_2727 0a630e704c34e2a9189c6d4b96ef8619 73 Pfam PF01402 Ribbon-helix-helix protein, copG family 5 40 1.6E-6 T 14-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Thimo_2727 0a630e704c34e2a9189c6d4b96ef8619 73 Gene3D G3DSA:1.10.1220.10 1 45 2.7E-6 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Thimo_2152 64d9e6575b9d84f04a2e2784e0353c64 304 SUPERFAMILY SSF103481 206 294 1.31E-5 T 14-10-2018 Thimo_2152 64d9e6575b9d84f04a2e2784e0353c64 304 SUPERFAMILY SSF103481 71 150 8.37E-7 T 14-10-2018 Thimo_0391 e45f5b6e5789df0862d80bb01f3bb124 328 SUPERFAMILY SSF103190 41 143 8.63E-9 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Thimo_0391 e45f5b6e5789df0862d80bb01f3bb124 328 Gene3D G3DSA:3.30.450.20 1 137 5.8E-11 T 14-10-2018 Thimo_0486 7ca470079e576df4f2c52f331ca8c3c7 675 Pfam PF04632 Fusaric acid resistance protein family 9 666 5.2E-172 T 14-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 Thimo_1402 0922e2564a0ac01ded5ecf9627fa91d9 225 SMART SM00388 32 98 0.0016 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Thimo_1402 0922e2564a0ac01ded5ecf9627fa91d9 225 Gene3D G3DSA:1.10.287.130 19 94 2.7E-6 T 14-10-2018 Thimo_1402 0922e2564a0ac01ded5ecf9627fa91d9 225 SUPERFAMILY SSF47384 31 94 1.57E-6 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Thimo_0313 d3ac8c87b01af1e4fdffe4373bb68f19 620 Pfam PF13289 SIR2-like domain 175 313 2.5E-6 T 14-10-2018 IPR039444 SIR2-like domain Thimo_0386 f138ee2a464b8e7bf4f1d1962d992e70 150 Pfam PF12276 Protein of unknown function (DUF3617) 4 149 3.6E-17 T 14-10-2018 IPR022061 Protein of unknown function DUF3617 Thimo_3342 bbf2cae6083db31a89ee499c39468ac6 220 SUPERFAMILY SSF103501 10 215 2.48E-32 T 14-10-2018 IPR036197 NarG-like superfamily Thimo_2908 a63f63267789d05ce46114a54b9fb79a 286 Pfam PF01553 Acyltransferase 57 197 3.8E-14 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Thimo_2908 a63f63267789d05ce46114a54b9fb79a 286 SUPERFAMILY SSF69593 54 252 3.53E-20 T 14-10-2018 Thimo_2908 a63f63267789d05ce46114a54b9fb79a 286 SMART SM00563 68 200 1.0E-15 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Thimo_1653 3067506073c6a858c42f3640625a2593 109 Pfam PF11743 Protein of unknown function (DUF3301) 8 98 2.2E-27 T 14-10-2018 IPR021732 Protein of unknown function DUF3301 Thimo_2917 ead8b0f68ff7ef590d2c279f88ef2189 247 Pfam PF02698 DUF218 domain 59 182 3.4E-20 T 14-10-2018 IPR003848 Domain of unknown function DUF218 Thimo_1446 faee2e4894363ece0301d2a2ed60c1c7 242 Pfam PF09335 SNARE associated Golgi protein 79 197 2.9E-10 T 14-10-2018 IPR032816 SNARE associated Golgi protein Thimo_2907 f366d3df7e61ee67f5ba559ae635de47 242 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 15 236 36.849 T 14-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2907 f366d3df7e61ee67f5ba559ae635de47 242 Gene3D G3DSA:1.10.3810.10 64 238 1.2E-52 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2907 f366d3df7e61ee67f5ba559ae635de47 242 SUPERFAMILY SSF53955 64 234 1.01E-58 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Thimo_2907 f366d3df7e61ee67f5ba559ae635de47 242 