locus-tag class description THMIRHAM_00010 PF00308 Bacterial dnaA protein THMIRHAM_00010 PF08299 Bacterial dnaA protein helix-turn-helix THMIRHAM_00010 PF11638 DnaA N-terminal domain THMIRHAM_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain THMIRHAM_00020 PF02767 DNA polymerase III beta subunit, central domain THMIRHAM_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain THMIRHAM_00030 PF01545 Cation efflux family THMIRHAM_00030 PF16916 Dimerisation domain of Zinc Transporter THMIRHAM_00040 PF02463 RecF/RecN/SMC N terminal domain THMIRHAM_00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_00060 PF18053 DNA gyrase B subunit insert domain THMIRHAM_00060 PF01751 Toprim domain THMIRHAM_00060 PF00204 DNA gyrase B THMIRHAM_00060 PF00986 DNA gyrase B subunit, carboxyl terminus THMIRHAM_00070 PF00485 Phosphoribulokinase / Uridine kinase family THMIRHAM_00100 PF01479 S4 domain THMIRHAM_00110 PF01218 Coproporphyrinogen III oxidase THMIRHAM_00120 PF00563 EAL domain THMIRHAM_00120 PF01590 GAF domain THMIRHAM_00120 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_00120 PF00360 Phytochrome region THMIRHAM_00150 PF01435 Peptidase family M48 THMIRHAM_00160 PF01300 Telomere recombination THMIRHAM_00170 PF01636 Phosphotransferase enzyme family THMIRHAM_00180 PF01612 3'-5' exonuclease THMIRHAM_00180 PF00476 DNA polymerase family A THMIRHAM_00180 PF01367 5'-3' exonuclease, C-terminal SAM fold THMIRHAM_00180 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THMIRHAM_00230 PF01926 50S ribosome-binding GTPase THMIRHAM_00240 PF05140 ResB-like family THMIRHAM_00250 PF01578 Cytochrome C assembly protein THMIRHAM_00260 PF13462 Thioredoxin THMIRHAM_00270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THMIRHAM_00270 PF00205 Thiamine pyrophosphate enzyme, central domain THMIRHAM_00270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THMIRHAM_00290 PF16124 RecQ zinc-binding THMIRHAM_00290 PF00570 HRDC domain THMIRHAM_00290 PF00271 Helicase conserved C-terminal domain THMIRHAM_00290 PF00270 DEAD/DEAH box helicase THMIRHAM_00290 PF09382 RQC domain THMIRHAM_00310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_00310 PF03466 LysR substrate binding domain THMIRHAM_00330 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_00330 PF09308 LuxQ, periplasmic THMIRHAM_00330 PF00072 Response regulator receiver domain THMIRHAM_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_00340 PF06965 Na+/H+ antiporter 1 THMIRHAM_00350 PF03600 Citrate transporter THMIRHAM_00370 PF18030 RimK PreATP-grasp domain THMIRHAM_00370 PF08443 RimK-like ATP-grasp domain THMIRHAM_00380 PF00072 Response regulator receiver domain THMIRHAM_00410 PF01037 Lrp/AsnC ligand binding domain THMIRHAM_00420 PF08502 LeuA allosteric (dimerisation) domain THMIRHAM_00420 PF00682 HMGL-like THMIRHAM_00430 PF01613 Flavin reductase like domain THMIRHAM_00460 PF01022 Bacterial regulatory protein, arsR family THMIRHAM_00470 PF03773 Predicted permease THMIRHAM_00500 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THMIRHAM_00500 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THMIRHAM_00520 PF01894 Uncharacterised protein family UPF0047 THMIRHAM_00530 PF01432 Peptidase family M3 THMIRHAM_00570 PF08281 Sigma-70, region 4 THMIRHAM_00570 PF04542 Sigma-70 region 2 THMIRHAM_00590 PF07690 Major Facilitator Superfamily THMIRHAM_00600 PF00501 AMP-binding enzyme THMIRHAM_00600 PF01553 Acyltransferase THMIRHAM_00620 PF13519 von Willebrand factor type A domain THMIRHAM_00620 PF07584 Aerotolerance regulator N-terminal THMIRHAM_00650 PF01882 Protein of unknown function DUF58 THMIRHAM_00660 PF17863 AAA lid domain THMIRHAM_00660 PF07726 ATPase family associated with various cellular activities (AAA) THMIRHAM_00670 PF08447 PAS fold THMIRHAM_00670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_00670 PF08447 PAS fold THMIRHAM_00670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_00680 PF01268 Formate--tetrahydrofolate ligase THMIRHAM_00690 PF13183 4Fe-4S dicluster domain THMIRHAM_00690 PF02754 Cysteine-rich domain THMIRHAM_00700 PF01565 FAD binding domain THMIRHAM_00710 PF02913 FAD linked oxidases, C-terminal domain THMIRHAM_00710 PF01565 FAD binding domain THMIRHAM_00720 PF00266 Aminotransferase class-V THMIRHAM_00730 PF00563 EAL domain THMIRHAM_00730 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_00730 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_00750 PF01590 GAF domain THMIRHAM_00750 PF00360 Phytochrome region THMIRHAM_00750 PF00563 EAL domain THMIRHAM_00750 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_00760 PF00072 Response regulator receiver domain THMIRHAM_00770 PF08003 Protein of unknown function (DUF1698) THMIRHAM_00780 PF13649 Methyltransferase domain THMIRHAM_00790 PF01464 Transglycosylase SLT domain THMIRHAM_00790 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain THMIRHAM_00810 PF01223 DNA/RNA non-specific endonuclease THMIRHAM_00820 PF13847 Methyltransferase domain THMIRHAM_00840 PF13520 Amino acid permease THMIRHAM_00850 PF00873 AcrB/AcrD/AcrF family THMIRHAM_00860 PF00529 HlyD membrane-fusion protein of T1SS THMIRHAM_00860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THMIRHAM_00870 PF05275 Copper resistance protein B precursor (CopB) THMIRHAM_00880 PF07731 Multicopper oxidase THMIRHAM_00880 PF07732 Multicopper oxidase THMIRHAM_00880 PF00394 Multicopper oxidase THMIRHAM_00900 PF00563 EAL domain THMIRHAM_00900 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_00900 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_00920 PF01966 HD domain THMIRHAM_00920 PF01966 HD domain THMIRHAM_00930 PF00581 Rhodanese-like domain THMIRHAM_00950 PF07690 Major Facilitator Superfamily THMIRHAM_00960 PF07726 ATPase family associated with various cellular activities (AAA) THMIRHAM_00960 PF17863 AAA lid domain THMIRHAM_00970 PF01882 Protein of unknown function DUF58 THMIRHAM_00990 PF13519 von Willebrand factor type A domain THMIRHAM_01000 PF13519 von Willebrand factor type A domain THMIRHAM_01030 PF00085 Thioredoxin THMIRHAM_01080 PF00069 Protein kinase domain THMIRHAM_01080 PF03793 PASTA domain THMIRHAM_01100 PF00156 Phosphoribosyl transferase domain THMIRHAM_01110 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_01110 PF00072 Response regulator receiver domain THMIRHAM_01120 PF00849 RNA pseudouridylate synthase THMIRHAM_01120 PF01479 S4 domain THMIRHAM_01130 PF14698 Argininosuccinate lyase C-terminal THMIRHAM_01130 PF00206 Lyase THMIRHAM_01150 PF03900 Porphobilinogen deaminase, C-terminal domain THMIRHAM_01150 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain THMIRHAM_01200 PF00970 Oxidoreductase FAD-binding domain THMIRHAM_01200 PF00111 2Fe-2S iron-sulfur cluster binding domain THMIRHAM_01200 PF00175 Oxidoreductase NAD-binding domain THMIRHAM_01210 PF03372 Endonuclease/Exonuclease/phosphatase family THMIRHAM_01220 PF00551 Formyl transferase THMIRHAM_01220 PF01842 ACT domain THMIRHAM_01230 PF08351 Domain of unknown function (DUF1726) THMIRHAM_01230 PF13718 GNAT acetyltransferase 2 THMIRHAM_01230 PF05127 Helicase THMIRHAM_01230 PF17176 tRNA-binding domain THMIRHAM_01240 PF00563 EAL domain THMIRHAM_01240 PF08448 PAS fold THMIRHAM_01240 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_01250 PF00581 Rhodanese-like domain THMIRHAM_01260 PF01641 SelR domain THMIRHAM_01270 PF01266 FAD dependent oxidoreductase THMIRHAM_01270 PF05430 S-adenosyl-L-methionine-dependent methyltransferase THMIRHAM_01300 PF08543 Phosphomethylpyrimidine kinase THMIRHAM_01320 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_01320 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_01320 PF00563 EAL domain THMIRHAM_01340 PF12704 MacB-like periplasmic core domain THMIRHAM_01340 PF02687 FtsX-like permease family THMIRHAM_01340 PF00005 ABC transporter THMIRHAM_01350 PF12704 MacB-like periplasmic core domain THMIRHAM_01350 PF02687 FtsX-like permease family THMIRHAM_01350 PF00005 ABC transporter THMIRHAM_01390 PF00462 Glutaredoxin THMIRHAM_01390 PF08534 Redoxin THMIRHAM_01400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THMIRHAM_01400 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_01410 PF00563 EAL domain THMIRHAM_01410 PF12792 CSS motif domain associated with EAL THMIRHAM_01440 PF00132 Bacterial transferase hexapeptide (six repeats) THMIRHAM_01460 PF08501 Shikimate dehydrogenase substrate binding domain THMIRHAM_01460 PF01488 Shikimate / quinate 5-dehydrogenase THMIRHAM_01460 PF18317 Shikimate 5'-dehydrogenase C-terminal domain THMIRHAM_01470 PF00490 Delta-aminolevulinic acid dehydratase THMIRHAM_01510 PF06463 Molybdenum Cofactor Synthesis C THMIRHAM_01510 PF04055 Radical SAM superfamily THMIRHAM_01520 PF02597 ThiS family THMIRHAM_01530 PF02391 MoaE protein THMIRHAM_01540 PF03453 MoeA N-terminal region (domain I and II) THMIRHAM_01540 PF03454 MoeA C-terminal region (domain IV) THMIRHAM_01540 PF00994 Probable molybdopterin binding domain THMIRHAM_01550 PF01967 MoaC family THMIRHAM_01560 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_01570 PF01541 GIY-YIG catalytic domain THMIRHAM_01580 PF00271 Helicase conserved C-terminal domain THMIRHAM_01580 PF00270 DEAD/DEAH box helicase THMIRHAM_01580 PF03880 DbpA RNA binding domain THMIRHAM_01590 PF02560 Cyanate lyase C-terminal domain THMIRHAM_01620 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_01620 PF18113 Rubredoxin binding C-terminal domain THMIRHAM_01630 PF01590 GAF domain THMIRHAM_01630 PF02954 Bacterial regulatory protein, Fis family THMIRHAM_01630 PF00158 Sigma-54 interaction domain THMIRHAM_01660 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_01680 PF00005 ABC transporter THMIRHAM_01690 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_01690 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_01690 PF00563 EAL domain THMIRHAM_01700 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_01700 PF00563 EAL domain THMIRHAM_01700 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_01710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component THMIRHAM_01740 PF00270 DEAD/DEAH box helicase THMIRHAM_01740 PF00271 Helicase conserved C-terminal domain THMIRHAM_01740 PF17764 3′ DNA-binding domain (3′BD) THMIRHAM_01740 PF18074 Primosomal protein N C-terminal domain THMIRHAM_01740 PF18319 PriA DNA helicase Cys-rich region (CRR) domain THMIRHAM_01770 PF08241 Methyltransferase domain THMIRHAM_01780 PF00561 alpha/beta hydrolase fold THMIRHAM_01800 PF00155 Aminotransferase class I and II THMIRHAM_01810 PF06968 Biotin and Thiamin Synthesis associated domain THMIRHAM_01810 PF04055 Radical SAM superfamily THMIRHAM_01820 PF00156 Phosphoribosyl transferase domain THMIRHAM_01830 PF01545 Cation efflux family THMIRHAM_01840 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_01840 PF00072 Response regulator receiver domain THMIRHAM_01860 PF00672 HAMP domain THMIRHAM_01860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_01860 PF02203 Tar ligand binding domain homologue THMIRHAM_01880 PF00902 Sec-independent protein translocase protein (TatC) THMIRHAM_01890 PF02416 mttA/Hcf106 family THMIRHAM_01900 PF02416 mttA/Hcf106 family THMIRHAM_01910 PF01230 HIT domain THMIRHAM_01920 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase THMIRHAM_01930 PF00977 Histidine biosynthesis protein THMIRHAM_01940 PF00977 Histidine biosynthesis protein THMIRHAM_01950 PF00117 Glutamine amidotransferase class-I THMIRHAM_01960 PF00475 Imidazoleglycerol-phosphate dehydratase THMIRHAM_01970 PF00115 Cytochrome C and Quinol oxidase polypeptide I THMIRHAM_02000 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THMIRHAM_02000 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP THMIRHAM_02020 PF12801 4Fe-4S binding domain THMIRHAM_02020 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase THMIRHAM_02020 PF13746 4Fe-4S dicluster domain THMIRHAM_02040 PF00403 Heavy-metal-associated domain THMIRHAM_02090 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_02090 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_02090 PF00563 EAL domain THMIRHAM_02100 PF02580 D-Tyr-tRNA(Tyr) deacylase THMIRHAM_02110 PF00561 alpha/beta hydrolase fold THMIRHAM_02120 PF00072 Response regulator receiver domain THMIRHAM_02120 PF09308 LuxQ, periplasmic THMIRHAM_02120 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_02140 PF00679 Elongation factor G C-terminus THMIRHAM_02140 PF00009 Elongation factor Tu GTP binding domain THMIRHAM_02140 PF03144 Elongation factor Tu domain 2 THMIRHAM_02160 PF04143 Sulphur transport THMIRHAM_02170 PF05661 Protein of unknown function (DUF808) THMIRHAM_02200 PF02607 B12 binding domain THMIRHAM_02200 PF02965 Vitamin B12 dependent methionine synthase, activation domain THMIRHAM_02200 PF00809 Pterin binding enzyme THMIRHAM_02200 PF02574 Homocysteine S-methyltransferase THMIRHAM_02200 PF02310 B12 binding domain THMIRHAM_02220 PF05958 tRNA (Uracil-5-)-methyltransferase THMIRHAM_02230 PF01925 Sulfite exporter TauE/SafE THMIRHAM_02240 PF03475 3-alpha domain THMIRHAM_02240 PF03473 MOSC domain THMIRHAM_02260 PF01171 PP-loop family THMIRHAM_02280 PF00892 EamA-like transporter family THMIRHAM_02320 PF02386 Cation transport protein THMIRHAM_02330 PF02254 TrkA-N domain THMIRHAM_02330 PF02080 TrkA-C domain THMIRHAM_02340 PF00158 Sigma-54 interaction domain THMIRHAM_02340 PF00072 Response regulator receiver domain THMIRHAM_02340 PF02954 Bacterial regulatory protein, Fis family THMIRHAM_02350 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_02350 PF00989 PAS fold THMIRHAM_02350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_02350 PF00672 HAMP domain THMIRHAM_02370 PF01189 16S rRNA methyltransferase RsmB/F THMIRHAM_02370 PF01029 NusB family THMIRHAM_02380 PF00551 Formyl transferase THMIRHAM_02380 PF02911 Formyl transferase, C-terminal domain THMIRHAM_02390 PF01327 Polypeptide deformylase THMIRHAM_02400 PF02481 DNA recombination-mediator protein A THMIRHAM_02400 PF17782 DprA winged helix domain THMIRHAM_02420 PF01131 DNA topoisomerase THMIRHAM_02420 PF01751 Toprim domain THMIRHAM_02420 PF13368 Topoisomerase C-terminal repeat THMIRHAM_02430 PF03485 Arginyl tRNA synthetase N terminal domain THMIRHAM_02430 PF05746 DALR anticodon binding domain THMIRHAM_02430 PF00750 tRNA synthetases class I (R) THMIRHAM_02450 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_02460 PF04380 Membrane fusogenic activity THMIRHAM_02470 PF01078 Magnesium chelatase, subunit ChlI THMIRHAM_02470 PF13335 Magnesium chelatase, subunit ChlI C-terminal THMIRHAM_02500 PF00196 Bacterial regulatory proteins, luxR family THMIRHAM_02500 PF00072 Response regulator receiver domain THMIRHAM_02520 PF00664 ABC transporter transmembrane region THMIRHAM_02520 PF00005 ABC transporter THMIRHAM_02520 PF03412 Peptidase C39 family THMIRHAM_02530 PF17153 Periplasmic sensor domain, extracellular THMIRHAM_02530 PF00563 EAL domain THMIRHAM_02550 PF00691 OmpA family THMIRHAM_02560 PF00465 Iron-containing alcohol dehydrogenase THMIRHAM_02570 PF13361 UvrD-like helicase C-terminal domain THMIRHAM_02570 PF00580 UvrD/REP helicase N-terminal domain THMIRHAM_02580 PF05175 Methyltransferase small domain THMIRHAM_02610 PF01142 tRNA pseudouridine synthase D (TruD) THMIRHAM_02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_02620 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_02620 PF09308 LuxQ, periplasmic THMIRHAM_02620 PF00072 Response regulator receiver domain THMIRHAM_02630 PF12804 MobA-like NTP transferase domain THMIRHAM_02640 PF01502 Phosphoribosyl-AMP cyclohydrolase THMIRHAM_02690 PF02595 Glycerate kinase family THMIRHAM_02700 PF00072 Response regulator receiver domain THMIRHAM_02700 PF13188 PAS domain THMIRHAM_02700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_02700 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_02700 PF08448 PAS fold THMIRHAM_02710 PF13188 PAS domain THMIRHAM_02710 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_02710 PF00563 EAL domain THMIRHAM_02710 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_02720 PF00583 Acetyltransferase (GNAT) family THMIRHAM_02730 PF00202 Aminotransferase class-III THMIRHAM_02740 PF06339 Ectoine synthase THMIRHAM_02750 PF13840 ACT domain THMIRHAM_02750 PF00696 Amino acid kinase family THMIRHAM_02770 PF00474 Sodium:solute symporter family THMIRHAM_02790 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_02790 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_02790 PF00563 EAL domain THMIRHAM_02800 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain THMIRHAM_02800 PF02777 Iron/manganese superoxide dismutases, C-terminal domain THMIRHAM_02810 PF05166 YcgL domain THMIRHAM_02830 PF01743 Poly A polymerase head domain THMIRHAM_02830 PF01966 HD domain THMIRHAM_02830 PF12627 Probable RNA and SrmB- binding site of polymerase