locus-tag class description THII_0001 PF02861 Clp amino terminal domain, pathogenicity island component THII_0001 PF10431 C-terminal, D2-small domain, of ClpB protein THII_0001 PF17871 AAA lid domain THII_0001 PF07724 AAA domain (Cdc48 subfamily) THII_0001 PF00004 ATPase family associated with various cellular activities (AAA) THII_0012 PF00698 Acyl transferase domain THII_0012 PF08990 Erythronolide synthase docking THII_0012 PF16197 Ketoacyl-synthetase C-terminal extension THII_0012 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_0012 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_0012 PF08659 KR domain THII_0012 PF18369 Polyketide synthase dimerisation element domain THII_0012 PF00550 Phosphopantetheine attachment site THII_0012 PF00975 Thioesterase domain THII_0015 PF04754 Putative transposase, YhgA-like THII_0018 PF04389 Peptidase family M28 THII_0019 PF01066 CDP-alcohol phosphatidyltransferase THII_0026 PF13247 4Fe-4S dicluster domain THII_0027 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THII_0027 PF00384 Molybdopterin oxidoreductase THII_0027 PF01568 Molydopterin dinucleotide binding domain THII_0028 PF00535 Glycosyl transferase family 2 THII_0029 PF01409 tRNA synthetases class II core domain (F) THII_0029 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain THII_0031 PF02153 Prephenate dehydrogenase THII_0032 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THII_0034 PF02224 Cytidylate kinase THII_0035 PF00575 S1 RNA binding domain THII_0036 PF00216 Bacterial DNA-binding protein THII_0037 PF18073 Rubredoxin metal binding domain THII_0038 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family THII_0039 PF13419 Haloacid dehalogenase-like hydrolase THII_0041 PF07516 SecA Wing and Scaffold domain THII_0041 PF01043 SecA preprotein cross-linking domain THII_0041 PF02810 SEC-C motif THII_0041 PF07517 SecA DEAD-like domain THII_0047 PF00899 ThiF family THII_0048 PF01026 TatD related DNase THII_0049 PF00529 HlyD membrane-fusion protein of T1SS THII_0049 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THII_0050 PF08448 PAS fold THII_0050 PF00563 EAL domain THII_0050 PF00990 Diguanylate cyclase, GGDEF domain THII_0054 PF01370 NAD dependent epimerase/dehydratase family THII_0055 PF00534 Glycosyl transferases group 1 THII_0057 PF02325 YGGT family THII_0058 PF14748 Pyrroline-5-carboxylate reductase dimerisation THII_0058 PF03807 NADP oxidoreductase coenzyme F420-dependent THII_0061 PF00072 Response regulator receiver domain THII_0061 PF00486 Transcriptional regulatory protein, C terminal THII_0062 PF01734 Patatin-like phospholipase THII_0065 PF00085 Thioredoxin THII_0067 PF00929 Exonuclease THII_0068 PF01979 Amidohydrolase family THII_0070 PF00512 His Kinase A (phospho-acceptor) domain THII_0070 PF09308 LuxQ, periplasmic THII_0070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0070 PF00072 Response regulator receiver domain THII_0071 PF17287 POTRA domain THII_0071 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB THII_0071 PF08479 POTRA domain, ShlB-type THII_0075 PF08534 Redoxin THII_0076 PF01293 Phosphoenolpyruvate carboxykinase THII_0079 PF13358 DDE superfamily endonuclease THII_0090 PF01370 NAD dependent epimerase/dehydratase family THII_0091 PF01467 Cytidylyltransferase-like THII_0091 PF00294 pfkB family carbohydrate kinase THII_0093 PF06804 NlpB/DapX lipoprotein THII_0095 PF00701 Dihydrodipicolinate synthetase family THII_0101 PF03167 Uracil DNA glycosylase superfamily THII_0102 PF04055 Radical SAM superfamily THII_0102 PF06969 HemN C-terminal domain THII_0104 PF01063 Amino-transferase class IV THII_0106 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THII_0110 PF02630 SCO1/SenC THII_0118 PF01493 GXGXG motif THII_0118 PF00310 Glutamine amidotransferases class-II THII_0118 PF01645 Conserved region in glutamate synthase THII_0118 PF04898 Glutamate synthase central domain THII_0119 PF13847 Methyltransferase domain THII_0122 PF04235 Protein of unknown function (DUF418) THII_0124 PF02844 Phosphoribosylglycinamide synthetase, N domain THII_0124 PF02843 Phosphoribosylglycinamide synthetase, C domain THII_0124 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain THII_0125 PF02594 Uncharacterised ACR, YggU family COG1872 THII_0129 PF07726 ATPase family associated with various cellular activities (AAA) THII_0129 PF17863 AAA lid domain THII_0138 PF12704 MacB-like periplasmic core domain THII_0138 PF00005 ABC transporter THII_0138 PF02687 FtsX-like permease family THII_0139 PF02687 FtsX-like permease family THII_0139 PF12704 MacB-like periplasmic core domain THII_0142 PF01588 Putative tRNA binding domain THII_0142 PF09334 tRNA synthetases class I (M) THII_0143 PF09312 SurA N-terminal domain THII_0143 PF00639 PPIC-type PPIASE domain THII_0144 PF00216 Bacterial DNA-binding protein THII_0145 PF02190 ATP-dependent protease La (LON) substrate-binding domain THII_0145 PF05362 Lon protease (S16) C-terminal proteolytic domain THII_0145 PF00004 ATPase family associated with various cellular activities (AAA) THII_0146 PF10431 C-terminal, D2-small domain, of ClpB protein THII_0146 PF07724 AAA domain (Cdc48 subfamily) THII_0146 PF06689 ClpX C4-type zinc finger THII_0147 PF00574 Clp protease THII_0148 PF05697 Bacterial trigger factor protein (TF) THII_0148 PF05698 Bacterial trigger factor protein (TF) C-terminus THII_0148 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THII_0150 PF00037 4Fe-4S binding domain THII_0151 PF01467 Cytidylyltransferase-like THII_0152 PF00490 Delta-aminolevulinic acid dehydratase THII_0154 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain THII_0154 PF01588 Putative tRNA binding domain THII_0154 PF03147 Ferredoxin-fold anticodon binding domain THII_0154 PF03484 tRNA synthetase B5 domain THII_0154 PF03483 B3/4 domain THII_0155 PF00216 Bacterial DNA-binding protein THII_0157 PF01521 Iron-sulphur cluster biosynthesis THII_0163 PF01385 Probable transposase THII_0163 PF12323 Helix-turn-helix domain THII_0163 PF07282 Putative transposase DNA-binding domain THII_0176 PF13538 UvrD-like helicase C-terminal domain THII_0177 PF11741 AMIN domain THII_0177 PF01520 N-acetylmuramoyl-L-alanine amidase THII_0178 PF01145 SPFH domain / Band 7 family THII_0180 PF00085 Thioredoxin THII_0181 PF07498 Rho termination factor, N-terminal domain THII_0181 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THII_0181 PF07497 Rho termination factor, RNA-binding domain THII_0184 PF02685 Glucokinase THII_0185 PF00535 Glycosyl transferase family 2 THII_0186 PF05685 Putative restriction endonuclease THII_0189 PF00072 Response regulator receiver domain THII_0189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0189 PF00512 His Kinase A (phospho-acceptor) domain THII_0189 PF09308 LuxQ, periplasmic THII_0191 PF00708 Acylphosphatase THII_0192 PF01061 ABC-2 type transporter THII_0194 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase THII_0195 PF01799 [2Fe-2S] binding domain THII_0195 PF00111 2Fe-2S iron-sulfur cluster binding domain THII_0196 PF00696 Amino acid kinase family THII_0196 PF13840 ACT domain THII_0196 PF01842 ACT domain THII_0197 PF02599 Global regulator protein family THII_0199 PF03772 Competence protein THII_0199 PF00753 Metallo-beta-lactamase superfamily THII_0200 PF05175 Methyltransferase small domain THII_0200 PF17827 PrmC N-terminal domain THII_0201 PF01048 Phosphorylase superfamily THII_0204 PF08241 Methyltransferase domain THII_0209 PF01678 Diaminopimelate epimerase THII_0211 PF02754 Cysteine-rich domain THII_0213 PF14524 Wzt C-terminal domain THII_0213 PF00005 ABC transporter THII_0214 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain THII_0216 PF00317 Ribonucleotide reductase, all-alpha domain THII_0216 PF03477 ATP cone domain THII_0216 PF02867 Ribonucleotide reductase, barrel domain THII_0217 PF01039 Carboxyl transferase domain THII_0217 PF17848 Acetyl-coA carboxylase zinc finger domain THII_0223 PF00593 TonB dependent receptor THII_0223 PF07715 TonB-dependent Receptor Plug Domain THII_0230 PF00067 Cytochrome P450 THII_0231 PF01047 MarR family THII_0233 PF01266 FAD dependent oxidoreductase THII_0234 PF00202 Aminotransferase class-III THII_0242 PF00781 Diacylglycerol kinase catalytic domain THII_0243 PF01494 FAD binding domain THII_0246 PF07690 Major Facilitator Superfamily THII_0248 PF01192 RNA polymerase Rpb6 THII_0249 PF02824 TGS domain THII_0249 PF04607 Region found in RelA / SpoT proteins THII_0249 PF13291 ACT domain THII_0250 PF03695 Uncharacterised protein family (UPF0149) THII_0251 PF05195 Aminopeptidase P, N-terminal domain THII_0251 PF00557 Metallopeptidase family M24 THII_0256 PF11897 Protein of unknown function (DUF3417) THII_0256 PF00343 Carbohydrate phosphorylase THII_0257 PF03951 Glutamine synthetase, beta-Grasp domain THII_0257 PF00120 Glutamine synthetase, catalytic domain THII_0259 PF16916 Dimerisation domain of Zinc Transporter THII_0259 PF01545 Cation efflux family THII_0260 PF01345 Domain of unknown function DUF11 THII_0260 PF03504 Chlamydia cysteine-rich outer membrane protein 6 THII_0261 PF02590 Predicted SPOUT methyltransferase THII_0262 PF02545 Maf-like protein THII_0266 PF02806 Alpha amylase, C-terminal all-beta domain THII_0266 PF00128 Alpha amylase, catalytic domain THII_0267 PF00512 His Kinase A (phospho-acceptor) domain THII_0267 PF00072 Response regulator receiver domain THII_0267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0267 PF01627 Hpt domain THII_0268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0268 PF17149 Periplasmic sensor domain found in signal transduction proteins THII_0268 PF00672 HAMP domain THII_0268 PF00072 Response regulator receiver domain THII_0268 PF01627 Hpt domain THII_0268 PF00512 His Kinase A (phospho-acceptor) domain THII_0271 PF01568 Molydopterin dinucleotide binding domain THII_0271 PF00384 Molybdopterin oxidoreductase THII_0271 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THII_0279 PF05685 Putative restriction endonuclease THII_0285 PF16363 GDP-mannose 4,6 dehydratase THII_0286 PF01370 NAD dependent epimerase/dehydratase family THII_0287 PF01196 Ribosomal protein L17 THII_0288 PF01000 RNA polymerase Rpb3/RpoA insert domain THII_0288 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain THII_0288 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain THII_0289 PF00163 Ribosomal protein S4/S9 N-terminal domain THII_0289 PF01479 S4 domain THII_0290 PF00411 Ribosomal protein S11 THII_0291 PF00416 Ribosomal protein S13/S18 THII_0292 PF00344 SecY translocase THII_0293 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A THII_0294 PF00327 Ribosomal protein L30p/L7e THII_0295 PF00333 Ribosomal protein S5, N-terminal domain THII_0295 PF03719 Ribosomal protein S5, C-terminal domain THII_0296 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast THII_0297 PF00347 Ribosomal protein L6 THII_0298 PF00410 Ribosomal protein S8 THII_0299 PF00253 Ribosomal protein S14p/S29e THII_0300 PF00673 ribosomal L5P family C-terminus THII_0300 PF00281 Ribosomal protein L5 THII_0301 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 THII_0302 PF00238 Ribosomal protein L14p/L23e THII_0303 PF00366 Ribosomal protein S17 THII_0304 PF00831 Ribosomal L29 protein THII_0305 PF00252 Ribosomal protein L16p/L10e THII_0306 PF00189 Ribosomal protein S3, C-terminal domain THII_0306 PF07650 KH domain THII_0307 PF00237 Ribosomal protein L22p/L17e THII_0308 PF00203 Ribosomal protein S19 THII_0309 PF00181 Ribosomal Proteins L2, RNA binding domain THII_0309 PF03947 Ribosomal Proteins L2, C-terminal domain THII_0310 PF00276 Ribosomal protein L23 THII_0311 PF00573 Ribosomal protein L4/L1 family THII_0312 PF00297 Ribosomal protein L3 THII_0313 PF00338 Ribosomal protein S10p/S20e THII_0314 PF03144 Elongation factor Tu domain 2 THII_0314 PF00009 Elongation factor Tu GTP binding domain THII_0314 PF03143 Elongation factor Tu C-terminal domain THII_0315 PF03144 Elongation factor Tu domain 2 THII_0315 PF00679 Elongation factor G C-terminus THII_0315 PF14492 Elongation Factor G, domain II THII_0315 PF03764 Elongation factor G, domain IV THII_0315 PF00009 