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 16 233 7.4E-73 T 14-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_2907 f366d3df7e61ee67f5ba559ae635de47 242 Pfam PF00912 Transglycosylase 67 230 1.5E-49 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Thimo_3690 87477a9039eeedfab88ed91eedf9561f 192 Pfam PF02342 TerD domain 1 183 5.4E-50 T 14-10-2018 IPR003325 TerD domain Thimo_3690 87477a9039eeedfab88ed91eedf9561f 192 Gene3D G3DSA:2.60.60.30 19 183 3.8E-47 T 14-10-2018 Thimo_1943 1bcf9c385c9b4cbdf25b025295196292 293 Pfam PF02517 CAAX protease self-immunity 120 237 6.3E-12 T 14-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 Thimo_3476 e2f8cc66612b7bd1e6577f7cb11bc6c6 119 Pfam PF09722 Protein of unknown function (DUF2384) 69 117 1.7E-11 T 14-10-2018 IPR024467 Domain of unknown function DUF2384 Thimo_0657 29cd54c3723467ab122dca756014bc9b 405 Pfam PF03239 Iron permease FTR1 family 61 253 1.6E-19 T 14-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 Thimo_0302 216f737f8cbed14a770758c6d13d29d3 71 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 7 50 4.2E-16 T 14-10-2018 IPR019239 Bacterial antitoxin of type II TA system, VapB Thimo_3103 007da7ebff063df46dac72177962d945 176 Pfam PF05258 Protein of unknown function (DUF721) 24 93 1.8E-12 T 14-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 Thimo_3147 fd821b76a36ca2cd6b485a37b1a957f1 96 Pfam PF01381 Helix-turn-helix 37 90 1.5E-10 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3147 fd821b76a36ca2cd6b485a37b1a957f1 96 Gene3D G3DSA:1.10.260.40 15 96 9.0E-14 T 14-10-2018 Thimo_3147 fd821b76a36ca2cd6b485a37b1a957f1 96 SMART SM00530 34 93 2.6E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Thimo_3147 fd821b76a36ca2cd6b485a37b1a957f1 96 SUPERFAMILY SSF47413 27 92 7.04E-12 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Thimo_3159 c8bdaed9d035834e8fbbaa7d959a428d 411 Pfam PF14238 Domain of unknown function (DUF4340) 84 263 6.7E-26 T 14-10-2018 IPR025641 Domain of unknown function DUF4340 Thimo_3293 69edde2870bbceb660b15551a6b489e2 60 SUPERFAMILY SSF52172 3 36 2.56E-5 T 14-10-2018 IPR011006 CheY-like superfamily Thimo_0878 359d2034e992574652f09e916e4c0c5a 161 SUPERFAMILY SSF50199 31 150 3.4E-11 T 14-10-2018 Thimo_0878 359d2034e992574652f09e916e4c0c5a 161 Gene3D G3DSA:2.40.50.90 29 157 4.1E-8 T 14-10-2018 IPR035437 SNase-like, OB-fold superfamily Thimo_0366 6bd67bc4132e0530de8fcf02c1f93dd3 202 PIRSF PIRSF006324 1 201 3.8E-47 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Thimo_0366 6bd67bc4132e0530de8fcf02c1f93dd3 202 Pfam PF01810 LysE type translocator 16 197 2.4E-27 T 14-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Thimo_0632 1fde015fef55948309dcbdf03982c79e 194 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 40 173 9.3E-24 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Thimo_2321 314915152ec640f41d3d018a227179bf 354 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 352 2.1E-61 T 14-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Thimo_2321 314915152ec640f41d3d018a227179bf 354 