locus-tag class description AYJ59_00020 PF00085 Thioredoxin AYJ59_00040 PF00092 von Willebrand factor type A domain AYJ59_00050 PF01882 Protein of unknown function DUF58 AYJ59_00055 PF07726 ATPase family associated with various cellular activities (AAA) AYJ59_00055 PF17863 AAA lid domain AYJ59_00060 PF07690 Major Facilitator Superfamily AYJ59_00075 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_00075 PF00072 Response regulator receiver domain AYJ59_00085 PF01223 DNA/RNA non-specific endonuclease AYJ59_00090 PF01464 Transglycosylase SLT domain AYJ59_00090 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AYJ59_00100 PF13649 Methyltransferase domain AYJ59_00105 PF08003 Protein of unknown function (DUF1698) AYJ59_00115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_00115 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_00115 PF09308 LuxQ, periplasmic AYJ59_00115 PF00072 Response regulator receiver domain AYJ59_00120 PF17863 AAA lid domain AYJ59_00120 PF07726 ATPase family associated with various cellular activities (AAA) AYJ59_00125 PF01882 Protein of unknown function DUF58 AYJ59_00140 PF07584 Aerotolerance regulator N-terminal AYJ59_00140 PF13519 von Willebrand factor type A domain AYJ59_00150 PF00501 AMP-binding enzyme AYJ59_00150 PF01553 Acyltransferase AYJ59_00155 PF07690 Major Facilitator Superfamily AYJ59_00165 PF00884 Sulfatase AYJ59_00170 PF04055 Radical SAM superfamily AYJ59_00170 PF13186 Iron-sulfur cluster-binding domain AYJ59_00175 PF00672 HAMP domain AYJ59_00175 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_00175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_00180 PF02954 Bacterial regulatory protein, Fis family AYJ59_00180 PF00072 Response regulator receiver domain AYJ59_00180 PF00158 Sigma-54 interaction domain AYJ59_00200 PF11146 Protein of unknown function (DUF2905) AYJ59_00205 PF01432 Peptidase family M3 AYJ59_00210 PF01894 Uncharacterised protein family UPF0047 AYJ59_00225 PF02690 Na+/Pi-cotransporter AYJ59_00230 PF00361 Proton-conducting membrane transporter AYJ59_00230 PF13244 Domain of unknown function (DUF4040) AYJ59_00230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYJ59_00230 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AYJ59_00235 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYJ59_00240 PF00361 Proton-conducting membrane transporter AYJ59_00250 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AYJ59_00255 PF03334 Na+/H+ antiporter subunit AYJ59_00260 PF00873 AcrB/AcrD/AcrF family AYJ59_00265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_00265 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_00275 PF03466 LysR substrate binding domain AYJ59_00275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_00280 PF00881 Nitroreductase family AYJ59_00290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ59_00290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYJ59_00290 PF00205 Thiamine pyrophosphate enzyme, central domain AYJ59_00295 PF01323 DSBA-like thioredoxin domain AYJ59_00300 PF01578 Cytochrome C assembly protein AYJ59_00305 PF05140 ResB-like family AYJ59_00310 PF01926 50S ribosome-binding GTPase AYJ59_00325 PF00672 HAMP domain AYJ59_00325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_00325 PF02203 Tar ligand binding domain homologue AYJ59_00330 PF01367 5'-3' exonuclease, C-terminal SAM fold AYJ59_00330 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYJ59_00330 PF00476 DNA polymerase family A AYJ59_00330 PF01612 3'-5' exonuclease AYJ59_00335 PF01636 Phosphotransferase enzyme family AYJ59_00350 PF02560 Cyanate lyase C-terminal domain AYJ59_00365 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_00365 PF18113 Rubredoxin binding C-terminal domain AYJ59_00375 PF03193 RsgA GTPase AYJ59_00390 PF00158 Sigma-54 interaction domain AYJ59_00390 PF02954 Bacterial regulatory protein, Fis family AYJ59_00390 PF01590 GAF domain AYJ59_00400 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_00410 PF00005 ABC transporter AYJ59_00420 PF00939 Sodium:sulfate symporter transmembrane region AYJ59_00425 PF00672 HAMP domain AYJ59_00425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_00425 PF02203 Tar ligand binding domain homologue AYJ59_00430 PF00563 EAL domain AYJ59_00430 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_00430 PF03707 Bacterial signalling protein N terminal repeat AYJ59_00460 PF00753 Metallo-beta-lactamase superfamily AYJ59_00460 PF10996 Beta-Casp domain AYJ59_00460 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AYJ59_00465 PF01810 LysE type translocator AYJ59_00470 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_00470 PF08448 PAS fold AYJ59_00490 PF00005 ABC transporter AYJ59_00495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_00500 PF01300 Telomere recombination AYJ59_00505 PF01435 Peptidase family M48 AYJ59_00510 PF01218 Coproporphyrinogen III oxidase AYJ59_00515 PF01479 S4 domain AYJ59_00520 PF00550 Phosphopantetheine attachment site AYJ59_00525 PF13193 AMP-binding enzyme C-terminal domain AYJ59_00525 PF00501 AMP-binding enzyme AYJ59_00530 PF07977 FabA-like domain AYJ59_00550 PF04820 Tryptophan halogenase AYJ59_00555 PF00005 ABC transporter AYJ59_00565 PF05175 Methyltransferase small domain AYJ59_00570 PF01810 LysE type translocator AYJ59_00585 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYJ59_00585 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYJ59_00625 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ59_00625 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ59_00645 PF00485 Phosphoribulokinase / Uridine kinase family AYJ59_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_00650 PF01751 Toprim domain AYJ59_00650 PF18053 DNA gyrase B subunit insert domain AYJ59_00650 PF00986 DNA gyrase B subunit, carboxyl terminus AYJ59_00650 PF00204 DNA gyrase B AYJ59_00670 PF00873 AcrB/AcrD/AcrF family AYJ59_00695 PF00072 Response regulator receiver domain AYJ59_00695 PF00486 Transcriptional regulatory protein, C terminal AYJ59_00700 PF02463 RecF/RecN/SMC N terminal domain AYJ59_00705 PF02768 DNA polymerase III beta subunit, C-terminal domain AYJ59_00705 PF02767 DNA polymerase III beta subunit, central domain AYJ59_00705 PF00712 DNA polymerase III beta subunit, N-terminal domain AYJ59_00710 PF00308 Bacterial dnaA protein AYJ59_00710 PF08299 Bacterial dnaA protein helix-turn-helix AYJ59_00710 PF11638 DnaA N-terminal domain AYJ59_00720 PF01925 Sulfite exporter TauE/SafE AYJ59_00725 PF00825 Ribonuclease P AYJ59_00730 PF02096 60Kd inner membrane protein AYJ59_00730 PF14849 YidC periplasmic domain AYJ59_00740 PF01926 50S ribosome-binding GTPase AYJ59_00740 PF10396 GTP-binding protein TrmE N-terminus AYJ59_00740 PF12631 MnmE helical domain AYJ59_00750 PF01205 Uncharacterized protein family UPF0029 AYJ59_00750 PF09186 Domain of unknown function (DUF1949) AYJ59_00765 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AYJ59_00765 PF14489 QueF-like protein AYJ59_00770 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_00770 PF00563 EAL domain AYJ59_00770 PF03707 Bacterial signalling protein N terminal repeat AYJ59_00780 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_00790 PF00072 Response regulator receiver domain AYJ59_00790 PF00158 Sigma-54 interaction domain AYJ59_00805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_00805 PF03466 LysR substrate binding domain AYJ59_00810 PF01717 Cobalamin-independent synthase, Catalytic domain AYJ59_00810 PF08267 Cobalamin-independent synthase, N-terminal domain AYJ59_00825 PF12833 Helix-turn-helix domain AYJ59_00830 PF02627 Carboxymuconolactone decarboxylase family AYJ59_00840 PF01177 Asp/Glu/Hydantoin racemase AYJ59_00850 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_00855 PF01654 Cytochrome bd terminal oxidase subunit I AYJ59_00860 PF02322 Cytochrome bd terminal oxidase subunit II AYJ59_00870 PF00005 ABC transporter AYJ59_00875 PF13533 Biotin-lipoyl like AYJ59_00880 PF02321 Outer membrane efflux protein AYJ59_00890 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AYJ59_00895 PF00361 Proton-conducting membrane transporter AYJ59_00895 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYJ59_00900 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYJ59_00900 PF00072 Response regulator receiver domain AYJ59_00900 PF00989 PAS fold AYJ59_00900 PF01627 Hpt domain AYJ59_00900 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_00905 PF00072 Response regulator receiver domain AYJ59_00915 PF01134 Glucose inhibited division protein A AYJ59_00915 PF13932 GidA associated domain AYJ59_00920 PF02527 rRNA small subunit methyltransferase G AYJ59_00925 PF13614 AAA domain AYJ59_00930 PF17762 HTH domain found in ParB protein AYJ59_00930 PF02195 ParB-like nuclease domain AYJ59_00945 PF00119 ATP synthase A chain AYJ59_00950 PF00137 ATP synthase subunit C AYJ59_00955 PF00430 ATP synthase B/B' CF(0) AYJ59_00960 PF00213 ATP synthase delta (OSCP) subunit AYJ59_00965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ59_00965 PF00306 ATP synthase alpha/beta chain, C terminal domain AYJ59_00965 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYJ59_00970 PF00231 ATP synthase AYJ59_00975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ59_00975 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYJ59_00980 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AYJ59_00980 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYJ59_00985 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ59_00985 PF12804 MobA-like NTP transferase domain AYJ59_00995 PF01040 UbiA prenyltransferase family AYJ59_01025 PF08281 Sigma-70, region 4 AYJ59_01025 PF04542 Sigma-70 region 2 AYJ59_01035 PF04345 Chorismate lyase AYJ59_01040 PF00271 Helicase conserved C-terminal domain AYJ59_01040 PF00270 DEAD/DEAH box helicase AYJ59_01040 PF17191 RecG wedge domain AYJ59_01055 PF00005 ABC transporter AYJ59_01065 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ59_01075 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYJ59_01075 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ59_01085 PF00909 Ammonium Transporter Family AYJ59_01085 PF00672 HAMP domain AYJ59_01090 PF01042 Endoribonuclease L-PSP AYJ59_01095 PF01297 Zinc-uptake complex component A periplasmic AYJ59_01100 PF00005 ABC transporter AYJ59_01105 PF00950 ABC 3 transport family AYJ59_01110 PF00950 ABC 3 transport family AYJ59_01120 PF13291 ACT domain AYJ59_01120 PF02824 TGS domain AYJ59_01120 PF04607 Region found in RelA / SpoT proteins AYJ59_01125 PF01192 RNA polymerase Rpb6 AYJ59_01135 PF02348 Cytidylyltransferase AYJ59_01140 PF00465 Iron-containing alcohol dehydrogenase AYJ59_01145 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYJ59_01150 PF00625 Guanylate kinase AYJ59_01155 PF01202 Shikimate kinase AYJ59_01160 PF01761 3-dehydroquinate synthase AYJ59_01165 PF01263 Aldose 1-epimerase AYJ59_01170 PF04545 Sigma-70, region 4 AYJ59_01170 PF04542 Sigma-70 region 2 AYJ59_01170 PF00140 Sigma-70 factor, region 1.2 AYJ59_01180 PF01370 NAD dependent epimerase/dehydratase family AYJ59_01180 PF02222 ATP-grasp domain AYJ59_01185 PF00563 EAL domain AYJ59_01185 PF03707 Bacterial signalling protein N terminal repeat AYJ59_01185 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_01190 PF01048 Phosphorylase superfamily AYJ59_01195 PF02664 S-Ribosylhomocysteinase (LuxS) AYJ59_01205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AYJ59_01210 PF01740 STAS domain AYJ59_01210 PF13426 PAS domain AYJ59_01215 PF13411 MerR HTH family regulatory protein AYJ59_01220 PF00875 DNA photolyase AYJ59_01220 PF03441 FAD binding domain of DNA photolyase AYJ59_01245 PF01593 Flavin containing amine oxidoreductase AYJ59_01290 PF14659 Phage integrase, N-terminal SAM-like domain AYJ59_01290 PF00589 Phage integrase family AYJ59_01345 PF03466 LysR substrate binding domain AYJ59_01345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_01350 PF04143 Sulphur transport AYJ59_01360 PF01292 Prokaryotic cytochrome b561 AYJ59_01365 PF00374 Nickel-dependent hydrogenase AYJ59_01370 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYJ59_01370 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AYJ59_01375 PF01750 Hydrogenase maturation protease AYJ59_01380 PF01455 HupF/HypC family AYJ59_01385 PF07449 Hydrogenase-1 expression protein HyaE AYJ59_01390 PF04809 HupH hydrogenase expression protein, C-terminal conserved region AYJ59_01395 PF00301 Rubredoxin AYJ59_01410 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AYJ59_01415 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ59_01420 PF02954 Bacterial regulatory protein, Fis family AYJ59_01420 PF00072 Response regulator receiver domain AYJ59_01420 PF00158 Sigma-54 interaction domain AYJ59_01425 PF01455 HupF/HypC family AYJ59_01430 PF13580 SIS domain AYJ59_01435 PF01924 Hydrogenase formation hypA family AYJ59_01440 PF00586 AIR synthase related protein, N-terminal domain AYJ59_01440 PF02769 AIR synthase related protein, C-terminal domain AYJ59_01455 PF02657 Fe-S metabolism associated domain AYJ59_01460 PF00175 Oxidoreductase NAD-binding domain AYJ59_01460 PF00258 Flavodoxin AYJ59_01460 PF00667 FAD binding domain AYJ59_01465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYJ59_01465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYJ59_01475 PF01507 Phosphoadenosine phosphosulfate reductase family AYJ59_01480 PF00009 Elongation factor Tu GTP binding domain AYJ59_01485 PF02080 TrkA-C domain AYJ59_01485 PF03600 Citrate transporter AYJ59_01490 PF01507 Phosphoadenosine phosphosulfate reductase family AYJ59_01495 PF00374 Nickel-dependent hydrogenase AYJ59_01500 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AYJ59_01500 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYJ59_01505 PF02743 Cache domain AYJ59_01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_01505 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_01510 PF01300 Telomere recombination AYJ59_01510 PF07503 HypF finger AYJ59_01510 PF17788 HypF Kae1-like domain AYJ59_01510 PF00708 Acylphosphatase AYJ59_01535 PF14659 Phage integrase, N-terminal SAM-like domain AYJ59_01535 PF00589 Phage integrase family AYJ59_01540 PF00872 Transposase, Mutator family AYJ59_01545 PF07732 Multicopper oxidase AYJ59_01545 PF00394 Multicopper oxidase AYJ59_01545 PF07731 Multicopper oxidase AYJ59_01550 PF05275 Copper resistance protein B precursor (CopB) AYJ59_01560 PF07732 Multicopper oxidase AYJ59_01560 PF07731 Multicopper oxidase AYJ59_01575 PF00158 Sigma-54 interaction domain AYJ59_01575 PF01590 GAF domain AYJ59_01585 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_01590 PF00005 ABC transporter AYJ59_01595 PF02560 Cyanate lyase C-terminal domain AYJ59_01600 PF02203 Tar ligand binding domain homologue AYJ59_01600 PF00672 HAMP domain AYJ59_01600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_01620 PF04972 BON domain AYJ59_01620 PF00263 Bacterial type II and III secretion system protein AYJ59_01620 PF13629 Pilus formation protein N terminal region AYJ59_01630 PF00437 Type II/IV secretion system protein AYJ59_01680 PF18030 RimK PreATP-grasp domain AYJ59_01680 PF08443 RimK-like ATP-grasp domain AYJ59_01685 PF03448 MgtE intracellular N domain AYJ59_01685 PF01769 Divalent cation transporter AYJ59_01685 PF00571 CBS domain AYJ59_01690 PF02525 Flavodoxin-like fold AYJ59_01695 PF05191 Adenylate kinase, active site lid AYJ59_01705 PF00905 Penicillin binding protein transpeptidase domain AYJ59_01705 PF00912 Transglycosylase AYJ59_01705 PF17092 Penicillin-binding protein OB-like domain AYJ59_01715 PF01914 MarC family integral membrane protein AYJ59_01720 PF03755 YicC-like family, N-terminal region AYJ59_01720 PF08340 Domain of unknown function (DUF1732) AYJ59_01725 PF03725 3' exoribonuclease family, domain 2 AYJ59_01725 PF01138 3' exoribonuclease family, domain 1 AYJ59_01730 PF01725 Ham1 family AYJ59_01740 PF00005 ABC transporter AYJ59_01740 PF00571 CBS domain AYJ59_01745 PF07556 Protein of unknown function (DUF1538) AYJ59_01750 PF07556 Protein of unknown function (DUF1538) AYJ59_01765 PF00175 Oxidoreductase NAD-binding domain AYJ59_01765 PF00970 Oxidoreductase FAD-binding domain AYJ59_01765 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ59_01770 PF03372 Endonuclease/Exonuclease/phosphatase family AYJ59_01775 PF00551 Formyl transferase AYJ59_01775 PF01842 ACT domain AYJ59_01785 PF02472 Biopolymer transport protein ExbD/TolR AYJ59_01790 PF01618 MotA/TolQ/ExbB proton channel family AYJ59_01795 PF08351 Domain of unknown function (DUF1726) AYJ59_01795 PF13718 GNAT acetyltransferase 2 AYJ59_01795 PF05127 Helicase AYJ59_01795 PF17176 tRNA-binding domain AYJ59_01805 PF08448 PAS fold AYJ59_01805 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_01805 PF00563 EAL domain AYJ59_01810 PF08534 Redoxin AYJ59_01820 PF06167 Glucose-regulated metallo-peptidase M90 AYJ59_01825 PF06445 GyrI-like small molecule binding domain AYJ59_01830 PF00672 HAMP domain AYJ59_01830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_01830 PF02203 Tar ligand binding domain homologue AYJ59_01835 PF00205 Thiamine pyrophosphate