locus-tag class description JX580_00005 PF00308 Bacterial dnaA protein JX580_00005 PF08299 Bacterial dnaA protein helix-turn-helix JX580_00005 PF11638 DnaA N-terminal domain JX580_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JX580_00010 PF02767 DNA polymerase III beta subunit, central domain JX580_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JX580_00015 PF00005 ABC transporter JX580_00020 PF03379 CcmB protein JX580_00025 PF01578 Cytochrome C assembly protein JX580_00035 PF03100 CcmE JX580_00040 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JX580_00040 PF01578 Cytochrome C assembly protein JX580_00045 PF08534 Redoxin JX580_00050 PF03918 Cytochrome C biogenesis protein JX580_00060 PF03264 NapC/NirT cytochrome c family, N-terminal region JX580_00065 PF00034 Cytochrome c JX580_00070 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding JX580_00070 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_00070 PF10518 TAT (twin-arginine translocation) pathway signal sequence JX580_00080 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_00080 PF10518 TAT (twin-arginine translocation) pathway signal sequence JX580_00080 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding JX580_00085 PF01068 ATP dependent DNA ligase domain JX580_00085 PF14743 DNA ligase OB-like domain JX580_00090 PF01380 SIS domain JX580_00095 PF06463 Molybdenum Cofactor Synthesis C JX580_00095 PF04055 Radical SAM superfamily JX580_00100 PF02597 ThiS family JX580_00105 PF02391 MoaE protein JX580_00110 PF03453 MoeA N-terminal region (domain I and II) JX580_00110 PF03454 MoeA C-terminal region (domain IV) JX580_00110 PF00994 Probable molybdopterin binding domain JX580_00115 PF01967 MoaC family JX580_00145 PF03755 YicC-like family, N-terminal region JX580_00145 PF08340 Domain of unknown function (DUF1732) JX580_00150 PF03725 3' exoribonuclease family, domain 2 JX580_00150 PF01138 3' exoribonuclease family, domain 1 JX580_00155 PF01725 Ham1 family JX580_00160 PF04055 Radical SAM superfamily JX580_00160 PF06969 HemN C-terminal domain JX580_00170 PF00270 DEAD/DEAH box helicase JX580_00170 PF00271 Helicase conserved C-terminal domain JX580_00180 PF01208 Uroporphyrinogen decarboxylase (URO-D) JX580_00185 PF01197 Ribosomal protein L31 JX580_00190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JX580_00190 PF07498 Rho termination factor, N-terminal domain JX580_00190 PF07497 Rho termination factor, RNA-binding domain JX580_00195 PF00085 Thioredoxin JX580_00200 PF13361 UvrD-like helicase C-terminal domain JX580_00200 PF00580 UvrD/REP helicase N-terminal domain JX580_00205 PF04345 Chorismate lyase JX580_00210 PF17191 RecG wedge domain JX580_00210 PF00271 Helicase conserved C-terminal domain JX580_00210 PF00270 DEAD/DEAH box helicase JX580_00215 PF01042 Endoribonuclease L-PSP JX580_00220 PF02824 TGS domain JX580_00220 PF04607 Region found in RelA / SpoT proteins JX580_00220 PF13291 ACT domain JX580_00225 PF01192 RNA polymerase Rpb6 JX580_00230 PF05552 Conserved TM helix JX580_00230 PF00924 Mechanosensitive ion channel JX580_00235 PF00132 Bacterial transferase hexapeptide (six repeats) JX580_00240 PF00730 HhH-GPD superfamily base excision DNA repair protein JX580_00240 PF14815 NUDIX domain JX580_00245 PF04362 Bacterial Fe(2+) trafficking JX580_00250 PF00563 EAL domain JX580_00250 PF08668 HDOD domain JX580_00270 PF00563 EAL domain JX580_00270 PF00990 Diguanylate cyclase, GGDEF domain JX580_00270 PF03707 Bacterial signalling protein N terminal repeat JX580_00275 PF00561 alpha/beta hydrolase fold JX580_00280 PF00679 Elongation factor G C-terminus JX580_00280 PF03144 Elongation factor Tu domain 2 JX580_00280 PF00009 Elongation factor Tu GTP binding domain JX580_00290 PF04143 Sulphur transport JX580_00295 PF00916 Sulfate permease family JX580_00295 PF01740 STAS domain JX580_00315 PF02607 B12 binding domain JX580_00315 PF00809 Pterin binding enzyme JX580_00315 PF02574 Homocysteine S-methyltransferase JX580_00315 PF02310 B12 binding domain JX580_00315 PF02965 Vitamin B12 dependent methionine synthase, activation domain JX580_00330 PF00128 Alpha amylase, catalytic domain JX580_00335 PF02595 Glycerate kinase family JX580_00340 PF00156 Phosphoribosyl transferase domain JX580_00345 PF06968 Biotin and Thiamin Synthesis associated domain JX580_00345 PF04055 Radical SAM superfamily JX580_00350 PF01263 Aldose 1-epimerase JX580_00370 PF01022 Bacterial regulatory protein, arsR family JX580_00380 PF00483 Nucleotidyl transferase JX580_00385 PF02397 Bacterial sugar transferase JX580_00390 PF05523 WxcM-like, C-terminal JX580_00405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JX580_00410 PF00535 Glycosyl transferase family 2 JX580_00420 PF00005 ABC transporter JX580_00420 PF00664 ABC transporter transmembrane region JX580_00475 PF00664 ABC transporter transmembrane region JX580_00475 PF00005 ABC transporter JX580_00485 PF00534 Glycosyl transferases group 1 JX580_00485 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JX580_00490 PF13580 SIS domain JX580_00495 PF01467 Cytidylyltransferase-like JX580_00495 PF00294 pfkB family carbohydrate kinase JX580_00500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JX580_00505 PF04932 O-Antigen ligase JX580_00510 PF00535 Glycosyl transferase family 2 JX580_00535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JX580_00535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JX580_00540 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain JX580_00540 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain JX580_00545 PF00101 Ribulose bisphosphate carboxylase, small chain JX580_00570 PF00936 BMC domain JX580_00575 PF00936 BMC domain JX580_00605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX580_00605 PF03466 LysR substrate binding domain JX580_00615 PF01725 Ham1 family JX580_00635 PF05166 YcgL domain JX580_00640 PF13460 NAD(P)H-binding JX580_00640 PF11066 Protein of unknown function (DUF2867) JX580_00645 PF12627 Probable RNA and SrmB- binding site of polymerase A JX580_00645 PF01743 Poly A polymerase head domain JX580_00645 PF01966 HD domain JX580_00660 PF00873 AcrB/AcrD/AcrF family JX580_00665 PF02780 Transketolase, C-terminal domain JX580_00665 PF00456 Transketolase, thiamine diphosphate binding domain JX580_00665 PF02779 Transketolase, pyrimidine binding domain JX580_00670 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JX580_00670 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JX580_00675 PF00162 Phosphoglycerate kinase JX580_00680 PF00224 Pyruvate kinase, barrel domain JX580_00680 PF02887 Pyruvate kinase, alpha/beta domain JX580_00685 PF01116 Fructose-bisphosphate aldolase class-II JX580_00690 PF05175 Methyltransferase small domain JX580_00700 PF00580 UvrD/REP helicase N-terminal domain JX580_00700 PF13361 UvrD-like helicase C-terminal domain JX580_00705 PF00465 Iron-containing alcohol dehydrogenase JX580_00730 PF01142 tRNA pseudouridine synthase D (TruD) JX580_00735 PF00672 HAMP domain JX580_00735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_00735 PF02203 Tar ligand binding domain homologue JX580_00740 PF01584 CheW-like domain JX580_00745 PF00672 HAMP domain JX580_00745 PF02203 Tar ligand binding domain homologue JX580_00745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_00750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_00750 PF02203 Tar ligand binding domain homologue JX580_00750 PF00672 HAMP domain JX580_00755 PF00270 DEAD/DEAH box helicase JX580_00755 PF00271 Helicase conserved C-terminal domain JX580_00760 PF11892 Domain of unknown function (DUF3412) JX580_00760 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JX580_00760 PF03641 Possible lysine decarboxylase JX580_00765 PF01556 DnaJ C terminal domain JX580_00765 PF00226 DnaJ domain JX580_00780 PF01502 Phosphoribosyl-AMP cyclohydrolase JX580_00790 PF03334 Na+/H+ antiporter subunit JX580_00795 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JX580_00805 PF00361 Proton-conducting membrane transporter JX580_00810 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JX580_00815 PF13244 Domain of unknown function (DUF4040) JX580_00815 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JX580_00815 PF00361 Proton-conducting membrane transporter JX580_00815 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JX580_00820 PF01613 Flavin reductase like domain JX580_00825 PF08274 PhnA Zinc-Ribbon JX580_00825 PF03831 PhnA domain JX580_00870 PF13333 Integrase core domain JX580_00870 PF00665 Integrase core domain JX580_00870 PF13276 HTH-like domain JX580_00880 PF00873 AcrB/AcrD/AcrF family JX580_00895 PF03480 Bacterial extracellular solute-binding protein, family 7 JX580_00905 PF02492 CobW/HypB/UreG, nucleotide-binding domain JX580_00910 PF01455 HupF/HypC family JX580_00915 PF01924 Hydrogenase formation hypA family JX580_00920 PF00586 AIR synthase related protein, N-terminal domain JX580_00920 PF02769 AIR synthase related protein, C-terminal domain JX580_00935 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA JX580_00940 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal JX580_00940 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JX580_00940 PF10518 TAT (twin-arginine translocation) pathway signal sequence JX580_00945 PF00374 Nickel-dependent hydrogenase JX580_00950 PF01750 Hydrogenase maturation protease JX580_00975 PF17788 HypF Kae1-like domain JX580_00975 PF00708 Acylphosphatase JX580_00975 PF01300 Telomere recombination JX580_00975 PF07503 HypF finger JX580_00980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX580_00980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JX580_00985 PF03880 DbpA RNA binding domain JX580_00985 PF00270 DEAD/DEAH box helicase JX580_00985 PF00271 Helicase conserved C-terminal domain JX580_01005 PF00072 Response regulator receiver domain JX580_01005 PF00486 Transcriptional regulatory protein, C terminal JX580_01010 PF00512 His Kinase A (phospho-acceptor) domain JX580_01010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_01010 PF00672 HAMP domain JX580_01015 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JX580_01015 PF01276 Orn/Lys/Arg decarboxylase, major domain JX580_01015 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JX580_01020 PF00892 EamA-like transporter family JX580_01030 PF04461 Protein of unknown function (DUF520) JX580_01040 PF00696 Amino acid kinase family JX580_01055 PF00156 Phosphoribosyl transferase domain JX580_01065 PF00667 FAD binding domain JX580_01065 PF00258 Flavodoxin JX580_01065 PF00175 Oxidoreductase NAD-binding domain JX580_01070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JX580_01070 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_01075 PF00310 Glutamine amidotransferases class-II JX580_01075 PF04898 Glutamate synthase central domain JX580_01075 PF01645 Conserved region in glutamate synthase JX580_01075 PF01493 GXGXG motif JX580_01080 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JX580_01080 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JX580_01085 PF01676 Metalloenzyme superfamily JX580_01085 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JX580_01090 PF00581 Rhodanese-like domain JX580_01095 PF00462 Glutaredoxin JX580_01100 PF02556 Preprotein translocase subunit SecB JX580_01105 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JX580_01105 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JX580_01110 PF00588 SpoU rRNA Methylase family JX580_01115 PF01180 Dihydroorotate dehydrogenase JX580_01120 PF00579 tRNA synthetases class I (W and Y) JX580_01120 PF01479 S4 domain JX580_01225 PF03309 Type III pantothenate kinase JX580_01235 PF07977 FabA-like domain JX580_01240 PF00109 Beta-ketoacyl synthase, N-terminal domain JX580_01240 PF02801 Beta-ketoacyl synthase, C-terminal domain JX580_01245 PF01118 Semialdehyde dehydrogenase, NAD binding domain JX580_01245 PF02774 Semialdehyde dehydrogenase, dimerisation domain JX580_01250 PF01521 Iron-sulphur cluster biosynthesis JX580_01255 PF00285 Citrate synthase, C-terminal domain JX580_01260 PF00572 Ribosomal protein L13 JX580_01265 PF00380 Ribosomal protein S9/S16 JX580_01270 PF13426 PAS domain JX580_01270 PF01740 STAS domain JX580_01275 PF13411 MerR HTH family regulatory protein JX580_01280 PF00875 DNA photolyase JX580_01280 PF03441 FAD binding domain of DNA photolyase JX580_01305 PF01593 Flavin containing amine oxidoreductase JX580_01310 PF00106 short chain dehydrogenase JX580_01340 PF09704 CRISPR-associated protein (Cas_Cas5) JX580_01360 PF01867 CRISPR associated protein Cas1 JX580_01365 PF09827 CRISPR associated protein Cas2 JX580_01370 PF05973 Phage derived protein Gp49-like (DUF891) JX580_01390 PF00950 ABC 3 transport family JX580_01395 PF00005 ABC transporter JX580_01400 PF01297 Zinc-uptake complex component A periplasmic JX580_01410 PF01458 Uncharacterized protein family (UPF0051) JX580_01415 PF00005 ABC transporter JX580_01420 PF01458 Uncharacterized protein family (UPF0051) JX580_01425 PF00266 Aminotransferase class-V JX580_01435 PF00486 Transcriptional regulatory protein, C terminal JX580_01435 PF00072 Response regulator receiver domain JX580_01440 PF08447 PAS fold JX580_01440 PF08447 PAS fold JX580_01440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_01440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_01445 PF09308 LuxQ, periplasmic JX580_01445 PF00072 Response regulator receiver domain JX580_01445 PF00512 His Kinase A (phospho-acceptor) domain JX580_01450 PF01627 Hpt domain JX580_01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_01450 PF00512 His Kinase A (phospho-acceptor) domain JX580_01450 PF00989 PAS fold JX580_01450 PF00072 Response regulator receiver domain JX580_01450 PF00497 Bacterial extracellular solute-binding proteins, family 3 JX580_01455 PF00563 EAL domain JX580_01455 PF00990 Diguanylate cyclase, GGDEF domain JX580_01455 PF03707 Bacterial signalling protein N terminal repeat JX580_01460 PF00072 Response regulator receiver domain JX580_01460 PF01627 Hpt domain JX580_01460 PF00672 HAMP domain JX580_01460 PF00512 His Kinase A (phospho-acceptor) domain JX580_01460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_01460 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_01465 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_01465 PF00072 Response regulator receiver domain JX580_01465 PF01627 Hpt domain JX580_01465 PF00512 His Kinase A (phospho-acceptor) domain JX580_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_01465 PF00672 HAMP domain JX580_01470 PF08245 Mur ligase middle domain JX580_01470 PF02875 Mur ligase family, glutamate ligase domain JX580_01470 PF01225 Mur ligase family, catalytic domain JX580_01475 PF01820 D-ala D-ala ligase N-terminus JX580_01475 PF07478 D-ala D-ala ligase C-terminus JX580_01485 PF02491 SHS2 domain inserted in FTSA JX580_01490 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JX580_01500 PF02810 SEC-C motif JX580_01500 PF07517 SecA DEAD-like domain JX580_01500 PF01043 SecA preprotein cross-linking domain JX580_01500 PF07516 SecA Wing and Scaffold domain JX580_01505 PF01960 ArgJ family JX580_01510 PF02581 Thiamine monophosphate synthase JX580_01515 PF01121 Dephospho-CoA kinase JX580_01525 PF01467 Cytidylyltransferase-like JX580_01530 PF00689 Cation transporting ATPase, C-terminus JX580_01530 PF00690 Cation transporter/ATPase, N-terminus JX580_01540 PF06827 Zinc finger found in FPG and IleRS JX580_01540 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JX580_01540 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JX580_01545 PF01370 NAD dependent epimerase/dehydratase family JX580_01545 PF08338 Domain of unknown function (DUF1731) JX580_01555 PF02203 Tar ligand binding domain homologue JX580_01555 PF00672 HAMP domain JX580_01555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_01560 PF00691 OmpA family JX580_01565 PF05958 tRNA (Uracil-5-)-methyltransferase JX580_01565 PF01938 TRAM domain JX580_01590 PF01636 Phosphotransferase enzyme family JX580_01605 PF01790 Prolipoprotein diacylglyceryl transferase JX580_01610 PF00303 Thymidylate synthase JX580_01615 PF00186 Dihydrofolate reductase JX580_01620 PF00816 H-NS