A THMIRHAM_02850 PF00873 AcrB/AcrD/AcrF family THMIRHAM_02860 PF00456 Transketolase, thiamine diphosphate binding domain THMIRHAM_02860 PF02779 Transketolase, pyrimidine binding domain THMIRHAM_02860 PF02780 Transketolase, C-terminal domain THMIRHAM_02870 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THMIRHAM_02870 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THMIRHAM_02880 PF00162 Phosphoglycerate kinase THMIRHAM_02890 PF02887 Pyruvate kinase, alpha/beta domain THMIRHAM_02890 PF00224 Pyruvate kinase, barrel domain THMIRHAM_02900 PF01116 Fructose-bisphosphate aldolase class-II THMIRHAM_02910 PF00672 HAMP domain THMIRHAM_02910 PF02203 Tar ligand binding domain homologue THMIRHAM_02910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_02920 PF00085 Thioredoxin THMIRHAM_02930 PF00072 Response regulator receiver domain THMIRHAM_02940 PF00072 Response regulator receiver domain THMIRHAM_02940 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THMIRHAM_02940 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_02940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_02940 PF00672 HAMP domain THMIRHAM_02940 PF01627 Hpt domain THMIRHAM_02970 PF08406 CbbQ/NirQ/NorQ C-terminal THMIRHAM_02970 PF07728 AAA domain (dynein-related subfamily) THMIRHAM_02980 PF00101 Ribulose bisphosphate carboxylase, small chain THMIRHAM_02990 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THMIRHAM_02990 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THMIRHAM_03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_03000 PF03466 LysR substrate binding domain THMIRHAM_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_03010 PF03466 LysR substrate binding domain THMIRHAM_03020 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THMIRHAM_03020 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THMIRHAM_03030 PF07728 AAA domain (dynein-related subfamily) THMIRHAM_03030 PF08406 CbbQ/NirQ/NorQ C-terminal THMIRHAM_03040 PF00092 von Willebrand factor type A domain THMIRHAM_03070 PF00484 Carbonic anhydrase THMIRHAM_03080 PF00486 Transcriptional regulatory protein, C terminal THMIRHAM_03080 PF00072 Response regulator receiver domain THMIRHAM_03090 PF02743 Cache domain THMIRHAM_03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_03090 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_03120 PF00873 AcrB/AcrD/AcrF family THMIRHAM_03150 PF01259 SAICAR synthetase THMIRHAM_03170 PF00834 Ribulose-phosphate 3 epimerase family THMIRHAM_03180 PF13419 Haloacid dehalogenase-like hydrolase THMIRHAM_03200 PF00425 chorismate binding enzyme THMIRHAM_03200 PF04715 Anthranilate synthase component I, N terminal region THMIRHAM_03210 PF00117 Glutamine amidotransferase class-I THMIRHAM_03220 PF00591 Glycosyl transferase family, a/b domain THMIRHAM_03220 PF02885 Glycosyl transferase family, helical bundle domain THMIRHAM_03230 PF04304 Protein of unknown function (DUF454) THMIRHAM_03240 PF00218 Indole-3-glycerol phosphate synthase THMIRHAM_03270 PF02675 S-adenosylmethionine decarboxylase THMIRHAM_03280 PF17284 Spermidine synthase tetramerisation domain THMIRHAM_03290 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THMIRHAM_03290 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THMIRHAM_03300 PF02566 OsmC-like protein THMIRHAM_03310 PF01544 CorA-like Mg2+ transporter protein THMIRHAM_03330 PF06968 Biotin and Thiamin Synthesis associated domain THMIRHAM_03330 PF04055 Radical SAM superfamily THMIRHAM_03330 PF00202 Aminotransferase class-III THMIRHAM_03340 PF00849 RNA pseudouridylate synthase THMIRHAM_03350 PF03144 Elongation factor Tu domain 2 THMIRHAM_03350 PF03143 Elongation factor Tu C-terminal domain THMIRHAM_03350 PF00009 Elongation factor Tu GTP binding domain THMIRHAM_03360 PF00584 SecE/Sec61-gamma subunits of protein translocation complex THMIRHAM_03370 PF00467 KOW motif THMIRHAM_03370 PF02357 Transcription termination factor nusG THMIRHAM_03380 PF00298 Ribosomal protein L11, RNA binding domain THMIRHAM_03380 PF03946 Ribosomal protein L11, N-terminal domain THMIRHAM_03390 PF00687 Ribosomal protein L1p/L10e family THMIRHAM_03400 PF00466 Ribosomal protein L10 THMIRHAM_03410 PF00542 Ribosomal protein L7/L12 C-terminal domain THMIRHAM_03410 PF16320 Ribosomal protein L7/L12 dimerisation domain THMIRHAM_03420 PF04563 RNA polymerase beta subunit THMIRHAM_03420 PF04561 RNA polymerase Rpb2, domain 2 THMIRHAM_03420 PF04560 RNA polymerase Rpb2, domain 7 THMIRHAM_03420 PF04565 RNA polymerase Rpb2, domain 3 THMIRHAM_03420 PF00562 RNA polymerase Rpb2, domain 6 THMIRHAM_03420 PF10385 RNA polymerase beta subunit external 1 domain THMIRHAM_03430 PF05000 RNA polymerase Rpb1, domain 4 THMIRHAM_03430 PF00623 RNA polymerase Rpb1, domain 2 THMIRHAM_03430 PF04983 RNA polymerase Rpb1, domain 3 THMIRHAM_03430 PF04997 RNA polymerase Rpb1, domain 1 THMIRHAM_03430 PF04998 RNA polymerase Rpb1, domain 5 THMIRHAM_03440 PF00164 Ribosomal protein S12/S23 THMIRHAM_03450 PF00177 Ribosomal protein S7p/S5e THMIRHAM_03460 PF03144 Elongation factor Tu domain 2 THMIRHAM_03460 PF00009 Elongation factor Tu GTP binding domain THMIRHAM_03460 PF03764 Elongation factor G, domain IV THMIRHAM_03460 PF14492 Elongation Factor G, domain II THMIRHAM_03460 PF00679 Elongation factor G C-terminus THMIRHAM_03470 PF00009 Elongation factor Tu GTP binding domain THMIRHAM_03470 PF03144 Elongation factor Tu domain 2 THMIRHAM_03470 PF03143 Elongation factor Tu C-terminal domain THMIRHAM_03480 PF00338 Ribosomal protein S10p/S20e THMIRHAM_03490 PF00297 Ribosomal protein L3 THMIRHAM_03500 PF00573 Ribosomal protein L4/L1 family THMIRHAM_03510 PF00276 Ribosomal protein L23 THMIRHAM_03520 PF00181 Ribosomal Proteins L2, RNA binding domain THMIRHAM_03520 PF03947 Ribosomal Proteins L2, C-terminal domain THMIRHAM_03530 PF00203 Ribosomal protein S19 THMIRHAM_03540 PF00237 Ribosomal protein L22p/L17e THMIRHAM_03550 PF00189 Ribosomal protein S3, C-terminal domain THMIRHAM_03550 PF07650 KH domain THMIRHAM_03560 PF00252 Ribosomal protein L16p/L10e THMIRHAM_03570 PF00831 Ribosomal L29 protein THMIRHAM_03580 PF00366 Ribosomal protein S17 THMIRHAM_03590 PF00238 Ribosomal protein L14p/L23e THMIRHAM_03600 PF00467 KOW motif THMIRHAM_03600 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 THMIRHAM_03610 PF00281 Ribosomal protein L5 THMIRHAM_03610 PF00673 ribosomal L5P family C-terminus THMIRHAM_03620 PF00253 Ribosomal protein S14p/S29e THMIRHAM_03630 PF00410 Ribosomal protein S8 THMIRHAM_03640 PF00347 Ribosomal protein L6 THMIRHAM_03650 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast THMIRHAM_03660 PF00333 Ribosomal protein S5, N-terminal domain THMIRHAM_03660 PF03719 Ribosomal protein S5, C-terminal domain THMIRHAM_03670 PF00327 Ribosomal protein L30p/L7e THMIRHAM_03680 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A THMIRHAM_03690 PF00344 SecY translocase THMIRHAM_03700 PF00416 Ribosomal protein S13/S18 THMIRHAM_03710 PF00411 Ribosomal protein S11 THMIRHAM_03720 PF00163 Ribosomal protein S4/S9 N-terminal domain THMIRHAM_03720 PF01479 S4 domain THMIRHAM_03730 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain THMIRHAM_03730 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain THMIRHAM_03730 PF01000 RNA polymerase Rpb3/RpoA insert domain THMIRHAM_03740 PF01196 Ribosomal protein L17 THMIRHAM_03760 PF00899 ThiF family THMIRHAM_03780 PF17755 UvrA DNA-binding domain THMIRHAM_03780 PF17760 UvrA interaction domain THMIRHAM_03800 PF07690 Major Facilitator Superfamily THMIRHAM_03810 PF00436 Single-strand binding protein family THMIRHAM_03820 PF12795 Mechanosensitive ion channel porin domain THMIRHAM_03820 PF12794 Mechanosensitive ion channel inner membrane domain 1 THMIRHAM_03820 PF00924 Mechanosensitive ion channel THMIRHAM_03830 PF00691 OmpA family THMIRHAM_03850 PF05552 Conserved TM helix THMIRHAM_03870 PF08281 Sigma-70, region 4 THMIRHAM_03870 PF04542 Sigma-70 region 2 THMIRHAM_03880 PF01595 Cyclin M transmembrane N-terminal domain THMIRHAM_03880 PF03471 Transporter associated domain THMIRHAM_03880 PF00571 CBS domain THMIRHAM_03890 PF03448 MgtE intracellular N domain THMIRHAM_03890 PF01769 Divalent cation transporter THMIRHAM_03890 PF00571 CBS domain THMIRHAM_03900 PF18030 RimK PreATP-grasp domain THMIRHAM_03900 PF08443 RimK-like ATP-grasp domain THMIRHAM_03910 PF18030 RimK PreATP-grasp domain THMIRHAM_03910 PF08443 RimK-like ATP-grasp domain THMIRHAM_03930 PF02321 Outer membrane efflux protein THMIRHAM_03940 PF00873 AcrB/AcrD/AcrF family THMIRHAM_03950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THMIRHAM_03950 PF00529 HlyD membrane-fusion protein of T1SS THMIRHAM_03990 PF00348 Polyprenyl synthetase THMIRHAM_04000 PF00829 Ribosomal prokaryotic L21 protein THMIRHAM_04010 PF01016 Ribosomal L27 protein THMIRHAM_04020 PF01018 GTP1/OBG THMIRHAM_04020 PF01926 50S ribosome-binding GTPase THMIRHAM_04030 PF00696 Amino acid kinase family THMIRHAM_04030 PF01472 PUA domain THMIRHAM_04040 PF00166 Chaperonin 10 Kd subunit THMIRHAM_04050 PF00118 TCP-1/cpn60 chaperonin family THMIRHAM_04070 PF00563 EAL domain THMIRHAM_04070 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_04070 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_04080 PF01794 Ferric reductase like transmembrane component THMIRHAM_04090 PF00174 Oxidoreductase molybdopterin binding domain THMIRHAM_04100 PF01118 Semialdehyde dehydrogenase, NAD binding domain THMIRHAM_04100 PF02774 Semialdehyde dehydrogenase, dimerisation domain THMIRHAM_04110 PF01521 Iron-sulphur cluster biosynthesis THMIRHAM_04120 PF00285 Citrate synthase, C-terminal domain THMIRHAM_04130 PF03702 Anhydro-N-acetylmuramic acid kinase THMIRHAM_04140 PF04225 Opacity-associated protein A LysM-like domain THMIRHAM_04140 PF01551 Peptidase family M23 THMIRHAM_04150 PF01206 Sulfurtransferase TusA THMIRHAM_04160 PF02091 Glycyl-tRNA synthetase alpha subunit THMIRHAM_04170 PF02092 Glycyl-tRNA synthetase beta subunit THMIRHAM_04170 PF05746 DALR anticodon binding domain THMIRHAM_04200 PF01618 MotA/TolQ/ExbB proton channel family THMIRHAM_04230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_04230 PF00672 HAMP domain THMIRHAM_04230 PF02203 Tar ligand binding domain homologue THMIRHAM_04240 PF00672 HAMP domain THMIRHAM_04240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_04240 PF02203 Tar ligand binding domain homologue THMIRHAM_04260 PF03167 Uracil DNA glycosylase superfamily THMIRHAM_04270 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region THMIRHAM_04270 PF01243 Pyridoxamine 5'-phosphate oxidase THMIRHAM_04280 PF01751 Toprim domain THMIRHAM_04280 PF00986 DNA gyrase B subunit, carboxyl terminus THMIRHAM_04280 PF00204 DNA gyrase B THMIRHAM_04280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_04300 PF08447 PAS fold THMIRHAM_04300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_04300 PF08447 PAS fold THMIRHAM_04300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_04330 PF02696 Uncharacterized ACR, YdiU/UPF0061 family THMIRHAM_04350 PF00521 DNA gyrase/topoisomerase IV, subunit A THMIRHAM_04350 PF03989 DNA gyrase C-terminal domain, beta-propeller THMIRHAM_04360 PF01618 MotA/TolQ/ExbB proton channel family THMIRHAM_04370 PF00691 OmpA family THMIRHAM_04370 PF13677 Membrane MotB of proton-channel complex MotA/MotB THMIRHAM_04380 PF00899 ThiF family THMIRHAM_04390 PF13847 Methyltransferase domain THMIRHAM_04390 PF17827 PrmC N-terminal domain THMIRHAM_04400 PF03462 PCRF domain THMIRHAM_04400 PF00472 RF-1 domain THMIRHAM_04410 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain THMIRHAM_04410 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain THMIRHAM_04410 PF01488 Shikimate / quinate 5-dehydrogenase THMIRHAM_04430 PF14572 Phosphoribosyl synthetase-associated domain THMIRHAM_04430 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THMIRHAM_04440 PF01386 Ribosomal L25p family THMIRHAM_04440 PF14693 Ribosomal protein TL5, C-terminal domain THMIRHAM_04450 PF01195 Peptidyl-tRNA hydrolase THMIRHAM_04460 PF06071 Protein of unknown function (DUF933) THMIRHAM_04460 PF01926 50S ribosome-binding GTPase THMIRHAM_04490 PF03109 ABC1 family THMIRHAM_04510 PF01209 ubiE/COQ5 methyltransferase family THMIRHAM_04530 PF07724 AAA domain (Cdc48 subfamily) THMIRHAM_04530 PF10431 C-terminal, D2-small domain, of ClpB protein THMIRHAM_04530 PF00004 ATPase family associated with various cellular activities (AAA) THMIRHAM_04540 PF01678 Diaminopimelate epimerase THMIRHAM_04560 PF02899 Phage integrase, N-terminal SAM-like domain THMIRHAM_04560 PF00589 Phage integrase family THMIRHAM_04570 PF00227 Proteasome subunit THMIRHAM_04600 PF00665 Integrase core domain THMIRHAM_04600 PF13276 HTH-like domain THMIRHAM_04600 PF13333 Integrase core domain THMIRHAM_04610 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) THMIRHAM_04620 PF00571 CBS domain THMIRHAM_04620 PF01380 SIS domain THMIRHAM_04650 PF00294 pfkB family carbohydrate kinase THMIRHAM_04650 PF01467 Cytidylyltransferase-like THMIRHAM_04660 PF13580 SIS domain THMIRHAM_04670 PF02685 Glucokinase THMIRHAM_04680 PF00483 Nucleotidyl transferase THMIRHAM_04700 PF02446 4-alpha-glucanotransferase THMIRHAM_04710 PF00128 Alpha amylase, catalytic domain THMIRHAM_04710 PF02806 Alpha amylase, C-terminal all-beta domain THMIRHAM_04710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THMIRHAM_04720 PF00534 Glycosyl transferases group 1 THMIRHAM_04720 PF08323 Starch synthase catalytic domain THMIRHAM_04730 PF00343 Carbohydrate phosphorylase THMIRHAM_04750 PF01380 SIS domain THMIRHAM_04760 PF02719 Polysaccharide biosynthesis protein THMIRHAM_04770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THMIRHAM_04780 PF02348 Cytidylyltransferase THMIRHAM_04790 PF04101 Glycosyltransferase family 28 C-terminal domain THMIRHAM_04790 PF03033 Glycosyltransferase family 28 N-terminal domain THMIRHAM_04810 PF03102 NeuB family THMIRHAM_04810 PF08666 SAF domain THMIRHAM_04880 PF08323 Starch synthase catalytic domain THMIRHAM_04880 PF00534 Glycosyl transferases group 1 THMIRHAM_04890 PF02397 Bacterial sugar transferase THMIRHAM_04910 PF01068 ATP dependent DNA ligase domain THMIRHAM_04910 PF14743 DNA ligase OB-like domain THMIRHAM_04930 PF00155 Aminotransferase class I and II THMIRHAM_04940 PF00271 Helicase conserved C-terminal domain THMIRHAM_04940 PF04851 Type III restriction enzyme, res subunit THMIRHAM_04940 PF02151 UvrB/uvrC motif THMIRHAM_04940 PF12344 Ultra-violet resistance protein B THMIRHAM_04940 PF17757 UvrB interaction domain THMIRHAM_04980 PF00437 Type II/IV secretion system protein THMIRHAM_04990 PF00437 Type II/IV secretion system protein THMIRHAM_05020 PF00883 Cytosol aminopeptidase family, catalytic domain THMIRHAM_05020 PF02789 Cytosol aminopeptidase family, N-terminal domain THMIRHAM_05030 PF03739 Lipopolysaccharide export system permease LptF/LptG THMIRHAM_05040 PF03739 Lipopolysaccharide export system permease LptF/LptG THMIRHAM_05050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THMIRHAM_05050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THMIRHAM_05050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THMIRHAM_05050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THMIRHAM_05060 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THMIRHAM_05060 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THMIRHAM_05060 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THMIRHAM_05070 PF00342 Phosphoglucose isomerase THMIRHAM_05080 PF00483 Nucleotidyl transferase THMIRHAM_05100 PF00005 ABC transporter THMIRHAM_05120 PF00067 Cytochrome P450 THMIRHAM_05150 PF00067 Cytochrome P450 THMIRHAM_05170 PF05159 Capsule polysaccharide biosynthesis protein THMIRHAM_05180 PF05159 Capsule polysaccharide biosynthesis protein THMIRHAM_05200 PF02563 Polysaccharide biosynthesis/export protein THMIRHAM_05200 PF10531 SLBB domain THMIRHAM_05210 PF01061 ABC-2 type transporter THMIRHAM_05220 PF00005 ABC transporter THMIRHAM_05240 PF00483 Nucleotidyl transferase THMIRHAM_05260 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase THMIRHAM_05280 PF04321 RmlD substrate binding domain THMIRHAM_05310 PF16363 GDP-mannose 4,6 dehydratase THMIRHAM_05360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THMIRHAM_05410 PF00535 Glycosyl transferase family 2 THMIRHAM_05420 PF01507 Phosphoadenosine phosphosulfate reductase family THMIRHAM_05440 PF00009 Elongation factor Tu GTP binding domain THMIRHAM_05450 PF03600 Citrate transporter THMIRHAM_05450 PF02080 TrkA-C domain THMIRHAM_05470 PF00459 Inositol monophosphatase family THMIRHAM_05500 PF02899 Phage integrase, N-terminal SAM-like domain THMIRHAM_05500 PF00589 Phage integrase family THMIRHAM_05540 PF12008 Type I restriction and modification enzyme - subunit R C terminal THMIRHAM_05540 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) THMIRHAM_05540 