TBH_C0001	SM00382	ATPases associated with a variety of cellular activities
TBH_C0001	SM00760	Bacterial dnaA protein helix-turn-helix domain
TBH_C0002	SM00480	DNA polymerase III beta subunit
TBH_C0004	SM00387	Histidine kinase-like ATPases
TBH_C0004	SM00433	TopoisomeraseII
TBH_C0005	SM00563	Phosphate acyltransferases
TBH_C0008	SM00836	DALR anticodon binding domain
TBH_C0010	SM00878	Biotin carboxylase C-terminal domain
TBH_C0017	SM00883	Chaperonin 10 Kd subunit
TBH_C0027	SM00244	prohibitin homologues
TBH_C0038	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
TBH_C0045	SM00487	DEAD-like helicases superfamily
TBH_C0045	SM00490	helicase superfamily c-terminal domain
TBH_C0047	SM00836	DALR anticodon binding domain
TBH_C0047	SM01016	Arginyl tRNA synthetase N terminal dom
TBH_C0049	SM00897	FIST N domain
TBH_C0049	SM01204	TBH_C0049
TBH_C0050	SM00052	Putative diguanylate phosphodiesterase
TBH_C0050	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TBH_C0050	SM00091	PAS domain
TBH_C0050	SM00267	diguanylate cyclase
TBH_C0057	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C0057	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C0069	SM00028	Tetratricopeptide repeats
TBH_C0071	SM00829	Enoylreductase
TBH_C0072	SM00986	Uracil DNA glycosylase superfamily
TBH_C0072	SM00987	UreE urease accessory protein, C-terminal domain 
TBH_C0073	SM00782	PhnA Zinc-Ribbon
TBH_C0075	SM01209	TBH_C0075
TBH_C0075	SM01210	TBH_C0075
TBH_C0076	SM00798	AICARFT/IMPCHase bienzyme
TBH_C0076	SM00851	MGS-like domain
TBH_C0091	SM00857	Resolvase, N terminal domain
TBH_C0098	SM00028	Tetratricopeptide repeats
TBH_C0098	SM00267	diguanylate cyclase
TBH_C0118	SM00382	ATPases associated with a variety of cellular activities
TBH_C0128	SM00852	Probable molybdopterin binding domain
TBH_C0129	SM00852	Probable molybdopterin binding domain
TBH_C0136	SM00267	diguanylate cyclase
TBH_C0139	SM01011	Aminopeptidase P, N-terminal domain
TBH_C0147	SM00028	Tetratricopeptide repeats
TBH_C0155	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C0158	SM00919	Malic enzyme, NAD binding domain
TBH_C0158	SM01274	TBH_C0158
TBH_C0162	SM00842	Cell division protein FtsA
TBH_C0166	SM00965	Secretin and TonB N terminus short domain
TBH_C0186	SM00316	Ribosomal protein S1-like RNA-binding domain
TBH_C0188	SM00062	Bacterial periplasmic substrate-binding proteins
TBH_C0190	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
TBH_C0190	SM00474	3'-5' exonuclease
TBH_C0190	SM00475	5'-3' exonuclease
TBH_C0190	SM00482	DNA polymerase A domain
TBH_C0194	SM00487	DEAD-like helicases superfamily
TBH_C0194	SM00490	helicase superfamily c-terminal domain
TBH_C0200	SM00341	Helicase and RNase D C-terminal
TBH_C0200	SM00474	3'-5' exonuclease
TBH_C0203	SM00448	cheY-homologous receiver domain
TBH_C0212	SM00327	von Willebrand factor (vWF) type A domain
TBH_C0213	SM00382	ATPases associated with a variety of cellular activities
TBH_C0222	SM00470	ParB-like nuclease domain
TBH_C0230	SM00382	ATPases associated with a variety of cellular activities
TBH_C0245	SM00052	Putative diguanylate phosphodiesterase
TBH_C0245	SM00267	diguanylate cyclase
TBH_C0246	SM00487	DEAD-like helicases superfamily
TBH_C0246	SM00490	helicase superfamily c-terminal domain
TBH_C0248	SM00357	Cold shock protein domain
TBH_C0248	SM00382	ATPases associated with a variety of cellular activities
TBH_C0248	SM00959	Rho termination factor, N-terminal domain
TBH_C0254	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C0258	SM00936	Penicillin-binding protein 5, C-terminal domain 
TBH_C0268	SM00845	GatB domain
TBH_C0271	SM00014	Acid phosphatase homologues
TBH_C0275	SM00937	TBH_C0275
TBH_C0283	SM01400	TBH_C0283
TBH_C0285	SM00028	Tetratricopeptide repeats
TBH_C0288	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
TBH_C0288	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
TBH_C0289	SM00649	Ribosomal protein L11/L12
TBH_C0294	SM00663	RNA polymerase I subunit A N-terminus
TBH_C0297	SM00838	Elongation factor G C-terminus
TBH_C0297	SM00889	Elongation factor G, domain IV
TBH_C0299	SM01403	TBH_C0299
TBH_C0303	SM01382	TBH_C0303
TBH_C0303	SM01383	TBH_C0303
TBH_C0306	SM00322	K homology RNA-binding domain
TBH_C0310	SM01374	TBH_C0310
TBH_C0311	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
TBH_C0324	SM00363	S4 RNA-binding domain
TBH_C0324	SM01390	TBH_C0324
TBH_C0325	SM00662	RNA polymerases D
TBH_C0329	SM00387	Histidine kinase-like ATPases
TBH_C0329	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C0330	SM00382	ATPases associated with a variety of cellular activities
TBH_C0330	SM00448	cheY-homologous receiver domain
TBH_C0332	SM00849	Metallo-beta-lactamase superfamily
TBH_C0338	SM00450	Rhodanese Homology Domain
TBH_C0339	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TBH_C0342	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C0342	SM00245	tail specific protease
TBH_C0350	SM00387	Histidine kinase-like ATPases
TBH_C0351	SM00421	helix_turn_helix, Lux Regulon
TBH_C0351	SM00448	cheY-homologous receiver domain
TBH_C0353	SM00382	ATPases associated with a variety of cellular activities
TBH_C0353	SM01086	C-terminal, D2-small domain, of ClpB protein
TBH_C0373	SM01234	TBH_C0373
TBH_C0375	SM00382	ATPases associated with a variety of cellular activities
TBH_C0383	SM01350	TBH_C0383
TBH_C0391	SM00487	DEAD-like helicases superfamily
TBH_C0391	SM00490	helicase superfamily c-terminal domain
TBH_C0403	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
TBH_C0403	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
TBH_C0403	SM00493	TBH_C0403
TBH_C0411	SM00091	PAS domain
TBH_C0411	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C0411	SM00387	Histidine kinase-like ATPases
TBH_C0411	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C0412	SM00382	ATPases associated with a variety of cellular activities
TBH_C0412	SM00448	cheY-homologous receiver domain
TBH_C0418	SM00382	ATPases associated with a variety of cellular activities
TBH_C0418	SM00448	cheY-homologous receiver domain
TBH_C0425	SM00267	diguanylate cyclase
TBH_C0425	SM00448	cheY-homologous receiver domain
TBH_C0426	SM00924	MgtE intracellular N domain
TBH_C0427	SM00671	Sel1-like repeats.
