locus-tag class description THIAE_00005 PF11638 DnaA N-terminal domain THIAE_00005 PF08299 Bacterial dnaA protein helix-turn-helix THIAE_00005 PF00308 Bacterial dnaA protein THIAE_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain THIAE_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain THIAE_00010 PF02767 DNA polymerase III beta subunit, central domain THIAE_00020 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THIAE_00020 PF10518 TAT (twin-arginine translocation) pathway signal sequence THIAE_00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_00025 PF01380 SIS domain THIAE_00030 PF06463 Molybdenum Cofactor Synthesis C THIAE_00030 PF04055 Radical SAM superfamily THIAE_00035 PF02597 ThiS family THIAE_00040 PF02391 MoaE protein THIAE_00045 PF00994 Probable molybdopterin binding domain THIAE_00045 PF03454 MoeA C-terminal region (domain IV) THIAE_00045 PF03453 MoeA N-terminal region (domain I and II) THIAE_00050 PF01967 MoaC family THIAE_00060 PF01370 NAD dependent epimerase/dehydratase family THIAE_00060 PF02222 ATP-grasp domain THIAE_00065 PF01048 Phosphorylase superfamily THIAE_00070 PF02664 S-Ribosylhomocysteinase (LuxS) THIAE_00090 PF11849 Domain of unknown function (DUF3369) THIAE_00100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_00100 PF00672 HAMP domain THIAE_00100 PF00512 His Kinase A (phospho-acceptor) domain THIAE_00100 PF00072 Response regulator receiver domain THIAE_00100 PF01627 Hpt domain THIAE_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_00105 PF00360 Phytochrome region THIAE_00105 PF00990 Diguanylate cyclase, GGDEF domain THIAE_00105 PF01590 GAF domain THIAE_00105 PF00563 EAL domain THIAE_00110 PF02646 RmuC family THIAE_00115 PF11849 Domain of unknown function (DUF3369) THIAE_00120 PF00072 Response regulator receiver domain THIAE_00125 PF00512 His Kinase A (phospho-acceptor) domain THIAE_00125 PF00072 Response regulator receiver domain THIAE_00125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_00125 PF00672 HAMP domain THIAE_00125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_00125 PF01627 Hpt domain THIAE_00145 PF00196 Bacterial regulatory proteins, luxR family THIAE_00145 PF00072 Response regulator receiver domain THIAE_00150 PF00529 HlyD membrane-fusion protein of T1SS THIAE_00155 PF03412 Peptidase C39 family THIAE_00155 PF00005 ABC transporter THIAE_00155 PF00664 ABC transporter transmembrane region THIAE_00160 PF05736 OprF membrane domain THIAE_00160 PF00691 OmpA family THIAE_00175 PF12867 DinB superfamily THIAE_00175 PF03781 Sulfatase-modifying factor enzyme 1 THIAE_00180 PF00155 Aminotransferase class I and II THIAE_00190 PF02203 Tar ligand binding domain homologue THIAE_00190 PF00672 HAMP domain THIAE_00190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_00195 PF05191 Adenylate kinase, active site lid THIAE_00200 PF00905 Penicillin binding protein transpeptidase domain THIAE_00200 PF17092 Penicillin-binding protein OB-like domain THIAE_00200 PF00912 Transglycosylase THIAE_00210 PF01138 3' exoribonuclease family, domain 1 THIAE_00210 PF03725 3' exoribonuclease family, domain 2 THIAE_00215 PF01725 Ham1 family THIAE_00220 PF04055 Radical SAM superfamily THIAE_00220 PF06969 HemN C-terminal domain THIAE_00230 PF00271 Helicase conserved C-terminal domain THIAE_00230 PF00270 DEAD/DEAH box helicase THIAE_00255 PF00561 alpha/beta hydrolase fold THIAE_00270 PF04143 Sulphur transport THIAE_00275 PF01740 STAS domain THIAE_00275 PF00916 Sulfate permease family THIAE_00295 PF02574 Homocysteine S-methyltransferase THIAE_00295 PF00809 Pterin binding enzyme THIAE_00295 PF02965 Vitamin B12 dependent methionine synthase, activation domain THIAE_00295 PF02607 B12 binding domain THIAE_00295 PF02310 B12 binding domain THIAE_00305 PF04345 Chorismate lyase THIAE_00310 PF00270 DEAD/DEAH box helicase THIAE_00310 PF00271 Helicase conserved C-terminal domain THIAE_00310 PF17191 RecG wedge domain THIAE_00315 PF01042 Endoribonuclease L-PSP THIAE_00320 PF13291 ACT domain THIAE_00320 PF04607 Region found in RelA / SpoT proteins THIAE_00320 PF02824 TGS domain THIAE_00325 PF01192 RNA polymerase Rpb6 THIAE_00330 PF05552 Conserved TM helix THIAE_00330 PF00924 Mechanosensitive ion channel THIAE_00335 PF00132 Bacterial transferase hexapeptide (six repeats) THIAE_00340 PF08501 Shikimate dehydrogenase substrate binding domain THIAE_00340 PF01488 Shikimate / quinate 5-dehydrogenase THIAE_00340 PF18317 Shikimate 5'-dehydrogenase C-terminal domain THIAE_00345 PF00490 Delta-aminolevulinic acid dehydratase THIAE_00350 PF00174 Oxidoreductase molybdopterin binding domain THIAE_00360 PF01636 Phosphotransferase enzyme family THIAE_00365 PF00360 Phytochrome region THIAE_00365 PF00990 Diguanylate cyclase, GGDEF domain THIAE_00365 PF01590 GAF domain THIAE_00365 PF00563 EAL domain THIAE_00370 PF03971 Monomeric isocitrate dehydrogenase THIAE_00375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THIAE_00375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THIAE_00375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THIAE_00375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THIAE_00380 PF00111 2Fe-2S iron-sulfur cluster binding domain THIAE_00380 PF00970 Oxidoreductase FAD-binding domain THIAE_00380 PF00175 Oxidoreductase NAD-binding domain THIAE_00385 PF03372 Endonuclease/Exonuclease/phosphatase family THIAE_00390 PF00551 Formyl transferase THIAE_00390 PF01842 ACT domain THIAE_00395 PF13718 GNAT acetyltransferase 2 THIAE_00395 PF05127 Helicase THIAE_00400 PF05430 S-adenosyl-L-methionine-dependent methyltransferase THIAE_00400 PF01266 FAD dependent oxidoreductase THIAE_00425 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_00450 PF00691 OmpA family THIAE_00455 PF00462 Glutaredoxin THIAE_00455 PF08534 Redoxin THIAE_00460 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_00460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THIAE_00465 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) THIAE_00470 PF02348 Cytidylyltransferase THIAE_00475 PF00465 Iron-containing alcohol dehydrogenase THIAE_00480 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THIAE_00485 PF00625 Guanylate kinase THIAE_00490 PF01202 Shikimate kinase THIAE_00495 PF01761 3-dehydroquinate synthase THIAE_00500 PF01263 Aldose 1-epimerase THIAE_00515 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain THIAE_00515 PF02777 Iron/manganese superoxide dismutases, C-terminal domain THIAE_00520 PF05166 YcgL domain THIAE_00525 PF13460 NAD(P)H-binding THIAE_00525 PF11066 Protein of unknown function (DUF2867) THIAE_00530 PF01966 HD domain THIAE_00530 PF01743 Poly A polymerase head domain THIAE_00530 PF12627 Probable RNA and SrmB- binding site of polymerase A THIAE_00540 PF00873 AcrB/AcrD/AcrF family THIAE_00550 PF02780 Transketolase, C-terminal domain THIAE_00550 PF00456 Transketolase, thiamine diphosphate binding domain THIAE_00550 PF02779 Transketolase, pyrimidine binding domain THIAE_00555 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THIAE_00555 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THIAE_00560 PF00162 Phosphoglycerate kinase THIAE_00565 PF02887 Pyruvate kinase, alpha/beta domain THIAE_00565 PF00224 Pyruvate kinase, barrel domain THIAE_00570 PF01116 Fructose-bisphosphate aldolase class-II THIAE_00575 PF07728 AAA domain (dynein-related subfamily) THIAE_00575 PF12102 Domain of unknown function (DUF3578) THIAE_00595 PF01053 Cys/Met metabolism PLP-dependent enzyme THIAE_00605 PF01259 SAICAR synthetase THIAE_00615 PF00834 Ribulose-phosphate 3 epimerase family THIAE_00620 PF13419 Haloacid dehalogenase-like hydrolase THIAE_00625 PF00425 chorismate binding enzyme THIAE_00625 PF04715 Anthranilate synthase component I, N terminal region THIAE_00630 PF00117 Glutamine amidotransferase class-I THIAE_00635 PF02885 Glycosyl transferase family, helical bundle domain THIAE_00635 PF00591 Glycosyl transferase family, a/b domain THIAE_00640 PF00218 Indole-3-glycerol phosphate synthase THIAE_00645 PF02566 OsmC-like protein THIAE_00650 PF02675 S-adenosylmethionine decarboxylase THIAE_00655 PF17284 Spermidine synthase tetramerisation domain THIAE_00660 PF00202 Aminotransferase class-III THIAE_00680 PF03143 Elongation factor Tu C-terminal domain THIAE_00680 PF00009 Elongation factor Tu GTP binding domain THIAE_00680 PF03144 Elongation factor Tu domain 2 THIAE_00690 PF00584 SecE/Sec61-gamma subunits of protein translocation complex THIAE_00695 PF00467 KOW motif THIAE_00695 PF02357 Transcription termination factor nusG THIAE_00700 PF00298 Ribosomal protein L11, RNA binding domain THIAE_00700 PF03946 Ribosomal protein L11, N-terminal domain THIAE_00705 PF00687 Ribosomal protein L1p/L10e family THIAE_00710 PF00466 Ribosomal protein L10 THIAE_00715 PF00542 Ribosomal protein L7/L12 C-terminal domain THIAE_00715 PF16320 Ribosomal protein L7/L12 dimerisation domain THIAE_00720 PF00562 RNA polymerase Rpb2, domain 6 THIAE_00720 PF04560 RNA polymerase Rpb2, domain 7 THIAE_00720 PF04565 RNA polymerase Rpb2, domain 3 THIAE_00720 PF04561 RNA polymerase Rpb2, domain 2 THIAE_00720 PF04563 RNA polymerase beta subunit THIAE_00720 PF10385 RNA polymerase beta subunit external 1 domain THIAE_00725 PF00623 RNA polymerase Rpb1, domain 2 THIAE_00725 PF04998 RNA polymerase Rpb1, domain 5 THIAE_00725 PF04997 RNA polymerase Rpb1, domain 1 THIAE_00725 PF04983 RNA polymerase Rpb1, domain 3 THIAE_00725 PF05000 RNA polymerase Rpb1, domain 4 THIAE_00730 PF00164 Ribosomal protein S12/S23 THIAE_00735 PF00177 Ribosomal protein S7p/S5e THIAE_00740 PF00009 Elongation factor Tu GTP binding domain THIAE_00740 PF03764 Elongation factor G, domain IV THIAE_00740 PF14492 Elongation Factor G, domain II THIAE_00740 PF00679 Elongation factor G C-terminus THIAE_00740 PF03144 Elongation factor Tu domain 2 THIAE_00745 PF03144 Elongation factor Tu domain 2 THIAE_00745 PF00009 Elongation factor Tu GTP binding domain THIAE_00745 PF03143 Elongation factor Tu C-terminal domain THIAE_00750 PF00338 Ribosomal protein S10p/S20e THIAE_00755 PF00297 Ribosomal protein L3 THIAE_00760 PF00573 Ribosomal protein L4/L1 family THIAE_00765 PF00276 Ribosomal protein L23 THIAE_00770 PF03947 Ribosomal Proteins L2, C-terminal domain THIAE_00770 PF00181 Ribosomal Proteins L2, RNA binding domain THIAE_00775 PF00203 Ribosomal protein S19 THIAE_00780 PF00237 Ribosomal protein L22p/L17e THIAE_00785 PF00189 Ribosomal protein S3, C-terminal domain THIAE_00785 PF07650 KH domain THIAE_00790 PF00252 Ribosomal protein L16p/L10e THIAE_00795 PF00831 Ribosomal L29 protein THIAE_00800 PF00366 Ribosomal protein S17 THIAE_00805 PF00238 Ribosomal protein L14p/L23e THIAE_00810 PF00467 KOW motif THIAE_00810 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 THIAE_00815 PF00281 Ribosomal protein L5 THIAE_00815 PF00673 ribosomal L5P family C-terminus THIAE_00820 PF00253 Ribosomal protein S14p/S29e THIAE_00825 PF00410 Ribosomal protein S8 THIAE_00830 PF00347 Ribosomal protein L6 THIAE_00835 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast THIAE_00840 PF00333 Ribosomal protein S5, N-terminal domain THIAE_00840 PF03719 Ribosomal protein S5, C-terminal domain THIAE_00845 PF00327 Ribosomal protein L30p/L7e THIAE_00850 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A THIAE_00855 PF00344 SecY translocase THIAE_00860 PF00416 Ribosomal protein S13/S18 THIAE_00865 PF00411 Ribosomal protein S11 THIAE_00870 PF00163 Ribosomal protein S4/S9 N-terminal domain THIAE_00870 PF01479 S4 domain THIAE_00875 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain THIAE_00875 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain THIAE_00875 PF01000 RNA polymerase Rpb3/RpoA insert domain THIAE_00880 PF01196 Ribosomal protein L17 THIAE_00885 PF01026 TatD related DNase THIAE_00890 PF00899 ThiF family THIAE_00900 PF02560 Cyanate lyase C-terminal domain THIAE_00905 PF00005 ABC transporter THIAE_00910 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_00915 PF00005 ABC transporter THIAE_00920 PF01590 GAF domain THIAE_00920 PF00158 Sigma-54 interaction domain THIAE_00925 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THIAE_00925 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THIAE_00940 PF02441 Flavoprotein THIAE_00940 PF04127 DNA / pantothenate metabolism flavoprotein THIAE_00950 PF17755 UvrA DNA-binding domain THIAE_00950 PF17760 UvrA interaction domain THIAE_00970 PF03441 FAD binding domain of DNA photolyase THIAE_00970 PF00875 DNA photolyase THIAE_00980 PF04244 Deoxyribodipyrimidine photo-lyase-related protein THIAE_00990 PF07690 Major Facilitator Superfamily THIAE_00995 PF00436 Single-strand binding protein family THIAE_01005 PF00348 Polyprenyl synthetase THIAE_01010 PF00829 Ribosomal prokaryotic L21 protein THIAE_01015 PF01016 Ribosomal L27 protein THIAE_01020 PF01926 50S ribosome-binding GTPase THIAE_01020 PF01018 GTP1/OBG THIAE_01025 PF00696 Amino acid kinase family THIAE_01025 PF01472 PUA domain THIAE_01030 PF07690 Major Facilitator Superfamily THIAE_01040 PF02028 BCCT, betaine/carnitine/choline family transporter THIAE_01045 PF12792 CSS motif domain associated with EAL THIAE_01045 PF00563 EAL domain THIAE_01050 PF00166 Chaperonin 10 Kd subunit THIAE_01055 PF00118 TCP-1/cpn60 chaperonin family THIAE_01060 PF01118 Semialdehyde dehydrogenase, NAD binding domain THIAE_01060 PF02774 Semialdehyde dehydrogenase, dimerisation domain THIAE_01065 PF01521 Iron-sulphur cluster biosynthesis THIAE_01070 PF00285 Citrate synthase, C-terminal domain THIAE_01075 PF00572 Ribosomal protein L13 THIAE_01080 PF00380 Ribosomal protein S9/S16 THIAE_01085 PF01740 STAS domain THIAE_01085 PF13426 PAS domain THIAE_01090 PF13411 MerR HTH family regulatory protein THIAE_01095 PF03441 FAD binding domain of DNA photolyase THIAE_01095 PF00875 DNA photolyase THIAE_01120 PF01266 FAD dependent oxidoreductase THIAE_01125 PF00106 short chain dehydrogenase THIAE_01140 PF00950 ABC 3 transport family THIAE_01145 PF00005 ABC transporter THIAE_01150 PF01297 Zinc-uptake complex component A periplasmic THIAE_01160 PF01458 Uncharacterized protein family (UPF0051) THIAE_01165 PF00005 ABC transporter THIAE_01170 PF01458 Uncharacterized protein family (UPF0051) THIAE_01175 