Elongation factor Tu GTP binding domain THII_0316 PF00177 Ribosomal protein S7p/S5e THII_0317 PF00164 Ribosomal protein S12/S23 THII_0322 PF00474 Sodium:solute symporter family THII_0324 PF01322 Cytochrome C' THII_0326 PF12146 Serine aminopeptidase, S33 THII_0328 PF03793 PASTA domain THII_0328 PF00069 Protein kinase domain THII_0330 PF04998 RNA polymerase Rpb1, domain 5 THII_0330 PF00623 RNA polymerase Rpb1, domain 2 THII_0330 PF04997 RNA polymerase Rpb1, domain 1 THII_0330 PF05000 RNA polymerase Rpb1, domain 4 THII_0330 PF04983 RNA polymerase Rpb1, domain 3 THII_0331 PF01627 Hpt domain THII_0331 PF00072 Response regulator receiver domain THII_0331 PF00512 His Kinase A (phospho-acceptor) domain THII_0331 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_0331 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0331 PF00672 HAMP domain THII_0334 PF00034 Cytochrome c THII_0335 PF00115 Cytochrome C and Quinol oxidase polypeptide I THII_0336 PF07728 AAA domain (dynein-related subfamily) THII_0336 PF08406 CbbQ/NirQ/NorQ C-terminal THII_0339 PF00092 von Willebrand factor type A domain THII_0347 PF00082 Subtilase family THII_0347 PF05922 Peptidase inhibitor I9 THII_0348 PF03969 AFG1-like ATPase THII_0349 PF00011 Hsp20/alpha crystallin family THII_0350 PF00512 His Kinase A (phospho-acceptor) domain THII_0350 PF18698 Histidine kinase sensor domain THII_0350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0350 PF00672 HAMP domain THII_0350 PF00989 PAS fold THII_0351 PF04371 Porphyromonas-type peptidyl-arginine deiminase THII_0353 PF00795 Carbon-nitrogen hydrolase THII_0354 PF00072 Response regulator receiver domain THII_0354 PF00990 Diguanylate cyclase, GGDEF domain THII_0355 PF01145 SPFH domain / Band 7 family THII_0355 PF15975 Flotillin THII_0356 PF07290 Protein of unknown function (DUF1449) THII_0359 PF02542 YgbB family THII_0360 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase THII_0361 PF04977 Septum formation initiator THII_0365 PF01634 ATP phosphoribosyltransferase THII_0366 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) THII_0367 PF00117 Glutamine amidotransferase class-I THII_0367 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain THII_0379 PF00365 Phosphofructokinase THII_0381 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THII_0382 PF01297 Zinc-uptake complex component A periplasmic THII_0383 PF00005 ABC transporter THII_0384 PF00950 ABC 3 transport family THII_0386 PF00689 Cation transporting ATPase, C-terminus THII_0386 PF00690 Cation transporter/ATPase, N-terminus THII_0388 PF02492 CobW/HypB/UreG, nucleotide-binding domain THII_0388 PF07683 Cobalamin synthesis protein cobW C-terminal domain THII_0392 PF02152 Dihydroneopterin aldolase THII_0393 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THII_0407 PF00270 DEAD/DEAH box helicase THII_0407 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold THII_0407 PF11898 Domain of unknown function (DUF3418) THII_0407 PF04408 Helicase associated domain (HA2) THII_0407 PF00271 Helicase conserved C-terminal domain THII_0410 PF01171 PP-loop family THII_0410 PF09179 TilS substrate binding domain THII_0410 PF11734 TilS substrate C-terminal domain THII_0411 PF00183 Hsp90 protein THII_0411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0414 PF02698 DUF218 domain THII_0416 PF04055 Radical SAM superfamily THII_0417 PF09285 Elongation factor P, C-terminal THII_0417 PF08207 Elongation factor P (EF-P) KOW-like domain THII_0417 PF01132 Elongation factor P (EF-P) OB domain THII_0418 PF03588 Leucyl/phenylalanyl-tRNA protein transferase THII_0419 PF04376 Arginine-tRNA-protein transferase, N terminus THII_0419 PF04377 Arginine-tRNA-protein transferase, C terminus THII_0420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain THII_0420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THII_0421 PF01966 HD domain THII_0423 PF00437 Type II/IV secretion system protein THII_0425 PF00398 Ribosomal RNA adenine dimethylase THII_0426 PF00565 Staphylococcal nuclease homologue THII_0430 PF13085 2Fe-2S iron-sulfur cluster binding domain THII_0431 PF02910 Fumarate reductase flavoprotein C-term THII_0431 PF00890 FAD binding domain THII_0432 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit THII_0433 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit THII_0434 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase THII_0435 PF01263 Aldose 1-epimerase THII_0436 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain THII_0436 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain THII_0443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0443 PF00512 His Kinase A (phospho-acceptor) domain THII_0443 PF09308 LuxQ, periplasmic THII_0443 PF00072 Response regulator receiver domain THII_0444 PF11849 Domain of unknown function (DUF3369) THII_0445 PF04545 Sigma-70, region 4 THII_0445 PF00140 Sigma-70 factor, region 1.2 THII_0445 PF04542 Sigma-70 region 2 THII_0446 PF00535 Glycosyl transferase family 2 THII_0448 PF01740 STAS domain THII_0448 PF00916 Sulfate permease family THII_0449 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_0449 PF00672 HAMP domain THII_0461 PF04199 Putative cyclase THII_0463 PF03949 Malic enzyme, NAD binding domain THII_0463 PF01515 Phosphate acetyl/butaryl transferase THII_0463 PF00390 Malic enzyme, N-terminal domain THII_0464 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THII_0469 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase THII_0470 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase THII_0472 PF01799 [2Fe-2S] binding domain THII_0472 PF00111 2Fe-2S iron-sulfur cluster binding domain THII_0474 PF01327 Polypeptide deformylase THII_0475 PF00551 Formyl transferase THII_0475 PF02911 Formyl transferase, C-terminal domain THII_0482 PF01139 tRNA-splicing ligase RtcB THII_0485 PF00005 ABC transporter THII_0487 PF00005 ABC transporter THII_0488 PF02687 FtsX-like permease family THII_0488 PF12704 MacB-like periplasmic core domain THII_0488 PF00005 ABC transporter THII_0491 PF02630 SCO1/SenC THII_0492 PF00158 Sigma-54 interaction domain THII_0492 PF02954 Bacterial regulatory protein, Fis family THII_0492 PF00072 Response regulator receiver domain THII_0496 PF01797 Transposase IS200 like THII_0500 PF00512 His Kinase A (phospho-acceptor) domain THII_0500 PF09308 LuxQ, periplasmic THII_0500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0500 PF00072 Response regulator receiver domain THII_0503 PF02424 ApbE family THII_0509 PF07669 Eco57I restriction-modification methylase THII_0512 PF01709 Transcriptional regulator THII_0513 PF02075 Crossover junction endodeoxyribonuclease RuvC THII_0514 PF01330 RuvA N terminal domain THII_0514 PF07499 RuvA, C-terminal domain THII_0515 PF00561 alpha/beta hydrolase fold THII_0517 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 THII_0518 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THII_0519 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit THII_0520 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THII_0527 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THII_0527 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THII_0527 PF10531 SLBB domain THII_0533 PF00463 Isocitrate lyase family THII_0534 PF01274 Malate synthase THII_0535 PF03979 Sigma-70 factor, region 1.1 THII_0535 PF04539 Sigma-70 region 3 THII_0535 PF04545 Sigma-70, region 4 THII_0535 PF04542 Sigma-70 region 2 THII_0535 PF00140 Sigma-70 factor, region 1.2 THII_0537 PF00266 Aminotransferase class-V THII_0540 PF00486 Transcriptional regulatory protein, C terminal THII_0540 PF00072 Response regulator receiver domain THII_0541 PF00989 PAS fold THII_0541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0541 PF00512 His Kinase A (phospho-acceptor) domain THII_0542 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_0543 PF04317 YcjX-like family, DUF463 THII_0544 PF05128 Domain of unknown function (DUF697) THII_0549 PF01339 CheB methylesterase THII_0549 PF00072 Response regulator receiver domain THII_0550 PF03705 CheR methyltransferase, all-alpha domain THII_0550 PF01739 CheR methyltransferase, SAM binding domain THII_0552 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_0552 PF00672 HAMP domain THII_0553 PF01584 CheW-like domain THII_0554 PF01627 Hpt domain THII_0554 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0554 PF01584 CheW-like domain THII_0554 PF09078 CheY binding THII_0554 PF02895 Signal transducing histidine kinase, homodimeric domain THII_0555 PF00072 Response regulator receiver domain THII_0558 PF00696 Amino acid kinase family THII_0559 PF03937 Flavinator of succinate dehydrogenase THII_0561 PF01541 GIY-YIG catalytic domain THII_0561 PF08459 UvrC Helix-hairpin-helix N-terminal THII_0561 PF02151 UvrB/uvrC motif THII_0562 PF01066 CDP-alcohol phosphatidyltransferase THII_0567 PF01867 CRISPR associated protein Cas1 THII_0568 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system THII_0571 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system THII_0572 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THII_0578 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_0578 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_0579 PF07977 FabA-like domain THII_0584 PF01625 Peptide methionine sulfoxide reductase THII_0586 PF02741 FTR, proximal lobe THII_0586 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase THII_0588 PF04069 Substrate binding domain of ABC-type glycine betaine transport system THII_0589 PF00263 Bacterial type II and III secretion system protein THII_0589 PF03958 Bacterial type II/III secretion system short domain THII_0592 PF00378 Enoyl-CoA hydratase/isomerase THII_0592 PF00551 Formyl transferase THII_0592 PF02911 Formyl transferase, C-terminal domain THII_0593 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ THII_0594 PF08245 Mur ligase middle domain THII_0594 PF02875 Mur ligase family, glutamate ligase domain THII_0595 PF00464 Serine hydroxymethyltransferase THII_0596 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THII_0596 PF01872 RibD C-terminal domain THII_0597 PF14667 Polysaccharide biosynthesis C-terminal domain THII_0603 PF03989 DNA gyrase C-terminal domain, beta-propeller THII_0603 PF00521 DNA gyrase/topoisomerase IV, subunit A THII_0604 PF00893 Small Multidrug Resistance protein THII_0605 PF02348 Cytidylyltransferase THII_0611 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THII_0611 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THII_0612 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THII_0612 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THII_0613 PF02635 DsrE/DsrF-like family THII_0614 PF02635 DsrE/DsrF-like family THII_0616 PF04358 DsrC like protein THII_0619 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_0619 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THII_0621 PF13247 4Fe-4S dicluster domain THII_0623 PF02885 Glycosyl transferase family, helical bundle domain THII_0623 PF00591 Glycosyl transferase family, a/b domain THII_0627 PF00873 AcrB/AcrD/AcrF family THII_0634 PF00580 UvrD/REP helicase N-terminal domain THII_0634 PF12705 PD-(D/E)XK nuclease superfamily THII_0634 PF13361 UvrD-like helicase C-terminal domain THII_0636 PF00512 His Kinase A (phospho-acceptor) domain THII_0636 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0636 PF00672 HAMP domain THII_0636 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_0636 PF01627 Hpt domain THII_0636 PF00072 Response regulator receiver domain THII_0637 PF13439 Glycosyltransferase Family 4 THII_0637 PF00534 Glycosyl transferases group 1 THII_0638 PF02350 UDP-N-acetylglucosamine 2-epimerase THII_0639 PF03808 Glycosyl transferase WecB/TagA/CpsF family THII_0640 PF06470 SMC proteins Flexible Hinge Domain THII_0640 PF02463 RecF/RecN/SMC N terminal domain THII_0641 PF04354 ZipA, C-terminal FtsZ-binding domain THII_0642 PF05711 Macrocin-O-methyltransferase (TylF) THII_0643 PF07504 Fungalysin/Thermolysin Propeptide Motif THII_0643 PF03413 Peptidase propeptide and YPEB domain THII_0643 PF01447 Thermolysin metallopeptidase, catalytic domain THII_0643 PF02868 