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 3 353 1.8E-113 T 14-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 Thimo_0252 d348525fb93827dec4f7d9f88e440245 190 SUPERFAMILY SSF53323 1 177 1.83E-40 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Thimo_0252 d348525fb93827dec4f7d9f88e440245 190 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 11 173 4.8E-27 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Thimo_0252 d348525fb93827dec4f7d9f88e440245 190 Gene3D G3DSA:3.40.920.10 1 181 5.9E-51 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Thimo_1569 ba90453cb9e3b6fa6d2d4301709f09c0 138 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 17 121 7.0E-10 T 14-10-2018 IPR020358 Uncharacterised protein family Y4oB Thimo_1569 ba90453cb9e3b6fa6d2d4301709f09c0 138 Pfam PF09722 Protein of unknown function (DUF2384) 75 121 2.1E-4 T 14-10-2018 IPR024467 Domain of unknown function DUF2384 Thimo_3077 236b9468a2a17b74f5181266666080c4 432 Pfam PF04230 Polysaccharide pyruvyl transferase 22 356 1.3E-31 T 14-10-2018 IPR007345 Polysaccharide pyruvyl transferase Thimo_1008 2b0008696d7720e97a1ffaef96b0c1e2 1101 Gene3D G3DSA:1.50.10.100 297 589 3.8E-26 T 14-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Thimo_3525 3a136bb72c5a588120370150ebe105ab 186 Pfam PF05685 Putative restriction endonuclease 16 170 1.1E-33 T 14-10-2018 IPR008538 Domain of unknown function DUF820 Thimo_3525 3a136bb72c5a588120370150ebe105ab 186 Gene3D G3DSA:3.90.1570.10 17 182 4.3E-14 T 14-10-2018 Thimo_3525 3a136bb72c5a588120370150ebe105ab 186 SUPERFAMILY SSF52980 10 160 2.57E-22 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_1791 9d9a7eb96cba051be3793a5f757f6985 117 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 6 105 2.2E-24 T 14-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Thimo_0758 47d77cd0ea417b18cd79e02ff3f72bfd 321 Pfam PF13557 Putative MetA-pathway of phenol degradation 79 316 5.0E-59 T 14-10-2018 IPR025737 MetA-pathway of phenol degradation, putative Thimo_3253 ad5c0135f5553514898181a6d2e76b63 190 Pfam PF04891 NifQ 30 187 1.1E-59 T 14-10-2018 IPR006975 NifQ GO:0009399|GO:0030151 Thimo_1778 fb82d0df560152b657ed7354c0f24beb 425 Pfam PF15611 EH_Signature domain 138 414 9.0E-41 T 14-10-2018 IPR028943 EH signature domain Thimo_3691 7f4caf2279182bf0cb3317fc98e541e5 149 SUPERFAMILY SSF158682 15 148 1.16E-24 T 14-10-2018 IPR029024 TerB-like Thimo_3691 7f4caf2279182bf0cb3317fc98e541e5 149 Gene3D G3DSA:1.10.3680.10 1 149 5.7E-47 T 14-10-2018 IPR029024 TerB-like Thimo_3691 7f4caf2279182bf0cb3317fc98e541e5 149 Pfam PF05099 Tellurite resistance protein TerB 11 147 9.9E-26 T 14-10-2018 IPR007791 Co-chaperone DjlA, N-terminal Thimo_0611 a621f5b541cf4ead061a24c08c157087 187 Pfam PF05685 Putative restriction endonuclease 11 175 6.4E-15 T 14-10-2018 IPR008538 Domain of unknown function DUF820 Thimo_0611 a621f5b541cf4ead061a24c08c157087 187 SUPERFAMILY SSF52980 5 178 1.34E-24 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Thimo_0611 a621f5b541cf4ead061a24c08c157087 187 Gene3D G3DSA:3.90.1570.10 2 179 1.2E-25 T 14-10-2018 