histone family JX580_01625 PF00072 Response regulator receiver domain JX580_01630 PF05698 Bacterial trigger factor protein (TF) C-terminus JX580_01635 PF01784 NIF3 (NGG1p interacting factor 3) JX580_01645 PF02630 SCO1/SenC JX580_01655 PF00210 Ferritin-like domain JX580_01660 PF02021 Uncharacterised protein family UPF0102 JX580_01665 PF04348 LppC putative lipoprotein JX580_01670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JX580_01680 PF02381 MraZ protein, putative antitoxin-like JX580_01685 PF01795 MraW methylase family JX580_01690 PF12327 FtsZ family, C-terminal domain JX580_01690 PF00091 Tubulin/FtsZ family, GTPase domain JX580_01700 PF03717 Penicillin-binding Protein dimerisation domain JX580_01700 PF00905 Penicillin binding protein transpeptidase domain JX580_01705 PF08245 Mur ligase middle domain JX580_01705 PF01225 Mur ligase family, catalytic domain JX580_01705 PF02875 Mur ligase family, glutamate ligase domain JX580_01710 PF01225 Mur ligase family, catalytic domain JX580_01710 PF08245 Mur ligase middle domain JX580_01710 PF02875 Mur ligase family, glutamate ligase domain JX580_01715 PF00953 Glycosyl transferase family 4 JX580_01720 PF02875 Mur ligase family, glutamate ligase domain JX580_01720 PF08245 Mur ligase middle domain JX580_01725 PF01098 Cell cycle protein JX580_01730 PF04101 Glycosyltransferase family 28 C-terminal domain JX580_01730 PF03033 Glycosyltransferase family 28 N-terminal domain JX580_01740 PF17158 Membrane-associated sensor, integral membrane domain JX580_01740 PF00990 Diguanylate cyclase, GGDEF domain JX580_01745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_01745 PF08447 PAS fold JX580_01745 PF08447 PAS fold JX580_01745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_01760 PF13180 PDZ domain JX580_01760 PF03572 Peptidase family S41 JX580_01765 PF01965 DJ-1/PfpI family JX580_01770 PF03707 Bacterial signalling protein N terminal repeat JX580_01770 PF00563 EAL domain JX580_01770 PF00990 Diguanylate cyclase, GGDEF domain JX580_01775 PF03631 Virulence factor BrkB JX580_01785 PF04452 RNA methyltransferase JX580_01790 PF02219 Methylenetetrahydrofolate reductase JX580_01795 PF02773 S-adenosylmethionine synthetase, C-terminal domain JX580_01795 PF02772 S-adenosylmethionine synthetase, central domain JX580_01795 PF00438 S-adenosylmethionine synthetase, N-terminal domain JX580_01825 PF01584 CheW-like domain JX580_01825 PF00072 Response regulator receiver domain JX580_01835 PF00460 Flagella basal body rod protein JX580_01840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JX580_01840 PF00460 Flagella basal body rod protein JX580_01850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JX580_01850 PF00460 Flagella basal body rod protein JX580_01850 PF07559 Flagellar basal body protein FlaE JX580_01855 PF02547 Queuosine biosynthesis protein JX580_01860 PF01702 Queuine tRNA-ribosyltransferase JX580_01865 PF02699 Preprotein translocase subunit JX580_01870 PF02355 Protein export membrane protein JX580_01870 PF07549 SecD/SecF GG Motif JX580_01870 PF13721 SecD export protein N-terminal TM region JX580_01875 PF07549 SecD/SecF GG Motif JX580_01875 PF02355 Protein export membrane protein JX580_01880 PF00009 Elongation factor Tu GTP binding domain JX580_01880 PF03144 Elongation factor Tu domain 2 JX580_01880 PF16658 Class II release factor RF3, C-terminal domain JX580_01895 PF00211 Adenylate and Guanylate cyclase catalytic domain JX580_01895 PF00072 Response regulator receiver domain JX580_01910 PF13361 UvrD-like helicase C-terminal domain JX580_01910 PF12705 PD-(D/E)XK nuclease superfamily JX580_01910 PF00580 UvrD/REP helicase N-terminal domain JX580_01925 PF00563 EAL domain JX580_01925 PF08668 HDOD domain JX580_01930 PF00924 Mechanosensitive ion channel JX580_01935 PF00391 PEP-utilising enzyme, mobile domain JX580_01935 PF02896 PEP-utilising enzyme, TIM barrel domain JX580_01935 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JX580_01940 PF00202 Aminotransferase class-III JX580_01945 PF02581 Thiamine monophosphate synthase JX580_01955 PF08534 Redoxin JX580_01960 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JX580_01965 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JX580_01965 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JX580_01970 PF00202 Aminotransferase class-III JX580_01975 PF01063 Amino-transferase class IV JX580_02000 PF00593 TonB dependent receptor JX580_02000 PF07715 TonB-dependent Receptor Plug Domain JX580_02005 PF00365 Phosphofructokinase JX580_02010 PF00570 HRDC domain JX580_02010 PF01612 3'-5' exonuclease JX580_02020 PF00460 Flagella basal body rod protein JX580_02020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JX580_02025 PF02107 Flagellar L-ring protein JX580_02030 PF02119 Flagellar P-ring protein JX580_02035 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JX580_02035 PF10135 Rod binding protein JX580_02045 PF00700 Bacterial flagellin C-terminal helical region JX580_02045 PF00669 Bacterial flagellin N-terminal helical region JX580_02050 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JX580_02050 PF01464 Transglycosylase SLT domain JX580_02055 PF02719 Polysaccharide biosynthesis protein JX580_02060 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JX580_02075 PF02348 Cytidylyltransferase JX580_02085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JX580_02085 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JX580_02090 PF03102 NeuB family JX580_02090 PF08666 SAF domain JX580_02100 PF00501 AMP-binding enzyme JX580_02100 PF13193 AMP-binding enzyme C-terminal domain JX580_02115 PF00700 Bacterial flagellin C-terminal helical region JX580_02115 PF00669 Bacterial flagellin N-terminal helical region JX580_02120 PF00700 Bacterial flagellin C-terminal helical region JX580_02120 PF00669 Bacterial flagellin N-terminal helical region JX580_02125 PF00669 Bacterial flagellin N-terminal helical region JX580_02125 PF00700 Bacterial flagellin C-terminal helical region JX580_02140 PF07195 Flagellar hook-associated protein 2 C-terminus JX580_02140 PF02465 Flagellar hook-associated protein 2 N-terminus JX580_02165 PF00155 Aminotransferase class I and II JX580_02170 PF00271 Helicase conserved C-terminal domain JX580_02170 PF04851 Type III restriction enzyme, res subunit JX580_02170 PF02151 UvrB/uvrC motif JX580_02170 PF12344 Ultra-violet resistance protein B JX580_02170 PF17757 UvrB interaction domain JX580_02185 PF00246 Zinc carboxypeptidase JX580_02190 PF00437 Type II/IV secretion system protein JX580_02195 PF00158 Sigma-54 interaction domain JX580_02195 PF00072 Response regulator receiver domain JX580_02195 PF02954 Bacterial regulatory protein, Fis family JX580_02205 PF02789 Cytosol aminopeptidase family, N-terminal domain JX580_02205 PF00883 Cytosol aminopeptidase family, catalytic domain JX580_02210 PF03739 Lipopolysaccharide export system permease LptF/LptG JX580_02215 PF03739 Lipopolysaccharide export system permease LptF/LptG JX580_02220 PF01384 Phosphate transporter family JX580_02225 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JX580_02255 PF00361 Proton-conducting membrane transporter JX580_02260 PF00361 Proton-conducting membrane transporter JX580_02265 PF00361 Proton-conducting membrane transporter JX580_02280 PF16200 C-terminal region of band_7 JX580_02280 PF01145 SPFH domain / Band 7 family JX580_02295 PF00589 Phage integrase family JX580_02295 PF13356 Arm DNA-binding domain JX580_02360 PF02796 Helix-turn-helix domain of resolvase JX580_02360 PF00239 Resolvase, N terminal domain JX580_02370 PF03167 Uracil DNA glycosylase superfamily JX580_02375 PF01243 Pyridoxamine 5'-phosphate oxidase JX580_02375 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JX580_02380 PF01751 Toprim domain JX580_02380 PF00204 DNA gyrase B JX580_02380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_02380 PF00986 DNA gyrase B subunit, carboxyl terminus JX580_02395 PF14572 Phosphoribosyl synthetase-associated domain JX580_02395 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JX580_02400 PF14693 Ribosomal protein TL5, C-terminal domain JX580_02400 PF01386 Ribosomal L25p family JX580_02405 PF01195 Peptidyl-tRNA hydrolase JX580_02410 PF01926 50S ribosome-binding GTPase JX580_02410 PF06071 Protein of unknown function (DUF933) JX580_02425 PF12111 Polyribonucleotide phosphorylase C terminal JX580_02425 PF00575 S1 RNA binding domain JX580_02425 PF10150 Ribonuclease E/G family JX580_02430 PF00849 RNA pseudouridylate synthase JX580_02430 PF01479 S4 domain JX580_02435 PF13419 Haloacid dehalogenase-like hydrolase JX580_02440 PF02545 Maf-like protein JX580_02445 PF02620 Large ribosomal RNA subunit accumulation protein YceD JX580_02450 PF01783 Ribosomal L32p protein family JX580_02455 PF02504 Fatty acid synthesis protein JX580_02460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JX580_02460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JX580_02465 PF00698 Acyl transferase domain JX580_02475 PF00550 Phosphopantetheine attachment site JX580_02480 PF00109 Beta-ketoacyl synthase, N-terminal domain JX580_02480 PF02801 Beta-ketoacyl synthase, C-terminal domain JX580_02485 PF04715 Anthranilate synthase component I, N terminal region JX580_02485 PF00425 chorismate binding enzyme JX580_02490 PF01063 Amino-transferase class IV JX580_02500 PF12170 DNA polymerase III tau subunit V interacting with alpha JX580_02500 PF12169 DNA polymerase III subunits gamma and tau domain III JX580_02505 PF02575 YbaB/EbfC DNA-binding family JX580_02510 PF02132 RecR protein JX580_02510 PF13662 Toprim domain JX580_02525 PF03109 ABC1 family JX580_02535 PF01209 ubiE/COQ5 methyltransferase family JX580_02555 PF00004 ATPase family associated with various cellular activities (AAA) JX580_02555 PF07724 AAA domain (Cdc48 subfamily) JX580_02555 PF10431 C-terminal, D2-small domain, of ClpB protein JX580_02565 PF01678 Diaminopimelate epimerase JX580_02575 PF00589 Phage integrase family JX580_02575 PF02899 Phage integrase, N-terminal SAM-like domain JX580_02580 PF00227 Proteasome subunit JX580_02590 PF10119 Predicted methyltransferase regulatory domain JX580_02590 PF13847 Methyltransferase domain JX580_02605 PF18030 RimK PreATP-grasp domain JX580_02605 PF08443 RimK-like ATP-grasp domain JX580_02610 PF18030 RimK PreATP-grasp domain JX580_02610 PF08443 RimK-like ATP-grasp domain JX580_02620 PF09308 LuxQ, periplasmic JX580_02620 PF00072 Response regulator receiver domain JX580_02620 PF00512 His Kinase A (phospho-acceptor) domain JX580_02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_02625 PF00563 EAL domain JX580_02625 PF00990 Diguanylate cyclase, GGDEF domain JX580_02625 PF03707 Bacterial signalling protein N terminal repeat JX580_02630 PF09308 LuxQ, periplasmic JX580_02630 PF00512 His Kinase A (phospho-acceptor) domain JX580_02630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_02630 PF00072 Response regulator receiver domain JX580_02635 PF00672 HAMP domain JX580_02635 PF00512 His Kinase A (phospho-acceptor) domain JX580_02635 PF01627 Hpt domain JX580_02635 PF00072 Response regulator receiver domain JX580_02635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_02635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_02640 PF13188 PAS domain JX580_02640 PF03707 Bacterial signalling protein N terminal repeat JX580_02640 PF00563 EAL domain JX580_02640 PF00990 Diguanylate cyclase, GGDEF domain JX580_02650 PF00085 Thioredoxin JX580_02655 PF05188 MutS domain II JX580_02655 PF05192 MutS domain III JX580_02655 PF05190 MutS family domain IV JX580_02655 PF00488 MutS domain V JX580_02655 PF01624 MutS domain I JX580_02660 PF00072 Response regulator receiver domain JX580_02660 PF00486 Transcriptional regulatory protein, C terminal JX580_02665 PF02798 Glutathione S-transferase, N-terminal domain JX580_02665 PF00043 Glutathione S-transferase, C-terminal domain JX580_02670 PF04386 Stringent starvation protein B JX580_02690 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JX580_02690 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JX580_02695 PF01070 FMN-dependent dehydrogenase JX580_02705 PF00072 Response regulator receiver domain JX580_02705 PF01627 Hpt domain JX580_02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_02705 PF00672 HAMP domain JX580_02705 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_02705 PF00512 His Kinase A (phospho-acceptor) domain JX580_02710 PF02824 TGS domain JX580_02710 PF03129 Anticodon binding domain JX580_02710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JX580_02710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JX580_02715 PF00707 Translation initiation factor IF-3, C-terminal domain JX580_02715 PF05198 Translation initiation factor IF-3, N-terminal domain JX580_02720 PF01632 Ribosomal protein L35 JX580_02725 PF00453 Ribosomal protein L20 JX580_02730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JX580_02730 PF01409 tRNA synthetases class II core domain (F) JX580_02735 PF01588 Putative tRNA binding domain JX580_02735 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JX580_02735 PF03484 tRNA synthetase B5 domain JX580_02735 PF03483 B3/4 domain JX580_02735 PF03147 Ferredoxin-fold anticodon binding domain JX580_02740 PF00216 Bacterial DNA-binding protein JX580_02765 PF03989 DNA gyrase C-terminal domain, beta-propeller JX580_02765 PF00521 DNA gyrase/topoisomerase IV, subunit A JX580_02770 PF01618 MotA/TolQ/ExbB proton channel family JX580_02775 PF00691 OmpA family JX580_02775 PF13677 Membrane MotB of proton-channel complex MotA/MotB JX580_02790 PF00330 Aconitase family (aconitate hydratase) JX580_02795 PF00694 Aconitase C-terminal domain JX580_02800 PF00180 Isocitrate/isopropylmalate dehydrogenase JX580_02805 PF04225 Opacity-associated protein A LysM-like domain JX580_02805 PF01551 Peptidase family M23 JX580_02815 PF01118 Semialdehyde dehydrogenase, NAD binding domain JX580_02815 PF02774 Semialdehyde dehydrogenase, dimerisation domain JX580_02820 PF01416 tRNA pseudouridine synthase JX580_02825 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JX580_02830 PF00291 Pyridoxal-phosphate dependent enzyme JX580_02835 PF00290 Tryptophan synthase alpha chain JX580_02840 PF17848 Acetyl-coA carboxylase zinc finger domain JX580_02840 PF01039 Carboxyl transferase domain JX580_02845 PF02875 Mur ligase family, glutamate ligase domain JX580_02845 PF08245 Mur ligase middle domain JX580_02855 PF00156 Phosphoribosyl transferase domain JX580_02860 PF01053 Cys/Met metabolism PLP-dependent enzyme JX580_02865 PF01985 CRS1 / YhbY (CRM) domain JX580_02870 PF01728 FtsJ-like methyltransferase JX580_02875 PF00004 ATPase family associated with various cellular activities (AAA) JX580_02875 PF17862 AAA+ lid domain JX580_02875 PF06480 FtsH Extracellular JX580_02875 PF01434 Peptidase family M41 JX580_02880 PF00809 Pterin binding enzyme JX580_02885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JX580_02885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JX580_02885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JX580_02885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JX580_02890 PF00121 Triosephosphate isomerase JX580_02895 PF03840 Preprotein translocase SecG subunit JX580_02905 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JX580_02910 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JX580_02915 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JX580_02920 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JX580_02930 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JX580_02930 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JX580_02930 PF10531 SLBB domain JX580_02935 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal JX580_02935 PF00384 Molybdopterin oxidoreductase JX580_02935 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JX580_02940 PF00146 NADH dehydrogenase JX580_02945 PF12838 4Fe-4S dicluster domain JX580_02950 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JX580_02955 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JX580_02960 PF00361 Proton-conducting membrane transporter JX580_02960 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JX580_02965 