Thermolysin metallopeptidase, alpha-helical domain THII_0643 PF04151 Bacterial pre-peptidase C-terminal domain THII_0644 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ THII_0646 PF01979 Amidohydrolase family THII_0647 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THII_0647 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THII_0648 PF00156 Phosphoribosyl transferase domain THII_0649 PF03652 Holliday junction resolvase THII_0650 PF02622 Uncharacterized ACR, COG1678 THII_0655 PF10119 Predicted methyltransferase regulatory domain THII_0655 PF13847 Methyltransferase domain THII_0657 PF03466 LysR substrate binding domain THII_0657 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THII_0658 PF00437 Type II/IV secretion system protein THII_0659 PF00437 Type II/IV secretion system protein THII_0660 PF00437 Type II/IV secretion system protein THII_0662 PF00005 ABC transporter THII_0663 PF02569 Pantoate-beta-alanine ligase THII_0667 PF00814 Glycoprotease family THII_0669 PF13419 Haloacid dehalogenase-like hydrolase THII_0673 PF03062 MBOAT, membrane-bound O-acyltransferase family THII_0674 PF00501 AMP-binding enzyme THII_0674 PF13193 AMP-binding enzyme C-terminal domain THII_0677 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THII_0677 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THII_0678 PF03597 Cytochrome oxidase maturation protein cbb3-type THII_0682 PF00528 Binding-protein-dependent transport system inner membrane component THII_0683 PF01790 Prolipoprotein diacylglyceryl transferase THII_0686 PF00072 Response regulator receiver domain THII_0686 PF04397 LytTr DNA-binding domain THII_0687 PF06580 Histidine kinase THII_0687 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0688 PF01841 Transglutaminase-like superfamily THII_0688 PF08379 Bacterial transglutaminase-like N-terminal region THII_0694 PF08245 Mur ligase middle domain THII_0694 PF02875 Mur ligase family, glutamate ligase domain THII_0694 PF01225 Mur ligase family, catalytic domain THII_0695 PF02441 Flavoprotein THII_0699 PF18073 Rubredoxin metal binding domain THII_0701 PF03379 CcmB protein THII_0703 PF03306 Alpha-acetolactate decarboxylase THII_0704 PF03306 Alpha-acetolactate decarboxylase THII_0706 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like THII_0707 PF03449 Transcription elongation factor, N-terminal THII_0707 PF01272 Transcription elongation factor, GreA/GreB, C-term THII_0708 PF02142 MGS-like domain THII_0708 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THII_0708 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain THII_0709 PF00117 Glutamine amidotransferase class-I THII_0709 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain THII_0712 PF00202 Aminotransferase class-III THII_0713 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain THII_0713 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain THII_0714 PF00480 ROK family THII_0715 PF00005 ABC transporter THII_0716 PF00535 Glycosyl transferase family 2 THII_0717 PF00535 Glycosyl transferase family 2 THII_0723 PF00303 Thymidylate synthase THII_0726 PF00202 Aminotransferase class-III THII_0727 PF02096 60Kd inner membrane protein THII_0727 PF14849 YidC periplasmic domain THII_0728 PF00468 Ribosomal protein L34 THII_0729 PF00712 DNA polymerase III beta subunit, N-terminal domain THII_0729 PF02767 DNA polymerase III beta subunit, central domain THII_0729 PF02768 DNA polymerase III beta subunit, C-terminal domain THII_0734 PF00535 Glycosyl transferase family 2 THII_0736 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THII_0737 PF01370 NAD dependent epimerase/dehydratase family THII_0738 PF00535 Glycosyl transferase family 2 THII_0739 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THII_0741 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THII_0743 PF02894 Oxidoreductase family, C-terminal alpha/beta domain THII_0743 PF01408 Oxidoreductase family, NAD-binding Rossmann fold THII_0744 PF00657 GDSL-like Lipase/Acylhydrolase THII_0748 PF16658 Class II release factor RF3, C-terminal domain THII_0748 PF00009 Elongation factor Tu GTP binding domain THII_0748 PF03144 Elongation factor Tu domain 2 THII_0750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0750 PF00072 Response regulator receiver domain THII_0750 PF00512 His Kinase A (phospho-acceptor) domain THII_0750 PF09308 LuxQ, periplasmic THII_0751 PF00672 HAMP domain THII_0751 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_0751 PF00072 Response regulator receiver domain THII_0751 PF00512 His Kinase A (phospho-acceptor) domain THII_0751 PF01627 Hpt domain THII_0751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0752 PF00206 Lyase THII_0752 PF14698 Argininosuccinate lyase C-terminal THII_0754 PF03030 Inorganic H+ pyrophosphatase THII_0760 PF00535 Glycosyl transferase family 2 THII_0762 PF00005 ABC transporter THII_0762 PF00664 ABC transporter transmembrane region THII_0764 PF06508 Queuosine biosynthesis protein QueC THII_0765 PF00691 OmpA family THII_0767 PF03739 Lipopolysaccharide export system permease LptF/LptG THII_0770 PF00485 Phosphoribulokinase / Uridine kinase family THII_0772 PF01841 Transglutaminase-like superfamily THII_0772 PF13559 Domain of unknown function (DUF4129) THII_0772 PF11992 Domain of unknown function (DUF3488) THII_0774 PF18415 Histidine kinase receptor ArcB trans-membrane domain THII_0774 PF01627 Hpt domain THII_0774 PF00989 PAS fold THII_0774 PF00072 Response regulator receiver domain THII_0774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0774 PF00512 His Kinase A (phospho-acceptor) domain THII_0775 PF00072 Response regulator receiver domain THII_0777 PF00990 Diguanylate cyclase, GGDEF domain THII_0777 PF00563 EAL domain THII_0777 PF03707 Bacterial signalling protein N terminal repeat THII_0778 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_0779 PF14759 Reductase C-terminal THII_0779 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_0780 PF00448 SRP54-type protein, GTPase domain THII_0780 PF02881 SRP54-type protein, helical bundle domain THII_0781 PF00005 ABC transporter THII_0782 PF18075 FtsX extracellular domain THII_0784 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain THII_0784 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THII_0785 PF02779 Transketolase, pyrimidine binding domain THII_0785 PF02780 Transketolase, C-terminal domain THII_0785 PF00456 Transketolase, thiamine diphosphate binding domain THII_0792 PF01381 Helix-turn-helix THII_0794 PF04166 Pyridoxal phosphate biosynthetic protein PdxA THII_0795 PF01018 GTP1/OBG THII_0795 PF01926 50S ribosome-binding GTPase THII_0795 PF04055 Radical SAM superfamily THII_0798 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THII_0798 PF13807 G-rich domain on putative tyrosine kinase THII_0798 PF02706 Chain length determinant protein THII_0799 PF02563 Polysaccharide biosynthesis/export protein THII_0799 PF10531 SLBB domain THII_0799 PF18412 Outer-membrane lipoprotein Wza C-terminal domain THII_0802 PF00072 Response regulator receiver domain THII_0802 PF00486 Transcriptional regulatory protein, C terminal THII_0803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0803 PF00989 PAS fold THII_0803 PF00512 His Kinase A (phospho-acceptor) domain THII_0805 PF00117 Glutamine amidotransferase class-I THII_0806 PF01494 FAD binding domain THII_0807 PF02811 PHP domain THII_0807 PF14579 Helix-hairpin-helix motif THII_0807 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THII_0807 PF07733 Bacterial DNA polymerase III alpha NTPase domain THII_0807 PF00929 Exonuclease THII_0808 PF00005 ABC transporter THII_0814 PF00293 NUDIX domain THII_0816 PF05114 Protein of unknown function (DUF692) THII_0821 PF04357 TamB, inner membrane protein subunit of TAM complex THII_0822 PF02397 Bacterial sugar transferase THII_0823 PF13393 Histidyl-tRNA synthetase THII_0824 PF02310 B12 binding domain THII_0824 PF02607 B12 binding domain THII_0824 PF02574 Homocysteine S-methyltransferase THII_0824 PF00809 Pterin binding enzyme THII_0824 PF02965 Vitamin B12 dependent methionine synthase, activation domain THII_0829 PF00535 Glycosyl transferase family 2 THII_0834 PF00375 Sodium:dicarboxylate symporter family THII_0835 PF00230 Major intrinsic protein THII_0837 PF00106 short chain dehydrogenase THII_0838 PF07879 PHB/PHA accumulation regulator DNA-binding domain THII_0838 PF05233 PHB accumulation regulatory domain THII_0839 PF02803 Thiolase, C-terminal domain THII_0839 PF00108 Thiolase, N-terminal domain THII_0841 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THII_0842 PF00271 Helicase conserved C-terminal domain THII_0842 PF12419 SNF2 Helicase protein THII_0842 PF00176 SNF2 family N-terminal domain THII_0845 PF03814 Potassium-transporting ATPase A subunit THII_0847 PF02669 K+-transporting ATPase, c chain THII_0850 PF04386 Stringent starvation protein B THII_0851 PF02167 Cytochrome C1 family THII_0852 PF00033 Cytochrome b/b6/petB THII_0852 PF00032 Cytochrome b(C-terminal)/b6/petD THII_0853 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal THII_0853 PF00355 Rieske [2Fe-2S] domain THII_0854 PF00263 Bacterial type II and III secretion system protein THII_0854 PF03958 Bacterial type II/III secretion system short domain THII_0856 PF08334 Type II secretion system (T2SS), protein G THII_0856 PF07963 Prokaryotic N-terminal methylation motif THII_0857 PF00114 Pilin (bacterial filament) THII_0857 PF07963 Prokaryotic N-terminal methylation motif THII_0858 PF07963 Prokaryotic N-terminal methylation motif THII_0863 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) THII_0864 PF01022 Bacterial regulatory protein, arsR family THII_0865 PF01758 Sodium Bile acid symporter family THII_0866 PF03773 Predicted permease THII_0868 PF01451 Low molecular weight phosphotyrosine protein phosphatase THII_0870 PF00692 dUTPase THII_0872 PF12894 Anaphase-promoting complex subunit 4 WD40 domain THII_0872 PF00400 WD domain, G-beta repeat THII_0875 PF05175 Methyltransferase small domain THII_0877 PF03707 Bacterial signalling protein N terminal repeat THII_0877 PF00990 Diguanylate cyclase, GGDEF domain THII_0877 PF00563 EAL domain THII_0878 PF00486 Transcriptional regulatory protein, C terminal THII_0878 PF00072 Response regulator receiver domain THII_0881 PF02016 LD-carboxypeptidase N-terminal domain THII_0881 PF17676 LD-carboxypeptidase C-terminal domain THII_0882 PF00892 EamA-like transporter family THII_0884 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain THII_0884 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain THII_0886 PF03737 Aldolase/RraA THII_0891 PF00749 tRNA synthetases class I (E and Q), catalytic domain THII_0902 PF00873 AcrB/AcrD/AcrF family THII_0903 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family THII_0906 PF00004 ATPase family associated with various cellular activities (AAA) THII_0914 PF00361 Proton-conducting membrane transporter THII_0915 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit THII_0919 PF00990 Diguanylate cyclase, GGDEF domain THII_0919 PF00072 Response regulator receiver domain THII_0920 PF06968 Biotin and Thiamin Synthesis associated domain THII_0920 PF04055 Radical SAM superfamily THII_0921 PF00672 HAMP domain THII_0921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0921 PF00512 His Kinase A (phospho-acceptor) domain THII_0921 PF01627 Hpt domain THII_0921 PF00072 Response regulator receiver domain THII_0921 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_0927 PF16347 Domain of unknown function (DUF4976) THII_0927 PF00884 Sulfatase THII_0928 PF04002 RadC-like JAB domain THII_0929 PF02441 Flavoprotein THII_0929 PF04127 DNA / pantothenate metabolism flavoprotein THII_0936 PF00293 NUDIX domain THII_0937 PF01627 Hpt domain THII_0937 PF00072 Response regulator receiver domain THII_0937 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_0937 PF00512 His Kinase A (phospho-acceptor) domain THII_0937 PF00672 HAMP domain THII_0937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0938 PF13847 Methyltransferase domain THII_0938 PF10119 Predicted methyltransferase regulatory domain THII_0939 