PF00266 Aminotransferase class-V THIAE_01180 PF01225 Mur ligase family, catalytic domain THIAE_01180 PF02875 Mur ligase family, glutamate ligase domain THIAE_01180 PF08245 Mur ligase middle domain THIAE_01185 PF01820 D-ala D-ala ligase N-terminus THIAE_01185 PF07478 D-ala D-ala ligase C-terminus THIAE_01190 PF03799 Cell division protein FtsQ THIAE_01190 PF08478 POTRA domain, FtsQ-type THIAE_01195 PF02491 SHS2 domain inserted in FTSA THIAE_01200 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase THIAE_01210 PF02810 SEC-C motif THIAE_01210 PF07517 SecA DEAD-like domain THIAE_01210 PF07516 SecA Wing and Scaffold domain THIAE_01210 PF01043 SecA preprotein cross-linking domain THIAE_01215 PF01960 ArgJ family THIAE_01220 PF02581 Thiamine monophosphate synthase THIAE_01225 PF01121 Dephospho-CoA kinase THIAE_01235 PF00733 Asparagine synthase THIAE_01235 PF13537 Glutamine amidotransferase domain THIAE_01240 PF00462 Glutaredoxin THIAE_01245 PF00929 Exonuclease THIAE_01250 PF00696 Amino acid kinase family THIAE_01250 PF00583 Acetyltransferase (GNAT) family THIAE_01255 PF00920 Dehydratase family THIAE_01285 PF01435 Peptidase family M48 THIAE_01290 PF01206 Sulfurtransferase TusA THIAE_01295 PF00483 Nucleotidyl transferase THIAE_01300 PF00342 Phosphoglucose isomerase THIAE_01305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THIAE_01305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THIAE_01305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THIAE_01310 PF01066 CDP-alcohol phosphatidyltransferase THIAE_01315 PF08502 LeuA allosteric (dimerisation) domain THIAE_01315 PF00682 HMGL-like THIAE_01325 PF00583 Acetyltransferase (GNAT) family THIAE_01330 PF00459 Inositol monophosphatase family THIAE_01335 PF00588 SpoU rRNA Methylase family THIAE_01340 PF00132 Bacterial transferase hexapeptide (six repeats) THIAE_01345 PF02082 Transcriptional regulator THIAE_01350 PF01521 Iron-sulphur cluster biosynthesis THIAE_01355 PF00334 Nucleoside diphosphate kinase THIAE_01360 PF04055 Radical SAM superfamily THIAE_01370 PF03129 Anticodon binding domain THIAE_01370 PF13393 Histidyl-tRNA synthetase THIAE_01380 PF01011 PQQ enzyme repeat THIAE_01380 PF13360 PQQ-like domain THIAE_01385 PF01926 50S ribosome-binding GTPase THIAE_01385 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THIAE_01390 PF01565 FAD binding domain THIAE_01390 PF02913 FAD linked oxidases, C-terminal domain THIAE_01395 PF00034 Cytochrome c THIAE_01400 PF00034 Cytochrome c THIAE_01410 PF03193 RsgA GTPase THIAE_01415 PF01329 Pterin 4 alpha carbinolamine dehydratase THIAE_01420 PF16491 CAAX prenyl protease N-terminal, five membrane helices THIAE_01420 PF01435 Peptidase family M48 THIAE_01425 PF00929 Exonuclease THIAE_01430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THIAE_01430 PF00205 Thiamine pyrophosphate enzyme, central domain THIAE_01430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THIAE_01435 PF10369 Small subunit of acetolactate synthase THIAE_01440 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain THIAE_01440 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain THIAE_01445 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THIAE_01445 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_01450 PF04898 Glutamate synthase central domain THIAE_01450 PF00310 Glutamine amidotransferases class-II THIAE_01450 PF01645 Conserved region in glutamate synthase THIAE_01450 PF01493 GXGXG motif THIAE_01455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THIAE_01455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain THIAE_01460 PF01676 Metalloenzyme superfamily THIAE_01460 PF06415 BPG-independent PGAM N-terminus (iPGM_N) THIAE_01465 PF00581 Rhodanese-like domain THIAE_01470 PF00462 Glutaredoxin THIAE_01475 PF02556 Preprotein translocase subunit SecB THIAE_01480 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THIAE_01480 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus THIAE_01485 PF00588 SpoU rRNA Methylase family THIAE_01490 PF01180 Dihydroorotate dehydrogenase THIAE_01495 PF01479 S4 domain THIAE_01495 PF00579 tRNA synthetases class I (W and Y) THIAE_01525 PF02237 Biotin protein ligase C terminal domain THIAE_01525 PF08279 HTH domain THIAE_01525 PF03099 Biotin/lipoate A/B protein ligase family THIAE_01530 PF03309 Type III pantothenate kinase THIAE_01540 PF07977 FabA-like domain THIAE_01545 PF02801 Beta-ketoacyl synthase, C-terminal domain THIAE_01545 PF00109 Beta-ketoacyl synthase, N-terminal domain THIAE_01560 PF00448 SRP54-type protein, GTPase domain THIAE_01560 PF02881 SRP54-type protein, helical bundle domain THIAE_01565 PF05193 Peptidase M16 inactive domain THIAE_01565 PF00675 Insulinase (Peptidase family M16) THIAE_01570 PF05193 Peptidase M16 inactive domain THIAE_01580 PF01467 Cytidylyltransferase-like THIAE_01595 PF04461 Protein of unknown function (DUF520) THIAE_01600 PF00696 Amino acid kinase family THIAE_01610 PF00300 Histidine phosphatase superfamily (branch 1) THIAE_01615 PF00156 Phosphoribosyl transferase domain THIAE_01625 PF00258 Flavodoxin THIAE_01625 PF00667 FAD binding domain THIAE_01625 PF00175 Oxidoreductase NAD-binding domain THIAE_01630 PF02541 Ppx/GppA phosphatase family THIAE_01635 PF17941 Polyphosphate kinase C-terminal domain 1 THIAE_01635 PF13090 Polyphosphate kinase C-terminal domain 2 THIAE_01635 PF02503 Polyphosphate kinase middle domain THIAE_01635 PF13089 Polyphosphate kinase N-terminal domain THIAE_01640 PF01594 AI-2E family transporter THIAE_01645 PF00692 dUTPase THIAE_01650 PF00689 Cation transporting ATPase, C-terminus THIAE_01650 PF00690 Cation transporter/ATPase, N-terminus THIAE_01660 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain THIAE_01660 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain THIAE_01660 PF06827 Zinc finger found in FPG and IleRS THIAE_01665 PF08338 Domain of unknown function (DUF1731) THIAE_01665 PF01370 NAD dependent epimerase/dehydratase family THIAE_01680 PF01597 Glycine cleavage H-protein THIAE_01685 PF10672 S-adenosylmethionine-dependent methyltransferase THIAE_01685 PF17785 PUA-like domain THIAE_01690 PF00171 Aldehyde dehydrogenase family THIAE_01695 PF01979 Amidohydrolase family THIAE_01700 PF11867 Domain of unknown function (DUF3387) THIAE_01700 PF18766 SWI2/SNF2 ATPase THIAE_01700 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) THIAE_01705 PF05016 ParE toxin of type II toxin-antitoxin system, parDE THIAE_01710 PF04221 RelB antitoxin THIAE_01720 PF01420 Type I restriction modification DNA specificity domain THIAE_01730 PF13749 Putative ATP-dependent DNA helicase recG C-terminal THIAE_01730 PF00270 DEAD/DEAH box helicase THIAE_01730 PF17191 RecG wedge domain THIAE_01735 PF02384 N-6 DNA Methylase THIAE_01740 PF01168 Alanine racemase, N-terminal domain THIAE_01745 PF03976 Polyphosphate kinase 2 (PPK2) THIAE_01755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_01755 PF02203 Tar ligand binding domain homologue THIAE_01755 PF00672 HAMP domain THIAE_01765 PF01979 Amidohydrolase family THIAE_01770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THIAE_01770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THIAE_01775 PF00156 Phosphoribosyl transferase domain THIAE_01780 PF03652 Holliday junction resolvase THIAE_01785 PF02622 Uncharacterized ACR, COG1678 THIAE_01790 PF02424 ApbE family THIAE_01795 PF02951 Prokaryotic glutathione synthetase, N-terminal domain THIAE_01795 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain THIAE_01800 PF14403 Circularly permuted ATP-grasp type 2 THIAE_01810 PF10005 zinc-ribbon domain THIAE_01810 PF15887 Putative zinc-binding metallo-peptidase THIAE_01815 PF03853 YjeF-related protein N-terminus THIAE_01815 PF01256 Carbohydrate kinase THIAE_01820 PF00471 Ribosomal protein L33 THIAE_01825 PF00830 Ribosomal L28 family THIAE_01830 PF04002 RadC-like JAB domain THIAE_01845 PF07021 Methionine biosynthesis protein MetW THIAE_01845 PF00561 alpha/beta hydrolase fold THIAE_01850 PF00561 alpha/beta hydrolase fold THIAE_01855 PF02325 YGGT family THIAE_01860 PF03807 NADP oxidoreductase coenzyme F420-dependent THIAE_01860 PF14748 Pyrroline-5-carboxylate reductase dimerisation THIAE_01865 PF01809 Putative membrane protein insertion efficiency factor THIAE_01870 PF02630 SCO1/SenC THIAE_01875 PF02203 Tar ligand binding domain homologue THIAE_01875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_01875 PF00672 HAMP domain THIAE_01880 PF02649 Type I GTP cyclohydrolase folE2 THIAE_01885 PF02492 CobW/HypB/UreG, nucleotide-binding domain THIAE_01885 PF07683 Cobalamin synthesis protein cobW C-terminal domain THIAE_01890 PF06039 Malate:quinone oxidoreductase (Mqo) THIAE_01900 PF00248 Aldo/keto reductase family THIAE_01910 PF08534 Redoxin THIAE_01925 PF00141 Peroxidase THIAE_01930 PF01433 Peptidase family M1 domain THIAE_01930 PF17432 Domain of unknown function (DUF3458_C) ARM repeats THIAE_01930 PF11940 Domain of unknown function (DUF3458) Ig-like fold THIAE_01950 PF00365 Phosphofructokinase THIAE_01955 PF00570 HRDC domain THIAE_01955 PF01612 3'-5' exonuclease THIAE_01965 PF08245 Mur ligase middle domain THIAE_01965 PF02875 Mur ligase family, glutamate ligase domain THIAE_01965 PF01225 Mur ligase family, catalytic domain THIAE_01975 PF00593 TonB dependent receptor THIAE_01975 PF07715 TonB-dependent Receptor Plug Domain THIAE_01980 PF03109 ABC1 family THIAE_01990 PF01209 ubiE/COQ5 methyltransferase family THIAE_02010 PF00004 ATPase family associated with various cellular activities (AAA) THIAE_02010 PF07724 AAA domain (Cdc48 subfamily) THIAE_02015 PF00586 AIR synthase related protein, N-terminal domain THIAE_02015 PF02769 AIR synthase related protein, C-terminal domain THIAE_02025 PF01678 Diaminopimelate epimerase THIAE_02035 PF02899 Phage integrase, N-terminal SAM-like domain THIAE_02035 PF00589 Phage integrase family THIAE_02040 PF00227 Proteasome subunit THIAE_02045 PF10119 Predicted methyltransferase regulatory domain THIAE_02045 PF13847 Methyltransferase domain THIAE_02055 PF07724 AAA domain (Cdc48 subfamily) THIAE_02055 PF17871 AAA lid domain THIAE_02055 PF10431 C-terminal, D2-small domain, of ClpB protein THIAE_02055 PF00004 ATPase family associated with various cellular activities (AAA) THIAE_02055 PF02861 Clp amino terminal domain, pathogenicity island component THIAE_02060 PF08448 PAS fold THIAE_02060 PF00990 Diguanylate cyclase, GGDEF domain THIAE_02070 PF05170 AsmA family THIAE_02075 PF00561 alpha/beta hydrolase fold THIAE_02090 PF00512 His Kinase A (phospho-acceptor) domain THIAE_02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_02090 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_02090 PF00072 Response regulator receiver domain THIAE_02090 PF00672 HAMP domain THIAE_02090 PF01627 Hpt domain THIAE_02100 PF01565 FAD binding domain THIAE_02100 PF02913 FAD linked oxidases, C-terminal domain THIAE_02105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THIAE_02105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THIAE_02105 PF01842 ACT domain THIAE_02110 PF08543 Phosphomethylpyrimidine kinase THIAE_02115 PF02581 Thiamine monophosphate synthase THIAE_02125 PF03109 ABC1 family THIAE_02160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_02160 PF08447 PAS fold THIAE_02160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_02160 PF08447 PAS fold THIAE_02165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_02165 PF00072 Response regulator receiver domain THIAE_02170 PF00216 Bacterial DNA-binding protein THIAE_02175 PF00578 AhpC/TSA family THIAE_02185 PF00924 Mechanosensitive ion channel THIAE_02190 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THIAE_02190 PF02896 PEP-utilising enzyme, TIM barrel domain THIAE_02190 PF00391 PEP-utilising enzyme, mobile domain THIAE_02195 PF01938 TRAM domain THIAE_02195 PF00919 Uncharacterized protein family UPF0004 THIAE_02195 PF04055 Radical SAM superfamily THIAE_02200 PF02562 PhoH-like protein THIAE_02205 PF02130 Uncharacterized protein family UPF0054 THIAE_02210 PF00571 CBS domain THIAE_02210 PF03471 Transporter associated domain THIAE_02215 PF00795 Carbon-nitrogen hydrolase THIAE_02220 PF00120 Glutamine synthetase, catalytic domain THIAE_02220 PF03951 Glutamine synthetase, beta-Grasp domain THIAE_02225 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_02230 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_02235 PF00005 ABC transporter THIAE_02240 PF01895 PhoU domain THIAE_02245 PF00072 Response regulator receiver domain THIAE_02245 PF00486 Transcriptional regulatory protein, C terminal THIAE_02250 PF00989 PAS fold THIAE_02250 PF11808 Phosphate regulon sensor protein PhoR THIAE_02250 PF00512 His Kinase A (phospho-acceptor) domain THIAE_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_02255 PF12849 PBP superfamily domain THIAE_02270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_02270 PF00672 HAMP domain THIAE_02270 PF02203 Tar ligand binding domain homologue THIAE_02280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THIAE_02280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THIAE_02280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THIAE_02285 PF00267 Gram-negative porin THIAE_02290 PF09820 Predicted AAA-ATPase THIAE_02290 PF08011 PD-(D/E)XK nuclease superfamily THIAE_02295 PF02417 Chromate transporter THIAE_02305 PF01722 BolA-like protein THIAE_02320 PF00149 Calcineurin-like phosphoesterase THIAE_02325 PF00398 Ribosomal RNA adenine dimethylase THIAE_02330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA THIAE_02335 PF00639 PPIC-type PPIASE domain THIAE_02335 PF09312 SurA N-terminal domain THIAE_02335 PF00639 PPIC-type PPIASE domain THIAE_02335 PF09312 SurA N-terminal domain THIAE_02340 PF04453 LPS transport system D THIAE_02345 PF01636 Phosphotransferase enzyme family THIAE_02350 PF00483 Nucleotidyl transferase THIAE_02360 PF03883 Peroxide stress protein YaaA THIAE_02365 PF03707 Bacterial signalling protein N terminal repeat THIAE_02365 PF00990 Diguanylate cyclase, GGDEF domain THIAE_02365 PF00563 EAL domain THIAE_02370 PF08448 PAS fold THIAE_02370 PF01339 CheB methylesterase THIAE_02370 PF03705 CheR methyltransferase, all-alpha domain THIAE_02370 PF01739 CheR