PF18766 SWI2/SNF2 ATPase THMIRHAM_05560 PF01420 Type I restriction modification DNA specificity domain THMIRHAM_05620 PF08751 TrwC relaxase THMIRHAM_05620 PF18272 single-stranded DNA binding TraI N-terminal subdomain THMIRHAM_05620 PF07057 DNA helicase TraI THMIRHAM_05620 PF18340 DNA relaxase TraI 2B/2B-like domain THMIRHAM_05640 PF00563 EAL domain THMIRHAM_05640 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_05640 PF08447 PAS fold THMIRHAM_05640 PF08448 PAS fold THMIRHAM_05650 PF02547 Queuosine biosynthesis protein THMIRHAM_05660 PF01702 Queuine tRNA-ribosyltransferase THMIRHAM_05670 PF02699 Preprotein translocase subunit THMIRHAM_05680 PF02355 Protein export membrane protein THMIRHAM_05680 PF07549 SecD/SecF GG Motif THMIRHAM_05680 PF13721 SecD export protein N-terminal TM region THMIRHAM_05690 PF02355 Protein export membrane protein THMIRHAM_05690 PF07549 SecD/SecF GG Motif THMIRHAM_05700 PF16658 Class II release factor RF3, C-terminal domain THMIRHAM_05700 PF03144 Elongation factor Tu domain 2 THMIRHAM_05700 PF00009 Elongation factor Tu GTP binding domain THMIRHAM_05710 PF05736 OprF membrane domain THMIRHAM_05710 PF00691 OmpA family THMIRHAM_05720 PF03448 MgtE intracellular N domain THMIRHAM_05720 PF01769 Divalent cation transporter THMIRHAM_05720 PF00571 CBS domain THMIRHAM_05730 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein THMIRHAM_05740 PF12399 Branched-chain amino acid ATP-binding cassette transporter THMIRHAM_05740 PF00005 ABC transporter THMIRHAM_05780 PF01699 Sodium/calcium exchanger protein THMIRHAM_05800 PF00005 ABC transporter THMIRHAM_05810 PF02405 Permease MlaE THMIRHAM_05820 PF02470 MlaD protein THMIRHAM_05850 PF00005 ABC transporter THMIRHAM_05860 PF01061 ABC-2 type transporter THMIRHAM_05880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THMIRHAM_05890 PF01634 ATP phosphoribosyltransferase THMIRHAM_05900 PF00815 Histidinol dehydrogenase THMIRHAM_05910 PF01784 NIF3 (NGG1p interacting factor 3) THMIRHAM_05920 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal THMIRHAM_05920 PF00355 Rieske [2Fe-2S] domain THMIRHAM_05930 PF00033 Cytochrome b/b6/petB THMIRHAM_05930 PF00032 Cytochrome b(C-terminal)/b6/petD THMIRHAM_05940 PF02167 Cytochrome C1 family THMIRHAM_05950 PF18073 Rubredoxin metal binding domain THMIRHAM_05960 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) THMIRHAM_05970 PF00072 Response regulator receiver domain THMIRHAM_05970 PF00989 PAS fold THMIRHAM_05970 PF01627 Hpt domain THMIRHAM_05970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_05970 PF18415 Histidine kinase receptor ArcB trans-membrane domain THMIRHAM_05970 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_05980 PF00459 Inositol monophosphatase family THMIRHAM_05990 PF00571 CBS domain THMIRHAM_05990 PF03471 Transporter associated domain THMIRHAM_05990 PF01595 Cyclin M transmembrane N-terminal domain THMIRHAM_06010 PF00448 SRP54-type protein, GTPase domain THMIRHAM_06010 PF02881 SRP54-type protein, helical bundle domain THMIRHAM_06010 PF02978 Signal peptide binding domain THMIRHAM_06020 PF00886 Ribosomal protein S16 THMIRHAM_06030 PF05239 PRC-barrel domain THMIRHAM_06030 PF01782 RimM N-terminal domain THMIRHAM_06040 PF01746 tRNA (Guanine-1)-methyltransferase THMIRHAM_06050 PF01245 Ribosomal protein L19 THMIRHAM_06060 PF02899 Phage integrase, N-terminal SAM-like domain THMIRHAM_06060 PF00589 Phage integrase family THMIRHAM_06070 PF10411 Disulfide bond isomerase protein N-terminus THMIRHAM_06070 PF13098 Thioredoxin-like domain THMIRHAM_06100 PF08239 Bacterial SH3 domain THMIRHAM_06110 PF08264 Anticodon-binding domain of tRNA THMIRHAM_06110 PF00133 tRNA synthetases class I (I, L, M and V) THMIRHAM_06110 PF10458 Valyl tRNA synthetase tRNA binding arm THMIRHAM_06120 PF00669 Bacterial flagellin N-terminal helical region THMIRHAM_06120 PF00700 Bacterial flagellin C-terminal helical region THMIRHAM_06150 PF00909 Ammonium Transporter Family THMIRHAM_06160 PF00543 Nitrogen regulatory protein P-II THMIRHAM_06190 PF03710 Glutamate-ammonia ligase adenylyltransferase THMIRHAM_06190 PF08335 GlnD PII-uridylyltransferase THMIRHAM_06200 PF03951 Glutamine synthetase, beta-Grasp domain THMIRHAM_06200 PF00120 Glutamine synthetase, catalytic domain THMIRHAM_06210 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_06220 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_06230 PF00005 ABC transporter THMIRHAM_06240 PF01895 PhoU domain THMIRHAM_06250 PF00072 Response regulator receiver domain THMIRHAM_06250 PF00486 Transcriptional regulatory protein, C terminal THMIRHAM_06260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_06260 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_06260 PF11808 Phosphate regulon sensor protein PhoR THMIRHAM_06260 PF00989 PAS fold THMIRHAM_06270 PF01384 Phosphate transporter family THMIRHAM_06280 PF12849 PBP superfamily domain THMIRHAM_06290 PF00111 2Fe-2S iron-sulfur cluster binding domain THMIRHAM_06330 PF01722 BolA-like protein THMIRHAM_06350 PF00149 Calcineurin-like phosphoesterase THMIRHAM_06360 PF00398 Ribosomal RNA adenine dimethylase THMIRHAM_06370 PF04166 Pyridoxal phosphate biosynthetic protein PdxA THMIRHAM_06380 PF00639 PPIC-type PPIASE domain THMIRHAM_06380 PF09312 SurA N-terminal domain THMIRHAM_06390 PF04453 LPS transport system D THMIRHAM_06390 PF03968 OstA-like protein THMIRHAM_06400 PF01636 Phosphotransferase enzyme family THMIRHAM_06410 PF00483 Nucleotidyl transferase THMIRHAM_06420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_06420 PF08447 PAS fold THMIRHAM_06430 PF00849 RNA pseudouridylate synthase THMIRHAM_06430 PF01479 S4 domain THMIRHAM_06450 PF00313 'Cold-shock' DNA-binding domain THMIRHAM_06470 PF01758 Sodium Bile acid symporter family THMIRHAM_06480 PF03883 Peroxide stress protein YaaA THMIRHAM_06510 PF01430 Hsp33 protein THMIRHAM_06520 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family THMIRHAM_06520 PF04055 Radical SAM superfamily THMIRHAM_06530 PF03099 Biotin/lipoate A/B protein ligase family THMIRHAM_06540 PF04359 Protein of unknown function (DUF493) THMIRHAM_06550 PF01063 Amino-transferase class IV THMIRHAM_06560 PF07943 Penicillin-binding protein 5, C-terminal domain THMIRHAM_06560 PF00768 D-alanyl-D-alanine carboxypeptidase THMIRHAM_06570 PF01098 Cell cycle protein THMIRHAM_06580 PF00905 Penicillin binding protein transpeptidase domain THMIRHAM_06580 PF03717 Penicillin-binding Protein dimerisation domain THMIRHAM_06600 PF04085 rod shape-determining protein MreC THMIRHAM_06620 PF02686 Glu-tRNAGln amidotransferase C subunit THMIRHAM_06630 PF01425 Amidase THMIRHAM_06640 PF02934 GatB/GatE catalytic domain THMIRHAM_06640 PF02637 GatB domain THMIRHAM_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_06670 PF00072 Response regulator receiver domain THMIRHAM_06670 PF01627 Hpt domain THMIRHAM_06670 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_06670 PF00672 HAMP domain THMIRHAM_06670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THMIRHAM_06680 PF00072 Response regulator receiver domain THMIRHAM_06690 PF01435 Peptidase family M48 THMIRHAM_06710 PF00291 Pyridoxal-phosphate dependent enzyme THMIRHAM_06720 PF02657 Fe-S metabolism associated domain THMIRHAM_06740 PF02472 Biopolymer transport protein ExbD/TolR THMIRHAM_06750 PF01618 MotA/TolQ/ExbB proton channel family THMIRHAM_06800 PF00571 CBS domain THMIRHAM_06800 PF00478 IMP dehydrogenase / GMP reductase domain THMIRHAM_06810 PF00117 Glutamine amidotransferase class-I THMIRHAM_06810 PF02540 NAD synthase THMIRHAM_06810 PF00958 GMP synthase C terminal domain THMIRHAM_06820 PF14437 MafB19-like deaminase THMIRHAM_06830 PF03975 CheD chemotactic sensory transduction THMIRHAM_06840 PF01584 CheW-like domain THMIRHAM_06840 PF02895 Signal transducing histidine kinase, homodimeric domain THMIRHAM_06840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_06840 PF01627 Hpt domain THMIRHAM_06880 PF00183 Hsp90 protein THMIRHAM_06890 PF00005 ABC transporter THMIRHAM_06890 PF12848 ABC transporter THMIRHAM_06950 PF00795 Carbon-nitrogen hydrolase THMIRHAM_06970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THMIRHAM_06970 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase THMIRHAM_07030 PF01624 MutS domain I THMIRHAM_07030 PF05188 MutS domain II THMIRHAM_07030 PF05192 MutS domain III THMIRHAM_07030 PF05190 MutS family domain IV THMIRHAM_07030 PF00488 MutS domain V THMIRHAM_07040 PF02464 Competence-damaged protein THMIRHAM_07050 PF00154 recA bacterial DNA recombination protein THMIRHAM_07070 PF02272 DHHA1 domain THMIRHAM_07070 PF01411 tRNA synthetases class II (A) THMIRHAM_07070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THMIRHAM_07080 PF13840 ACT domain THMIRHAM_07080 PF00696 Amino acid kinase family THMIRHAM_07080 PF01842 ACT domain THMIRHAM_07100 PF02599 Global regulator protein family THMIRHAM_07120 PF00579 tRNA synthetases class I (W and Y) THMIRHAM_07170 PF12627 Probable RNA and SrmB- binding site of polymerase A THMIRHAM_07170 PF12626 Polymerase A arginine-rich C-terminus THMIRHAM_07170 PF01743 Poly A polymerase head domain THMIRHAM_07180 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THMIRHAM_07190 PF02548 Ketopantoate hydroxymethyltransferase THMIRHAM_07200 PF02569 Pantoate-beta-alanine ligase THMIRHAM_07210 PF01618 MotA/TolQ/ExbB proton channel family THMIRHAM_07220 PF00691 OmpA family THMIRHAM_07220 PF13677 Membrane MotB of proton-channel complex MotA/MotB THMIRHAM_07230 PF02261 Aspartate decarboxylase THMIRHAM_07240 PF00311 Phosphoenolpyruvate carboxylase THMIRHAM_07250 PF00719 Inorganic pyrophosphatase THMIRHAM_07260 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain THMIRHAM_07270 PF02568 Thiamine biosynthesis protein (ThiI) THMIRHAM_07270 PF02926 THUMP domain THMIRHAM_07280 PF00497 Bacterial extracellular solute-binding proteins, family 3 THMIRHAM_07280 PF01464 Transglycosylase SLT domain THMIRHAM_07290 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_07290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THMIRHAM_07300 PF17876 Cold shock domain THMIRHAM_07300 PF08461 Ribonuclease R winged-helix domain THMIRHAM_07300 PF08206 Ribonuclease B OB domain THMIRHAM_07300 PF00773 RNB domain THMIRHAM_07300 PF00575 S1 RNA binding domain THMIRHAM_07310 PF00588 SpoU rRNA Methylase family THMIRHAM_07310 PF08032 RNA 2'-O ribose methyltransferase substrate binding THMIRHAM_07320 PF00294 pfkB family carbohydrate kinase THMIRHAM_07330 PF00027 Cyclic nucleotide-binding domain THMIRHAM_07330 PF13545 Crp-like helix-turn-helix domain THMIRHAM_07340 PF00691 OmpA family THMIRHAM_07350 PF01433 Peptidase family M1 domain THMIRHAM_07350 PF11940 Domain of unknown function (DUF3458) Ig-like fold THMIRHAM_07350 PF17432 Domain of unknown function (DUF3458_C) ARM repeats THMIRHAM_07450 PF01584 CheW-like domain THMIRHAM_07450 PF00072 Response regulator receiver domain THMIRHAM_07470 PF00460 Flagella basal body rod protein THMIRHAM_07480 PF00460 Flagella basal body rod protein THMIRHAM_07480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMIRHAM_07490 PF03963 Flagellar hook capping protein - N-terminal region THMIRHAM_07500 PF07559 Flagellar basal body protein FlaE THMIRHAM_07500 PF00460 Flagella basal body rod protein THMIRHAM_07500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMIRHAM_07510 PF00460 Flagella basal body rod protein THMIRHAM_07510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMIRHAM_07520 PF00460 Flagella basal body rod protein THMIRHAM_07520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THMIRHAM_07530 PF02107 Flagellar L-ring protein THMIRHAM_07550 PF02119 Flagellar P-ring protein THMIRHAM_07580 PF00700 Bacterial flagellin C-terminal helical region THMIRHAM_07580 PF00669 Bacterial flagellin N-terminal helical region THMIRHAM_07590 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain THMIRHAM_07590 PF01464 Transglycosylase SLT domain THMIRHAM_07620 PF00700 Bacterial flagellin C-terminal helical region THMIRHAM_07620 PF00669 Bacterial flagellin N-terminal helical region THMIRHAM_07630 PF00700 Bacterial flagellin C-terminal helical region THMIRHAM_07630 PF00669 Bacterial flagellin N-terminal helical region THMIRHAM_07660 PF07196 Flagellin hook IN motif THMIRHAM_07660 PF07195 Flagellar hook-associated protein 2 C-terminus THMIRHAM_07660 PF02465 Flagellar hook-associated protein 2 N-terminus THMIRHAM_07670 PF02561 Flagellar protein FliS THMIRHAM_07690 PF00158 Sigma-54 interaction domain THMIRHAM_07690 PF02954 Bacterial regulatory protein, Fis family THMIRHAM_07690 PF06490 Flagellar regulatory protein FleQ THMIRHAM_07700 PF13188 PAS domain THMIRHAM_07700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_07700 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_07710 PF02954 Bacterial regulatory protein, Fis family THMIRHAM_07710 PF00072 Response regulator receiver domain THMIRHAM_07710 PF00158 Sigma-54 interaction domain THMIRHAM_07720 PF02049 Flagellar hook-basal body complex protein FliE THMIRHAM_07730 PF01514 Secretory protein of YscJ/FliF family THMIRHAM_07730 PF08345 Flagellar M-ring protein C-terminal THMIRHAM_07740 PF01706 FliG C-terminal domain THMIRHAM_07740 PF14841 FliG middle domain THMIRHAM_07740 PF14842 FliG N-terminal domain THMIRHAM_07760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMIRHAM_07760 PF18269 T3SS EscN ATPase C-terminal domain THMIRHAM_07790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_07790 PF00672 HAMP domain THMIRHAM_07800 PF01618 MotA/TolQ/ExbB proton channel family THMIRHAM_07810 PF13677 Membrane MotB of proton-channel complex MotA/MotB THMIRHAM_07810 PF00691 OmpA family THMIRHAM_07830 PF02154 Flagellar motor switch protein FliM THMIRHAM_07830 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THMIRHAM_07840 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THMIRHAM_07850 PF04347 Flagellar biosynthesis protein, FliO THMIRHAM_07860 PF00813 FliP family THMIRHAM_07870 PF01313 Bacterial export proteins, family 3 THMIRHAM_07880 PF01311 Bacterial export proteins, family 1 THMIRHAM_07890 PF01312 FlhB HrpN YscU SpaS Family THMIRHAM_07900 PF00771 FHIPEP family THMIRHAM_07910 PF00448 SRP54-type protein, GTPase domain THMIRHAM_07920 PF10609 NUBPL iron-transfer P-loop NTPase THMIRHAM_07930 PF04542 Sigma-70 region 2 THMIRHAM_07930 PF04539 Sigma-70 region 3 THMIRHAM_07930 PF04545 Sigma-70, region 4 THMIRHAM_07940 PF00072 Response regulator receiver domain THMIRHAM_07950 PF04344 Chemotaxis phosphatase, CheZ THMIRHAM_07960 PF01584 CheW-like domain THMIRHAM_07960 PF02895 Signal transducing histidine kinase, homodimeric domain THMIRHAM_07960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_07960 PF00072 Response regulator receiver domain THMIRHAM_07960 PF01627 Hpt domain THMIRHAM_07970 PF01584 CheW-like domain THMIRHAM_07980 PF01312 FlhB HrpN YscU SpaS Family THMIRHAM_08000 PF00072 Response regulator receiver domain THMIRHAM_08010 PF01584 CheW-like domain THMIRHAM_08030 PF01739 CheR methyltransferase, SAM binding domain THMIRHAM_08030 PF03705 CheR methyltransferase, all-alpha domain THMIRHAM_08040 PF01339 CheB methylesterase THMIRHAM_08040 PF00072 Response regulator receiver domain THMIRHAM_08050 PF02743 Cache domain THMIRHAM_08050 PF00672 HAMP domain THMIRHAM_08050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_08070 PF01784 NIF3 (NGG1p interacting factor 3) THMIRHAM_08080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase THMIRHAM_08080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THMIRHAM_08090 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_08100 PF09397 Ftsk gamma domain THMIRHAM_08100 PF01580 FtsK/SpoIIIE family THMIRHAM_08100 PF17854 FtsK alpha domain THMIRHAM_08100 PF13491 4TM region of DNA translocase FtsK/SpoIIIE THMIRHAM_08110 PF03548 Outer membrane lipoprotein carrier protein LolA THMIRHAM_08120 PF00004 ATPase family associated with various cellular activities (AAA) THMIRHAM_08120 PF16193 AAA C-terminal domain THMIRHAM_08120 PF12002 MgsA AAA+ ATPase C terminal THMIRHAM_08130 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THMIRHAM_08140 PF01571 Aminomethyltransferase folate-binding domain THMIRHAM_08140 PF08669 Glycine cleavage T-protein C-terminal barrel domain THMIRHAM_08150 PF01597 Glycine cleavage H-protein THMIRHAM_08160 PF02347 Glycine cleavage system P-protein THMIRHAM_08180 PF02403 Seryl-tRNA synthetase N-terminal domain THMIRHAM_08180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THMIRHAM_08200 PF08918 PhoQ Sensor THMIRHAM_08200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_08210 PF00072 Response regulator receiver domain THMIRHAM_08220 PF04314 Copper chaperone PCu(A)C THMIRHAM_08260 PF02514 CobN/Magnesium Chelatase THMIRHAM_08260 PF11965 Domain of unknown function (DUF3479) THMIRHAM_08270 PF07715 TonB-dependent