PF02666 Phosphatidylserine decarboxylase THII_0940 PF01464 Transglycosylase SLT domain THII_0940 PF01476 LysM domain THII_0943 PF00072 Response regulator receiver domain THII_0943 PF00196 Bacterial regulatory proteins, luxR family THII_0944 PF05231 MASE1 THII_0944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0944 PF07730 Histidine kinase THII_0947 PF00877 NlpC/P60 family THII_0947 PF08239 Bacterial SH3 domain THII_0947 PF01476 LysM domain THII_0948 PF06167 Glucose-regulated metallo-peptidase M90 THII_0949 PF18693 TRAM domain THII_0949 PF04055 Radical SAM superfamily THII_0949 PF00919 Uncharacterized protein family UPF0004 THII_0950 PF02203 Tar ligand binding domain homologue THII_0950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_0950 PF00672 HAMP domain THII_0951 PF01502 Phosphoribosyl-AMP cyclohydrolase THII_0952 PF08501 Shikimate dehydrogenase substrate binding domain THII_0952 PF01488 Shikimate / quinate 5-dehydrogenase THII_0952 PF18317 Shikimate 5'-dehydrogenase C-terminal domain THII_0961 PF02445 Quinolinate synthetase A protein THII_0962 PF00271 Helicase conserved C-terminal domain THII_0962 PF17191 RecG wedge domain THII_0962 PF00270 DEAD/DEAH box helicase THII_0967 PF00072 Response regulator receiver domain THII_0967 PF00196 Bacterial regulatory proteins, luxR family THII_0968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_0968 PF00512 His Kinase A (phospho-acceptor) domain THII_0968 PF01627 Hpt domain THII_0968 PF00072 Response regulator receiver domain THII_0968 PF00672 HAMP domain THII_0968 PF17149 Periplasmic sensor domain found in signal transduction proteins THII_0971 PF07726 ATPase family associated with various cellular activities (AAA) THII_0971 PF17863 AAA lid domain THII_0972 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THII_0973 PF00849 RNA pseudouridylate synthase THII_0973 PF01479 S4 domain THII_0980 PF01702 Queuine tRNA-ribosyltransferase THII_0981 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THII_0982 PF10414 Sirohaem synthase dimerisation region THII_0982 PF14824 Sirohaem biosynthesis protein central THII_0982 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THII_0983 PF01206 Sulfurtransferase TusA THII_0984 PF13686 DsrE/DsrF/DrsH-like family THII_0985 PF01565 FAD binding domain THII_0999 PF04717 Type VI secretion system, phage-baseplate injector THII_1001 PF03400 IS1 transposase THII_1016 PF07724 AAA domain (Cdc48 subfamily) THII_1016 PF17871 AAA lid domain THII_1016 PF10431 C-terminal, D2-small domain, of ClpB protein THII_1016 PF00004 ATPase family associated with various cellular activities (AAA) THII_1019 PF00072 Response regulator receiver domain THII_1019 PF01627 Hpt domain THII_1019 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1019 PF00672 HAMP domain THII_1019 PF00512 His Kinase A (phospho-acceptor) domain THII_1019 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_1020 PF01627 Hpt domain THII_1020 PF00512 His Kinase A (phospho-acceptor) domain THII_1020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1020 PF00072 Response regulator receiver domain THII_1021 PF00512 His Kinase A (phospho-acceptor) domain THII_1021 PF08448 PAS fold THII_1021 PF00072 Response regulator receiver domain THII_1021 PF13426 PAS domain THII_1021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1025 PF16123 Hydroxyacylglutathione hydrolase C-terminus THII_1025 PF00753 Metallo-beta-lactamase superfamily THII_1027 PF04225 Opacity-associated protein A LysM-like domain THII_1027 PF01551 Peptidase family M23 THII_1029 PF00579 tRNA synthetases class I (W and Y) THII_1030 PF00694 Aconitase C-terminal domain THII_1031 PF00180 Isocitrate/isopropylmalate dehydrogenase THII_1032 PF02774 Semialdehyde dehydrogenase, dimerisation domain THII_1032 PF01118 Semialdehyde dehydrogenase, NAD binding domain THII_1034 PF01416 tRNA pseudouridine synthase THII_1036 PF01627 Hpt domain THII_1036 PF00512 His Kinase A (phospho-acceptor) domain THII_1036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1036 PF00072 Response regulator receiver domain THII_1036 PF00497 Bacterial extracellular solute-binding proteins, family 3 THII_1036 PF00989 PAS fold THII_1037 PF00072 Response regulator receiver domain THII_1037 PF00990 Diguanylate cyclase, GGDEF domain THII_1038 PF00731 AIR carboxylase THII_1039 PF02222 ATP-grasp domain THII_1039 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain THII_1040 PF04151 Bacterial pre-peptidase C-terminal domain THII_1040 PF02868 Thermolysin metallopeptidase, alpha-helical domain THII_1040 PF01447 Thermolysin metallopeptidase, catalytic domain THII_1040 PF03413 Peptidase propeptide and YPEB domain THII_1040 PF07504 Fungalysin/Thermolysin Propeptide Motif THII_1046 PF01661 Macro domain THII_1050 PF00501 AMP-binding enzyme THII_1050 PF00550 Phosphopantetheine attachment site THII_1050 PF00668 Condensation domain THII_1050 PF13193 AMP-binding enzyme C-terminal domain THII_1051 PF13649 Methyltransferase domain THII_1056 PF10609 NUBPL iron-transfer P-loop NTPase THII_1056 PF01883 Iron-sulfur cluster assembly protein THII_1057 PF14306 PUA-like domain THII_1057 PF01747 ATP-sulfurylase THII_1070 PF01209 ubiE/COQ5 methyltransferase family THII_1071 PF13439 Glycosyltransferase Family 4 THII_1071 PF00534 Glycosyl transferases group 1 THII_1083 PF01909 Nucleotidyltransferase domain THII_1084 PF08780 Nucleotidyltransferase substrate binding protein like THII_1091 PF00535 Glycosyl transferase family 2 THII_1100 PF13607 Succinyl-CoA ligase like flavodoxin domain THII_1100 PF00583 Acetyltransferase (GNAT) family THII_1100 PF13380 CoA binding domain THII_1103 PF01797 Transposase IS200 like THII_1106 PF00202 Aminotransferase class-III THII_1108 PF01223 DNA/RNA non-specific endonuclease THII_1110 PF02463 RecF/RecN/SMC N terminal domain THII_1112 PF00535 Glycosyl transferase family 2 THII_1118 PF01925 Sulfite exporter TauE/SafE THII_1121 PF00512 His Kinase A (phospho-acceptor) domain THII_1121 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1121 PF13188 PAS domain THII_1121 PF00072 Response regulator receiver domain THII_1121 PF08448 PAS fold THII_1122 PF00072 Response regulator receiver domain THII_1122 PF02954 Bacterial regulatory protein, Fis family THII_1122 PF00158 Sigma-54 interaction domain THII_1126 PF00092 von Willebrand factor type A domain THII_1130 PF00072 Response regulator receiver domain THII_1130 PF00990 Diguanylate cyclase, GGDEF domain THII_1131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1131 PF00989 PAS fold THII_1131 PF00512 His Kinase A (phospho-acceptor) domain THII_1133 PF00483 Nucleotidyl transferase THII_1134 PF07298 NnrU protein THII_1141 PF00535 Glycosyl transferase family 2 THII_1147 PF12323 Helix-turn-helix domain THII_1147 PF07282 Putative transposase DNA-binding domain THII_1147 PF01385 Probable transposase THII_1151 PF01769 Divalent cation transporter THII_1151 PF03448 MgtE intracellular N domain THII_1151 PF00571 CBS domain THII_1153 PF01928 CYTH domain THII_1154 PF01266 FAD dependent oxidoreductase THII_1158 PF01078 Magnesium chelatase, subunit ChlI THII_1158 PF13335 Magnesium chelatase, subunit ChlI C-terminal THII_1159 PF04380 Membrane fusogenic activity THII_1160 PF02677 Epoxyqueuosine reductase QueH THII_1161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1161 PF00512 His Kinase A (phospho-acceptor) domain THII_1161 PF00672 HAMP domain THII_1161 PF01627 Hpt domain THII_1161 PF00072 Response regulator receiver domain THII_1161 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_1164 PF02472 Biopolymer transport protein ExbD/TolR THII_1165 PF01618 MotA/TolQ/ExbB proton channel family THII_1168 PF07660 Secretin and TonB N terminus short domain THII_1168 PF07715 TonB-dependent Receptor Plug Domain THII_1168 PF00593 TonB dependent receptor THII_1173 PF14602 Hexapeptide repeat of succinyl-transferase THII_1173 PF00132 Bacterial transferase hexapeptide (six repeats) THII_1173 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal THII_1174 PF00155 Aminotransferase class I and II THII_1175 PF17384 RimP C-terminal SH3 domain THII_1175 PF02576 RimP N-terminal domain THII_1176 PF08529 NusA N-terminal domain THII_1176 PF13184 NusA-like KH domain THII_1177 PF11987 Translation-initiation factor 2 THII_1177 PF08364 Bacterial translation initiation factor IF-2 associated region THII_1177 PF04760 Translation initiation factor IF-2, N-terminal region THII_1177 PF00009 Elongation factor Tu GTP binding domain THII_1178 PF02033 Ribosome-binding factor A THII_1179 PF01509 TruB family pseudouridylate synthase (N terminal domain) THII_1179 PF16198 tRNA pseudouridylate synthase B C-terminal domain THII_1179 PF09157 Pseudouridine synthase II TruB, C-terminal THII_1180 PF00312 Ribosomal protein S15 THII_1181 PF00575 S1 RNA binding domain THII_1181 PF03725 3' exoribonuclease family, domain 2 THII_1181 PF01138 3' exoribonuclease family, domain 1 THII_1181 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain THII_1181 PF00013 KH domain THII_1189 PF08448 PAS fold THII_1189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1189 PF00072 Response regulator receiver domain THII_1189 PF13426 PAS domain THII_1189 PF00512 His Kinase A (phospho-acceptor) domain THII_1191 PF00672 HAMP domain THII_1191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1191 PF00512 His Kinase A (phospho-acceptor) domain THII_1191 PF01627 Hpt domain THII_1191 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_1191 PF00072 Response regulator receiver domain THII_1195 PF00953 Glycosyl transferase family 4 THII_1195 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 THII_1196 PF08245 Mur ligase middle domain THII_1196 PF02875 Mur ligase family, glutamate ligase domain THII_1196 PF01225 Mur ligase family, catalytic domain THII_1197 PF01225 Mur ligase family, catalytic domain THII_1197 PF08245 Mur ligase middle domain THII_1197 PF02875 Mur ligase family, glutamate ligase domain THII_1199 PF01795 MraW methylase family THII_1200 PF00795 Carbon-nitrogen hydrolase THII_1202 PF03781 Sulfatase-modifying factor enzyme 1 THII_1202 PF00069 Protein kinase domain THII_1204 PF00528 Binding-protein-dependent transport system inner membrane component THII_1205 PF03459 TOBE domain THII_1205 PF00005 ABC transporter THII_1208 PF07549 SecD/SecF GG Motif THII_1208 PF02355 Protein export membrane protein THII_1209 PF02355 Protein export membrane protein THII_1209 PF13721 SecD export protein N-terminal TM region THII_1209 PF07549 SecD/SecF GG Motif THII_1210 PF02699 Preprotein translocase subunit THII_1211 PF01197 Ribosomal protein L31 THII_1212 PF00291 Pyridoxal-phosphate dependent enzyme THII_1213 PF05685 Putative restriction endonuclease THII_1214 PF00986 DNA gyrase B subunit, carboxyl terminus THII_1214 PF18053 DNA gyrase B subunit insert domain THII_1214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1214 PF01751 Toprim domain THII_1214 PF00204 DNA gyrase B THII_1217 PF00270 DEAD/DEAH box helicase THII_1217 PF00271 Helicase conserved C-terminal domain THII_1217 PF09382 RQC domain THII_1217 PF16124 RecQ zinc-binding THII_1217 PF00570 HRDC domain THII_1218 PF04235 Protein of unknown function (DUF418) THII_1219 PF16886 ATPsynthase alpha/beta subunit N-term extension THII_1219 PF02874 ATP synthase alpha/beta family, beta-barrel domain THII_1219 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THII_1225 PF00535 Glycosyl transferase family 2 THII_1227 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase THII_1233 PF00561 alpha/beta hydrolase fold THII_1235 PF01915 Glycosyl hydrolase family 3 C-terminal domain THII_1235 PF00933 Glycosyl hydrolase family 3 N terminal domain THII_1238 PF01207 Dihydrouridine synthase (Dus) THII_1239 PF08032 RNA 2'-O ribose methyltransferase substrate binding THII_1239 PF00588 SpoU rRNA Methylase family THII_1240 PF09225 Restriction endonuclease PvuII THII_1241 PF01381 Helix-turn-helix THII_1242 PF01555 DNA methylase THII_1243 PF00072 Response regulator receiver domain THII_1243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1243 PF09308 LuxQ, periplasmic THII_1243 PF00512 