TBH_C0435	SM00382	ATPases associated with a variety of cellular activities
TBH_C0439	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C0441	SM00382	ATPases associated with a variety of cellular activities
TBH_C0452	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C0461	SM00506	Appr-1"-p processing enzyme
TBH_C0464	SM00382	ATPases associated with a variety of cellular activities
TBH_C0490	SM00382	ATPases associated with a variety of cellular activities
TBH_C0510	SM00248	ankyrin repeats
TBH_C0519	SM00382	ATPases associated with a variety of cellular activities
TBH_C0527	SM00028	Tetratricopeptide repeats
TBH_C0528	SM00530	Helix-turn-helix XRE-family like proteins 
TBH_C0537	SM00563	Phosphate acyltransferases
TBH_C0539	SM00861	Transketolase, pyrimidine binding domain
TBH_C0563	SM00842	Cell division protein FtsA
TBH_C0564	SM00864	Tubulin/FtsZ family, GTPase domain
TBH_C0564	SM00865	Tubulin/FtsZ family, C-terminal domain
TBH_C0568	SM00957	SecA DEAD-like domain
TBH_C0568	SM00958	SecA preprotein cross-linking domain
TBH_C0586	SM00028	Tetratricopeptide repeats
TBH_C0592	SM00710	Parallel beta-helix repeats
TBH_C0608	SM00487	DEAD-like helicases superfamily
TBH_C0608	SM00490	helicase superfamily c-terminal domain
TBH_C0612	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C0614	SM00052	Putative diguanylate phosphodiesterase
TBH_C0614	SM00091	PAS domain
TBH_C0614	SM00267	diguanylate cyclase
TBH_C0618	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
TBH_C0624	SM00710	Parallel beta-helix repeats
TBH_C0627	SM00382	ATPases associated with a variety of cellular activities
TBH_C0637	SM00271	DnaJ molecular chaperone homology domain
TBH_C0650	SM00052	Putative diguanylate phosphodiesterase
TBH_C0650	SM00091	PAS domain
TBH_C0650	SM00267	diguanylate cyclase
TBH_C0654	SM00841	Elongation factor P, C-terminal
TBH_C0654	SM01185	TBH_C0654
TBH_C0661	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TBH_C0661	SM00481	DNA polymerase alpha chain like domain
TBH_C0661	SM00483	DNA polymerase X family
TBH_C0666	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C0666	SM01240	TBH_C0666
TBH_C0672	SM00287	Bacterial SH3 domain homologues
TBH_C0675	SM00710	Parallel beta-helix repeats
TBH_C0683	SM00448	cheY-homologous receiver domain
TBH_C0683	SM00862	Transcriptional regulatory protein, C terminal
TBH_C0684	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C0684	SM00387	Histidine kinase-like ATPases
TBH_C0684	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C0690	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C0690	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C0691	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
TBH_C0695	SM00855	Phosphoglycerate mutase family
TBH_C0701	SM00862	Transcriptional regulatory protein, C terminal
TBH_C0706	SM00342	helix_turn_helix, arabinose operon control protein
TBH_C0707	SM00220	Serine/Threonine protein kinases, catalytic domain
TBH_C0720	SM00382	ATPases associated with a variety of cellular activities
TBH_C0720	SM00994	ClpX C4-type zinc finger
TBH_C0720	SM01086	C-terminal, D2-small domain, of ClpB protein
TBH_C0721	SM00382	ATPases associated with a variety of cellular activities
TBH_C0721	SM00464	Found in ATP-dependent protease La (LON)
TBH_C0722	SM00411	bacterial (prokaryotic) histone like domain
TBH_C0730	SM00271	DnaJ molecular chaperone homology domain
TBH_C0734	SM00984	UDP binding domain
TBH_C0736	SM00382	ATPases associated with a variety of cellular activities
TBH_C0742	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C0768	SM00382	ATPases associated with a variety of cellular activities
TBH_C0769	SM00382	ATPases associated with a variety of cellular activities
TBH_C0774	SM00257	Lysin motif
TBH_C0777	SM00479	TBH_C0777
TBH_C0781	SM00052	Putative diguanylate phosphodiesterase
TBH_C0781	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TBH_C0781	SM00091	PAS domain
TBH_C0781	SM00267	diguanylate cyclase
TBH_C0791	SM00481	DNA polymerase alpha chain like domain
TBH_C0797	SM00382	ATPases associated with a variety of cellular activities
TBH_C0804	SM00890	Domain of unknown function
TBH_C0813	SM01321	TBH_C0813
TBH_C0826	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C0830	SM00342	helix_turn_helix, arabinose operon control protein
TBH_C0830	SM00387	Histidine kinase-like ATPases
TBH_C0830	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C0830	SM00448	cheY-homologous receiver domain
TBH_C0839	SM01007	Class II Aldolase and Adducin N-terminal domain
TBH_C0848	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TBH_C0848	SM00292	breast cancer carboxy-terminal domain
TBH_C0848	SM00532	Ligase N family
TBH_C0869	SM00382	ATPases associated with a variety of cellular activities