methyltransferase, SAM binding domain THIAE_02390 PF01430 Hsp33 protein THIAE_02395 PF04055 Radical SAM superfamily THIAE_02395 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family THIAE_02400 PF03099 Biotin/lipoate A/B protein ligase family THIAE_02405 PF04359 Protein of unknown function (DUF493) THIAE_02410 PF01063 Amino-transferase class IV THIAE_02415 PF07943 Penicillin-binding protein 5, C-terminal domain THIAE_02415 PF00768 D-alanyl-D-alanine carboxypeptidase THIAE_02420 PF01098 Cell cycle protein THIAE_02425 PF00905 Penicillin binding protein transpeptidase domain THIAE_02425 PF03717 Penicillin-binding Protein dimerisation domain THIAE_02430 PF04093 rod shape-determining protein MreD THIAE_02435 PF04085 rod shape-determining protein MreC THIAE_02445 PF02686 Glu-tRNAGln amidotransferase C subunit THIAE_02450 PF01425 Amidase THIAE_02455 PF02934 GatB/GatE catalytic domain THIAE_02455 PF02637 GatB domain THIAE_02460 PF01435 Peptidase family M48 THIAE_02465 PF02657 Fe-S metabolism associated domain THIAE_02470 PF12626 Polymerase A arginine-rich C-terminus THIAE_02470 PF01743 Poly A polymerase head domain THIAE_02470 PF12627 Probable RNA and SrmB- binding site of polymerase A THIAE_02475 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THIAE_02480 PF02548 Ketopantoate hydroxymethyltransferase THIAE_02485 PF02569 Pantoate-beta-alanine ligase THIAE_02490 PF02261 Aspartate decarboxylase THIAE_02495 PF00311 Phosphoenolpyruvate carboxylase THIAE_02500 PF00719 Inorganic pyrophosphatase THIAE_02505 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain THIAE_02510 PF01464 Transglycosylase SLT domain THIAE_02510 PF00497 Bacterial extracellular solute-binding proteins, family 3 THIAE_02515 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_02515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THIAE_02520 PF08461 Ribonuclease R winged-helix domain THIAE_02520 PF00575 S1 RNA binding domain THIAE_02520 PF00773 RNB domain THIAE_02520 PF08206 Ribonuclease B OB domain THIAE_02520 PF17876 Cold shock domain THIAE_02525 PF08032 RNA 2'-O ribose methyltransferase substrate binding THIAE_02525 PF00588 SpoU rRNA Methylase family THIAE_02530 PF00294 pfkB family carbohydrate kinase THIAE_02535 PF01384 Phosphate transporter family THIAE_02540 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ THIAE_02565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THIAE_02570 PF00361 Proton-conducting membrane transporter THIAE_02575 PF00361 Proton-conducting membrane transporter THIAE_02580 PF00271 Helicase conserved C-terminal domain THIAE_02580 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) THIAE_02580 PF08463 EcoEI R protein C-terminal THIAE_02580 PF04851 Type III restriction enzyme, res subunit THIAE_02585 PF06250 YhcG PDDEXK nuclease domain THIAE_02585 PF17761 DUF1016 N-terminal domain THIAE_02595 PF12161 HsdM N-terminal domain THIAE_02595 PF02384 N-6 DNA Methylase THIAE_02635 PF07995 Glucose / Sorbosone dehydrogenase THIAE_02650 PF00581 Rhodanese-like domain THIAE_02650 PF00753 Metallo-beta-lactamase superfamily THIAE_02665 PF07726 ATPase family associated with various cellular activities (AAA) THIAE_02665 PF17863 AAA lid domain THIAE_02695 PF00361 Proton-conducting membrane transporter THIAE_02715 PF01145 SPFH domain / Band 7 family THIAE_02715 PF16200 C-terminal region of band_7 THIAE_02740 PF08447 PAS fold THIAE_02740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_02740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_02740 PF08447 PAS fold THIAE_02745 PF00497 Bacterial extracellular solute-binding proteins, family 3 THIAE_02745 PF00072 Response regulator receiver domain THIAE_02745 PF00512 His Kinase A (phospho-acceptor) domain THIAE_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_02750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_02750 PF02203 Tar ligand binding domain homologue THIAE_02750 PF00672 HAMP domain THIAE_02760 PF01627 Hpt domain THIAE_02760 PF00072 Response regulator receiver domain THIAE_02760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_02760 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_02760 PF00672 HAMP domain THIAE_02760 PF00512 His Kinase A (phospho-acceptor) domain THIAE_02775 PF01627 Hpt domain THIAE_02775 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_02775 PF00072 Response regulator receiver domain THIAE_02775 PF00672 HAMP domain THIAE_02775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_02775 PF00512 His Kinase A (phospho-acceptor) domain THIAE_02780 PF01627 Hpt domain THIAE_02780 PF17149 Periplasmic sensor domain found in signal transduction proteins THIAE_02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_02780 PF00072 Response regulator receiver domain THIAE_02780 PF00672 HAMP domain THIAE_02780 PF00512 His Kinase A (phospho-acceptor) domain THIAE_02810 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THIAE_02815 PF10518 TAT (twin-arginine translocation) pathway signal sequence THIAE_02815 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THIAE_02815 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_02840 PF01979 Amidohydrolase family THIAE_02845 PF03466 LysR substrate binding domain THIAE_02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIAE_02860 PF00872 Transposase, Mutator family THIAE_02875 PF04542 Sigma-70 region 2 THIAE_02875 PF08281 Sigma-70, region 4 THIAE_02880 PF00268 Ribonucleotide reductase, small chain THIAE_02885 PF03477 ATP cone domain THIAE_02885 PF00317 Ribonucleotide reductase, all-alpha domain THIAE_02885 PF02867 Ribonucleotide reductase, barrel domain THIAE_02895 PF00990 Diguanylate cyclase, GGDEF domain THIAE_02895 PF17158 Membrane-associated sensor, integral membrane domain THIAE_02910 PF03702 Anhydro-N-acetylmuramic acid kinase THIAE_02915 PF01551 Peptidase family M23 THIAE_02915 PF04225 Opacity-associated protein A LysM-like domain THIAE_02920 PF01206 Sulfurtransferase TusA THIAE_02925 PF02091 Glycyl-tRNA synthetase alpha subunit THIAE_02930 PF02092 Glycyl-tRNA synthetase beta subunit THIAE_02930 PF05746 DALR anticodon binding domain THIAE_02945 PF01618 MotA/TolQ/ExbB proton channel family THIAE_02955 PF13677 Membrane MotB of proton-channel complex MotA/MotB THIAE_02955 PF00691 OmpA family THIAE_02960 PF03167 Uracil DNA glycosylase superfamily THIAE_02965 PF01243 Pyridoxamine 5'-phosphate oxidase THIAE_02965 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region THIAE_02970 PF01751 Toprim domain THIAE_02970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_02970 PF00986 DNA gyrase B subunit, carboxyl terminus THIAE_02970 PF00204 DNA gyrase B THIAE_02980 PF00205 Thiamine pyrophosphate enzyme, central domain THIAE_02980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THIAE_02980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THIAE_02985 PF03023 Lipid II flippase MurJ THIAE_02990 PF01687 Riboflavin kinase THIAE_02990 PF06574 FAD synthetase THIAE_02995 PF08264 Anticodon-binding domain of tRNA THIAE_02995 PF06827 Zinc finger found in FPG and IleRS THIAE_02995 PF00133 tRNA synthetases class I (I, L, M and V) THIAE_03000 PF01252 Signal peptidase (SPase) II THIAE_03005 PF13185 GAF domain THIAE_03005 PF00990 Diguanylate cyclase, GGDEF domain THIAE_03010 PF00873 AcrB/AcrD/AcrF family THIAE_03020 PF13406 Transglycosylase SLT domain THIAE_03025 PF01170 Putative RNA methylase family UPF0020 THIAE_03025 PF02926 THUMP domain THIAE_03025 PF10672 S-adenosylmethionine-dependent methyltransferase THIAE_03030 PF00990 Diguanylate cyclase, GGDEF domain THIAE_03030 PF03707 Bacterial signalling protein N terminal repeat THIAE_03030 PF00563 EAL domain THIAE_03035 PF04055 Radical SAM superfamily THIAE_03035 PF06969 HemN C-terminal domain THIAE_03045 PF00437 Type II/IV secretion system protein THIAE_03050 PF00482 Type II secretion system (T2SS), protein F THIAE_03070 PF01812 5-formyltetrahydrofolate cyclo-ligase family THIAE_03095 PF00557 Metallopeptidase family M24 THIAE_03095 PF05195 Aminopeptidase P, N-terminal domain THIAE_03100 PF01494 FAD binding domain THIAE_03105 PF01494 FAD binding domain THIAE_03110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIAE_03110 PF03466 LysR substrate binding domain THIAE_03125 PF12111 Polyribonucleotide phosphorylase C terminal THIAE_03125 PF00575 S1 RNA binding domain THIAE_03125 PF10150 Ribonuclease E/G family THIAE_03130 PF01479 S4 domain THIAE_03130 PF00849 RNA pseudouridylate synthase THIAE_03135 PF13419 Haloacid dehalogenase-like hydrolase THIAE_03140 PF02545 Maf-like protein THIAE_03145 PF02620 Large ribosomal RNA subunit accumulation protein YceD THIAE_03150 PF01783 Ribosomal L32p protein family THIAE_03155 PF02504 Fatty acid synthesis protein THIAE_03160 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal THIAE_03160 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III THIAE_03165 PF00698 Acyl transferase domain THIAE_03175 PF00550 Phosphopantetheine attachment site THIAE_03180 PF02801 Beta-ketoacyl synthase, C-terminal domain THIAE_03180 PF00109 Beta-ketoacyl synthase, N-terminal domain THIAE_03185 PF00425 chorismate binding enzyme THIAE_03185 PF04715 Anthranilate synthase component I, N terminal region THIAE_03190 PF01063 Amino-transferase class IV THIAE_03195 PF02618 YceG-like family THIAE_03200 PF02223 Thymidylate kinase THIAE_03205 PF09115 DNA polymerase III, delta subunit, C terminal THIAE_03210 PF01026 TatD related DNase THIAE_03215 PF00005 ABC transporter THIAE_03215 PF00664 ABC transporter transmembrane region THIAE_03240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THIAE_03250 PF00549 CoA-ligase THIAE_03250 PF08442 ATP-grasp domain THIAE_03255 PF00549 CoA-ligase THIAE_03255 PF02629 CoA binding domain THIAE_03260 PF02540 NAD synthase THIAE_03260 PF00795 Carbon-nitrogen hydrolase THIAE_03270 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_03275 PF12911 N-terminal TM domain of oligopeptide transport permease C THIAE_03275 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_03280 PF00933 Glycosyl hydrolase family 3 N terminal domain THIAE_03285 PF01565 FAD binding domain THIAE_03285 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THIAE_03290 PF00209 Sodium:neurotransmitter symporter family THIAE_03305 PF01546 Peptidase family M20/M25/M40 THIAE_03305 PF07687 Peptidase dimerisation domain THIAE_03310 PF03960 ArsC family THIAE_03315 PF14602 Hexapeptide repeat of succinyl-transferase THIAE_03315 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal THIAE_03315 PF00132 Bacterial transferase hexapeptide (six repeats) THIAE_03330 PF00919 Uncharacterized protein family UPF0004 THIAE_03330 PF04055 Radical SAM superfamily THIAE_03330 PF18693 TRAM domain THIAE_03350 PF12838 4Fe-4S dicluster domain THIAE_03355 PF00043 Glutathione S-transferase, C-terminal domain THIAE_03355 PF02798 Glutathione S-transferase, N-terminal domain THIAE_03360 PF04356 Protein of unknown function (DUF489) THIAE_03370 PF00849 RNA pseudouridylate synthase THIAE_03375 PF00226 DnaJ domain THIAE_03375 PF01556 DnaJ C terminal domain THIAE_03380 PF02617 ATP-dependent Clp protease adaptor protein ClpS THIAE_03385 PF07724 AAA domain (Cdc48 subfamily) THIAE_03385 PF00004 ATPase family associated with various cellular activities (AAA) THIAE_03385 PF17871 AAA lid domain THIAE_03385 PF10431 C-terminal, D2-small domain, of ClpB protein THIAE_03385 PF02861 Clp amino terminal domain, pathogenicity island component THIAE_03390 PF00581 Rhodanese-like domain THIAE_03395 PF00291 Pyridoxal-phosphate dependent enzyme THIAE_03400 PF13654 AAA domain THIAE_03400 PF05362 Lon protease (S16) C-terminal proteolytic domain THIAE_03410 PF03772 Competence protein THIAE_03410 PF00753 Metallo-beta-lactamase superfamily THIAE_03425 PF07556 Protein of unknown function (DUF1538) THIAE_03430 PF00689 Cation transporting ATPase, C-terminus THIAE_03430 PF00690 Cation transporter/ATPase, N-terminus THIAE_03435 PF00999 Sodium/hydrogen exchanger family THIAE_03435 PF02080 TrkA-C domain THIAE_03435 PF02254 TrkA-N domain THIAE_03440 PF02606 Tetraacyldisaccharide-1-P 4'-kinase THIAE_03445 PF03966 Trm112p-like protein THIAE_03450 PF02348 Cytidylyltransferase THIAE_03460 PF05728 Uncharacterised protein family (UPF0227) THIAE_03465 PF05209 Septum formation inhibitor MinC, N-terminal domain THIAE_03465 PF03775 Septum formation inhibitor MinC, C-terminal domain THIAE_03470 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THIAE_03475 PF03776 Septum formation topological specificity factor MinE THIAE_03485 PF00270 DEAD/DEAH box helicase THIAE_03485 PF17757 UvrB interaction domain THIAE_03485 PF02559 CarD-like/TRCF domain THIAE_03485 PF03461 TRCF domain THIAE_03485 PF00271 Helicase conserved C-terminal domain THIAE_03490 PF03458 UPF0126 domain THIAE_03495 PF12704 MacB-like periplasmic core domain THIAE_03495 PF02687 FtsX-like permease family THIAE_03500 PF00005 ABC transporter THIAE_03505 PF00005 ABC transporter THIAE_03505 PF12848 ABC transporter THIAE_03520 PF01739 CheR methyltransferase, SAM binding domain THIAE_03520 PF03705 CheR methyltransferase, all-alpha domain THIAE_03525 PF00072 Response regulator receiver domain THIAE_03525 PF01339 CheB methylesterase THIAE_03530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_03530 PF02743 Cache domain THIAE_03530 PF00672 HAMP domain THIAE_03535 PF00270 DEAD/DEAH box helicase THIAE_03535 PF00271 Helicase conserved C-terminal domain THIAE_03535 PF03880 DbpA RNA binding domain THIAE_03545 PF01784 NIF3 (NGG1p interacting factor 3) THIAE_03555 PF02630 SCO1/SenC THIAE_03565 PF00291 Pyridoxal-phosphate dependent enzyme THIAE_03565 PF00585 C-terminal regulatory domain of Threonine dehydratase THIAE_03575 PF00005 ABC transporter THIAE_03580 PF13472 GDSL-like Lipase/Acylhydrolase family THIAE_03585 PF01668 SmpB protein THIAE_03590 PF03364 Polyketide cyclase / dehydrase and lipid transport THIAE_03595 PF03658 RnfH family Ubiquitin THIAE_03600 PF04355 SmpA / OmlA family THIAE_03605 PF01475 Ferric uptake regulator family THIAE_03610 PF02463 RecF/RecN/SMC N terminal domain THIAE_03615 PF01513 ATP-NAD kinase THIAE_03620 PF01025 GrpE THIAE_03625 PF00012 Hsp70 protein THIAE_03630 PF00226 DnaJ domain