Receptor Plug Domain THMIRHAM_08270 PF00593 TonB dependent receptor THMIRHAM_08300 PF00849 RNA pseudouridylate synthase THMIRHAM_08310 PF01451 Low molecular weight phosphotyrosine protein phosphatase THMIRHAM_08320 PF00575 S1 RNA binding domain THMIRHAM_08320 PF12111 Polyribonucleotide phosphorylase C terminal THMIRHAM_08320 PF10150 Ribonuclease E/G family THMIRHAM_08330 PF01479 S4 domain THMIRHAM_08330 PF00849 RNA pseudouridylate synthase THMIRHAM_08340 PF13419 Haloacid dehalogenase-like hydrolase THMIRHAM_08350 PF02545 Maf-like protein THMIRHAM_08370 PF01783 Ribosomal L32p protein family THMIRHAM_08380 PF02504 Fatty acid synthesis protein THMIRHAM_08390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III THMIRHAM_08390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal THMIRHAM_08400 PF00698 Acyl transferase domain THMIRHAM_08420 PF00550 Phosphopantetheine attachment site THMIRHAM_08430 PF02801 Beta-ketoacyl synthase, C-terminal domain THMIRHAM_08430 PF00109 Beta-ketoacyl synthase, N-terminal domain THMIRHAM_08440 PF00425 chorismate binding enzyme THMIRHAM_08440 PF04715 Anthranilate synthase component I, N terminal region THMIRHAM_08460 PF02618 YceG-like family THMIRHAM_08470 PF02223 Thymidylate kinase THMIRHAM_08480 PF12169 DNA polymerase III subunits gamma and tau domain III THMIRHAM_08490 PF01026 TatD related DNase THMIRHAM_08500 PF00664 ABC transporter transmembrane region THMIRHAM_08500 PF00005 ABC transporter THMIRHAM_08510 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain THMIRHAM_08510 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THMIRHAM_08520 PF00497 Bacterial extracellular solute-binding proteins, family 3 THMIRHAM_08540 PF00753 Metallo-beta-lactamase superfamily THMIRHAM_08570 PF01425 Amidase THMIRHAM_08580 PF00289 Biotin carboxylase, N-terminal domain THMIRHAM_08580 PF02785 Biotin carboxylase C-terminal domain THMIRHAM_08580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THMIRHAM_08590 PF09347 Domain of unknown function (DUF1989) THMIRHAM_08610 PF01402 Ribbon-helix-helix protein, copG family THMIRHAM_08610 PF08753 NikR C terminal nickel binding domain THMIRHAM_08620 PF00005 ABC transporter THMIRHAM_08630 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_08640 PF02237 Biotin protein ligase C terminal domain THMIRHAM_08640 PF03099 Biotin/lipoate A/B protein ligase family THMIRHAM_08640 PF08279 HTH domain THMIRHAM_08650 PF08482 ATP-dependent helicase C-terminal THMIRHAM_08650 PF00270 DEAD/DEAH box helicase THMIRHAM_08650 PF04408 Helicase associated domain (HA2) THMIRHAM_08650 PF00271 Helicase conserved C-terminal domain THMIRHAM_08660 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain THMIRHAM_08660 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THMIRHAM_08680 PF13333 Integrase core domain THMIRHAM_08680 PF13276 HTH-like domain THMIRHAM_08680 PF00665 Integrase core domain THMIRHAM_08700 PF00578 AhpC/TSA family THMIRHAM_08720 PF00563 EAL domain THMIRHAM_08720 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_08720 PF08448 PAS fold THMIRHAM_08740 PF00550 Phosphopantetheine attachment site THMIRHAM_08750 PF00501 AMP-binding enzyme THMIRHAM_08750 PF13193 AMP-binding enzyme C-terminal domain THMIRHAM_08760 PF07977 FabA-like domain THMIRHAM_08800 PF00535 Glycosyl transferase family 2 THMIRHAM_08860 PF00109 Beta-ketoacyl synthase, N-terminal domain THMIRHAM_08860 PF02801 Beta-ketoacyl synthase, C-terminal domain THMIRHAM_08910 PF01668 SmpB protein THMIRHAM_08930 PF03364 Polyketide cyclase / dehydrase and lipid transport THMIRHAM_08940 PF03658 RnfH family Ubiquitin THMIRHAM_08960 PF01475 Ferric uptake regulator family THMIRHAM_08970 PF02463 RecF/RecN/SMC N terminal domain THMIRHAM_08980 PF01513 ATP-NAD kinase THMIRHAM_08990 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding THMIRHAM_08990 PF01628 HrcA protein C terminal domain THMIRHAM_09000 PF01025 GrpE THMIRHAM_09010 PF00012 Hsp70 protein THMIRHAM_09020 PF00226 DnaJ domain THMIRHAM_09020 PF01556 DnaJ C terminal domain THMIRHAM_09020 PF00684 DnaJ central domain THMIRHAM_09030 PF05173 Dihydrodipicolinate reductase, C-terminus THMIRHAM_09030 PF01113 Dihydrodipicolinate reductase, N-terminus THMIRHAM_09040 PF00877 NlpC/P60 family THMIRHAM_09060 PF01875 Memo-like protein THMIRHAM_09080 PF00117 Glutamine amidotransferase class-I THMIRHAM_09080 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain THMIRHAM_09090 PF02142 MGS-like domain THMIRHAM_09090 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain THMIRHAM_09090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THMIRHAM_09100 PF01272 Transcription elongation factor, GreA/GreB, C-term THMIRHAM_09100 PF03449 Transcription elongation factor, N-terminal THMIRHAM_09130 PF04305 Protein of unknown function (DUF455) THMIRHAM_09140 PF13649 Methyltransferase domain THMIRHAM_09150 PF00480 ROK family THMIRHAM_09170 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 THMIRHAM_09180 PF00271 Helicase conserved C-terminal domain THMIRHAM_09180 PF00270 DEAD/DEAH box helicase THMIRHAM_09200 PF00106 short chain dehydrogenase THMIRHAM_09210 PF00085 Thioredoxin THMIRHAM_09220 PF10415 Fumarase C C-terminus THMIRHAM_09220 PF00206 Lyase THMIRHAM_09230 PF01627 Hpt domain THMIRHAM_09230 PF00989 PAS fold THMIRHAM_09230 PF00072 Response regulator receiver domain THMIRHAM_09230 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_09230 PF18415 Histidine kinase receptor ArcB trans-membrane domain THMIRHAM_09240 PF00196 Bacterial regulatory proteins, luxR family THMIRHAM_09240 PF00072 Response regulator receiver domain THMIRHAM_09260 PF03462 PCRF domain THMIRHAM_09260 PF00472 RF-1 domain THMIRHAM_09270 PF00152 tRNA synthetases class II (D, K and N) THMIRHAM_09270 PF01336 OB-fold nucleic acid binding domain THMIRHAM_09290 PF01527 Transposase THMIRHAM_09300 PF02661 Fic/DOC family THMIRHAM_09310 PF01571 Aminomethyltransferase folate-binding domain THMIRHAM_09320 PF01584 CheW-like domain THMIRHAM_09330 PF01242 6-pyruvoyl tetrahydropterin synthase THMIRHAM_09340 PF00348 Polyprenyl synthetase THMIRHAM_09350 PF10417 C-terminal domain of 1-Cys peroxiredoxin THMIRHAM_09350 PF00578 AhpC/TSA family THMIRHAM_09370 PF00890 FAD binding domain THMIRHAM_09370 PF02910 Fumarate reductase flavoprotein C-term THMIRHAM_09390 PF13180 PDZ domain THMIRHAM_09400 PF00009 Elongation factor Tu GTP binding domain THMIRHAM_09400 PF06421 GTP-binding protein LepA C-terminus THMIRHAM_09400 PF00679 Elongation factor G C-terminus THMIRHAM_09400 PF03144 Elongation factor Tu domain 2 THMIRHAM_09410 PF10502 Signal peptidase, peptidase S26 THMIRHAM_09420 PF14622 Ribonuclease-III-like THMIRHAM_09420 PF00035 Double-stranded RNA binding motif THMIRHAM_09430 PF07650 KH domain THMIRHAM_09430 PF01926 50S ribosome-binding GTPase THMIRHAM_09440 PF02565 Recombination protein O C terminal THMIRHAM_09440 PF11967 Recombination protein O N terminal THMIRHAM_09450 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ THMIRHAM_09460 PF01648 4'-phosphopantetheinyl transferase superfamily THMIRHAM_09480 PF01758 Sodium Bile acid symporter family THMIRHAM_09500 PF04143 Sulphur transport THMIRHAM_09540 PF00005 ABC transporter THMIRHAM_09570 PF13472 GDSL-like Lipase/Acylhydrolase family THMIRHAM_09580 PF01272 Transcription elongation factor, GreA/GreB, C-term THMIRHAM_09580 PF03449 Transcription elongation factor, N-terminal THMIRHAM_09630 PF00909 Ammonium Transporter Family THMIRHAM_09640 PF05362 Lon protease (S16) C-terminal proteolytic domain THMIRHAM_09640 PF13654 AAA domain THMIRHAM_09650 PF00665 Integrase core domain THMIRHAM_09650 PF13333 Integrase core domain THMIRHAM_09650 PF13276 HTH-like domain THMIRHAM_09690 PF00753 Metallo-beta-lactamase superfamily THMIRHAM_09690 PF13567 Domain of unknown function (DUF4131) THMIRHAM_09690 PF03772 Competence protein THMIRHAM_09700 PF02606 Tetraacyldisaccharide-1-P 4'-kinase THMIRHAM_09710 PF03966 Trm112p-like protein THMIRHAM_09720 PF02348 Cytidylyltransferase THMIRHAM_09740 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase THMIRHAM_09750 PF02277 Phosphoribosyltransferase THMIRHAM_09770 PF02654 Cobalamin-5-phosphate synthase THMIRHAM_09780 PF01497 Periplasmic binding protein THMIRHAM_09790 PF03186 CobD/Cbib protein THMIRHAM_09800 PF00155 Aminotransferase class I and II THMIRHAM_09800 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THMIRHAM_09800 PF07685 CobB/CobQ-like glutamine amidotransferase domain THMIRHAM_09810 PF12557 Cob(I)alamin adenosyltransferase N terminal THMIRHAM_09810 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP THMIRHAM_09830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THMIRHAM_09830 PF07685 CobB/CobQ-like glutamine amidotransferase domain THMIRHAM_09840 PF07715 TonB-dependent Receptor Plug Domain THMIRHAM_09840 PF00593 TonB dependent receptor THMIRHAM_09880 PF00892 EamA-like transporter family THMIRHAM_09910 PF00749 tRNA synthetases class I (E and Q), catalytic domain THMIRHAM_09910 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain THMIRHAM_09930 PF03880 DbpA RNA binding domain THMIRHAM_09930 PF00270 DEAD/DEAH box helicase THMIRHAM_09930 PF00271 Helicase conserved C-terminal domain THMIRHAM_09940 PF13276 HTH-like domain THMIRHAM_09940 PF00665 Integrase core domain THMIRHAM_09940 PF13333 Integrase core domain THMIRHAM_09960 PF00578 AhpC/TSA family THMIRHAM_09970 PF00672 HAMP domain THMIRHAM_09970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_09970 PF18698 Histidine kinase sensor domain THMIRHAM_09970 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_09970 PF00989 PAS fold THMIRHAM_09980 PF00072 Response regulator receiver domain THMIRHAM_09990 PF00075 RNase H THMIRHAM_10020 PF00633 Helix-hairpin-helix motif THMIRHAM_10020 PF00730 HhH-GPD superfamily base excision DNA repair protein THMIRHAM_10020 PF10576 Iron-sulfur binding domain of endonuclease III THMIRHAM_10030 PF02508 Rnf-Nqr subunit, membrane protein THMIRHAM_10040 PF04205 FMN-binding domain THMIRHAM_10050 PF03116 NQR2, RnfD, RnfE family THMIRHAM_10060 PF13375 RnfC Barrel sandwich hybrid domain THMIRHAM_10060 PF10531 SLBB domain THMIRHAM_10060 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THMIRHAM_10060 PF12838 4Fe-4S dicluster domain THMIRHAM_10070 PF04060 Putative Fe-S cluster THMIRHAM_10080 PF02508 Rnf-Nqr subunit, membrane protein THMIRHAM_10090 PF09334 tRNA synthetases class I (M) THMIRHAM_10090 PF01588 Putative tRNA binding domain THMIRHAM_10100 PF13466 STAS domain THMIRHAM_10110 PF10609 NUBPL iron-transfer P-loop NTPase THMIRHAM_10120 PF08676 MutL C terminal dimerisation domain THMIRHAM_10120 PF01119 DNA mismatch repair protein, C-terminal domain THMIRHAM_10140 PF17209 Hfq protein THMIRHAM_10150 PF16360 GTP-binding GTPase Middle Region THMIRHAM_10150 PF13167 GTP-binding GTPase N-terminal THMIRHAM_10150 PF01926 50S ribosome-binding GTPase THMIRHAM_10160 PF01145 SPFH domain / Band 7 family THMIRHAM_10170 PF01145 SPFH domain / Band 7 family THMIRHAM_10180 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) THMIRHAM_10190 PF13393 Histidyl-tRNA synthetase THMIRHAM_10200 PF00709 Adenylosuccinate synthetase THMIRHAM_10210 PF00072 Response regulator receiver domain THMIRHAM_10220 PF13145 PPIC-type PPIASE domain THMIRHAM_10240 PF04356 Protein of unknown function (DUF489) THMIRHAM_10260 PF00849 RNA pseudouridylate synthase THMIRHAM_10270 PF03971 Monomeric isocitrate dehydrogenase THMIRHAM_10350 PF00271 Helicase conserved C-terminal domain THMIRHAM_10350 PF00270 DEAD/DEAH box helicase THMIRHAM_10360 PF11953 Domain of unknown function (DUF3470) THMIRHAM_10360 PF00037 4Fe-4S binding domain THMIRHAM_10390 PF06167 Glucose-regulated metallo-peptidase M90 THMIRHAM_10410 PF00075 RNase H THMIRHAM_10420 PF00586 AIR synthase related protein, N-terminal domain THMIRHAM_10420 PF02769 AIR synthase related protein, C-terminal domain THMIRHAM_10440 PF07152 YaeQ protein THMIRHAM_10450 PF01709 Transcriptional regulator THMIRHAM_10480 PF03831 PhnA domain THMIRHAM_10480 PF08274 PhnA Zinc-Ribbon THMIRHAM_10490 PF00226 DnaJ domain THMIRHAM_10490 PF01556 DnaJ C terminal domain THMIRHAM_10500 PF02617 ATP-dependent Clp protease adaptor protein ClpS THMIRHAM_10510 PF10431 C-terminal, D2-small domain, of ClpB protein THMIRHAM_10510 PF02861 Clp amino terminal domain, pathogenicity island component THMIRHAM_10510 PF17871 AAA lid domain THMIRHAM_10510 PF00004 ATPase family associated with various cellular activities (AAA) THMIRHAM_10510 PF07724 AAA domain (Cdc48 subfamily) THMIRHAM_10520 PF01176 Translation initiation factor 1A / IF-1 THMIRHAM_10540 PF13085 2Fe-2S iron-sulfur cluster binding domain THMIRHAM_10550 PF02910 Fumarate reductase flavoprotein C-term THMIRHAM_10550 PF00890 FAD binding domain THMIRHAM_10580 PF03588 Leucyl/phenylalanyl-tRNA protein transferase THMIRHAM_10590 PF07733 Bacterial DNA polymerase III alpha NTPase domain THMIRHAM_10590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THMIRHAM_10590 PF14579 Helix-hairpin-helix motif THMIRHAM_10590 PF02811 PHP domain THMIRHAM_10590 PF01336 OB-fold nucleic acid binding domain THMIRHAM_10620 PF00881 Nitroreductase family THMIRHAM_10640 PF16177 Acetyl-coenzyme A synthetase N-terminus THMIRHAM_10640 PF00501 AMP-binding enzyme THMIRHAM_10640 PF13193 AMP-binding enzyme C-terminal domain THMIRHAM_10650 PF04341 Protein of unknown function, DUF485 THMIRHAM_10660 PF00474 Sodium:solute symporter family THMIRHAM_10680 PF14480 DNA polymerase III polC-type N-terminus I THMIRHAM_10680 PF11490 DNA polymerase III polC-type N-terminus II THMIRHAM_10680 PF07733 Bacterial DNA polymerase III alpha NTPase domain THMIRHAM_10680 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THMIRHAM_10680 PF14579 Helix-hairpin-helix motif THMIRHAM_10680 PF02811 PHP domain THMIRHAM_10680 PF00929 Exonuclease THMIRHAM_10690 PF02576 RimP N-terminal domain THMIRHAM_10690 PF17384 RimP C-terminal SH3 domain THMIRHAM_10700 PF13184 NusA-like KH domain THMIRHAM_10700 PF08529 NusA N-terminal domain THMIRHAM_10710 PF04760 Translation initiation factor IF-2, N-terminal region THMIRHAM_10710 PF08364 Bacterial translation initiation factor IF-2 associated region THMIRHAM_10710 PF00009 Elongation factor Tu GTP binding domain THMIRHAM_10710 PF11987 Translation-initiation factor 2 THMIRHAM_10720 PF02033 Ribosome-binding factor A THMIRHAM_10730 PF16198 tRNA pseudouridylate synthase B C-terminal domain THMIRHAM_10730 PF09157 Pseudouridine synthase II TruB, C-terminal THMIRHAM_10730 PF01509 TruB family pseudouridylate synthase (N terminal domain) THMIRHAM_10740 PF09313 Domain of unknown function (DUF1971) THMIRHAM_10740 PF03848 Tellurite resistance protein TehB THMIRHAM_10760 PF00312 Ribosomal protein S15 THMIRHAM_10770 PF00013 KH domain THMIRHAM_10770 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THMIRHAM_10770 PF01138 3' exoribonuclease family, domain 1 THMIRHAM_10770 PF03725 3' exoribonuclease family, domain 2 THMIRHAM_10770 PF00575 S1 RNA binding domain THMIRHAM_10780 PF08367 Peptidase M16C associated THMIRHAM_10780 PF00675 Insulinase (Peptidase family M16) THMIRHAM_10780 PF05193 Peptidase M16 inactive domain THMIRHAM_10790 PF08007 Cupin superfamily protein THMIRHAM_10800 PF08328 Adenylosuccinate lyase C-terminal THMIRHAM_10800 PF00206 Lyase THMIRHAM_10820 PF11791 Aconitate B N-terminal domain THMIRHAM_10820 PF00330 Aconitase family (aconitate hydratase) THMIRHAM_10820 PF06434 Aconitate hydratase 2 N-terminus THMIRHAM_10840 PF01343 Peptidase family S49 THMIRHAM_10850 PF01541 GIY-YIG catalytic domain THMIRHAM_10850 PF12826 Helix-hairpin-helix motif THMIRHAM_10850 PF02151 UvrB/uvrC motif THMIRHAM_10850 PF08459 UvrC Helix-hairpin-helix N-terminal THMIRHAM_10860 PF01066 CDP-alcohol phosphatidyltransferase THMIRHAM_10870 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_10870 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_10870 PF00563 EAL domain THMIRHAM_10880 PF03861 ANTAR domain THMIRHAM_10880 PF08376 Nitrate and nitrite sensing THMIRHAM_10910 PF13667 ThiC-associated domain THMIRHAM_10910 PF01964 Radical SAM ThiC family THMIRHAM_10920 PF01266 FAD dependent oxidoreductase THMIRHAM_10940 PF05690 Thiazole biosynthesis protein ThiG THMIRHAM_10960 PF00196 Bacterial regulatory proteins, luxR family THMIRHAM_10990 PF05209 Septum formation inhibitor MinC, N-terminal domain THMIRHAM_10990 PF03775 Septum formation inhibitor MinC, C-terminal domain THMIRHAM_11010 PF00271 Helicase conserved C-terminal domain THMIRHAM_11010 PF03461 TRCF domain THMIRHAM_11010 PF00270 DEAD/DEAH box helicase THMIRHAM_11010 PF02559 CarD-like/TRCF domain THMIRHAM_11010 PF17757 UvrB interaction domain THMIRHAM_11030 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_11040 PF03458 UPF0126 domain THMIRHAM_11050 PF02687 FtsX-like permease family THMIRHAM_11050 PF12704 