TBH_C0870	SM00421	helix_turn_helix, Lux Regulon
TBH_C0870	SM00448	cheY-homologous receiver domain
TBH_C0871	SM00986	Uracil DNA glycosylase superfamily
TBH_C0871	SM00987	UreE urease accessory protein, C-terminal domain 
TBH_C0873	SM00465	GIY-YIG type nucleases (URI domain)
TBH_C0877	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TBH_C0878	SM00382	ATPases associated with a variety of cellular activities
TBH_C0882	SM00382	ATPases associated with a variety of cellular activities
TBH_C0890	SM00900	TBH_C0890
TBH_C0898	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
TBH_C0904	SM00829	Enoylreductase
TBH_C0926	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TBH_C0926	SM00895	TBH_C0926
TBH_C0929	SM00859	Semialdehyde dehydrogenase, NAD binding domain
TBH_C0936	SM00382	ATPases associated with a variety of cellular activities
TBH_C0936	SM00989	TBH_C0936
TBH_C0944	SM00530	Helix-turn-helix XRE-family like proteins 
TBH_C0945	SM00530	Helix-turn-helix XRE-family like proteins 
TBH_C0948	SM00990	TBH_C0948
TBH_C0953	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
TBH_C0955	SM00318	Staphylococcal nuclease homologues
TBH_C0960	SM01252	TBH_C0960
TBH_C0979	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
TBH_C0986	SM00671	Sel1-like repeats.
TBH_C0988	SM00382	ATPases associated with a variety of cellular activities
TBH_C0989	SM00382	ATPases associated with a variety of cellular activities
TBH_C0993	SM00481	DNA polymerase alpha chain like domain
TBH_C0999	SM00363	S4 RNA-binding domain
TBH_C1013	SM00382	ATPases associated with a variety of cellular activities
TBH_C1025	SM00881	CoA binding domain
TBH_C1030	SM00904	Riboflavin kinase
TBH_C1034	SM00644	TBH_C1034
TBH_C1040	SM00028	Tetratricopeptide repeats
TBH_C1041	SM00363	S4 RNA-binding domain
TBH_C1043	SM00267	diguanylate cyclase
TBH_C1047	SM00382	ATPases associated with a variety of cellular activities
TBH_C1047	SM01086	C-terminal, D2-small domain, of ClpB protein
TBH_C1049	SM00448	cheY-homologous receiver domain
TBH_C1049	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C1051	SM00387	Histidine kinase-like ATPases
TBH_C1051	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1051	SM00448	cheY-homologous receiver domain
TBH_C1056	SM00357	Cold shock protein domain
TBH_C1060	SM00479	TBH_C1060
TBH_C1061	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C1065	SM00382	ATPases associated with a variety of cellular activities
TBH_C1065	SM00448	cheY-homologous receiver domain
TBH_C1066	SM00091	PAS domain
TBH_C1066	SM00387	Histidine kinase-like ATPases
TBH_C1066	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1076	SM00342	helix_turn_helix, arabinose operon control protein
TBH_C1086	SM00271	DnaJ molecular chaperone homology domain
TBH_C1093	SM00954	Region found in RelA / SpoT proteins
TBH_C1096	SM00382	ATPases associated with a variety of cellular activities
TBH_C1116	SM00825	Beta-ketoacyl synthase
TBH_C1119	SM00822	TBH_C1119
TBH_C1125	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C1126	SM00838	Elongation factor G C-terminus
TBH_C1129	SM00358	Double-stranded RNA binding motif
TBH_C1129	SM00535	Ribonuclease III family
TBH_C1133	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C1133	SM00387	Histidine kinase-like ATPases
TBH_C1133	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1133	SM00448	cheY-homologous receiver domain
TBH_C1136	SM01118	TBH_C1136
TBH_C1141	SM00028	Tetratricopeptide repeats
TBH_C1141	SM00220	Serine/Threonine protein kinases, catalytic domain
TBH_C1143	SM00612	TBH_C1143
TBH_C1149	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C1158	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C1160	SM00935	Outer membrane protein (OmpH-like)
TBH_C1166	SM00481	DNA polymerase alpha chain like domain
TBH_C1168	SM00977	TilS substrate C-terminal domain
TBH_C1172	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C1172	SM00387	Histidine kinase-like ATPases
TBH_C1172	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1172	SM00448	cheY-homologous receiver domain
TBH_C1175	SM00052	Putative diguanylate phosphodiesterase
TBH_C1175	SM00073	Histidine Phosphotransfer domain
TBH_C1175	SM00267	diguanylate cyclase
TBH_C1175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C1175	SM00387	Histidine kinase-like ATPases
TBH_C1175	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1175	SM00448	cheY-homologous receiver domain
TBH_C1182	SM00955	TBH_C1182
TBH_C1188	SM00849	Metallo-beta-lactamase superfamily
TBH_C1190	SM00267	diguanylate cyclase
TBH_C1193	SM00968	SMC proteins Flexible Hinge Domain
TBH_C1199	SM00387	Histidine kinase-like ATPases
TBH_C1199	SM00433	TopoisomeraseII
TBH_C1202	SM00434	DNA Topoisomerase IV
TBH_C1203	SM01323	TBH_C1203
TBH_C1206	SM00028	Tetratricopeptide repeats