THIAE_03630 PF01556 DnaJ C terminal domain THIAE_03630 PF00684 DnaJ central domain THIAE_03635 PF01113 Dihydrodipicolinate reductase, N-terminus THIAE_03635 PF05173 Dihydrodipicolinate reductase, C-terminus THIAE_03640 PF00117 Glutamine amidotransferase class-I THIAE_03640 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain THIAE_03645 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain THIAE_03645 PF02142 MGS-like domain THIAE_03645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THIAE_03650 PF01272 Transcription elongation factor, GreA/GreB, C-term THIAE_03650 PF03449 Transcription elongation factor, N-terminal THIAE_03660 PF04305 Protein of unknown function (DUF455) THIAE_03665 PF00480 ROK family THIAE_03675 PF00085 Thioredoxin THIAE_03680 PF00206 Lyase THIAE_03680 PF10415 Fumarase C C-terminus THIAE_03685 PF00072 Response regulator receiver domain THIAE_03685 PF00196 Bacterial regulatory proteins, luxR family THIAE_03695 PF00990 Diguanylate cyclase, GGDEF domain THIAE_03700 PF12848 ABC transporter THIAE_03700 PF00005 ABC transporter THIAE_03705 PF00464 Serine hydroxymethyltransferase THIAE_03710 PF03477 ATP cone domain THIAE_03715 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THIAE_03715 PF01872 RibD C-terminal domain THIAE_03720 PF00677 Lumazine binding domain THIAE_03725 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THIAE_03725 PF00925 GTP cyclohydrolase II THIAE_03730 PF00885 6,7-dimethyl-8-ribityllumazine synthase THIAE_03735 PF01029 NusB family THIAE_03740 PF00586 AIR synthase related protein, N-terminal domain THIAE_03740 PF02769 AIR synthase related protein, C-terminal domain THIAE_03745 PF00793 DAHP synthetase I family THIAE_03755 PF06750 Bacterial Peptidase A24 N-terminal domain THIAE_03755 PF01478 Type IV leader peptidase family THIAE_03760 PF01242 6-pyruvoyl tetrahydropterin synthase THIAE_03765 PF00348 Polyprenyl synthetase THIAE_03770 PF00106 short chain dehydrogenase THIAE_03780 PF00152 tRNA synthetases class II (D, K and N) THIAE_03780 PF02938 GAD domain THIAE_03780 PF01336 OB-fold nucleic acid binding domain THIAE_03785 PF02445 Quinolinate synthetase A protein THIAE_03790 PF01709 Transcriptional regulator THIAE_03795 PF02075 Crossover junction endodeoxyribonuclease RuvC THIAE_03800 PF07499 RuvA, C-terminal domain THIAE_03800 PF01330 RuvA N terminal domain THIAE_03805 PF05491 RuvB C-terminal winged helix domain THIAE_03805 PF17864 RuvB AAA lid domain THIAE_03805 PF05496 Holliday junction DNA helicase RuvB P-loop domain THIAE_03810 PF01618 MotA/TolQ/ExbB proton channel family THIAE_03815 PF02472 Biopolymer transport protein ExbD/TolR THIAE_03825 PF07676 WD40-like Beta Propeller Repeat THIAE_03825 PF04052 TolB amino-terminal domain THIAE_03830 PF00691 OmpA family THIAE_03840 PF06508 Queuosine biosynthesis protein QueC THIAE_03860 PF01571 Aminomethyltransferase folate-binding domain THIAE_03865 PF01584 CheW-like domain THIAE_03870 PF02696 Uncharacterized ACR, YdiU/UPF0061 family THIAE_03880 PF01625 Peptide methionine sulfoxide reductase THIAE_03885 PF00460 Flagella basal body rod protein THIAE_03890 PF00460 Flagella basal body rod protein THIAE_03890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIAE_03900 PF07559 Flagellar basal body protein FlaE THIAE_03900 PF07196 Flagellin hook IN motif THIAE_03900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIAE_03900 PF00460 Flagella basal body rod protein THIAE_03910 PF02547 Queuosine biosynthesis protein THIAE_03915 PF01702 Queuine tRNA-ribosyltransferase THIAE_03920 PF02699 Preprotein translocase subunit THIAE_03925 PF13721 SecD export protein N-terminal TM region THIAE_03925 PF02355 Protein export membrane protein THIAE_03925 PF07549 SecD/SecF GG Motif THIAE_03930 PF07549 SecD/SecF GG Motif THIAE_03930 PF02355 Protein export membrane protein THIAE_03935 PF03144 Elongation factor Tu domain 2 THIAE_03935 PF16658 Class II release factor RF3, C-terminal domain THIAE_03935 PF00009 Elongation factor Tu GTP binding domain THIAE_03945 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_03950 PF17854 FtsK alpha domain THIAE_03950 PF13491 4TM region of DNA translocase FtsK/SpoIIIE THIAE_03950 PF09397 Ftsk gamma domain THIAE_03950 PF01580 FtsK/SpoIIIE family THIAE_03955 PF03548 Outer membrane lipoprotein carrier protein LolA THIAE_03960 PF16193 AAA C-terminal domain THIAE_03960 PF12002 MgsA AAA+ ATPase C terminal THIAE_03960 PF00004 ATPase family associated with various cellular activities (AAA) THIAE_03965 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THIAE_03970 PF02403 Seryl-tRNA synthetase N-terminal domain THIAE_03970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THIAE_03980 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase THIAE_03985 PF04321 RmlD substrate binding domain THIAE_04005 PF08335 GlnD PII-uridylyltransferase THIAE_04005 PF01909 Nucleotidyltransferase domain THIAE_04005 PF01966 HD domain THIAE_04010 PF00557 Metallopeptidase family M24 THIAE_04015 PF00318 Ribosomal protein S2 THIAE_04020 PF00889 Elongation factor TS THIAE_04025 PF00696 Amino acid kinase family THIAE_04030 PF01765 Ribosome recycling factor THIAE_04035 PF01255 Putative undecaprenyl diphosphate synthase THIAE_04045 PF02163 Peptidase family M50 THIAE_04045 PF17820 PDZ domain THIAE_04045 PF13180 PDZ domain THIAE_04050 PF07244 Surface antigen variable number repeat THIAE_04050 PF01103 Surface antigen THIAE_04055 PF03938 Outer membrane protein (OmpH-like) THIAE_04060 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD THIAE_04060 PF00132 Bacterial transferase hexapeptide (six repeats) THIAE_04065 PF07977 FabA-like domain THIAE_04070 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 THIAE_04070 PF00132 Bacterial transferase hexapeptide (six repeats) THIAE_04075 PF02684 Lipid-A-disaccharide synthetase THIAE_04080 PF01351 Ribonuclease HII THIAE_04085 PF00072 Response regulator receiver domain THIAE_04085 PF01584 CheW-like domain THIAE_04090 PF00444 Ribosomal protein L36 THIAE_04095 PF13307 Helicase C-terminal domain THIAE_04095 PF06733 DEAD_2 THIAE_04100 PF00814 Glycoprotease family THIAE_04105 PF00582 Universal stress protein family THIAE_04115 PF01926 50S ribosome-binding GTPase THIAE_04130 PF00005 ABC transporter THIAE_04130 PF00664 ABC transporter transmembrane region THIAE_04145 PF01370 NAD dependent epimerase/dehydratase family THIAE_04160 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THIAE_04175 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THIAE_04205 PF13683 Integrase core domain THIAE_04235 PF01370 NAD dependent epimerase/dehydratase family THIAE_04240 PF00270 DEAD/DEAH box helicase THIAE_04240 PF13749 Putative ATP-dependent DNA helicase recG C-terminal THIAE_04240 PF17191 RecG wedge domain THIAE_04245 PF16363 GDP-mannose 4,6 dehydratase THIAE_04255 PF00483 Nucleotidyl transferase THIAE_04260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THIAE_04305 PF01527 Transposase THIAE_04310 PF13683 Integrase core domain THIAE_04310 PF13276 HTH-like domain THIAE_04360 PF00535 Glycosyl transferase family 2 THIAE_04370 PF00534 Glycosyl transferases group 1 THIAE_04385 PF00535 Glycosyl transferase family 2 THIAE_04390 PF16363 GDP-mannose 4,6 dehydratase THIAE_04440 PF02397 Bacterial sugar transferase THIAE_04450 PF16363 GDP-mannose 4,6 dehydratase THIAE_04455 PF00563 EAL domain THIAE_04455 PF03707 Bacterial signalling protein N terminal repeat THIAE_04455 PF00990 Diguanylate cyclase, GGDEF domain THIAE_04460 PF02910 Fumarate reductase flavoprotein C-term THIAE_04460 PF00890 FAD binding domain THIAE_04470 PF13180 PDZ domain THIAE_04475 PF06421 GTP-binding protein LepA C-terminus THIAE_04475 PF03144 Elongation factor Tu domain 2 THIAE_04475 PF00009 Elongation factor Tu GTP binding domain THIAE_04475 PF00679 Elongation factor G C-terminus THIAE_04480 PF10502 Signal peptidase, peptidase S26 THIAE_04485 PF14622 Ribonuclease-III-like THIAE_04485 PF00035 Double-stranded RNA binding motif THIAE_04490 PF01926 50S ribosome-binding GTPase THIAE_04490 PF07650 KH domain THIAE_04495 PF02565 Recombination protein O C terminal THIAE_04495 PF11967 Recombination protein O N terminal THIAE_04500 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ THIAE_04505 PF01648 4'-phosphopantetheinyl transferase superfamily THIAE_04510 PF01176 Translation initiation factor 1A / IF-1 THIAE_04520 PF13085 2Fe-2S iron-sulfur cluster binding domain THIAE_04525 PF00890 FAD binding domain THIAE_04525 PF02910 Fumarate reductase flavoprotein C-term THIAE_04540 PF03588 Leucyl/phenylalanyl-tRNA protein transferase THIAE_04545 PF14579 Helix-hairpin-helix motif THIAE_04545 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THIAE_04545 PF07733 Bacterial DNA polymerase III alpha NTPase domain THIAE_04545 PF01336 OB-fold nucleic acid binding domain THIAE_04545 PF02811 PHP domain THIAE_04550 PF16177 Acetyl-coenzyme A synthetase N-terminus THIAE_04550 PF00501 AMP-binding enzyme THIAE_04550 PF13193 AMP-binding enzyme C-terminal domain THIAE_04565 PF00474 Sodium:solute symporter family THIAE_04580 PF02576 RimP N-terminal domain THIAE_04580 PF17384 RimP C-terminal SH3 domain THIAE_04585 PF13184 NusA-like KH domain THIAE_04585 PF08529 NusA N-terminal domain THIAE_04590 PF08364 Bacterial translation initiation factor IF-2 associated region THIAE_04590 PF04760 Translation initiation factor IF-2, N-terminal region THIAE_04590 PF00009 Elongation factor Tu GTP binding domain THIAE_04590 PF11987 Translation-initiation factor 2 THIAE_04595 PF02033 Ribosome-binding factor A THIAE_04600 PF16198 tRNA pseudouridylate synthase B C-terminal domain THIAE_04600 PF09157 Pseudouridine synthase II TruB, C-terminal THIAE_04600 PF01509 TruB family pseudouridylate synthase (N terminal domain) THIAE_04615 PF00312 Ribosomal protein S15 THIAE_04620 PF03725 3' exoribonuclease family, domain 2 THIAE_04620 PF00575 S1 RNA binding domain THIAE_04620 PF01138 3' exoribonuclease family, domain 1 THIAE_04620 PF00013 KH domain THIAE_04620 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THIAE_04625 PF08367 Peptidase M16C associated THIAE_04625 PF05193 Peptidase M16 inactive domain THIAE_04625 PF00675 Insulinase (Peptidase family M16) THIAE_04640 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_04645 PF12911 N-terminal TM domain of oligopeptide transport permease C THIAE_04645 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_04675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THIAE_04675 PF00005 ABC transporter THIAE_04690 PF12843 Putative quorum-sensing-regulated virulence factor THIAE_04700 PF05016 ParE toxin of type II toxin-antitoxin system, parDE THIAE_04720 PF08207 Elongation factor P (EF-P) KOW-like domain THIAE_04720 PF09285 Elongation factor P, C-terminal THIAE_04720 PF01132 Elongation factor P (EF-P) OB domain THIAE_04730 PF13438 Domain of unknown function (DUF4113) THIAE_04730 PF00817 impB/mucB/samB family THIAE_04730 PF11799 impB/mucB/samB family C-terminal domain THIAE_04730 PF11798 IMS family HHH motif THIAE_04735 PF01541 GIY-YIG catalytic domain THIAE_04735 PF00929 Exonuclease THIAE_04740 PF01726 LexA DNA binding domain THIAE_04740 PF00717 Peptidase S24-like THIAE_04755 PF00072 Response regulator receiver domain THIAE_04760 PF02562 PhoH-like protein THIAE_04760 PF13638 PIN domain THIAE_04765 PF00578 AhpC/TSA family THIAE_04770 PF00701 Dihydrodipicolinate synthetase family THIAE_04780 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal THIAE_04780 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain THIAE_04780 PF02769 AIR synthase related protein, C-terminal domain THIAE_04790 PF01740 STAS domain THIAE_04790 PF00916 Sulfate permease family THIAE_04805 PF00472 RF-1 domain THIAE_04805 PF03462 PCRF domain THIAE_04810 PF00152 tRNA synthetases class II (D, K and N) THIAE_04810 PF01336 OB-fold nucleic acid binding domain THIAE_04815 PF09371 Tex-like protein N-terminal domain THIAE_04815 PF00575 S1 RNA binding domain THIAE_04815 PF17674 HHH domain THIAE_04815 PF16921 Tex protein YqgF-like domain THIAE_04835 PF01402 Ribbon-helix-helix protein, copG family THIAE_04855 PF13419 Haloacid dehalogenase-like hydrolase THIAE_04865 PF03989 DNA gyrase C-terminal domain, beta-propeller THIAE_04865 PF00521 DNA gyrase/topoisomerase IV, subunit A THIAE_04870 PF00266 Aminotransferase class-V THIAE_04875 PF01817 Chorismate mutase type II THIAE_04875 PF01842 ACT domain THIAE_04875 PF00800 Prephenate dehydratase THIAE_04880 PF00155 Aminotransferase class I and II THIAE_04885 PF02153 Prephenate dehydrogenase THIAE_04885 PF01842 ACT domain THIAE_04890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THIAE_04895 PF02224 Cytidylate kinase THIAE_04900 PF00575 S1 RNA binding domain THIAE_04905 PF00216 Bacterial DNA-binding protein THIAE_04915 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family THIAE_04920 PF01250 Ribosomal protein S6 THIAE_04925 PF01084 Ribosomal protein S18 THIAE_04935 PF01281 Ribosomal protein L9, N-terminal domain THIAE_04935 PF03948 Ribosomal protein L9, C-terminal domain THIAE_04940 PF03796 DnaB-like helicase C terminal domain THIAE_04940 PF00772 DnaB-like helicase N terminal domain THIAE_04945 PF01168 Alanine racemase, N-terminal domain THIAE_04945 PF00842 Alanine racemase, C-terminal domain THIAE_04950 PF00293 NUDIX domain THIAE_04960 PF01554 MatE THIAE_04980 PF00072 Response regulator receiver domain THIAE_04990 PF04552 Sigma-54, DNA binding domain THIAE_04990 PF00309 Sigma-54 factor, Activator interacting domain (AID) THIAE_04990 PF04963 Sigma-54 factor, core binding domain THIAE_05005 PF13742 OB-fold nucleic acid binding domain THIAE_05005 PF02601 Exonuclease VII, large subunit THIAE_05005 PF13742 OB-fold nucleic acid binding domain THIAE_05005 PF02601 Exonuclease VII, large subunit THIAE_05010 PF01207 Dihydrouridine synthase (Dus) THIAE_05020 PF12706 Beta-lactamase superfamily domain THIAE_05020 PF17770 Ribonuclease J C-terminal domain THIAE_05020 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain THIAE_05025 PF00667 FAD binding domain THIAE_05025 PF00258 Flavodoxin THIAE_05025 PF00175 Oxidoreductase NAD-binding domain THIAE_05030 PF05231 MASE1 THIAE_05030 PF00563 EAL domain THIAE_05035 