His Kinase A (phospho-acceptor) domain THII_1245 PF02272 DHHA1 domain THII_1245 PF01368 DHH family THII_1245 PF17768 RecJ OB domain THII_1247 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THII_1249 PF00291 Pyridoxal-phosphate dependent enzyme THII_1249 PF00585 C-terminal regulatory domain of Threonine dehydratase THII_1250 PF14489 QueF-like protein THII_1251 PF02603 HPr Serine kinase N terminus THII_1251 PF07475 HPr Serine kinase C-terminal domain THII_1252 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 THII_1253 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein THII_1254 PF04963 Sigma-54 factor, core binding domain THII_1254 PF04552 Sigma-54, DNA binding domain THII_1254 PF00309 Sigma-54 factor, Activator interacting domain (AID) THII_1255 PF12399 Branched-chain amino acid ATP-binding cassette transporter THII_1255 PF00005 ABC transporter THII_1256 PF03968 OstA-like protein THII_1259 PF00571 CBS domain THII_1259 PF01380 SIS domain THII_1268 PF00152 tRNA synthetases class II (D, K and N) THII_1269 PF00814 Glycoprotease family THII_1270 PF01367 5'-3' exonuclease, C-terminal SAM fold THII_1270 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain THII_1270 PF00476 DNA polymerase family A THII_1270 PF01612 3'-5' exonuclease THII_1273 PF04321 RmlD substrate binding domain THII_1275 PF16363 GDP-mannose 4,6 dehydratase THII_1276 PF13580 SIS domain THII_1277 PF01551 Peptidase family M23 THII_1277 PF10145 Phage-related minor tail protein THII_1277 PF01464 Transglycosylase SLT domain THII_1278 PF01208 Uroporphyrinogen decarboxylase (URO-D) THII_1281 PF01515 Phosphate acetyl/butaryl transferase THII_1283 PF01584 CheW-like domain THII_1283 PF00072 Response regulator receiver domain THII_1283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1283 PF01627 Hpt domain THII_1285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_1285 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term THII_1286 PF01584 CheW-like domain THII_1287 PF00072 Response regulator receiver domain THII_1288 PF00072 Response regulator receiver domain THII_1296 PF00156 Phosphoribosyl transferase domain THII_1297 PF01053 Cys/Met metabolism PLP-dependent enzyme THII_1299 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus THII_1300 PF00773 RNB domain THII_1301 PF00672 HAMP domain THII_1301 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_1301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1301 PF00512 His Kinase A (phospho-acceptor) domain THII_1301 PF00072 Response regulator receiver domain THII_1301 PF01627 Hpt domain THII_1302 PF00994 Probable molybdopterin binding domain THII_1303 PF00970 Oxidoreductase FAD-binding domain THII_1303 PF00175 Oxidoreductase NAD-binding domain THII_1303 PF00111 2Fe-2S iron-sulfur cluster binding domain THII_1305 PF03739 Lipopolysaccharide export system permease LptF/LptG THII_1306 PF02789 Cytosol aminopeptidase family, N-terminal domain THII_1306 PF00883 Cytosol aminopeptidase family, catalytic domain THII_1310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THII_1310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THII_1310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THII_1310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THII_1311 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THII_1311 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THII_1311 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THII_1311 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THII_1313 PF12704 MacB-like periplasmic core domain THII_1313 PF02687 FtsX-like permease family THII_1314 PF00005 ABC transporter THII_1316 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_1317 PF01008 Initiation factor 2 subunit family THII_1319 PF04348 LppC putative lipoprotein THII_1320 PF02021 Uncharacterised protein family UPF0102 THII_1321 PF00005 ABC transporter THII_1324 PF01551 Peptidase family M23 THII_1324 PF10145 Phage-related minor tail protein THII_1324 PF01464 Transglycosylase SLT domain THII_1325 PF01435 Peptidase family M48 THII_1327 PF02706 Chain length determinant protein THII_1327 PF13807 G-rich domain on putative tyrosine kinase THII_1327 PF13614 AAA domain THII_1328 PF07690 Major Facilitator Superfamily THII_1329 PF00436 Single-strand binding protein family THII_1330 PF01725 Ham1 family THII_1331 PF00929 Exonuclease THII_1332 PF00293 NUDIX domain THII_1333 PF00977 Histidine biosynthesis protein THII_1334 PF00977 Histidine biosynthesis protein THII_1336 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase THII_1339 PF02416 mttA/Hcf106 family THII_1340 PF02416 mttA/Hcf106 family THII_1341 PF00902 Sec-independent protein translocase protein (TatC) THII_1345 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase THII_1346 PF00483 Nucleotidyl transferase THII_1347 PF16363 GDP-mannose 4,6 dehydratase THII_1352 PF00873 AcrB/AcrD/AcrF family THII_1364 PF00563 EAL domain THII_1364 PF03707 Bacterial signalling protein N terminal repeat THII_1364 PF00990 Diguanylate cyclase, GGDEF domain THII_1365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1365 PF00072 Response regulator receiver domain THII_1365 PF09308 LuxQ, periplasmic THII_1365 PF00512 His Kinase A (phospho-acceptor) domain THII_1366 PF00072 Response regulator receiver domain THII_1368 PF00348 Polyprenyl synthetase THII_1376 PF06628 Catalase-related immune-responsive THII_1376 PF00199 Catalase THII_1378 PF01252 Signal peptidase (SPase) II THII_1379 PF06827 Zinc finger found in FPG and IleRS THII_1379 PF00133 tRNA synthetases class I (I, L, M and V) THII_1379 PF08264 Anticodon-binding domain of tRNA THII_1380 PF07516 SecA Wing and Scaffold domain THII_1380 PF01043 SecA preprotein cross-linking domain THII_1380 PF07517 SecA DEAD-like domain THII_1380 PF02810 SEC-C motif THII_1381 PF01960 ArgJ family THII_1382 PF02581 Thiamine monophosphate synthase THII_1384 PF00535 Glycosyl transferase family 2 THII_1388 PF00581 Rhodanese-like domain THII_1388 PF00899 ThiF family THII_1390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THII_1392 PF00528 Binding-protein-dependent transport system inner membrane component THII_1393 PF00528 Binding-protein-dependent transport system inner membrane component THII_1393 PF12911 N-terminal TM domain of oligopeptide transport permease C THII_1395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1395 PF00512 His Kinase A (phospho-acceptor) domain THII_1395 PF01627 Hpt domain THII_1395 PF00072 Response regulator receiver domain THII_1396 PF00072 Response regulator receiver domain THII_1397 PF00334 Nucleoside diphosphate kinase THII_1398 PF04055 Radical SAM superfamily THII_1400 PF13464 Domain of unknown function (DUF4115) THII_1401 PF04551 GcpE protein THII_1404 PF01967 MoaC family THII_1406 PF00270 DEAD/DEAH box helicase THII_1406 PF00271 Helicase conserved C-terminal domain THII_1411 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THII_1411 PF01411 tRNA synthetases class II (A) THII_1411 PF02272 DHHA1 domain THII_1412 PF02631 RecX family THII_1413 PF00154 recA bacterial DNA recombination protein THII_1413 PF03161 LAGLIDADG DNA endonuclease family THII_1418 PF00403 Heavy-metal-associated domain THII_1420 PF00291 Pyridoxal-phosphate dependent enzyme THII_1424 PF01176 Translation initiation factor 1A / IF-1 THII_1425 PF01451 Low molecular weight phosphotyrosine protein phosphatase THII_1426 PF03966 Trm112p-like protein THII_1427 PF02606 Tetraacyldisaccharide-1-P 4'-kinase THII_1428 PF02472 Biopolymer transport protein ExbD/TolR THII_1429 PF01618 MotA/TolQ/ExbB proton channel family THII_1430 PF00586 AIR synthase related protein, N-terminal domain THII_1430 PF02769 AIR synthase related protein, C-terminal domain THII_1431 PF00999 Sodium/hydrogen exchanger family THII_1435 PF10119 Predicted methyltransferase regulatory domain THII_1435 PF13847 Methyltransferase domain THII_1438 PF02938 GAD domain THII_1438 PF00152 tRNA synthetases class II (D, K and N) THII_1438 PF01336 OB-fold nucleic acid binding domain THII_1441 PF00342 Phosphoglucose isomerase THII_1442 PF02446 4-alpha-glucanotransferase THII_1444 PF00483 Nucleotidyl transferase THII_1445 PF00171 Aldehyde dehydrogenase family THII_1454 PF03793 PASTA domain THII_1454 PF00069 Protein kinase domain THII_1455 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_1455 PF00672 HAMP domain THII_1457 PF00300 Histidine phosphatase superfamily (branch 1) THII_1458 PF03372 Endonuclease/Exonuclease/phosphatase family THII_1459 PF05193 Peptidase M16 inactive domain THII_1459 PF00675 Insulinase (Peptidase family M16) THII_1460 PF05193 Peptidase M16 inactive domain THII_1460 PF00675 Insulinase (Peptidase family M16) THII_1461 PF00156 Phosphoribosyl transferase domain THII_1463 PF12795 Mechanosensitive ion channel porin domain THII_1463 PF00924 Mechanosensitive ion channel THII_1463 PF12794 Mechanosensitive ion channel inner membrane domain 1 THII_1465 PF02779 Transketolase, pyrimidine binding domain THII_1465 PF13292 1-deoxy-D-xylulose-5-phosphate synthase THII_1465 PF02780 Transketolase, C-terminal domain THII_1466 PF02649 Type I GTP cyclohydrolase folE2 THII_1471 PF07963 Prokaryotic N-terminal methylation motif THII_1471 PF11612 Type II secretion system (T2SS), protein J THII_1472 PF00085 Thioredoxin THII_1473 PF04055 Radical SAM superfamily THII_1474 PF03099 Biotin/lipoate A/B protein ligase family THII_1475 PF03350 Uncharacterized protein family, UPF0114 THII_1483 PF00873 AcrB/AcrD/AcrF family THII_1487 PF02597 ThiS family THII_1487 PF05690 Thiazole biosynthesis protein ThiG THII_1488 PF00535 Glycosyl transferase family 2 THII_1489 PF00166 Chaperonin 10 Kd subunit THII_1490 PF00118 TCP-1/cpn60 chaperonin family THII_1491 PF01040 UbiA prenyltransferase family THII_1493 PF00462 Glutaredoxin THII_1494 PF01053 Cys/Met metabolism PLP-dependent enzyme THII_1495 PF02824 TGS domain THII_1495 PF04607 Region found in RelA / SpoT proteins THII_1495 PF13291 ACT domain THII_1500 PF03150 Di-haem cytochrome c peroxidase THII_1500 PF00034 Cytochrome c THII_1503 PF00005 ABC transporter THII_1503 PF00664 ABC transporter transmembrane region THII_1510 PF14403 Circularly permuted ATP-grasp type 2 THII_1512 PF07720 Tetratricopeptide repeat THII_1512 PF01435 Peptidase family M48 THII_1514 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1514 PF00512 His Kinase A (phospho-acceptor) domain THII_1514 PF01627 Hpt domain THII_1514 PF00672 HAMP domain THII_1514 PF00072 Response regulator receiver domain THII_1514 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_1517 PF11849 Domain of unknown function (DUF3369) THII_1521 PF00374 Nickel-dependent hydrogenase THII_1522 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THII_1523 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THII_1524 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THII_1524 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THII_1525 PF07676 WD40-like Beta Propeller Repeat THII_1525 PF04052 TolB amino-terminal domain THII_1528 PF02472 Biopolymer transport protein ExbD/TolR THII_1529 PF01618 MotA/TolQ/ExbB proton channel family THII_1530 PF03061 Thioesterase superfamily THII_1531 PF17864 RuvB AAA lid domain THII_1531 PF05496 Holliday junction DNA helicase RuvB P-loop domain THII_1531 PF05491 RuvB C-terminal winged helix domain THII_1532 PF00034 Cytochrome c THII_1533 PF01323 DSBA-like thioredoxin domain THII_1536 PF01042 Endoribonuclease L-PSP THII_1537 PF17191 RecG wedge domain THII_1537 PF00271 Helicase conserved C-terminal domain THII_1537 PF00270 DEAD/DEAH box helicase THII_1539 PF02397 Bacterial sugar transferase THII_1540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1540 PF00512 His Kinase A (phospho-acceptor) domain THII_1540 PF18415 Histidine kinase receptor ArcB trans-membrane domain THII_1540 PF01627 Hpt domain THII_1540 PF00072 Response regulator receiver domain THII_1540 PF00989 PAS fold THII_1541 PF01590 GAF domain THII_1541 PF00360 Phytochrome region THII_1541 PF00563 EAL domain THII_1541 PF00990 Diguanylate cyclase, GGDEF domain THII_1542 PF00474 Sodium:solute symporter family THII_1543 PF00849 RNA