TBH_C1207	SM00327	von Willebrand factor (vWF) type A domain
TBH_C1208	SM00327	von Willebrand factor (vWF) type A domain
TBH_C1219	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
TBH_C1220	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
TBH_C1228	SM00248	ankyrin repeats
TBH_C1231	SM00448	cheY-homologous receiver domain
TBH_C1231	SM00862	Transcriptional regulatory protein, C terminal
TBH_C1232	SM00387	Histidine kinase-like ATPases
TBH_C1239	SM00382	ATPases associated with a variety of cellular activities
TBH_C1247	SM00563	Phosphate acyltransferases
TBH_C1251	SM00327	von Willebrand factor (vWF) type A domain
TBH_C1251	SM00609	Vault protein Inter-alpha-Trypsin domain
TBH_C1256	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C1257	SM00382	ATPases associated with a variety of cellular activities
TBH_C1266	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C1268	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C1269	SM00271	DnaJ molecular chaperone homology domain
TBH_C1285	SM01329	TBH_C1285
TBH_C1286	SM00859	Semialdehyde dehydrogenase, NAD binding domain
TBH_C1302	SM00382	ATPases associated with a variety of cellular activities
TBH_C1302	SM00843	TBH_C1302
TBH_C1304	SM00382	ATPases associated with a variety of cellular activities
TBH_C1311	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TBH_C1316	SM00873	B3/4 domain
TBH_C1316	SM00874	tRNA synthetase B5 domain
TBH_C1316	SM00896	Ferredoxin-fold anticodon binding domain
TBH_C1317	SM00411	bacterial (prokaryotic) histone like domain
TBH_C1318	SM00422	helix_turn_helix, mercury resistance
TBH_C1323	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TBH_C1323	SM00450	Rhodanese Homology Domain
TBH_C1334	SM00840	TBH_C1334
TBH_C1336	SM01400	TBH_C1336
TBH_C1337	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
TBH_C1340	SM00382	ATPases associated with a variety of cellular activities
TBH_C1354	SM00382	ATPases associated with a variety of cellular activities
TBH_C1358	SM00267	diguanylate cyclase
TBH_C1361	SM00858	TBH_C1361
TBH_C1370	SM00047	Lysozyme subfamily 2
TBH_C1380	SM00091	PAS domain
TBH_C1380	SM00387	Histidine kinase-like ATPases
TBH_C1380	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1381	SM00382	ATPases associated with a variety of cellular activities
TBH_C1381	SM00448	cheY-homologous receiver domain
TBH_C1386	SM00382	ATPases associated with a variety of cellular activities
TBH_C1388	SM00052	Putative diguanylate phosphodiesterase
TBH_C1388	SM00267	diguanylate cyclase
TBH_C1388	SM00448	cheY-homologous receiver domain
TBH_C1399	SM00382	ATPases associated with a variety of cellular activities
TBH_C1399	SM00962	SRP54-type protein, GTPase domain
TBH_C1411	SM00382	ATPases associated with a variety of cellular activities
TBH_C1411	SM00487	DEAD-like helicases superfamily
TBH_C1411	SM00490	helicase superfamily c-terminal domain
TBH_C1411	SM00847	Helicase associated domain (HA2)  Add an annotation
TBH_C1413	SM00530	Helix-turn-helix XRE-family like proteins 
TBH_C1421	SM00387	Histidine kinase-like ATPases
TBH_C1423	SM00235	Zinc-dependent metalloprotease
TBH_C1432	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
TBH_C1433	SM00822	TBH_C1433
TBH_C1434	SM00823	Phosphopantetheine attachment site
TBH_C1435	SM00825	Beta-ketoacyl synthase
TBH_C1450	SM00382	ATPases associated with a variety of cellular activities
TBH_C1450	SM00448	cheY-homologous receiver domain
TBH_C1451	SM00387	Histidine kinase-like ATPases
TBH_C1451	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1459	SM00746	metallochaperone-like domain
TBH_C1469	SM00421	helix_turn_helix, Lux Regulon
TBH_C1471	SM00530	Helix-turn-helix XRE-family like proteins 
TBH_C1473	SM00267	diguanylate cyclase
TBH_C1473	SM00448	cheY-homologous receiver domain
TBH_C1475	SM00073	Histidine Phosphotransfer domain
TBH_C1475	SM00260	Two component signalling adaptor domain
TBH_C1475	SM00387	Histidine kinase-like ATPases
TBH_C1475	SM00448	cheY-homologous receiver domain
TBH_C1477	SM00138	Methyltransferase, chemotaxis proteins 
TBH_C1478	SM00260	Two component signalling adaptor domain
TBH_C1479	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TBH_C1479	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C1482	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
TBH_C1485	SM00487	DEAD-like helicases superfamily
TBH_C1485	SM00490	helicase superfamily c-terminal domain
TBH_C1490	SM00098	Alkaline phosphatase homologues
TBH_C1500	SM00530	Helix-turn-helix XRE-family like proteins 
TBH_C1502	SM01101	TBH_C1502
TBH_C1507	SM00487	DEAD-like helicases superfamily
TBH_C1508	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
TBH_C1512	SM00271	DnaJ molecular chaperone homology domain
TBH_C1520	SM00479	TBH_C1520