PF12804 MobA-like NTP transferase domain THIAE_05040 PF03454 MoeA C-terminal region (domain IV) THIAE_05040 PF03453 MoeA N-terminal region (domain I and II) THIAE_05040 PF00994 Probable molybdopterin binding domain THIAE_05045 PF00591 Glycosyl transferase family, a/b domain THIAE_05045 PF02885 Glycosyl transferase family, helical bundle domain THIAE_05050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIAE_05050 PF14824 Sirohaem biosynthesis protein central THIAE_05050 PF10414 Sirohaem synthase dimerisation region THIAE_05055 PF01568 Molydopterin dinucleotide binding domain THIAE_05055 PF04324 BFD-like [2Fe-2S] binding domain THIAE_05055 PF00384 Molybdopterin oxidoreductase THIAE_05055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THIAE_05065 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THIAE_05065 PF18267 Rubredoxin NAD+ reductase C-terminal domain THIAE_05065 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_05065 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THIAE_05065 PF04324 BFD-like [2Fe-2S] binding domain THIAE_05070 PF04324 BFD-like [2Fe-2S] binding domain THIAE_05070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THIAE_05070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THIAE_05070 PF18267 Rubredoxin NAD+ reductase C-terminal domain THIAE_05070 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_05075 PF00005 ABC transporter THIAE_05080 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_05090 PF08376 Nitrate and nitrite sensing THIAE_05090 PF03861 ANTAR domain THIAE_05095 PF13476 AAA domain THIAE_05100 PF12320 Type 5 capsule protein repressor C-terminal domain THIAE_05100 PF00149 Calcineurin-like phosphoesterase THIAE_05120 PF02810 SEC-C motif THIAE_05125 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system THIAE_05150 PF01066 CDP-alcohol phosphatidyltransferase THIAE_05165 PF02151 UvrB/uvrC motif THIAE_05165 PF08459 UvrC Helix-hairpin-helix N-terminal THIAE_05165 PF12826 Helix-hairpin-helix motif THIAE_05165 PF01541 GIY-YIG catalytic domain THIAE_05170 PF01343 Peptidase family S49 THIAE_05170 PF06965 Na+/H+ antiporter 1 THIAE_05180 PF02824 TGS domain THIAE_05180 PF04607 Region found in RelA / SpoT proteins THIAE_05180 PF13291 ACT domain THIAE_05190 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase THIAE_05195 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain THIAE_05195 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain THIAE_05200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THIAE_05200 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain THIAE_05245 PF00291 Pyridoxal-phosphate dependent enzyme THIAE_05260 PF00849 RNA pseudouridylate synthase THIAE_05260 PF01479 S4 domain THIAE_05265 PF04079 Segregation and condensation complex subunit ScpB THIAE_05270 PF02616 Segregation and condensation protein ScpA THIAE_05275 PF02163 Peptidase family M50 THIAE_05280 PF01300 Telomere recombination THIAE_05285 PF02811 PHP domain THIAE_05290 PF04279 Intracellular septation protein A THIAE_05295 PF03795 YCII-related domain THIAE_05300 PF01726 LexA DNA binding domain THIAE_05300 PF00717 Peptidase S24-like THIAE_05305 PF00710 Asparaginase, N-terminal THIAE_05305 PF17763 Glutaminase/Asparaginase C-terminal domain THIAE_05320 PF04751 Protein of unknown function (DUF615) THIAE_05325 PF01653 NAD-dependent DNA ligase adenylation domain THIAE_05325 PF03120 NAD-dependent DNA ligase OB-fold domain THIAE_05325 PF03119 NAD-dependent DNA ligase C4 zinc finger domain THIAE_05325 PF12826 Helix-hairpin-helix motif THIAE_05325 PF00533 BRCA1 C Terminus (BRCT) domain THIAE_05335 PF06470 SMC proteins Flexible Hinge Domain THIAE_05335 PF02463 RecF/RecN/SMC N terminal domain THIAE_05340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain THIAE_05350 PF05698 Bacterial trigger factor protein (TF) C-terminus THIAE_05355 PF13419 Haloacid dehalogenase-like hydrolase THIAE_05360 PF01258 Prokaryotic dksA/traR C4-type zinc finger THIAE_05365 PF00749 tRNA synthetases class I (E and Q), catalytic domain THIAE_05375 PF01368 DHH family THIAE_05375 PF17768 RecJ OB domain THIAE_05375 PF02272 DHHA1 domain THIAE_05375 PF10141 Single-strand DNA-specific exonuclease, C terminal domain THIAE_05380 PF00291 Pyridoxal-phosphate dependent enzyme THIAE_05390 PF03447 Homoserine dehydrogenase, NAD binding domain THIAE_05390 PF01842 ACT domain THIAE_05390 PF00742 Homoserine dehydrogenase THIAE_05395 PF00155 Aminotransferase class I and II THIAE_05400 PF04430 Protein of unknown function (DUF498/DUF598) THIAE_05405 PF01551 Peptidase family M23 THIAE_05405 PF01476 LysM domain THIAE_05410 PF09335 SNARE associated Golgi protein THIAE_05420 PF01975 Survival protein SurE THIAE_05425 PF01713 Smr domain THIAE_05430 PF04977 Septum formation initiator THIAE_05435 PF03952 Enolase, N-terminal domain THIAE_05435 PF00113 Enolase, C-terminal TIM barrel domain THIAE_05440 PF00793 DAHP synthetase I family THIAE_05445 PF00117 Glutamine amidotransferase class-I THIAE_05445 PF06418 CTP synthase N-terminus THIAE_05450 PF01171 PP-loop family THIAE_05450 PF09179 TilS substrate binding domain THIAE_05450 PF11734 TilS substrate C-terminal domain THIAE_05455 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit THIAE_05465 PF18381 YcaO cyclodehydratase C-terminal domain THIAE_05465 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding THIAE_05475 PF03692 Putative zinc- or iron-chelating domain THIAE_05480 PF00849 RNA pseudouridylate synthase THIAE_05490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THIAE_05490 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_05495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) THIAE_05495 PF02817 e3 binding domain THIAE_05495 PF00364 Biotin-requiring enzyme THIAE_05500 PF17831 Pyruvate dehydrogenase E1 component middle domain THIAE_05500 PF00456 Transketolase, thiamine diphosphate binding domain THIAE_05505 PF00293 NUDIX domain THIAE_05515 PF00258 Flavodoxin THIAE_05525 PF01510 N-acetylmuramoyl-L-alanine amidase THIAE_05530 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THIAE_05530 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THIAE_05540 PF00849 RNA pseudouridylate synthase THIAE_05540 PF01479 S4 domain THIAE_05545 PF13525 Outer membrane lipoprotein THIAE_05555 PF00075 RNase H THIAE_05565 PF16123 Hydroxyacylglutathione hydrolase C-terminus THIAE_05565 PF00753 Metallo-beta-lactamase superfamily THIAE_05570 PF01464 Transglycosylase SLT domain THIAE_05570 PF01476 LysM domain THIAE_05575 PF01464 Transglycosylase SLT domain THIAE_05575 PF14718 Soluble lytic murein transglycosylase L domain THIAE_05580 PF09190 DALR domain THIAE_05580 PF01406 tRNA synthetases class I (C) catalytic domain THIAE_05585 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain THIAE_05585 PF00749 tRNA synthetases class I (E and Q), catalytic domain THIAE_05590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THIAE_05595 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THIAE_05600 PF00149 Calcineurin-like phosphoesterase THIAE_05605 PF00375 Sodium:dicarboxylate symporter family THIAE_05615 PF04608 Phosphatidylglycerophosphatase A THIAE_05620 PF00764 Arginosuccinate synthase THIAE_05625 PF02666 Phosphatidylserine decarboxylase THIAE_05630 PF00543 Nitrogen regulatory protein P-II THIAE_05635 PF00072 Response regulator receiver domain THIAE_05635 PF02954 Bacterial regulatory protein, Fis family THIAE_05635 PF00158 Sigma-54 interaction domain THIAE_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_05640 PF00989 PAS fold THIAE_05640 PF00512 His Kinase A (phospho-acceptor) domain THIAE_05650 PF01297 Zinc-uptake complex component A periplasmic THIAE_05655 PF00005 ABC transporter THIAE_05660 PF00950 ABC 3 transport family THIAE_05665 PF00950 ABC 3 transport family THIAE_05675 PF00330 Aconitase family (aconitate hydratase) THIAE_05675 PF06434 Aconitate hydratase 2 N-terminus THIAE_05675 PF11791 Aconitate B N-terminal domain THIAE_05680 PF00206 Lyase THIAE_05680 PF08328 Adenylosuccinate lyase C-terminal THIAE_05685 PF08007 Cupin superfamily protein THIAE_05695 PF00563 EAL domain THIAE_05695 PF03707 Bacterial signalling protein N terminal repeat THIAE_05695 PF00990 Diguanylate cyclase, GGDEF domain THIAE_05700 PF01339 CheB methylesterase THIAE_05700 PF01739 CheR methyltransferase, SAM binding domain THIAE_05700 PF08448 PAS fold THIAE_05700 PF03705 CheR methyltransferase, all-alpha domain THIAE_05725 PF00004 ATPase family associated with various cellular activities (AAA) THIAE_05725 PF02190 ATP-dependent protease La (LON) substrate-binding domain THIAE_05725 PF05362 Lon protease (S16) C-terminal proteolytic domain THIAE_05730 PF06689 ClpX C4-type zinc finger THIAE_05730 PF07724 AAA domain (Cdc48 subfamily) THIAE_05730 PF10431 C-terminal, D2-small domain, of ClpB protein THIAE_05735 PF00574 Clp protease THIAE_05740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THIAE_05740 PF05697 Bacterial trigger factor protein (TF) THIAE_05740 PF05698 Bacterial trigger factor protein (TF) C-terminus THIAE_05745 PF04241 Protein of unknown function (DUF423) THIAE_05840 PF00149 Calcineurin-like phosphoesterase THIAE_05850 PF13683 Integrase core domain THIAE_05850 PF13276 HTH-like domain THIAE_05855 PF01527 Transposase THIAE_05865 PF00271 Helicase conserved C-terminal domain THIAE_05865 PF04851 Type III restriction enzyme, res subunit THIAE_05895 PF01850 PIN domain THIAE_05900 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin THIAE_05925 PF00005 ABC transporter THIAE_05925 PF12848 ABC transporter THIAE_05935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THIAE_05945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THIAE_05945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THIAE_05945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THIAE_05945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THIAE_05950 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THIAE_05985 PF00872 Transposase, Mutator family THIAE_06005 PF01396 Topoisomerase DNA binding C4 zinc finger THIAE_06005 PF01131 DNA topoisomerase THIAE_06005 PF01751 Toprim domain THIAE_06055 PF04002 RadC-like JAB domain THIAE_06180 PF00872 Transposase, Mutator family THIAE_06200 PF02796 Helix-turn-helix domain of resolvase THIAE_06200 PF00239 Resolvase, N terminal domain THIAE_06240 PF18273 Type III R-M EcoP15I C-terminal domain THIAE_06240 PF01555 DNA methylase THIAE_06245 PF04851 Type III restriction enzyme, res subunit THIAE_06245 PF08774 VRR-NUC domain THIAE_06285 PF00589 Phage integrase family THIAE_06300 PF00361 Proton-conducting membrane transporter THIAE_06305 PF00361 Proton-conducting membrane transporter THIAE_06305 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus THIAE_06310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THIAE_06310 PF00361 Proton-conducting membrane transporter THIAE_06315 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THIAE_06320 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 THIAE_06325 PF12838 4Fe-4S dicluster domain THIAE_06330 PF00146 NADH dehydrogenase THIAE_06335 PF00384 Molybdopterin oxidoreductase THIAE_06335 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THIAE_06335 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal THIAE_06340 PF10531 SLBB domain THIAE_06340 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THIAE_06340 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THIAE_06350 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THIAE_06355 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THIAE_06360 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THIAE_06365 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 THIAE_06375 PF03840 Preprotein translocase SecG subunit THIAE_06380 PF00121 Triosephosphate isomerase THIAE_06385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THIAE_06385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THIAE_06385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THIAE_06385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THIAE_06390 PF00809 Pterin binding enzyme THIAE_06395 PF06480 FtsH Extracellular THIAE_06395 PF01434 Peptidase family M41 THIAE_06395 PF17862 AAA+ lid domain THIAE_06395 PF00004 ATPase family associated with various cellular activities (AAA) THIAE_06400 PF01728 FtsJ-like methyltransferase THIAE_06405 PF01985 CRS1 / YhbY (CRM) domain THIAE_06410 PF01053 Cys/Met metabolism PLP-dependent enzyme THIAE_06415 PF00156 Phosphoribosyl transferase domain THIAE_06425 PF02875 Mur ligase family, glutamate ligase domain THIAE_06425 PF08245 Mur ligase middle domain THIAE_06430 PF01039 Carboxyl transferase domain THIAE_06430 PF17848 Acetyl-coA carboxylase zinc finger domain THIAE_06435 PF00290 Tryptophan synthase alpha chain THIAE_06440 PF00291 Pyridoxal-phosphate dependent enzyme THIAE_06445 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase THIAE_06450 PF01416 tRNA pseudouridine synthase THIAE_06455 PF01118 Semialdehyde dehydrogenase, NAD binding domain THIAE_06455 PF02774 Semialdehyde dehydrogenase, dimerisation domain THIAE_06465 PF01551 Peptidase family M23 THIAE_06465 PF04225 Opacity-associated protein A LysM-like domain THIAE_06470 PF00180 Isocitrate/isopropylmalate dehydrogenase THIAE_06475 PF00694 Aconitase C-terminal domain THIAE_06480 PF00330 Aconitase family (aconitate hydratase) THIAE_06495 PF03989 DNA gyrase C-terminal domain, beta-propeller THIAE_06495 PF00521 DNA gyrase/topoisomerase IV, subunit A THIAE_06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_06505 PF00512 His Kinase A (phospho-acceptor) domain THIAE_06505 PF09456 RcsC Alpha-Beta-Loop (ABL) THIAE_06505 PF00072 Response regulator receiver domain THIAE_06510 PF06339 Ectoine synthase THIAE_06515 PF00202 Aminotransferase class-III THIAE_06520 PF00583 Acetyltransferase (GNAT) family THIAE_06525 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain THIAE_06525 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain THIAE_06525 PF01488 Shikimate / quinate 5-dehydrogenase THIAE_06530 PF03462 PCRF domain THIAE_06530 PF00472 RF-1 domain THIAE_06535 PF13847 Methyltransferase domain THIAE_06535 PF17827 PrmC N-terminal domain THIAE_06540 PF00899 