pseudouridylate synthase THII_1543 PF01479 S4 domain THII_1544 PF13525 Outer membrane lipoprotein THII_1546 PF01432 Peptidase family M3 THII_1547 PF00343 Carbohydrate phosphorylase THII_1548 PF00361 Proton-conducting membrane transporter THII_1549 PF00146 NADH dehydrogenase THII_1554 PF00501 AMP-binding enzyme THII_1554 PF13193 AMP-binding enzyme C-terminal domain THII_1554 PF16177 Acetyl-coenzyme A synthetase N-terminus THII_1562 PF02548 Ketopantoate hydroxymethyltransferase THII_1563 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THII_1564 PF01743 Poly A polymerase head domain THII_1564 PF12627 Probable RNA and SrmB- binding site of polymerase A THII_1564 PF12626 Polymerase A arginine-rich C-terminus THII_1565 PF00830 Ribosomal L28 family THII_1566 PF00132 Bacterial transferase hexapeptide (six repeats) THII_1567 PF02634 FdhD/NarQ family THII_1568 PF04055 Radical SAM superfamily THII_1568 PF06463 Molybdenum Cofactor Synthesis C THII_1569 PF13847 Methyltransferase domain THII_1569 PF10119 Predicted methyltransferase regulatory domain THII_1570 PF00486 Transcriptional regulatory protein, C terminal THII_1570 PF00072 Response regulator receiver domain THII_1571 PF13492 GAF domain THII_1571 PF13493 Domain of unknown function (DUF4118) THII_1571 PF00512 His Kinase A (phospho-acceptor) domain THII_1571 PF02702 Osmosensitive K+ channel His kinase sensor domain THII_1571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1575 PF12627 Probable RNA and SrmB- binding site of polymerase A THII_1575 PF01966 HD domain THII_1575 PF01743 Poly A polymerase head domain THII_1576 PF01370 NAD dependent epimerase/dehydratase family THII_1576 PF08338 Domain of unknown function (DUF1731) THII_1583 PF00672 HAMP domain THII_1583 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_1585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1585 PF00497 Bacterial extracellular solute-binding proteins, family 3 THII_1585 PF00512 His Kinase A (phospho-acceptor) domain THII_1592 PF03109 ABC1 family THII_1595 PF01209 ubiE/COQ5 methyltransferase family THII_1597 PF10431 C-terminal, D2-small domain, of ClpB protein THII_1597 PF00004 ATPase family associated with various cellular activities (AAA) THII_1597 PF07724 AAA domain (Cdc48 subfamily) THII_1598 PF00227 Proteasome subunit THII_1599 PF01636 Phosphotransferase enzyme family THII_1600 PF03641 Possible lysine decarboxylase THII_1605 PF03412 Peptidase C39 family THII_1605 PF00664 ABC transporter transmembrane region THII_1605 PF00005 ABC transporter THII_1615 PF00115 Cytochrome C and Quinol oxidase polypeptide I THII_1618 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THII_1618 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP THII_1619 PF02554 Carbon starvation protein CstA THII_1619 PF13722 5TM C-terminal transporter carbon starvation CstA THII_1624 PF00072 Response regulator receiver domain THII_1624 PF00486 Transcriptional regulatory protein, C terminal THII_1625 PF00512 His Kinase A (phospho-acceptor) domain THII_1625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1625 PF00672 HAMP domain THII_1629 PF00691 OmpA family THII_1629 PF01389 OmpA-like transmembrane domain THII_1631 PF00072 Response regulator receiver domain THII_1631 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1631 PF00512 His Kinase A (phospho-acceptor) domain THII_1631 PF09308 LuxQ, periplasmic THII_1632 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_1632 PF00072 Response regulator receiver domain THII_1633 PF02142 MGS-like domain THII_1633 PF01808 AICARFT/IMPCHase bienzyme THII_1634 PF00459 Inositol monophosphatase family THII_1635 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THII_1646 PF01565 FAD binding domain THII_1646 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THII_1649 PF16363 GDP-mannose 4,6 dehydratase THII_1658 PF00535 Glycosyl transferase family 2 THII_1663 PF00005 ABC transporter THII_1664 PF00005 ABC transporter THII_1664 PF00664 ABC transporter transmembrane region THII_1673 PF01568 Molydopterin dinucleotide binding domain THII_1673 PF00384 Molybdopterin oxidoreductase THII_1674 PF13247 4Fe-4S dicluster domain THII_1685 PF01578 Cytochrome C assembly protein THII_1688 PF05193 Peptidase M16 inactive domain THII_1688 PF00675 Insulinase (Peptidase family M16) THII_1688 PF08367 Peptidase M16C associated THII_1691 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding THII_1691 PF10518 TAT (twin-arginine translocation) pathway signal sequence THII_1691 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_1694 PF03264 NapC/NirT cytochrome c family, N-terminal region THII_1695 PF00483 Nucleotidyl transferase THII_1696 PF16363 GDP-mannose 4,6 dehydratase THII_1697 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THII_1698 PF01370 NAD dependent epimerase/dehydratase family THII_1699 PF16363 GDP-mannose 4,6 dehydratase THII_1701 PF00535 Glycosyl transferase family 2 THII_1707 PF00535 Glycosyl transferase family 2 THII_1708 PF13439 Glycosyltransferase Family 4 THII_1708 PF00534 Glycosyl transferases group 1 THII_1709 PF13439 Glycosyltransferase Family 4 THII_1709 PF00534 Glycosyl transferases group 1 THII_1710 PF12464 Maltose acetyltransferase THII_1710 PF00132 Bacterial transferase hexapeptide (six repeats) THII_1714 PF00534 Glycosyl transferases group 1 THII_1714 PF13579 Glycosyl transferase 4-like domain THII_1715 PF01975 Survival protein SurE THII_1716 PF13183 4Fe-4S dicluster domain THII_1716 PF02754 Cysteine-rich domain THII_1717 PF00107 Zinc-binding dehydrogenase THII_1717 PF08240 Alcohol dehydrogenase GroES-like domain THII_1718 PF02834 LigT like Phosphoesterase THII_1720 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_1721 PF00482 Type II secretion system (T2SS), protein F THII_1727 PF13087 AAA domain THII_1727 PF13195 Protein of unknown function (DUF4011) THII_1727 PF13086 AAA domain THII_1727 PF13086 AAA domain THII_1727 PF13195 Protein of unknown function (DUF4011) THII_1727 PF13087 AAA domain THII_1734 PF02684 Lipid-A-disaccharide synthetase THII_1735 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 THII_1735 PF00132 Bacterial transferase hexapeptide (six repeats) THII_1736 PF07977 FabA-like domain THII_1737 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD THII_1737 PF00132 Bacterial transferase hexapeptide (six repeats) THII_1739 PF07244 Surface antigen variable number repeat THII_1739 PF01103 Surface antigen THII_1740 PF17820 PDZ domain THII_1740 PF02163 Peptidase family M50 THII_1741 PF13288 DXP reductoisomerase C-terminal domain THII_1741 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase THII_1741 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain THII_1743 PF01255 Putative undecaprenyl diphosphate synthase THII_1744 PF01765 Ribosome recycling factor THII_1745 PF00696 Amino acid kinase family THII_1746 PF00889 Elongation factor TS THII_1747 PF00318 Ribosomal protein S2 THII_1748 PF00557 Metallopeptidase family M24 THII_1749 PF00899 ThiF family THII_1750 PF02597 ThiS family THII_1751 PF02391 MoaE protein THII_1754 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain THII_1754 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain THII_1754 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain THII_1755 PF00899 ThiF family THII_1756 PF03922 OmpW family THII_1764 PF02463 RecF/RecN/SMC N terminal domain THII_1765 PF12804 MobA-like NTP transferase domain THII_1765 PF00132 Bacterial transferase hexapeptide (six repeats) THII_1770 PF00325 Bacterial regulatory proteins, crp family THII_1770 PF00027 Cyclic nucleotide-binding domain THII_1772 PF03023 Lipid II flippase MurJ THII_1773 PF06574 FAD synthetase THII_1773 PF01687 Riboflavin kinase THII_1776 PF00360 Phytochrome region THII_1776 PF00990 Diguanylate cyclase, GGDEF domain THII_1776 PF01590 GAF domain THII_1776 PF00563 EAL domain THII_1777 PF00989 PAS fold THII_1777 PF00512 His Kinase A (phospho-acceptor) domain THII_1777 PF18698 Histidine kinase sensor domain THII_1777 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1777 PF00672 HAMP domain THII_1778 PF01568 Molydopterin dinucleotide binding domain THII_1778 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THII_1778 PF04324 BFD-like [2Fe-2S] binding domain THII_1778 PF00384 Molybdopterin oxidoreductase THII_1781 PF00355 Rieske [2Fe-2S] domain THII_1782 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_1782 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain THII_1782 PF01077 Nitrite and sulphite reductase 4Fe-4S domain THII_1782 PF04324 BFD-like [2Fe-2S] binding domain THII_1782 PF18267 Rubredoxin NAD+ reductase C-terminal domain THII_1783 PF07690 Major Facilitator Superfamily THII_1784 PF00005 ABC transporter THII_1785 PF08376 Nitrate and nitrite sensing THII_1785 PF03861 ANTAR domain THII_1789 PF00005 ABC transporter THII_1790 PF01032 FecCD transport family THII_1794 PF00795 Carbon-nitrogen hydrolase THII_1796 PF03471 Transporter associated domain THII_1796 PF00571 CBS domain THII_1797 PF02130 Uncharacterized protein family UPF0054 THII_1798 PF02562 PhoH-like protein THII_1799 PF04055 Radical SAM superfamily THII_1799 PF00919 Uncharacterized protein family UPF0004 THII_1799 PF01938 TRAM domain THII_1800 PF12849 PBP superfamily domain THII_1801 PF01171 PP-loop family THII_1802 PF00581 Rhodanese-like domain THII_1804 PF18074 Primosomal protein N C-terminal domain THII_1804 PF18319 PriA DNA helicase Cys-rich region (CRR) domain THII_1804 PF00270 DEAD/DEAH box helicase THII_1804 PF00271 Helicase conserved C-terminal domain THII_1804 PF17764 3′ DNA-binding domain (3′BD) THII_1806 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family THII_1807 PF00148 Nitrogenase component 1 type Oxidoreductase THII_1808 PF00148 Nitrogenase component 1 type Oxidoreductase THII_1808 PF11844 Domain of unknown function (DUF3364) THII_1809 PF06988 NifT/FixU protein THII_1810 PF00037 4Fe-4S binding domain THII_1811 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal THII_1811 PF02579 Dinitrogenase iron-molybdenum cofactor THII_1813 PF00148 Nitrogenase component 1 type Oxidoreductase THII_1814 PF00148 Nitrogenase component 1 type Oxidoreductase THII_1815 PF02579 Dinitrogenase iron-molybdenum cofactor THII_1817 PF03270 Protein of unknown function, DUF269 THII_1823 PF00330 Aconitase family (aconitate hydratase) THII_1825 PF01351 Ribonuclease HII THII_1828 PF05164 Cell division protein ZapA THII_1829 PF00437 Type II/IV secretion system protein THII_1831 PF01797 Transposase IS200 like THII_1832 PF00155 Aminotransferase class I and II THII_1834 PF00204 DNA gyrase B THII_1834 PF00986 DNA gyrase B subunit, carboxyl terminus THII_1834 PF01751 Toprim domain THII_1834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1835 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THII_1836 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system THII_1837 PF02547 Queuosine biosynthesis protein THII_1846 PF00999 Sodium/hydrogen exchanger family THII_1847 PF00072 Response regulator receiver domain THII_1847 PF00990 Diguanylate cyclase, GGDEF domain THII_1848 PF04358 DsrC like protein THII_1849 PF00072 Response regulator receiver domain THII_1851 PF04390 Lipopolysaccharide-assembly THII_1852 PF09334 tRNA synthetases class I (M) THII_1852 PF13603 Leucyl-tRNA synthetase, Domain 2 THII_1852 PF00133 tRNA synthetases class I (I, L, M and V) THII_1852 PF08264 Anticodon-binding domain of tRNA THII_1854 PF10672 S-adenosylmethionine-dependent methyltransferase THII_1854 PF17785 PUA-like domain THII_1862 PF00330 Aconitase family (aconitate hydratase) THII_1862 PF06434 Aconitate hydratase 2 N-terminus THII_1862 PF11791 Aconitate B N-terminal domain THII_1865 PF00082 Subtilase family THII_1870 PF03819 MazG nucleotide pyrophosphohydrolase domain THII_1873 PF00456 Transketolase, thiamine diphosphate binding domain THII_1874 PF02780 Transketolase, C-terminal domain THII_1874 PF02779 Transketolase, pyrimidine binding domain THII_1875 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THII_1876 PF00749 tRNA synthetases class I (E and Q), catalytic domain THII_1878 PF01103 Surface antigen