TBH_C1528	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
TBH_C1528	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
TBH_C1533	SM00448	cheY-homologous receiver domain
TBH_C1533	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C1534	SM00062	Bacterial periplasmic substrate-binding proteins
TBH_C1534	SM00387	Histidine kinase-like ATPases
TBH_C1534	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1534	SM00448	cheY-homologous receiver domain
TBH_C1535	SM00316	Ribosomal protein S1-like RNA-binding domain
TBH_C1535	SM00322	K homology RNA-binding domain
TBH_C1536	SM01387	TBH_C1536
TBH_C1540	SM00316	Ribosomal protein S1-like RNA-binding domain
TBH_C1550	SM00363	S4 RNA-binding domain
TBH_C1552	SM00226	Low molecular weight phosphatase family
TBH_C1559	SM00382	ATPases associated with a variety of cellular activities
TBH_C1559	SM00448	cheY-homologous receiver domain
TBH_C1560	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C1560	SM00387	Histidine kinase-like ATPases
TBH_C1560	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1574	SM00849	Metallo-beta-lactamase superfamily
TBH_C1576	SM00382	ATPases associated with a variety of cellular activities
TBH_C1583	SM00028	Tetratricopeptide repeats
TBH_C1583	SM00267	diguanylate cyclase
TBH_C1588	SM00487	DEAD-like helicases superfamily
TBH_C1588	SM00490	helicase superfamily c-terminal domain
TBH_C1588	SM00982	TBH_C1588
TBH_C1588	SM01058	CarD-like/TRCF domain
TBH_C1594	SM00448	cheY-homologous receiver domain
TBH_C1594	SM00862	Transcriptional regulatory protein, C terminal
TBH_C1595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C1595	SM00387	Histidine kinase-like ATPases
TBH_C1595	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1602	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C1603	SM00382	ATPases associated with a variety of cellular activities
TBH_C1603	SM00962	SRP54-type protein, GTPase domain
TBH_C1603	SM00963	SRP54-type protein, helical bundle domain
TBH_C1609	SM00861	Transketolase, pyrimidine binding domain
TBH_C1621	SM00422	helix_turn_helix, mercury resistance
TBH_C1636	SM00493	TBH_C1636
TBH_C1638	SM00382	ATPases associated with a variety of cellular activities
TBH_C1639	SM00267	diguanylate cyclase
TBH_C1642	SM00878	Biotin carboxylase C-terminal domain
TBH_C1646	SM01001	AIR carboxylase
TBH_C1649	SM00327	von Willebrand factor (vWF) type A domain
TBH_C1657	SM01192	TBH_C1657
TBH_C1657	SM01193	TBH_C1657
TBH_C1661	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C1661	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C1662	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C1662	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C1671	SM00341	Helicase and RNase D C-terminal
TBH_C1671	SM00487	DEAD-like helicases superfamily
TBH_C1671	SM00490	helicase superfamily c-terminal domain
TBH_C1671	SM00956	TBH_C1671
TBH_C1677	SM00382	ATPases associated with a variety of cellular activities
TBH_C1683	SM00357	Cold shock protein domain
TBH_C1684	SM01329	TBH_C1684
TBH_C1693	SM00938	Nitrogen regulatory protein P-II
TBH_C1694	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C1697	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C1697	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C1698	SM00612	TBH_C1698
TBH_C1699	SM00316	Ribosomal protein S1-like RNA-binding domain
TBH_C1699	SM00732	Likely ribonuclease with RNase H fold.
TBH_C1700	SM00155	Phospholipase D. Active site motifs.
TBH_C1701	SM00155	Phospholipase D. Active site motifs.
TBH_C1707	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
TBH_C1707	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
TBH_C1708	SM00448	cheY-homologous receiver domain
TBH_C1708	SM00862	Transcriptional regulatory protein, C terminal
TBH_C1709	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C1709	SM00387	Histidine kinase-like ATPases
TBH_C1709	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C1712	SM00382	ATPases associated with a variety of cellular activities
TBH_C1714	SM01103	TBH_C1714
TBH_C1718	SM00851	MGS-like domain
TBH_C1718	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
TBH_C1719	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
TBH_C1721	SM00028	Tetratricopeptide repeats
TBH_C1736	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C1739	SM00731	SprT homologues.
TBH_C1751	SM00316	Ribosomal protein S1-like RNA-binding domain
TBH_C1752	SM00382	ATPases associated with a variety of cellular activities
TBH_C1752	SM01086	C-terminal, D2-small domain, of ClpB protein
TBH_C1754	SM01211	TBH_C1754
TBH_C1761	SM00855	Phosphoglycerate mutase family
TBH_C1762	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C1762	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C1763	SM00155	Phospholipase D. Active site motifs.