ThiF family THIAE_06570 PF10150 Ribonuclease E/G family THIAE_06570 PF00575 S1 RNA binding domain THIAE_06575 PF02545 Maf-like protein THIAE_06580 PF04073 Aminoacyl-tRNA editing domain THIAE_06580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THIAE_06580 PF03129 Anticodon binding domain THIAE_06605 PF08534 Redoxin THIAE_06610 PF00308 Bacterial dnaA protein THIAE_06620 PF02769 AIR synthase related protein, C-terminal domain THIAE_06620 PF00586 AIR synthase related protein, N-terminal domain THIAE_06625 PF00551 Formyl transferase THIAE_06635 PF00692 dUTPase THIAE_06640 PF10609 NUBPL iron-transfer P-loop NTPase THIAE_06645 PF09334 tRNA synthetases class I (M) THIAE_06645 PF01588 Putative tRNA binding domain THIAE_06650 PF02508 Rnf-Nqr subunit, membrane protein THIAE_06655 PF04060 Putative Fe-S cluster THIAE_06660 PF10531 SLBB domain THIAE_06660 PF13375 RnfC Barrel sandwich hybrid domain THIAE_06660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THIAE_06660 PF12838 4Fe-4S dicluster domain THIAE_06665 PF03116 NQR2, RnfD, RnfE family THIAE_06670 PF04205 FMN-binding domain THIAE_06675 PF02508 Rnf-Nqr subunit, membrane protein THIAE_06680 PF00633 Helix-hairpin-helix motif THIAE_06680 PF10576 Iron-sulfur binding domain of endonuclease III THIAE_06680 PF00730 HhH-GPD superfamily base excision DNA repair protein THIAE_06695 PF00593 TonB dependent receptor THIAE_06695 PF07715 TonB-dependent Receptor Plug Domain THIAE_06720 PF02219 Methylenetetrahydrofolate reductase THIAE_06725 PF07152 YaeQ protein THIAE_06730 PF09905 DNA-binding protein VF530 THIAE_06735 PF06167 Glucose-regulated metallo-peptidase M90 THIAE_06740 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP THIAE_06740 PF12557 Cob(I)alamin adenosyltransferase N terminal THIAE_06745 PF01497 Periplasmic binding protein THIAE_06765 PF00563 EAL domain THIAE_06765 PF03707 Bacterial signalling protein N terminal repeat THIAE_06765 PF00990 Diguanylate cyclase, GGDEF domain THIAE_06775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THIAE_06775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THIAE_06775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THIAE_06775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THIAE_06785 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THIAE_06800 PF09618 CRISPR-associated protein (Cas_Csy4) THIAE_06805 PF09615 CRISPR-associated protein (Cas_Csy3) THIAE_06815 PF09611 CRISPR-associated protein (Cas_Csy1) THIAE_06820 PF18019 HD domain THIAE_06825 PF01867 CRISPR associated protein Cas1 THIAE_06840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_06840 PF00512 His Kinase A (phospho-acceptor) domain THIAE_06840 PF18719 ArlS sensor domain THIAE_06845 PF00486 Transcriptional regulatory protein, C terminal THIAE_06845 PF00072 Response regulator receiver domain THIAE_06855 PF00270 DEAD/DEAH box helicase THIAE_06855 PF00271 Helicase conserved C-terminal domain THIAE_06855 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold THIAE_06855 PF11898 Domain of unknown function (DUF3418) THIAE_06855 PF04408 Helicase associated domain (HA2) THIAE_06860 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system THIAE_06865 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THIAE_06875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THIAE_06880 PF00929 Exonuclease THIAE_06885 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain THIAE_06885 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THIAE_06905 PF00990 Diguanylate cyclase, GGDEF domain THIAE_06905 PF00072 Response regulator receiver domain THIAE_06910 PF17946 RecC C-terminal domain THIAE_06915 PF12705 PD-(D/E)XK nuclease superfamily THIAE_06915 PF00580 UvrD/REP helicase N-terminal domain THIAE_06915 PF13361 UvrD-like helicase C-terminal domain THIAE_06920 PF13538 UvrD-like helicase C-terminal domain THIAE_06925 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 THIAE_06930 PF02810 SEC-C motif THIAE_06970 PF00872 Transposase, Mutator family THIAE_06975 PF01850 PIN domain THIAE_06980 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin THIAE_06985 PF13286 Phosphohydrolase-associated domain THIAE_06985 PF01966 HD domain THIAE_06990 PF00749 tRNA synthetases class I (E and Q), catalytic domain THIAE_07000 PF00005 ABC transporter THIAE_07010 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_07015 PF00158 Sigma-54 interaction domain THIAE_07015 PF02954 Bacterial regulatory protein, Fis family THIAE_07015 PF01590 GAF domain THIAE_07020 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_07020 PF18113 Rubredoxin binding C-terminal domain THIAE_07040 PF00924 Mechanosensitive ion channel THIAE_07040 PF05552 Conserved TM helix THIAE_07055 PF00709 Adenylosuccinate synthetase THIAE_07060 PF13393 Histidyl-tRNA synthetase THIAE_07065 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) THIAE_07070 PF01145 SPFH domain / Band 7 family THIAE_07075 PF01145 SPFH domain / Band 7 family THIAE_07075 PF12221 Bacterial membrane protein N terminal THIAE_07080 PF01926 50S ribosome-binding GTPase THIAE_07080 PF16360 GTP-binding GTPase Middle Region THIAE_07080 PF13167 GTP-binding GTPase N-terminal THIAE_07085 PF17209 Hfq protein THIAE_07095 PF01119 DNA mismatch repair protein, C-terminal domain THIAE_07095 PF08676 MutL C terminal dimerisation domain THIAE_07100 PF11741 AMIN domain THIAE_07100 PF01520 N-acetylmuramoyl-L-alanine amidase THIAE_07105 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE THIAE_07110 PF08331 Domain of unknown function (DUF1730) THIAE_07120 PF07194 P2 response regulator binding domain THIAE_07120 PF01627 Hpt domain THIAE_07120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_07120 PF02895 Signal transducing histidine kinase, homodimeric domain THIAE_07120 PF01584 CheW-like domain THIAE_07130 PF00072 Response regulator receiver domain THIAE_07135 PF04542 Sigma-70 region 2 THIAE_07135 PF04539 Sigma-70 region 3 THIAE_07135 PF04545 Sigma-70, region 4 THIAE_07140 PF10609 NUBPL iron-transfer P-loop NTPase THIAE_07145 PF00448 SRP54-type protein, GTPase domain THIAE_07150 PF00771 FHIPEP family THIAE_07155 PF00872 Transposase, Mutator family THIAE_07160 PF01312 FlhB HrpN YscU SpaS Family THIAE_07165 PF01311 Bacterial export proteins, family 1 THIAE_07170 PF01313 Bacterial export proteins, family 3 THIAE_07175 PF00813 FliP family THIAE_07180 PF04347 Flagellar biosynthesis protein, FliO THIAE_07185 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THIAE_07190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term THIAE_07190 PF02154 Flagellar motor switch protein FliM THIAE_07200 PF00691 OmpA family THIAE_07200 PF13677 Membrane MotB of proton-channel complex MotA/MotB THIAE_07205 PF01618 MotA/TolQ/ExbB proton channel family THIAE_07210 PF00672 HAMP domain THIAE_07210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_07225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIAE_07225 PF18269 T3SS EscN ATPase C-terminal domain THIAE_07235 PF01706 FliG C-terminal domain THIAE_07235 PF14841 FliG middle domain THIAE_07235 PF14842 FliG N-terminal domain THIAE_07240 PF08345 Flagellar M-ring protein C-terminal THIAE_07240 PF01514 Secretory protein of YscJ/FliF family THIAE_07245 PF02049 Flagellar hook-basal body complex protein FliE THIAE_07250 PF00072 Response regulator receiver domain THIAE_07250 PF00158 Sigma-54 interaction domain THIAE_07250 PF02954 Bacterial regulatory protein, Fis family THIAE_07255 PF00989 PAS fold THIAE_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_07255 PF00512 His Kinase A (phospho-acceptor) domain THIAE_07265 PF02561 Flagellar protein FliS THIAE_07270 PF02465 Flagellar hook-associated protein 2 N-terminus THIAE_07270 PF07195 Flagellar hook-associated protein 2 C-terminus THIAE_07270 PF07196 Flagellin hook IN motif THIAE_07275 PF03646 FlaG protein THIAE_07285 PF00700 Bacterial flagellin C-terminal helical region THIAE_07285 PF00669 Bacterial flagellin N-terminal helical region THIAE_07300 PF02348 Cytidylyltransferase THIAE_07310 PF00483 Nucleotidyl transferase THIAE_07325 PF13419 Haloacid dehalogenase-like hydrolase THIAE_07345 PF06250 YhcG PDDEXK nuclease domain THIAE_07345 PF17761 DUF1016 N-terminal domain THIAE_07350 PF08666 SAF domain THIAE_07350 PF03102 NeuB family THIAE_07360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THIAE_07365 PF16363 GDP-mannose 4,6 dehydratase THIAE_07370 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain THIAE_07370 PF01464 Transglycosylase SLT domain THIAE_07375 PF00669 Bacterial flagellin N-terminal helical region THIAE_07375 PF00700 Bacterial flagellin C-terminal helical region THIAE_07380 PF07196 Flagellin hook IN motif THIAE_07380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIAE_07385 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase THIAE_07385 PF10135 Rod binding protein THIAE_07390 PF02119 Flagellar P-ring protein THIAE_07395 PF02107 Flagellar L-ring protein THIAE_07400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal THIAE_07400 PF00460 Flagella basal body rod protein THIAE_07420 PF13840 ACT domain THIAE_07420 PF01842 ACT domain THIAE_07420 PF00696 Amino acid kinase family THIAE_07425 PF02272 DHHA1 domain THIAE_07425 PF01411 tRNA synthetases class II (A) THIAE_07425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THIAE_07430 PF02631 RecX family THIAE_07435 PF00154 recA bacterial DNA recombination protein THIAE_07440 PF02464 Competence-damaged protein THIAE_07445 PF01739 CheR methyltransferase, SAM binding domain THIAE_07445 PF08448 PAS fold THIAE_07445 PF01339 CheB methylesterase THIAE_07445 PF03705 CheR methyltransferase, all-alpha domain THIAE_07455 PF00072 Response regulator receiver domain THIAE_07455 PF00512 His Kinase A (phospho-acceptor) domain THIAE_07455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_07455 PF09308 LuxQ, periplasmic THIAE_07465 PF00488 MutS domain V THIAE_07465 PF05190 MutS family domain IV THIAE_07465 PF05188 MutS domain II THIAE_07465 PF01624 MutS domain I THIAE_07465 PF05192 MutS domain III THIAE_07470 PF00085 Thioredoxin THIAE_07485 PF18030 RimK PreATP-grasp domain THIAE_07485 PF08443 RimK-like ATP-grasp domain THIAE_07500 PF01245 Ribosomal protein L19 THIAE_07505 PF01746 tRNA (Guanine-1)-methyltransferase THIAE_07510 PF01782 RimM N-terminal domain THIAE_07510 PF05239 PRC-barrel domain THIAE_07515 PF00886 Ribosomal protein S16 THIAE_07520 PF02881 SRP54-type protein, helical bundle domain THIAE_07520 PF00448 SRP54-type protein, GTPase domain THIAE_07520 PF02978 Signal peptide binding domain THIAE_07530 PF01595 Cyclin M transmembrane N-terminal domain THIAE_07530 PF00571 CBS domain THIAE_07530 PF03471 Transporter associated domain THIAE_07535 PF00459 Inositol monophosphatase family THIAE_07540 PF18073 Rubredoxin metal binding domain THIAE_07545 PF02167 Cytochrome C1 family THIAE_07550 PF00033 Cytochrome b/b6/petB THIAE_07550 PF00032 Cytochrome b(C-terminal)/b6/petD THIAE_07555 PF00355 Rieske [2Fe-2S] domain THIAE_07555 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal THIAE_07560 PF01784 NIF3 (NGG1p interacting factor 3) THIAE_07565 PF00155 Aminotransferase class I and II THIAE_07570 PF00815 Histidinol dehydrogenase THIAE_07575 PF01634 ATP phosphoribosyltransferase THIAE_07580 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THIAE_07590 PF01061 ABC-2 type transporter THIAE_07595 PF00005 ABC transporter THIAE_07610 PF02470 MlaD protein THIAE_07615 PF02405 Permease MlaE THIAE_07620 PF00005 ABC transporter THIAE_07630 PF01699 Sodium/calcium exchanger protein THIAE_07650 PF12399 Branched-chain amino acid ATP-binding cassette transporter THIAE_07650 PF00005 ABC transporter THIAE_07655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein THIAE_07660 PF01451 Low molecular weight phosphotyrosine protein phosphatase THIAE_07665 PF00849 RNA pseudouridylate synthase THIAE_07680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase THIAE_07680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THIAE_07685 PF00183 Hsp90 protein THIAE_07695 PF02895 Signal transducing histidine kinase, homodimeric domain THIAE_07695 PF01584 CheW-like domain THIAE_07695 PF01627 Hpt domain THIAE_07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_07700 PF03975 CheD chemotactic sensory transduction THIAE_07705 PF14437 MafB19-like deaminase THIAE_07710 PF00117 Glutamine amidotransferase class-I THIAE_07710 PF00958 GMP synthase C terminal domain THIAE_07710 PF02540 NAD synthase THIAE_07715 PF00478 IMP dehydrogenase / GMP reductase domain THIAE_07715 PF00571 CBS domain THIAE_07745 PF01618 MotA/TolQ/ExbB proton channel family THIAE_07750 PF02472 Biopolymer transport protein ExbD/TolR THIAE_07755 PF03544 Gram-negative bacterial TonB protein C-terminal THIAE_07760 PF00579 tRNA synthetases class I (W and Y) THIAE_07770 PF06865 Pyrimidine/purine nucleoside phosphorylase THIAE_07775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily THIAE_07780 PF12832 MFS_1 like family THIAE_07785 PF01264 Chorismate synthase THIAE_07795 PF05175 Methyltransferase small domain THIAE_07800 PF00994 Probable molybdopterin binding domain THIAE_07805 PF00004 ATPase family associated with various cellular activities (AAA) THIAE_07805 PF05362 Lon protease (S16) C-terminal proteolytic domain THIAE_07805 PF02190 ATP-dependent protease La (LON) substrate-binding domain THIAE_07815 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) THIAE_07820 PF08534 Redoxin THIAE_07825 PF00581 Rhodanese-like domain THIAE_07830 PF00202 Aminotransferase class-III THIAE_07840 PF01584 CheW-like domain THIAE_07840 PF00072 Response regulator receiver domain THIAE_07865 PF00459 Inositol monophosphatase family THIAE_07870 PF00293 NUDIX domain THIAE_07875 PF13419 Haloacid dehalogenase-like hydrolase THIAE_07880 PF00578 AhpC/TSA family THIAE_07905 PF13609 Gram-negative porin THIAE_07910 PF00753 Metallo-beta-lactamase superfamily THIAE_07915 PF00512 His Kinase A (phospho-acceptor) domain THIAE_07915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_07915 PF00989 PAS fold THIAE_07920 PF02954 Bacterial regulatory protein, Fis family THIAE_07920 PF00072 Response regulator receiver domain THIAE_07920 PF00158 Sigma-54 