Thimo_1069 6765ba8d917f246b04709f6d87b6ff97 125 Pfam PF04241 Protein of unknown function (DUF423) 19 106 1.4E-25 T 14-10-2018 IPR006696 Protein of unknown function DUF423 Thimo_0659 f4ad2617da1fa45a36e5a931b8f511eb 305 Pfam PF01882 Protein of unknown function DUF58 196 271 9.8E-13 T 14-10-2018 IPR002881 Domain of unknown function DUF58 Thimo_1489 f0b726994337211f04a95915a3b17a40 118 Gene3D G3DSA:3.40.50.10580 13 106 2.3E-5 T 14-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1489 f0b726994337211f04a95915a3b17a40 118 SUPERFAMILY SSF159468 14 101 1.1E-9 T 14-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_0345 77a7d3f7622c768a890173ef2d3c97d2 59 Pfam PF13396 Phospholipase_D-nuclease N-terminal 15 56 2.3E-11 T 14-10-2018 IPR027379 Cardiolipin synthase N-terminal Thimo_2206 4b70eb50e9b291725276bd2a6a722b03 145 SUPERFAMILY SSF81301 25 110 4.9E-5 T 14-10-2018 Thimo_2699 6f0aae92bd35cbec869413bdd014dfa1 513 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 370 499 6.1E-8 T 14-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Thimo_2699 6f0aae92bd35cbec869413bdd014dfa1 513 Pfam PF01943 Polysaccharide biosynthesis protein 28 305 1.6E-7 T 14-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Thimo_2025 cbfa8b17b49f29779cbf193087efa336 285 Pfam PF07705 CARDB 191 271 7.3E-6 T 14-10-2018 IPR011635 CARDB domain Thimo_2409 9bbacf448f58f2ab2755c81e2f8ca24c 300 Pfam PF00146 NADH dehydrogenase 11 296 1.7E-53 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Thimo_1491 f1a48fb88594a29b2a2d7237bfa7be52 646 Pfam PF01496 V-type ATPase 116kDa subunit family 284 386 1.1E-15 T 14-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_1491 f1a48fb88594a29b2a2d7237bfa7be52 646 Pfam PF01496 V-type ATPase 116kDa subunit family 525 623 3.7E-11 T 14-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Thimo_3637 b4c531acfae2e58e9b8d190654286c88 177 PIRSF PIRSF004982 1 177 3.8E-50 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 Thimo_3637 b4c531acfae2e58e9b8d190654286c88 177 Pfam PF03843 Outer membrane lipoprotein Slp family 16 166 4.7E-48 T 14-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 Thimo_2697 0c92d87dd22ea96234dd578ff70acf73 344 Pfam PF01882 Protein of unknown function DUF58 238 305 4.2E-15 T 14-10-2018 IPR002881 Domain of unknown function DUF58 Thimo_0820 6064b52e3304ee8237ecb34ea845e68a 293 Pfam PF04654 Protein of unknown function, DUF599 11 212 5.3E-62 T 14-10-2018 IPR006747 Protein of unknown function DUF599 Thimo_0999 c595886e3ea1995d8e23a33569c37c9d 250 SUPERFAMILY SSF52540 16 175 2.61E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_2238 ff6f3adcd2bfe65568f1518bac3d4bfc 265 Pfam PF09955 Predicted integral membrane protein (DUF2189) 70 194 1.2E-35 T 14-10-2018 IPR018692 Predicted integral membrane protein DUF2189 Thimo_2567 e7569121144221d9c77f2ccf2c3ebd4b 199 Pfam PF03729 Short repeat of unknown function (DUF308) 84 152 1.6E-10 T 14-10-2018 IPR005325 Protein of unknown function DUF308, membrane Thimo_2567 e7569121144221d9c77f2ccf2c3ebd4b 199 Pfam PF03729 Short repeat of unknown function (DUF308) 28 97 8.3E-10 T 14-10-2018 IPR005325 Protein of unknown function DUF308, membrane Thimo_0786 5b0c096012d1ac6f3ce8ae25331cb951 577 Pfam PF13699 Domain of unknown function (DUF4157) 86 163 5.4E-28 T 14-10-2018 IPR025295 Domain of unknown function DUF4157 Thimo_1224 6fca5b3472f3af665d97e33c0d24443e 105 Pfam PF02656 Domain of unknown function (DUF202) 34 98 4.6E-17 T 14-10-2018 IPR003807 Domain of unknown function DUF202 Thimo_3740 0d7bb5d429c6de96352ff57d349b03c3 80 SUPERFAMILY SSF47598 7 49 1.42E-6 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Thimo_2986 ad75a80cf6d4b6ca80df546c36b7110e 125 Gene3D G3DSA:2.60.120.10 15 124 4.5E-15 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Thimo_2986 ad75a80cf6d4b6ca80df546c36b7110e 125 SUPERFAMILY SSF51182 5 123 7.74E-18 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Thimo_2986 ad75a80cf6d4b6ca80df546c36b7110e 125 Pfam PF07883 Cupin domain 40 94 3.3E-7 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Thimo_0529 9cc37e2ff13a7418c9d2866cd0b3ac6d 408 SUPERFAMILY SSF52540 14 273 4.63E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Thimo_0529 9cc37e2ff13a7418c9d2866cd0b3ac6d 408 Gene3D G3DSA:3.40.50.300 6 207 2.0E-6 T 14-10-2018 Thimo_0410 cfa8e0f7e16bca7353a17a4d7f13971a 330 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 23 305 2.2E-19 T 14-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Thimo_0789 eb82e304d8449c8cd9fc83e006571a29 380 SUPERFAMILY SSF69279 66 198 1.25E-5 T 14-10-2018 Thimo_2691 3cb218cf8bebdf85ebd4bc1a3faca868 205 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 13 56 1.6E-6 T 14-10-2018 IPR025159 Transcriptional regulator, AbiEi antitoxin Thimo_0512 551f8d2e97d86b45aaeefdaa223b2a02 272 Pfam PF01578 Cytochrome C assembly protein 43 265 9.1E-34 T 14-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Thimo_1556 38c361c40da025d119d91d4ff9cf8c0e 125 Gene3D G3DSA:1.10.10.370 41 100 3.4E-9 T 14-10-2018 Thimo_1556 38c361c40da025d119d91d4ff9cf8c0e 125 SUPERFAMILY SSF69721 7 99 1.83E-21 T 14-10-2018 IPR025526 DsrC-like domain superfamily Thimo_1556 38c361c40da025d119d91d4ff9cf8c0e 125 Pfam PF04358 DsrC like protein 11 98 1.2E-13 T 14-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE Thimo_3779 1f5a495882306d0c4c0317246a6cf4df 165 Pfam PF11848 Domain of unknown function (DUF3368) 113 156 6.2E-11 T 14-10-2018 IPR021799 Protein of unknown function DUF3368 Thimo_2719 08fa65aaa43c305c5aee9390a7003955 770 Pfam PF14072 DNA-sulfur modification-associated 72 307 6.0E-10 T 14-10-2018 IPR017642 DNA sulphur modification protein DndB Thimo_0933 95dafa9940347efca73662c001d4c4f4 253 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 15 164 1.1E-14 T 14-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase Thimo_2388 86140096927c70faeaa227e29f188554 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 60 1.2E-20 T 14-10-2018 IPR019201 Protein of unknown function DUF2065 Thimo_2406 4595dbf871a8235e8b25f5628c2f0fed 125 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 15 119 1.4E-26 T 14-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Thimo_0451 