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus JX580_02965 PF00361 Proton-conducting membrane transporter JX580_02970 PF00361 Proton-conducting membrane transporter JX580_02990 PF00291 Pyridoxal-phosphate dependent enzyme JX580_02990 PF00585 C-terminal regulatory domain of Threonine dehydratase JX580_03010 PF00005 ABC transporter JX580_03015 PF13472 GDSL-like Lipase/Acylhydrolase family JX580_03025 PF02321 Outer membrane efflux protein JX580_03030 PF00873 AcrB/AcrD/AcrF family JX580_03035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JX580_03130 PF03702 Anhydro-N-acetylmuramic acid kinase JX580_03135 PF01551 Peptidase family M23 JX580_03135 PF04225 Opacity-associated protein A LysM-like domain JX580_03140 PF00581 Rhodanese-like domain JX580_03140 PF01206 Sulfurtransferase TusA JX580_03145 PF02091 Glycyl-tRNA synthetase alpha subunit JX580_03150 PF05746 DALR anticodon binding domain JX580_03150 PF02092 Glycyl-tRNA synthetase beta subunit JX580_03160 PF01553 Acyltransferase JX580_03160 PF00501 AMP-binding enzyme JX580_03160 PF13193 AMP-binding enzyme C-terminal domain JX580_03165 PF01618 MotA/TolQ/ExbB proton channel family JX580_03170 PF13677 Membrane MotB of proton-channel complex MotA/MotB JX580_03170 PF00691 OmpA family JX580_03175 PF13677 Membrane MotB of proton-channel complex MotA/MotB JX580_03175 PF00691 OmpA family JX580_03185 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JX580_03190 PF01810 LysE type translocator JX580_03195 PF00578 AhpC/TSA family JX580_03200 PF01625 Peptide methionine sulfoxide reductase JX580_03205 PF00268 Ribonucleotide reductase, small chain JX580_03210 PF03477 ATP cone domain JX580_03210 PF02867 Ribonucleotide reductase, barrel domain JX580_03210 PF00317 Ribonucleotide reductase, all-alpha domain JX580_03215 PF00990 Diguanylate cyclase, GGDEF domain JX580_03220 PF03459 TOBE domain JX580_03220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX580_03230 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JX580_03235 PF00005 ABC transporter JX580_03235 PF12399 Branched-chain amino acid ATP-binding cassette transporter JX580_03255 PF01699 Sodium/calcium exchanger protein JX580_03265 PF00005 ABC transporter JX580_03270 PF02405 Permease MlaE JX580_03275 PF02470 MlaD protein JX580_03290 PF00005 ABC transporter JX580_03295 PF01061 ABC-2 type transporter JX580_03305 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JX580_03310 PF01634 ATP phosphoribosyltransferase JX580_03315 PF00815 Histidinol dehydrogenase JX580_03320 PF00155 Aminotransferase class I and II JX580_03325 PF01784 NIF3 (NGG1p interacting factor 3) JX580_03330 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JX580_03330 PF00355 Rieske [2Fe-2S] domain JX580_03335 PF00032 Cytochrome b(C-terminal)/b6/petD JX580_03335 PF00033 Cytochrome b/b6/petB JX580_03340 PF02167 Cytochrome C1 family JX580_03345 PF18073 Rubredoxin metal binding domain JX580_03350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_03350 PF00512 His Kinase A (phospho-acceptor) domain JX580_03350 PF09308 LuxQ, periplasmic JX580_03350 PF00072 Response regulator receiver domain JX580_03355 PF00459 Inositol monophosphatase family JX580_03360 PF01595 Cyclin M transmembrane N-terminal domain JX580_03360 PF00571 CBS domain JX580_03360 PF03471 Transporter associated domain JX580_03370 PF02978 Signal peptide binding domain JX580_03370 PF02881 SRP54-type protein, helical bundle domain JX580_03370 PF00448 SRP54-type protein, GTPase domain JX580_03375 PF00886 Ribosomal protein S16 JX580_03380 PF05239 PRC-barrel domain JX580_03380 PF01782 RimM N-terminal domain JX580_03385 PF01746 tRNA (Guanine-1)-methyltransferase JX580_03390 PF01245 Ribosomal protein L19 JX580_03405 PF00005 ABC transporter JX580_03405 PF00664 ABC transporter transmembrane region JX580_03410 PF02190 ATP-dependent protease La (LON) substrate-binding domain JX580_03410 PF05362 Lon protease (S16) C-terminal proteolytic domain JX580_03410 PF00004 ATPase family associated with various cellular activities (AAA) JX580_03415 PF00994 Probable molybdopterin binding domain JX580_03420 PF05175 Methyltransferase small domain JX580_03425 PF00194 Eukaryotic-type carbonic anhydrase JX580_03430 PF01264 Chorismate synthase JX580_03435 PF12832 MFS_1 like family JX580_03440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JX580_03445 PF06865 Pyrimidine/purine nucleoside phosphorylase JX580_03455 PF00579 tRNA synthetases class I (W and Y) JX580_03460 PF03544 Gram-negative bacterial TonB protein C-terminal JX580_03465 PF02472 Biopolymer transport protein ExbD/TolR JX580_03470 PF01618 MotA/TolQ/ExbB proton channel family JX580_03475 PF04241 Protein of unknown function (DUF423) JX580_03485 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JX580_03490 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding JX580_03490 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_03490 PF10518 TAT (twin-arginine translocation) pathway signal sequence JX580_03515 PF01225 Mur ligase family, catalytic domain JX580_03515 PF02875 Mur ligase family, glutamate ligase domain JX580_03515 PF08245 Mur ligase middle domain JX580_03530 PF00849 RNA pseudouridylate synthase JX580_03535 PF01451 Low molecular weight phosphotyrosine protein phosphatase JX580_03540 PF02743 Cache domain JX580_03540 PF00672 HAMP domain JX580_03540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_03545 PF01339 CheB methylesterase JX580_03545 PF00072 Response regulator receiver domain JX580_03550 PF01739 CheR methyltransferase, SAM binding domain JX580_03550 PF03705 CheR methyltransferase, all-alpha domain JX580_03560 PF00072 Response regulator receiver domain JX580_03580 PF02618 YceG-like family JX580_03585 PF02223 Thymidylate kinase JX580_03590 PF09115 DNA polymerase III, delta subunit, C terminal JX580_03595 PF01026 TatD related DNase JX580_03600 PF00664 ABC transporter transmembrane region JX580_03600 PF00005 ABC transporter JX580_03610 PF04357 TamB, inner membrane protein subunit of TAM complex JX580_03625 PF03695 Uncharacterised protein family (UPF0149) JX580_03630 PF05195 Aminopeptidase P, N-terminal domain JX580_03630 PF00557 Metallopeptidase family M24 JX580_03635 PF01494 FAD binding domain JX580_03640 PF01494 FAD binding domain JX580_03645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX580_03645 PF03466 LysR substrate binding domain JX580_03655 PF00753 Metallo-beta-lactamase superfamily JX580_03675 PF00909 Ammonium Transporter Family JX580_03680 PF00543 Nitrogen regulatory protein P-II JX580_03685 PF08335 GlnD PII-uridylyltransferase JX580_03685 PF03710 Glutamate-ammonia ligase adenylyltransferase JX580_03700 PF05818 Enterobacterial TraT complement resistance protein JX580_03725 PF00633 Helix-hairpin-helix motif JX580_03725 PF00730 HhH-GPD superfamily base excision DNA repair protein JX580_03725 PF10576 Iron-sulfur binding domain of endonuclease III JX580_03730 PF02508 Rnf-Nqr subunit, membrane protein JX580_03735 PF04205 FMN-binding domain JX580_03740 PF03116 NQR2, RnfD, RnfE family JX580_03745 PF13375 RnfC Barrel sandwich hybrid domain JX580_03745 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JX580_03745 PF12838 4Fe-4S dicluster domain JX580_03745 PF10531 SLBB domain JX580_03750 PF04060 Putative Fe-S cluster JX580_03755 PF02508 Rnf-Nqr subunit, membrane protein JX580_03760 PF01588 Putative tRNA binding domain JX580_03760 PF09334 tRNA synthetases class I (M) JX580_03765 PF10609 NUBPL iron-transfer P-loop NTPase JX580_03770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JX580_03770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JX580_03770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JX580_03770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JX580_03775 PF00692 dUTPase JX580_03785 PF00551 Formyl transferase JX580_03790 PF00586 AIR synthase related protein, N-terminal domain JX580_03790 PF02769 AIR synthase related protein, C-terminal domain JX580_03800 PF00308 Bacterial dnaA protein JX580_03805 PF08534 Redoxin JX580_03835 PF03129 Anticodon binding domain JX580_03835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JX580_03835 PF04073 Aminoacyl-tRNA editing domain JX580_03840 PF02913 FAD linked oxidases, C-terminal domain JX580_03840 PF01565 FAD binding domain JX580_03840 PF13183 4Fe-4S dicluster domain JX580_03845 PF02545 Maf-like protein JX580_03850 PF10150 Ribonuclease E/G family JX580_03850 PF00575 S1 RNA binding domain JX580_03880 PF01471 Putative peptidoglycan binding domain JX580_03880 PF13401 AAA domain JX580_03885 PF03958 Bacterial type II/III secretion system short domain JX580_03885 PF00263 Bacterial type II and III secretion system protein JX580_03895 PF00437 Type II/IV secretion system protein JX580_03895 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JX580_03900 PF00482 Type II secretion system (T2SS), protein F JX580_03920 PF13686 DsrE/DsrF/DrsH-like family JX580_03925 PF00072 Response regulator receiver domain JX580_03925 PF00158 Sigma-54 interaction domain JX580_03925 PF02954 Bacterial regulatory protein, Fis family JX580_03930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_03930 PF00512 His Kinase A (phospho-acceptor) domain JX580_03930 PF00989 PAS fold JX580_03940 PF13609 Gram-negative porin JX580_03950 PF00005 ABC transporter JX580_03950 PF16326 ABC transporter C-terminal domain JX580_03950 PF12848 ABC transporter JX580_03955 PF07733 Bacterial DNA polymerase III alpha NTPase domain JX580_03955 PF02811 PHP domain JX580_03955 PF01336 OB-fold nucleic acid binding domain JX580_03955 PF14579 Helix-hairpin-helix motif JX580_03955 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JX580_03960 PF13193 AMP-binding enzyme C-terminal domain JX580_03960 PF00501 AMP-binding enzyme JX580_03960 PF16177 Acetyl-coenzyme A synthetase N-terminus JX580_03970 PF00474 Sodium:solute symporter family JX580_03975 PF17191 RecG wedge domain JX580_03975 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JX580_03975 PF00270 DEAD/DEAH box helicase JX580_03980 PF17761 DUF1016 N-terminal domain JX580_03980 PF06250 YhcG PDDEXK nuclease domain JX580_03995 PF17384 RimP C-terminal SH3 domain JX580_03995 PF02576 RimP N-terminal domain JX580_04000 PF00575 S1 RNA binding domain JX580_04000 PF08529 NusA N-terminal domain JX580_04000 PF13184 NusA-like KH domain JX580_04005 PF04760 Translation initiation factor IF-2, N-terminal region JX580_04005 PF08364 Bacterial translation initiation factor IF-2 associated region JX580_04005 PF11987 Translation-initiation factor 2 JX580_04005 PF00009 Elongation factor Tu GTP binding domain JX580_04010 PF02033 Ribosome-binding factor A JX580_04015 PF01509 TruB family pseudouridylate synthase (N terminal domain) JX580_04015 PF16198 tRNA pseudouridylate synthase B C-terminal domain JX580_04015 PF09157 Pseudouridine synthase II TruB, C-terminal JX580_04020 PF03848 Tellurite resistance protein TehB JX580_04030 PF00312 Ribosomal protein S15 JX580_04035 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JX580_04035 PF01138 3' exoribonuclease family, domain 1 JX580_04035 PF03725 3' exoribonuclease family, domain 2 JX580_04035 PF00575 S1 RNA binding domain JX580_04035 PF00013 KH domain JX580_04040 PF08367 Peptidase M16C associated JX580_04040 PF00675 Insulinase (Peptidase family M16) JX580_04040 PF05193 Peptidase M16 inactive domain JX580_04050 PF17871 AAA lid domain JX580_04050 PF10431 C-terminal, D2-small domain, of ClpB protein JX580_04050 PF02861 Clp amino terminal domain, pathogenicity island component JX580_04050 PF00004 ATPase family associated with various cellular activities (AAA) JX580_04050 PF07724 AAA domain (Cdc48 subfamily) JX580_04070 PF13629 Pilus formation protein N terminal region JX580_04070 PF04972 BON domain JX580_04070 PF00263 Bacterial type II and III secretion system protein JX580_04080 PF00437 Type II/IV secretion system protein JX580_04105 PF03707 Bacterial signalling protein N terminal repeat JX580_04105 PF00990 Diguanylate cyclase, GGDEF domain JX580_04105 PF00563 EAL domain JX580_04110 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) JX580_04110 PF06594 Haemolysin-type calcium binding protein related domain JX580_04120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JX580_04125 PF00528 Binding-protein-dependent transport system inner membrane component JX580_04130 PF00528 Binding-protein-dependent transport system inner membrane component JX580_04130 PF12911 N-terminal TM domain of oligopeptide transport permease C JX580_04155 PF00005 ABC transporter JX580_04155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JX580_04215 PF12843 Putative quorum-sensing-regulated virulence factor JX580_04225 PF00990 Diguanylate cyclase, GGDEF domain JX580_04225 PF08448 PAS fold JX580_04240 PF13419 Haloacid dehalogenase-like hydrolase JX580_04250 PF03989 DNA gyrase C-terminal domain, beta-propeller JX580_04250 PF00521 DNA gyrase/topoisomerase IV, subunit A JX580_04255 PF00266 Aminotransferase class-V JX580_04260 PF01842 ACT domain JX580_04260 PF01817 Chorismate mutase type II JX580_04260 PF00800 Prephenate dehydratase JX580_04265 PF00155 Aminotransferase class I and II JX580_04270 PF02153 Prephenate dehydrogenase JX580_04275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JX580_04280 PF02224 Cytidylate kinase JX580_04285 PF00575 S1 RNA binding domain JX580_04290 PF00216 Bacterial DNA-binding protein JX580_04300 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JX580_04305 PF01250 Ribosomal protein S6 JX580_04310 PF01084 Ribosomal protein S18 JX580_04320 PF01281 Ribosomal protein L9, N-terminal domain JX580_04320 PF03948 Ribosomal protein L9, C-terminal domain JX580_04325 PF00528 Binding-protein-dependent transport system inner membrane component JX580_04330 PF00528 Binding-protein-dependent transport system inner membrane component JX580_04335 PF00005 ABC transporter JX580_04340 PF01895 PhoU domain JX580_04345 PF00072 Response regulator receiver domain JX580_04345 PF00486 Transcriptional regulatory protein, C terminal JX580_04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_04350 PF00512 His Kinase A (phospho-acceptor) domain JX580_04350 PF00989 PAS fold JX580_04350 PF11808 Phosphate regulon sensor protein PhoR JX580_04355 PF12849 PBP superfamily domain JX580_04360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JX580_04360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JX580_04375 PF13609 Gram-negative porin JX580_04385 PF00149 Calcineurin-like phosphoesterase JX580_04385 PF02872 5'-nucleotidase, C-terminal domain JX580_04390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_04390 PF00672 HAMP domain JX580_04390 PF02203 Tar ligand binding domain homologue JX580_04395 PF00563 EAL domain JX580_04395 PF01590 GAF domain JX580_04395 PF00990 Diguanylate cyclase, GGDEF domain JX580_04395 PF00360 Phytochrome region JX580_04400 PF00343 Carbohydrate phosphorylase JX580_04405 PF01797 Transposase IS200 like JX580_04410 PF07282 Putative transposase DNA-binding domain JX580_04410 PF12323 Helix-turn-helix domain JX580_04410 PF01385 Probable transposase JX580_04415 PF00343 Carbohydrate phosphorylase JX580_04420 PF02887 Pyruvate kinase, alpha/beta domain JX580_04420 PF00224 Pyruvate kinase, barrel domain JX580_04430 PF13439 Glycosyltransferase Family 4 JX580_04430 PF00534 Glycosyl transferases group 1 JX580_04440 PF01797 Transposase IS200 like JX580_04445 PF07282 Putative transposase DNA-binding domain JX580_04445 PF01385 Probable transposase JX580_04445 PF12323 Helix-turn-helix domain JX580_04455 PF00589 Phage integrase family JX580_04455 PF13356 Arm DNA-binding domain JX580_04510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_04510 PF08447 PAS fold JX580_04510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_04510 PF08447 PAS fold JX580_04515 PF01584 CheW-like domain JX580_04515 PF00072 Response regulator receiver domain JX580_04520 PF00672 HAMP domain JX580_04520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_04520 PF00512 His Kinase A (phospho-acceptor) domain JX580_04520 PF01627 Hpt domain JX580_04520 PF00072 Response regulator receiver domain JX580_04520 PF17149 