enzyme, central domain AYJ59_01835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ59_01835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYJ59_01850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYJ59_01860 PF00890 FAD binding domain AYJ59_01860 PF02910 Fumarate reductase flavoprotein C-term AYJ59_01865 PF13085 2Fe-2S iron-sulfur cluster binding domain AYJ59_01875 PF12833 Helix-turn-helix domain AYJ59_01885 PF00144 Beta-lactamase AYJ59_01890 PF03707 Bacterial signalling protein N terminal repeat AYJ59_01890 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_01890 PF00563 EAL domain AYJ59_01915 PF03649 Uncharacterised protein family (UPF0014) AYJ59_01920 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AYJ59_01935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYJ59_01935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYJ59_01935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYJ59_01935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYJ59_01945 PF07715 TonB-dependent Receptor Plug Domain AYJ59_01945 PF00593 TonB dependent receptor AYJ59_01950 PF01556 DnaJ C terminal domain AYJ59_01950 PF00226 DnaJ domain AYJ59_01970 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ59_01980 PF01343 Peptidase family S49 AYJ59_01985 PF02203 Tar ligand binding domain homologue AYJ59_01985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_01985 PF00672 HAMP domain AYJ59_01990 PF00270 DEAD/DEAH box helicase AYJ59_01990 PF00271 Helicase conserved C-terminal domain AYJ59_01990 PF03880 DbpA RNA binding domain AYJ59_01995 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_01995 PF00563 EAL domain AYJ59_01995 PF03707 Bacterial signalling protein N terminal repeat AYJ59_02000 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ59_02020 PF05726 Pirin C-terminal cupin domain AYJ59_02020 PF02678 Pirin AYJ59_02025 PF03466 LysR substrate binding domain AYJ59_02025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_02030 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_02030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_02035 PF00873 AcrB/AcrD/AcrF family AYJ59_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_02040 PF12729 Four helix bundle sensory module for signal transduction AYJ59_02040 PF00672 HAMP domain AYJ59_02050 PF03773 Predicted permease AYJ59_02060 PF09382 RQC domain AYJ59_02060 PF00270 DEAD/DEAH box helicase AYJ59_02060 PF00271 Helicase conserved C-terminal domain AYJ59_02060 PF16124 RecQ zinc-binding AYJ59_02060 PF00570 HRDC domain AYJ59_02085 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AYJ59_02090 PF03707 Bacterial signalling protein N terminal repeat AYJ59_02090 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_02090 PF00563 EAL domain AYJ59_02095 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_02095 PF17151 Periplasmic sensor domain AYJ59_02100 PF04445 Putative SAM-dependent methyltransferase AYJ59_02105 PF00291 Pyridoxal-phosphate dependent enzyme AYJ59_02110 PF03167 Uracil DNA glycosylase superfamily AYJ59_02115 PF00155 Aminotransferase class I and II AYJ59_02115 PF00392 Bacterial regulatory proteins, gntR family AYJ59_02120 PF03473 MOSC domain AYJ59_02120 PF03475 3-alpha domain AYJ59_02135 PF07715 TonB-dependent Receptor Plug Domain AYJ59_02135 PF00593 TonB dependent receptor AYJ59_02155 PF03459 TOBE domain AYJ59_02160 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYJ59_02160 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYJ59_02165 PF00005 ABC transporter AYJ59_02190 PF03050 Transposase IS66 family AYJ59_02190 PF13005 zinc-finger binding domain of transposase IS66 AYJ59_02190 PF13007 Transposase C of IS166 homeodomain AYJ59_02190 PF13817 IS66 C-terminal element AYJ59_02200 PF00270 DEAD/DEAH box helicase AYJ59_02200 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AYJ59_02200 PF00271 Helicase conserved C-terminal domain AYJ59_02200 PF18074 Primosomal protein N C-terminal domain AYJ59_02200 PF17764 3′ DNA-binding domain (3′BD) AYJ59_02230 PF08241 Methyltransferase domain AYJ59_02235 PF00561 alpha/beta hydrolase fold AYJ59_02240 PF00155 Aminotransferase class I and II AYJ59_02245 PF06968 Biotin and Thiamin Synthesis associated domain AYJ59_02245 PF04055 Radical SAM superfamily AYJ59_02250 PF00156 Phosphoribosyl transferase domain AYJ59_02260 PF03190 Protein of unknown function, DUF255 AYJ59_02265 PF00902 Sec-independent protein translocase protein (TatC) AYJ59_02270 PF02416 mttA/Hcf106 family AYJ59_02275 PF02416 mttA/Hcf106 family AYJ59_02280 PF01230 HIT domain AYJ59_02285 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AYJ59_02290 PF00977 Histidine biosynthesis protein AYJ59_02295 PF00977 Histidine biosynthesis protein AYJ59_02300 PF00117 Glutamine amidotransferase class-I AYJ59_02305 PF00475 Imidazoleglycerol-phosphate dehydratase AYJ59_02310 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYJ59_02325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AYJ59_02325 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AYJ59_02330 PF13746 4Fe-4S dicluster domain AYJ59_02330 PF12801 4Fe-4S binding domain AYJ59_02330 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AYJ59_02340 PF00403 Heavy-metal-associated domain AYJ59_02355 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_02355 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AYJ59_02360 PF01493 GXGXG motif AYJ59_02360 PF00310 Glutamine amidotransferases class-II AYJ59_02360 PF04898 Glutamate synthase central domain AYJ59_02360 PF01645 Conserved region in glutamate synthase AYJ59_02365 PF01676 Metalloenzyme superfamily AYJ59_02365 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYJ59_02370 PF00581 Rhodanese-like domain AYJ59_02370 PF11127 Protein of unknown function (DUF2892) AYJ59_02375 PF00462 Glutaredoxin AYJ59_02380 PF02556 Preprotein translocase subunit SecB AYJ59_02385 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYJ59_02385 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYJ59_02390 PF00588 SpoU rRNA Methylase family AYJ59_02395 PF01180 Dihydroorotate dehydrogenase AYJ59_02400 PF00579 tRNA synthetases class I (W and Y) AYJ59_02400 PF01479 S4 domain AYJ59_02430 PF08279 HTH domain AYJ59_02430 PF02237 Biotin protein ligase C terminal domain AYJ59_02430 PF03099 Biotin/lipoate A/B protein ligase family AYJ59_02435 PF03309 Type III pantothenate kinase AYJ59_02445 PF07977 FabA-like domain AYJ59_02450 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ59_02450 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ59_02465 PF00448 SRP54-type protein, GTPase domain AYJ59_02465 PF02881 SRP54-type protein, helical bundle domain AYJ59_02470 PF00675 Insulinase (Peptidase family M16) AYJ59_02470 PF05193 Peptidase M16 inactive domain AYJ59_02475 PF05193 Peptidase M16 inactive domain AYJ59_02480 PF03788 LrgA family AYJ59_02485 PF04172 LrgB-like family AYJ59_02490 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_02490 PF08448 PAS fold AYJ59_02510 PF03707 Bacterial signalling protein N terminal repeat AYJ59_02510 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_02510 PF00563 EAL domain AYJ59_02515 PF01467 Cytidylyltransferase-like AYJ59_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_02525 PF03459 TOBE domain AYJ59_02535 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_02540 PF00005 ABC transporter AYJ59_02540 PF03459 TOBE domain AYJ59_02545 PF00690 Cation transporter/ATPase, N-terminus AYJ59_02545 PF00689 Cation transporting ATPase, C-terminus AYJ59_02555 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYJ59_02555 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYJ59_02555 PF06827 Zinc finger found in FPG and IleRS AYJ59_02565 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_02570 PF00471 Ribosomal protein L33 AYJ59_02580 PF04002 RadC-like JAB domain AYJ59_02590 PF04127 DNA / pantothenate metabolism flavoprotein AYJ59_02590 PF02441 Flavoprotein AYJ59_02600 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_02600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_02600 PF09308 LuxQ, periplasmic AYJ59_02600 PF00072 Response regulator receiver domain AYJ59_02605 PF00072 Response regulator receiver domain AYJ59_02615 PF02028 BCCT, betaine/carnitine/choline family transporter AYJ59_02625 PF00692 dUTPase AYJ59_02630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYJ59_02630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYJ59_02630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYJ59_02630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYJ59_02640 PF00155 Aminotransferase class I and II AYJ59_02645 PF04461 Protein of unknown function (DUF520) AYJ59_02660 PF00696 Amino acid kinase family AYJ59_02670 PF08447 PAS fold AYJ59_02670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_02670 PF08447 PAS fold AYJ59_02670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_02690 PF00175 Oxidoreductase NAD-binding domain AYJ59_02690 PF00258 Flavodoxin AYJ59_02690 PF00667 FAD binding domain AYJ59_02695 PF02541 Ppx/GppA phosphatase family AYJ59_02700 PF13089 Polyphosphate kinase N-terminal domain AYJ59_02700 PF17941 Polyphosphate kinase C-terminal domain 1 AYJ59_02700 PF13090 Polyphosphate kinase C-terminal domain 2 AYJ59_02700 PF02503 Polyphosphate kinase middle domain AYJ59_02705 PF01809 Putative membrane protein insertion efficiency factor AYJ59_02710 PF01979 Amidohydrolase family AYJ59_02720 PF08668 HDOD domain AYJ59_02720 PF00563 EAL domain AYJ59_02725 PF00171 Aldehyde dehydrogenase family AYJ59_02740 PF18665 Tetracyclin repressor-like, C-terminal domain AYJ59_02740 PF00440 Bacterial regulatory proteins, tetR family AYJ59_02745 PF00873 AcrB/AcrD/AcrF family AYJ59_02750 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_02750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_02755 PF00270 DEAD/DEAH box helicase AYJ59_02755 PF00271 Helicase conserved C-terminal domain AYJ59_02760 PF03641 Possible lysine decarboxylase AYJ59_02760 PF11892 Domain of unknown function (DUF3412) AYJ59_02760 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AYJ59_02765 PF01594 AI-2E family transporter AYJ59_02775 PF03707 Bacterial signalling protein N terminal repeat AYJ59_02775 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_02775 PF00563 EAL domain AYJ59_02785 PF08502 LeuA allosteric (dimerisation) domain AYJ59_02785 PF00682 HMGL-like AYJ59_02790 PF01037 Lrp/AsnC ligand binding domain AYJ59_02795 PF02028 BCCT, betaine/carnitine/choline family transporter AYJ59_02800 PF02649 Type I GTP cyclohydrolase folE2 AYJ59_02805 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ59_02805 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYJ59_02810 PF06039 Malate:quinone oxidoreductase (Mqo) AYJ59_02815 PF01022 Bacterial regulatory protein, arsR family AYJ59_02830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYJ59_02830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYJ59_02845 PF00762 Ferrochelatase AYJ59_02855 PF00313 'Cold-shock' DNA-binding domain AYJ59_02860 PF00551 Formyl transferase AYJ59_02860 PF01842 ACT domain AYJ59_02865 PF01266 FAD dependent oxidoreductase AYJ59_02875 PF17806 Sarcosine oxidase A3 domain AYJ59_02875 PF01571 Aminomethyltransferase folate-binding domain AYJ59_02875 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYJ59_02875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_02885 PF00120 Glutamine synthetase, catalytic domain AYJ59_02895 PF01493 GXGXG motif AYJ59_02900 PF01645 Conserved region in glutamate synthase AYJ59_02905 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYJ59_02905 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYJ59_02910 PF00958 GMP synthase C terminal domain AYJ59_02910 PF00117 Glutamine amidotransferase class-I AYJ59_02915 PF13508 Acetyltransferase (GNAT) domain AYJ59_02915 PF00583 Acetyltransferase (GNAT) family AYJ59_02920 PF00909 Ammonium Transporter Family AYJ59_02925 PF00543 Nitrogen regulatory protein P-II AYJ59_02940 PF00224 Pyruvate kinase, barrel domain AYJ59_02940 PF02887 Pyruvate kinase, alpha/beta domain AYJ59_02945 PF17158 Membrane-associated sensor, integral membrane domain AYJ59_02945 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_02950 PF01597 Glycine cleavage H-protein AYJ59_02955 PF10672 S-adenosylmethionine-dependent methyltransferase AYJ59_02955 PF17785 PUA-like domain AYJ59_02965 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYJ59_02965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYJ59_02975 PF02230 Phospholipase/Carboxylesterase AYJ59_03000 PF07664 Ferrous iron transport protein B C terminus AYJ59_03000 PF02421 Ferrous iron transport protein B AYJ59_03000 PF07670 Nucleoside recognition AYJ59_03010 PF07021 Methionine biosynthesis protein MetW AYJ59_03010 PF00561 alpha/beta hydrolase fold AYJ59_03015 PF00561 alpha/beta hydrolase fold AYJ59_03020 PF02325 YGGT family AYJ59_03025 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYJ59_03025 PF03807 NADP oxidoreductase coenzyme F420-dependent AYJ59_03030 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYJ59_03030 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYJ59_03035 PF08447 PAS fold AYJ59_03035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_03035 PF08447 PAS fold AYJ59_03035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_03045 PF01168 Alanine racemase, N-terminal domain AYJ59_03050 PF03976 Polyphosphate kinase 2 (PPK2) AYJ59_03065 PF01979 Amidohydrolase family AYJ59_03070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYJ59_03070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYJ59_03075 PF03652 Holliday junction resolvase AYJ59_03080 PF02622 Uncharacterized ACR, COG1678 AYJ59_03085 PF02424 ApbE family AYJ59_03090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_03090 PF08447 PAS fold AYJ59_03090 PF08447 PAS fold AYJ59_03090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_03095 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYJ59_03095 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYJ59_03105 PF04452 RNA methyltransferase AYJ59_03110 PF02219 Methylenetetrahydrofolate reductase AYJ59_03115 PF02772 S-adenosylmethionine synthetase, central domain AYJ59_03115 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYJ59_03115 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYJ59_03120 PF00563 EAL domain AYJ59_03120 PF00360 Phytochrome region AYJ59_03120 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_03120 PF01590 GAF domain AYJ59_03125 PF00731 AIR carboxylase AYJ59_03130 PF02222 ATP-grasp domain AYJ59_03130 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AYJ59_03135 PF03853 YjeF-related protein N-terminus AYJ59_03135 PF01256 Carbohydrate kinase AYJ59_03140 PF02673 Bacitracin resistance protein BacA AYJ59_03150 PF14841 FliG middle domain AYJ59_03150 PF14842 FliG N-terminal domain AYJ59_03150 PF01706 FliG C-terminal domain AYJ59_03160 PF02152 Dihydroneopterin aldolase AYJ59_03165 PF02660 Glycerol-3-phosphate acyltransferase AYJ59_03170 PF00814 Glycoprotease family AYJ59_03175 PF09424 Yqey-like protein AYJ59_03180 PF01807 CHC2 zinc finger AYJ59_03180 PF10410 DnaB-helicase binding domain of primase AYJ59_03180 PF08278 DNA primase DnaG DnaB-binding AYJ59_03180 PF13662 Toprim domain AYJ59_03180 PF08275 DNA primase catalytic core, N-terminal domain AYJ59_03185 PF04545 Sigma-70, region 4 AYJ59_03185 PF00140 Sigma-70 factor, region 1.2 AYJ59_03185 PF04542 Sigma-70 region 2 AYJ59_03185 PF03979 Sigma-70 factor, region 1.1 AYJ59_03185 PF04546 Sigma-70, non-essential region AYJ59_03185 PF04539 Sigma-70 region 3 AYJ59_03200 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_03200 PF17158 Membrane-associated sensor, integral membrane domain AYJ59_03225 PF09084 NMT1/THI5 like AYJ59_03230 PF02633 Creatinine amidohydrolase AYJ59_03235 PF00120 Glutamine synthetase, catalytic domain AYJ59_03240 PF00455 DeoR C terminal sensor domain AYJ59_03240 PF08220 DeoR-like helix-turn-helix domain AYJ59_03250 PF08402 TOBE domain AYJ59_03250 PF00005 ABC transporter AYJ59_03255 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_03260 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_03270 PF00202 Aminotransferase class-III AYJ59_03280 PF03069 Acetamidase/Formamidase family AYJ59_03285 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AYJ59_03290 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AYJ59_03295 PF00128 Alpha amylase, catalytic domain AYJ59_03300 PF00294 pfkB family carbohydrate kinase AYJ59_03305 PF05116 Sucrose-6F-phosphate phosphohydrolase AYJ59_03305 PF05166 YcgL domain AYJ59_03310 PF00862 Sucrose synthase AYJ59_03310 PF00534 Glycosyl transferases group 1 AYJ59_03325 PF01425 Amidase AYJ59_03330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ59_03330 PF00289 Biotin carboxylase, N-terminal domain AYJ59_03330 PF02785 Biotin carboxylase C-terminal domain AYJ59_03335 PF09347 Domain of unknown function (DUF1989) AYJ59_03350 PF00005 ABC transporter AYJ59_03355 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_03365 PF00850 Histone deacetylase domain AYJ59_03400 PF03099 Biotin/lipoate A/B protein ligase family