fa2ad4312bbac0771d8ee73a1dc85413 168 Pfam PF07603 Protein of unknown function (DUF1566) 42 165 2.1E-30 T 14-10-2018 IPR011460 Protein of unknown function DUF1566 Thimo_1424 371b28ce3e1313416618edb0abd3ade0 148 SUPERFAMILY SSF46689 23 116 5.2E-5 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Thimo_3763 070aefac4a0b831c75f2e1dc6157f001 206 Pfam PF07424 TrbM 28 147 7.0E-15 T 14-10-2018 IPR009989 TrbM Thimo_2038 98ca227abd75eb6360fa6e0b684a7896 759 Pfam PF05170 AsmA family 9 196 6.6E-11 T 14-10-2018 IPR007844 AsmA Thimo_2038 98ca227abd75eb6360fa6e0b684a7896 759 Pfam PF05170 AsmA family 403 653 1.4E-27 T 14-10-2018 IPR007844 AsmA Thimo_0678 3c4cb7d049e197c159cb22a0497a600e 412 SUPERFAMILY SSF53098 113 284 4.4E-21 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Thimo_0678 3c4cb7d049e197c159cb22a0497a600e 412 Pfam PF13482 RNase_H superfamily 114 281 8.3E-30 T 14-10-2018 IPR038720 YprB, ribonuclease H-like domain Thimo_0031 613341460e78bb9b35c05fdcfaee544f 482 Pfam PF13440 Polysaccharide biosynthesis protein 42 335 4.5E-28 T 14-10-2018 Thimo_3257 06cd03954c3bf4e920b6ae99f23f9983 412 SUPERFAMILY SSF56935 69 412 8.7E-25 T 14-10-2018 Thimo_3257 06cd03954c3bf4e920b6ae99f23f9983 412 Gene3D G3DSA:2.40.160.10 154 407 1.0E-5 T 14-10-2018 IPR023614 Porin domain superfamily Thimo_1340 6011285264091ac814d1627b87e7b406 57 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 4 46 6.1E-6 T 14-10-2018 IPR008621 Cbb3-type cytochrome oxidase component Thimo_2483 9a3cfecfd6a92122b189f74baec146dc 52 Pfam PF11752 Protein of unknown function (DUF3309) 4 52 3.2E-23 T 14-10-2018 IPR021738 Protein of unknown function DUF3309 Thimo_1825 152156a29b772955fdbb9dfcdda2f74c 172 PIRSF PIRSF004923 1 155 7.5E-31 T 14-10-2018 IPR026268 Protein RseC Thimo_1825 152156a29b772955fdbb9dfcdda2f74c 172 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 146 1.1E-31 T 14-10-2018 Thimo_0929 fb4fee698af89bf19f01a96a50c2692b 254 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 21 215 3.2E-41 T 14-10-2018 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 Thimo_0929 fb4fee698af89bf19f01a96a50c2692b 254 Pfam PF02361 Cobalt transport protein 18 219 5.9E-27 T 14-10-2018 IPR003339 ABC/ECF transporter, transmembrane component Thimo_2746 ab888d713518c87637291d10cd12b090 31 TIGRFAM TIGR04560 ribo_THX: ribosomal small subunit protein bTHX 2 25 1.3E-7 T 14-10-2018 IPR030826 30S ribosomal protein GO:0005840 Thimo_3705 2ef308250f6d64a886fbc218bd5c9e7d 301 Pfam PF11740 Plasmid replication region DNA-binding N-term 7 118 5.7E-31 T 14-10-2018 IPR021104 KfrA, N-terminal DNA-binding domain Thimo_2706 ab3c0abf21053a32670db548ddb52e9f 577 Pfam PF03169 OPT oligopeptide transporter protein 6 295 1.3E-40 T 14-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 Thimo_2706 ab3c0abf21053a32670db548ddb52e9f 577 Pfam PF03169 OPT oligopeptide transporter protein 318 569 2.7E-41 T 14-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 Thimo_3350 0b0d785164b0c2547e600f4648dd1d88 51 Gene3D G3DSA:3.30.420.40 1 43 1.4E-8 T 14-10-2018 