Periplasmic sensor domain found in signal transduction proteins JX580_04525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_04525 PF00512 His Kinase A (phospho-acceptor) domain JX580_04525 PF00989 PAS fold JX580_04525 PF00072 Response regulator receiver domain JX580_04525 PF00497 Bacterial extracellular solute-binding proteins, family 3 JX580_04525 PF01627 Hpt domain JX580_04530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_04530 PF00072 Response regulator receiver domain JX580_04530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_04530 PF00672 HAMP domain JX580_04530 PF00512 His Kinase A (phospho-acceptor) domain JX580_04530 PF01627 Hpt domain JX580_04535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_04535 PF00072 Response regulator receiver domain JX580_04535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_04535 PF01627 Hpt domain JX580_04535 PF00672 HAMP domain JX580_04535 PF00512 His Kinase A (phospho-acceptor) domain JX580_04545 PF00990 Diguanylate cyclase, GGDEF domain JX580_04545 PF00072 Response regulator receiver domain JX580_04550 PF00990 Diguanylate cyclase, GGDEF domain JX580_04550 PF00563 EAL domain JX580_04550 PF08447 PAS fold JX580_04550 PF08448 PAS fold JX580_04555 PF08447 PAS fold JX580_04555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_04585 PF01850 PIN domain JX580_04625 PF01894 Uncharacterised protein family UPF0047 JX580_04635 PF05099 Tellurite resistance protein TerB JX580_04635 PF00226 DnaJ domain JX580_04645 PF00133 tRNA synthetases class I (I, L, M and V) JX580_04645 PF13603 Leucyl-tRNA synthetase, Domain 2 JX580_04645 PF08264 Anticodon-binding domain of tRNA JX580_04660 PF00171 Aldehyde dehydrogenase family JX580_04680 PF01812 5-formyltetrahydrofolate cyclo-ligase family JX580_04695 PF00444 Ribosomal protein L36 JX580_04700 PF13419 Haloacid dehalogenase-like hydrolase JX580_04710 PF00114 Pilin (bacterial filament) JX580_04710 PF07963 Prokaryotic N-terminal methylation motif JX580_04720 PF00072 Response regulator receiver domain JX580_04720 PF02954 Bacterial regulatory protein, Fis family JX580_04720 PF00158 Sigma-54 interaction domain JX580_04725 PF02562 PhoH-like protein JX580_04725 PF13638 PIN domain JX580_04730 PF00578 AhpC/TSA family JX580_04735 PF00701 Dihydrodipicolinate synthetase family JX580_04745 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JX580_04745 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JX580_04745 PF02769 AIR synthase related protein, C-terminal domain JX580_04755 PF09285 Elongation factor P, C-terminal JX580_04755 PF08207 Elongation factor P (EF-P) KOW-like domain JX580_04755 PF01132 Elongation factor P (EF-P) OB domain JX580_04765 PF09186 Domain of unknown function (DUF1949) JX580_04765 PF01205 Uncharacterized protein family UPF0029 JX580_04770 PF00575 S1 RNA binding domain JX580_04770 PF16921 Tex protein YqgF-like domain JX580_04770 PF09371 Tex-like protein N-terminal domain JX580_04770 PF17674 HHH domain JX580_04775 PF02683 Cytochrome C biogenesis protein transmembrane region JX580_04775 PF11412 Disulphide bond corrector protein DsbC JX580_04780 PF04186 FxsA cytoplasmic membrane protein JX580_04790 PF13847 Methyltransferase domain JX580_04790 PF10119 Predicted methyltransferase regulatory domain JX580_04795 PF03773 Predicted permease JX580_04805 PF12804 MobA-like NTP transferase domain JX580_04810 PF00994 Probable molybdopterin binding domain JX580_04810 PF03454 MoeA C-terminal region (domain IV) JX580_04810 PF03453 MoeA N-terminal region (domain I and II) JX580_04815 PF00072 Response regulator receiver domain JX580_04815 PF00196 Bacterial regulatory proteins, luxR family JX580_04820 PF00206 Lyase JX580_04820 PF10415 Fumarase C C-terminus JX580_04825 PF00085 Thioredoxin JX580_04835 PF13307 Helicase C-terminal domain JX580_04835 PF06733 DEAD_2 JX580_04840 PF00117 Glutamine amidotransferase class-I JX580_04840 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JX580_04845 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JX580_04845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JX580_04845 PF02142 MGS-like domain JX580_04850 PF01272 Transcription elongation factor, GreA/GreB, C-term JX580_04850 PF03449 Transcription elongation factor, N-terminal JX580_04860 PF01571 Aminomethyltransferase folate-binding domain JX580_04865 PF00890 FAD binding domain JX580_04865 PF02910 Fumarate reductase flavoprotein C-term JX580_04875 PF17820 PDZ domain JX580_04875 PF13180 PDZ domain JX580_04880 PF00679 Elongation factor G C-terminus JX580_04880 PF00009 Elongation factor Tu GTP binding domain JX580_04880 PF03144 Elongation factor Tu domain 2 JX580_04880 PF06421 GTP-binding protein LepA C-terminus JX580_04885 PF10502 Signal peptidase, peptidase S26 JX580_04890 PF14622 Ribonuclease-III-like JX580_04890 PF00035 Double-stranded RNA binding motif JX580_04895 PF07650 KH domain JX580_04895 PF01926 50S ribosome-binding GTPase JX580_04900 PF11967 Recombination protein O N terminal JX580_04900 PF02565 Recombination protein O C terminal JX580_04905 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JX580_04910 PF01648 4'-phosphopantetheinyl transferase superfamily JX580_04920 PF08448 PAS fold JX580_04920 PF08447 PAS fold JX580_04920 PF00990 Diguanylate cyclase, GGDEF domain JX580_04920 PF00563 EAL domain JX580_04925 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_04930 PF01580 FtsK/SpoIIIE family JX580_04930 PF09397 Ftsk gamma domain JX580_04930 PF17854 FtsK alpha domain JX580_04930 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JX580_04935 PF03548 Outer membrane lipoprotein carrier protein LolA JX580_04940 PF16193 AAA C-terminal domain JX580_04940 PF00004 ATPase family associated with various cellular activities (AAA) JX580_04940 PF12002 MgsA AAA+ ATPase C terminal JX580_04945 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JX580_04950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JX580_04950 PF02403 Seryl-tRNA synthetase N-terminal domain JX580_04960 PF00589 Phage integrase family JX580_04960 PF13356 Arm DNA-binding domain JX580_04970 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JX580_04975 PF05973 Phage derived protein Gp49-like (DUF891) JX580_05015 PF00953 Glycosyl transferase family 4 JX580_05045 PF10531 SLBB domain JX580_05045 PF02563 Polysaccharide biosynthesis/export protein JX580_05050 PF01061 ABC-2 type transporter JX580_05055 PF00005 ABC transporter JX580_05065 PF00483 Nucleotidyl transferase JX580_05070 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JX580_05075 PF04321 RmlD substrate binding domain JX580_05080 PF16363 GDP-mannose 4,6 dehydratase JX580_05110 PF00535 Glycosyl transferase family 2 JX580_05175 PF00398 Ribosomal RNA adenine dimethylase JX580_05180 PF13276 HTH-like domain JX580_05180 PF00665 Integrase core domain JX580_05180 PF13333 Integrase core domain JX580_05205 PF00535 Glycosyl transferase family 2 JX580_05210 PF01507 Phosphoadenosine phosphosulfate reductase family JX580_05215 PF00009 Elongation factor Tu GTP binding domain JX580_05220 PF02080 TrkA-C domain JX580_05220 PF03600 Citrate transporter JX580_05230 PF00459 Inositol monophosphatase family JX580_05240 PF08011 PD-(D/E)XK nuclease superfamily JX580_05240 PF09820 Predicted AAA-ATPase JX580_05250 PF13333 Integrase core domain JX580_05250 PF00665 Integrase core domain JX580_05250 PF13276 HTH-like domain JX580_05265 PF00543 Nitrogen regulatory protein P-II JX580_05270 PF02666 Phosphatidylserine decarboxylase JX580_05275 PF00764 Arginosuccinate synthase JX580_05280 PF04608 Phosphatidylglycerophosphatase A JX580_05285 PF00581 Rhodanese-like domain JX580_05290 PF00375 Sodium:dicarboxylate symporter family JX580_05295 PF08011 PD-(D/E)XK nuclease superfamily JX580_05295 PF09820 Predicted AAA-ATPase JX580_05300 PF00149 Calcineurin-like phosphoesterase JX580_05305 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JX580_05310 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JX580_05315 PF00749 tRNA synthetases class I (E and Q), catalytic domain JX580_05315 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JX580_05320 PF01406 tRNA synthetases class I (C) catalytic domain JX580_05320 PF09190 DALR domain JX580_05325 PF01464 Transglycosylase SLT domain JX580_05330 PF01476 LysM domain JX580_05330 PF01464 Transglycosylase SLT domain JX580_05335 PF16123 Hydroxyacylglutathione hydrolase C-terminus JX580_05335 PF00753 Metallo-beta-lactamase superfamily JX580_05345 PF00075 RNase H JX580_05350 PF01476 LysM domain JX580_05350 PF01551 Peptidase family M23 JX580_05355 PF03960 ArsC family JX580_05365 PF13742 OB-fold nucleic acid binding domain JX580_05365 PF02601 Exonuclease VII, large subunit JX580_05370 PF01207 Dihydrouridine synthase (Dus) JX580_05375 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JX580_05380 PF16363 GDP-mannose 4,6 dehydratase JX580_05385 PF00672 HAMP domain JX580_05385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_05385 PF17200 Single Cache domain 2 JX580_05390 PF00749 tRNA synthetases class I (E and Q), catalytic domain JX580_05400 PF00924 Mechanosensitive ion channel JX580_05400 PF05552 Conserved TM helix JX580_05405 PF00005 ABC transporter JX580_05415 PF00528 Binding-protein-dependent transport system inner membrane component JX580_05425 PF01590 GAF domain JX580_05425 PF00158 Sigma-54 interaction domain JX580_05425 PF02954 Bacterial regulatory protein, Fis family JX580_05430 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JX580_05435 PF01850 PIN domain JX580_05445 PF07927 HicA toxin of bacterial toxin-antitoxin, JX580_05450 PF01381 Helix-turn-helix JX580_05450 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system JX580_05455 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_05455 PF18113 Rubredoxin binding C-terminal domain JX580_05470 PF02560 Cyanate lyase C-terminal domain JX580_05485 PF01220 Dehydroquinase class II JX580_05490 PF00364 Biotin-requiring enzyme JX580_05495 PF02785 Biotin carboxylase C-terminal domain JX580_05495 PF00289 Biotin carboxylase, N-terminal domain JX580_05495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JX580_05505 PF01207 Dihydrouridine synthase (Dus) JX580_05510 PF02954 Bacterial regulatory protein, Fis family JX580_05515 PF01808 AICARFT/IMPCHase bienzyme JX580_05515 PF02142 MGS-like domain JX580_05520 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JX580_05520 PF02843 Phosphoribosylglycinamide synthetase, C domain JX580_05520 PF02844 Phosphoribosylglycinamide synthetase, N domain JX580_05530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JX580_05535 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JX580_05535 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JX580_05540 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JX580_05540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JX580_05575 PF01928 CYTH domain JX580_05585 PF00291 Pyridoxal-phosphate dependent enzyme JX580_05590 PF05698 Bacterial trigger factor protein (TF) C-terminus JX580_05595 PF13847 Methyltransferase domain JX580_05600 PF13291 ACT domain JX580_05600 PF04607 Region found in RelA / SpoT proteins JX580_05600 PF02824 TGS domain JX580_05610 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JX580_05610 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JX580_05640 PF13333 Integrase core domain JX580_05640 PF00665 Integrase core domain JX580_05640 PF13276 HTH-like domain JX580_05650 PF08011 PD-(D/E)XK nuclease superfamily JX580_05650 PF09820 Predicted AAA-ATPase JX580_05670 PF05159 Capsule polysaccharide biosynthesis protein JX580_05680 PF13333 Integrase core domain JX580_05680 PF00665 Integrase core domain JX580_05680 PF13276 HTH-like domain JX580_05705 PF02397 Bacterial sugar transferase JX580_05710 PF06250 YhcG PDDEXK nuclease domain JX580_05710 PF17761 DUF1016 N-terminal domain JX580_05715 PF02397 Bacterial sugar transferase JX580_05740 PF00753 Metallo-beta-lactamase superfamily JX580_05740 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JX580_05740 PF10996 Beta-Casp domain JX580_05745 PF13477 Glycosyl transferase 4-like JX580_05745 PF00534 Glycosyl transferases group 1 JX580_05750 PF01370 NAD dependent epimerase/dehydratase family JX580_05775 PF04321 RmlD substrate binding domain JX580_05780 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JX580_05785 PF01370 NAD dependent epimerase/dehydratase family JX580_05795 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JX580_05795 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JX580_05795 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JX580_05800 PF01380 SIS domain JX580_05810 PF00665 Integrase core domain JX580_05810 PF13276 HTH-like domain JX580_05810 PF13333 Integrase core domain JX580_05830 PF04977 Septum formation initiator JX580_05835 PF00113 Enolase, C-terminal TIM barrel domain JX580_05835 PF03952 Enolase, N-terminal domain JX580_05840 PF00793 DAHP synthetase I family JX580_05845 PF00117 Glutamine amidotransferase class-I JX580_05845 PF06418 CTP synthase N-terminus JX580_05850 PF11734 TilS substrate C-terminal domain JX580_05850 PF01171 PP-loop family JX580_05855 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JX580_05865 PF18381 YcaO cyclodehydratase C-terminal domain JX580_05865 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JX580_05875 PF02810 SEC-C motif JX580_05880 PF01554 MatE JX580_05890 PF00293 NUDIX domain JX580_05895 PF00842 Alanine racemase, C-terminal domain JX580_05895 PF01168 Alanine racemase, N-terminal domain JX580_05900 PF00772 DnaB-like helicase N terminal domain JX580_05900 PF03796 DnaB-like helicase C terminal domain JX580_05915 PF00849 RNA pseudouridylate synthase JX580_05915 PF01479 S4 domain JX580_05920 PF04079 Segregation and condensation complex subunit ScpB JX580_05925 PF02616 Segregation and condensation protein ScpA JX580_05930 PF02163 Peptidase family M50 JX580_05935 PF01300 Telomere recombination JX580_05940 PF13654 AAA domain JX580_05940 PF05362 Lon protease (S16) C-terminal proteolytic domain JX580_05945 PF00291 Pyridoxal-phosphate dependent enzyme JX580_05955 PF00270 DEAD/DEAH box helicase JX580_05955 PF11898 Domain of unknown function (DUF3418) JX580_05955 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JX580_05955 PF00271 Helicase conserved C-terminal domain JX580_05955 PF04408 Helicase associated domain (HA2) JX580_05980 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JX580_05985 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JX580_06005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JX580_06010 PF00929 Exonuclease JX580_06020 PF04552 Sigma-54, DNA binding domain JX580_06020 PF04963 Sigma-54 factor, core binding domain JX580_06020 PF00309 Sigma-54 factor, Activator interacting domain (AID) JX580_06030 PF00072 Response regulator receiver domain JX580_06030 PF00486 Transcriptional regulatory protein, C terminal JX580_06055 PF00582 Universal stress protein family JX580_06060 PF00814 Glycoprotease family JX580_06070 PF00919 Uncharacterized protein family UPF0004 JX580_06070 PF18693 TRAM domain JX580_06070 PF04055 Radical SAM superfamily JX580_06075 PF02646 RmuC family JX580_06085 PF03653 Uncharacterised protein family (UPF0093) JX580_06090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JX580_06095 PF01926 50S ribosome-binding GTPase JX580_06105 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JX580_06110 PF03692 Putative zinc- or iron-chelating domain JX580_06115 PF00849 RNA pseudouridylate synthase JX580_06120 PF08713 DNA alkylation repair enzyme JX580_06130 PF08534 Redoxin JX580_06135 PF00571 CBS domain JX580_06140 PF03746 LamB/YcsF family JX580_06145 PF02682 Carboxyltransferase domain, subdomain C and D JX580_06150 PF02626 Carboxyltransferase domain, subdomain A and B JX580_06160 PF02954 Bacterial regulatory protein, Fis family JX580_06160 PF00072 Response regulator receiver domain JX580_06160 PF00158 Sigma-54 interaction domain JX580_06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_06165 PF00512 His Kinase A (phospho-acceptor) domain JX580_06165 PF00989 PAS fold JX580_06175 PF07715 TonB-dependent Receptor Plug Domain JX580_06175 PF00593 TonB dependent receptor