THII_1878 PF07244 Surface antigen variable number repeat THII_1878 PF17243 POTRA domain TamA domain 1 THII_1880 PF02558 Ketopantoate reductase PanE/ApbA THII_1880 PF08546 Ketopantoate reductase PanE/ApbA C terminal THII_1881 PF01871 AMMECR1 THII_1882 PF01875 Memo-like protein THII_1884 PF00512 His Kinase A (phospho-acceptor) domain THII_1884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1884 PF00072 Response regulator receiver domain THII_1884 PF00497 Bacterial extracellular solute-binding proteins, family 3 THII_1887 PF03205 Molybdopterin guanine dinucleotide synthesis protein B THII_1888 PF12804 MobA-like NTP transferase domain THII_1889 PF00266 Aminotransferase class-V THII_1893 PF04542 Sigma-70 region 2 THII_1893 PF08281 Sigma-70, region 4 THII_1895 PF00578 AhpC/TSA family THII_1895 PF17991 Thioredoxin like C-terminal domain THII_1895 PF02683 Cytochrome C biogenesis protein transmembrane region THII_1896 PF04069 Substrate binding domain of ABC-type glycine betaine transport system THII_1897 PF00528 Binding-protein-dependent transport system inner membrane component THII_1898 PF00005 ABC transporter THII_1898 PF00571 CBS domain THII_1899 PF08241 Methyltransferase domain THII_1900 PF13649 Methyltransferase domain THII_1901 PF13649 Methyltransferase domain THII_1904 PF02926 THUMP domain THII_1904 PF10672 S-adenosylmethionine-dependent methyltransferase THII_1904 PF01170 Putative RNA methylase family UPF0020 THII_1905 PF01165 Ribosomal protein S21 THII_1907 PF10410 DnaB-helicase binding domain of primase THII_1907 PF01807 CHC2 zinc finger THII_1907 PF08275 DNA primase catalytic core, N-terminal domain THII_1907 PF08278 DNA primase DnaG DnaB-binding THII_1907 PF13662 Toprim domain THII_1908 PF03979 Sigma-70 factor, region 1.1 THII_1908 PF04542 Sigma-70 region 2 THII_1908 PF04546 Sigma-70, non-essential region THII_1908 PF04539 Sigma-70 region 3 THII_1908 PF04545 Sigma-70, region 4 THII_1908 PF00140 Sigma-70 factor, region 1.2 THII_1909 PF05173 Dihydrodipicolinate reductase, C-terminus THII_1909 PF01113 Dihydrodipicolinate reductase, N-terminus THII_1912 PF00535 Glycosyl transferase family 2 THII_1913 PF00563 EAL domain THII_1913 PF13188 PAS domain THII_1913 PF00990 Diguanylate cyclase, GGDEF domain THII_1913 PF03707 Bacterial signalling protein N terminal repeat THII_1914 PF00850 Histone deacetylase domain THII_1915 PF03441 FAD binding domain of DNA photolyase THII_1915 PF00875 DNA photolyase THII_1917 PF12848 ABC transporter THII_1917 PF00005 ABC transporter THII_1919 PF01813 ATP synthase subunit D THII_1920 PF00156 Phosphoribosyl transferase domain THII_1921 PF01578 Cytochrome C assembly protein THII_1923 PF00905 Penicillin binding protein transpeptidase domain THII_1923 PF00912 Transglycosylase THII_1923 PF14814 Bifunctional transglycosylase second domain THII_1924 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_1924 PF12729 Four helix bundle sensory module for signal transduction THII_1924 PF00672 HAMP domain THII_1926 PF01739 CheR methyltransferase, SAM binding domain THII_1928 PF07194 P2 response regulator binding domain THII_1928 PF01627 Hpt domain THII_1928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1928 PF02895 Signal transducing histidine kinase, homodimeric domain THII_1928 PF01584 CheW-like domain THII_1929 PF01339 CheB methylesterase THII_1929 PF00072 Response regulator receiver domain THII_1930 PF00072 Response regulator receiver domain THII_1930 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_1935 PF00535 Glycosyl transferase family 2 THII_1939 PF04255 Protein of unknown function (DUF433) THII_1943 PF01968 Hydantoinase/oxoprolinase THII_1943 PF05378 Hydantoinase/oxoprolinase N-terminal region THII_1949 PF00512 His Kinase A (phospho-acceptor) domain THII_1949 PF00072 Response regulator receiver domain THII_1949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1949 PF09308 LuxQ, periplasmic THII_1951 PF09308 LuxQ, periplasmic THII_1951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1951 PF00072 Response regulator receiver domain THII_1951 PF00512 His Kinase A (phospho-acceptor) domain THII_1952 PF02086 D12 class N6 adenine-specific DNA methyltransferase THII_1954 PF00072 Response regulator receiver domain THII_1954 PF00512 His Kinase A (phospho-acceptor) domain THII_1954 PF09308 LuxQ, periplasmic THII_1954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1956 PF00990 Diguanylate cyclase, GGDEF domain THII_1957 PF17854 FtsK alpha domain THII_1957 PF09397 Ftsk gamma domain THII_1957 PF01580 FtsK/SpoIIIE family THII_1957 PF13491 4TM region of DNA translocase FtsK/SpoIIIE THII_1959 PF13847 Methyltransferase domain THII_1960 PF04379 ApaG domain THII_1962 PF04166 Pyridoxal phosphate biosynthetic protein PdxA THII_1963 PF00639 PPIC-type PPIASE domain THII_1963 PF09312 SurA N-terminal domain THII_1969 PF13732 Domain of unknown function (DUF4162) THII_1969 PF00005 ABC transporter THII_1970 PF07728 AAA domain (dynein-related subfamily) THII_1970 PF08406 CbbQ/NirQ/NorQ C-terminal THII_1972 PF00462 Glutaredoxin THII_1974 PF00691 OmpA family THII_1977 PF00117 Glutamine amidotransferase class-I THII_1978 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THII_1978 PF00437 Type II/IV secretion system protein THII_1979 PF00482 Type II secretion system (T2SS), protein F THII_1980 PF06750 Bacterial Peptidase A24 N-terminal domain THII_1980 PF01478 Type IV leader peptidase family THII_1981 PF01121 Dephospho-CoA kinase THII_1982 PF07072 Cell division protein THII_1983 PF00072 Response regulator receiver domain THII_1984 PF00072 Response regulator receiver domain THII_1986 PF01584 CheW-like domain THII_1987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_1987 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term THII_1988 PF07194 P2 response regulator binding domain THII_1988 PF01627 Hpt domain THII_1988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_1988 PF02895 Signal transducing histidine kinase, homodimeric domain THII_1988 PF01584 CheW-like domain THII_1991 PF03747 ADP-ribosylglycohydrolase THII_2000 PF01850 PIN domain THII_2002 PF01381 Helix-turn-helix THII_2023 PF17866 AAA lid domain THII_2023 PF00004 ATPase family associated with various cellular activities (AAA) THII_2036 PF01909 Nucleotidyltransferase domain THII_2042 PF01381 Helix-turn-helix THII_2048 PF00089 Trypsin THII_2050 PF03461 TRCF domain THII_2050 PF00270 DEAD/DEAH box helicase THII_2050 PF17757 UvrB interaction domain THII_2050 PF02559 CarD-like/TRCF domain THII_2050 PF00271 Helicase conserved C-terminal domain THII_2051 PF04445 Putative SAM-dependent methyltransferase THII_2053 PF00360 Phytochrome region THII_2053 PF00563 EAL domain THII_2053 PF01590 GAF domain THII_2053 PF00990 Diguanylate cyclase, GGDEF domain THII_2055 PF00588 SpoU rRNA Methylase family THII_2056 PF01464 Transglycosylase SLT domain THII_2057 PF13514 AAA domain THII_2061 PF00149 Calcineurin-like phosphoesterase THII_2067 PF03279 Bacterial lipid A biosynthesis acyltransferase THII_2069 PF00482 Type II secretion system (T2SS), protein F THII_2075 PF08334 Type II secretion system (T2SS), protein G THII_2075 PF07963 Prokaryotic N-terminal methylation motif THII_2077 PF00534 Glycosyl transferases group 1 THII_2077 PF13439 Glycosyltransferase Family 4 THII_2078 PF02705 K+ potassium transporter THII_2081 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain THII_2081 PF02951 Prokaryotic glutathione synthetase, N-terminal domain THII_2082 PF01571 Aminomethyltransferase folate-binding domain THII_2082 PF08669 Glycine cleavage T-protein C-terminal barrel domain THII_2083 PF01597 Glycine cleavage H-protein THII_2084 PF02347 Glycine cleavage system P-protein THII_2085 PF00072 Response regulator receiver domain THII_2086 PF10990 Protein of unknown function (DUF2809) THII_2090 PF00696 Amino acid kinase family THII_2090 PF01472 PUA domain THII_2093 PF01618 MotA/TolQ/ExbB proton channel family THII_2098 PF00596 Class II Aldolase and Adducin N-terminal domain THII_2100 PF13401 AAA domain THII_2100 PF01471 Putative peptidoglycan binding domain THII_2102 PF07687 Peptidase dimerisation domain THII_2102 PF01546 Peptidase family M20/M25/M40 THII_2103 PF00639 PPIC-type PPIASE domain THII_2104 PF01722 BolA-like protein THII_2105 PF03795 YCII-related domain THII_2106 PF13291 ACT domain THII_2106 PF04607 Region found in RelA / SpoT proteins THII_2106 PF02824 TGS domain THII_2107 PF04279 Intracellular septation protein A THII_2109 PF00005 ABC transporter THII_2110 PF02405 Permease MlaE THII_2112 PF02472 Biopolymer transport protein ExbD/TolR THII_2113 PF00572 Ribosomal protein L13 THII_2114 PF00380 Ribosomal protein S9/S16 THII_2115 PF00128 Alpha amylase, catalytic domain THII_2115 PF02806 Alpha amylase, C-terminal all-beta domain THII_2115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) THII_2118 PF00459 Inositol monophosphatase family THII_2119 PF01812 5-formyltetrahydrofolate cyclo-ligase family THII_2120 PF12894 Anaphase-promoting complex subunit 4 WD40 domain THII_2120 PF00400 WD domain, G-beta repeat THII_2123 PF00501 AMP-binding enzyme THII_2123 PF13193 AMP-binding enzyme C-terminal domain THII_2123 PF01553 Acyltransferase THII_2127 PF05973 Phage derived protein Gp49-like (DUF891) THII_2128 PF01381 Helix-turn-helix THII_2132 PF03702 Anhydro-N-acetylmuramic acid kinase THII_2133 PF01494 FAD binding domain THII_2134 PF05685 Putative restriction endonuclease THII_2136 PF00999 Sodium/hydrogen exchanger family THII_2136 PF02254 TrkA-N domain THII_2139 PF00171 Aldehyde dehydrogenase family THII_2141 PF03275 UDP-galactopyranose mutase THII_2144 PF01553 Acyltransferase THII_2152 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase THII_2152 PF03033 Glycosyltransferase family 28 N-terminal domain THII_2161 PF04205 FMN-binding domain THII_2162 PF03116 NQR2, RnfD, RnfE family THII_2163 PF13375 RnfC Barrel sandwich hybrid domain THII_2163 PF10531 SLBB domain THII_2163 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THII_2163 PF12838 4Fe-4S dicluster domain THII_2164 PF04060 Putative Fe-S cluster THII_2165 PF02508 Rnf-Nqr subunit, membrane protein THII_2166 PF03358 NADPH-dependent FMN reductase THII_2168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2168 PF00512 His Kinase A (phospho-acceptor) domain THII_2168 PF01627 Hpt domain THII_2168 PF00072 Response regulator receiver domain THII_2168 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_2168 PF00672 HAMP domain THII_2169 PF00072 Response regulator receiver domain THII_2169 PF01627 Hpt domain THII_2169 PF00512 His Kinase A (phospho-acceptor) domain THII_2169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2169 PF00672 HAMP domain THII_2169 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_2170 PF01648 4'-phosphopantetheinyl transferase superfamily THII_2171 PF13667 ThiC-associated domain THII_2171 PF01964 Radical SAM ThiC family THII_2173 PF02321 Outer membrane efflux protein THII_2174 PF00082 Subtilase family THII_2174 PF01483 Proprotein convertase P-domain THII_2175 PF00672 HAMP domain THII_2175 PF02203 Tar ligand binding domain homologue THII_2175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_2176 PF01584 CheW-like domain THII_2177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2177 PF02895 Signal transducing histidine kinase, homodimeric domain THII_2177 PF01627 Hpt domain THII_2177 PF01584 CheW-like domain THII_2178 PF00072 Response regulator receiver domain THII_2179 PF09115 DNA polymerase III, delta subunit, C terminal THII_2181 PF01026 TatD related DNase THII_2182 PF00294 pfkB family carbohydrate kinase THII_2184 PF03232 Ubiquinone biosynthesis protein COQ7 THII_2185 PF01479 S4 domain THII_2188 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_2188 PF00672 HAMP domain THII_2188 PF12729 Four helix bundle sensory module for signal transduction THII_2194 PF00550 Phosphopantetheine attachment site THII_2199 PF03400 IS1 transposase THII_2201 PF13193 AMP-binding enzyme C-terminal domain THII_2201 PF00501 AMP-binding enzyme THII_2201 PF00668 Condensation domain THII_2201 PF00550 Phosphopantetheine attachment