AYJ59_03400 PF02237 Biotin protein ligase C terminal domain AYJ59_03400 PF08279 HTH domain AYJ59_03405 PF03309 Type III pantothenate kinase AYJ59_03415 PF07977 FabA-like domain AYJ59_03420 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ59_03420 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ59_03435 PF02881 SRP54-type protein, helical bundle domain AYJ59_03435 PF00448 SRP54-type protein, GTPase domain AYJ59_03440 PF00675 Insulinase (Peptidase family M16) AYJ59_03440 PF05193 Peptidase M16 inactive domain AYJ59_03445 PF05193 Peptidase M16 inactive domain AYJ59_03450 PF03788 LrgA family AYJ59_03455 PF04172 LrgB-like family AYJ59_03460 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_03460 PF08448 PAS fold AYJ59_03480 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_03480 PF03707 Bacterial signalling protein N terminal repeat AYJ59_03480 PF00563 EAL domain AYJ59_03485 PF01467 Cytidylyltransferase-like AYJ59_03495 PF03459 TOBE domain AYJ59_03495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_03505 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_03510 PF03459 TOBE domain AYJ59_03510 PF00005 ABC transporter AYJ59_03515 PF00690 Cation transporter/ATPase, N-terminus AYJ59_03515 PF00689 Cation transporting ATPase, C-terminus AYJ59_03525 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYJ59_03525 PF06827 Zinc finger found in FPG and IleRS AYJ59_03525 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYJ59_03535 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_03540 PF00471 Ribosomal protein L33 AYJ59_03550 PF04002 RadC-like JAB domain AYJ59_03560 PF04127 DNA / pantothenate metabolism flavoprotein AYJ59_03560 PF02441 Flavoprotein AYJ59_03570 PF09308 LuxQ, periplasmic AYJ59_03570 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_03570 PF00072 Response regulator receiver domain AYJ59_03570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_03575 PF00072 Response regulator receiver domain AYJ59_03585 PF02028 BCCT, betaine/carnitine/choline family transporter AYJ59_03595 PF00692 dUTPase AYJ59_03600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYJ59_03600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYJ59_03600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYJ59_03600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYJ59_03610 PF00155 Aminotransferase class I and II AYJ59_03615 PF04461 Protein of unknown function (DUF520) AYJ59_03630 PF00696 Amino acid kinase family AYJ59_03640 PF08447 PAS fold AYJ59_03640 PF08447 PAS fold AYJ59_03640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_03640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_03660 PF00667 FAD binding domain AYJ59_03660 PF00258 Flavodoxin AYJ59_03660 PF00175 Oxidoreductase NAD-binding domain AYJ59_03665 PF02541 Ppx/GppA phosphatase family AYJ59_03670 PF02503 Polyphosphate kinase middle domain AYJ59_03670 PF13089 Polyphosphate kinase N-terminal domain AYJ59_03670 PF17941 Polyphosphate kinase C-terminal domain 1 AYJ59_03670 PF13090 Polyphosphate kinase C-terminal domain 2 AYJ59_03675 PF01809 Putative membrane protein insertion efficiency factor AYJ59_03680 PF01979 Amidohydrolase family AYJ59_03690 PF00563 EAL domain AYJ59_03690 PF08668 HDOD domain AYJ59_03695 PF00171 Aldehyde dehydrogenase family AYJ59_03710 PF00440 Bacterial regulatory proteins, tetR family AYJ59_03710 PF18665 Tetracyclin repressor-like, C-terminal domain AYJ59_03715 PF00873 AcrB/AcrD/AcrF family AYJ59_03720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_03720 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_03725 PF00270 DEAD/DEAH box helicase AYJ59_03725 PF00271 Helicase conserved C-terminal domain AYJ59_03730 PF03641 Possible lysine decarboxylase AYJ59_03730 PF11892 Domain of unknown function (DUF3412) AYJ59_03730 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AYJ59_03735 PF01594 AI-2E family transporter AYJ59_03745 PF03707 Bacterial signalling protein N terminal repeat AYJ59_03745 PF00563 EAL domain AYJ59_03745 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_03755 PF00682 HMGL-like AYJ59_03755 PF08502 LeuA allosteric (dimerisation) domain AYJ59_03760 PF01037 Lrp/AsnC ligand binding domain AYJ59_03765 PF02028 BCCT, betaine/carnitine/choline family transporter AYJ59_03770 PF02649 Type I GTP cyclohydrolase folE2 AYJ59_03775 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ59_03775 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYJ59_03780 PF06039 Malate:quinone oxidoreductase (Mqo) AYJ59_03785 PF01022 Bacterial regulatory protein, arsR family AYJ59_03800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYJ59_03800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYJ59_03815 PF00762 Ferrochelatase AYJ59_03825 PF00313 'Cold-shock' DNA-binding domain AYJ59_03830 PF01842 ACT domain AYJ59_03830 PF00551 Formyl transferase AYJ59_03835 PF01266 FAD dependent oxidoreductase AYJ59_03845 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_03845 PF17806 Sarcosine oxidase A3 domain AYJ59_03845 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYJ59_03845 PF01571 Aminomethyltransferase folate-binding domain AYJ59_03855 PF00120 Glutamine synthetase, catalytic domain AYJ59_03865 PF01493 GXGXG motif AYJ59_03870 PF01645 Conserved region in glutamate synthase AYJ59_03875 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYJ59_03875 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYJ59_03880 PF00117 Glutamine amidotransferase class-I AYJ59_03880 PF00958 GMP synthase C terminal domain AYJ59_03885 PF13508 Acetyltransferase (GNAT) domain AYJ59_03885 PF00583 Acetyltransferase (GNAT) family AYJ59_03890 PF00909 Ammonium Transporter Family AYJ59_03895 PF00543 Nitrogen regulatory protein P-II AYJ59_03910 PF02887 Pyruvate kinase, alpha/beta domain AYJ59_03910 PF00224 Pyruvate kinase, barrel domain AYJ59_03915 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_03915 PF17158 Membrane-associated sensor, integral membrane domain AYJ59_03920 PF01597 Glycine cleavage H-protein AYJ59_03925 PF10672 S-adenosylmethionine-dependent methyltransferase AYJ59_03925 PF17785 PUA-like domain AYJ59_03935 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYJ59_03935 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYJ59_03945 PF02230 Phospholipase/Carboxylesterase AYJ59_03970 PF07664 Ferrous iron transport protein B C terminus AYJ59_03970 PF07670 Nucleoside recognition AYJ59_03970 PF02421 Ferrous iron transport protein B AYJ59_03980 PF07021 Methionine biosynthesis protein MetW AYJ59_03980 PF00561 alpha/beta hydrolase fold AYJ59_03985 PF00561 alpha/beta hydrolase fold AYJ59_03990 PF02325 YGGT family AYJ59_03995 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYJ59_03995 PF03807 NADP oxidoreductase coenzyme F420-dependent AYJ59_04000 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYJ59_04000 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYJ59_04005 PF08447 PAS fold AYJ59_04005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_04005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_04005 PF08447 PAS fold AYJ59_04015 PF01168 Alanine racemase, N-terminal domain AYJ59_04020 PF03976 Polyphosphate kinase 2 (PPK2) AYJ59_04035 PF01979 Amidohydrolase family AYJ59_04040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYJ59_04040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYJ59_04045 PF03652 Holliday junction resolvase AYJ59_04050 PF02622 Uncharacterized ACR, COG1678 AYJ59_04055 PF02424 ApbE family AYJ59_04060 PF08447 PAS fold AYJ59_04060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_04060 PF08447 PAS fold AYJ59_04060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_04065 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYJ59_04065 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYJ59_04075 PF04452 RNA methyltransferase AYJ59_04080 PF02219 Methylenetetrahydrofolate reductase AYJ59_04085 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYJ59_04085 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYJ59_04085 PF02772 S-adenosylmethionine synthetase, central domain AYJ59_04090 PF01590 GAF domain AYJ59_04090 PF00563 EAL domain AYJ59_04090 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_04090 PF00360 Phytochrome region AYJ59_04095 PF00731 AIR carboxylase AYJ59_04100 PF02222 ATP-grasp domain AYJ59_04100 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AYJ59_04105 PF03853 YjeF-related protein N-terminus AYJ59_04105 PF01256 Carbohydrate kinase AYJ59_04110 PF02673 Bacitracin resistance protein BacA AYJ59_04120 PF14842 FliG N-terminal domain AYJ59_04120 PF14841 FliG middle domain AYJ59_04120 PF01706 FliG C-terminal domain AYJ59_04130 PF02152 Dihydroneopterin aldolase AYJ59_04135 PF02660 Glycerol-3-phosphate acyltransferase AYJ59_04140 PF00814 Glycoprotease family AYJ59_04145 PF09424 Yqey-like protein AYJ59_04150 PF08278 DNA primase DnaG DnaB-binding AYJ59_04150 PF13662 Toprim domain AYJ59_04150 PF10410 DnaB-helicase binding domain of primase AYJ59_04150 PF08275 DNA primase catalytic core, N-terminal domain AYJ59_04150 PF01807 CHC2 zinc finger AYJ59_04155 PF04542 Sigma-70 region 2 AYJ59_04155 PF04546 Sigma-70, non-essential region AYJ59_04155 PF00140 Sigma-70 factor, region 1.2 AYJ59_04155 PF04539 Sigma-70 region 3 AYJ59_04155 PF04545 Sigma-70, region 4 AYJ59_04155 PF03979 Sigma-70 factor, region 1.1 AYJ59_04170 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_04170 PF17158 Membrane-associated sensor, integral membrane domain AYJ59_04195 PF09084 NMT1/THI5 like AYJ59_04200 PF02633 Creatinine amidohydrolase AYJ59_04205 PF00120 Glutamine synthetase, catalytic domain AYJ59_04210 PF08220 DeoR-like helix-turn-helix domain AYJ59_04210 PF00455 DeoR C terminal sensor domain AYJ59_04220 PF08402 TOBE domain AYJ59_04220 PF00005 ABC transporter AYJ59_04225 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_04230 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_04240 PF00202 Aminotransferase class-III AYJ59_04250 PF03069 Acetamidase/Formamidase family AYJ59_04255 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AYJ59_04260 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AYJ59_04265 PF00128 Alpha amylase, catalytic domain AYJ59_04270 PF00294 pfkB family carbohydrate kinase AYJ59_04275 PF05116 Sucrose-6F-phosphate phosphohydrolase AYJ59_04275 PF05166 YcgL domain AYJ59_04280 PF00534 Glycosyl transferases group 1 AYJ59_04280 PF00862 Sucrose synthase AYJ59_04295 PF01425 Amidase AYJ59_04300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ59_04300 PF00289 Biotin carboxylase, N-terminal domain AYJ59_04300 PF02785 Biotin carboxylase C-terminal domain AYJ59_04305 PF09347 Domain of unknown function (DUF1989) AYJ59_04320 PF00005 ABC transporter AYJ59_04325 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_04335 PF00850 Histone deacetylase domain AYJ59_04380 PF01022 Bacterial regulatory protein, arsR family AYJ59_04385 PF13180 PDZ domain AYJ59_04385 PF03572 Peptidase family S41 AYJ59_04390 PF01965 DJ-1/PfpI family AYJ59_04400 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_04400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_04405 PF00873 AcrB/AcrD/AcrF family AYJ59_04420 PF05114 Protein of unknown function (DUF692) AYJ59_04430 PF00563 EAL domain AYJ59_04430 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_04430 PF03707 Bacterial signalling protein N terminal repeat AYJ59_04435 PF03631 Virulence factor BrkB AYJ59_04440 PF04542 Sigma-70 region 2 AYJ59_04440 PF08281 Sigma-70, region 4 AYJ59_04480 PF00268 Ribonucleotide reductase, small chain AYJ59_04505 PF08534 Redoxin AYJ59_04510 PF05724 Thiopurine S-methyltransferase (TPMT) AYJ59_04515 PF13419 Haloacid dehalogenase-like hydrolase AYJ59_04520 PF00293 NUDIX domain AYJ59_04530 PF00271 Helicase conserved C-terminal domain AYJ59_04530 PF02151 UvrB/uvrC motif AYJ59_04530 PF12344 Ultra-violet resistance protein B AYJ59_04530 PF17757 UvrB interaction domain AYJ59_04530 PF04851 Type III restriction enzyme, res subunit AYJ59_04545 PF00246 Zinc carboxypeptidase AYJ59_04555 PF00883 Cytosol aminopeptidase family, catalytic domain AYJ59_04555 PF02789 Cytosol aminopeptidase family, N-terminal domain AYJ59_04565 PF03739 Lipopolysaccharide export system permease LptF/LptG AYJ59_04585 PF04055 Radical SAM superfamily AYJ59_04600 PF00043 Glutathione S-transferase, C-terminal domain AYJ59_04600 PF02798 Glutathione S-transferase, N-terminal domain AYJ59_04605 PF04386 Stringent starvation protein B AYJ59_04640 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal AYJ59_04640 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal AYJ59_04645 PF01070 FMN-dependent dehydrogenase AYJ59_04670 PF01541 GIY-YIG catalytic domain AYJ59_04680 PF02082 Transcriptional regulator AYJ59_04685 PF00042 Globin AYJ59_04685 PF00175 Oxidoreductase NAD-binding domain AYJ59_04685 PF00970 Oxidoreductase FAD-binding domain AYJ59_04700 PF02082 Transcriptional regulator AYJ59_04720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ59_04725 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AYJ59_04725 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AYJ59_04725 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AYJ59_04730 PF00849 RNA pseudouridylate synthase AYJ59_04730 PF01479 S4 domain AYJ59_04740 PF06271 RDD family AYJ59_04745 PF07690 Major Facilitator Superfamily AYJ59_04755 PF00034 Cytochrome c AYJ59_04760 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AYJ59_04760 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_04760 PF10518 TAT (twin-arginine translocation) pathway signal sequence AYJ59_04795 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AYJ59_04795 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AYJ59_04800 PF00101 Ribulose bisphosphate carboxylase, small chain AYJ59_04860 PF01725 Ham1 family AYJ59_04870 PF03466 LysR substrate binding domain AYJ59_04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_04875 PF02417 Chromate transporter AYJ59_04885 PF13361 UvrD-like helicase C-terminal domain AYJ59_04885 PF12705 PD-(D/E)XK nuclease superfamily AYJ59_04885 PF00580 UvrD/REP helicase N-terminal domain AYJ59_04900 PF02021 Uncharacterised protein family UPF0102 AYJ59_04910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYJ59_04915 PF01380 SIS domain AYJ59_04920 PF00483 Nucleotidyl transferase AYJ59_04925 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AYJ59_04930 PF04321 RmlD substrate binding domain AYJ59_04935 PF16363 GDP-mannose 4,6 dehydratase AYJ59_04940 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ59_04940 PF00970 Oxidoreductase FAD-binding domain AYJ59_04940 PF00175 Oxidoreductase NAD-binding domain AYJ59_04945 PF00483 Nucleotidyl transferase AYJ59_04950 PF16363 GDP-mannose 4,6 dehydratase AYJ59_04955 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYJ59_04960 PF00456 Transketolase, thiamine diphosphate binding domain AYJ59_04965 PF02780 Transketolase, C-terminal domain AYJ59_04965 PF02779 Transketolase, pyrimidine binding domain AYJ59_04970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYJ59_04995 PF00534 Glycosyl transferases group 1 AYJ59_04995 PF13439 Glycosyltransferase Family 4 AYJ59_05000 PF00534 Glycosyl transferases group 1 AYJ59_05000 PF13439 Glycosyltransferase Family 4 AYJ59_05005 PF16363 GDP-mannose 4,6 dehydratase AYJ59_05010 PF16363 GDP-mannose 4,6 dehydratase AYJ59_05015 PF00483 Nucleotidyl transferase AYJ59_05015 PF01050 Mannose-6-phosphate isomerase AYJ59_05020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYJ59_05020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYJ59_05020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYJ59_05020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYJ59_05025 PF02397 Bacterial sugar transferase AYJ59_05040 PF01068 ATP dependent DNA ligase domain AYJ59_05040 PF14743 DNA ligase OB-like domain AYJ59_05055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYJ59_05055 PF02824 TGS domain AYJ59_05055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYJ59_05055 PF03129 Anticodon binding domain AYJ59_05060 PF00707 Translation initiation factor IF-3, C-terminal domain AYJ59_05060 PF05198 Translation initiation factor IF-3, N-terminal domain AYJ59_05065 PF01632 Ribosomal protein L35 AYJ59_05070 PF00453 Ribosomal protein L20 AYJ59_05075 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYJ59_05075 PF01409 tRNA synthetases class II core domain (F) AYJ59_05080 PF01588 Putative tRNA binding domain AYJ59_05080 PF03147 Ferredoxin-fold anticodon binding domain AYJ59_05080 PF03484 tRNA synthetase B5 domain AYJ59_05080 PF03483 B3/4 domain AYJ59_05080 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AYJ59_05085 PF00216 Bacterial DNA-binding protein AYJ59_05105 PF00149 Calcineurin-like phosphoesterase AYJ59_05110 PF00398 Ribosomal RNA adenine dimethylase AYJ59_05115 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYJ59_05120 PF09312 SurA N-terminal domain AYJ59_05120 PF00639 PPIC-type PPIASE domain AYJ59_05125 PF04453 LPS transport system D AYJ59_05125 PF03968 OstA-like protein AYJ59_05130 PF01636 Phosphotransferase enzyme family