JX580_06180 PF01297 Zinc-uptake complex component A periplasmic JX580_06185 PF00005 ABC transporter JX580_06190 PF00950 ABC 3 transport family JX580_06195 PF00950 ABC 3 transport family JX580_06200 PF00990 Diguanylate cyclase, GGDEF domain JX580_06200 PF05230 MASE2 domain JX580_06205 PF00152 tRNA synthetases class II (D, K and N) JX580_06205 PF01336 OB-fold nucleic acid binding domain JX580_06225 PF01740 STAS domain JX580_06225 PF00916 Sulfate permease family JX580_06240 PF17768 RecJ OB domain JX580_06240 PF02272 DHHA1 domain JX580_06240 PF01368 DHH family JX580_06245 PF00291 Pyridoxal-phosphate dependent enzyme JX580_06255 PF00571 CBS domain JX580_06255 PF01769 Divalent cation transporter JX580_06255 PF03448 MgtE intracellular N domain JX580_06260 PF01842 ACT domain JX580_06260 PF00742 Homoserine dehydrogenase JX580_06260 PF03447 Homoserine dehydrogenase, NAD binding domain JX580_06265 PF00155 Aminotransferase class I and II JX580_06270 PF04430 Protein of unknown function (DUF498/DUF598) JX580_06275 PF01551 Peptidase family M23 JX580_06275 PF01476 LysM domain JX580_06280 PF09335 SNARE associated Golgi protein JX580_06290 PF01975 Survival protein SurE JX580_06295 PF01713 Smr domain JX580_06305 PF06339 Ectoine synthase JX580_06310 PF00202 Aminotransferase class-III JX580_06315 PF00583 Acetyltransferase (GNAT) family JX580_06320 PF01488 Shikimate / quinate 5-dehydrogenase JX580_06320 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JX580_06320 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JX580_06325 PF03462 PCRF domain JX580_06325 PF00472 RF-1 domain JX580_06330 PF13847 Methyltransferase domain JX580_06330 PF17827 PrmC N-terminal domain JX580_06335 PF00899 ThiF family JX580_06350 PF06969 HemN C-terminal domain JX580_06350 PF04055 Radical SAM superfamily JX580_06355 PF00563 EAL domain JX580_06355 PF00990 Diguanylate cyclase, GGDEF domain JX580_06355 PF03707 Bacterial signalling protein N terminal repeat JX580_06360 PF04055 Radical SAM superfamily JX580_06360 PF08497 Radical SAM N-terminal JX580_06360 PF11842 Domain of unknown function (DUF3362) JX580_06365 PF03772 Competence protein JX580_06365 PF00753 Metallo-beta-lactamase superfamily JX580_06375 PF02811 PHP domain JX580_06380 PF04279 Intracellular septation protein A JX580_06385 PF03795 YCII-related domain JX580_06390 PF00717 Peptidase S24-like JX580_06390 PF01726 LexA DNA binding domain JX580_06395 PF00710 Asparaginase, N-terminal JX580_06395 PF17763 Glutaminase/Asparaginase C-terminal domain JX580_06405 PF04751 Protein of unknown function (DUF615) JX580_06410 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JX580_06410 PF12826 Helix-hairpin-helix motif JX580_06410 PF01653 NAD-dependent DNA ligase adenylation domain JX580_06410 PF03120 NAD-dependent DNA ligase OB-fold domain JX580_06410 PF00533 BRCA1 C Terminus (BRCT) domain JX580_06420 PF06470 SMC proteins Flexible Hinge Domain JX580_06420 PF02463 RecF/RecN/SMC N terminal domain JX580_06430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JX580_06440 PF05173 Dihydrodipicolinate reductase, C-terminus JX580_06440 PF01113 Dihydrodipicolinate reductase, N-terminus JX580_06445 PF00226 DnaJ domain JX580_06445 PF00684 DnaJ central domain JX580_06445 PF01556 DnaJ C terminal domain JX580_06450 PF00012 Hsp70 protein JX580_06455 PF01025 GrpE JX580_06460 PF08264 Anticodon-binding domain of tRNA JX580_06460 PF00133 tRNA synthetases class I (I, L, M and V) JX580_06460 PF10458 Valyl tRNA synthetase tRNA binding arm JX580_06475 PF10411 Disulfide bond isomerase protein N-terminus JX580_06475 PF13098 Thioredoxin-like domain JX580_06480 PF02899 Phage integrase, N-terminal SAM-like domain JX580_06480 PF00589 Phage integrase family JX580_06485 PF00873 AcrB/AcrD/AcrF family JX580_06490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JX580_06490 PF00529 HlyD membrane-fusion protein of T1SS JX580_06500 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JX580_06505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JX580_06505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX580_06505 PF11890 Domain of unknown function (DUF3410) JX580_06510 PF03625 Domain of unknown function DUF302 JX580_06550 PF01420 Type I restriction modification DNA specificity domain JX580_06555 PF12161 HsdM N-terminal domain JX580_06555 PF02384 N-6 DNA Methylase JX580_06560 PF00313 'Cold-shock' DNA-binding domain JX580_06565 PF00271 Helicase conserved C-terminal domain JX580_06565 PF08463 EcoEI R protein C-terminal JX580_06565 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JX580_06565 PF04851 Type III restriction enzyme, res subunit JX580_06585 PF01066 CDP-alcohol phosphatidyltransferase JX580_06590 PF00111 2Fe-2S iron-sulfur cluster binding domain JX580_06590 PF03473 MOSC domain JX580_06590 PF03476 MOSC N-terminal beta barrel domain JX580_06600 PF01541 GIY-YIG catalytic domain JX580_06600 PF12826 Helix-hairpin-helix motif JX580_06600 PF02151 UvrB/uvrC motif JX580_06600 PF08459 UvrC Helix-hairpin-helix N-terminal JX580_06605 PF06965 Na+/H+ antiporter 1 JX580_06605 PF01343 Peptidase family S49 JX580_06625 PF00749 tRNA synthetases class I (E and Q), catalytic domain JX580_06630 PF01258 Prokaryotic dksA/traR C4-type zinc finger JX580_06635 PF01351 Ribonuclease HII JX580_06640 PF02684 Lipid-A-disaccharide synthetase JX580_06645 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JX580_06645 PF00132 Bacterial transferase hexapeptide (six repeats) JX580_06650 PF07977 FabA-like domain JX580_06655 PF00132 Bacterial transferase hexapeptide (six repeats) JX580_06655 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JX580_06665 PF01103 Surface antigen JX580_06665 PF07244 Surface antigen variable number repeat JX580_06670 PF17820 PDZ domain JX580_06670 PF02163 Peptidase family M50 JX580_06680 PF01255 Putative undecaprenyl diphosphate synthase JX580_06685 PF01765 Ribosome recycling factor JX580_06690 PF00696 Amino acid kinase family JX580_06695 PF00889 Elongation factor TS JX580_06700 PF00318 Ribosomal protein S2 JX580_06705 PF00557 Metallopeptidase family M24 JX580_06710 PF08335 GlnD PII-uridylyltransferase JX580_06710 PF01966 HD domain JX580_06710 PF01909 Nucleotidyltransferase domain JX580_06720 PF14602 Hexapeptide repeat of succinyl-transferase JX580_06720 PF00132 Bacterial transferase hexapeptide (six repeats) JX580_06720 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JX580_06725 PF03960 ArsC family JX580_06730 PF07687 Peptidase dimerisation domain JX580_06730 PF01546 Peptidase family M20/M25/M40 JX580_06745 PF00209 Sodium:neurotransmitter symporter family JX580_06750 PF01565 FAD binding domain JX580_06750 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JX580_06755 PF00933 Glycosyl hydrolase family 3 N terminal domain JX580_06760 PF00528 Binding-protein-dependent transport system inner membrane component JX580_06760 PF12911 N-terminal TM domain of oligopeptide transport permease C JX580_06765 PF00528 Binding-protein-dependent transport system inner membrane component JX580_06770 PF17969 L,D-transpeptidase C-terminal domain JX580_06770 PF03734 L,D-transpeptidase catalytic domain JX580_06775 PF00795 Carbon-nitrogen hydrolase JX580_06775 PF02540 NAD synthase JX580_06780 PF02629 CoA binding domain JX580_06780 PF00549 CoA-ligase JX580_06785 PF08442 ATP-grasp domain JX580_06785 PF00549 CoA-ligase JX580_06805 PF04074 YhcH/YjgK/YiaL JX580_06810 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_06825 PF02348 Cytidylyltransferase JX580_06830 PF03966 Trm112p-like protein JX580_06835 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JX580_06840 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JX580_06855 PF00890 FAD binding domain JX580_06855 PF02910 Fumarate reductase flavoprotein C-term JX580_06860 PF13085 2Fe-2S iron-sulfur cluster binding domain JX580_06865 PF03992 Antibiotic biosynthesis monooxygenase JX580_06870 PF00072 Response regulator receiver domain JX580_06870 PF09308 LuxQ, periplasmic JX580_06870 PF00512 His Kinase A (phospho-acceptor) domain JX580_06870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_06880 PF03937 Flavinator of succinate dehydrogenase JX580_06885 PF01176 Translation initiation factor 1A / IF-1 JX580_06890 PF00330 Aconitase family (aconitate hydratase) JX580_06890 PF06434 Aconitate hydratase 2 N-terminus JX580_06890 PF11791 Aconitate B N-terminal domain JX580_06895 PF00206 Lyase JX580_06895 PF08328 Adenylosuccinate lyase C-terminal JX580_06900 PF08007 Cupin superfamily protein JX580_06925 PF00216 Bacterial DNA-binding protein JX580_06930 PF00004 ATPase family associated with various cellular activities (AAA) JX580_06930 PF05362 Lon protease (S16) C-terminal proteolytic domain JX580_06930 PF02190 ATP-dependent protease La (LON) substrate-binding domain JX580_06935 PF07724 AAA domain (Cdc48 subfamily) JX580_06935 PF10431 C-terminal, D2-small domain, of ClpB protein JX580_06935 PF06689 ClpX C4-type zinc finger JX580_06940 PF00574 Clp protease JX580_06945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JX580_06945 PF05698 Bacterial trigger factor protein (TF) C-terminus JX580_06945 PF05697 Bacterial trigger factor protein (TF) JX580_06955 PF00005 ABC transporter JX580_06955 PF12848 ABC transporter JX580_06960 PF00005 ABC transporter JX580_06965 PF02687 FtsX-like permease family JX580_06965 PF12704 MacB-like periplasmic core domain JX580_06970 PF03458 UPF0126 domain JX580_06975 PF00270 DEAD/DEAH box helicase JX580_06975 PF00271 Helicase conserved C-terminal domain JX580_06975 PF03461 TRCF domain JX580_06975 PF17757 UvrB interaction domain JX580_06975 PF02559 CarD-like/TRCF domain JX580_06985 PF03776 Septum formation topological specificity factor MinE JX580_06990 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JX580_06995 PF03775 Septum formation inhibitor MinC, C-terminal domain JX580_06995 PF05209 Septum formation inhibitor MinC, N-terminal domain JX580_07005 PF00258 Flavodoxin JX580_07010 PF01510 N-acetylmuramoyl-L-alanine amidase JX580_07015 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JX580_07015 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JX580_07020 PF00999 Sodium/hydrogen exchanger family JX580_07020 PF02080 TrkA-C domain JX580_07020 PF02254 TrkA-N domain JX580_07025 PF04102 SlyX JX580_07040 PF00043 Glutathione S-transferase, C-terminal domain JX580_07040 PF02798 Glutathione S-transferase, N-terminal domain JX580_07045 PF12838 4Fe-4S dicluster domain JX580_07050 PF01136 Peptidase family U32 JX580_07050 PF16325 Peptidase family U32 C-terminal domain JX580_07070 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_07070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JX580_07075 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JX580_07075 PF00364 Biotin-requiring enzyme JX580_07075 PF02817 e3 binding domain JX580_07080 PF17831 Pyruvate dehydrogenase E1 component middle domain JX580_07080 PF00456 Transketolase, thiamine diphosphate binding domain JX580_07085 PF00293 NUDIX domain JX580_07100 PF00480 ROK family JX580_07105 PF04305 Protein of unknown function (DUF455) JX580_07115 PF00474 Sodium:solute symporter family JX580_07125 PF06508 Queuosine biosynthesis protein QueC JX580_07135 PF00691 OmpA family JX580_07140 PF07676 WD40-like Beta Propeller Repeat JX580_07140 PF04052 TolB amino-terminal domain JX580_07150 PF02472 Biopolymer transport protein ExbD/TolR JX580_07155 PF01618 MotA/TolQ/ExbB proton channel family JX580_07160 PF17864 RuvB AAA lid domain JX580_07160 PF05491 RuvB C-terminal winged helix domain JX580_07160 PF05496 Holliday junction DNA helicase RuvB P-loop domain JX580_07165 PF07499 RuvA, C-terminal domain JX580_07165 PF01330 RuvA N terminal domain JX580_07170 PF02075 Crossover junction endodeoxyribonuclease RuvC JX580_07175 PF01709 Transcriptional regulator JX580_07180 PF02445 Quinolinate synthetase A protein JX580_07185 PF00152 tRNA synthetases class II (D, K and N) JX580_07185 PF01336 OB-fold nucleic acid binding domain JX580_07185 PF02938 GAD domain JX580_07195 PF00106 short chain dehydrogenase JX580_07200 PF00348 Polyprenyl synthetase JX580_07205 PF01242 6-pyruvoyl tetrahydropterin synthase JX580_07210 PF06750 Bacterial Peptidase A24 N-terminal domain JX580_07210 PF01478 Type IV leader peptidase family JX580_07220 PF00793 DAHP synthetase I family JX580_07225 PF03449 Transcription elongation factor, N-terminal JX580_07225 PF01272 Transcription elongation factor, GreA/GreB, C-term JX580_07230 PF00586 AIR synthase related protein, N-terminal domain JX580_07230 PF02769 AIR synthase related protein, C-terminal domain JX580_07235 PF01029 NusB family JX580_07240 PF00885 6,7-dimethyl-8-ribityllumazine synthase JX580_07245 PF00925 GTP cyclohydrolase II JX580_07245 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JX580_07250 PF00677 Lumazine binding domain JX580_07255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JX580_07255 PF01872 RibD C-terminal domain JX580_07260 PF03477 ATP cone domain JX580_07265 PF00464 Serine hydroxymethyltransferase JX580_07270 PF00005 ABC transporter JX580_07270 PF12848 ABC transporter JX580_07275 PF00990 Diguanylate cyclase, GGDEF domain JX580_07275 PF17158 Membrane-associated sensor, integral membrane domain JX580_07285 PF00591 Glycosyl transferase family, a/b domain JX580_07285 PF02885 Glycosyl transferase family, helical bundle domain JX580_07290 PF10414 Sirohaem synthase dimerisation region JX580_07290 PF14824 Sirohaem biosynthesis protein central JX580_07290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JX580_07295 PF01568 Molydopterin dinucleotide binding domain JX580_07295 PF04324 BFD-like [2Fe-2S] binding domain JX580_07295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JX580_07295 PF00384 Molybdopterin oxidoreductase JX580_07305 PF04324 BFD-like [2Fe-2S] binding domain JX580_07305 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JX580_07305 PF18267 Rubredoxin NAD+ reductase C-terminal domain JX580_07305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JX580_07305 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_07310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JX580_07310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JX580_07310 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_07310 PF18267 Rubredoxin NAD+ reductase C-terminal domain JX580_07310 PF04324 BFD-like [2Fe-2S] binding domain JX580_07315 PF00005 ABC transporter JX580_07320 PF00528 Binding-protein-dependent transport system inner membrane component JX580_07330 PF03861 ANTAR domain JX580_07330 PF08376 Nitrate and nitrite sensing JX580_07345 PF00459 Inositol monophosphatase family JX580_07355 PF13419 Haloacid dehalogenase-like hydrolase JX580_07360 PF00578 AhpC/TSA family JX580_07390 PF08245 Mur ligase middle domain JX580_07390 PF01225 Mur ligase family, catalytic domain JX580_07390 PF02875 Mur ligase family, glutamate ligase domain JX580_07415 PF00691 OmpA family JX580_07415 PF05736 OprF membrane domain JX580_07420 PF00664 ABC transporter transmembrane region JX580_07420 PF00005 ABC transporter JX580_07420 PF03412 Peptidase C39 family JX580_07425 PF00529 HlyD membrane-fusion protein of T1SS JX580_07425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JX580_07430 PF00196 Bacterial regulatory proteins, luxR family JX580_07430 PF00072 Response regulator receiver domain JX580_07450 PF01170 Putative RNA methylase family UPF0020 JX580_07450 PF10672 S-adenosylmethionine-dependent methyltransferase JX580_07450 PF02926 THUMP domain JX580_07470 PF00873 AcrB/AcrD/AcrF family JX580_07480 PF01252 Signal peptidase (SPase) II JX580_07485 PF08264 Anticodon-binding domain of tRNA JX580_07485 PF00133 tRNA synthetases class I (I, L, M and V) JX580_07485 PF06827 Zinc finger found in FPG and IleRS JX580_07490 PF06574 FAD synthetase JX580_07490 PF01687 Riboflavin kinase JX580_07495 PF12843 Putative quorum-sensing-regulated virulence factor JX580_07510 PF01131 DNA topoisomerase JX580_07510 PF01751 Toprim domain JX580_07510 PF01396 Topoisomerase DNA binding C4 zinc finger JX580_07535 PF03023 Lipid II flippase MurJ JX580_07540 PF02028 BCCT, betaine/carnitine/choline family transporter JX580_07545 