MacB-like periplasmic core domain THMIRHAM_11060 PF00005 ABC transporter THMIRHAM_11070 PF12848 ABC transporter THMIRHAM_11070 PF00005 ABC transporter THMIRHAM_11080 PF11127 Protein of unknown function (DUF2892) THMIRHAM_11080 PF00581 Rhodanese-like domain THMIRHAM_11090 PF05697 Bacterial trigger factor protein (TF) THMIRHAM_11090 PF05698 Bacterial trigger factor protein (TF) C-terminus THMIRHAM_11090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THMIRHAM_11100 PF00574 Clp protease THMIRHAM_11110 PF07724 AAA domain (Cdc48 subfamily) THMIRHAM_11110 PF10431 C-terminal, D2-small domain, of ClpB protein THMIRHAM_11110 PF06689 ClpX C4-type zinc finger THMIRHAM_11120 PF00004 ATPase family associated with various cellular activities (AAA) THMIRHAM_11120 PF05362 Lon protease (S16) C-terminal proteolytic domain THMIRHAM_11120 PF02190 ATP-dependent protease La (LON) substrate-binding domain THMIRHAM_11130 PF00216 Bacterial DNA-binding protein THMIRHAM_11160 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_11170 PF12911 N-terminal TM domain of oligopeptide transport permease C THMIRHAM_11170 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_11180 PF00005 ABC transporter THMIRHAM_11180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THMIRHAM_11190 PF13495 Phage integrase, N-terminal SAM-like domain THMIRHAM_11190 PF00589 Phage integrase family THMIRHAM_11230 PF01653 NAD-dependent DNA ligase adenylation domain THMIRHAM_11230 PF03120 NAD-dependent DNA ligase OB-fold domain THMIRHAM_11230 PF03119 NAD-dependent DNA ligase C4 zinc finger domain THMIRHAM_11230 PF12826 Helix-hairpin-helix motif THMIRHAM_11230 PF00533 BRCA1 C Terminus (BRCT) domain THMIRHAM_11280 PF13419 Haloacid dehalogenase-like hydrolase THMIRHAM_11300 PF03989 DNA gyrase C-terminal domain, beta-propeller THMIRHAM_11300 PF00521 DNA gyrase/topoisomerase IV, subunit A THMIRHAM_11310 PF00266 Aminotransferase class-V THMIRHAM_11320 PF01842 ACT domain THMIRHAM_11320 PF01817 Chorismate mutase type II THMIRHAM_11320 PF00800 Prephenate dehydratase THMIRHAM_11330 PF00155 Aminotransferase class I and II THMIRHAM_11340 PF02153 Prephenate dehydrogenase THMIRHAM_11350 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THMIRHAM_11360 PF02224 Cytidylate kinase THMIRHAM_11370 PF00575 S1 RNA binding domain THMIRHAM_11380 PF00216 Bacterial DNA-binding protein THMIRHAM_11400 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family THMIRHAM_11410 PF01250 Ribosomal protein S6 THMIRHAM_11420 PF01084 Ribosomal protein S18 THMIRHAM_11440 PF03948 Ribosomal protein L9, C-terminal domain THMIRHAM_11440 PF01281 Ribosomal protein L9, N-terminal domain THMIRHAM_11450 PF03796 DnaB-like helicase C terminal domain THMIRHAM_11450 PF00772 DnaB-like helicase N terminal domain THMIRHAM_11460 PF00842 Alanine racemase, C-terminal domain THMIRHAM_11460 PF01168 Alanine racemase, N-terminal domain THMIRHAM_11470 PF00293 NUDIX domain THMIRHAM_11490 PF01554 MatE THMIRHAM_11530 PF00072 Response regulator receiver domain THMIRHAM_11530 PF00486 Transcriptional regulatory protein, C terminal THMIRHAM_11550 PF00309 Sigma-54 factor, Activator interacting domain (AID) THMIRHAM_11550 PF04963 Sigma-54 factor, core binding domain THMIRHAM_11550 PF04552 Sigma-54, DNA binding domain THMIRHAM_11570 PF03960 ArsC family THMIRHAM_11590 PF02601 Exonuclease VII, large subunit THMIRHAM_11590 PF13742 OB-fold nucleic acid binding domain THMIRHAM_11600 PF01207 Dihydrouridine synthase (Dus) THMIRHAM_11610 PF04607 Region found in RelA / SpoT proteins THMIRHAM_11610 PF13291 ACT domain THMIRHAM_11610 PF02824 TGS domain THMIRHAM_11620 PF00749 tRNA synthetases class I (E and Q), catalytic domain THMIRHAM_11680 PF00849 RNA pseudouridylate synthase THMIRHAM_11680 PF01479 S4 domain THMIRHAM_11690 PF02163 Peptidase family M50 THMIRHAM_11700 PF01300 Telomere recombination THMIRHAM_11710 PF02811 PHP domain THMIRHAM_11720 PF04279 Intracellular septation protein A THMIRHAM_11730 PF03795 YCII-related domain THMIRHAM_11740 PF01726 LexA DNA binding domain THMIRHAM_11740 PF00717 Peptidase S24-like THMIRHAM_11750 PF17763 Glutaminase/Asparaginase C-terminal domain THMIRHAM_11750 PF00710 Asparaginase, N-terminal THMIRHAM_11760 PF00892 EamA-like transporter family THMIRHAM_11770 PF04751 Protein of unknown function (DUF615) THMIRHAM_11780 PF00533 BRCA1 C Terminus (BRCT) domain THMIRHAM_11780 PF01653 NAD-dependent DNA ligase adenylation domain THMIRHAM_11780 PF03120 NAD-dependent DNA ligase OB-fold domain THMIRHAM_11780 PF03119 NAD-dependent DNA ligase C4 zinc finger domain THMIRHAM_11780 PF12826 Helix-hairpin-helix motif THMIRHAM_11790 PF04354 ZipA, C-terminal FtsZ-binding domain THMIRHAM_11800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THMIRHAM_11820 PF13419 Haloacid dehalogenase-like hydrolase THMIRHAM_11830 PF01258 Prokaryotic dksA/traR C4-type zinc finger THMIRHAM_11870 PF01625 Peptide methionine sulfoxide reductase THMIRHAM_11900 PF00291 Pyridoxal-phosphate dependent enzyme THMIRHAM_11920 PF03447 Homoserine dehydrogenase, NAD binding domain THMIRHAM_11920 PF01842 ACT domain THMIRHAM_11920 PF00742 Homoserine dehydrogenase THMIRHAM_11930 PF00155 Aminotransferase class I and II THMIRHAM_11940 PF04430 Protein of unknown function (DUF498/DUF598) THMIRHAM_11950 PF01476 LysM domain THMIRHAM_11950 PF01551 Peptidase family M23 THMIRHAM_11960 PF09335 SNARE associated Golgi protein THMIRHAM_11980 PF01975 Survival protein SurE THMIRHAM_11990 PF01713 Smr domain THMIRHAM_12000 PF04977 Septum formation initiator THMIRHAM_12010 PF00113 Enolase, C-terminal TIM barrel domain THMIRHAM_12010 PF03952 Enolase, N-terminal domain THMIRHAM_12020 PF00793 DAHP synthetase I family THMIRHAM_12030 PF06418 CTP synthase N-terminus THMIRHAM_12030 PF00117 Glutamine amidotransferase class-I THMIRHAM_12040 PF01171 PP-loop family THMIRHAM_12040 PF11734 TilS substrate C-terminal domain THMIRHAM_12050 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit THMIRHAM_12070 PF18381 YcaO cyclodehydratase C-terminal domain THMIRHAM_12070 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding THMIRHAM_12100 PF00582 Universal stress protein family THMIRHAM_12110 PF00814 Glycoprotease family THMIRHAM_12120 PF13307 Helicase C-terminal domain THMIRHAM_12120 PF04851 Type III restriction enzyme, res subunit THMIRHAM_12130 PF00444 Ribosomal protein L36 THMIRHAM_12140 PF01584 CheW-like domain THMIRHAM_12140 PF00072 Response regulator receiver domain THMIRHAM_12150 PF01351 Ribonuclease HII THMIRHAM_12160 PF02684 Lipid-A-disaccharide synthetase THMIRHAM_12170 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 THMIRHAM_12170 PF00132 Bacterial transferase hexapeptide (six repeats) THMIRHAM_12180 PF07977 FabA-like domain THMIRHAM_12190 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD THMIRHAM_12190 PF00132 Bacterial transferase hexapeptide (six repeats) THMIRHAM_12200 PF03938 Outer membrane protein (OmpH-like) THMIRHAM_12210 PF01103 Surface antigen THMIRHAM_12210 PF07244 Surface antigen variable number repeat THMIRHAM_12220 PF13180 PDZ domain THMIRHAM_12220 PF17820 PDZ domain THMIRHAM_12220 PF02163 Peptidase family M50 THMIRHAM_12240 PF01255 Putative undecaprenyl diphosphate synthase THMIRHAM_12250 PF01765 Ribosome recycling factor THMIRHAM_12260 PF00696 Amino acid kinase family THMIRHAM_12270 PF00889 Elongation factor TS THMIRHAM_12280 PF00318 Ribosomal protein S2 THMIRHAM_12290 PF00557 Metallopeptidase family M24 THMIRHAM_12300 PF08335 GlnD PII-uridylyltransferase THMIRHAM_12300 PF01966 HD domain THMIRHAM_12300 PF01909 Nucleotidyltransferase domain THMIRHAM_12310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily THMIRHAM_12320 PF14602 Hexapeptide repeat of succinyl-transferase THMIRHAM_12320 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle THMIRHAM_12330 PF03960 ArsC family THMIRHAM_12340 PF07687 Peptidase dimerisation domain THMIRHAM_12340 PF01546 Peptidase family M20/M25/M40 THMIRHAM_12370 PF00209 Sodium:neurotransmitter symporter family THMIRHAM_12380 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THMIRHAM_12380 PF01565 FAD binding domain THMIRHAM_12390 PF00924 Mechanosensitive ion channel THMIRHAM_12400 PF00933 Glycosyl hydrolase family 3 N terminal domain THMIRHAM_12420 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_12420 PF12911 N-terminal TM domain of oligopeptide transport permease C THMIRHAM_12430 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_12440 PF17969 L,D-transpeptidase C-terminal domain THMIRHAM_12440 PF03734 L,D-transpeptidase catalytic domain THMIRHAM_12480 PF01928 CYTH domain THMIRHAM_12490 PF00291 Pyridoxal-phosphate dependent enzyme THMIRHAM_12510 PF02203 Tar ligand binding domain homologue THMIRHAM_12510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_12510 PF00672 HAMP domain THMIRHAM_12540 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_12540 PF08448 PAS fold THMIRHAM_12550 PF12838 4Fe-4S dicluster domain THMIRHAM_12560 PF16325 Peptidase family U32 C-terminal domain THMIRHAM_12560 PF01136 Peptidase family U32 THMIRHAM_12580 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_12580 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_12580 PF00563 EAL domain THMIRHAM_12590 PF04055 Radical SAM superfamily THMIRHAM_12590 PF18693 TRAM domain THMIRHAM_12590 PF00919 Uncharacterized protein family UPF0004 THMIRHAM_12630 PF03653 Uncharacterised protein family (UPF0093) THMIRHAM_12640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THMIRHAM_12650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THMIRHAM_12660 PF10609 NUBPL iron-transfer P-loop NTPase THMIRHAM_12700 PF13247 4Fe-4S dicluster domain THMIRHAM_12710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THMIRHAM_12710 PF00384 Molybdopterin oxidoreductase THMIRHAM_12710 PF01568 Molydopterin dinucleotide binding domain THMIRHAM_12730 PF03692 Putative zinc- or iron-chelating domain THMIRHAM_12740 PF00849 RNA pseudouridylate synthase THMIRHAM_12750 PF08713 DNA alkylation repair enzyme THMIRHAM_12770 PF03466 LysR substrate binding domain THMIRHAM_12770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_12780 PF05726 Pirin C-terminal cupin domain THMIRHAM_12780 PF02678 Pirin THMIRHAM_12830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family THMIRHAM_12890 PF00669 Bacterial flagellin N-terminal helical region THMIRHAM_12890 PF00700 Bacterial flagellin C-terminal helical region THMIRHAM_12900 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus THMIRHAM_12900 PF05175 Methyltransferase small domain THMIRHAM_12920 PF00563 EAL domain THMIRHAM_12920 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_12920 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_12940 PF02386 Cation transport protein THMIRHAM_12970 PF00563 EAL domain THMIRHAM_12970 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_12970 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_12980 PF00578 AhpC/TSA family THMIRHAM_13000 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_13020 PF00072 Response regulator receiver domain THMIRHAM_13020 PF00486 Transcriptional regulatory protein, C terminal THMIRHAM_13050 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_13050 PF08448 PAS fold THMIRHAM_13060 PF00665 Integrase core domain THMIRHAM_13060 PF13333 Integrase core domain THMIRHAM_13060 PF13276 HTH-like domain THMIRHAM_13080 PF00271 Helicase conserved C-terminal domain THMIRHAM_13080 PF00270 DEAD/DEAH box helicase THMIRHAM_13090 PF12843 Putative quorum-sensing-regulated virulence factor THMIRHAM_13100 PF00375 Sodium:dicarboxylate symporter family THMIRHAM_13150 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_13150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THMIRHAM_13160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) THMIRHAM_13160 PF00364 Biotin-requiring enzyme THMIRHAM_13160 PF02817 e3 binding domain THMIRHAM_13170 PF17831 Pyruvate dehydrogenase E1 component middle domain THMIRHAM_13170 PF00456 Transketolase, thiamine diphosphate binding domain THMIRHAM_13180 PF00293 NUDIX domain THMIRHAM_13200 PF00258 Flavodoxin THMIRHAM_13230 PF01510 N-acetylmuramoyl-L-alanine amidase THMIRHAM_13240 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THMIRHAM_13240 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THMIRHAM_13250 PF02080 TrkA-C domain THMIRHAM_13250 PF02254 TrkA-N domain THMIRHAM_13250 PF00999 Sodium/hydrogen exchanger family THMIRHAM_13280 PF07556 Protein of unknown function (DUF1538) THMIRHAM_13290 PF07556 Protein of unknown function (DUF1538) THMIRHAM_13300 PF02578 Multi-copper polyphenol oxidoreductase laccase THMIRHAM_13310 PF00849 RNA pseudouridylate synthase THMIRHAM_13310 PF01479 S4 domain THMIRHAM_13320 PF13525 Outer membrane lipoprotein THMIRHAM_13330 PF00795 Carbon-nitrogen hydrolase THMIRHAM_13330 PF02540 NAD synthase THMIRHAM_13340 PF00549 CoA-ligase THMIRHAM_13340 PF02629 CoA binding domain THMIRHAM_13350 PF08442 ATP-grasp domain THMIRHAM_13350 PF00549 CoA-ligase THMIRHAM_13370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THMIRHAM_13370 PF05698 Bacterial trigger factor protein (TF) C-terminus THMIRHAM_13370 PF05697 Bacterial trigger factor protein (TF) THMIRHAM_13380 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_13380 PF17156 Gammaproteobacterial periplasmic sensor domain THMIRHAM_13430 PF09905 DNA-binding protein VF530 THMIRHAM_13470 PF00672 HAMP domain THMIRHAM_13470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_13480 PF00849 RNA pseudouridylate synthase THMIRHAM_13480 PF01479 S4 domain THMIRHAM_13500 PF00270 DEAD/DEAH box helicase THMIRHAM_13500 PF11898 Domain of unknown function (DUF3418) THMIRHAM_13500 PF04408 Helicase associated domain (HA2) THMIRHAM_13500 PF00271 Helicase conserved C-terminal domain THMIRHAM_13500 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold THMIRHAM_13510 PF04273 Putative phosphatase (DUF442) THMIRHAM_13510 PF00753 Metallo-beta-lactamase superfamily THMIRHAM_13530 PF13276 HTH-like domain THMIRHAM_13530 PF00665 Integrase core domain THMIRHAM_13530 PF13333 Integrase core domain THMIRHAM_13540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THMIRHAM_13550 PF00929 Exonuclease THMIRHAM_13560 PF00075 RNase H THMIRHAM_13570 PF08241 Methyltransferase domain THMIRHAM_13580 PF16123 Hydroxyacylglutathione hydrolase C-terminus THMIRHAM_13580 PF00753 Metallo-beta-lactamase superfamily THMIRHAM_13590 PF01464 Transglycosylase SLT domain THMIRHAM_13590 PF01476 LysM domain THMIRHAM_13600 PF14718 Soluble lytic murein transglycosylase L domain THMIRHAM_13600 PF01464 Transglycosylase SLT domain THMIRHAM_13610 PF01406 tRNA synthetases class I (C) catalytic domain THMIRHAM_13610 PF09190 DALR domain THMIRHAM_13620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THMIRHAM_13630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THMIRHAM_13640 PF00149 Calcineurin-like phosphoesterase THMIRHAM_13660 PF00375 Sodium:dicarboxylate symporter family THMIRHAM_13670 PF00581 Rhodanese-like domain THMIRHAM_13680 PF04608 Phosphatidylglycerophosphatase A THMIRHAM_13690 PF00764 Arginosuccinate synthase THMIRHAM_13710 PF02666 Phosphatidylserine decarboxylase THMIRHAM_13720 PF00543 Nitrogen regulatory protein P-II THMIRHAM_13730 PF00313 'Cold-shock' DNA-binding domain THMIRHAM_13750 PF05362 Lon protease (S16) C-terminal proteolytic domain THMIRHAM_13750 PF13654 AAA domain THMIRHAM_13770 PF00072 Response regulator receiver domain THMIRHAM_13770 PF00158 Sigma-54 interaction domain THMIRHAM_13770 PF02954 Bacterial regulatory protein, Fis family THMIRHAM_13780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_13780 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_13780 PF00989 PAS fold THMIRHAM_13790 PF02742 Iron dependent repressor, metal binding and dimerisation domain THMIRHAM_13790 PF01325 Iron dependent repressor, N-terminal DNA binding domain THMIRHAM_13830 PF06508 Queuosine biosynthesis protein QueC THMIRHAM_13850 PF00691 OmpA family THMIRHAM_13860 PF07676 WD40-like Beta Propeller Repeat THMIRHAM_13860 PF04052 TolB amino-terminal domain THMIRHAM_13880 PF02472 Biopolymer transport protein ExbD/TolR THMIRHAM_13890 PF01618 MotA/TolQ/ExbB proton channel family THMIRHAM_13900 PF05491 RuvB C-terminal winged helix domain THMIRHAM_13900 PF17864 RuvB AAA lid domain THMIRHAM_13900 PF05496 Holliday junction DNA helicase RuvB P-loop domain THMIRHAM_13910 PF07499 RuvA, C-terminal domain THMIRHAM_13910 PF01330 RuvA N terminal domain THMIRHAM_13920 PF02075 Crossover junction endodeoxyribonuclease RuvC THMIRHAM_13930 PF02445 Quinolinate synthetase A protein THMIRHAM_13940 PF00152 tRNA synthetases class II (D, K and N) THMIRHAM_13940 PF02938 GAD domain THMIRHAM_13940 PF01336 OB-fold nucleic acid binding domain THMIRHAM_13960 PF06750 Bacterial Peptidase A24 N-terminal domain