AYJ59_05135 PF00483 Nucleotidyl transferase AYJ59_05145 PF03883 Peroxide stress protein YaaA AYJ59_05150 PF01430 Hsp33 protein AYJ59_05155 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AYJ59_05155 PF04055 Radical SAM superfamily AYJ59_05160 PF03099 Biotin/lipoate A/B protein ligase family AYJ59_05165 PF04359 Protein of unknown function (DUF493) AYJ59_05170 PF01063 Amino-transferase class IV AYJ59_05175 PF07943 Penicillin-binding protein 5, C-terminal domain AYJ59_05175 PF00768 D-alanyl-D-alanine carboxypeptidase AYJ59_05180 PF01098 Cell cycle protein AYJ59_05185 PF03717 Penicillin-binding Protein dimerisation domain AYJ59_05185 PF00905 Penicillin binding protein transpeptidase domain AYJ59_05195 PF04085 rod shape-determining protein MreC AYJ59_05205 PF02686 Glu-tRNAGln amidotransferase C subunit AYJ59_05210 PF01425 Amidase AYJ59_05215 PF02934 GatB/GatE catalytic domain AYJ59_05215 PF02637 GatB domain AYJ59_05220 PF01435 Peptidase family M48 AYJ59_05230 PF02657 Fe-S metabolism associated domain AYJ59_05240 PF02472 Biopolymer transport protein ExbD/TolR AYJ59_05245 PF01618 MotA/TolQ/ExbB proton channel family AYJ59_05250 PF00753 Metallo-beta-lactamase superfamily AYJ59_05275 PF00571 CBS domain AYJ59_05275 PF00478 IMP dehydrogenase / GMP reductase domain AYJ59_05280 PF00117 Glutamine amidotransferase class-I AYJ59_05280 PF00958 GMP synthase C terminal domain AYJ59_05280 PF02540 NAD synthase AYJ59_05285 PF14437 MafB19-like deaminase AYJ59_05290 PF03975 CheD chemotactic sensory transduction AYJ59_05295 PF01627 Hpt domain AYJ59_05295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_05295 PF02895 Signal transducing histidine kinase, homodimeric domain AYJ59_05295 PF01584 CheW-like domain AYJ59_05310 PF00183 Hsp90 protein AYJ59_05315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ59_05315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ59_05320 PF00005 ABC transporter AYJ59_05320 PF12848 ABC transporter AYJ59_05335 PF13439 Glycosyltransferase Family 4 AYJ59_05335 PF00534 Glycosyl transferases group 1 AYJ59_05345 PF00534 Glycosyl transferases group 1 AYJ59_05345 PF13439 Glycosyltransferase Family 4 AYJ59_05355 PF01219 Prokaryotic diacylglycerol kinase AYJ59_05360 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYJ59_05360 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYJ59_05370 PF00085 Thioredoxin AYJ59_05375 PF05192 MutS domain III AYJ59_05375 PF05188 MutS domain II AYJ59_05375 PF01624 MutS domain I AYJ59_05375 PF00488 MutS domain V AYJ59_05375 PF05190 MutS family domain IV AYJ59_05380 PF02464 Competence-damaged protein AYJ59_05385 PF00154 recA bacterial DNA recombination protein AYJ59_05390 PF02631 RecX family AYJ59_05395 PF01411 tRNA synthetases class II (A) AYJ59_05395 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYJ59_05395 PF02272 DHHA1 domain AYJ59_05400 PF01842 ACT domain AYJ59_05400 PF13840 ACT domain AYJ59_05400 PF00696 Amino acid kinase family AYJ59_05405 PF02599 Global regulator protein family AYJ59_05415 PF03707 Bacterial signalling protein N terminal repeat AYJ59_05415 PF00563 EAL domain AYJ59_05415 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_05425 PF00924 Mechanosensitive ion channel AYJ59_05425 PF05552 Conserved TM helix AYJ59_05430 PF00365 Phosphofructokinase AYJ59_05435 PF01612 3'-5' exonuclease AYJ59_05435 PF00570 HRDC domain AYJ59_05440 PF08245 Mur ligase middle domain AYJ59_05440 PF02875 Mur ligase family, glutamate ligase domain AYJ59_05440 PF01225 Mur ligase family, catalytic domain AYJ59_05450 PF04315 Elongation factor P hydroxylase AYJ59_05455 PF00202 Aminotransferase class-III AYJ59_05465 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AYJ59_05480 PF02630 SCO1/SenC AYJ59_05490 PF00291 Pyridoxal-phosphate dependent enzyme AYJ59_05490 PF00585 C-terminal regulatory domain of Threonine dehydratase AYJ59_05495 PF01812 5-formyltetrahydrofolate cyclo-ligase family AYJ59_05505 PF03695 Uncharacterised protein family (UPF0149) AYJ59_05510 PF05195 Aminopeptidase P, N-terminal domain AYJ59_05510 PF00557 Metallopeptidase family M24 AYJ59_05515 PF01494 FAD binding domain AYJ59_05520 PF01494 FAD binding domain AYJ59_05525 PF07885 Ion channel AYJ59_05530 PF03466 LysR substrate binding domain AYJ59_05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_05535 PF13638 PIN domain AYJ59_05535 PF02562 PhoH-like protein AYJ59_05540 PF00578 AhpC/TSA family AYJ59_05545 PF00701 Dihydrodipicolinate synthetase family AYJ59_05555 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AYJ59_05555 PF02769 AIR synthase related protein, C-terminal domain AYJ59_05555 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AYJ59_05565 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYJ59_05565 PF05362 Lon protease (S16) C-terminal proteolytic domain AYJ59_05565 PF00004 ATPase family associated with various cellular activities (AAA) AYJ59_05570 PF00994 Probable molybdopterin binding domain AYJ59_05575 PF05175 Methyltransferase small domain AYJ59_05580 PF00194 Eukaryotic-type carbonic anhydrase AYJ59_05595 PF03781 Sulfatase-modifying factor enzyme 1 AYJ59_05595 PF12867 DinB superfamily AYJ59_05600 PF00155 Aminotransferase class I and II AYJ59_05605 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AYJ59_05615 PF00248 Aldo/keto reductase family AYJ59_05635 PF01264 Chorismate synthase AYJ59_05650 PF01053 Cys/Met metabolism PLP-dependent enzyme AYJ59_05655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYJ59_05665 PF06865 Pyrimidine/purine nucleoside phosphorylase AYJ59_05670 PF01740 STAS domain AYJ59_05670 PF00916 Sulfate permease family AYJ59_05675 PF00873 AcrB/AcrD/AcrF family AYJ59_05680 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_05680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_05685 PF00579 tRNA synthetases class I (W and Y) AYJ59_05690 PF12627 Probable RNA and SrmB- binding site of polymerase A AYJ59_05690 PF12626 Polymerase A arginine-rich C-terminus AYJ59_05690 PF01743 Poly A polymerase head domain AYJ59_05695 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYJ59_05700 PF02548 Ketopantoate hydroxymethyltransferase AYJ59_05705 PF02569 Pantoate-beta-alanine ligase AYJ59_05710 PF01618 MotA/TolQ/ExbB proton channel family AYJ59_05715 PF13677 Membrane MotB of proton-channel complex MotA/MotB AYJ59_05715 PF00691 OmpA family AYJ59_05720 PF02261 Aspartate decarboxylase AYJ59_05725 PF00311 Phosphoenolpyruvate carboxylase AYJ59_05735 PF00664 ABC transporter transmembrane region AYJ59_05735 PF00005 ABC transporter AYJ59_05745 PF01370 NAD dependent epimerase/dehydratase family AYJ59_05750 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AYJ59_05775 PF00534 Glycosyl transferases group 1 AYJ59_05775 PF13439 Glycosyltransferase Family 4 AYJ59_05785 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AYJ59_05790 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYJ59_05790 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYJ59_05790 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYJ59_05795 PF01370 NAD dependent epimerase/dehydratase family AYJ59_05805 PF02545 Maf-like protein AYJ59_05810 PF10150 Ribonuclease E/G family AYJ59_05810 PF00575 S1 RNA binding domain AYJ59_05855 PF00133 tRNA synthetases class I (I, L, M and V) AYJ59_05855 PF10458 Valyl tRNA synthetase tRNA binding arm AYJ59_05855 PF08264 Anticodon-binding domain of tRNA AYJ59_05860 PF00669 Bacterial flagellin N-terminal helical region AYJ59_05860 PF00700 Bacterial flagellin C-terminal helical region AYJ59_05870 PF00909 Ammonium Transporter Family AYJ59_05875 PF00543 Nitrogen regulatory protein P-II AYJ59_05885 PF03710 Glutamate-ammonia ligase adenylyltransferase AYJ59_05885 PF08335 GlnD PII-uridylyltransferase AYJ59_05890 PF00719 Inorganic pyrophosphatase AYJ59_05895 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AYJ59_05905 PF02926 THUMP domain AYJ59_05905 PF02568 Thiamine biosynthesis protein (ThiI) AYJ59_05910 PF01464 Transglycosylase SLT domain AYJ59_05910 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYJ59_05915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYJ59_05915 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_05920 PF08461 Ribonuclease R winged-helix domain AYJ59_05920 PF00773 RNB domain AYJ59_05920 PF00575 S1 RNA binding domain AYJ59_05920 PF08206 Ribonuclease B OB domain AYJ59_05920 PF17876 Cold shock domain AYJ59_05925 PF00588 SpoU rRNA Methylase family AYJ59_05925 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYJ59_05930 PF00294 pfkB family carbohydrate kinase AYJ59_05935 PF13545 Crp-like helix-turn-helix domain AYJ59_05935 PF00027 Cyclic nucleotide-binding domain AYJ59_05940 PF00691 OmpA family AYJ59_05945 PF01433 Peptidase family M1 domain AYJ59_05945 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AYJ59_05945 PF11940 Domain of unknown function (DUF3458) Ig-like fold AYJ59_05990 PF01584 CheW-like domain AYJ59_05990 PF00072 Response regulator receiver domain AYJ59_06000 PF00460 Flagella basal body rod protein AYJ59_06005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ59_06005 PF00460 Flagella basal body rod protein AYJ59_06010 PF03963 Flagellar hook capping protein - N-terminal region AYJ59_06015 PF00460 Flagella basal body rod protein AYJ59_06015 PF07559 Flagellar basal body protein FlaE AYJ59_06015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ59_06015 PF07196 Flagellin hook IN motif AYJ59_06020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ59_06020 PF00460 Flagella basal body rod protein AYJ59_06025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ59_06025 PF00460 Flagella basal body rod protein AYJ59_06030 PF02107 Flagellar L-ring protein AYJ59_06035 PF02119 Flagellar P-ring protein AYJ59_06040 PF10135 Rod binding protein AYJ59_06040 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AYJ59_06045 PF00460 Flagella basal body rod protein AYJ59_06045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ59_06050 PF00669 Bacterial flagellin N-terminal helical region AYJ59_06050 PF00700 Bacterial flagellin C-terminal helical region AYJ59_06050 PF00460 Flagella basal body rod protein AYJ59_06055 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AYJ59_06055 PF01464 Transglycosylase SLT domain AYJ59_06060 PF01370 NAD dependent epimerase/dehydratase family AYJ59_06065 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYJ59_06075 PF08666 SAF domain AYJ59_06075 PF03102 NeuB family AYJ59_06080 PF02350 UDP-N-acetylglucosamine 2-epimerase AYJ59_06100 PF00977 Histidine biosynthesis protein AYJ59_06105 PF00117 Glutamine amidotransferase class-I AYJ59_06125 PF02348 Cytidylyltransferase AYJ59_06130 PF00483 Nucleotidyl transferase AYJ59_06140 PF00669 Bacterial flagellin N-terminal helical region AYJ59_06140 PF00700 Bacterial flagellin C-terminal helical region AYJ59_06145 PF03646 FlaG protein AYJ59_06150 PF00700 Bacterial flagellin C-terminal helical region AYJ59_06150 PF00669 Bacterial flagellin N-terminal helical region AYJ59_06160 PF00669 Bacterial flagellin N-terminal helical region AYJ59_06160 PF00700 Bacterial flagellin C-terminal helical region AYJ59_06165 PF00669 Bacterial flagellin N-terminal helical region AYJ59_06165 PF00700 Bacterial flagellin C-terminal helical region AYJ59_06170 PF07195 Flagellar hook-associated protein 2 C-terminus AYJ59_06170 PF02465 Flagellar hook-associated protein 2 N-terminus AYJ59_06170 PF07196 Flagellin hook IN motif AYJ59_06175 PF02561 Flagellar protein FliS AYJ59_06185 PF00072 Response regulator receiver domain AYJ59_06185 PF00158 Sigma-54 interaction domain AYJ59_06185 PF02954 Bacterial regulatory protein, Fis family AYJ59_06190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_06190 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_06190 PF00989 PAS fold AYJ59_06195 PF00158 Sigma-54 interaction domain AYJ59_06195 PF02954 Bacterial regulatory protein, Fis family AYJ59_06195 PF00072 Response regulator receiver domain AYJ59_06200 PF02049 Flagellar hook-basal body complex protein FliE AYJ59_06205 PF08345 Flagellar M-ring protein C-terminal AYJ59_06205 PF01514 Secretory protein of YscJ/FliF family AYJ59_06210 PF14842 FliG N-terminal domain AYJ59_06210 PF01706 FliG C-terminal domain AYJ59_06210 PF14841 FliG middle domain AYJ59_06220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ59_06220 PF18269 T3SS EscN ATPase C-terminal domain AYJ59_06235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_06240 PF01618 MotA/TolQ/ExbB proton channel family AYJ59_06245 PF13677 Membrane MotB of proton-channel complex MotA/MotB AYJ59_06245 PF00691 OmpA family AYJ59_06255 PF02154 Flagellar motor switch protein FliM AYJ59_06255 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AYJ59_06260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AYJ59_06275 PF01668 SmpB protein AYJ59_06280 PF03364 Polyketide cyclase / dehydrase and lipid transport AYJ59_06285 PF03658 RnfH family Ubiquitin AYJ59_06295 PF01475 Ferric uptake regulator family AYJ59_06300 PF03707 Bacterial signalling protein N terminal repeat AYJ59_06300 PF00563 EAL domain AYJ59_06300 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_06305 PF00005 ABC transporter AYJ59_06305 PF12848 ABC transporter AYJ59_06310 PF00464 Serine hydroxymethyltransferase AYJ59_06315 PF03477 ATP cone domain AYJ59_06320 PF01872 RibD C-terminal domain AYJ59_06320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYJ59_06325 PF00677 Lumazine binding domain AYJ59_06330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYJ59_06330 PF00925 GTP cyclohydrolase II AYJ59_06335 PF00885 6,7-dimethyl-8-ribityllumazine synthase AYJ59_06340 PF01029 NusB family AYJ59_06345 PF00586 AIR synthase related protein, N-terminal domain AYJ59_06345 PF02769 AIR synthase related protein, C-terminal domain AYJ59_06350 PF00672 HAMP domain AYJ59_06350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_06350 PF02203 Tar ligand binding domain homologue AYJ59_06355 PF00793 DAHP synthetase I family AYJ59_06365 PF06750 Bacterial Peptidase A24 N-terminal domain AYJ59_06365 PF01478 Type IV leader peptidase family AYJ59_06375 PF01242 6-pyruvoyl tetrahydropterin synthase AYJ59_06380 PF00348 Polyprenyl synthetase AYJ59_06385 PF00578 AhpC/TSA family AYJ59_06385 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYJ59_06400 PF00085 Thioredoxin AYJ59_06405 PF10415 Fumarase C C-terminus AYJ59_06405 PF00206 Lyase AYJ59_06410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_06410 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_06410 PF09308 LuxQ, periplasmic AYJ59_06410 PF00072 Response regulator receiver domain AYJ59_06415 PF00196 Bacterial regulatory proteins, luxR family AYJ59_06415 PF00072 Response regulator receiver domain AYJ59_06445 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_06445 PF17158 Membrane-associated sensor, integral membrane domain AYJ59_06450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYJ59_06460 PF00549 CoA-ligase AYJ59_06460 PF08442 ATP-grasp domain AYJ59_06465 PF02629 CoA binding domain AYJ59_06465 PF00549 CoA-ligase AYJ59_06470 PF00795 Carbon-nitrogen hydrolase AYJ59_06470 PF02540 NAD synthase AYJ59_06475 PF13525 Outer membrane lipoprotein AYJ59_06480 PF00849 RNA pseudouridylate synthase AYJ59_06480 PF01479 S4 domain AYJ59_06490 PF02080 TrkA-C domain AYJ59_06490 PF02254 TrkA-N domain AYJ59_06490 PF00999 Sodium/hydrogen exchanger family AYJ59_06495 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYJ59_06495 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYJ59_06500 PF01510 N-acetylmuramoyl-L-alanine amidase AYJ59_06510 PF00258 Flavodoxin AYJ59_06515 PF01250 Ribosomal protein S6 AYJ59_06520 PF01084 Ribosomal protein S18 AYJ59_06530 PF03948 Ribosomal protein L9, C-terminal domain AYJ59_06530 PF01281 Ribosomal protein L9, N-terminal domain AYJ59_06535 PF00772 DnaB-like helicase N terminal domain AYJ59_06535 PF03796 DnaB-like helicase C terminal domain AYJ59_06540 PF01168 Alanine racemase, N-terminal domain AYJ59_06540 PF00842 Alanine racemase, C-terminal domain AYJ59_06545 PF00293 NUDIX domain AYJ59_06555 PF01554 MatE AYJ59_06560 PF02810 SEC-C motif AYJ59_06590 PF02203 Tar ligand binding domain homologue AYJ59_06590 PF00672 HAMP domain AYJ59_06590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_06595 PF00474 Sodium:solute symporter family AYJ59_06610 PF02547 Queuosine biosynthesis protein AYJ59_06615 PF01702 Queuine tRNA-ribosyltransferase AYJ59_06620 PF02699 Preprotein translocase subunit AYJ59_06625 PF02355 Protein export membrane protein AYJ59_06625 PF13721 SecD export protein N-terminal TM region AYJ59_06625 PF07549 SecD/SecF GG Motif AYJ59_06630 PF02355 Protein export membrane protein AYJ59_06630 PF07549 SecD/SecF GG Motif AYJ59_06640 PF00849 RNA pseudouridylate synthase AYJ59_06645 PF03692 Putative zinc- or iron-chelating domain AYJ59_06650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYJ59_06665 PF00919 Uncharacterized protein family UPF0004 AYJ59_06665 PF18693 TRAM domain AYJ59_06665 PF04055 Radical SAM superfamily AYJ59_06670 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYJ59_06670 PF00578 AhpC/TSA family AYJ59_06690 