PF00205 Thiamine pyrophosphate enzyme, central domain JX580_07545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX580_07545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX580_07555 PF01649 Ribosomal protein S20 JX580_07560 PF02590 Predicted SPOUT methyltransferase JX580_07570 PF01467 Cytidylyltransferase-like JX580_07575 PF02805 Metal binding domain of Ada JX580_07575 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JX580_07575 PF12833 Helix-turn-helix domain JX580_07575 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JX580_07585 PF02578 Multi-copper polyphenol oxidoreductase laccase JX580_07590 PF01479 S4 domain JX580_07590 PF00849 RNA pseudouridylate synthase JX580_07595 PF13525 Outer membrane lipoprotein JX580_07600 PF00909 Ammonium Transporter Family JX580_07600 PF00672 HAMP domain JX580_07605 PF01722 BolA-like protein JX580_07615 PF00111 2Fe-2S iron-sulfur cluster binding domain JX580_07620 PF00120 Glutamine synthetase, catalytic domain JX580_07620 PF03951 Glutamine synthetase, beta-Grasp domain JX580_07640 PF07715 TonB-dependent Receptor Plug Domain JX580_07640 PF00593 TonB dependent receptor JX580_07645 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JX580_07645 PF07685 CobB/CobQ-like glutamine amidotransferase domain JX580_07665 PF01381 Helix-turn-helix JX580_07675 PF01145 SPFH domain / Band 7 family JX580_07675 PF16200 C-terminal region of band_7 JX580_07690 PF07152 YaeQ protein JX580_07695 PF09905 DNA-binding protein VF530 JX580_07700 PF06167 Glucose-regulated metallo-peptidase M90 JX580_07710 PF12557 Cob(I)alamin adenosyltransferase N terminal JX580_07710 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JX580_07715 PF00155 Aminotransferase class I and II JX580_07720 PF03186 CobD/Cbib protein JX580_07725 PF01497 Periplasmic binding protein JX580_07730 PF02654 Cobalamin-5-phosphate synthase JX580_07740 PF00563 EAL domain JX580_07740 PF00990 Diguanylate cyclase, GGDEF domain JX580_07740 PF03707 Bacterial signalling protein N terminal repeat JX580_07745 PF02277 Phosphoribosyltransferase JX580_07750 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JX580_07760 PF00696 Amino acid kinase family JX580_07760 PF01842 ACT domain JX580_07760 PF13840 ACT domain JX580_07765 PF02272 DHHA1 domain JX580_07765 PF01411 tRNA synthetases class II (A) JX580_07765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JX580_07770 PF02631 RecX family JX580_07775 PF00154 recA bacterial DNA recombination protein JX580_07780 PF02464 Competence-damaged protein JX580_07785 PF00343 Carbohydrate phosphorylase JX580_07790 PF00534 Glycosyl transferases group 1 JX580_07790 PF08323 Starch synthase catalytic domain JX580_07795 PF00128 Alpha amylase, catalytic domain JX580_07795 PF02806 Alpha amylase, C-terminal all-beta domain JX580_07795 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JX580_07800 PF02446 4-alpha-glucanotransferase JX580_07810 PF00483 Nucleotidyl transferase JX580_07815 PF02685 Glucokinase JX580_07820 PF00571 CBS domain JX580_07820 PF01380 SIS domain JX580_07830 PF00483 Nucleotidyl transferase JX580_07835 PF01636 Phosphotransferase enzyme family JX580_07840 PF03968 OstA-like protein JX580_07840 PF04453 LPS transport system D JX580_07845 PF00639 PPIC-type PPIASE domain JX580_07845 PF09312 SurA N-terminal domain JX580_07845 PF00639 PPIC-type PPIASE domain JX580_07845 PF09312 SurA N-terminal domain JX580_07850 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JX580_07855 PF00398 Ribosomal RNA adenine dimethylase JX580_07860 PF00149 Calcineurin-like phosphoesterase JX580_07870 PF00795 Carbon-nitrogen hydrolase JX580_07875 PF00571 CBS domain JX580_07875 PF03471 Transporter associated domain JX580_07880 PF02130 Uncharacterized protein family UPF0054 JX580_07885 PF02562 PhoH-like protein JX580_07890 PF04055 Radical SAM superfamily JX580_07890 PF01938 TRAM domain JX580_07890 PF00919 Uncharacterized protein family UPF0004 JX580_07905 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding JX580_07905 PF10518 TAT (twin-arginine translocation) pathway signal sequence JX580_07905 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_07910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JX580_07920 PF01966 HD domain JX580_07920 PF13286 Phosphohydrolase-associated domain JX580_07925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JX580_07925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JX580_07930 PF00183 Hsp90 protein JX580_07940 PF02895 Signal transducing histidine kinase, homodimeric domain JX580_07940 PF01584 CheW-like domain JX580_07940 PF01627 Hpt domain JX580_07940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_07945 PF03975 CheD chemotactic sensory transduction JX580_07950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JX580_07955 PF00117 Glutamine amidotransferase class-I JX580_07955 PF00958 GMP synthase C terminal domain JX580_07955 PF02540 NAD synthase JX580_07960 PF00571 CBS domain JX580_07960 PF00478 IMP dehydrogenase / GMP reductase domain JX580_07975 PF00700 Bacterial flagellin C-terminal helical region JX580_07975 PF00669 Bacterial flagellin N-terminal helical region JX580_07980 PF01513 ATP-NAD kinase JX580_07985 PF02463 RecF/RecN/SMC N terminal domain JX580_07990 PF01475 Ferric uptake regulator family JX580_07995 PF04355 SmpA / OmlA family JX580_08000 PF03658 RnfH family Ubiquitin JX580_08005 PF03364 Polyketide cyclase / dehydrase and lipid transport JX580_08010 PF01668 SmpB protein JX580_08020 PF00717 Peptidase S24-like JX580_08025 PF11798 IMS family HHH motif JX580_08025 PF13438 Domain of unknown function (DUF4113) JX580_08025 PF00817 impB/mucB/samB family JX580_08025 PF11799 impB/mucB/samB family C-terminal domain JX580_08045 PF00875 DNA photolyase JX580_08045 PF03441 FAD binding domain of DNA photolyase JX580_08065 PF02652 L-lactate permease JX580_08070 PF00731 AIR carboxylase JX580_08075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JX580_08075 PF02222 ATP-grasp domain JX580_08080 PF00004 ATPase family associated with various cellular activities (AAA) JX580_08080 PF17871 AAA lid domain JX580_08080 PF10431 C-terminal, D2-small domain, of ClpB protein JX580_08080 PF02861 Clp amino terminal domain, pathogenicity island component JX580_08080 PF07724 AAA domain (Cdc48 subfamily) JX580_08085 PF02617 ATP-dependent Clp protease adaptor protein ClpS JX580_08090 PF00226 DnaJ domain JX580_08090 PF01556 DnaJ C terminal domain JX580_08095 PF00849 RNA pseudouridylate synthase JX580_08105 PF04356 Protein of unknown function (DUF489) JX580_08110 PF00072 Response regulator receiver domain JX580_08110 PF01627 Hpt domain JX580_08110 PF00512 His Kinase A (phospho-acceptor) domain JX580_08110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_08110 PF00672 HAMP domain JX580_08110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_08115 PF00563 EAL domain JX580_08115 PF00990 Diguanylate cyclase, GGDEF domain JX580_08115 PF03707 Bacterial signalling protein N terminal repeat JX580_08120 PF01584 CheW-like domain JX580_08120 PF00072 Response regulator receiver domain JX580_08125 PF00672 HAMP domain JX580_08125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_08125 PF02203 Tar ligand binding domain homologue JX580_08150 PF07963 Prokaryotic N-terminal methylation motif JX580_08150 PF08334 Type II secretion system (T2SS), protein G JX580_08160 PF04542 Sigma-70 region 2 JX580_08160 PF04539 Sigma-70 region 3 JX580_08160 PF04545 Sigma-70, region 4 JX580_08160 PF03979 Sigma-70 factor, region 1.1 JX580_08160 PF00140 Sigma-70 factor, region 1.2 JX580_08160 PF04546 Sigma-70, non-essential region JX580_08165 PF01807 CHC2 zinc finger JX580_08165 PF08275 DNA primase catalytic core, N-terminal domain JX580_08165 PF08278 DNA primase DnaG DnaB-binding JX580_08165 PF10410 DnaB-helicase binding domain of primase JX580_08175 PF01165 Ribosomal protein S21 JX580_08180 PF00814 Glycoprotease family JX580_08185 PF02660 Glycerol-3-phosphate acyltransferase JX580_08190 PF02152 Dihydroneopterin aldolase JX580_08200 PF02673 Bacitracin resistance protein BacA JX580_08210 PF01769 Divalent cation transporter JX580_08210 PF00571 CBS domain JX580_08210 PF03448 MgtE intracellular N domain JX580_08215 PF02308 MgtC family JX580_08220 PF00571 CBS domain JX580_08220 PF01769 Divalent cation transporter JX580_08220 PF03448 MgtE intracellular N domain JX580_08225 PF00709 Adenylosuccinate synthetase JX580_08230 PF13393 Histidyl-tRNA synthetase JX580_08240 PF01145 SPFH domain / Band 7 family JX580_08245 PF01145 SPFH domain / Band 7 family JX580_08245 PF12221 Bacterial membrane protein N terminal JX580_08250 PF16360 GTP-binding GTPase Middle Region JX580_08250 PF13167 GTP-binding GTPase N-terminal JX580_08250 PF01926 50S ribosome-binding GTPase JX580_08255 PF17209 Hfq protein JX580_08265 PF01119 DNA mismatch repair protein, C-terminal domain JX580_08265 PF08676 MutL C terminal dimerisation domain JX580_08270 PF01520 N-acetylmuramoyl-L-alanine amidase JX580_08270 PF11741 AMIN domain JX580_08275 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JX580_08280 PF08331 Domain of unknown function (DUF1730) JX580_08285 PF01584 CheW-like domain JX580_08290 PF01584 CheW-like domain JX580_08290 PF02895 Signal transducing histidine kinase, homodimeric domain JX580_08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_08290 PF01627 Hpt domain JX580_08290 PF00072 Response regulator receiver domain JX580_08295 PF04344 Chemotaxis phosphatase, CheZ JX580_08300 PF00072 Response regulator receiver domain JX580_08305 PF04542 Sigma-70 region 2 JX580_08305 PF04539 Sigma-70 region 3 JX580_08305 PF04545 Sigma-70, region 4 JX580_08310 PF10609 NUBPL iron-transfer P-loop NTPase JX580_08315 PF00448 SRP54-type protein, GTPase domain JX580_08320 PF00771 FHIPEP family JX580_08325 PF01312 FlhB HrpN YscU SpaS Family JX580_08330 PF01311 Bacterial export proteins, family 1 JX580_08335 PF01313 Bacterial export proteins, family 3 JX580_08340 PF00813 FliP family JX580_08345 PF04347 Flagellar biosynthesis protein, FliO JX580_08350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JX580_08355 PF02154 Flagellar motor switch protein FliM JX580_08355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JX580_08365 PF00672 HAMP domain JX580_08365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_08380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JX580_08380 PF18269 T3SS EscN ATPase C-terminal domain JX580_08390 PF01706 FliG C-terminal domain JX580_08390 PF14841 FliG middle domain JX580_08390 PF14842 FliG N-terminal domain JX580_08395 PF01514 Secretory protein of YscJ/FliF family JX580_08395 PF08345 Flagellar M-ring protein C-terminal JX580_08400 PF02049 Flagellar hook-basal body complex protein FliE JX580_08405 PF00158 Sigma-54 interaction domain JX580_08405 PF02954 Bacterial regulatory protein, Fis family JX580_08405 PF00072 Response regulator receiver domain JX580_08410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_08410 PF00512 His Kinase A (phospho-acceptor) domain JX580_08410 PF13188 PAS domain JX580_08435 PF11940 Domain of unknown function (DUF3458) Ig-like fold JX580_08435 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JX580_08435 PF01433 Peptidase family M1 domain JX580_08440 PF00691 OmpA family JX580_08445 PF00027 Cyclic nucleotide-binding domain JX580_08445 PF13545 Crp-like helix-turn-helix domain JX580_08450 PF02424 ApbE family JX580_08455 PF02622 Uncharacterized ACR, COG1678 JX580_08460 PF03652 Holliday junction resolvase JX580_08465 PF00156 Phosphoribosyl transferase domain JX580_08470 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JX580_08470 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JX580_08475 PF01979 Amidohydrolase family JX580_08490 PF03976 Polyphosphate kinase 2 (PPK2) JX580_08495 PF01168 Alanine racemase, N-terminal domain JX580_08510 PF12693 GspL periplasmic domain JX580_08510 PF05134 Type II secretion system (T2SS), protein L JX580_08515 PF03934 Type II secretion system (T2SS), protein K JX580_08520 PF11612 Type II secretion system (T2SS), protein J JX580_08520 PF07963 Prokaryotic N-terminal methylation motif JX580_08525 PF02501 Type II secretion system (T2SS), protein I JX580_08525 PF07963 Prokaryotic N-terminal methylation motif JX580_08535 PF08334 Type II secretion system (T2SS), protein G JX580_08535 PF07963 Prokaryotic N-terminal methylation motif JX580_08540 PF00482 Type II secretion system (T2SS), protein F JX580_08545 PF00437 Type II/IV secretion system protein JX580_08550 PF00263 Bacterial type II and III secretion system protein JX580_08550 PF03958 Bacterial type II/III secretion system short domain JX580_08565 PF04143 Sulphur transport JX580_08570 PF06039 Malate:quinone oxidoreductase (Mqo) JX580_08575 PF02492 CobW/HypB/UreG, nucleotide-binding domain JX580_08575 PF07683 Cobalamin synthesis protein cobW C-terminal domain JX580_08580 PF02649 Type I GTP cyclohydrolase folE2 JX580_08590 PF01809 Putative membrane protein insertion efficiency factor JX580_08600 PF03807 NADP oxidoreductase coenzyme F420-dependent JX580_08600 PF14748 Pyrroline-5-carboxylate reductase dimerisation JX580_08605 PF02325 YGGT family JX580_08610 PF00561 alpha/beta hydrolase fold JX580_08630 PF04002 RadC-like JAB domain JX580_08635 PF00830 Ribosomal L28 family JX580_08640 PF00471 Ribosomal protein L33 JX580_08645 PF01256 Carbohydrate kinase JX580_08645 PF03853 YjeF-related protein N-terminus JX580_08650 PF00072 Response regulator receiver domain JX580_08650 PF01627 Hpt domain JX580_08650 PF00512 His Kinase A (phospho-acceptor) domain JX580_08650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_08650 PF00672 HAMP domain JX580_08650 PF17149 Periplasmic sensor domain found in signal transduction proteins JX580_08660 PF00072 Response regulator receiver domain JX580_08665 PF10005 zinc-ribbon domain JX580_08665 PF15887 Putative zinc-binding metallo-peptidase JX580_08675 PF14403 Circularly permuted ATP-grasp type 2 JX580_08680 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JX580_08680 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JX580_08685 PF00294 pfkB family carbohydrate kinase JX580_08690 PF00588 SpoU rRNA Methylase family JX580_08690 PF08032 RNA 2'-O ribose methyltransferase substrate binding JX580_08695 PF00575 S1 RNA binding domain JX580_08695 PF00773 RNB domain JX580_08695 PF08461 Ribonuclease R winged-helix domain JX580_08695 PF17876 Cold shock domain JX580_08695 PF08206 Ribonuclease B OB domain JX580_08700 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_08700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JX580_08705 PF02568 Thiamine biosynthesis protein (ThiI) JX580_08705 PF02926 THUMP domain JX580_08710 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JX580_08715 PF00719 Inorganic pyrophosphatase JX580_08720 PF00311 Phosphoenolpyruvate carboxylase JX580_08725 PF02261 Aspartate decarboxylase JX580_08730 PF13677 Membrane MotB of proton-channel complex MotA/MotB JX580_08730 PF00691 OmpA family JX580_08735 PF01618 MotA/TolQ/ExbB proton channel family JX580_08740 PF02569 Pantoate-beta-alanine ligase JX580_08745 PF02548 Ketopantoate hydroxymethyltransferase JX580_08750 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JX580_08755 PF12626 Polymerase A arginine-rich C-terminus JX580_08755 PF12627 Probable RNA and SrmB- binding site of polymerase A JX580_08755 PF01743 Poly A polymerase head domain JX580_08760 PF02657 Fe-S metabolism associated domain JX580_08765 PF01435 Peptidase family M48 JX580_08770 PF02934 GatB/GatE catalytic domain JX580_08770 PF02637 GatB domain JX580_08775 PF01425 Amidase JX580_08780 PF02686 Glu-tRNAGln amidotransferase C subunit JX580_08790 PF04085 rod shape-determining protein MreC JX580_08800 PF00905 Penicillin binding protein transpeptidase domain JX580_08800 PF03717 Penicillin-binding Protein dimerisation domain JX580_08805 PF01098 Cell cycle protein JX580_08810 PF07943 Penicillin-binding protein 5, C-terminal domain JX580_08810 PF00768 D-alanyl-D-alanine carboxypeptidase JX580_08815 PF01063 Amino-transferase class IV JX580_08825 PF03099 Biotin/lipoate A/B protein ligase family JX580_08830 PF04055 Radical SAM