interaction domain THIAE_07925 PF01758 Sodium Bile acid symporter family THIAE_07930 PF13657 HipA N-terminal domain THIAE_07930 PF07804 HipA-like C-terminal domain THIAE_07935 PF01381 Helix-turn-helix THIAE_07940 PF03459 TOBE domain THIAE_07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIAE_07950 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_07955 PF03459 TOBE domain THIAE_07955 PF00005 ABC transporter THIAE_07970 PF05973 Phage derived protein Gp49-like (DUF891) THIAE_07985 PF03707 Bacterial signalling protein N terminal repeat THIAE_07985 PF00990 Diguanylate cyclase, GGDEF domain THIAE_07985 PF00563 EAL domain THIAE_07995 PF00881 Nitroreductase family THIAE_08000 PF00512 His Kinase A (phospho-acceptor) domain THIAE_08000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_08000 PF00672 HAMP domain THIAE_08015 PF00486 Transcriptional regulatory protein, C terminal THIAE_08015 PF00072 Response regulator receiver domain THIAE_08020 PF07731 Multicopper oxidase THIAE_08020 PF07732 Multicopper oxidase THIAE_08020 PF00394 Multicopper oxidase THIAE_08025 PF05275 Copper resistance protein B precursor (CopB) THIAE_08040 PF00360 Phytochrome region THIAE_08040 PF00563 EAL domain THIAE_08040 PF01590 GAF domain THIAE_08040 PF00990 Diguanylate cyclase, GGDEF domain THIAE_08045 PF00512 His Kinase A (phospho-acceptor) domain THIAE_08045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_08045 PF00072 Response regulator receiver domain THIAE_08045 PF09308 LuxQ, periplasmic THIAE_08050 PF08448 PAS fold THIAE_08050 PF08447 PAS fold THIAE_08050 PF00990 Diguanylate cyclase, GGDEF domain THIAE_08050 PF00563 EAL domain THIAE_08060 PF10119 Predicted methyltransferase regulatory domain THIAE_08060 PF13847 Methyltransferase domain THIAE_08070 PF04186 FxsA cytoplasmic membrane protein THIAE_08075 PF02683 Cytochrome C biogenesis protein transmembrane region THIAE_08075 PF11412 Disulphide bond corrector protein DsbC THIAE_08085 PF01220 Dehydroquinase class II THIAE_08090 PF00364 Biotin-requiring enzyme THIAE_08095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THIAE_08095 PF00289 Biotin carboxylase, N-terminal domain THIAE_08095 PF02785 Biotin carboxylase C-terminal domain THIAE_08105 PF01207 Dihydrouridine synthase (Dus) THIAE_08110 PF02954 Bacterial regulatory protein, Fis family THIAE_08115 PF01808 AICARFT/IMPCHase bienzyme THIAE_08115 PF02142 MGS-like domain THIAE_08120 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain THIAE_08120 PF02843 Phosphoribosylglycinamide synthetase, C domain THIAE_08120 PF02844 Phosphoribosylglycinamide synthetase, N domain THIAE_08125 PF00005 ABC transporter THIAE_08130 PF01032 FecCD transport family THIAE_08135 PF01497 Periplasmic binding protein THIAE_08140 PF05171 Haemin-degrading HemS.ChuX domain THIAE_08155 PF00593 TonB dependent receptor THIAE_08155 PF07715 TonB-dependent Receptor Plug Domain THIAE_08165 PF00563 EAL domain THIAE_08165 PF00990 Diguanylate cyclase, GGDEF domain THIAE_08165 PF03707 Bacterial signalling protein N terminal repeat THIAE_08175 PF01717 Cobalamin-independent synthase, Catalytic domain THIAE_08175 PF08267 Cobalamin-independent synthase, N-terminal domain THIAE_08205 PF06616 BsuBI/PstI restriction endonuclease domain THIAE_08205 PF17728 BsuBI/PstI restriction endonuclease HTH domain THIAE_08210 PF07669 Eco57I restriction-modification methylase THIAE_08245 PF03466 LysR substrate binding domain THIAE_08245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIAE_08275 PF07715 TonB-dependent Receptor Plug Domain THIAE_08300 PF01063 Amino-transferase class IV THIAE_08305 PF00202 Aminotransferase class-III THIAE_08310 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THIAE_08310 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THIAE_08315 PF02132 RecR protein THIAE_08315 PF13662 Toprim domain THIAE_08320 PF02575 YbaB/EbfC DNA-binding family THIAE_08325 PF12169 DNA polymerase III subunits gamma and tau domain III THIAE_08325 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding THIAE_08325 PF12170 DNA polymerase III tau subunit V interacting with alpha THIAE_08330 PF00343 Carbohydrate phosphorylase THIAE_08335 PF00534 Glycosyl transferases group 1 THIAE_08335 PF08323 Starch synthase catalytic domain THIAE_08340 PF02806 Alpha amylase, C-terminal all-beta domain THIAE_08340 PF00128 Alpha amylase, catalytic domain THIAE_08340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THIAE_08345 PF02446 4-alpha-glucanotransferase THIAE_08355 PF00483 Nucleotidyl transferase THIAE_08360 PF02685 Glucokinase THIAE_08365 PF13580 SIS domain THIAE_08370 PF00294 pfkB family carbohydrate kinase THIAE_08370 PF01467 Cytidylyltransferase-like THIAE_08380 PF00571 CBS domain THIAE_08380 PF01380 SIS domain THIAE_08385 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) THIAE_08405 PF02652 L-lactate permease THIAE_08410 PF00731 AIR carboxylase THIAE_08415 PF02222 ATP-grasp domain THIAE_08415 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain THIAE_08430 PF00438 S-adenosylmethionine synthetase, N-terminal domain THIAE_08430 PF02772 S-adenosylmethionine synthetase, central domain THIAE_08430 PF02773 S-adenosylmethionine synthetase, C-terminal domain THIAE_08435 PF02219 Methylenetetrahydrofolate reductase THIAE_08440 PF04452 RNA methyltransferase THIAE_08445 PF09820 Predicted AAA-ATPase THIAE_08445 PF08011 PD-(D/E)XK nuclease superfamily THIAE_08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_08480 PF00512 His Kinase A (phospho-acceptor) domain THIAE_08480 PF00989 PAS fold THIAE_08490 PF03631 Virulence factor BrkB THIAE_08495 PF03572 Peptidase family S41 THIAE_08495 PF13180 PDZ domain THIAE_08510 PF04101 Glycosyltransferase family 28 C-terminal domain THIAE_08510 PF03033 Glycosyltransferase family 28 N-terminal domain THIAE_08515 PF01098 Cell cycle protein THIAE_08520 PF02875 Mur ligase family, glutamate ligase domain THIAE_08520 PF08245 Mur ligase middle domain THIAE_08525 PF00953 Glycosyl transferase family 4 THIAE_08530 PF01225 Mur ligase family, catalytic domain THIAE_08530 PF02875 Mur ligase family, glutamate ligase domain THIAE_08530 PF08245 Mur ligase middle domain THIAE_08535 PF02875 Mur ligase family, glutamate ligase domain THIAE_08535 PF01225 Mur ligase family, catalytic domain THIAE_08535 PF08245 Mur ligase middle domain THIAE_08540 PF03717 Penicillin-binding Protein dimerisation domain THIAE_08540 PF00905 Penicillin binding protein transpeptidase domain THIAE_08550 PF12327 FtsZ family, C-terminal domain THIAE_08550 PF00091 Tubulin/FtsZ family, GTPase domain THIAE_08555 PF01795 MraW methylase family THIAE_08560 PF02381 MraZ protein, putative antitoxin-like THIAE_08570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THIAE_08580 PF02021 Uncharacterised protein family UPF0102 THIAE_08585 PF00210 Ferritin-like domain THIAE_08590 PF04172 LrgB-like family THIAE_08595 PF03788 LrgA family THIAE_08600 PF16916 Dimerisation domain of Zinc Transporter THIAE_08600 PF01545 Cation efflux family THIAE_08610 PF04539 Sigma-70 region 3 THIAE_08610 PF04545 Sigma-70, region 4 THIAE_08610 PF00140 Sigma-70 factor, region 1.2 THIAE_08610 PF03979 Sigma-70 factor, region 1.1 THIAE_08610 PF04546 Sigma-70, non-essential region THIAE_08610 PF04542 Sigma-70 region 2 THIAE_08615 PF10410 DnaB-helicase binding domain of primase THIAE_08615 PF08278 DNA primase DnaG DnaB-binding THIAE_08615 PF13662 Toprim domain THIAE_08615 PF08275 DNA primase catalytic core, N-terminal domain THIAE_08615 PF01807 CHC2 zinc finger THIAE_08625 PF01165 Ribosomal protein S21 THIAE_08630 PF00814 Glycoprotease family THIAE_08635 PF02660 Glycerol-3-phosphate acyltransferase THIAE_08650 PF02673 Bacitracin resistance protein BacA THIAE_08660 PF03448 MgtE intracellular N domain THIAE_08660 PF01769 Divalent cation transporter THIAE_08660 PF00571 CBS domain THIAE_08670 PF00571 CBS domain THIAE_08670 PF03448 MgtE intracellular N domain THIAE_08670 PF01769 Divalent cation transporter THIAE_08675 PF00816 H-NS histone family THIAE_08680 PF00186 Dihydrofolate reductase THIAE_08685 PF00303 Thymidylate synthase THIAE_08690 PF17191 RecG wedge domain THIAE_08690 PF13749 Putative ATP-dependent DNA helicase recG C-terminal THIAE_08690 PF00270 DEAD/DEAH box helicase THIAE_08695 PF01790 Prolipoprotein diacylglyceryl transferase THIAE_08725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THIAE_08725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THIAE_08740 PF13686 DsrE/DsrF/DrsH-like family THIAE_08785 PF01926 50S ribosome-binding GTPase THIAE_08785 PF06071 Protein of unknown function (DUF933) THIAE_08790 PF01195 Peptidyl-tRNA hydrolase THIAE_08795 PF01386 Ribosomal L25p family THIAE_08795 PF14693 Ribosomal protein TL5, C-terminal domain THIAE_08800 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THIAE_08800 PF14572 Phosphoribosyl synthetase-associated domain THIAE_08810 PF01649 Ribosomal protein S20 THIAE_08815 PF02590 Predicted SPOUT methyltransferase THIAE_08825 PF01467 Cytidylyltransferase-like THIAE_08830 PF02805 Metal binding domain of Ada THIAE_08830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain THIAE_08830 PF12833 Helix-turn-helix domain THIAE_08830 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain THIAE_08840 PF00171 Aldehyde dehydrogenase family THIAE_08845 PF09820 Predicted AAA-ATPase THIAE_08845 PF08011 PD-(D/E)XK nuclease superfamily THIAE_08865 PF13603 Leucyl-tRNA synthetase, Domain 2 THIAE_08865 PF00133 tRNA synthetases class I (I, L, M and V) THIAE_08865 PF08264 Anticodon-binding domain of tRNA THIAE_08900 PF01757 Acyltransferase family THIAE_08925 PF08335 GlnD PII-uridylyltransferase THIAE_08925 PF03710 Glutamate-ammonia ligase adenylyltransferase THIAE_08940 PF00543 Nitrogen regulatory protein P-II THIAE_08945 PF00909 Ammonium Transporter Family THIAE_08955 PF00700 Bacterial flagellin C-terminal helical region THIAE_08955 PF00669 Bacterial flagellin N-terminal helical region THIAE_08965 PF10458 Valyl tRNA synthetase tRNA binding arm THIAE_08965 PF08264 Anticodon-binding domain of tRNA THIAE_08965 PF00133 tRNA synthetases class I (I, L, M and V) THIAE_08980 PF02899 Phage integrase, N-terminal SAM-like domain THIAE_08980 PF00589 Phage integrase family THIAE_08985 PF00873 AcrB/AcrD/AcrF family THIAE_08990 PF00529 HlyD membrane-fusion protein of T1SS THIAE_08990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIAE_09000 PF02129 X-Pro dipeptidyl-peptidase (S15 family) THIAE_09005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THIAE_09005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THIAE_09005 PF11890 Domain of unknown function (DUF3410) THIAE_09035 PF01070 FMN-dependent dehydrogenase THIAE_09040 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal THIAE_09040 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal THIAE_09060 PF04386 Stringent starvation protein B THIAE_09065 PF02798 Glutathione S-transferase, N-terminal domain THIAE_09065 PF00043 Glutathione S-transferase, C-terminal domain THIAE_09085 PF13411 MerR HTH family regulatory protein THIAE_09090 PF00216 Bacterial DNA-binding protein THIAE_09095 PF03147 Ferredoxin-fold anticodon binding domain THIAE_09095 PF01588 Putative tRNA binding domain THIAE_09095 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain THIAE_09095 PF03483 B3/4 domain THIAE_09095 PF03484 tRNA synthetase B5 domain THIAE_09100 PF01409 tRNA synthetases class II core domain (F) THIAE_09100 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain THIAE_09105 PF00453 Ribosomal protein L20 THIAE_09110 PF01632 Ribosomal protein L35 THIAE_09115 PF00707 Translation initiation factor IF-3, C-terminal domain THIAE_09115 PF05198 Translation initiation factor IF-3, N-terminal domain THIAE_09120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THIAE_09120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THIAE_09120 PF02824 TGS domain THIAE_09120 PF03129 Anticodon binding domain THIAE_09135 PF10518 TAT (twin-arginine translocation) pathway signal sequence THIAE_09135 PF07992 Pyridine nucleotide-disulphide oxidoreductase THIAE_09135 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THIAE_09145 PF03739 Lipopolysaccharide export system permease LptF/LptG THIAE_09155 PF00883 Cytosol aminopeptidase family, catalytic domain THIAE_09155 PF02789 Cytosol aminopeptidase family, N-terminal domain THIAE_09165 PF00072 Response regulator receiver domain THIAE_09165 PF00486 Transcriptional regulatory protein, C terminal THIAE_09170 PF00246 Zinc carboxypeptidase THIAE_09185 PF02151 UvrB/uvrC motif THIAE_09185 PF04851 Type III restriction enzyme, res subunit THIAE_09185 PF00271 Helicase conserved C-terminal domain THIAE_09185 PF12344 Ultra-violet resistance protein B THIAE_09185 PF17757 UvrB interaction domain THIAE_09215 PF05958 tRNA (Uracil-5-)-methyltransferase THIAE_09215 PF01938 TRAM domain THIAE_09220 PF00672 HAMP domain THIAE_09220 PF02203 Tar ligand binding domain homologue THIAE_09220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_09225 PF00873 AcrB/AcrD/AcrF family THIAE_09230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIAE_09235 PF00762 Ferrochelatase THIAE_09250 PF17764 3′ DNA-binding domain (3′BD) THIAE_09250 PF18319 PriA DNA helicase Cys-rich region (CRR) domain THIAE_09250 PF18074 Primosomal protein N C-terminal domain THIAE_09250 PF00271 Helicase conserved C-terminal domain THIAE_09250 PF00270 DEAD/DEAH box helicase THIAE_09260 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component THIAE_09275 PF01276 Orn/Lys/Arg decarboxylase, major domain THIAE_09275 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain THIAE_09275 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain THIAE_09280 PF00672 HAMP domain THIAE_09280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_09280 PF00512 His Kinase A (phospho-acceptor) domain THIAE_09285 PF00486 Transcriptional regulatory protein, C terminal THIAE_09285 PF00072 Response regulator receiver domain THIAE_09300 PF00440 Bacterial regulatory proteins, tetR family THIAE_09315 PF00872 Transposase, Mutator family THIAE_09320 PF00270 DEAD/DEAH box helicase THIAE_09320 PF00271 Helicase conserved C-terminal domain THIAE_09320 PF03880 