THMIRHAM_13960 PF01478 Type IV leader peptidase family THMIRHAM_13980 PF00793 DAHP synthetase I family THMIRHAM_13990 PF00586 AIR synthase related protein, N-terminal domain THMIRHAM_13990 PF02769 AIR synthase related protein, C-terminal domain THMIRHAM_14000 PF01029 NusB family THMIRHAM_14010 PF00885 6,7-dimethyl-8-ribityllumazine synthase THMIRHAM_14020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THMIRHAM_14020 PF00925 GTP cyclohydrolase II THMIRHAM_14030 PF00677 Lumazine binding domain THMIRHAM_14040 PF01872 RibD C-terminal domain THMIRHAM_14040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THMIRHAM_14050 PF03477 ATP cone domain THMIRHAM_14060 PF00464 Serine hydroxymethyltransferase THMIRHAM_14070 PF00005 ABC transporter THMIRHAM_14070 PF12848 ABC transporter THMIRHAM_14110 PF00665 Integrase core domain THMIRHAM_14110 PF13276 HTH-like domain THMIRHAM_14110 PF13333 Integrase core domain THMIRHAM_14140 PF02769 AIR synthase related protein, C-terminal domain THMIRHAM_14140 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain THMIRHAM_14140 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal THMIRHAM_14160 PF00701 Dihydrodipicolinate synthetase family THMIRHAM_14170 PF00578 AhpC/TSA family THMIRHAM_14180 PF13638 PIN domain THMIRHAM_14180 PF02562 PhoH-like protein THMIRHAM_14190 PF03466 LysR substrate binding domain THMIRHAM_14190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_14200 PF02254 TrkA-N domain THMIRHAM_14200 PF07885 Ion channel THMIRHAM_14210 PF01494 FAD binding domain THMIRHAM_14220 PF01494 FAD binding domain THMIRHAM_14230 PF00557 Metallopeptidase family M24 THMIRHAM_14230 PF05195 Aminopeptidase P, N-terminal domain THMIRHAM_14240 PF03695 Uncharacterised protein family (UPF0149) THMIRHAM_14260 PF01812 5-formyltetrahydrofolate cyclo-ligase family THMIRHAM_14270 PF01520 N-acetylmuramoyl-L-alanine amidase THMIRHAM_14270 PF11741 AMIN domain THMIRHAM_14280 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE THMIRHAM_14290 PF08331 Domain of unknown function (DUF1730) THMIRHAM_14300 PF01966 HD domain THMIRHAM_14300 PF13286 Phosphohydrolase-associated domain THMIRHAM_14330 PF13617 YnbE-like lipoprotein THMIRHAM_14360 PF05922 Peptidase inhibitor I9 THMIRHAM_14360 PF00082 Subtilase family THMIRHAM_14370 PF13520 Amino acid permease THMIRHAM_14380 PF00106 short chain dehydrogenase THMIRHAM_14400 PF04073 Aminoacyl-tRNA editing domain THMIRHAM_14400 PF03129 Anticodon binding domain THMIRHAM_14400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THMIRHAM_14410 PF05139 Erythromycin esterase THMIRHAM_14410 PF00156 Phosphoribosyl transferase domain THMIRHAM_14420 PF01738 Dienelactone hydrolase family THMIRHAM_14420 PF00156 Phosphoribosyl transferase domain THMIRHAM_14430 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_14430 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_14430 PF00563 EAL domain THMIRHAM_14460 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) THMIRHAM_14470 PF01926 50S ribosome-binding GTPase THMIRHAM_14480 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ THMIRHAM_14510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THMIRHAM_14540 PF08534 Redoxin THMIRHAM_14550 PF00308 Bacterial dnaA protein THMIRHAM_14570 PF00586 AIR synthase related protein, N-terminal domain THMIRHAM_14570 PF02769 AIR synthase related protein, C-terminal domain THMIRHAM_14580 PF00551 Formyl transferase THMIRHAM_14600 PF00692 dUTPase THMIRHAM_14610 PF02951 Prokaryotic glutathione synthetase, N-terminal domain THMIRHAM_14610 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain THMIRHAM_14630 PF00472 RF-1 domain THMIRHAM_14640 PF00585 C-terminal regulatory domain of Threonine dehydratase THMIRHAM_14640 PF00291 Pyridoxal-phosphate dependent enzyme THMIRHAM_14660 PF02630 SCO1/SenC THMIRHAM_14690 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) THMIRHAM_14710 PF02581 Thiamine monophosphate synthase THMIRHAM_14720 PF00202 Aminotransferase class-III THMIRHAM_14730 PF04315 Elongation factor P hydroxylase THMIRHAM_14740 PF01225 Mur ligase family, catalytic domain THMIRHAM_14740 PF02875 Mur ligase family, glutamate ligase domain THMIRHAM_14740 PF08245 Mur ligase middle domain THMIRHAM_14750 PF01612 3'-5' exonuclease THMIRHAM_14750 PF00570 HRDC domain THMIRHAM_14760 PF00365 Phosphofructokinase THMIRHAM_14770 PF00563 EAL domain THMIRHAM_14770 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_14770 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_14820 PF00691 OmpA family THMIRHAM_14830 PF00005 ABC transporter THMIRHAM_14830 PF00664 ABC transporter transmembrane region THMIRHAM_14830 PF03412 Peptidase C39 family THMIRHAM_14840 PF00529 HlyD membrane-fusion protein of T1SS THMIRHAM_14840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THMIRHAM_14850 PF00196 Bacterial regulatory proteins, luxR family THMIRHAM_14850 PF00072 Response regulator receiver domain THMIRHAM_14890 PF00361 Proton-conducting membrane transporter THMIRHAM_14900 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus THMIRHAM_14900 PF00361 Proton-conducting membrane transporter THMIRHAM_14910 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THMIRHAM_14910 PF00361 Proton-conducting membrane transporter THMIRHAM_14920 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THMIRHAM_14930 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 THMIRHAM_14940 PF12838 4Fe-4S dicluster domain THMIRHAM_14950 PF00146 NADH dehydrogenase THMIRHAM_14960 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THMIRHAM_14960 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal THMIRHAM_14960 PF00384 Molybdopterin oxidoreductase THMIRHAM_14970 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THMIRHAM_14970 PF10531 SLBB domain THMIRHAM_14970 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THMIRHAM_14990 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THMIRHAM_15000 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THMIRHAM_15010 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THMIRHAM_15020 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 THMIRHAM_15030 PF03840 Preprotein translocase SecG subunit THMIRHAM_15040 PF00121 Triosephosphate isomerase THMIRHAM_15050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THMIRHAM_15050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THMIRHAM_15050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THMIRHAM_15050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THMIRHAM_15060 PF00809 Pterin binding enzyme THMIRHAM_15070 PF00004 ATPase family associated with various cellular activities (AAA) THMIRHAM_15070 PF17862 AAA+ lid domain THMIRHAM_15070 PF06480 FtsH Extracellular THMIRHAM_15070 PF01434 Peptidase family M41 THMIRHAM_15080 PF01728 FtsJ-like methyltransferase THMIRHAM_15090 PF01985 CRS1 / YhbY (CRM) domain THMIRHAM_15100 PF01053 Cys/Met metabolism PLP-dependent enzyme THMIRHAM_15110 PF00156 Phosphoribosyl transferase domain THMIRHAM_15130 PF08245 Mur ligase middle domain THMIRHAM_15130 PF02875 Mur ligase family, glutamate ligase domain THMIRHAM_15140 PF17848 Acetyl-coA carboxylase zinc finger domain THMIRHAM_15140 PF01039 Carboxyl transferase domain THMIRHAM_15150 PF00290 Tryptophan synthase alpha chain THMIRHAM_15160 PF00291 Pyridoxal-phosphate dependent enzyme THMIRHAM_15170 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase THMIRHAM_15180 PF01416 tRNA pseudouridine synthase THMIRHAM_15190 PF01118 Semialdehyde dehydrogenase, NAD binding domain THMIRHAM_15190 PF02774 Semialdehyde dehydrogenase, dimerisation domain THMIRHAM_15220 PF00180 Isocitrate/isopropylmalate dehydrogenase THMIRHAM_15230 PF00694 Aconitase C-terminal domain THMIRHAM_15240 PF00330 Aconitase family (aconitate hydratase) THMIRHAM_15260 PF01938 TRAM domain THMIRHAM_15260 PF05958 tRNA (Uracil-5-)-methyltransferase THMIRHAM_15270 PF01297 Zinc-uptake complex component A periplasmic THMIRHAM_15280 PF00005 ABC transporter THMIRHAM_15290 PF00950 ABC 3 transport family THMIRHAM_15300 PF00950 ABC 3 transport family THMIRHAM_15330 PF00360 Phytochrome region THMIRHAM_15330 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_15330 PF01590 GAF domain THMIRHAM_15330 PF00563 EAL domain THMIRHAM_15350 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_15360 PF00916 Sulfate permease family THMIRHAM_15360 PF01740 STAS domain THMIRHAM_15370 PF06865 Pyrimidine/purine nucleoside phosphorylase THMIRHAM_15380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily THMIRHAM_15390 PF12832 MFS_1 like family THMIRHAM_15400 PF01264 Chorismate synthase THMIRHAM_15440 PF04264 YceI-like domain THMIRHAM_15450 PF01292 Prokaryotic cytochrome b561 THMIRHAM_15460 PF00194 Eukaryotic-type carbonic anhydrase THMIRHAM_15470 PF05175 Methyltransferase small domain THMIRHAM_15480 PF00994 Probable molybdopterin binding domain THMIRHAM_15490 PF05362 Lon protease (S16) C-terminal proteolytic domain THMIRHAM_15490 PF00004 ATPase family associated with various cellular activities (AAA) THMIRHAM_15490 PF02190 ATP-dependent protease La (LON) substrate-binding domain THMIRHAM_15510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_15510 PF00672 HAMP domain THMIRHAM_15510 PF02203 Tar ligand binding domain homologue THMIRHAM_15520 PF13472 GDSL-like Lipase/Acylhydrolase family THMIRHAM_15530 PF00005 ABC transporter THMIRHAM_15570 PF00216 Bacterial DNA-binding protein THMIRHAM_15580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain THMIRHAM_15580 PF01588 Putative tRNA binding domain THMIRHAM_15580 PF03147 Ferredoxin-fold anticodon binding domain THMIRHAM_15580 PF03484 tRNA synthetase B5 domain THMIRHAM_15580 PF03483 B3/4 domain THMIRHAM_15590 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain THMIRHAM_15590 PF01409 tRNA synthetases class II core domain (F) THMIRHAM_15600 PF00453 Ribosomal protein L20 THMIRHAM_15610 PF01632 Ribosomal protein L35 THMIRHAM_15620 PF00707 Translation initiation factor IF-3, C-terminal domain THMIRHAM_15620 PF05198 Translation initiation factor IF-3, N-terminal domain THMIRHAM_15630 PF02824 TGS domain THMIRHAM_15630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THMIRHAM_15630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THMIRHAM_15630 PF03129 Anticodon binding domain THMIRHAM_15750 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_15750 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THMIRHAM_15750 PF10518 TAT (twin-arginine translocation) pathway signal sequence THMIRHAM_15760 PF00034 Cytochrome c THMIRHAM_15770 PF12823 Domain of unknown function (DUF3817) THMIRHAM_15810 PF00141 Peroxidase THMIRHAM_15820 PF07690 Major Facilitator Superfamily THMIRHAM_15830 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain THMIRHAM_15830 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain THMIRHAM_15840 PF10369 Small subunit of acetolactate synthase THMIRHAM_15850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THMIRHAM_15850 PF00205 Thiamine pyrophosphate enzyme, central domain THMIRHAM_15850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THMIRHAM_15860 PF00929 Exonuclease THMIRHAM_15870 PF01435 Peptidase family M48 THMIRHAM_15880 PF01329 Pterin 4 alpha carbinolamine dehydratase THMIRHAM_15890 PF03193 RsgA GTPase THMIRHAM_15900 PF00034 Cytochrome c THMIRHAM_15910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THMIRHAM_15930 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THMIRHAM_15930 PF01926 50S ribosome-binding GTPase THMIRHAM_15940 PF01011 PQQ enzyme repeat THMIRHAM_15940 PF13360 PQQ-like domain THMIRHAM_15960 PF13393 Histidyl-tRNA synthetase THMIRHAM_15960 PF03129 Anticodon binding domain THMIRHAM_15980 PF04055 Radical SAM superfamily THMIRHAM_15990 PF00334 Nucleoside diphosphate kinase THMIRHAM_16000 PF01521 Iron-sulphur cluster biosynthesis THMIRHAM_16010 PF02082 Transcriptional regulator THMIRHAM_16020 PF00132 Bacterial transferase hexapeptide (six repeats) THMIRHAM_16030 PF00588 SpoU rRNA Methylase family THMIRHAM_16040 PF00459 Inositol monophosphatase family THMIRHAM_16050 PF00583 Acetyltransferase (GNAT) family THMIRHAM_16070 PF00682 HMGL-like THMIRHAM_16070 PF08502 LeuA allosteric (dimerisation) domain THMIRHAM_16080 PF01066 CDP-alcohol phosphatidyltransferase THMIRHAM_16090 PF13686 DsrE/DsrF/DrsH-like family THMIRHAM_16110 PF01435 Peptidase family M48 THMIRHAM_16110 PF07720 Tetratricopeptide repeat THMIRHAM_16160 PF13276 HTH-like domain THMIRHAM_16160 PF13333 Integrase core domain THMIRHAM_16160 PF00665 Integrase core domain THMIRHAM_16190 PF00920 Dehydratase family THMIRHAM_16200 PF00696 Amino acid kinase family THMIRHAM_16200 PF00583 Acetyltransferase (GNAT) family THMIRHAM_16210 PF00929 Exonuclease THMIRHAM_16220 PF00462 Glutaredoxin THMIRHAM_16230 PF00733 Asparagine synthase THMIRHAM_16230 PF13537 Glutamine amidotransferase domain THMIRHAM_16250 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_16250 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_16250 PF00563 EAL domain THMIRHAM_16260 PF01121 Dephospho-CoA kinase THMIRHAM_16270 PF02581 Thiamine monophosphate synthase THMIRHAM_16290 PF00155 Aminotransferase class I and II THMIRHAM_16300 PF01960 ArgJ family THMIRHAM_16310 PF07517 SecA DEAD-like domain THMIRHAM_16310 PF01043 SecA preprotein cross-linking domain THMIRHAM_16310 PF07516 SecA Wing and Scaffold domain THMIRHAM_16310 PF02810 SEC-C motif THMIRHAM_16330 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase THMIRHAM_16340 PF02491 SHS2 domain inserted in FTSA THMIRHAM_16350 PF03799 Cell division protein FtsQ THMIRHAM_16350 PF08478 POTRA domain, FtsQ-type THMIRHAM_16360 PF01820 D-ala D-ala ligase N-terminus THMIRHAM_16360 PF07478 D-ala D-ala ligase C-terminus THMIRHAM_16370 PF02875 Mur ligase family, glutamate ligase domain THMIRHAM_16370 PF08245 Mur ligase middle domain THMIRHAM_16370 PF01225 Mur ligase family, catalytic domain THMIRHAM_16390 PF00266 Aminotransferase class-V THMIRHAM_16400 PF01458 Uncharacterized protein family (UPF0051) THMIRHAM_16410 PF00005 ABC transporter THMIRHAM_16420 PF01458 Uncharacterized protein family (UPF0051) THMIRHAM_16440 PF01297 Zinc-uptake complex component A periplasmic THMIRHAM_16450 PF00005 ABC transporter THMIRHAM_16460 PF00950 ABC 3 transport family THMIRHAM_16470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_16470 PF02203 Tar ligand binding domain homologue THMIRHAM_16470 PF00672 HAMP domain THMIRHAM_16480 PF00186 Dihydrofolate reductase THMIRHAM_16490 PF00303 Thymidylate synthase THMIRHAM_16500 PF01790 Prolipoprotein diacylglyceryl transferase THMIRHAM_16510 PF12729 Four helix bundle sensory module for signal transduction THMIRHAM_16510 PF00672 HAMP domain THMIRHAM_16510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_16530 PF04101 Glycosyltransferase family 28 C-terminal domain THMIRHAM_16530 PF03033 Glycosyltransferase family 28 N-terminal domain THMIRHAM_16540 PF01098 Cell cycle protein THMIRHAM_16550 PF02875 Mur ligase family, glutamate ligase domain THMIRHAM_16550 PF08245 Mur ligase middle domain THMIRHAM_16560 PF00953 Glycosyl transferase family 4 THMIRHAM_16570 PF01225 Mur ligase family, catalytic domain THMIRHAM_16570 PF02875 Mur ligase family, glutamate ligase domain THMIRHAM_16570 PF08245 Mur ligase middle domain THMIRHAM_16580 PF08245 Mur ligase middle domain THMIRHAM_16580 PF01225 Mur ligase family, catalytic domain THMIRHAM_16580 PF02875 Mur ligase family, glutamate ligase domain THMIRHAM_16590 PF00905 Penicillin binding protein transpeptidase domain THMIRHAM_16590 PF03717 Penicillin-binding Protein dimerisation domain THMIRHAM_16610 PF12327 FtsZ family, C-terminal domain THMIRHAM_16610 PF00091 Tubulin/FtsZ family, GTPase domain THMIRHAM_16620 PF01795 MraW methylase family THMIRHAM_16630 PF02381 MraZ protein, putative antitoxin-like THMIRHAM_16670 PF04445 Putative SAM-dependent methyltransferase THMIRHAM_16680 PF00072 Response regulator receiver domain THMIRHAM_16680 PF00486 Transcriptional regulatory protein, C terminal THMIRHAM_16690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THMIRHAM_16700 PF04348 LppC putative lipoprotein THMIRHAM_16710 PF02021 Uncharacterised protein family UPF0102 THMIRHAM_16720 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THMIRHAM_16720 PF02896 PEP-utilising enzyme, TIM barrel domain THMIRHAM_16720 PF00391 PEP-utilising enzyme, mobile domain THMIRHAM_16740 PF00580 UvrD/REP helicase N-terminal domain THMIRHAM_16740 PF13361 UvrD-like helicase C-terminal domain THMIRHAM_16740 PF12705 PD-(D/E)XK nuclease superfamily THMIRHAM_16760 PF06271 RDD family THMIRHAM_16790 PF00849 RNA pseudouridylate synthase THMIRHAM_16790 PF01479 S4 domain THMIRHAM_16810 PF02811 PHP domain THMIRHAM_16810 PF00929 Exonuclease THMIRHAM_16810 PF07733 Bacterial DNA polymerase III alpha NTPase domain THMIRHAM_16810 