superfamily JX580_08830 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JX580_08840 PF01430 Hsp33 protein JX580_08850 PF04940 Sensors of blue-light using FAD JX580_08850 PF00563 EAL domain JX580_08855 PF01339 CheB methylesterase JX580_08855 PF01739 CheR methyltransferase, SAM binding domain JX580_08855 PF03705 CheR methyltransferase, all-alpha domain JX580_08855 PF08448 PAS fold JX580_08860 PF00990 Diguanylate cyclase, GGDEF domain JX580_08860 PF00563 EAL domain JX580_08860 PF03707 Bacterial signalling protein N terminal repeat JX580_08865 PF03883 Peroxide stress protein YaaA JX580_08875 PF03193 RsgA GTPase JX580_08890 PF00034 Cytochrome c JX580_08895 PF00762 Ferrochelatase JX580_08910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_08910 PF00672 HAMP domain JX580_08910 PF02203 Tar ligand binding domain homologue JX580_08915 PF01979 Amidohydrolase family JX580_08920 PF00171 Aldehyde dehydrogenase family JX580_08925 PF17785 PUA-like domain JX580_08925 PF10672 S-adenosylmethionine-dependent methyltransferase JX580_08930 PF01597 Glycine cleavage H-protein JX580_08935 PF00990 Diguanylate cyclase, GGDEF domain JX580_08940 PF00563 EAL domain JX580_08940 PF00990 Diguanylate cyclase, GGDEF domain JX580_08940 PF03707 Bacterial signalling protein N terminal repeat JX580_08945 PF00873 AcrB/AcrD/AcrF family JX580_08950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JX580_08955 PF04851 Type III restriction enzyme, res subunit JX580_08955 PF08774 VRR-NUC domain JX580_08970 PF02661 Fic/DOC family JX580_08970 PF13784 Fic/DOC family N-terminal JX580_08985 PF01555 DNA methylase JX580_08985 PF18273 Type III R-M EcoP15I C-terminal domain JX580_09000 PF13784 Fic/DOC family N-terminal JX580_09000 PF02661 Fic/DOC family JX580_09015 PF01329 Pterin 4 alpha carbinolamine dehydratase JX580_09020 PF16491 CAAX prenyl protease N-terminal, five membrane helices JX580_09020 PF01435 Peptidase family M48 JX580_09025 PF00929 Exonuclease JX580_09030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX580_09030 PF00205 Thiamine pyrophosphate enzyme, central domain JX580_09030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX580_09035 PF10369 Small subunit of acetolactate synthase JX580_09040 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JX580_09040 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JX580_09050 PF02913 FAD linked oxidases, C-terminal domain JX580_09050 PF01565 FAD binding domain JX580_09055 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JX580_09055 PF01926 50S ribosome-binding GTPase JX580_09060 PF13360 PQQ-like domain JX580_09065 PF09976 Tetratricopeptide repeat-like domain JX580_09070 PF13393 Histidyl-tRNA synthetase JX580_09070 PF03129 Anticodon binding domain JX580_09080 PF04055 Radical SAM superfamily JX580_09085 PF00334 Nucleoside diphosphate kinase JX580_09090 PF01521 Iron-sulphur cluster biosynthesis JX580_09095 PF02082 Transcriptional regulator JX580_09100 PF00132 Bacterial transferase hexapeptide (six repeats) JX580_09105 PF00588 SpoU rRNA Methylase family JX580_09110 PF00459 Inositol monophosphatase family JX580_09115 PF00583 Acetyltransferase (GNAT) family JX580_09125 PF00682 HMGL-like JX580_09125 PF08502 LeuA allosteric (dimerisation) domain JX580_09130 PF01066 CDP-alcohol phosphatidyltransferase JX580_09135 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JX580_09135 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JX580_09135 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JX580_09140 PF00342 Phosphoglucose isomerase JX580_09145 PF00483 Nucleotidyl transferase JX580_09150 PF01206 Sulfurtransferase TusA JX580_09155 PF13181 Tetratricopeptide repeat JX580_09155 PF01435 Peptidase family M48 JX580_09185 PF00920 Dehydratase family JX580_09190 PF00696 Amino acid kinase family JX580_09190 PF00583 Acetyltransferase (GNAT) family JX580_09195 PF00929 Exonuclease JX580_09200 PF00462 Glutaredoxin JX580_09205 PF00733 Asparagine synthase JX580_09205 PF13537 Glutamine amidotransferase domain JX580_09220 PF03150 Di-haem cytochrome c peroxidase JX580_09225 PF16124 RecQ zinc-binding JX580_09225 PF00270 DEAD/DEAH box helicase JX580_09225 PF00271 Helicase conserved C-terminal domain JX580_09225 PF09382 RQC domain JX580_09225 PF00570 HRDC domain JX580_09230 PF00271 Helicase conserved C-terminal domain JX580_09230 PF00270 DEAD/DEAH box helicase JX580_09230 PF03880 DbpA RNA binding domain JX580_09250 PF05193 Peptidase M16 inactive domain JX580_09255 PF05193 Peptidase M16 inactive domain JX580_09255 PF00675 Insulinase (Peptidase family M16) JX580_09260 PF00448 SRP54-type protein, GTPase domain JX580_09260 PF02881 SRP54-type protein, helical bundle domain JX580_09270 PF00118 TCP-1/cpn60 chaperonin family JX580_09275 PF00166 Chaperonin 10 Kd subunit JX580_09285 PF00563 EAL domain JX580_09285 PF00990 Diguanylate cyclase, GGDEF domain JX580_09285 PF13426 PAS domain JX580_09290 PF02028 BCCT, betaine/carnitine/choline family transporter JX580_09310 PF07722 Peptidase C26 JX580_09315 PF00027 Cyclic nucleotide-binding domain JX580_09315 PF00520 Ion transport protein JX580_09320 PF00924 Mechanosensitive ion channel JX580_09320 PF12795 Mechanosensitive ion channel porin domain JX580_09320 PF12794 Mechanosensitive ion channel inner membrane domain 1 JX580_09335 PF07690 Major Facilitator Superfamily JX580_09340 PF01472 PUA domain JX580_09340 PF00696 Amino acid kinase family JX580_09345 PF01018 GTP1/OBG JX580_09345 PF01926 50S ribosome-binding GTPase JX580_09350 PF01016 Ribosomal L27 protein JX580_09355 PF00829 Ribosomal prokaryotic L21 protein JX580_09360 PF00348 Polyprenyl synthetase JX580_09370 PF00436 Single-strand binding protein family JX580_09375 PF07690 Major Facilitator Superfamily JX580_09385 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JX580_09395 PF00875 DNA photolyase JX580_09395 PF03441 FAD binding domain of DNA photolyase JX580_09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_09400 PF09308 LuxQ, periplasmic JX580_09400 PF00512 His Kinase A (phospho-acceptor) domain JX580_09400 PF00072 Response regulator receiver domain JX580_09415 PF01381 Helix-turn-helix JX580_09420 PF05973 Phage derived protein Gp49-like (DUF891) JX580_09440 PF02384 N-6 DNA Methylase JX580_09450 PF17755 UvrA DNA-binding domain JX580_09450 PF17760 UvrA interaction domain JX580_09465 PF00141 Peroxidase JX580_09480 PF01594 AI-2E family transporter JX580_09485 PF13657 HipA N-terminal domain JX580_09485 PF07804 HipA-like C-terminal domain JX580_09490 PF01381 Helix-turn-helix JX580_09495 PF03459 TOBE domain JX580_09495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX580_09505 PF00528 Binding-protein-dependent transport system inner membrane component JX580_09510 PF00005 ABC transporter JX580_09510 PF03459 TOBE domain JX580_09520 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JX580_09520 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JX580_09525 PF00005 ABC transporter JX580_09530 PF03459 TOBE domain JX580_09535 PF01032 FecCD transport family JX580_09540 PF00296 Luciferase-like monooxygenase JX580_09585 PF09722 Protein of unknown function (DUF2384) JX580_09600 PF00881 Nitroreductase family JX580_09605 PF00291 Pyridoxal-phosphate dependent enzyme JX580_09610 PF00990 Diguanylate cyclase, GGDEF domain JX580_09610 PF03707 Bacterial signalling protein N terminal repeat JX580_09610 PF00563 EAL domain JX580_09615 PF00300 Histidine phosphatase superfamily (branch 1) JX580_09630 PF13089 Polyphosphate kinase N-terminal domain JX580_09630 PF17941 Polyphosphate kinase C-terminal domain 1 JX580_09630 PF13090 Polyphosphate kinase C-terminal domain 2 JX580_09630 PF02503 Polyphosphate kinase middle domain JX580_09635 PF02541 Ppx/GppA phosphatase family JX580_09640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_09640 PF00672 HAMP domain JX580_09640 PF02203 Tar ligand binding domain homologue JX580_09655 PF00270 DEAD/DEAH box helicase JX580_09655 PF00271 Helicase conserved C-terminal domain JX580_09655 PF17764 3′ DNA-binding domain (3′BD) JX580_09655 PF18074 Primosomal protein N C-terminal domain JX580_09655 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JX580_09660 PF00563 EAL domain JX580_09660 PF00990 Diguanylate cyclase, GGDEF domain JX580_09660 PF03707 Bacterial signalling protein N terminal repeat JX580_09670 PF01717 Cobalamin-independent synthase, Catalytic domain JX580_09670 PF08267 Cobalamin-independent synthase, N-terminal domain JX580_09730 PF03466 LysR substrate binding domain JX580_09730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX580_09750 PF01872 RibD C-terminal domain JX580_09755 PF10137 Predicted nucleotide-binding protein containing TIR-like domain JX580_09775 PF00392 Bacterial regulatory proteins, gntR family JX580_09775 PF00155 Aminotransferase class I and II JX580_09800 PF01810 LysE type translocator JX580_09815 PF00578 AhpC/TSA family JX580_09815 PF10417 C-terminal domain of 1-Cys peroxiredoxin JX580_09840 PF01810 LysE type translocator JX580_09885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_09885 PF00072 Response regulator receiver domain JX580_09885 PF01627 Hpt domain JX580_09885 PF00512 His Kinase A (phospho-acceptor) domain JX580_09885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_09885 PF00672 HAMP domain JX580_09895 PF00578 AhpC/TSA family JX580_09900 PF08543 Phosphomethylpyrimidine kinase JX580_09905 PF17770 Ribonuclease J C-terminal domain JX580_09905 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JX580_09905 PF12706 Beta-lactamase superfamily domain JX580_09915 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JX580_09920 PF00176 SNF2 family N-terminal domain JX580_09920 PF12419 SNF2 Helicase protein JX580_09920 PF00271 Helicase conserved C-terminal domain JX580_09935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JX580_09935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JX580_09935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JX580_09935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JX580_09940 PF00692 dUTPase JX580_09955 PF04127 DNA / pantothenate metabolism flavoprotein JX580_09955 PF02441 Flavoprotein JX580_09975 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JX580_09975 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JX580_09990 PF00899 ThiF family JX580_09995 PF01026 TatD related DNase JX580_10000 PF01196 Ribosomal protein L17 JX580_10005 PF01000 RNA polymerase Rpb3/RpoA insert domain JX580_10005 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JX580_10005 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JX580_10010 PF00163 Ribosomal protein S4/S9 N-terminal domain JX580_10010 PF01479 S4 domain JX580_10015 PF00411 Ribosomal protein S11 JX580_10020 PF00416 Ribosomal protein S13/S18 JX580_10025 PF00344 SecY translocase JX580_10030 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JX580_10035 PF00327 Ribosomal protein L30p/L7e JX580_10040 PF03719 Ribosomal protein S5, C-terminal domain JX580_10040 PF00333 Ribosomal protein S5, N-terminal domain JX580_10045 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JX580_10050 PF00347 Ribosomal protein L6 JX580_10055 PF00410 Ribosomal protein S8 JX580_10060 PF00253 Ribosomal protein S14p/S29e JX580_10065 PF00281 Ribosomal protein L5 JX580_10065 PF00673 ribosomal L5P family C-terminus JX580_10070 PF00467 KOW motif JX580_10070 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JX580_10075 PF00238 Ribosomal protein L14p/L23e JX580_10080 PF00366 Ribosomal protein S17 JX580_10085 PF00831 Ribosomal L29 protein JX580_10090 PF00252 Ribosomal protein L16p/L10e JX580_10095 PF07650 KH domain JX580_10095 PF00189 Ribosomal protein S3, C-terminal domain JX580_10100 PF00237 Ribosomal protein L22p/L17e JX580_10105 PF00203 Ribosomal protein S19 JX580_10110 PF00181 Ribosomal Proteins L2, RNA binding domain JX580_10110 PF03947 Ribosomal Proteins L2, C-terminal domain JX580_10115 PF00276 Ribosomal protein L23 JX580_10120 PF00573 Ribosomal protein L4/L1 family JX580_10125 PF00297 Ribosomal protein L3 JX580_10130 PF00338 Ribosomal protein S10p/S20e JX580_10135 PF03143 Elongation factor Tu C-terminal domain JX580_10135 PF03144 Elongation factor Tu domain 2 JX580_10135 PF00009 Elongation factor Tu GTP binding domain JX580_10140 PF00679 Elongation factor G C-terminus JX580_10140 PF03764 Elongation factor G, domain IV JX580_10140 PF14492 Elongation Factor G, domain II JX580_10140 PF00009 Elongation factor Tu GTP binding domain JX580_10140 PF03144 Elongation factor Tu domain 2 JX580_10145 PF00177 Ribosomal protein S7p/S5e JX580_10150 PF00164 Ribosomal protein S12/S23 JX580_10155 PF00623 RNA polymerase Rpb1, domain 2 JX580_10155 PF04983 RNA polymerase Rpb1, domain 3 JX580_10155 PF05000 RNA polymerase Rpb1, domain 4 JX580_10155 PF04998 RNA polymerase Rpb1, domain 5 JX580_10155 PF04997 RNA polymerase Rpb1, domain 1 JX580_10160 PF04563 RNA polymerase beta subunit JX580_10160 PF04561 RNA polymerase Rpb2, domain 2 JX580_10160 PF10385 RNA polymerase beta subunit external 1 domain JX580_10160 PF00562 RNA polymerase Rpb2, domain 6 JX580_10160 PF04565 RNA polymerase Rpb2, domain 3 JX580_10160 PF04560 RNA polymerase Rpb2, domain 7 JX580_10165 PF00542 Ribosomal protein L7/L12 C-terminal domain JX580_10165 PF16320 Ribosomal protein L7/L12 dimerisation domain JX580_10170 PF00466 Ribosomal protein L10 JX580_10175 PF00687 Ribosomal protein L1p/L10e family JX580_10180 PF03946 Ribosomal protein L11, N-terminal domain JX580_10180 PF00298 Ribosomal protein L11, RNA binding domain JX580_10185 PF02357 Transcription termination factor nusG JX580_10185 PF00467 KOW motif JX580_10190 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JX580_10200 PF03144 Elongation factor Tu domain 2 JX580_10200 PF00009 Elongation factor Tu GTP binding domain JX580_10200 PF03143 Elongation factor Tu C-terminal domain JX580_10220 PF00202 Aminotransferase class-III JX580_10225 PF17284 Spermidine synthase tetramerisation domain JX580_10230 PF02675 S-adenosylmethionine decarboxylase JX580_10235 PF02566 OsmC-like protein JX580_10240 PF00218 Indole-3-glycerol phosphate synthase JX580_10245 PF00591 Glycosyl transferase family, a/b domain JX580_10245 PF02885 Glycosyl transferase family, helical bundle domain JX580_10250 PF00117 Glutamine amidotransferase class-I JX580_10255 PF04715 Anthranilate synthase component I, N terminal region JX580_10255 PF00425 chorismate binding enzyme JX580_10260 PF13419 Haloacid dehalogenase-like hydrolase JX580_10265 PF00834 Ribulose-phosphate 3 epimerase family JX580_10275 PF01259 SAICAR synthetase JX580_10305 PF01078 Magnesium chelatase, subunit ChlI JX580_10305 PF13335 Magnesium chelatase, subunit ChlI C-terminal JX580_10310 PF04380 Membrane fusogenic activity JX580_10315 PF00990 Diguanylate cyclase, GGDEF domain JX580_10325 PF03485 Arginyl tRNA synthetase N terminal domain JX580_10325 PF05746 DALR anticodon binding domain JX580_10325 PF00750 tRNA synthetases class I (R) JX580_10330 PF01751 Toprim domain JX580_10330 PF13368 Topoisomerase C-terminal repeat JX580_10330 PF01131 DNA topoisomerase JX580_10335 PF02481 DNA recombination-mediator protein A JX580_10335 PF17782 DprA winged helix domain JX580_10340 PF01327 Polypeptide deformylase JX580_10345 PF02911 Formyl transferase, C-terminal domain JX580_10345 PF00551 Formyl transferase JX580_10350 PF01189 16S rRNA methyltransferase RsmB/F JX580_10350 PF01029 NusB family JX580_10360 PF00672 HAMP domain JX580_10360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_10360 PF00512 His Kinase A (phospho-acceptor) domain JX580_10360 PF00989 PAS fold JX580_10365 PF02954 Bacterial regulatory protein, Fis family JX580_10365 PF00072 Response regulator receiver domain JX580_10365 PF00158 Sigma-54 interaction domain JX580_10370 PF02254 TrkA-N domain JX580_10370 PF02080 TrkA-C domain JX580_10375 PF02386 Cation transport protein JX580_10385 PF00403 Heavy-metal-associated domain JX580_10400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JX580_10400 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JX580_10415 PF00115 Cytochrome C and Quinol oxidase polypeptide I JX580_10420 PF00475 Imidazoleglycerol-phosphate dehydratase