DbpA RNA binding domain THIAE_09325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THIAE_09325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THIAE_09330 PF03480 Bacterial extracellular solute-binding protein, family 7 THIAE_09345 PF00873 AcrB/AcrD/AcrF family THIAE_09350 PF00593 TonB dependent receptor THIAE_09350 PF07715 TonB-dependent Receptor Plug Domain THIAE_09355 PF00361 Proton-conducting membrane transporter THIAE_09355 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter THIAE_09355 PF13244 Domain of unknown function (DUF4040) THIAE_09355 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THIAE_09360 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THIAE_09365 PF00361 Proton-conducting membrane transporter THIAE_09375 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) THIAE_09380 PF03334 Na+/H+ antiporter subunit THIAE_09390 PF13439 Glycosyltransferase Family 4 THIAE_09390 PF00534 Glycosyl transferases group 1 THIAE_09400 PF01502 Phosphoribosyl-AMP cyclohydrolase THIAE_09410 PF00226 DnaJ domain THIAE_09410 PF01556 DnaJ C terminal domain THIAE_09415 PF03641 Possible lysine decarboxylase THIAE_09415 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases THIAE_09415 PF11892 Domain of unknown function (DUF3412) THIAE_09420 PF00270 DEAD/DEAH box helicase THIAE_09420 PF00271 Helicase conserved C-terminal domain THIAE_09425 PF00672 HAMP domain THIAE_09425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_09425 PF02203 Tar ligand binding domain homologue THIAE_09430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THIAE_09430 PF00672 HAMP domain THIAE_09435 PF01584 CheW-like domain THIAE_09440 PF01142 tRNA pseudouridine synthase D (TruD) THIAE_09455 PF00465 Iron-containing alcohol dehydrogenase THIAE_09460 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system THIAE_09470 PF13361 UvrD-like helicase C-terminal domain THIAE_09470 PF00580 UvrD/REP helicase N-terminal domain THIAE_09490 PF05175 Methyltransferase small domain THIAE_09530 PF00267 Gram-negative porin THIAE_09540 PF00440 Bacterial regulatory proteins, tetR family THIAE_09545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THIAE_09550 PF00873 AcrB/AcrD/AcrF family THIAE_09555 PF02321 Outer membrane efflux protein THIAE_09565 PF03692 Putative zinc- or iron-chelating domain THIAE_09595 PF13335 Magnesium chelatase, subunit ChlI C-terminal THIAE_09595 PF01078 Magnesium chelatase, subunit ChlI THIAE_09625 PF05598 Transposase domain (DUF772) THIAE_09660 PF01555 DNA methylase THIAE_09670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIAE_09670 PF00306 ATP synthase alpha/beta chain, C terminal domain THIAE_09670 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIAE_09695 PF01078 Magnesium chelatase, subunit ChlI THIAE_09695 PF13335 Magnesium chelatase, subunit ChlI C-terminal THIAE_09700 PF04380 Membrane fusogenic activity THIAE_09710 PF00750 tRNA synthetases class I (R) THIAE_09710 PF05746 DALR anticodon binding domain THIAE_09710 PF03485 Arginyl tRNA synthetase N terminal domain THIAE_09715 PF01751 Toprim domain THIAE_09715 PF01131 DNA topoisomerase THIAE_09715 PF13368 Topoisomerase C-terminal repeat THIAE_09730 PF02481 DNA recombination-mediator protein A THIAE_09730 PF17782 DprA winged helix domain THIAE_09735 PF01327 Polypeptide deformylase THIAE_09740 PF02911 Formyl transferase, C-terminal domain THIAE_09740 PF00551 Formyl transferase THIAE_09745 PF01189 16S rRNA methyltransferase RsmB/F THIAE_09745 PF01029 NusB family THIAE_09755 PF00512 His Kinase A (phospho-acceptor) domain THIAE_09755 PF00989 PAS fold THIAE_09755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_09755 PF00672 HAMP domain THIAE_09760 PF02954 Bacterial regulatory protein, Fis family THIAE_09760 PF00072 Response regulator receiver domain THIAE_09760 PF00158 Sigma-54 interaction domain THIAE_09765 PF02080 TrkA-C domain THIAE_09765 PF02254 TrkA-N domain THIAE_09770 PF02386 Cation transport protein THIAE_09790 PF13746 4Fe-4S dicluster domain THIAE_09790 PF12801 4Fe-4S binding domain THIAE_09790 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase THIAE_09800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THIAE_09800 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP THIAE_09815 PF00115 Cytochrome C and Quinol oxidase polypeptide I THIAE_09820 PF00475 Imidazoleglycerol-phosphate dehydratase THIAE_09825 PF00117 Glutamine amidotransferase class-I THIAE_09830 PF00977 Histidine biosynthesis protein THIAE_09835 PF00977 Histidine biosynthesis protein THIAE_09840 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase THIAE_09845 PF01230 HIT domain THIAE_09850 PF02416 mttA/Hcf106 family THIAE_09855 PF02416 mttA/Hcf106 family THIAE_09860 PF00902 Sec-independent protein translocase protein (TatC) THIAE_09875 PF04542 Sigma-70 region 2 THIAE_09875 PF04545 Sigma-70, region 4 THIAE_09875 PF00140 Sigma-70 factor, region 1.2 THIAE_09890 PF01725 Ham1 family THIAE_09900 PF03466 LysR substrate binding domain THIAE_09900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIAE_09960 PF00101 Ribulose bisphosphate carboxylase, small chain THIAE_09965 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THIAE_09965 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THIAE_09970 PF04247 Invasion gene expression up-regulator, SirB THIAE_09975 PF08241 Methyltransferase domain THIAE_09980 PF00561 alpha/beta hydrolase fold THIAE_09985 PF00313 'Cold-shock' DNA-binding domain THIAE_09995 PF00155 Aminotransferase class I and II THIAE_10000 PF04055 Radical SAM superfamily THIAE_10000 PF06968 Biotin and Thiamin Synthesis associated domain THIAE_10005 PF00156 Phosphoribosyl transferase domain THIAE_10010 PF02595 Glycerate kinase family THIAE_10015 PF00128 Alpha amylase, catalytic domain THIAE_10030 PF00580 UvrD/REP helicase N-terminal domain THIAE_10030 PF13361 UvrD-like helicase C-terminal domain THIAE_10035 PF00085 Thioredoxin THIAE_10040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIAE_10040 PF07497 Rho termination factor, RNA-binding domain THIAE_10040 PF07498 Rho termination factor, N-terminal domain THIAE_10045 PF01197 Ribosomal protein L31 THIAE_10055 PF01208 Uroporphyrinogen decarboxylase (URO-D) THIAE_10060 PF04362 Bacterial Fe(2+) trafficking THIAE_10065 PF00730 HhH-GPD superfamily base excision DNA repair protein THIAE_10065 PF14815 NUDIX domain THIAE_10070 PF02390 Putative methyltransferase THIAE_10080 PF00672 HAMP domain THIAE_10080 PF00072 Response regulator receiver domain THIAE_10080 PF01627 Hpt domain THIAE_10080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_10080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_10080 PF00512 His Kinase A (phospho-acceptor) domain THIAE_10085 PF01612 3'-5' exonuclease THIAE_10085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THIAE_10085 PF01367 5'-3' exonuclease, C-terminal SAM fold THIAE_10085 PF00476 DNA polymerase family A THIAE_10090 PF00990 Diguanylate cyclase, GGDEF domain THIAE_10105 PF01171 PP-loop family THIAE_10110 PF05958 tRNA (Uracil-5-)-methyltransferase THIAE_10115 PF00672 HAMP domain THIAE_10115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_10115 PF00512 His Kinase A (phospho-acceptor) domain THIAE_10115 PF01627 Hpt domain THIAE_10115 PF00072 Response regulator receiver domain THIAE_10115 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_10125 PF00072 Response regulator receiver domain THIAE_10130 PF00672 HAMP domain THIAE_10130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_10130 PF01627 Hpt domain THIAE_10130 PF00072 Response regulator receiver domain THIAE_10130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_10130 PF00512 His Kinase A (phospho-acceptor) domain THIAE_10140 PF00072 Response regulator receiver domain THIAE_10140 PF00512 His Kinase A (phospho-acceptor) domain THIAE_10140 PF00672 HAMP domain THIAE_10140 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_10140 PF01627 Hpt domain THIAE_10140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_10145 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_10145 PF00072 Response regulator receiver domain THIAE_10145 PF01627 Hpt domain THIAE_10145 PF00512 His Kinase A (phospho-acceptor) domain THIAE_10145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_10145 PF00672 HAMP domain THIAE_10150 PF13667 ThiC-associated domain THIAE_10150 PF01964 Radical SAM ThiC family THIAE_10155 PF01266 FAD dependent oxidoreductase THIAE_10160 PF02597 ThiS family THIAE_10165 PF05690 Thiazole biosynthesis protein ThiG THIAE_10170 PF13614 AAA domain THIAE_10180 PF08534 Redoxin THIAE_10185 PF04264 YceI-like domain THIAE_10190 PF01040 UbiA prenyltransferase family THIAE_10200 PF12804 MobA-like NTP transferase domain THIAE_10200 PF00132 Bacterial transferase hexapeptide (six repeats) THIAE_10205 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain THIAE_10205 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain THIAE_10210 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIAE_10210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIAE_10215 PF00231 ATP synthase THIAE_10220 PF02874 ATP synthase alpha/beta family, beta-barrel domain THIAE_10220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THIAE_10220 PF00306 ATP synthase alpha/beta chain, C terminal domain THIAE_10225 PF00213 ATP synthase delta (OSCP) subunit THIAE_10230 PF00430 ATP synthase B/B' CF(0) THIAE_10235 PF00137 ATP synthase subunit C THIAE_10240 PF00119 ATP synthase A chain THIAE_10255 PF02195 ParB-like nuclease domain THIAE_10255 PF17762 HTH domain found in ParB protein THIAE_10260 PF13614 AAA domain THIAE_10265 PF02527 rRNA small subunit methyltransferase G THIAE_10270 PF01134 Glucose inhibited division protein A THIAE_10270 PF13932 GidA associated domain THIAE_10290 PF01613 Flavin reductase like domain THIAE_10295 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term THIAE_10295 PF14489 QueF-like protein THIAE_10305 PF00210 Ferritin-like domain THIAE_10310 PF00593 TonB dependent receptor THIAE_10310 PF07660 Secretin and TonB N terminus short domain THIAE_10310 PF07715 TonB-dependent Receptor Plug Domain THIAE_10335 PF02602 Uroporphyrinogen-III synthase HemD THIAE_10340 PF03900 Porphobilinogen deaminase, C-terminal domain THIAE_10340 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain THIAE_10350 PF00206 Lyase THIAE_10350 PF14698 Argininosuccinate lyase C-terminal THIAE_10365 PF00501 AMP-binding enzyme THIAE_10365 PF01553 Acyltransferase THIAE_10370 PF05977 Transmembrane secretion effector THIAE_10375 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THIAE_10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_10375 PF00672 HAMP domain THIAE_10375 PF00512 His Kinase A (phospho-acceptor) domain THIAE_10375 PF00072 Response regulator receiver domain THIAE_10375 PF01627 Hpt domain THIAE_10380 PF03449 Transcription elongation factor, N-terminal THIAE_10380 PF01272 Transcription elongation factor, GreA/GreB, C-term THIAE_10395 PF00691 OmpA family THIAE_10395 PF13677 Membrane MotB of proton-channel complex MotA/MotB THIAE_10400 PF01618 MotA/TolQ/ExbB proton channel family THIAE_10405 PF01432 Peptidase family M3 THIAE_10415 PF00563 EAL domain THIAE_10415 PF03707 Bacterial signalling protein N terminal repeat THIAE_10415 PF00990 Diguanylate cyclase, GGDEF domain THIAE_10420 PF00990 Diguanylate cyclase, GGDEF domain THIAE_10420 PF03707 Bacterial signalling protein N terminal repeat THIAE_10420 PF00563 EAL domain THIAE_10425 PF00156 Phosphoribosyl transferase domain THIAE_10440 PF01925 Sulfite exporter TauE/SafE THIAE_10445 PF14849 YidC periplasmic domain THIAE_10445 PF02096 60Kd inner membrane protein THIAE_10450 PF00825 Ribonuclease P THIAE_10455 PF00468 Ribosomal protein L34 THIAE_10460 PF02463 RecF/RecN/SMC N terminal domain THIAE_10465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_10465 PF01751 Toprim domain THIAE_10465 PF18053 DNA gyrase B subunit insert domain THIAE_10465 PF00986 DNA gyrase B subunit, carboxyl terminus THIAE_10465 PF00204 DNA gyrase B THIAE_10470 PF00485 Phosphoribulokinase / Uridine kinase family THIAE_10480 PF00512 His Kinase A (phospho-acceptor) domain THIAE_10480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THIAE_10485 PF01479 S4 domain THIAE_10490 PF01218 Coproporphyrinogen III oxidase THIAE_10495 PF01435 Peptidase family M48 THIAE_10495 PF07720 Tetratricopeptide repeat THIAE_10500 PF01926 50S ribosome-binding GTPase THIAE_10505 PF05140 ResB-like family THIAE_10510 PF01578 Cytochrome C assembly protein THIAE_10515 PF01323 DSBA-like thioredoxin domain THIAE_10520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THIAE_10520 PF00205 Thiamine pyrophosphate enzyme, central domain THIAE_10520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THIAE_10525 PF00881 Nitroreductase family THIAE_10530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIAE_10530 PF03466 LysR substrate binding domain THIAE_10540 PF12631 MnmE helical domain THIAE_10540 PF01926 50S ribosome-binding GTPase THIAE_10540 PF10396 GTP-binding protein TrmE N-terminus THIAE_10545 PF02028 BCCT, betaine/carnitine/choline family transporter THIAE_10550 PF01300 Telomere recombination THIAE_10555 PF00528 Binding-protein-dependent transport system inner membrane component THIAE_10565 PF08402 TOBE domain THIAE_10565 PF00005 ABC transporter THIAE_10575 PF13519 von Willebrand factor type A domain THIAE_10590 PF01882 Protein of unknown function DUF58 THIAE_10595 PF07726 ATPase family associated with various cellular activities (AAA) THIAE_10595 PF17863 AAA lid domain THIAE_10600 PF08003 Protein of unknown function (DUF1698) THIAE_10605 PF13649 Methyltransferase domain THIAE_10610 PF03466 LysR substrate binding domain THIAE_10610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THIAE_10615 PF02678 Pirin THIAE_10615 PF17954 Quercetinase C-terminal cupin domain THIAE_10620 PF03358 NADPH-dependent FMN reductase THIAE_10625 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain THIAE_10625 PF01464 Transglycosylase SLT domain THIAE_10640 PF07715 TonB-dependent Receptor Plug Domain THIAE_10640 PF00593 TonB dependent receptor THIAE_10645 PF01223 DNA/RNA non-specific endonuclease