TBH_C1769	SM00861	Transketolase, pyrimidine binding domain
TBH_C1777	SM00831	Cation transporter/ATPase, N-terminus
TBH_C1779	SM00849	Metallo-beta-lactamase superfamily
TBH_C1779	SM01027	Beta-Casp domain
TBH_C1799	SM01091	Transporter associated domain
TBH_C1800	SM00448	cheY-homologous receiver domain
TBH_C1805	SM00382	ATPases associated with a variety of cellular activities
TBH_C1806	SM01005	Alanine racemase, C-terminal domain
TBH_C1807	SM00382	ATPases associated with a variety of cellular activities
TBH_C1812	SM00967	RNA 2'-O ribose methyltransferase substrate binding
TBH_C1813	SM00316	Ribosomal protein S1-like RNA-binding domain
TBH_C1813	SM00357	Cold shock protein domain
TBH_C1813	SM00955	TBH_C1813
TBH_C1814	SM00506	Appr-1"-p processing enzyme
TBH_C1822	SM00986	Uracil DNA glycosylase superfamily
TBH_C1822	SM00987	UreE urease accessory protein, C-terminal domain 
TBH_C1823	SM00917	LeuA allosteric (dimerisation) domain
TBH_C1824	SM00052	Putative diguanylate phosphodiesterase
TBH_C1824	SM00091	PAS domain
TBH_C1824	SM00267	diguanylate cyclase
TBH_C1826	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C1834	SM00448	cheY-homologous receiver domain
TBH_C1834	SM00862	Transcriptional regulatory protein, C terminal
TBH_C1838	SM00563	Phosphate acyltransferases
TBH_C1849	SM00248	ankyrin repeats
TBH_C1852	SM00479	TBH_C1852
TBH_C1866	SM00028	Tetratricopeptide repeats
TBH_C1866	SM00267	diguanylate cyclase
TBH_C1869	SM00028	Tetratricopeptide repeats
TBH_C1869	SM00327	von Willebrand factor (vWF) type A domain
TBH_C1870	SM00327	von Willebrand factor (vWF) type A domain
TBH_C1874	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C1879	SM00852	Probable molybdopterin binding domain
TBH_C1886	SM00257	Lysin motif
TBH_C1890	SM00463	Small MutS-related domain
TBH_C1895	SM00564	beta-propeller repeat
TBH_C1899	SM00028	Tetratricopeptide repeats
TBH_C1900	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C1902	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C1911	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C1921	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
TBH_C1932	SM00905	Dihydroneopterin aldolase
TBH_C1936	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TBH_C1938	SM00382	ATPases associated with a variety of cellular activities
TBH_C1942	SM00612	TBH_C1942
TBH_C1943	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
TBH_C1943	SM00534	ATPase domain of DNA mismatch repair MUTS family
TBH_C1945	SM00331	Sigma factor PP2C-like phosphatases
TBH_C1945	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
TBH_C1951	SM01322	TBH_C1951
TBH_C1954	SM00450	Rhodanese Homology Domain
TBH_C1961	SM00900	TBH_C1961
TBH_C1963	SM00478	endonuclease III
TBH_C1963	SM00525	TBH_C1963
TBH_C1967	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C1973	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TBH_C1974	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
TBH_C1982	SM00422	helix_turn_helix, mercury resistance
TBH_C1988	SM00382	ATPases associated with a variety of cellular activities
TBH_C1995	SM00450	Rhodanese Homology Domain
TBH_C1997	SM00450	Rhodanese Homology Domain
TBH_C2011	SM00849	Metallo-beta-lactamase superfamily
TBH_C2020	SM00450	Rhodanese Homology Domain
TBH_C2022	SM00028	Tetratricopeptide repeats
TBH_C2022	SM00327	von Willebrand factor (vWF) type A domain
TBH_C2023	SM00327	von Willebrand factor (vWF) type A domain
TBH_C2033	SM00028	Tetratricopeptide repeats
TBH_C2033	SM00220	Serine/Threonine protein kinases, catalytic domain
TBH_C2036	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C2036	SM00954	Region found in RelA / SpoT proteins
TBH_C2037	SM01409	TBH_C2037
TBH_C2044	SM00382	ATPases associated with a variety of cellular activities
TBH_C2044	SM00962	SRP54-type protein, GTPase domain
TBH_C2044	SM00963	SRP54-type protein, helical bundle domain
TBH_C2045	SM00382	ATPases associated with a variety of cellular activities
TBH_C2052	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C2052	SM00876	Biotin and Thiamin Synthesis associated domain
TBH_C2059	SM00905	Dihydroneopterin aldolase
TBH_C2060	SM01207	TBH_C2060
TBH_C2064	SM00400	zinc finger
TBH_C2064	SM00493	TBH_C2064
TBH_C2064	SM00766	DNA primase DnaG DnaB-binding
TBH_C2076	SM00530	Helix-turn-helix XRE-family like proteins 
TBH_C2084	SM00487	DEAD-like helicases superfamily
TBH_C2084	SM00491	TBH_C2084
TBH_C2088	SM00382	ATPases associated with a variety of cellular activities
TBH_C2090	SM00788	Adenylosuccinate synthetase
TBH_C2093	SM00244	prohibitin homologues
TBH_C2094	SM00244	prohibitin homologues
TBH_C2098	SM00853	MutL C terminal dimerisation domain
TBH_C2098	SM01340	TBH_C2098
TBH_C2102	SM00257	Lysin motif
TBH_C2102	SM00646	TBH_C2102
TBH_C2106	SM00849	Metallo-beta-lactamase superfamily
TBH_C2108	SM01130	TBH_C2108
TBH_C2111	SM00670	Large family of predicted nucleotide-binding domains
TBH_C2112	SM00052	Putative diguanylate phosphodiesterase
TBH_C2113	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C2113	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C2115	SM00411	bacterial (prokaryotic) histone like domain
TBH_C2116	SM00316	Ribosomal protein S1-like RNA-binding domain
TBH_C2123	SM00073	Histidine Phosphotransfer domain
TBH_C2123	SM00260	Two component signalling adaptor domain
TBH_C2123	SM00387	Histidine kinase-like ATPases
TBH_C2123	SM01231	TBH_C2123
TBH_C2124	SM00260	Two component signalling adaptor domain
TBH_C2125	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TBH_C2125	SM00091	PAS domain