PF00037 4Fe-4S binding domain AYJ59_06715 PF00291 Pyridoxal-phosphate dependent enzyme AYJ59_06730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ59_06735 PF09997 Predicted membrane protein (DUF2238) AYJ59_06750 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_06760 PF00563 EAL domain AYJ59_06760 PF03707 Bacterial signalling protein N terminal repeat AYJ59_06760 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_06765 PF00933 Glycosyl hydrolase family 3 N terminal domain AYJ59_06770 PF00924 Mechanosensitive ion channel AYJ59_06775 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AYJ59_06775 PF01565 FAD binding domain AYJ59_06780 PF00209 Sodium:neurotransmitter symporter family AYJ59_06795 PF07687 Peptidase dimerisation domain AYJ59_06795 PF01546 Peptidase family M20/M25/M40 AYJ59_06800 PF03960 ArsC family AYJ59_06805 PF14602 Hexapeptide repeat of succinyl-transferase AYJ59_06805 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AYJ59_06810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYJ59_06815 PF01909 Nucleotidyltransferase domain AYJ59_06815 PF01966 HD domain AYJ59_06815 PF08335 GlnD PII-uridylyltransferase AYJ59_06820 PF00557 Metallopeptidase family M24 AYJ59_06825 PF00318 Ribosomal protein S2 AYJ59_06830 PF00889 Elongation factor TS AYJ59_06835 PF00696 Amino acid kinase family AYJ59_06840 PF01765 Ribosome recycling factor AYJ59_06845 PF01255 Putative undecaprenyl diphosphate synthase AYJ59_06855 PF02163 Peptidase family M50 AYJ59_06855 PF17820 PDZ domain AYJ59_06860 PF01103 Surface antigen AYJ59_06860 PF07244 Surface antigen variable number repeat AYJ59_06870 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYJ59_06870 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ59_06875 PF07977 FabA-like domain AYJ59_06880 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ59_06880 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AYJ59_06885 PF02684 Lipid-A-disaccharide synthetase AYJ59_06890 PF01351 Ribonuclease HII AYJ59_06895 PF01584 CheW-like domain AYJ59_06895 PF00072 Response regulator receiver domain AYJ59_06900 PF13307 Helicase C-terminal domain AYJ59_06900 PF06733 DEAD_2 AYJ59_06905 PF00814 Glycoprotease family AYJ59_06920 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AYJ59_06920 PF18381 YcaO cyclodehydratase C-terminal domain AYJ59_06925 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AYJ59_06930 PF11734 TilS substrate C-terminal domain AYJ59_06930 PF01171 PP-loop family AYJ59_06935 PF06418 CTP synthase N-terminus AYJ59_06935 PF00117 Glutamine amidotransferase class-I AYJ59_06940 PF00793 DAHP synthetase I family AYJ59_06945 PF03952 Enolase, N-terminal domain AYJ59_06945 PF00113 Enolase, C-terminal TIM barrel domain AYJ59_06950 PF04977 Septum formation initiator AYJ59_06955 PF01713 Smr domain AYJ59_06960 PF01975 Survival protein SurE AYJ59_06970 PF09335 SNARE associated Golgi protein AYJ59_06975 PF01476 LysM domain AYJ59_06975 PF01551 Peptidase family M23 AYJ59_06980 PF04430 Protein of unknown function (DUF498/DUF598) AYJ59_06985 PF00155 Aminotransferase class I and II AYJ59_06990 PF03447 Homoserine dehydrogenase, NAD binding domain AYJ59_06990 PF01842 ACT domain AYJ59_06990 PF00742 Homoserine dehydrogenase AYJ59_07000 PF00291 Pyridoxal-phosphate dependent enzyme AYJ59_07010 PF05728 Uncharacterised protein family (UPF0227) AYJ59_07030 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYJ59_07035 PF13419 Haloacid dehalogenase-like hydrolase AYJ59_07040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYJ59_07045 PF04354 ZipA, C-terminal FtsZ-binding domain AYJ59_07050 PF00533 BRCA1 C Terminus (BRCT) domain AYJ59_07050 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYJ59_07050 PF03120 NAD-dependent DNA ligase OB-fold domain AYJ59_07050 PF12826 Helix-hairpin-helix motif AYJ59_07050 PF01653 NAD-dependent DNA ligase adenylation domain AYJ59_07055 PF04751 Protein of unknown function (DUF615) AYJ59_07060 PF00892 EamA-like transporter family AYJ59_07065 PF17763 Glutaminase/Asparaginase C-terminal domain AYJ59_07065 PF00710 Asparaginase, N-terminal AYJ59_07070 PF00717 Peptidase S24-like AYJ59_07070 PF01726 LexA DNA binding domain AYJ59_07075 PF03795 YCII-related domain AYJ59_07080 PF04279 Intracellular septation protein A AYJ59_07085 PF02811 PHP domain AYJ59_07090 PF01300 Telomere recombination AYJ59_07095 PF02163 Peptidase family M50 AYJ59_07100 PF00849 RNA pseudouridylate synthase AYJ59_07100 PF01479 S4 domain AYJ59_07120 PF01145 SPFH domain / Band 7 family AYJ59_07120 PF16200 C-terminal region of band_7 AYJ59_07150 PF01758 Sodium Bile acid symporter family AYJ59_07170 PF01645 Conserved region in glutamate synthase AYJ59_07175 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYJ59_07200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ59_07200 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AYJ59_07205 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AYJ59_07205 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AYJ59_07210 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AYJ59_07215 PF02824 TGS domain AYJ59_07215 PF13291 ACT domain AYJ59_07215 PF04607 Region found in RelA / SpoT proteins AYJ59_07220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_07220 PF00672 HAMP domain AYJ59_07220 PF12729 Four helix bundle sensory module for signal transduction AYJ59_07220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_07220 PF00672 HAMP domain AYJ59_07220 PF12729 Four helix bundle sensory module for signal transduction AYJ59_07225 PF01207 Dihydrouridine synthase (Dus) AYJ59_07230 PF13742 OB-fold nucleic acid binding domain AYJ59_07230 PF02601 Exonuclease VII, large subunit AYJ59_07240 PF03960 ArsC family AYJ59_07250 PF04963 Sigma-54 factor, core binding domain AYJ59_07250 PF04552 Sigma-54, DNA binding domain AYJ59_07250 PF00309 Sigma-54 factor, Activator interacting domain (AID) AYJ59_07255 PF00535 Glycosyl transferase family 2 AYJ59_07255 PF07238 PilZ domain AYJ59_07255 PF03552 Cellulose synthase AYJ59_07265 PF00072 Response regulator receiver domain AYJ59_07275 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AYJ59_07285 PF00216 Bacterial DNA-binding protein AYJ59_07290 PF00575 S1 RNA binding domain AYJ59_07295 PF02224 Cytidylate kinase AYJ59_07300 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYJ59_07305 PF02153 Prephenate dehydrogenase AYJ59_07310 PF00155 Aminotransferase class I and II AYJ59_07315 PF00800 Prephenate dehydratase AYJ59_07315 PF01817 Chorismate mutase type II AYJ59_07315 PF01842 ACT domain AYJ59_07320 PF00266 Aminotransferase class-V AYJ59_07325 PF03989 DNA gyrase C-terminal domain, beta-propeller AYJ59_07325 PF00521 DNA gyrase/topoisomerase IV, subunit A AYJ59_07335 PF13419 Haloacid dehalogenase-like hydrolase AYJ59_07340 PF00106 short chain dehydrogenase AYJ59_07350 PF00391 PEP-utilising enzyme, mobile domain AYJ59_07350 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYJ59_07350 PF02896 PEP-utilising enzyme, TIM barrel domain AYJ59_07355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ59_07355 PF00005 ABC transporter AYJ59_07360 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ59_07360 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_07365 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_07370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ59_07400 PF00216 Bacterial DNA-binding protein AYJ59_07405 PF05362 Lon protease (S16) C-terminal proteolytic domain AYJ59_07405 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYJ59_07405 PF00004 ATPase family associated with various cellular activities (AAA) AYJ59_07410 PF10431 C-terminal, D2-small domain, of ClpB protein AYJ59_07410 PF06689 ClpX C4-type zinc finger AYJ59_07410 PF07724 AAA domain (Cdc48 subfamily) AYJ59_07415 PF00574 Clp protease AYJ59_07420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYJ59_07420 PF05697 Bacterial trigger factor protein (TF) AYJ59_07420 PF05698 Bacterial trigger factor protein (TF) C-terminus AYJ59_07430 PF00005 ABC transporter AYJ59_07430 PF12848 ABC transporter AYJ59_07435 PF00005 ABC transporter AYJ59_07440 PF12704 MacB-like periplasmic core domain AYJ59_07440 PF02687 FtsX-like permease family AYJ59_07445 PF03458 UPF0126 domain AYJ59_07450 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_07460 PF03461 TRCF domain AYJ59_07460 PF17757 UvrB interaction domain AYJ59_07460 PF00271 Helicase conserved C-terminal domain AYJ59_07460 PF00270 DEAD/DEAH box helicase AYJ59_07460 PF02559 CarD-like/TRCF domain AYJ59_07470 PF12823 Domain of unknown function (DUF3817) AYJ59_07475 PF03776 Septum formation topological specificity factor MinE AYJ59_07480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYJ59_07485 PF05209 Septum formation inhibitor MinC, N-terminal domain AYJ59_07485 PF03775 Septum formation inhibitor MinC, C-terminal domain AYJ59_07505 PF01420 Type I restriction modification DNA specificity domain AYJ59_07510 PF12161 HsdM N-terminal domain AYJ59_07510 PF02384 N-6 DNA Methylase AYJ59_07515 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AYJ59_07515 PF08463 EcoEI R protein C-terminal AYJ59_07515 PF00271 Helicase conserved C-terminal domain AYJ59_07515 PF04851 Type III restriction enzyme, res subunit AYJ59_07535 PF01066 CDP-alcohol phosphatidyltransferase AYJ59_07540 PF01541 GIY-YIG catalytic domain AYJ59_07540 PF12826 Helix-hairpin-helix motif AYJ59_07540 PF02151 UvrB/uvrC motif AYJ59_07540 PF08459 UvrC Helix-hairpin-helix N-terminal AYJ59_07545 PF01343 Peptidase family S49 AYJ59_07550 PF00072 Response regulator receiver domain AYJ59_07550 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_07555 PF00330 Aconitase family (aconitate hydratase) AYJ59_07555 PF06434 Aconitate hydratase 2 N-terminus AYJ59_07555 PF11791 Aconitate B N-terminal domain AYJ59_07580 PF01741 Large-conductance mechanosensitive channel, MscL AYJ59_07590 PF13614 AAA domain AYJ59_07620 PF00905 Penicillin binding protein transpeptidase domain AYJ59_07625 PF01965 DJ-1/PfpI family AYJ59_07630 PF00107 Zinc-binding dehydrogenase AYJ59_07630 PF08240 Alcohol dehydrogenase GroES-like domain AYJ59_07635 PF00756 Putative esterase AYJ59_07640 PF09335 SNARE associated Golgi protein AYJ59_07655 PF02600 Disulfide bond formation protein DsbB AYJ59_07680 PF08328 Adenylosuccinate lyase C-terminal AYJ59_07680 PF00206 Lyase AYJ59_07685 PF08007 Cupin superfamily protein AYJ59_07690 PF00892 EamA-like transporter family AYJ59_07700 PF05193 Peptidase M16 inactive domain AYJ59_07700 PF00675 Insulinase (Peptidase family M16) AYJ59_07700 PF08367 Peptidase M16C associated AYJ59_07705 PF00575 S1 RNA binding domain AYJ59_07705 PF03725 3' exoribonuclease family, domain 2 AYJ59_07705 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AYJ59_07705 PF01138 3' exoribonuclease family, domain 1 AYJ59_07705 PF00013 KH domain AYJ59_07710 PF00312 Ribosomal protein S15 AYJ59_07725 PF09157 Pseudouridine synthase II TruB, C-terminal AYJ59_07725 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYJ59_07725 PF16198 tRNA pseudouridylate synthase B C-terminal domain AYJ59_07730 PF02033 Ribosome-binding factor A AYJ59_07735 PF04760 Translation initiation factor IF-2, N-terminal region AYJ59_07735 PF08364 Bacterial translation initiation factor IF-2 associated region AYJ59_07735 PF11987 Translation-initiation factor 2 AYJ59_07735 PF00009 Elongation factor Tu GTP binding domain AYJ59_07740 PF13184 NusA-like KH domain AYJ59_07740 PF08529 NusA N-terminal domain AYJ59_07745 PF17384 RimP C-terminal SH3 domain AYJ59_07745 PF02576 RimP N-terminal domain AYJ59_07760 PF00474 Sodium:solute symporter family AYJ59_07765 PF04341 Protein of unknown function, DUF485 AYJ59_07770 PF16177 Acetyl-coenzyme A synthetase N-terminus AYJ59_07770 PF00501 AMP-binding enzyme AYJ59_07770 PF13193 AMP-binding enzyme C-terminal domain AYJ59_07775 PF01336 OB-fold nucleic acid binding domain AYJ59_07775 PF02811 PHP domain AYJ59_07775 PF14579 Helix-hairpin-helix motif AYJ59_07775 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYJ59_07775 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYJ59_07780 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AYJ59_07785 PF01176 Translation initiation factor 1A / IF-1 AYJ59_07790 PF10431 C-terminal, D2-small domain, of ClpB protein AYJ59_07790 PF00004 ATPase family associated with various cellular activities (AAA) AYJ59_07790 PF07724 AAA domain (Cdc48 subfamily) AYJ59_07790 PF02861 Clp amino terminal domain, pathogenicity island component AYJ59_07790 PF17871 AAA lid domain AYJ59_07795 PF02617 ATP-dependent Clp protease adaptor protein ClpS AYJ59_07800 PF00226 DnaJ domain AYJ59_07800 PF01556 DnaJ C terminal domain AYJ59_07805 PF03831 PhnA domain AYJ59_07805 PF08274 PhnA Zinc-Ribbon AYJ59_07810 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_07810 PF00072 Response regulator receiver domain AYJ59_07815 PF01709 Transcriptional regulator AYJ59_07825 PF03971 Monomeric isocitrate dehydrogenase AYJ59_07830 PF00849 RNA pseudouridylate synthase AYJ59_07840 PF04356 Protein of unknown function (DUF489) AYJ59_07850 PF13145 PPIC-type PPIASE domain AYJ59_07855 PF00072 Response regulator receiver domain AYJ59_07860 PF00709 Adenylosuccinate synthetase AYJ59_07865 PF13393 Histidyl-tRNA synthetase AYJ59_07875 PF01145 SPFH domain / Band 7 family AYJ59_07880 PF01145 SPFH domain / Band 7 family AYJ59_07880 PF12221 Bacterial membrane protein N terminal AYJ59_07885 PF16360 GTP-binding GTPase Middle Region AYJ59_07885 PF13167 GTP-binding GTPase N-terminal AYJ59_07885 PF01926 50S ribosome-binding GTPase AYJ59_07890 PF17209 Hfq protein AYJ59_07900 PF01119 DNA mismatch repair protein, C-terminal domain AYJ59_07900 PF08676 MutL C terminal dimerisation domain AYJ59_07905 PF11741 AMIN domain AYJ59_07905 PF01520 N-acetylmuramoyl-L-alanine amidase AYJ59_07910 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AYJ59_07915 PF08331 Domain of unknown function (DUF1730) AYJ59_07920 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_07920 PF03707 Bacterial signalling protein N terminal repeat AYJ59_07920 PF00563 EAL domain AYJ59_07925 PF01966 HD domain AYJ59_07925 PF13286 Phosphohydrolase-associated domain AYJ59_07945 PF03006 Haemolysin-III related AYJ59_07950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYJ59_07950 PF04073 Aminoacyl-tRNA editing domain AYJ59_07950 PF03129 Anticodon binding domain AYJ59_07955 PF01810 LysE type translocator AYJ59_07960 PF00884 Sulfatase AYJ59_07965 PF01219 Prokaryotic diacylglycerol kinase AYJ59_07970 PF01638 HxlR-like helix-turn-helix AYJ59_07975 PF00881 Nitroreductase family AYJ59_07980 PF00313 'Cold-shock' DNA-binding domain AYJ59_08000 PF01926 50S ribosome-binding GTPase AYJ59_08005 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AYJ59_08025 PF00578 AhpC/TSA family AYJ59_08030 PF00308 Bacterial dnaA protein AYJ59_08040 PF00586 AIR synthase related protein, N-terminal domain AYJ59_08040 PF02769 AIR synthase related protein, C-terminal domain AYJ59_08045 PF00551 Formyl transferase AYJ59_08055 PF00692 dUTPase AYJ59_08060 PF10609 NUBPL iron-transfer P-loop NTPase AYJ59_08065 PF08447 PAS fold AYJ59_08065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_08065 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_08065 PF00989 PAS fold AYJ59_08070 PF00072 Response regulator receiver domain AYJ59_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_08075 PF00072 Response regulator receiver domain AYJ59_08080 PF13466 STAS domain AYJ59_08085 PF01588 Putative tRNA binding domain AYJ59_08085 PF09334 tRNA synthetases class I (M) AYJ59_08090 PF02508 Rnf-Nqr subunit, membrane protein AYJ59_08095 PF04060 Putative Fe-S cluster AYJ59_08105 PF03116 NQR2, RnfD, RnfE family AYJ59_08110 PF04205 FMN-binding domain AYJ59_08115 PF02508 Rnf-Nqr subunit, membrane protein AYJ59_08120 PF10576 Iron-sulfur binding domain of endonuclease III AYJ59_08120 PF00730 HhH-GPD superfamily base excision DNA repair protein AYJ59_08120 PF00633 Helix-hairpin-helix motif AYJ59_08150 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYJ59_08150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYJ59_08180 PF00881 Nitroreductase family AYJ59_08200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYJ59_08210 PF12843 Putative quorum-sensing-regulated virulence factor AYJ59_08220 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_08220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYJ59_08225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYJ59_08225 PF02817 e3 binding domain AYJ59_08225 PF00364 Biotin-requiring enzyme AYJ59_08230 PF17831 Pyruvate dehydrogenase E1 component middle domain AYJ59_08230 PF00456 Transketolase, thiamine diphosphate binding domain AYJ59_08235 PF00293 NUDIX domain AYJ59_08245 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_08245 PF00563 EAL domain AYJ59_08245 PF03707 Bacterial signalling protein N terminal repeat AYJ59_08250 PF02881 SRP54-type protein, helical bundle domain AYJ59_08250 PF00448 SRP54-type protein, GTPase domain AYJ59_08250 PF02978 Signal peptide binding domain AYJ59_08255 PF01578 Cytochrome C assembly