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THMIRHAM_16810 PF14579 Helix-hairpin-helix motif THMIRHAM_16820 PF03458 UPF0126 domain THMIRHAM_16860 PF01435 Peptidase family M48 THMIRHAM_16870 PF04011 LemA family THMIRHAM_16900 PF05698 Bacterial trigger factor protein (TF) C-terminus THMIRHAM_16920 PF01070 FMN-dependent dehydrogenase THMIRHAM_16930 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal THMIRHAM_16930 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal THMIRHAM_16940 PF08544 GHMP kinases C terminal THMIRHAM_16940 PF00288 GHMP kinases N terminal domain THMIRHAM_16970 PF04386 Stringent starvation protein B THMIRHAM_16980 PF00043 Glutathione S-transferase, C-terminal domain THMIRHAM_16980 PF02798 Glutathione S-transferase, N-terminal domain THMIRHAM_16990 PF00152 tRNA synthetases class II (D, K and N) THMIRHAM_17000 PF01132 Elongation factor P (EF-P) OB domain THMIRHAM_17000 PF08207 Elongation factor P (EF-P) KOW-like domain THMIRHAM_17000 PF09285 Elongation factor P, C-terminal THMIRHAM_17010 PF04055 Radical SAM superfamily THMIRHAM_17040 PF01040 UbiA prenyltransferase family THMIRHAM_17060 PF04030 D-arabinono-1,4-lactone oxidase THMIRHAM_17060 PF01565 FAD binding domain THMIRHAM_17100 PF00535 Glycosyl transferase family 2 THMIRHAM_17130 PF02646 RmuC family THMIRHAM_17170 PF00482 Type II secretion system (T2SS), protein F THMIRHAM_17180 PF00437 Type II/IV secretion system protein THMIRHAM_17180 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THMIRHAM_17200 PF00263 Bacterial type II and III secretion system protein THMIRHAM_17200 PF03958 Bacterial type II/III secretion system short domain THMIRHAM_17210 PF01471 Putative peptidoglycan binding domain THMIRHAM_17210 PF13401 AAA domain THMIRHAM_17230 PF00575 S1 RNA binding domain THMIRHAM_17230 PF10150 Ribonuclease E/G family THMIRHAM_17240 PF02545 Maf-like protein THMIRHAM_17260 PF01565 FAD binding domain THMIRHAM_17260 PF13183 4Fe-4S dicluster domain THMIRHAM_17260 PF02913 FAD linked oxidases, C-terminal domain THMIRHAM_17280 PF02348 Cytidylyltransferase THMIRHAM_17290 PF07836 DmpG-like communication domain THMIRHAM_17290 PF00682 HMGL-like THMIRHAM_17300 PF04932 O-Antigen ligase THMIRHAM_17340 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THMIRHAM_17350 PF01370 NAD dependent epimerase/dehydratase family THMIRHAM_17360 PF01219 Prokaryotic diacylglycerol kinase THMIRHAM_17370 PF00884 Sulfatase THMIRHAM_17390 PF00005 ABC transporter THMIRHAM_17390 PF00664 ABC transporter transmembrane region THMIRHAM_17400 PF03279 Bacterial lipid A biosynthesis acyltransferase THMIRHAM_17420 PF01063 Amino-transferase class IV THMIRHAM_17440 PF00202 Aminotransferase class-III THMIRHAM_17450 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THMIRHAM_17450 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THMIRHAM_17460 PF02132 RecR protein THMIRHAM_17460 PF13662 Toprim domain THMIRHAM_17470 PF02575 YbaB/EbfC DNA-binding family THMIRHAM_17480 PF12169 DNA polymerase III subunits gamma and tau domain III THMIRHAM_17480 PF12170 DNA polymerase III tau subunit V interacting with alpha THMIRHAM_17530 PF00437 Type II/IV secretion system protein THMIRHAM_17550 PF13629 Pilus formation protein N terminal region THMIRHAM_17550 PF04972 BON domain THMIRHAM_17550 PF00263 Bacterial type II and III secretion system protein THMIRHAM_17600 PF13276 HTH-like domain THMIRHAM_17600 PF00665 Integrase core domain THMIRHAM_17600 PF13333 Integrase core domain THMIRHAM_17630 PF00665 Integrase core domain THMIRHAM_17630 PF13276 HTH-like domain THMIRHAM_17630 PF13333 Integrase core domain THMIRHAM_17640 PF00873 AcrB/AcrD/AcrF family THMIRHAM_17650 PF00529 HlyD membrane-fusion protein of T1SS THMIRHAM_17650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THMIRHAM_17670 PF02129 X-Pro dipeptidyl-peptidase (S15 family) THMIRHAM_17680 PF11890 Domain of unknown function (DUF3410) THMIRHAM_17680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THMIRHAM_17680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THMIRHAM_17690 PF03625 Domain of unknown function DUF302 THMIRHAM_17720 PF04186 FxsA cytoplasmic membrane protein THMIRHAM_17730 PF11412 Disulphide bond corrector protein DsbC THMIRHAM_17730 PF02683 Cytochrome C biogenesis protein transmembrane region THMIRHAM_17740 PF01220 Dehydroquinase class II THMIRHAM_17750 PF00364 Biotin-requiring enzyme THMIRHAM_17760 PF02785 Biotin carboxylase C-terminal domain THMIRHAM_17760 PF00289 Biotin carboxylase, N-terminal domain THMIRHAM_17760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THMIRHAM_17780 PF01207 Dihydrouridine synthase (Dus) THMIRHAM_17790 PF02954 Bacterial regulatory protein, Fis family THMIRHAM_17800 PF01808 AICARFT/IMPCHase bienzyme THMIRHAM_17800 PF02142 MGS-like domain THMIRHAM_17820 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain THMIRHAM_17820 PF02843 Phosphoribosylglycinamide synthetase, C domain THMIRHAM_17820 PF02844 Phosphoribosylglycinamide synthetase, N domain THMIRHAM_17840 PF17871 AAA lid domain THMIRHAM_17840 PF10431 C-terminal, D2-small domain, of ClpB protein THMIRHAM_17840 PF07724 AAA domain (Cdc48 subfamily) THMIRHAM_17840 PF02861 Clp amino terminal domain, pathogenicity island component THMIRHAM_17840 PF00004 ATPase family associated with various cellular activities (AAA) THMIRHAM_17860 PF06969 HemN C-terminal domain THMIRHAM_17860 PF04055 Radical SAM superfamily THMIRHAM_17870 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_17880 PF01170 Putative RNA methylase family UPF0020 THMIRHAM_17880 PF10672 S-adenosylmethionine-dependent methyltransferase THMIRHAM_17880 PF02926 THUMP domain THMIRHAM_17890 PF13406 Transglycosylase SLT domain THMIRHAM_17930 PF01252 Signal peptidase (SPase) II THMIRHAM_17940 PF08264 Anticodon-binding domain of tRNA THMIRHAM_17940 PF00133 tRNA synthetases class I (I, L, M and V) THMIRHAM_17940 PF06827 Zinc finger found in FPG and IleRS THMIRHAM_17950 PF01687 Riboflavin kinase THMIRHAM_17950 PF06574 FAD synthetase THMIRHAM_17960 PF03023 Lipid II flippase MurJ THMIRHAM_17970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THMIRHAM_17970 PF00205 Thiamine pyrophosphate enzyme, central domain THMIRHAM_17970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THMIRHAM_17990 PF12823 Domain of unknown function (DUF3817) THMIRHAM_18000 PF01649 Ribosomal protein S20 THMIRHAM_18010 PF02590 Predicted SPOUT methyltransferase THMIRHAM_18030 PF01467 Cytidylyltransferase-like THMIRHAM_18040 PF00171 Aldehyde dehydrogenase family THMIRHAM_18070 PF08264 Anticodon-binding domain of tRNA THMIRHAM_18070 PF00133 tRNA synthetases class I (I, L, M and V) THMIRHAM_18070 PF13603 Leucyl-tRNA synthetase, Domain 2 THMIRHAM_18090 PF00795 Carbon-nitrogen hydrolase THMIRHAM_18100 PF00571 CBS domain THMIRHAM_18100 PF03471 Transporter associated domain THMIRHAM_18110 PF02130 Uncharacterized protein family UPF0054 THMIRHAM_18120 PF02562 PhoH-like protein THMIRHAM_18130 PF01938 TRAM domain THMIRHAM_18130 PF00919 Uncharacterized protein family UPF0004 THMIRHAM_18130 PF04055 Radical SAM superfamily THMIRHAM_18140 PF05946 Toxin-coregulated pilus subunit TcpA THMIRHAM_18140 PF07963 Prokaryotic N-terminal methylation motif THMIRHAM_18150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_18150 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_18160 PF00196 Bacterial regulatory proteins, luxR family THMIRHAM_18160 PF00072 Response regulator receiver domain THMIRHAM_18200 PF00267 Gram-negative porin THMIRHAM_18210 PF00267 Gram-negative porin THMIRHAM_18220 PF00380 Ribosomal protein S9/S16 THMIRHAM_18230 PF00572 Ribosomal protein L13 THMIRHAM_18250 PF03459 TOBE domain THMIRHAM_18250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_18280 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_18290 PF00034 Cytochrome c THMIRHAM_18290 PF03150 Di-haem cytochrome c peroxidase THMIRHAM_18300 PF00563 EAL domain THMIRHAM_18300 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_18300 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_18310 PF02492 CobW/HypB/UreG, nucleotide-binding domain THMIRHAM_18310 PF07683 Cobalamin synthesis protein cobW C-terminal domain THMIRHAM_18320 PF00317 Ribonucleotide reductase, all-alpha domain THMIRHAM_18320 PF02867 Ribonucleotide reductase, barrel domain THMIRHAM_18320 PF03477 ATP cone domain THMIRHAM_18340 PF00459 Inositol monophosphatase family THMIRHAM_18350 PF00293 NUDIX domain THMIRHAM_18360 PF13419 Haloacid dehalogenase-like hydrolase THMIRHAM_18370 PF12848 ABC transporter THMIRHAM_18370 PF16326 ABC transporter C-terminal domain THMIRHAM_18370 PF00005 ABC transporter THMIRHAM_18390 PF08534 Redoxin THMIRHAM_18400 PF05724 Thiopurine S-methyltransferase (TPMT) THMIRHAM_18420 PF00268 Ribonucleotide reductase, small chain THMIRHAM_18430 PF00583 Acetyltransferase (GNAT) family THMIRHAM_18430 PF13380 CoA binding domain THMIRHAM_18430 PF13607 Succinyl-CoA ligase like flavodoxin domain THMIRHAM_18440 PF00850 Histone deacetylase domain THMIRHAM_18460 PF04542 Sigma-70 region 2 THMIRHAM_18460 PF08281 Sigma-70, region 4 THMIRHAM_18470 PF00005 ABC transporter THMIRHAM_18480 PF01032 FecCD transport family THMIRHAM_18490 PF03631 Virulence factor BrkB THMIRHAM_18510 PF13276 HTH-like domain THMIRHAM_18510 PF13333 Integrase core domain THMIRHAM_18510 PF00665 Integrase core domain THMIRHAM_18540 PF05114 Protein of unknown function (DUF692) THMIRHAM_18560 PF01965 DJ-1/PfpI family THMIRHAM_18570 PF03572 Peptidase family S41 THMIRHAM_18570 PF13180 PDZ domain THMIRHAM_18580 PF01022 Bacterial regulatory protein, arsR family THMIRHAM_18620 PF04546 Sigma-70, non-essential region THMIRHAM_18620 PF03979 Sigma-70 factor, region 1.1 THMIRHAM_18620 PF00140 Sigma-70 factor, region 1.2 THMIRHAM_18620 PF04542 Sigma-70 region 2 THMIRHAM_18620 PF04539 Sigma-70 region 3 THMIRHAM_18620 PF04545 Sigma-70, region 4 THMIRHAM_18630 PF10410 DnaB-helicase binding domain of primase THMIRHAM_18630 PF08278 DNA primase DnaG DnaB-binding THMIRHAM_18630 PF13662 Toprim domain THMIRHAM_18630 PF01807 CHC2 zinc finger THMIRHAM_18630 PF08275 DNA primase catalytic core, N-terminal domain THMIRHAM_18640 PF09424 Yqey-like protein THMIRHAM_18650 PF01165 Ribosomal protein S21 THMIRHAM_18660 PF00814 Glycoprotease family THMIRHAM_18670 PF02660 Glycerol-3-phosphate acyltransferase THMIRHAM_18680 PF02152 Dihydroneopterin aldolase THMIRHAM_18720 PF02673 Bacitracin resistance protein BacA THMIRHAM_18730 PF03853 YjeF-related protein N-terminus THMIRHAM_18730 PF01256 Carbohydrate kinase THMIRHAM_18740 PF00231 ATP synthase THMIRHAM_18750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMIRHAM_18750 PF00306 ATP synthase alpha/beta chain, C terminal domain THMIRHAM_18760 PF00213 ATP synthase delta (OSCP) subunit THMIRHAM_18760 PF00430 ATP synthase B/B' CF(0) THMIRHAM_18770 PF00137 ATP synthase subunit C THMIRHAM_18780 PF00119 ATP synthase A chain THMIRHAM_18810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMIRHAM_18810 PF02874 ATP synthase alpha/beta family, beta-barrel domain THMIRHAM_18820 PF02222 ATP-grasp domain THMIRHAM_18820 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain THMIRHAM_18830 PF00731 AIR carboxylase THMIRHAM_18850 PF00563 EAL domain THMIRHAM_18850 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_18850 PF08448 PAS fold THMIRHAM_18860 PF12792 CSS motif domain associated with EAL THMIRHAM_18860 PF00563 EAL domain THMIRHAM_18870 PF02773 S-adenosylmethionine synthetase, C-terminal domain THMIRHAM_18870 PF00438 S-adenosylmethionine synthetase, N-terminal domain THMIRHAM_18870 PF02772 S-adenosylmethionine synthetase, central domain THMIRHAM_18880 PF02219 Methylenetetrahydrofolate reductase THMIRHAM_18890 PF04452 RNA methyltransferase THMIRHAM_18900 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_18900 PF08448 PAS fold THMIRHAM_18920 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain THMIRHAM_18920 PF02951 Prokaryotic glutathione synthetase, N-terminal domain THMIRHAM_18930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_18930 PF08447 PAS fold THMIRHAM_18930 PF08447 PAS fold THMIRHAM_18930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_18940 PF02424 ApbE family THMIRHAM_18950 PF02622 Uncharacterized ACR, COG1678 THMIRHAM_18960 PF03652 Holliday junction resolvase THMIRHAM_18970 PF00156 Phosphoribosyl transferase domain THMIRHAM_18980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THMIRHAM_18980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THMIRHAM_18990 PF01979 Amidohydrolase family THMIRHAM_19020 PF03976 Polyphosphate kinase 2 (PPK2) THMIRHAM_19030 PF01168 Alanine racemase, N-terminal domain THMIRHAM_19060 PF03807 NADP oxidoreductase coenzyme F420-dependent THMIRHAM_19060 PF14748 Pyrroline-5-carboxylate reductase dimerisation THMIRHAM_19070 PF02325 YGGT family THMIRHAM_19080 PF00561 alpha/beta hydrolase fold THMIRHAM_19090 PF00561 alpha/beta hydrolase fold THMIRHAM_19090 PF07021 Methionine biosynthesis protein MetW THMIRHAM_19110 PF07670 Nucleoside recognition THMIRHAM_19110 PF07664 Ferrous iron transport protein B C terminus THMIRHAM_19110 PF02421 Ferrous iron transport protein B THMIRHAM_19160 PF01243 Pyridoxamine 5'-phosphate oxidase THMIRHAM_19190 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THMIRHAM_19190 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THMIRHAM_19210 PF10672 S-adenosylmethionine-dependent methyltransferase THMIRHAM_19210 PF17785 PUA-like domain THMIRHAM_19220 PF01597 Glycine cleavage H-protein THMIRHAM_19230 PF00072 Response regulator receiver domain THMIRHAM_19230 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_19240 PF00717 Peptidase S24-like THMIRHAM_19260 PF13438 Domain of unknown function (DUF4113) THMIRHAM_19260 PF00817 impB/mucB/samB family THMIRHAM_19260 PF11799 impB/mucB/samB family C-terminal domain THMIRHAM_19300 PF00005 ABC transporter THMIRHAM_19300 PF00664 ABC transporter transmembrane region THMIRHAM_19310 PF00072 Response regulator receiver domain THMIRHAM_19310 PF00486 Transcriptional regulatory protein, C terminal THMIRHAM_19320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_19320 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_19350 PF13181 Tetratricopeptide repeat THMIRHAM_19360 PF00762 Ferrochelatase THMIRHAM_19380 PF06039 Malate:quinone oxidoreductase (Mqo) THMIRHAM_19390 PF07683 Cobalamin synthesis protein cobW C-terminal domain THMIRHAM_19390 PF02492 CobW/HypB/UreG, nucleotide-binding domain THMIRHAM_19400 PF02649 Type I GTP cyclohydrolase folE2 THMIRHAM_19420 PF01594 AI-2E family transporter THMIRHAM_19430 PF11892 Domain of unknown function (DUF3412) THMIRHAM_19430 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases THMIRHAM_19430 PF03641 Possible lysine decarboxylase THMIRHAM_19440 PF00271 Helicase conserved C-terminal domain THMIRHAM_19440 PF00270 DEAD/DEAH box helicase THMIRHAM_19460 PF00171 Aldehyde dehydrogenase family THMIRHAM_19470 PF00563 EAL domain THMIRHAM_19470 PF08668 HDOD domain THMIRHAM_19480 PF01979 Amidohydrolase family THMIRHAM_19500 PF00563 EAL domain THMIRHAM_19500 PF00498 FHA domain THMIRHAM_19500 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_19510 PF01809 Putative membrane protein insertion efficiency factor THMIRHAM_19520 PF13089 Polyphosphate kinase N-terminal domain THMIRHAM_19520 PF17941 Polyphosphate kinase C-terminal domain 1 THMIRHAM_19520 PF02503 Polyphosphate kinase middle domain THMIRHAM_19520 PF13090 Polyphosphate kinase C-terminal domain 2 THMIRHAM_19530 PF02541 Ppx/GppA phosphatase family THMIRHAM_19540 PF00667 FAD binding domain THMIRHAM_19540 PF00258 Flavodoxin THMIRHAM_19540 PF00175 Oxidoreductase NAD-binding domain THMIRHAM_19560 PF01261 Xylose isomerase-like TIM barrel THMIRHAM_19570 PF00156 Phosphoribosyl transferase domain THMIRHAM_19580 PF00300 Histidine phosphatase superfamily (branch 1) THMIRHAM_19590 PF00691 OmpA family THMIRHAM_19610 PF00924 Mechanosensitive ion channel THMIRHAM_19610 PF05552 Conserved TM helix THMIRHAM_19620 PF00696 Amino acid kinase family THMIRHAM_19630 PF04461 Protein of unknown function (DUF520) THMIRHAM_19640 PF00155 Aminotransferase class I and II THMIRHAM_19650 PF00692 dUTPase THMIRHAM_19660 PF01235 Sodium:alanine symporter family THMIRHAM_19670 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_19670 PF05230 MASE2 domain THMIRHAM_19680 PF03313 Serine dehydratase alpha chain THMIRHAM_19680 PF03315 Serine dehydratase beta chain THMIRHAM_19690 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_19690 PF00563 EAL domain THMIRHAM_19690 PF08495 FIST N domain THMIRHAM_19690 PF10442 FIST C domain THMIRHAM_19700 PF02441 Flavoprotein THMIRHAM_19700 PF04127 DNA / pantothenate metabolism flavoprotein THMIRHAM_19720 PF01292 Prokaryotic cytochrome b561 THMIRHAM_19730 PF10518 TAT (twin-arginine