TBH_C2125	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TBH_C2125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C2127	SM00138	Methyltransferase, chemotaxis proteins 
TBH_C2128	SM00448	cheY-homologous receiver domain
TBH_C2129	SM00448	cheY-homologous receiver domain
TBH_C2131	SM00830	Chorismate mutase type II
TBH_C2134	SM00434	DNA Topoisomerase IV
TBH_C2144	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C2144	SM00419	helix_turn_helix, cAMP Regulatory protein
TBH_C2152	SM00327	von Willebrand factor (vWF) type A domain
TBH_C2154	SM00487	DEAD-like helicases superfamily
TBH_C2154	SM00490	helicase superfamily c-terminal domain
TBH_C2154	SM00847	Helicase associated domain (HA2)  Add an annotation
TBH_C2157	SM00450	Rhodanese Homology Domain
TBH_C2163	SM00938	Nitrogen regulatory protein P-II
TBH_C2168	SM00342	helix_turn_helix, arabinose operon control protein
TBH_C2174	SM00829	Enoylreductase
TBH_C2175	SM00450	Rhodanese Homology Domain
TBH_C2191	SM00369	Leucine-rich repeats, typical (most populated) subfamily
TBH_C2199	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C2213	SM00382	ATPases associated with a variety of cellular activities
TBH_C2214	SM00775	TBH_C2214
TBH_C2215	SM00421	helix_turn_helix, Lux Regulon
TBH_C2215	SM00448	cheY-homologous receiver domain
TBH_C2216	SM00091	PAS domain
TBH_C2216	SM00387	Histidine kinase-like ATPases
TBH_C2216	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2219	SM00487	DEAD-like helicases superfamily
TBH_C2219	SM00490	helicase superfamily c-terminal domain
TBH_C2244	SM00382	ATPases associated with a variety of cellular activities
TBH_C2245	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TBH_C2249	SM00267	diguanylate cyclase
TBH_C2249	SM01080	TBH_C2249
TBH_C2250	SM00257	Lysin motif
TBH_C2255	SM00834	Putative regulatory protein
TBH_C2259	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C2259	SM00245	tail specific protease
TBH_C2270	SM00382	ATPases associated with a variety of cellular activities
TBH_C2271	SM00100	Cyclic nucleotide-monophosphate binding domain
TBH_C2276	SM00642	Alpha-amylase domain
TBH_C2290	SM00387	Histidine kinase-like ATPases
TBH_C2290	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2291	SM00448	cheY-homologous receiver domain
TBH_C2291	SM00862	Transcriptional regulatory protein, C terminal
TBH_C2294	SM01236	TBH_C2294
TBH_C2303	SM00947	Carbonic anhydrase
TBH_C2305	SM00052	Putative diguanylate phosphodiesterase
TBH_C2305	SM00267	diguanylate cyclase
TBH_C2306	SM00240	Forkhead associated domain
TBH_C2307	SM00220	Serine/Threonine protein kinases, catalytic domain
TBH_C2308	SM00331	Sigma factor PP2C-like phosphatases
TBH_C2308	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
TBH_C2310	SM00347	helix_turn_helix multiple antibiotic resistance protein
TBH_C2313	SM00382	ATPases associated with a variety of cellular activities
TBH_C2317	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
TBH_C2317	SM01232	TBH_C2317
TBH_C2319	SM00072	Guanylate kinase homologues.
TBH_C2321	SM00220	Serine/Threonine protein kinases, catalytic domain
TBH_C2322	SM00331	Sigma factor PP2C-like phosphatases
TBH_C2322	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
TBH_C2340	SM00327	von Willebrand factor (vWF) type A domain
TBH_C2340	SM00564	beta-propeller repeat
TBH_C2344	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TBH_C2344	SM00091	PAS domain
TBH_C2344	SM00387	Histidine kinase-like ATPases
TBH_C2344	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2345	SM00421	helix_turn_helix, Lux Regulon
TBH_C2345	SM00448	cheY-homologous receiver domain
TBH_C2353	SM00849	Metallo-beta-lactamase superfamily
TBH_C2362	SM00938	Nitrogen regulatory protein P-II
TBH_C2365	SM00387	Histidine kinase-like ATPases
TBH_C2365	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2366	SM00382	ATPases associated with a variety of cellular activities
TBH_C2366	SM00448	cheY-homologous receiver domain
TBH_C2367	SM00869	Autotransporter beta-domain
TBH_C2368	SM00849	Metallo-beta-lactamase superfamily
TBH_C2373	SM00849	Metallo-beta-lactamase superfamily
TBH_C2374	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C2398	SM00855	Phosphoglycerate mutase family
TBH_C2420	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C2423	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TBH_C2423	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C2423	SM00387	Histidine kinase-like ATPases
TBH_C2423	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2431	SM00450	Rhodanese Homology Domain
TBH_C2433	SM00450	Rhodanese Homology Domain
TBH_C2434	SM00421	helix_turn_helix, Lux Regulon
TBH_C2434	SM00448	cheY-homologous receiver domain
TBH_C2435	SM00387	Histidine kinase-like ATPases
TBH_C2437	SM00382	ATPases associated with a variety of cellular activities
TBH_C2446	SM00363	S4 RNA-binding domain
TBH_C2469	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TBH_C2469	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C2469	SM00267	diguanylate cyclase
TBH_C2474	SM00382	ATPases associated with a variety of cellular activities
TBH_C2477	SM00411	bacterial (prokaryotic) histone like domain
TBH_C2480	SM00327	von Willebrand factor (vWF) type A domain
TBH_C2481	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C2486	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TBH_C2487	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TBH_C2487	SM00091	PAS domain
TBH_C2487	SM00448	cheY-homologous receiver domain