protein AYJ59_08260 PF00571 CBS domain AYJ59_08260 PF03471 Transporter associated domain AYJ59_08260 PF01595 Cyclin M transmembrane N-terminal domain AYJ59_08265 PF00459 Inositol monophosphatase family AYJ59_08270 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_08270 PF18415 Histidine kinase receptor ArcB trans-membrane domain AYJ59_08270 PF00989 PAS fold AYJ59_08270 PF01627 Hpt domain AYJ59_08270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_08270 PF00072 Response regulator receiver domain AYJ59_08275 PF18073 Rubredoxin metal binding domain AYJ59_08280 PF02167 Cytochrome C1 family AYJ59_08285 PF00032 Cytochrome b(C-terminal)/b6/petD AYJ59_08285 PF00033 Cytochrome b/b6/petB AYJ59_08290 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AYJ59_08290 PF00355 Rieske [2Fe-2S] domain AYJ59_08295 PF01784 NIF3 (NGG1p interacting factor 3) AYJ59_08300 PF00815 Histidinol dehydrogenase AYJ59_08305 PF01634 ATP phosphoribosyltransferase AYJ59_08310 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYJ59_08320 PF01061 ABC-2 type transporter AYJ59_08325 PF00005 ABC transporter AYJ59_08340 PF02470 MlaD protein AYJ59_08345 PF02405 Permease MlaE AYJ59_08350 PF00005 ABC transporter AYJ59_08360 PF01699 Sodium/calcium exchanger protein AYJ59_08375 PF03968 OstA-like protein AYJ59_08380 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ59_08380 PF00005 ABC transporter AYJ59_08385 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYJ59_08390 PF00571 CBS domain AYJ59_08390 PF01769 Divalent cation transporter AYJ59_08390 PF03448 MgtE intracellular N domain AYJ59_08395 PF00009 Elongation factor Tu GTP binding domain AYJ59_08395 PF16658 Class II release factor RF3, C-terminal domain AYJ59_08395 PF03144 Elongation factor Tu domain 2 AYJ59_08400 PF00072 Response regulator receiver domain AYJ59_08400 PF00486 Transcriptional regulatory protein, C terminal AYJ59_08405 PF00672 HAMP domain AYJ59_08405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_08405 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_08410 PF01292 Prokaryotic cytochrome b561 AYJ59_08425 PF13686 DsrE/DsrF/DrsH-like family AYJ59_08430 PF00593 TonB dependent receptor AYJ59_08430 PF07715 TonB-dependent Receptor Plug Domain AYJ59_08435 PF07685 CobB/CobQ-like glutamine amidotransferase domain AYJ59_08440 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AYJ59_08440 PF12557 Cob(I)alamin adenosyltransferase N terminal AYJ59_08445 PF01497 Periplasmic binding protein AYJ59_08455 PF02348 Cytidylyltransferase AYJ59_08460 PF03966 Trm112p-like protein AYJ59_08465 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AYJ59_08470 PF03772 Competence protein AYJ59_08470 PF00753 Metallo-beta-lactamase superfamily AYJ59_08480 PF05362 Lon protease (S16) C-terminal proteolytic domain AYJ59_08480 PF13654 AAA domain AYJ59_08485 PF00909 Ammonium Transporter Family AYJ59_08505 PF01590 GAF domain AYJ59_08505 PF00360 Phytochrome region AYJ59_08505 PF00563 EAL domain AYJ59_08505 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_08515 PF04408 Helicase associated domain (HA2) AYJ59_08515 PF00271 Helicase conserved C-terminal domain AYJ59_08515 PF00270 DEAD/DEAH box helicase AYJ59_08515 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AYJ59_08515 PF11898 Domain of unknown function (DUF3418) AYJ59_08525 PF13443 Cro/C1-type HTH DNA-binding domain AYJ59_08535 PF00563 EAL domain AYJ59_08535 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_08535 PF03707 Bacterial signalling protein N terminal repeat AYJ59_08540 PF00690 Cation transporter/ATPase, N-terminus AYJ59_08540 PF00689 Cation transporting ATPase, C-terminus AYJ59_08545 PF16200 C-terminal region of band_7 AYJ59_08545 PF01145 SPFH domain / Band 7 family AYJ59_08575 PF00873 AcrB/AcrD/AcrF family AYJ59_08580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_08600 PF02525 Flavodoxin-like fold AYJ59_08615 PF01544 CorA-like Mg2+ transporter protein AYJ59_08655 PF13091 PLD-like domain AYJ59_08655 PF13396 Phospholipase_D-nuclease N-terminal AYJ59_08660 PF00654 Voltage gated chloride channel AYJ59_08665 PF00083 Sugar (and other) transporter AYJ59_08680 PF00753 Metallo-beta-lactamase superfamily AYJ59_08685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYJ59_08690 PF00929 Exonuclease AYJ59_08700 PF00075 RNase H AYJ59_08710 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYJ59_08710 PF00753 Metallo-beta-lactamase superfamily AYJ59_08715 PF01476 LysM domain AYJ59_08715 PF01464 Transglycosylase SLT domain AYJ59_08720 PF01464 Transglycosylase SLT domain AYJ59_08720 PF14718 Soluble lytic murein transglycosylase L domain AYJ59_08725 PF01406 tRNA synthetases class I (C) catalytic domain AYJ59_08725 PF09190 DALR domain AYJ59_08730 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYJ59_08730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AYJ59_08735 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYJ59_08740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYJ59_08745 PF00149 Calcineurin-like phosphoesterase AYJ59_08755 PF00375 Sodium:dicarboxylate symporter family AYJ59_08765 PF04608 Phosphatidylglycerophosphatase A AYJ59_08770 PF00764 Arginosuccinate synthase AYJ59_08775 PF02666 Phosphatidylserine decarboxylase AYJ59_08780 PF00543 Nitrogen regulatory protein P-II AYJ59_08790 PF00072 Response regulator receiver domain AYJ59_08790 PF00158 Sigma-54 interaction domain AYJ59_08790 PF02954 Bacterial regulatory protein, Fis family AYJ59_08795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_08795 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_08795 PF00989 PAS fold AYJ59_08825 PF06508 Queuosine biosynthesis protein QueC AYJ59_08835 PF00691 OmpA family AYJ59_08840 PF07676 WD40-like Beta Propeller Repeat AYJ59_08840 PF04052 TolB amino-terminal domain AYJ59_08850 PF02472 Biopolymer transport protein ExbD/TolR AYJ59_08855 PF01618 MotA/TolQ/ExbB proton channel family AYJ59_08860 PF05496 Holliday junction DNA helicase RuvB P-loop domain AYJ59_08860 PF05491 RuvB C-terminal winged helix domain AYJ59_08860 PF17864 RuvB AAA lid domain AYJ59_08870 PF07499 RuvA, C-terminal domain AYJ59_08870 PF01330 RuvA N terminal domain AYJ59_08875 PF02075 Crossover junction endodeoxyribonuclease RuvC AYJ59_08880 PF02445 Quinolinate synthetase A protein AYJ59_08885 PF00152 tRNA synthetases class II (D, K and N) AYJ59_08885 PF01336 OB-fold nucleic acid binding domain AYJ59_08885 PF02938 GAD domain AYJ59_08895 PF00106 short chain dehydrogenase AYJ59_08900 PF01734 Patatin-like phospholipase AYJ59_08910 PF00480 ROK family AYJ59_08920 PF04305 Protein of unknown function (DUF455) AYJ59_08935 PF03449 Transcription elongation factor, N-terminal AYJ59_08935 PF01272 Transcription elongation factor, GreA/GreB, C-term AYJ59_08940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ59_08940 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYJ59_08940 PF02142 MGS-like domain AYJ59_08945 PF00117 Glutamine amidotransferase class-I AYJ59_08945 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AYJ59_08955 PF07690 Major Facilitator Superfamily AYJ59_08960 PF01063 Amino-transferase class IV AYJ59_08970 PF00155 Aminotransferase class I and II AYJ59_08970 PF00392 Bacterial regulatory proteins, gntR family AYJ59_08980 PF00472 RF-1 domain AYJ59_08985 PF08447 PAS fold AYJ59_08985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_08985 PF08447 PAS fold AYJ59_08985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_08995 PF01113 Dihydrodipicolinate reductase, N-terminus AYJ59_08995 PF05173 Dihydrodipicolinate reductase, C-terminus AYJ59_09000 PF00226 DnaJ domain AYJ59_09000 PF00684 DnaJ central domain AYJ59_09000 PF01556 DnaJ C terminal domain AYJ59_09005 PF00012 Hsp70 protein AYJ59_09010 PF01025 GrpE AYJ59_09015 PF01628 HrcA protein C terminal domain AYJ59_09020 PF01513 ATP-NAD kinase AYJ59_09025 PF02463 RecF/RecN/SMC N terminal domain AYJ59_09040 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_09040 PF00563 EAL domain AYJ59_09040 PF03707 Bacterial signalling protein N terminal repeat AYJ59_09045 PF00563 EAL domain AYJ59_09045 PF08668 HDOD domain AYJ59_09050 PF11799 impB/mucB/samB family C-terminal domain AYJ59_09050 PF00817 impB/mucB/samB family AYJ59_09050 PF13438 Domain of unknown function (DUF4113) AYJ59_09055 PF00717 Peptidase S24-like AYJ59_09065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_09065 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_09065 PF00672 HAMP domain AYJ59_09065 PF01627 Hpt domain AYJ59_09065 PF00072 Response regulator receiver domain AYJ59_09065 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AYJ59_09070 PF00072 Response regulator receiver domain AYJ59_09085 PF00563 EAL domain AYJ59_09085 PF00196 Bacterial regulatory proteins, luxR family AYJ59_09095 PF00361 Proton-conducting membrane transporter AYJ59_09100 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AYJ59_09100 PF00361 Proton-conducting membrane transporter AYJ59_09105 PF00361 Proton-conducting membrane transporter AYJ59_09105 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYJ59_09110 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYJ59_09115 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AYJ59_09120 PF12838 4Fe-4S dicluster domain AYJ59_09125 PF00146 NADH dehydrogenase AYJ59_09130 PF00384 Molybdopterin oxidoreductase AYJ59_09130 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYJ59_09130 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AYJ59_09135 PF10531 SLBB domain AYJ59_09135 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYJ59_09135 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYJ59_09145 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AYJ59_09150 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AYJ59_09155 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYJ59_09160 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AYJ59_09170 PF03840 Preprotein translocase SecG subunit AYJ59_09175 PF00121 Triosephosphate isomerase AYJ59_09180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYJ59_09180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYJ59_09180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYJ59_09180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYJ59_09185 PF00809 Pterin binding enzyme AYJ59_09190 PF01434 Peptidase family M41 AYJ59_09190 PF00004 ATPase family associated with various cellular activities (AAA) AYJ59_09190 PF17862 AAA+ lid domain AYJ59_09190 PF06480 FtsH Extracellular AYJ59_09195 PF01728 FtsJ-like methyltransferase AYJ59_09200 PF01985 CRS1 / YhbY (CRM) domain AYJ59_09205 PF01053 Cys/Met metabolism PLP-dependent enzyme AYJ59_09210 PF00156 Phosphoribosyl transferase domain AYJ59_09220 PF02875 Mur ligase family, glutamate ligase domain AYJ59_09220 PF08245 Mur ligase middle domain AYJ59_09225 PF17848 Acetyl-coA carboxylase zinc finger domain AYJ59_09225 PF01039 Carboxyl transferase domain AYJ59_09230 PF00290 Tryptophan synthase alpha chain AYJ59_09235 PF00291 Pyridoxal-phosphate dependent enzyme AYJ59_09240 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AYJ59_09245 PF01416 tRNA pseudouridine synthase AYJ59_09250 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYJ59_09250 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYJ59_09260 PF01551 Peptidase family M23 AYJ59_09260 PF04225 Opacity-associated protein A LysM-like domain AYJ59_09265 PF00180 Isocitrate/isopropylmalate dehydrogenase AYJ59_09270 PF00694 Aconitase C-terminal domain AYJ59_09275 PF00330 Aconitase family (aconitate hydratase) AYJ59_09300 PF10518 TAT (twin-arginine translocation) pathway signal sequence AYJ59_09300 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AYJ59_09300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_09305 PF01132 Elongation factor P (EF-P) OB domain AYJ59_09305 PF08207 Elongation factor P (EF-P) KOW-like domain AYJ59_09305 PF09285 Elongation factor P, C-terminal AYJ59_09310 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AYJ59_09325 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_09325 PF17158 Membrane-associated sensor, integral membrane domain AYJ59_09330 PF00578 AhpC/TSA family AYJ59_09335 PF01625 Peptide methionine sulfoxide reductase AYJ59_09340 PF01370 NAD dependent epimerase/dehydratase family AYJ59_09340 PF08338 Domain of unknown function (DUF1731) AYJ59_09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_09345 PF03466 LysR substrate binding domain AYJ59_09350 PF01292 Prokaryotic cytochrome b561 AYJ59_09355 PF04264 YceI-like domain AYJ59_09360 PF00271 Helicase conserved C-terminal domain AYJ59_09360 PF00270 DEAD/DEAH box helicase AYJ59_09365 PF17200 Single Cache domain 2 AYJ59_09365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_09365 PF00672 HAMP domain AYJ59_09370 PF02203 Tar ligand binding domain homologue AYJ59_09370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_09370 PF00672 HAMP domain AYJ59_09380 PF08448 PAS fold AYJ59_09380 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_09380 PF00563 EAL domain AYJ59_09385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_09385 PF00989 PAS fold AYJ59_09385 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_09390 PF00196 Bacterial regulatory proteins, luxR family AYJ59_09390 PF00072 Response regulator receiver domain AYJ59_09400 PF12704 MacB-like periplasmic core domain AYJ59_09400 PF00005 ABC transporter AYJ59_09400 PF02687 FtsX-like permease family AYJ59_09405 PF12704 MacB-like periplasmic core domain AYJ59_09405 PF00005 ABC transporter AYJ59_09405 PF02687 FtsX-like permease family AYJ59_09410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_09410 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_09415 PF02321 Outer membrane efflux protein AYJ59_09420 PF18719 ArlS sensor domain AYJ59_09420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_09420 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_09425 PF00072 Response regulator receiver domain AYJ59_09425 PF00486 Transcriptional regulatory protein, C terminal AYJ59_09430 PF02595 Glycerate kinase family AYJ59_09445 PF14403 Circularly permuted ATP-grasp type 2 AYJ59_09450 PF00128 Alpha amylase, catalytic domain AYJ59_09470 PF05231 MASE1 AYJ59_09470 PF00563 EAL domain AYJ59_09495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYJ59_09495 PF02403 Seryl-tRNA synthetase N-terminal domain AYJ59_09500 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AYJ59_09505 PF12002 MgsA AAA+ ATPase C terminal AYJ59_09505 PF00004 ATPase family associated with various cellular activities (AAA) AYJ59_09505 PF16193 AAA C-terminal domain AYJ59_09510 PF03548 Outer membrane lipoprotein carrier protein LolA AYJ59_09515 PF01580 FtsK/SpoIIIE family AYJ59_09515 PF17854 FtsK alpha domain AYJ59_09515 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AYJ59_09515 PF09397 Ftsk gamma domain AYJ59_09520 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_09525 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYJ59_09525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYJ59_09530 PF01784 NIF3 (NGG1p interacting factor 3) AYJ59_09540 PF00672 HAMP domain AYJ59_09540 PF02743 Cache domain AYJ59_09540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_09545 PF00072 Response regulator receiver domain AYJ59_09545 PF01339 CheB methylesterase AYJ59_09550 PF01739 CheR methyltransferase, SAM binding domain AYJ59_09550 PF03705 CheR methyltransferase, all-alpha domain AYJ59_09560 PF01584 CheW-like domain AYJ59_09565 PF00072 Response regulator receiver domain AYJ59_09580 PF01584 CheW-like domain AYJ59_09585 PF01584 CheW-like domain AYJ59_09585 PF02895 Signal transducing histidine kinase, homodimeric domain AYJ59_09585 PF01627 Hpt domain AYJ59_09585 PF07194 P2 response regulator binding domain AYJ59_09585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_09590 PF04344 Chemotaxis phosphatase, CheZ AYJ59_09595 PF00072 Response regulator receiver domain AYJ59_09600 PF04539 Sigma-70 region 3 AYJ59_09600 PF04542 Sigma-70 region 2 AYJ59_09600 PF04545 Sigma-70, region 4 AYJ59_09605 PF10609 NUBPL iron-transfer P-loop NTPase AYJ59_09610 PF00448 SRP54-type protein, GTPase domain AYJ59_09615 PF00771 FHIPEP family AYJ59_09620 PF01312 FlhB HrpN YscU SpaS Family AYJ59_09625 PF01311 Bacterial export proteins, family 1 AYJ59_09630 PF01313 Bacterial export proteins, family 3 AYJ59_09635 PF00813 FliP family AYJ59_09640 PF04347 Flagellar biosynthesis protein, FliO AYJ59_09645 PF01648 4'-phosphopantetheinyl transferase superfamily AYJ59_09650 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AYJ59_09655 PF11967 Recombination protein O N terminal AYJ59_09655 PF02565 Recombination protein O C terminal AYJ59_09660 PF07650 KH domain AYJ59_09660 PF01926 50S ribosome-binding GTPase AYJ59_09665 PF00035 Double-stranded RNA binding motif AYJ59_09665 PF14622 Ribonuclease-III-like AYJ59_09670 PF10502 Signal peptidase, peptidase S26 AYJ59_09675 PF03144 Elongation factor Tu domain 2 AYJ59_09675 PF06421 GTP-binding protein LepA C-terminus AYJ59_09675 PF00009 Elongation factor Tu GTP binding domain AYJ59_09675 PF00679 Elongation factor G C-terminus