translocation) pathway signal sequence THMIRHAM_19730 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_19730 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THMIRHAM_19760 PF04002 RadC-like JAB domain THMIRHAM_19770 PF10518 TAT (twin-arginine translocation) pathway signal sequence THMIRHAM_19770 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_19770 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THMIRHAM_19790 PF00924 Mechanosensitive ion channel THMIRHAM_19790 PF12795 Mechanosensitive ion channel porin domain THMIRHAM_19790 PF12794 Mechanosensitive ion channel inner membrane domain 1 THMIRHAM_19820 PF00830 Ribosomal L28 family THMIRHAM_19830 PF00471 Ribosomal protein L33 THMIRHAM_19840 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_19840 PF17158 Membrane-associated sensor, integral membrane domain THMIRHAM_19860 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain THMIRHAM_19860 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain THMIRHAM_19860 PF06827 Zinc finger found in FPG and IleRS THMIRHAM_19870 PF00689 Cation transporting ATPase, C-terminus THMIRHAM_19870 PF00690 Cation transporter/ATPase, N-terminus THMIRHAM_19880 PF03459 TOBE domain THMIRHAM_19880 PF00005 ABC transporter THMIRHAM_19890 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_19910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_19910 PF03459 TOBE domain THMIRHAM_19940 PF01467 Cytidylyltransferase-like THMIRHAM_19950 PF00194 Eukaryotic-type carbonic anhydrase THMIRHAM_19970 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_19970 PF00563 EAL domain THMIRHAM_19970 PF13185 GAF domain THMIRHAM_19980 PF17783 CvfB-like winged helix domain THMIRHAM_19980 PF13509 S1 domain THMIRHAM_20010 PF00881 Nitroreductase family THMIRHAM_20020 PF05193 Peptidase M16 inactive domain THMIRHAM_20030 PF00675 Insulinase (Peptidase family M16) THMIRHAM_20030 PF05193 Peptidase M16 inactive domain THMIRHAM_20040 PF00448 SRP54-type protein, GTPase domain THMIRHAM_20040 PF02881 SRP54-type protein, helical bundle domain THMIRHAM_20070 PF02801 Beta-ketoacyl synthase, C-terminal domain THMIRHAM_20070 PF00109 Beta-ketoacyl synthase, N-terminal domain THMIRHAM_20080 PF07977 FabA-like domain THMIRHAM_20090 PF03309 Type III pantothenate kinase THMIRHAM_20100 PF01479 S4 domain THMIRHAM_20100 PF00579 tRNA synthetases class I (W and Y) THMIRHAM_20110 PF01180 Dihydroorotate dehydrogenase THMIRHAM_20120 PF00588 SpoU rRNA Methylase family THMIRHAM_20130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus THMIRHAM_20130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THMIRHAM_20140 PF02556 Preprotein translocase subunit SecB THMIRHAM_20150 PF00462 Glutaredoxin THMIRHAM_20170 PF06415 BPG-independent PGAM N-terminus (iPGM_N) THMIRHAM_20170 PF01676 Metalloenzyme superfamily THMIRHAM_20180 PF13091 PLD-like domain THMIRHAM_20180 PF13396 Phospholipase_D-nuclease N-terminal THMIRHAM_20190 PF03372 Endonuclease/Exonuclease/phosphatase family THMIRHAM_20200 PF00310 Glutamine amidotransferases class-II THMIRHAM_20200 PF04898 Glutamate synthase central domain THMIRHAM_20200 PF01645 Conserved region in glutamate synthase THMIRHAM_20200 PF01493 GXGXG motif THMIRHAM_20210 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THMIRHAM_20210 PF07992 Pyridine nucleotide-disulphide oxidoreductase THMIRHAM_20240 PF02906 Iron only hydrogenase large subunit, C-terminal domain THMIRHAM_20240 PF02256 Iron hydrogenase small subunit THMIRHAM_20240 PF00037 4Fe-4S binding domain THMIRHAM_20240 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THMIRHAM_20300 PF00563 EAL domain THMIRHAM_20300 PF08668 HDOD domain THMIRHAM_20310 PF00390 Malic enzyme, N-terminal domain THMIRHAM_20310 PF03949 Malic enzyme, NAD binding domain THMIRHAM_20330 PF01343 Peptidase family S49 THMIRHAM_20340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THMIRHAM_20340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THMIRHAM_20350 PF17158 Membrane-associated sensor, integral membrane domain THMIRHAM_20350 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_20360 PF03480 Bacterial extracellular solute-binding protein, family 7 THMIRHAM_20370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_20370 PF08447 PAS fold THMIRHAM_20370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_20370 PF08447 PAS fold THMIRHAM_20380 PF01627 Hpt domain THMIRHAM_20380 PF17149 Periplasmic sensor domain found in signal transduction proteins THMIRHAM_20380 PF00672 HAMP domain THMIRHAM_20380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_20380 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_20380 PF00072 Response regulator receiver domain THMIRHAM_20390 PF00672 HAMP domain THMIRHAM_20390 PF02203 Tar ligand binding domain homologue THMIRHAM_20390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_20410 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_20410 PF09308 LuxQ, periplasmic THMIRHAM_20410 PF00072 Response regulator receiver domain THMIRHAM_20410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_20420 PF01556 DnaJ C terminal domain THMIRHAM_20420 PF00226 DnaJ domain THMIRHAM_20440 PF07715 TonB-dependent Receptor Plug Domain THMIRHAM_20440 PF00593 TonB dependent receptor THMIRHAM_20460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THMIRHAM_20460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THMIRHAM_20460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THMIRHAM_20460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THMIRHAM_20470 PF01734 Patatin-like phospholipase THMIRHAM_20480 PF01132 Elongation factor P (EF-P) OB domain THMIRHAM_20480 PF08207 Elongation factor P (EF-P) KOW-like domain THMIRHAM_20480 PF09285 Elongation factor P, C-terminal THMIRHAM_20490 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_20490 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_20490 PF00563 EAL domain THMIRHAM_20500 PF00999 Sodium/hydrogen exchanger family THMIRHAM_20510 PF18030 RimK PreATP-grasp domain THMIRHAM_20510 PF08443 RimK-like ATP-grasp domain THMIRHAM_20540 PF08448 PAS fold THMIRHAM_20540 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_20550 PF00578 AhpC/TSA family THMIRHAM_20590 PF00684 DnaJ central domain THMIRHAM_20590 PF01556 DnaJ C terminal domain THMIRHAM_20590 PF00226 DnaJ domain THMIRHAM_20620 PF03649 Uncharacterised protein family (UPF0014) THMIRHAM_20630 PF00005 ABC transporter THMIRHAM_20640 PF13361 UvrD-like helicase C-terminal domain THMIRHAM_20640 PF00580 UvrD/REP helicase N-terminal domain THMIRHAM_20650 PF00085 Thioredoxin THMIRHAM_20660 PF07497 Rho termination factor, RNA-binding domain THMIRHAM_20660 PF07498 Rho termination factor, N-terminal domain THMIRHAM_20660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMIRHAM_20670 PF01197 Ribosomal protein L31 THMIRHAM_20690 PF01208 Uroporphyrinogen decarboxylase (URO-D) THMIRHAM_20710 PF00563 EAL domain THMIRHAM_20710 PF08668 HDOD domain THMIRHAM_20720 PF04362 Bacterial Fe(2+) trafficking THMIRHAM_20730 PF14815 NUDIX domain THMIRHAM_20730 PF00730 HhH-GPD superfamily base excision DNA repair protein THMIRHAM_20740 PF02390 Putative methyltransferase THMIRHAM_20760 PF04055 Radical SAM superfamily THMIRHAM_20760 PF06969 HemN C-terminal domain THMIRHAM_20780 PF10996 Beta-Casp domain THMIRHAM_20780 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain THMIRHAM_20780 PF00753 Metallo-beta-lactamase superfamily THMIRHAM_20790 PF01725 Ham1 family THMIRHAM_20800 PF03755 YicC-like family, N-terminal region THMIRHAM_20800 PF08340 Domain of unknown function (DUF1732) THMIRHAM_20820 PF17092 Penicillin-binding protein OB-like domain THMIRHAM_20820 PF00912 Transglycosylase THMIRHAM_20820 PF00905 Penicillin binding protein transpeptidase domain THMIRHAM_20830 PF03881 Fructosamine kinase THMIRHAM_20840 PF05191 Adenylate kinase, active site lid THMIRHAM_20850 PF07690 Major Facilitator Superfamily THMIRHAM_20910 PF00482 Type II secretion system (T2SS), protein F THMIRHAM_20920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THMIRHAM_20920 PF00437 Type II/IV secretion system protein THMIRHAM_20930 PF13401 AAA domain THMIRHAM_20930 PF01471 Putative peptidoglycan binding domain THMIRHAM_20950 PF03958 Bacterial type II/III secretion system short domain THMIRHAM_20950 PF00263 Bacterial type II and III secretion system protein THMIRHAM_21030 PF00486 Transcriptional regulatory protein, C terminal THMIRHAM_21030 PF00072 Response regulator receiver domain THMIRHAM_21040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_21040 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_21040 PF00072 Response regulator receiver domain THMIRHAM_21040 PF09308 LuxQ, periplasmic THMIRHAM_21070 PF12693 GspL periplasmic domain THMIRHAM_21070 PF05134 Type II secretion system (T2SS), protein L THMIRHAM_21080 PF03934 Type II secretion system (T2SS), protein K THMIRHAM_21090 PF07963 Prokaryotic N-terminal methylation motif THMIRHAM_21090 PF11612 Type II secretion system (T2SS), protein J THMIRHAM_21100 PF07963 Prokaryotic N-terminal methylation motif THMIRHAM_21100 PF02501 Type II secretion system (T2SS), protein I THMIRHAM_21120 PF07963 Prokaryotic N-terminal methylation motif THMIRHAM_21120 PF08334 Type II secretion system (T2SS), protein G THMIRHAM_21130 PF00482 Type II secretion system (T2SS), protein F THMIRHAM_21140 PF00437 Type II/IV secretion system protein THMIRHAM_21150 PF03958 Bacterial type II/III secretion system short domain THMIRHAM_21150 PF00263 Bacterial type II and III secretion system protein THMIRHAM_21170 PF01050 Mannose-6-phosphate isomerase THMIRHAM_21170 PF00483 Nucleotidyl transferase THMIRHAM_21190 PF00873 AcrB/AcrD/AcrF family THMIRHAM_21200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THMIRHAM_21200 PF00529 HlyD membrane-fusion protein of T1SS THMIRHAM_21210 PF01370 NAD dependent epimerase/dehydratase family THMIRHAM_21210 PF08338 Domain of unknown function (DUF1731) THMIRHAM_21220 PF03441 FAD binding domain of DNA photolyase THMIRHAM_21220 PF00875 DNA photolyase THMIRHAM_21270 PF01243 Pyridoxamine 5'-phosphate oxidase THMIRHAM_21270 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region THMIRHAM_21300 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component THMIRHAM_21320 PF03480 Bacterial extracellular solute-binding protein, family 7 THMIRHAM_21340 PF13404 AsnC-type helix-turn-helix domain THMIRHAM_21340 PF01037 Lrp/AsnC ligand binding domain THMIRHAM_21360 PF00762 Ferrochelatase THMIRHAM_21380 PF13426 PAS domain THMIRHAM_21380 PF01740 STAS domain THMIRHAM_21390 PF13411 MerR HTH family regulatory protein THMIRHAM_21400 PF03441 FAD binding domain of DNA photolyase THMIRHAM_21400 PF00875 DNA photolyase THMIRHAM_21450 PF01593 Flavin containing amine oxidoreductase THMIRHAM_21460 PF00106 short chain dehydrogenase THMIRHAM_21490 PF03466 LysR substrate binding domain THMIRHAM_21490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_21500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THMIRHAM_21500 PF03466 LysR substrate binding domain THMIRHAM_21520 PF01725 Ham1 family THMIRHAM_21540 PF01329 Pterin 4 alpha carbinolamine dehydratase THMIRHAM_21560 PF00936 BMC domain THMIRHAM_21570 PF00936 BMC domain THMIRHAM_21580 PF00936 BMC domain THMIRHAM_21590 PF00936 BMC domain THMIRHAM_21640 PF00101 Ribulose bisphosphate carboxylase, small chain THMIRHAM_21650 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THMIRHAM_21650 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THMIRHAM_21660 PF00361 Proton-conducting membrane transporter THMIRHAM_21660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THMIRHAM_21670 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) THMIRHAM_21690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THMIRHAM_21690 PF00512 His Kinase A (phospho-acceptor) domain THMIRHAM_21690 PF09308 LuxQ, periplasmic THMIRHAM_21690 PF00072 Response regulator receiver domain THMIRHAM_21700 PF13416 Bacterial extracellular solute-binding protein THMIRHAM_21710 PF00005 ABC transporter THMIRHAM_21710 PF08402 TOBE domain THMIRHAM_21720 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_21730 PF00528 Binding-protein-dependent transport system inner membrane component THMIRHAM_21740 PF00128 Alpha amylase, catalytic domain THMIRHAM_21750 PF05166 YcgL domain THMIRHAM_21750 PF05116 Sucrose-6F-phosphate phosphohydrolase THMIRHAM_21760 PF00862 Sucrose synthase THMIRHAM_21760 PF00534 Glycosyl transferases group 1 THMIRHAM_21770 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase THMIRHAM_21780 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain THMIRHAM_21780 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain THMIRHAM_21790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THMIRHAM_21790 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain THMIRHAM_21800 PF00128 Alpha amylase, catalytic domain THMIRHAM_21840 PF02664 S-Ribosylhomocysteinase (LuxS) THMIRHAM_21850 PF01048 Phosphorylase superfamily THMIRHAM_21860 PF09997 Predicted membrane protein (DUF2238) THMIRHAM_21870 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_21870 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_21870 PF00563 EAL domain THMIRHAM_21880 PF01370 NAD dependent epimerase/dehydratase family THMIRHAM_21880 PF02222 ATP-grasp domain THMIRHAM_21900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_21900 PF00672 HAMP domain THMIRHAM_21900 PF02203 Tar ligand binding domain homologue THMIRHAM_21910 PF04545 Sigma-70, region 4 THMIRHAM_21910 PF04542 Sigma-70 region 2 THMIRHAM_21910 PF00140 Sigma-70 factor, region 1.2 THMIRHAM_21950 PF00155 Aminotransferase class I and II THMIRHAM_21970 PF01263 Aldose 1-epimerase THMIRHAM_21980 PF01761 3-dehydroquinate synthase THMIRHAM_21990 PF01202 Shikimate kinase THMIRHAM_22000 PF00625 Guanylate kinase THMIRHAM_22010 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THMIRHAM_22020 PF00465 Iron-containing alcohol dehydrogenase THMIRHAM_22030 PF02348 Cytidylyltransferase THMIRHAM_22040 PF00534 Glycosyl transferases group 1 THMIRHAM_22040 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) THMIRHAM_22050 PF01192 RNA polymerase Rpb6 THMIRHAM_22060 PF04607 Region found in RelA / SpoT proteins THMIRHAM_22060 PF02824 TGS domain THMIRHAM_22060 PF13291 ACT domain THMIRHAM_22070 PF00990 Diguanylate cyclase, GGDEF domain THMIRHAM_22070 PF00563 EAL domain THMIRHAM_22070 PF03707 Bacterial signalling protein N terminal repeat THMIRHAM_22080 PF01042 Endoribonuclease L-PSP THMIRHAM_22090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THMIRHAM_22090 PF08447 PAS fold THMIRHAM_22090 PF13426 PAS domain THMIRHAM_22110 PF00270 DEAD/DEAH box helicase THMIRHAM_22110 PF00271 Helicase conserved C-terminal domain THMIRHAM_22110 PF17191 RecG wedge domain THMIRHAM_22120 PF04345 Chorismate lyase THMIRHAM_22160 PF01040 UbiA prenyltransferase family THMIRHAM_22180 PF00132 Bacterial transferase hexapeptide (six repeats) THMIRHAM_22180 PF12804 MobA-like NTP transferase domain THMIRHAM_22190 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain THMIRHAM_22190 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain THMIRHAM_22200 PF02874 ATP synthase alpha/beta family, beta-barrel domain THMIRHAM_22200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMIRHAM_22210 PF00231 ATP synthase THMIRHAM_22220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THMIRHAM_22220 PF00306 ATP synthase alpha/beta chain, C terminal domain THMIRHAM_22220 PF02874 ATP synthase alpha/beta family, beta-barrel domain THMIRHAM_22230 PF00213 ATP synthase delta (OSCP) subunit THMIRHAM_22240 PF00430 ATP synthase B/B' CF(0) THMIRHAM_22250 PF00137 ATP synthase subunit C THMIRHAM_22260 PF00119 ATP synthase A chain THMIRHAM_22290 PF17762 HTH domain found in ParB protein THMIRHAM_22290 PF02195 ParB-like nuclease domain THMIRHAM_22300 PF13614 AAA domain THMIRHAM_22310 PF02527 rRNA small subunit methyltransferase G THMIRHAM_22320 PF13932 GidA associated domain THMIRHAM_22320 PF01134 Glucose inhibited division protein A THMIRHAM_22360 PF14489 QueF-like protein THMIRHAM_22360 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term THMIRHAM_22380 PF00850 Histone deacetylase domain THMIRHAM_22410 PF09186 Domain of unknown function (DUF1949) THMIRHAM_22410 PF01205 Uncharacterized protein family UPF0029 THMIRHAM_22430 PF00873 AcrB/AcrD/AcrF family THMIRHAM_22450 PF01926 50S ribosome-binding GTPase THMIRHAM_22450 PF12631 MnmE helical domain THMIRHAM_22450 PF10396 GTP-binding protein TrmE N-terminus THMIRHAM_22470 PF02096 60Kd inner membrane protein THMIRHAM_22470 PF14849 YidC periplasmic domain THMIRHAM_22480 PF00825 Ribonuclease P THMIRHAM_22490 PF00468 Ribosomal protein L34 THMIRHAM_22500 PF09335 SNARE associated Golgi protein THMIRHAM_22510 PF01925 Sulfite exporter TauE/SafE