TBH_C2488	SM00387	Histidine kinase-like ATPases
TBH_C2488	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2491	SM00487	DEAD-like helicases superfamily
TBH_C2491	SM00490	helicase superfamily c-terminal domain
TBH_C2505	SM01004	Delta-aminolevulinic acid dehydratase
TBH_C2506	SM00387	Histidine kinase-like ATPases
TBH_C2506	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2507	SM00448	cheY-homologous receiver domain
TBH_C2507	SM00862	Transcriptional regulatory protein, C terminal
TBH_C2509	SM00382	ATPases associated with a variety of cellular activities
TBH_C2520	SM00271	DnaJ molecular chaperone homology domain
TBH_C2546	SM00984	UDP binding domain
TBH_C2549	SM00448	cheY-homologous receiver domain
TBH_C2549	SM00850	LytTr DNA-binding domain
TBH_C2554	SM00938	Nitrogen regulatory protein P-II
TBH_C2557	SM00382	ATPases associated with a variety of cellular activities
TBH_C2560	SM00387	Histidine kinase-like ATPases
TBH_C2560	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2560	SM00448	cheY-homologous receiver domain
TBH_C2562	SM00448	cheY-homologous receiver domain
TBH_C2562	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C2563	SM00382	ATPases associated with a variety of cellular activities
TBH_C2578	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
TBH_C2579	SM00861	Transketolase, pyrimidine binding domain
TBH_C2582	SM00996	S-adenosyl-L-homocysteine hydrolase
TBH_C2582	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
TBH_C2586	SM00073	Histidine Phosphotransfer domain
TBH_C2586	SM00260	Two component signalling adaptor domain
TBH_C2586	SM00387	Histidine kinase-like ATPases
TBH_C2586	SM00448	cheY-homologous receiver domain
TBH_C2586	SM01231	TBH_C2586
TBH_C2587	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TBH_C2588	SM00260	Two component signalling adaptor domain
TBH_C2589	SM00448	cheY-homologous receiver domain
TBH_C2590	SM00448	cheY-homologous receiver domain
TBH_C2591	SM00450	Rhodanese Homology Domain
TBH_C2597	SM00732	Likely ribonuclease with RNase H fold.
TBH_C2603	SM00382	ATPases associated with a variety of cellular activities
TBH_C2607	SM01152	TBH_C2607
TBH_C2618	SM00704	CDGSH-type zinc finger. Function unknown.
TBH_C2628	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C2632	SM00671	Sel1-like repeats.
TBH_C2638	SM00382	ATPases associated with a variety of cellular activities
TBH_C2638	SM00448	cheY-homologous receiver domain
TBH_C2640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TBH_C2640	SM00387	Histidine kinase-like ATPases
TBH_C2640	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2643	SM00478	endonuclease III
TBH_C2655	SM00450	Rhodanese Homology Domain
TBH_C2659	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TBH_C2660	SM00363	S4 RNA-binding domain
TBH_C2663	SM00267	diguanylate cyclase
TBH_C2668	SM00859	Semialdehyde dehydrogenase, NAD binding domain
TBH_C2682	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C2685	SM00318	Staphylococcal nuclease homologues
TBH_C2691	SM00612	TBH_C2691
TBH_C2692	SM00612	TBH_C2692
TBH_C2700	SM00899	TBH_C2700
TBH_C2703	SM00382	ATPases associated with a variety of cellular activities
TBH_C2716	SM00028	Tetratricopeptide repeats
TBH_C2731	SM00382	ATPases associated with a variety of cellular activities
TBH_C2742	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C2744	SM00028	Tetratricopeptide repeats
TBH_C2744	SM00267	diguanylate cyclase
TBH_C2747	SM01018	B12 binding domain
TBH_C2751	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
TBH_C2751	SM01232	TBH_C2751
TBH_C2753	SM00867	YceI-like domain 
TBH_C2761	SM00052	Putative diguanylate phosphodiesterase
TBH_C2761	SM00062	Bacterial periplasmic substrate-binding proteins
TBH_C2761	SM00267	diguanylate cyclase
TBH_C2765	SM01230	TBH_C2765
TBH_C2767	SM00671	Sel1-like repeats.
TBH_C2787	SM00387	Histidine kinase-like ATPases
TBH_C2787	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2788	SM00448	cheY-homologous receiver domain
TBH_C2788	SM00862	Transcriptional regulatory protein, C terminal
TBH_C2789	SM00020	Trypsin-like serine protease
TBH_C2792	SM00382	ATPases associated with a variety of cellular activities
TBH_C2808	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TBH_C2808	SM00091	PAS domain
TBH_C2808	SM00387	Histidine kinase-like ATPases
TBH_C2808	SM00388	His Kinase A (phosphoacceptor) domain
TBH_C2808	SM00448	cheY-homologous receiver domain
TBH_C2809	SM00421	helix_turn_helix, Lux Regulon
TBH_C2809	SM00448	cheY-homologous receiver domain
TBH_C2810	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TBH_C2814	SM00960	Roadblock/LC7 domain
TBH_C2816	SM00091	PAS domain
TBH_C2823	SM00028	Tetratricopeptide repeats
TBH_C2829	SM00382	ATPases associated with a variety of cellular activities
TBH_C2831	SM00357	Cold shock protein domain
TBH_C2838	SM00052	Putative diguanylate phosphodiesterase
TBH_C2838	SM00267	diguanylate cyclase
TBH_C2842	SM00382	ATPases associated with a variety of cellular activities
TBH_C2842	SM00464	Found in ATP-dependent protease La (LON)
TBH_C2843	SM00650	Ribosomal RNA adenine dimethylases
TBH_C2845	SM00729	Elongator protein 3, MiaB family, Radical SAM
TBH_C2848	SM00116	Domain in cystathionine beta-synthase and other proteins.
TBH_C2848	SM01091	Transporter associated domain
TBH_C2854	SM01228	TBH_C2854
TBH_C2857	SM00460	Transglutaminase/protease-like homologues
TBH_P207	SM00382	ATPases associated with a variety of cellular activities
TBH_P216	SM00901	TBH_P216
TBH_P217	SM00530	Helix-turn-helix XRE-family like proteins 