AYJ59_09680 PF13180 PDZ domain AYJ59_09690 PF00890 FAD binding domain AYJ59_09690 PF02910 Fumarate reductase flavoprotein C-term AYJ59_09695 PF01584 CheW-like domain AYJ59_09700 PF01571 Aminomethyltransferase folate-binding domain AYJ59_09705 PF00152 tRNA synthetases class II (D, K and N) AYJ59_09705 PF01336 OB-fold nucleic acid binding domain AYJ59_09715 PF00107 Zinc-binding dehydrogenase AYJ59_09715 PF08240 Alcohol dehydrogenase GroES-like domain AYJ59_09730 PF06719 AraC-type transcriptional regulator N-terminus AYJ59_09730 PF12833 Helix-turn-helix domain AYJ59_09735 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYJ59_09735 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYJ59_09755 PF02203 Tar ligand binding domain homologue AYJ59_09755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_09755 PF00672 HAMP domain AYJ59_09760 PF00005 ABC transporter AYJ59_09760 PF00664 ABC transporter transmembrane region AYJ59_09765 PF01026 TatD related DNase AYJ59_09770 PF09115 DNA polymerase III, delta subunit, C terminal AYJ59_09775 PF02223 Thymidylate kinase AYJ59_09780 PF02618 YceG-like family AYJ59_09785 PF01063 Amino-transferase class IV AYJ59_09790 PF04715 Anthranilate synthase component I, N terminal region AYJ59_09790 PF00425 chorismate binding enzyme AYJ59_09795 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ59_09795 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ59_09800 PF00550 Phosphopantetheine attachment site AYJ59_09810 PF00698 Acyl transferase domain AYJ59_09815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYJ59_09815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYJ59_09820 PF02504 Fatty acid synthesis protein AYJ59_09825 PF01783 Ribosomal L32p protein family AYJ59_09835 PF02545 Maf-like protein AYJ59_09840 PF13419 Haloacid dehalogenase-like hydrolase AYJ59_09845 PF00849 RNA pseudouridylate synthase AYJ59_09845 PF01479 S4 domain AYJ59_09850 PF00575 S1 RNA binding domain AYJ59_09850 PF10150 Ribonuclease E/G family AYJ59_09850 PF12111 Polyribonucleotide phosphorylase C terminal AYJ59_09855 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYJ59_09860 PF00849 RNA pseudouridylate synthase AYJ59_09875 PF10411 Disulfide bond isomerase protein N-terminus AYJ59_09875 PF13098 Thioredoxin-like domain AYJ59_09880 PF02899 Phage integrase, N-terminal SAM-like domain AYJ59_09880 PF00589 Phage integrase family AYJ59_09885 PF01245 Ribosomal protein L19 AYJ59_09890 PF01746 tRNA (Guanine-1)-methyltransferase AYJ59_09895 PF01782 RimM N-terminal domain AYJ59_09895 PF05239 PRC-barrel domain AYJ59_09900 PF00886 Ribosomal protein S16 AYJ59_09905 PF00486 Transcriptional regulatory protein, C terminal AYJ59_09905 PF00072 Response regulator receiver domain AYJ59_09910 PF02646 RmuC family AYJ59_09930 PF00482 Type II secretion system (T2SS), protein F AYJ59_09935 PF00437 Type II/IV secretion system protein AYJ59_09945 PF00263 Bacterial type II and III secretion system protein AYJ59_09945 PF03958 Bacterial type II/III secretion system short domain AYJ59_09950 PF13401 AAA domain AYJ59_09950 PF01471 Putative peptidoglycan binding domain AYJ59_09960 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AYJ59_09960 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AYJ59_09965 PF10369 Small subunit of acetolactate synthase AYJ59_09970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYJ59_09970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ59_09970 PF00205 Thiamine pyrophosphate enzyme, central domain AYJ59_09975 PF00929 Exonuclease AYJ59_09980 PF01435 Peptidase family M48 AYJ59_09985 PF01329 Pterin 4 alpha carbinolamine dehydratase AYJ59_09990 PF03193 RsgA GTPase AYJ59_09995 PF08402 TOBE domain AYJ59_09995 PF00005 ABC transporter AYJ59_10005 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_10010 PF00034 Cytochrome c AYJ59_10015 PF00034 Cytochrome c AYJ59_10020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ59_10020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ59_10025 PF13183 4Fe-4S dicluster domain AYJ59_10025 PF01565 FAD binding domain AYJ59_10025 PF02913 FAD linked oxidases, C-terminal domain AYJ59_10030 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYJ59_10030 PF01926 50S ribosome-binding GTPase AYJ59_10035 PF13360 PQQ-like domain AYJ59_10035 PF01011 PQQ enzyme repeat AYJ59_10045 PF13393 Histidyl-tRNA synthetase AYJ59_10045 PF03129 Anticodon binding domain AYJ59_10055 PF04055 Radical SAM superfamily AYJ59_10060 PF00334 Nucleoside diphosphate kinase AYJ59_10065 PF01521 Iron-sulphur cluster biosynthesis AYJ59_10070 PF02082 Transcriptional regulator AYJ59_10075 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ59_10080 PF00588 SpoU rRNA Methylase family AYJ59_10085 PF00459 Inositol monophosphatase family AYJ59_10100 PF00682 HMGL-like AYJ59_10100 PF08502 LeuA allosteric (dimerisation) domain AYJ59_10105 PF01066 CDP-alcohol phosphatidyltransferase AYJ59_10110 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYJ59_10110 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYJ59_10110 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYJ59_10115 PF00342 Phosphoglucose isomerase AYJ59_10120 PF00483 Nucleotidyl transferase AYJ59_10125 PF01206 Sulfurtransferase TusA AYJ59_10130 PF13181 Tetratricopeptide repeat AYJ59_10130 PF01435 Peptidase family M48 AYJ59_10160 PF00920 Dehydratase family AYJ59_10165 PF00696 Amino acid kinase family AYJ59_10165 PF00583 Acetyltransferase (GNAT) family AYJ59_10170 PF00929 Exonuclease AYJ59_10175 PF00462 Glutaredoxin AYJ59_10180 PF00733 Asparagine synthase AYJ59_10180 PF13537 Glutamine amidotransferase domain AYJ59_10185 PF01121 Dephospho-CoA kinase AYJ59_10195 PF02581 Thiamine monophosphate synthase AYJ59_10200 PF00155 Aminotransferase class I and II AYJ59_10205 PF01960 ArgJ family AYJ59_10210 PF02810 SEC-C motif AYJ59_10210 PF01043 SecA preprotein cross-linking domain AYJ59_10210 PF07517 SecA DEAD-like domain AYJ59_10210 PF07516 SecA Wing and Scaffold domain AYJ59_10215 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AYJ59_10220 PF02491 SHS2 domain inserted in FTSA AYJ59_10225 PF03799 Cell division protein FtsQ AYJ59_10225 PF08478 POTRA domain, FtsQ-type AYJ59_10230 PF07478 D-ala D-ala ligase C-terminus AYJ59_10230 PF01820 D-ala D-ala ligase N-terminus AYJ59_10235 PF08245 Mur ligase middle domain AYJ59_10235 PF02875 Mur ligase family, glutamate ligase domain AYJ59_10235 PF01225 Mur ligase family, catalytic domain AYJ59_10245 PF00266 Aminotransferase class-V AYJ59_10250 PF01458 Uncharacterized protein family (UPF0051) AYJ59_10255 PF00005 ABC transporter AYJ59_10260 PF01458 Uncharacterized protein family (UPF0051) AYJ59_10270 PF01297 Zinc-uptake complex component A periplasmic AYJ59_10275 PF00005 ABC transporter AYJ59_10280 PF00950 ABC 3 transport family AYJ59_10285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_10285 PF00672 HAMP domain AYJ59_10285 PF02203 Tar ligand binding domain homologue AYJ59_10290 PF00186 Dihydrofolate reductase AYJ59_10295 PF00303 Thymidylate synthase AYJ59_10300 PF01790 Prolipoprotein diacylglyceryl transferase AYJ59_10305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_10305 PF00672 HAMP domain AYJ59_10305 PF02743 Cache domain AYJ59_10315 PF04101 Glycosyltransferase family 28 C-terminal domain AYJ59_10315 PF03033 Glycosyltransferase family 28 N-terminal domain AYJ59_10320 PF01098 Cell cycle protein AYJ59_10325 PF08245 Mur ligase middle domain AYJ59_10325 PF02875 Mur ligase family, glutamate ligase domain AYJ59_10330 PF00953 Glycosyl transferase family 4 AYJ59_10335 PF02875 Mur ligase family, glutamate ligase domain AYJ59_10335 PF08245 Mur ligase middle domain AYJ59_10335 PF01225 Mur ligase family, catalytic domain AYJ59_10340 PF08245 Mur ligase middle domain AYJ59_10340 PF02875 Mur ligase family, glutamate ligase domain AYJ59_10340 PF01225 Mur ligase family, catalytic domain AYJ59_10345 PF00905 Penicillin binding protein transpeptidase domain AYJ59_10345 PF03717 Penicillin-binding Protein dimerisation domain AYJ59_10355 PF12327 FtsZ family, C-terminal domain AYJ59_10355 PF00091 Tubulin/FtsZ family, GTPase domain AYJ59_10360 PF01795 MraW methylase family AYJ59_10365 PF02381 MraZ protein, putative antitoxin-like AYJ59_10385 PF08447 PAS fold AYJ59_10385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_10385 PF13426 PAS domain AYJ59_10395 PF00270 DEAD/DEAH box helicase AYJ59_10395 PF04408 Helicase associated domain (HA2) AYJ59_10395 PF08482 ATP-dependent helicase C-terminal AYJ59_10395 PF00271 Helicase conserved C-terminal domain AYJ59_10400 PF08447 PAS fold AYJ59_10400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_10415 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_10415 PF07694 5TMR of 5TMR-LYT AYJ59_10430 PF00005 ABC transporter AYJ59_10435 PF13472 GDSL-like Lipase/Acylhydrolase family AYJ59_10460 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ59_10465 PF12849 PBP superfamily domain AYJ59_10470 PF01384 Phosphate transporter family AYJ59_10475 PF00989 PAS fold AYJ59_10475 PF11808 Phosphate regulon sensor protein PhoR AYJ59_10475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_10475 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_10480 PF00486 Transcriptional regulatory protein, C terminal AYJ59_10480 PF00072 Response regulator receiver domain AYJ59_10485 PF01895 PhoU domain AYJ59_10490 PF00005 ABC transporter AYJ59_10495 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_10505 PF03951 Glutamine synthetase, beta-Grasp domain AYJ59_10505 PF00120 Glutamine synthetase, catalytic domain AYJ59_10515 PF01063 Amino-transferase class IV AYJ59_10520 PF00202 Aminotransferase class-III AYJ59_10525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYJ59_10525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYJ59_10530 PF02132 RecR protein AYJ59_10530 PF13662 Toprim domain AYJ59_10535 PF02575 YbaB/EbfC DNA-binding family AYJ59_10540 PF12169 DNA polymerase III subunits gamma and tau domain III AYJ59_10540 PF12170 DNA polymerase III tau subunit V interacting with alpha AYJ59_10555 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_10565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_10585 PF13840 ACT domain AYJ59_10585 PF00696 Amino acid kinase family AYJ59_10590 PF06339 Ectoine synthase AYJ59_10595 PF00202 Aminotransferase class-III AYJ59_10600 PF00583 Acetyltransferase (GNAT) family AYJ59_10615 PF03449 Transcription elongation factor, N-terminal AYJ59_10615 PF01272 Transcription elongation factor, GreA/GreB, C-term AYJ59_10625 PF00343 Carbohydrate phosphorylase AYJ59_10630 PF00534 Glycosyl transferases group 1 AYJ59_10630 PF08323 Starch synthase catalytic domain AYJ59_10635 PF00128 Alpha amylase, catalytic domain AYJ59_10635 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AYJ59_10635 PF02806 Alpha amylase, C-terminal all-beta domain AYJ59_10640 PF02446 4-alpha-glucanotransferase AYJ59_10650 PF00483 Nucleotidyl transferase AYJ59_10655 PF02685 Glucokinase AYJ59_10660 PF13580 SIS domain AYJ59_10665 PF01467 Cytidylyltransferase-like AYJ59_10665 PF00294 pfkB family carbohydrate kinase AYJ59_10675 PF01380 SIS domain AYJ59_10675 PF00571 CBS domain AYJ59_10680 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYJ59_10690 PF06969 HemN C-terminal domain AYJ59_10690 PF04055 Radical SAM superfamily AYJ59_10695 PF10672 S-adenosylmethionine-dependent methyltransferase AYJ59_10695 PF01170 Putative RNA methylase family UPF0020 AYJ59_10695 PF02926 THUMP domain AYJ59_10700 PF13406 Transglycosylase SLT domain AYJ59_10705 PF01252 Signal peptidase (SPase) II AYJ59_10710 PF00133 tRNA synthetases class I (I, L, M and V) AYJ59_10710 PF08264 Anticodon-binding domain of tRNA AYJ59_10710 PF06827 Zinc finger found in FPG and IleRS AYJ59_10715 PF06574 FAD synthetase AYJ59_10715 PF01687 Riboflavin kinase AYJ59_10720 PF03023 Lipid II flippase MurJ AYJ59_10725 PF01649 Ribosomal protein S20 AYJ59_10750 PF02253 Phospholipase A1 AYJ59_10755 PF01734 Patatin-like phospholipase AYJ59_10770 PF02590 Predicted SPOUT methyltransferase AYJ59_10780 PF01467 Cytidylyltransferase-like AYJ59_10790 PF00171 Aldehyde dehydrogenase family AYJ59_10805 PF13603 Leucyl-tRNA synthetase, Domain 2 AYJ59_10805 PF08264 Anticodon-binding domain of tRNA AYJ59_10805 PF00133 tRNA synthetases class I (I, L, M and V) AYJ59_10815 PF00795 Carbon-nitrogen hydrolase AYJ59_10820 PF03471 Transporter associated domain AYJ59_10820 PF00571 CBS domain AYJ59_10825 PF02130 Uncharacterized protein family UPF0054 AYJ59_10830 PF02562 PhoH-like protein AYJ59_10835 PF00919 Uncharacterized protein family UPF0004 AYJ59_10835 PF04055 Radical SAM superfamily AYJ59_10835 PF01938 TRAM domain AYJ59_10840 PF00114 Pilin (bacterial filament) AYJ59_10840 PF07963 Prokaryotic N-terminal methylation motif AYJ59_10845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_10845 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_10845 PF00989 PAS fold AYJ59_10850 PF02954 Bacterial regulatory protein, Fis family AYJ59_10850 PF00072 Response regulator receiver domain AYJ59_10850 PF00158 Sigma-54 interaction domain AYJ59_10855 PF08334 Type II secretion system (T2SS), protein G AYJ59_10855 PF07963 Prokaryotic N-terminal methylation motif AYJ59_10880 PF00267 Gram-negative porin AYJ59_10885 PF00317 Ribonucleotide reductase, all-alpha domain AYJ59_10885 PF03477 ATP cone domain AYJ59_10885 PF02867 Ribonucleotide reductase, barrel domain AYJ59_10890 PF00380 Ribosomal protein S9/S16 AYJ59_10895 PF00572 Ribosomal protein L13 AYJ59_10915 PF00072 Response regulator receiver domain AYJ59_10915 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_10920 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYJ59_10920 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ59_10925 PF00873 AcrB/AcrD/AcrF family AYJ59_10930 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_10930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_10945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ59_10945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ59_10945 PF11890 Domain of unknown function (DUF3410) AYJ59_10950 PF03625 Domain of unknown function DUF302 AYJ59_10970 PF02683 Cytochrome C biogenesis protein transmembrane region AYJ59_10970 PF11412 Disulphide bond corrector protein DsbC AYJ59_10975 PF01220 Dehydroquinase class II AYJ59_10980 PF00364 Biotin-requiring enzyme AYJ59_10985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ59_10985 PF00289 Biotin carboxylase, N-terminal domain AYJ59_10985 PF02785 Biotin carboxylase C-terminal domain AYJ59_10995 PF01207 Dihydrouridine synthase (Dus) AYJ59_11000 PF02954 Bacterial regulatory protein, Fis family AYJ59_11005 PF01808 AICARFT/IMPCHase bienzyme AYJ59_11005 PF02142 MGS-like domain AYJ59_11010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AYJ59_11010 PF02843 Phosphoribosylglycinamide synthetase, C domain AYJ59_11010 PF02844 Phosphoribosylglycinamide synthetase, N domain AYJ59_11025 PF00092 von Willebrand factor type A domain AYJ59_11030 PF08406 CbbQ/NirQ/NorQ C-terminal AYJ59_11030 PF07728 AAA domain (dynein-related subfamily) AYJ59_11035 PF00101 Ribulose bisphosphate carboxylase, small chain AYJ59_11040 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AYJ59_11040 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AYJ59_11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_11045 PF03466 LysR substrate binding domain AYJ59_11050 PF03466 LysR substrate binding domain AYJ59_11050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ59_11055 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AYJ59_11055 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AYJ59_11060 PF08406 CbbQ/NirQ/NorQ C-terminal AYJ59_11060 PF07728 AAA domain (dynein-related subfamily) AYJ59_11065 PF00092 von Willebrand factor type A domain AYJ59_11075 PF00484 Carbonic anhydrase AYJ59_11090 PF10431 C-terminal, D2-small domain, of ClpB protein AYJ59_11090 PF02861 Clp amino terminal domain, pathogenicity island component AYJ59_11090 PF07724 AAA domain (Cdc48 subfamily) AYJ59_11090 PF00004 ATPase family associated with various cellular activities (AAA) AYJ59_11090 PF17871 AAA lid domain AYJ59_11095 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_11095 PF08448 PAS fold AYJ59_11105 PF01613 Flavin reductase like domain AYJ59_11115 PF00227 Proteasome subunit AYJ59_11120 PF00589 Phage integrase family AYJ59_11120 PF02899 Phage integrase, N-terminal SAM-like domain AYJ59_11125 PF08448 PAS fold AYJ59_11125 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_11135 PF01914 MarC family integral membrane protein AYJ59_11140 PF00563 EAL domain AYJ59_11140 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_11140 PF05231 MASE1 AYJ59_11140 PF08447 PAS fold AYJ59_11140 PF08448 PAS fold AYJ59_11140 PF13426 PAS domain AYJ59_11145 PF01381 Helix-turn-helix AYJ59_11145 PF00717 Peptidase S24-like AYJ59_11155 PF01678 Diaminopimelate epimerase AYJ59_11160 PF07724 AAA domain (Cdc48 subfamily) AYJ59_11160 PF00004 ATPase family associated with various cellular activities (AAA) AYJ59_11170 PF01209 ubiE/COQ5 methyltransferase family AYJ59_11180 PF03109 ABC1 family