Thimo_0248 fbb7d0f74490c07152558aa5b33d73f7 292 Pfam PF02754 Cysteine-rich domain 148 237 3.5E-9 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_0248 fbb7d0f74490c07152558aa5b33d73f7 292 Pfam PF02754 Cysteine-rich domain 5 85 2.4E-9 T 14-10-2018 IPR004017 Cysteine-rich domain Thimo_0100 6a0229c2e3497cee25b20bd53f6d1f50 148 Pfam PF04380 Membrane fusogenic activity 60 134 1.9E-27 T 14-10-2018 IPR007475 Membrane fusogenic activity Thimo_0634 adea4e2ee7e0f665de34592fa0a91f81 437 Pfam PF02687 FtsX-like permease family 335 427 1.4E-6 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Thimo_2302 817c55fd45c998b19fad5b5cac9da90a 147 PIRSF PIRSF006173 1 147 1.0E-54 T 14-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 Thimo_0492 46546d6a6b73c177ea59b39354e782c9 310 Pfam PF02535 ZIP Zinc transporter 150 305 1.1E-24 T 14-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Thimo_1906 d3ecaef20c3d46b78ca1fed234983304 612 Pfam PF05787 Bacterial protein of unknown function (DUF839) 150 558 9.1E-27 T 14-10-2018 IPR008557 Protein of unknown function DUF839 Thimo_1116 430071b60df0e5f74b8674e8db51ddef 198 Pfam PF14316 Domain of unknown function (DUF4381) 12 171 1.6E-37 T 14-10-2018 IPR025489 Protein of unknown function (DUF4381 Thimo_3528 a03dba597374c720a7f12f7f09f3226c 247 Pfam PF13643 Domain of unknown function (DUF4145) 125 200 1.4E-15 T 14-10-2018 IPR025285 Domain of unknown function DUF4145 Thimo_1073 12815f6fcb744c1b092ca504fa3e166e 433 Pfam PF11902 Protein of unknown function (DUF3422) 7 426 9.6E-165 T 14-10-2018 IPR021830 Protein of unknown function DUF3422 Thimo_0170 a1fe80a75f850fb1e20bbb526f38a73f 297 Pfam PF14358 Domain of unknown function (DUF4405) 13 78 4.7E-15 T 14-10-2018 IPR025517 Domain of unknown function DUF4405 Thimo_2402 5ae23a1a930f1ccbc1fe7604438ac767 82 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 28 79 6.3E-16 T 14-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Thimo_1705 eef609a61956e3cc49b08156905466fc 481 Pfam PF13598 Domain of unknown function (DUF4139) 191 479 1.5E-9 T 14-10-2018 IPR037291 Domain of unknown function DUF4139 Thimo_3457 70ecc1c82493eb5b8219ad17ae5621c2 174 Pfam PF14367 Domain of unknown function (DUF4411) 7 168 1.3E-40 T 14-10-2018 IPR016541 Uncharacterised conserved protein UCP008505 Thimo_0875 ee9ea16c4583b722212772224ca43fbd 255 SUPERFAMILY SSF56784 4 207 7.93E-11 T 14-10-2018 IPR036412 HAD-like superfamily Thimo_3523 33515c47f60240d19d16bec3bda0407f 697 Pfam PF02690 Na+/Pi-cotransporter 215 306 1.5E-11 T 14-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Thimo_3523 33515c47f60240d19d16bec3bda0407f 697 Pfam PF02690 Na+/Pi-cotransporter 52 191 6.0E-36 T 14-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Thimo_3126 d40e930fac05ce19ec6d2f8d2eaa573b 339 Pfam PF01061 ABC-2 type transporter 138 305 8.1E-26 T 14-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Thimo_2120 14073f173fdeb4e8b5f45dc353cc324b 258 Pfam PF09955 Predicted integral membrane protein (DUF2189) 72 193 6.7E-27 T 14-10-2018 IPR018692 Predicted integral membrane protein DUF2189