JX580_10425 PF00117 Glutamine amidotransferase class-I JX580_10430 PF00977 Histidine biosynthesis protein JX580_10435 PF00977 Histidine biosynthesis protein JX580_10440 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JX580_10445 PF01230 HIT domain JX580_10450 PF02416 mttA/Hcf106 family JX580_10455 PF02416 mttA/Hcf106 family JX580_10460 PF00902 Sec-independent protein translocase protein (TatC) JX580_10475 PF00140 Sigma-70 factor, region 1.2 JX580_10475 PF04545 Sigma-70, region 4 JX580_10475 PF04542 Sigma-70 region 2 JX580_10480 PF04247 Invasion gene expression up-regulator, SirB JX580_10485 PF08241 Methyltransferase domain JX580_10490 PF00561 alpha/beta hydrolase fold JX580_10495 PF00313 'Cold-shock' DNA-binding domain JX580_10505 PF00990 Diguanylate cyclase, GGDEF domain JX580_10510 PF00155 Aminotransferase class I and II JX580_10515 PF01761 3-dehydroquinate synthase JX580_10520 PF01202 Shikimate kinase JX580_10525 PF00625 Guanylate kinase JX580_10545 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_10545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JX580_10550 PF08534 Redoxin JX580_10550 PF00462 Glutaredoxin JX580_10565 PF18146 Damage-inducible protein CinA KH domain JX580_10565 PF02464 Competence-damaged protein JX580_10565 PF00994 Probable molybdopterin binding domain JX580_10570 PF00563 EAL domain JX580_10570 PF00990 Diguanylate cyclase, GGDEF domain JX580_10570 PF03707 Bacterial signalling protein N terminal repeat JX580_10580 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_10595 PF01266 FAD dependent oxidoreductase JX580_10595 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JX580_10605 PF08351 Domain of unknown function (DUF1726) JX580_10605 PF13718 GNAT acetyltransferase 2 JX580_10605 PF05127 Helicase JX580_10605 PF17176 tRNA-binding domain JX580_10610 PF01842 ACT domain JX580_10610 PF00551 Formyl transferase JX580_10615 PF03372 Endonuclease/Exonuclease/phosphatase family JX580_10620 PF00970 Oxidoreductase FAD-binding domain JX580_10620 PF00175 Oxidoreductase NAD-binding domain JX580_10635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JX580_10635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JX580_10635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JX580_10635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JX580_10640 PF03971 Monomeric isocitrate dehydrogenase JX580_10645 PF01590 GAF domain JX580_10645 PF00563 EAL domain JX580_10645 PF00990 Diguanylate cyclase, GGDEF domain JX580_10645 PF00360 Phytochrome region JX580_10650 PF00072 Response regulator receiver domain JX580_10650 PF01627 Hpt domain JX580_10650 PF00512 His Kinase A (phospho-acceptor) domain JX580_10650 PF17149 Periplasmic sensor domain found in signal transduction proteins JX580_10650 PF00672 HAMP domain JX580_10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_10655 PF01636 Phosphotransferase enzyme family JX580_10665 PF00174 Oxidoreductase molybdopterin binding domain JX580_10670 PF00490 Delta-aminolevulinic acid dehydratase JX580_10675 PF08501 Shikimate dehydrogenase substrate binding domain JX580_10675 PF01488 Shikimate / quinate 5-dehydrogenase JX580_10675 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JX580_10680 PF02390 Putative methyltransferase JX580_10690 PF00912 Transglycosylase JX580_10690 PF17092 Penicillin-binding protein OB-like domain JX580_10690 PF00905 Penicillin binding protein transpeptidase domain JX580_10695 PF05191 Adenylate kinase, active site lid JX580_10700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_10700 PF00672 HAMP domain JX580_10700 PF02203 Tar ligand binding domain homologue JX580_10710 PF00586 AIR synthase related protein, N-terminal domain JX580_10710 PF02769 AIR synthase related protein, C-terminal domain JX580_10715 PF00155 Aminotransferase class I and II JX580_10720 PF12867 DinB superfamily JX580_10720 PF03781 Sulfatase-modifying factor enzyme 1 JX580_10730 PF08447 PAS fold JX580_10730 PF00990 Diguanylate cyclase, GGDEF domain JX580_10730 PF00563 EAL domain JX580_10730 PF08448 PAS fold JX580_10745 PF03707 Bacterial signalling protein N terminal repeat JX580_10745 PF00990 Diguanylate cyclase, GGDEF domain JX580_10745 PF00563 EAL domain JX580_10755 PF09308 LuxQ, periplasmic JX580_10755 PF00072 Response regulator receiver domain JX580_10755 PF00512 His Kinase A (phospho-acceptor) domain JX580_10755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_10760 PF02664 S-Ribosylhomocysteinase (LuxS) JX580_10765 PF01048 Phosphorylase superfamily JX580_10770 PF02222 ATP-grasp domain JX580_10770 PF01370 NAD dependent epimerase/dehydratase family JX580_10790 PF01850 PIN domain JX580_10795 PF00476 DNA polymerase family A JX580_10795 PF01367 5'-3' exonuclease, C-terminal SAM fold JX580_10795 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JX580_10795 PF01612 3'-5' exonuclease JX580_10800 PF00486 Transcriptional regulatory protein, C terminal JX580_10800 PF00072 Response regulator receiver domain JX580_10805 PF00072 Response regulator receiver domain JX580_10805 PF00990 Diguanylate cyclase, GGDEF domain JX580_10815 PF01171 PP-loop family JX580_10820 PF04480 Protein of unknown function (DUF559) JX580_10825 PF01925 Sulfite exporter TauE/SafE JX580_10830 PF05958 tRNA (Uracil-5-)-methyltransferase JX580_10835 PF00672 HAMP domain JX580_10835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_10835 PF00512 His Kinase A (phospho-acceptor) domain JX580_10835 PF01627 Hpt domain JX580_10835 PF00072 Response regulator receiver domain JX580_10835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_10840 PF00072 Response regulator receiver domain JX580_10845 PF00072 Response regulator receiver domain JX580_10860 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JX580_10870 PF13667 ThiC-associated domain JX580_10870 PF01964 Radical SAM ThiC family JX580_10875 PF01266 FAD dependent oxidoreductase JX580_10885 PF05690 Thiazole biosynthesis protein ThiG JX580_10890 PF08534 Redoxin JX580_10895 PF01292 Prokaryotic cytochrome b561 JX580_10900 PF04264 YceI-like domain JX580_10905 PF01040 UbiA prenyltransferase family JX580_10915 PF12804 MobA-like NTP transferase domain JX580_10915 PF00132 Bacterial transferase hexapeptide (six repeats) JX580_10920 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JX580_10920 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JX580_10925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JX580_10925 PF02874 ATP synthase alpha/beta family, beta-barrel domain JX580_10930 PF00231 ATP synthase JX580_10935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JX580_10935 PF00306 ATP synthase alpha/beta chain, C terminal domain JX580_10935 PF02874 ATP synthase alpha/beta family, beta-barrel domain JX580_10940 PF00213 ATP synthase delta (OSCP) subunit JX580_10945 PF00430 ATP synthase B/B' CF(0) JX580_10950 PF00137 ATP synthase subunit C JX580_10955 PF00119 ATP synthase A chain JX580_10970 PF02195 ParB-like nuclease domain JX580_10970 PF17762 HTH domain found in ParB protein JX580_10975 PF13614 AAA domain JX580_10980 PF02527 rRNA small subunit methyltransferase G JX580_10985 PF01134 Glucose inhibited division protein A JX580_10985 PF13932 GidA associated domain JX580_11005 PF02203 Tar ligand binding domain homologue JX580_11005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_11005 PF00672 HAMP domain JX580_11010 PF14489 QueF-like protein JX580_11010 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JX580_11040 PF00593 TonB dependent receptor JX580_11040 PF07715 TonB-dependent Receptor Plug Domain JX580_11050 PF00210 Ferritin-like domain JX580_11055 PF00593 TonB dependent receptor JX580_11055 PF07715 TonB-dependent Receptor Plug Domain JX580_11055 PF07660 Secretin and TonB N terminus short domain JX580_11065 PF00563 EAL domain JX580_11065 PF00990 Diguanylate cyclase, GGDEF domain JX580_11065 PF03707 Bacterial signalling protein N terminal repeat JX580_11070 PF13847 Methyltransferase domain JX580_11080 PF01223 DNA/RNA non-specific endonuclease JX580_11085 PF00005 ABC transporter JX580_11090 PF01032 FecCD transport family JX580_11095 PF01497 Periplasmic binding protein JX580_11105 PF07715 TonB-dependent Receptor Plug Domain JX580_11105 PF00593 TonB dependent receptor JX580_11110 PF01243 Pyridoxamine 5'-phosphate oxidase JX580_11120 PF00158 Sigma-54 interaction domain JX580_11120 PF02954 Bacterial regulatory protein, Fis family JX580_11120 PF01590 GAF domain JX580_11125 PF00005 ABC transporter JX580_11130 PF00528 Binding-protein-dependent transport system inner membrane component JX580_11135 PF00005 ABC transporter JX580_11140 PF02560 Cyanate lyase C-terminal domain JX580_11155 PF00593 TonB dependent receptor JX580_11155 PF07715 TonB-dependent Receptor Plug Domain JX580_11170 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JX580_11170 PF01464 Transglycosylase SLT domain JX580_11175 PF00005 ABC transporter JX580_11175 PF12848 ABC transporter JX580_11180 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX580_11185 PF03358 NADPH-dependent FMN reductase JX580_11190 PF02678 Pirin JX580_11190 PF17954 Quercetinase C-terminal cupin domain JX580_11195 PF03466 LysR substrate binding domain JX580_11195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX580_11205 PF13649 Methyltransferase domain JX580_11210 PF08003 Protein of unknown function (DUF1698) JX580_11215 PF00072 Response regulator receiver domain JX580_11215 PF00486 Transcriptional regulatory protein, C terminal JX580_11225 PF07726 ATPase family associated with various cellular activities (AAA) JX580_11225 PF17863 AAA lid domain JX580_11230 PF01882 Protein of unknown function DUF58 JX580_11245 PF07584 Aerotolerance regulator N-terminal JX580_11245 PF13519 von Willebrand factor type A domain JX580_11255 PF02203 Tar ligand binding domain homologue JX580_11255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_11255 PF00672 HAMP domain JX580_11260 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JX580_11275 PF05275 Copper resistance protein B precursor (CopB) JX580_11280 PF00394 Multicopper oxidase JX580_11280 PF07731 Multicopper oxidase JX580_11280 PF07732 Multicopper oxidase JX580_11285 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JX580_11295 PF00072 Response regulator receiver domain JX580_11295 PF00486 Transcriptional regulatory protein, C terminal JX580_11310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_11310 PF00512 His Kinase A (phospho-acceptor) domain JX580_11310 PF00672 HAMP domain JX580_11320 PF00664 ABC transporter transmembrane region JX580_11320 PF00005 ABC transporter JX580_11320 PF03412 Peptidase C39 family JX580_11340 PF02082 Transcriptional regulator JX580_11355 PF13519 von Willebrand factor type A domain JX580_11355 PF07584 Aerotolerance regulator N-terminal JX580_11370 PF01882 Protein of unknown function DUF58 JX580_11375 PF17863 AAA lid domain JX580_11375 PF07726 ATPase family associated with various cellular activities (AAA) JX580_11390 PF00005 ABC transporter JX580_11395 PF03649 Uncharacterised protein family (UPF0014) JX580_11400 PF00990 Diguanylate cyclase, GGDEF domain JX580_11435 PF00581 Rhodanese-like domain JX580_11435 PF00753 Metallo-beta-lactamase superfamily JX580_11445 PF03881 Fructosamine kinase JX580_11455 PF00384 Molybdopterin oxidoreductase JX580_11455 PF01568 Molydopterin dinucleotide binding domain JX580_11455 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JX580_11460 PF13247 4Fe-4S dicluster domain JX580_11480 PF07995 Glucose / Sorbosone dehydrogenase JX580_11485 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JX580_11525 PF02463 RecF/RecN/SMC N terminal domain JX580_11535 PF01420 Type I restriction modification DNA specificity domain JX580_11540 PF12161 HsdM N-terminal domain JX580_11540 PF02384 N-6 DNA Methylase JX580_11545 PF00005 ABC transporter JX580_11545 PF02687 FtsX-like permease family JX580_11545 PF12704 MacB-like periplasmic core domain JX580_11550 PF08463 EcoEI R protein C-terminal JX580_11550 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JX580_11550 PF04851 Type III restriction enzyme, res subunit JX580_11550 PF00271 Helicase conserved C-terminal domain JX580_11565 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JX580_11570 PF04221 RelB antitoxin JX580_11575 PF07556 Protein of unknown function (DUF1538) JX580_11580 PF07556 Protein of unknown function (DUF1538) JX580_11595 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB JX580_11600 PF01381 Helix-turn-helix JX580_11620 PF01926 50S ribosome-binding GTPase JX580_11620 PF12631 MnmE helical domain JX580_11620 PF10396 GTP-binding protein TrmE N-terminus JX580_11625 PF04333 MlaA lipoprotein JX580_11630 PF03466 LysR substrate binding domain JX580_11630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX580_11635 PF00881 Nitroreductase family JX580_11640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX580_11640 PF00205 Thiamine pyrophosphate enzyme, central domain JX580_11640 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX580_11645 PF01323 DSBA-like thioredoxin domain JX580_11650 PF01578 Cytochrome C assembly protein JX580_11655 PF05140 ResB-like family JX580_11660 PF01926 50S ribosome-binding GTPase JX580_11665 PF01435 Peptidase family M48 JX580_11670 PF01218 Coproporphyrinogen III oxidase JX580_11675 PF01479 S4 domain JX580_11680 PF02954 Bacterial regulatory protein, Fis family JX580_11680 PF00072 Response regulator receiver domain JX580_11680 PF00158 Sigma-54 interaction domain JX580_11685 PF02743 Cache domain JX580_11685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_11685 PF00512 His Kinase A (phospho-acceptor) domain JX580_11690 PF00485 Phosphoribulokinase / Uridine kinase family JX580_11695 PF00204 DNA gyrase B JX580_11695 PF00986 DNA gyrase B subunit, carboxyl terminus JX580_11695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_11695 PF18053 DNA gyrase B subunit insert domain JX580_11695 PF01751 Toprim domain JX580_11720 PF01553 Acyltransferase JX580_11720 PF00501 AMP-binding enzyme JX580_11740 PF14698 Argininosuccinate lyase C-terminal JX580_11740 PF00206 Lyase JX580_11755 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JX580_11755 PF03900 Porphobilinogen deaminase, C-terminal domain JX580_11760 PF02602 Uroporphyrinogen-III synthase HemD JX580_11775 PF08448 PAS fold JX580_11775 PF01339 CheB methylesterase JX580_11775 PF01739 CheR methyltransferase, SAM binding domain JX580_11775 PF03705 CheR methyltransferase, all-alpha domain JX580_11780 PF00990 Diguanylate cyclase, GGDEF domain JX580_11780 PF03707 Bacterial signalling protein N terminal repeat JX580_11780 PF00563 EAL domain JX580_11790 PF02237 Biotin protein ligase C terminal domain JX580_11790 PF08279 HTH domain JX580_11790 PF03099 Biotin/lipoate A/B protein ligase family JX580_11795 PF03692 Putative zinc- or iron-chelating domain JX580_11800 PF01300 Telomere recombination JX580_11805 PF16916 Dimerisation domain of Zinc Transporter JX580_11805 PF01545 Cation efflux family JX580_11820 PF00005 ABC transporter JX580_11820 PF08402 TOBE domain JX580_11825 PF00512 His Kinase A (phospho-acceptor) domain JX580_11825 PF00672 HAMP domain JX580_11825 PF00072 Response regulator receiver domain JX580_11825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JX580_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX580_11825 PF01627 Hpt domain JX580_11830 PF00085 Thioredoxin JX580_11845 PF00156 Phosphoribosyl transferase domain JX580_11850 PF03707 Bacterial signalling protein N terminal repeat JX580_11850 PF00990 Diguanylate cyclase, GGDEF domain JX580_11850 PF00563 EAL domain JX580_11860 PF01432 Peptidase family M3 JX580_11865 PF08447 PAS fold JX580_11865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JX580_11870 PF01618 MotA/TolQ/ExbB proton channel family JX580_11875 PF13677 Membrane MotB of proton-channel complex MotA/MotB JX580_11875 PF00691 OmpA family JX580_11890 PF02463 RecF/RecN/SMC N terminal domain JX580_11895 PF00468 Ribosomal protein L34 JX580_11900 PF00825 Ribonuclease P JX580_11905 PF14849 YidC periplasmic domain JX580_11905 PF02096 60Kd inner membrane protein JX580_11910 PF01925 Sulfite exporter TauE/SafE