AYJ59_11185 PF00860 Permease family AYJ59_11215 PF00593 TonB dependent receptor AYJ59_11215 PF07715 TonB-dependent Receptor Plug Domain AYJ59_11235 PF07804 HipA-like C-terminal domain AYJ59_11265 PF02384 N-6 DNA Methylase AYJ59_11265 PF12161 HsdM N-terminal domain AYJ59_11270 PF02796 Helix-turn-helix domain of resolvase AYJ59_11270 PF00239 Resolvase, N terminal domain AYJ59_11305 PF01926 50S ribosome-binding GTPase AYJ59_11305 PF06071 Protein of unknown function (DUF933) AYJ59_11310 PF01195 Peptidyl-tRNA hydrolase AYJ59_11315 PF01386 Ribosomal L25p family AYJ59_11315 PF14693 Ribosomal protein TL5, C-terminal domain AYJ59_11320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYJ59_11320 PF14572 Phosphoribosyl synthetase-associated domain AYJ59_11335 PF01488 Shikimate / quinate 5-dehydrogenase AYJ59_11335 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AYJ59_11335 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AYJ59_11340 PF00472 RF-1 domain AYJ59_11340 PF03462 PCRF domain AYJ59_11345 PF17827 PrmC N-terminal domain AYJ59_11345 PF13847 Methyltransferase domain AYJ59_11350 PF00899 ThiF family AYJ59_11355 PF00691 OmpA family AYJ59_11355 PF13677 Membrane MotB of proton-channel complex MotA/MotB AYJ59_11360 PF01618 MotA/TolQ/ExbB proton channel family AYJ59_11365 PF03989 DNA gyrase C-terminal domain, beta-propeller AYJ59_11365 PF00521 DNA gyrase/topoisomerase IV, subunit A AYJ59_11370 PF00403 Heavy-metal-associated domain AYJ59_11390 PF08448 PAS fold AYJ59_11390 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_11395 PF00204 DNA gyrase B AYJ59_11395 PF00986 DNA gyrase B subunit, carboxyl terminus AYJ59_11395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_11395 PF01751 Toprim domain AYJ59_11400 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AYJ59_11400 PF01243 Pyridoxamine 5'-phosphate oxidase AYJ59_11405 PF03167 Uracil DNA glycosylase superfamily AYJ59_11420 PF01618 MotA/TolQ/ExbB proton channel family AYJ59_11435 PF05746 DALR anticodon binding domain AYJ59_11435 PF02092 Glycyl-tRNA synthetase beta subunit AYJ59_11440 PF02091 Glycyl-tRNA synthetase alpha subunit AYJ59_11445 PF01206 Sulfurtransferase TusA AYJ59_11450 PF04225 Opacity-associated protein A LysM-like domain AYJ59_11450 PF01551 Peptidase family M23 AYJ59_11455 PF03702 Anhydro-N-acetylmuramic acid kinase AYJ59_11460 PF00285 Citrate synthase, C-terminal domain AYJ59_11465 PF01521 Iron-sulphur cluster biosynthesis AYJ59_11470 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYJ59_11470 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYJ59_11475 PF00118 TCP-1/cpn60 chaperonin family AYJ59_11480 PF00166 Chaperonin 10 Kd subunit AYJ59_11485 PF01472 PUA domain AYJ59_11485 PF00696 Amino acid kinase family AYJ59_11490 PF01018 GTP1/OBG AYJ59_11490 PF01926 50S ribosome-binding GTPase AYJ59_11495 PF01016 Ribosomal L27 protein AYJ59_11500 PF00829 Ribosomal prokaryotic L21 protein AYJ59_11505 PF00348 Polyprenyl synthetase AYJ59_11545 PF02899 Phage integrase, N-terminal SAM-like domain AYJ59_11545 PF00589 Phage integrase family AYJ59_11550 PF00436 Single-strand binding protein family AYJ59_11555 PF07690 Major Facilitator Superfamily AYJ59_11565 PF17755 UvrA DNA-binding domain AYJ59_11565 PF17760 UvrA interaction domain AYJ59_11575 PF00899 ThiF family AYJ59_11585 PF01196 Ribosomal protein L17 AYJ59_11590 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYJ59_11590 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYJ59_11590 PF01000 RNA polymerase Rpb3/RpoA insert domain AYJ59_11595 PF01479 S4 domain AYJ59_11595 PF00163 Ribosomal protein S4/S9 N-terminal domain AYJ59_11600 PF00411 Ribosomal protein S11 AYJ59_11605 PF00416 Ribosomal protein S13/S18 AYJ59_11610 PF00344 SecY translocase AYJ59_11615 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AYJ59_11620 PF00327 Ribosomal protein L30p/L7e AYJ59_11625 PF00333 Ribosomal protein S5, N-terminal domain AYJ59_11625 PF03719 Ribosomal protein S5, C-terminal domain AYJ59_11630 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AYJ59_11635 PF00347 Ribosomal protein L6 AYJ59_11640 PF00410 Ribosomal protein S8 AYJ59_11645 PF00253 Ribosomal protein S14p/S29e AYJ59_11650 PF00281 Ribosomal protein L5 AYJ59_11650 PF00673 ribosomal L5P family C-terminus AYJ59_11655 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AYJ59_11655 PF00467 KOW motif AYJ59_11660 PF00238 Ribosomal protein L14p/L23e AYJ59_11665 PF00366 Ribosomal protein S17 AYJ59_11670 PF00831 Ribosomal L29 protein AYJ59_11675 PF00252 Ribosomal protein L16p/L10e AYJ59_11680 PF07650 KH domain AYJ59_11680 PF00189 Ribosomal protein S3, C-terminal domain AYJ59_11685 PF00237 Ribosomal protein L22p/L17e AYJ59_11690 PF00203 Ribosomal protein S19 AYJ59_11695 PF00181 Ribosomal Proteins L2, RNA binding domain AYJ59_11695 PF03947 Ribosomal Proteins L2, C-terminal domain AYJ59_11700 PF00276 Ribosomal protein L23 AYJ59_11705 PF00573 Ribosomal protein L4/L1 family AYJ59_11710 PF00297 Ribosomal protein L3 AYJ59_11715 PF00338 Ribosomal protein S10p/S20e AYJ59_11720 PF00009 Elongation factor Tu GTP binding domain AYJ59_11720 PF03144 Elongation factor Tu domain 2 AYJ59_11720 PF03143 Elongation factor Tu C-terminal domain AYJ59_11725 PF03144 Elongation factor Tu domain 2 AYJ59_11725 PF00679 Elongation factor G C-terminus AYJ59_11725 PF14492 Elongation Factor G, domain II AYJ59_11725 PF03764 Elongation factor G, domain IV AYJ59_11725 PF00009 Elongation factor Tu GTP binding domain AYJ59_11730 PF00177 Ribosomal protein S7p/S5e AYJ59_11735 PF00164 Ribosomal protein S12/S23 AYJ59_11740 PF04983 RNA polymerase Rpb1, domain 3 AYJ59_11740 PF00623 RNA polymerase Rpb1, domain 2 AYJ59_11740 PF04997 RNA polymerase Rpb1, domain 1 AYJ59_11740 PF05000 RNA polymerase Rpb1, domain 4 AYJ59_11740 PF04998 RNA polymerase Rpb1, domain 5 AYJ59_11745 PF04565 RNA polymerase Rpb2, domain 3 AYJ59_11745 PF04561 RNA polymerase Rpb2, domain 2 AYJ59_11745 PF10385 RNA polymerase beta subunit external 1 domain AYJ59_11745 PF04560 RNA polymerase Rpb2, domain 7 AYJ59_11745 PF04563 RNA polymerase beta subunit AYJ59_11745 PF00562 RNA polymerase Rpb2, domain 6 AYJ59_11750 PF00542 Ribosomal protein L7/L12 C-terminal domain AYJ59_11750 PF16320 Ribosomal protein L7/L12 dimerisation domain AYJ59_11755 PF00466 Ribosomal protein L10 AYJ59_11760 PF00687 Ribosomal protein L1p/L10e family AYJ59_11765 PF00298 Ribosomal protein L11, RNA binding domain AYJ59_11765 PF03946 Ribosomal protein L11, N-terminal domain AYJ59_11770 PF00467 KOW motif AYJ59_11770 PF02357 Transcription termination factor nusG AYJ59_11775 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AYJ59_11785 PF03144 Elongation factor Tu domain 2 AYJ59_11785 PF00009 Elongation factor Tu GTP binding domain AYJ59_11785 PF03143 Elongation factor Tu C-terminal domain AYJ59_11815 PF00849 RNA pseudouridylate synthase AYJ59_11820 PF00202 Aminotransferase class-III AYJ59_11830 PF02566 OsmC-like protein AYJ59_11835 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYJ59_11835 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYJ59_11840 PF17284 Spermidine synthase tetramerisation domain AYJ59_11845 PF02675 S-adenosylmethionine decarboxylase AYJ59_11850 PF00218 Indole-3-glycerol phosphate synthase AYJ59_11855 PF02885 Glycosyl transferase family, helical bundle domain AYJ59_11855 PF00591 Glycosyl transferase family, a/b domain AYJ59_11860 PF00117 Glutamine amidotransferase class-I AYJ59_11865 PF04715 Anthranilate synthase component I, N terminal region AYJ59_11865 PF00425 chorismate binding enzyme AYJ59_11870 PF13419 Haloacid dehalogenase-like hydrolase AYJ59_11875 PF00834 Ribulose-phosphate 3 epimerase family AYJ59_11885 PF01259 SAICAR synthetase AYJ59_11900 PF01116 Fructose-bisphosphate aldolase class-II AYJ59_11905 PF00224 Pyruvate kinase, barrel domain AYJ59_11905 PF02887 Pyruvate kinase, alpha/beta domain AYJ59_11910 PF00162 Phosphoglycerate kinase AYJ59_11915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYJ59_11915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYJ59_11920 PF02779 Transketolase, pyrimidine binding domain AYJ59_11920 PF00456 Transketolase, thiamine diphosphate binding domain AYJ59_11920 PF02780 Transketolase, C-terminal domain AYJ59_11930 PF00873 AcrB/AcrD/AcrF family AYJ59_11945 PF16916 Dimerisation domain of Zinc Transporter AYJ59_11945 PF01545 Cation efflux family AYJ59_11950 PF01966 HD domain AYJ59_11950 PF12627 Probable RNA and SrmB- binding site of polymerase A AYJ59_11950 PF01743 Poly A polymerase head domain AYJ59_11960 PF05166 YcgL domain AYJ59_11965 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYJ59_11965 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYJ59_11970 PF12729 Four helix bundle sensory module for signal transduction AYJ59_11970 PF00672 HAMP domain AYJ59_11970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ59_11995 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYJ59_11995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYJ59_12020 PF07995 Glucose / Sorbosone dehydrogenase AYJ59_12025 PF09335 SNARE associated Golgi protein AYJ59_12045 PF00171 Aldehyde dehydrogenase family AYJ59_12050 PF00557 Metallopeptidase family M24 AYJ59_12050 PF01321 Creatinase/Prolidase N-terminal domain AYJ59_12055 PF00202 Aminotransferase class-III AYJ59_12060 PF07687 Peptidase dimerisation domain AYJ59_12060 PF01546 Peptidase family M20/M25/M40 AYJ59_12070 PF01502 Phosphoribosyl-AMP cyclohydrolase AYJ59_12075 PF01142 tRNA pseudouridine synthase D (TruD) AYJ59_12090 PF05175 Methyltransferase small domain AYJ59_12095 PF13361 UvrD-like helicase C-terminal domain AYJ59_12095 PF00580 UvrD/REP helicase N-terminal domain AYJ59_12100 PF00465 Iron-containing alcohol dehydrogenase AYJ59_12105 PF00691 OmpA family AYJ59_12115 PF10442 FIST C domain AYJ59_12115 PF00563 EAL domain AYJ59_12115 PF08495 FIST N domain AYJ59_12115 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_12120 PF00005 ABC transporter AYJ59_12120 PF03412 Peptidase C39 family AYJ59_12120 PF00664 ABC transporter transmembrane region AYJ59_12130 PF00196 Bacterial regulatory proteins, luxR family AYJ59_12130 PF00072 Response regulator receiver domain AYJ59_12145 PF01078 Magnesium chelatase, subunit ChlI AYJ59_12145 PF13335 Magnesium chelatase, subunit ChlI C-terminal AYJ59_12155 PF00665 Integrase core domain AYJ59_12170 PF00145 C-5 cytosine-specific DNA methylase AYJ59_12205 PF04380 Membrane fusogenic activity AYJ59_12210 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_12210 PF00072 Response regulator receiver domain AYJ59_12220 PF00750 tRNA synthetases class I (R) AYJ59_12220 PF03485 Arginyl tRNA synthetase N terminal domain AYJ59_12220 PF05746 DALR anticodon binding domain AYJ59_12225 PF01751 Toprim domain AYJ59_12225 PF13368 Topoisomerase C-terminal repeat AYJ59_12225 PF01131 DNA topoisomerase AYJ59_12230 PF00072 Response regulator receiver domain AYJ59_12235 PF17782 DprA winged helix domain AYJ59_12235 PF02481 DNA recombination-mediator protein A AYJ59_12240 PF01327 Polypeptide deformylase AYJ59_12245 PF00551 Formyl transferase AYJ59_12245 PF02911 Formyl transferase, C-terminal domain AYJ59_12250 PF01189 16S rRNA methyltransferase RsmB/F AYJ59_12250 PF01029 NusB family AYJ59_12260 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_12260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_12260 PF00672 HAMP domain AYJ59_12260 PF00989 PAS fold AYJ59_12265 PF02954 Bacterial regulatory protein, Fis family AYJ59_12265 PF00072 Response regulator receiver domain AYJ59_12265 PF00158 Sigma-54 interaction domain AYJ59_12270 PF02254 TrkA-N domain AYJ59_12270 PF02080 TrkA-C domain AYJ59_12275 PF02386 Cation transport protein AYJ59_12300 PF03279 Bacterial lipid A biosynthesis acyltransferase AYJ59_12305 PF01171 PP-loop family AYJ59_12310 PF00563 EAL domain AYJ59_12310 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_12310 PF10442 FIST C domain AYJ59_12310 PF08495 FIST N domain AYJ59_12315 PF00127 Copper binding proteins, plastocyanin/azurin family AYJ59_12330 PF07715 TonB-dependent Receptor Plug Domain AYJ59_12330 PF00593 TonB dependent receptor AYJ59_12335 PF00528 Binding-protein-dependent transport system inner membrane component AYJ59_12340 PF00005 ABC transporter AYJ59_12350 PF00005 ABC transporter AYJ59_12355 PF01032 FecCD transport family AYJ59_12360 PF01497 Periplasmic binding protein AYJ59_12365 PF05171 Haemin-degrading HemS.ChuX domain AYJ59_12370 PF00593 TonB dependent receptor AYJ59_12370 PF07715 TonB-dependent Receptor Plug Domain AYJ59_12380 PF00210 Ferritin-like domain AYJ59_12400 PF01925 Sulfite exporter TauE/SafE AYJ59_12405 PF05958 tRNA (Uracil-5-)-methyltransferase AYJ59_12410 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_12410 PF00072 Response regulator receiver domain AYJ59_12415 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYJ59_12420 PF02574 Homocysteine S-methyltransferase AYJ59_12420 PF02607 B12 binding domain AYJ59_12420 PF02310 B12 binding domain AYJ59_12420 PF02965 Vitamin B12 dependent methionine synthase, activation domain AYJ59_12420 PF00809 Pterin binding enzyme AYJ59_12440 PF01769 Divalent cation transporter AYJ59_12440 PF03448 MgtE intracellular N domain AYJ59_12440 PF00571 CBS domain AYJ59_12460 PF01292 Prokaryotic cytochrome b561 AYJ59_12465 PF03352 Methyladenine glycosylase AYJ59_12485 PF00561 alpha/beta hydrolase fold AYJ59_12490 PF02580 D-Tyr-tRNA(Tyr) deacylase AYJ59_12495 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_12495 PF03707 Bacterial signalling protein N terminal repeat AYJ59_12495 PF00563 EAL domain AYJ59_12515 PF01967 MoaC family AYJ59_12520 PF03454 MoeA C-terminal region (domain IV) AYJ59_12520 PF03453 MoeA N-terminal region (domain I and II) AYJ59_12520 PF00994 Probable molybdopterin binding domain AYJ59_12525 PF02391 MoaE protein AYJ59_12530 PF02597 ThiS family AYJ59_12535 PF06463 Molybdenum Cofactor Synthesis C AYJ59_12535 PF04055 Radical SAM superfamily AYJ59_12555 PF00490 Delta-aminolevulinic acid dehydratase AYJ59_12560 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYJ59_12560 PF01488 Shikimate / quinate 5-dehydrogenase AYJ59_12560 PF08501 Shikimate dehydrogenase substrate binding domain AYJ59_12565 PF00990 Diguanylate cyclase, GGDEF domain AYJ59_12565 PF00563 EAL domain AYJ59_12565 PF03707 Bacterial signalling protein N terminal repeat AYJ59_12570 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ59_12580 PF13667 ThiC-associated domain AYJ59_12580 PF01964 Radical SAM ThiC family AYJ59_12585 PF01266 FAD dependent oxidoreductase AYJ59_12590 PF05690 Thiazole biosynthesis protein ThiG AYJ59_12590 PF02597 ThiS family AYJ59_12595 PF05690 Thiazole biosynthesis protein ThiG AYJ59_12600 PF02581 Thiamine monophosphate synthase AYJ59_12615 PF13344 Haloacid dehalogenase-like hydrolase AYJ59_12615 PF00293 NUDIX domain AYJ59_12635 PF07715 TonB-dependent Receptor Plug Domain AYJ59_12635 PF00593 TonB dependent receptor AYJ59_12650 PF01545 Cation efflux family AYJ59_12655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYJ59_12655 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ59_12660 PF08534 Redoxin AYJ59_12660 PF00462 Glutaredoxin AYJ59_12665 PF00691 OmpA family AYJ59_12685 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AYJ59_12685 PF00072 Response regulator receiver domain AYJ59_12685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ59_12685 PF00672 HAMP domain AYJ59_12685 PF01627 Hpt domain AYJ59_12685 PF00512 His Kinase A (phospho-acceptor) domain AYJ59_12705 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYJ59_12705 PF01266 FAD dependent oxidoreductase AYJ59_12715 PF00005 ABC transporter AYJ59_12720 PF00580 UvrD/REP helicase N-terminal domain AYJ59_12720 PF13361 UvrD-like helicase C-terminal domain AYJ59_12725 PF00085 Thioredoxin AYJ59_12730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ59_12730 PF07498 Rho termination factor, N-terminal domain AYJ59_12730 PF07497 Rho termination factor, RNA-binding domain AYJ59_12740 PF01197 Ribosomal protein L31 AYJ59_12750 PF01208 Uroporphyrinogen decarboxylase (URO-D) AYJ59_12760 PF00563 EAL domain AYJ59_12760 PF08668 HDOD domain AYJ59_12765 PF04362 Bacterial Fe(2+) trafficking AYJ59_12770 PF00730 HhH-GPD superfamily base excision DNA repair protein AYJ59_12770 PF00633 Helix-hairpin-helix motif AYJ59_12770 PF10576 Iron-sulfur binding domain of endonuclease III AYJ59_12770 PF14815 NUDIX domain AYJ59_12775 PF02390 Putative methyltransferase AYJ59_12785 PF04055 Radical SAM superfamily AYJ59_12785 PF06969 HemN C-terminal domain AYJ59_12790 PF01515 Phosphate acetyl/butaryl transferase AYJ59_12790 PF07085 DRTGG domain AYJ59_12795 PF00871 Acetokinase family AYJ59_12800 PF11742 Protein of unknown function (DUF3302) AYJ59_12805 PF00529 HlyD membrane-fusion protein of T1SS AYJ59_12805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ59_12840 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AYJ59_12840 PF03900 Porphobilinogen deaminase, C-terminal domain AYJ59_12850 PF14698 Argininosuccinate lyase C-terminal AYJ59_12850 PF00206 Lyase AYJ59_12855 PF00156 Phosphoribosyl transferase domain