site THII_2201 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_2201 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_2201 PF08659 KR domain THII_2201 PF14765 Polyketide synthase dehydratase THII_2201 PF16197 Ketoacyl-synthetase C-terminal extension THII_2202 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_2202 PF14765 Polyketide synthase dehydratase THII_2202 PF00550 Phosphopantetheine attachment site THII_2202 PF08659 KR domain THII_2202 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_2202 PF13193 AMP-binding enzyme C-terminal domain THII_2202 PF00668 Condensation domain THII_2202 PF00550 Phosphopantetheine attachment site THII_2202 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_2202 PF00501 AMP-binding enzyme THII_2202 PF00668 Condensation domain THII_2202 PF13193 AMP-binding enzyme C-terminal domain THII_2202 PF16197 Ketoacyl-synthetase C-terminal extension THII_2202 PF00501 AMP-binding enzyme THII_2202 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_2202 PF16197 Ketoacyl-synthetase C-terminal extension THII_2202 PF14765 Polyketide synthase dehydratase THII_2202 PF08659 KR domain THII_2204 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THII_2204 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain THII_2206 PF00441 Acyl-CoA dehydrogenase, C-terminal domain THII_2206 PF02770 Acyl-CoA dehydrogenase, middle domain THII_2206 PF02771 Acyl-CoA dehydrogenase, N-terminal domain THII_2208 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_2208 PF08659 KR domain THII_2208 PF16197 Ketoacyl-synthetase C-terminal extension THII_2208 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_2208 PF00550 Phosphopantetheine attachment site THII_2208 PF14765 Polyketide synthase dehydratase THII_2209 PF00550 Phosphopantetheine attachment site THII_2209 PF08659 KR domain THII_2209 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_2209 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_2209 PF14765 Polyketide synthase dehydratase THII_2209 PF00501 AMP-binding enzyme THII_2209 PF13193 AMP-binding enzyme C-terminal domain THII_2209 PF16197 Ketoacyl-synthetase C-terminal extension THII_2209 PF00668 Condensation domain THII_2211 PF13808 DDE_Tnp_1-associated THII_2211 PF01609 Transposase DDE domain THII_2215 PF00698 Acyl transferase domain THII_2217 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_2217 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_2218 PF01609 Transposase DDE domain THII_2218 PF13808 DDE_Tnp_1-associated THII_2219 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal THII_2219 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal THII_2220 PF00378 Enoyl-CoA hydratase/isomerase THII_2238 PF00391 PEP-utilising enzyme, mobile domain THII_2238 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THII_2244 PF00403 Heavy-metal-associated domain THII_2249 PF13358 DDE superfamily endonuclease THII_2258 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal THII_2258 PF01926 50S ribosome-binding GTPase THII_2261 PF03958 Bacterial type II/III secretion system short domain THII_2261 PF00263 Bacterial type II and III secretion system protein THII_2262 PF00482 Type II secretion system (T2SS), protein F THII_2263 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain THII_2263 PF00437 Type II/IV secretion system protein THII_2265 PF10458 Valyl tRNA synthetase tRNA binding arm THII_2265 PF00133 tRNA synthetases class I (I, L, M and V) THII_2265 PF08264 Anticodon-binding domain of tRNA THII_2275 PF05161 MOFRL family THII_2275 PF13660 Domain of unknown function (DUF4147) THII_2277 PF01593 Flavin containing amine oxidoreductase THII_2278 PF01593 Flavin containing amine oxidoreductase THII_2279 PF13183 4Fe-4S dicluster domain THII_2279 PF13085 2Fe-2S iron-sulfur cluster binding domain THII_2280 PF02754 Cysteine-rich domain THII_2285 PF00011 Hsp20/alpha crystallin family THII_2286 PF00226 DnaJ domain THII_2286 PF01556 DnaJ C terminal domain THII_2288 PF00149 Calcineurin-like phosphoesterase THII_2289 PF08335 GlnD PII-uridylyltransferase THII_2289 PF03710 Glutamate-ammonia ligase adenylyltransferase THII_2291 PF01063 Amino-transferase class IV THII_2292 PF00425 chorismate binding enzyme THII_2294 PF00072 Response regulator receiver domain THII_2294 PF09308 LuxQ, periplasmic THII_2294 PF00512 His Kinase A (phospho-acceptor) domain THII_2294 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2295 PF01339 CheB methylesterase THII_2296 PF01739 CheR methyltransferase, SAM binding domain THII_2296 PF03705 CheR methyltransferase, all-alpha domain THII_2299 PF00535 Glycosyl transferase family 2 THII_2300 PF00534 Glycosyl transferases group 1 THII_2300 PF13439 Glycosyltransferase Family 4 THII_2301 PF00535 Glycosyl transferase family 2 THII_2303 PF13537 Glutamine amidotransferase domain THII_2303 PF00733 Asparagine synthase THII_2305 PF06071 Protein of unknown function (DUF933) THII_2305 PF01926 50S ribosome-binding GTPase THII_2306 PF01195 Peptidyl-tRNA hydrolase THII_2307 PF14693 Ribosomal protein TL5, C-terminal domain THII_2307 PF01386 Ribosomal L25p family THII_2308 PF14572 Phosphoribosyl synthetase-associated domain THII_2308 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase THII_2309 PF08544 GHMP kinases C terminal THII_2309 PF00288 GHMP kinases N terminal domain THII_2310 PF03550 Outer membrane lipoprotein LolB THII_2312 PF00578 AhpC/TSA family THII_2313 PF02562 PhoH-like protein THII_2313 PF13638 PIN domain THII_2314 PF00571 CBS domain THII_2314 PF00478 IMP dehydrogenase / GMP reductase domain THII_2315 PF00092 von Willebrand factor type A domain THII_2316 PF04055 Radical SAM superfamily THII_2323 PF01555 DNA methylase THII_2325 PF09308 LuxQ, periplasmic THII_2325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2325 PF00512 His Kinase A (phospho-acceptor) domain THII_2325 PF00072 Response regulator receiver domain THII_2326 PF01066 CDP-alcohol phosphatidyltransferase THII_2327 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain THII_2327 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain THII_2331 PF10369 Small subunit of acetolactate synthase THII_2332 PF00205 Thiamine pyrophosphate enzyme, central domain THII_2332 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain THII_2332 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THII_2333 PF13746 4Fe-4S dicluster domain THII_2333 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase THII_2333 PF12801 4Fe-4S binding domain THII_2338 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain THII_2338 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain THII_2338 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family THII_2339 PF00581 Rhodanese-like domain THII_2340 PF00301 Rubredoxin THII_2341 PF10120 Thiamine-phosphate synthase THII_2341 PF08543 Phosphomethylpyrimidine kinase THII_2342 PF02581 Thiamine monophosphate synthase THII_2343 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase THII_2345 PF02954 Bacterial regulatory protein, Fis family THII_2345 PF00072 Response regulator receiver domain THII_2345 PF00158 Sigma-54 interaction domain THII_2348 PF00571 CBS domain THII_2348 PF00478 IMP dehydrogenase / GMP reductase domain THII_2349 PF01894 Uncharacterised protein family UPF0047 THII_2352 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain THII_2352 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain THII_2353 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_2353 PF00072 Response regulator receiver domain THII_2355 PF16916 Dimerisation domain of Zinc Transporter THII_2355 PF01545 Cation efflux family THII_2358 PF00578 AhpC/TSA family THII_2359 PF01926 50S ribosome-binding GTPase THII_2360 PF10431 C-terminal, D2-small domain, of ClpB protein THII_2360 PF02861 Clp amino terminal domain, pathogenicity island component THII_2360 PF17871 AAA lid domain THII_2360 PF07724 AAA domain (Cdc48 subfamily) THII_2360 PF00004 ATPase family associated with various cellular activities (AAA) THII_2361 PF02617 ATP-dependent Clp protease adaptor protein ClpS THII_2365 PF04545 Sigma-70, region 4 THII_2365 PF04542 Sigma-70 region 2 THII_2365 PF00140 Sigma-70 factor, region 1.2 THII_2366 PF01636 Phosphotransferase enzyme family THII_2367 PF00483 Nucleotidyl transferase THII_2368 PF00453 Ribosomal protein L20 THII_2369 PF01632 Ribosomal protein L35 THII_2370 PF05198 Translation initiation factor IF-3, N-terminal domain THII_2370 PF00707 Translation initiation factor IF-3, C-terminal domain THII_2371 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain THII_2371 PF02824 TGS domain THII_2371 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THII_2371 PF03129 Anticodon binding domain THII_2373 PF00684 DnaJ central domain THII_2373 PF01556 DnaJ C terminal domain THII_2373 PF00226 DnaJ domain THII_2375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2375 PF00672 HAMP domain THII_2375 PF01627 Hpt domain THII_2375 PF00072 Response regulator receiver domain THII_2375 PF00512 His Kinase A (phospho-acceptor) domain THII_2375 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_2378 PF13545 Crp-like helix-turn-helix domain THII_2378 PF00027 Cyclic nucleotide-binding domain THII_2381 PF00850 Histone deacetylase domain THII_2382 PF05685 Putative restriction endonuclease THII_2390 PF17209 Hfq protein THII_2391 PF16360 GTP-binding GTPase Middle Region THII_2391 PF13167 GTP-binding GTPase N-terminal THII_2391 PF01926 50S ribosome-binding GTPase THII_2392 PF01145 SPFH domain / Band 7 family THII_2392 PF12221 Bacterial membrane protein N terminal THII_2393 PF01145 SPFH domain / Band 7 family THII_2394 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) THII_2395 PF13393 Histidyl-tRNA synthetase THII_2396 PF00709 Adenylosuccinate synthetase THII_2397 PF02678 Pirin THII_2397 PF17954 Quercetinase C-terminal cupin domain THII_2403 PF00082 Subtilase family THII_2406 PF00072 Response regulator receiver domain THII_2406 PF00486 Transcriptional regulatory protein, C terminal THII_2407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2407 PF00512 His Kinase A (phospho-acceptor) domain THII_2407 PF00672 HAMP domain THII_2413 PF02508 Rnf-Nqr subunit, membrane protein THII_2415 PF00730 HhH-GPD superfamily base excision DNA repair protein THII_2415 PF00633 Helix-hairpin-helix motif THII_2415 PF10576 Iron-sulfur binding domain of endonuclease III THII_2416 PF02527 rRNA small subunit methyltransferase G THII_2420 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system THII_2424 PF07728 AAA domain (dynein-related subfamily) THII_2424 PF08406 CbbQ/NirQ/NorQ C-terminal THII_2425 PF00920 Dehydratase family THII_2428 PF02481 DNA recombination-mediator protein A THII_2428 PF17782 DprA winged helix domain THII_2429 PF04361 Protein of unknown function (DUF494) THII_2430 PF13368 Topoisomerase C-terminal repeat THII_2430 PF01751 Toprim domain THII_2430 PF01131 DNA topoisomerase THII_2431 PF01300 Telomere recombination THII_2432 PF00543 Nitrogen regulatory protein P-II THII_2433 PF00909 Ammonium Transporter Family THII_2435 PF00691 OmpA family THII_2439 PF01556 DnaJ C terminal domain THII_2439 PF00684 DnaJ central domain THII_2439 PF00226 DnaJ domain THII_2440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2440 PF00672 HAMP domain THII_2440 PF00512 His Kinase A (phospho-acceptor) domain THII_2440 PF01627 Hpt domain THII_2440 PF00072 Response regulator receiver domain THII_2440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_2442 PF01339 CheB methylesterase THII_2442 PF00072 Response regulator receiver domain THII_2443 PF03975 CheD chemotactic sensory transduction THII_2444 PF01739 CheR methyltransferase, SAM binding domain THII_2444 PF03705 CheR methyltransferase, all-alpha domain THII_2446 PF02203 Tar ligand binding domain homologue THII_2446 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_2446 PF00672 HAMP domain THII_2447 PF00672 HAMP domain THII_2447 PF02203 Tar ligand binding domain homologue THII_2447 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_2449 PF02589 LUD domain THII_2450 PF11870 Domain of unknown function (DUF3390) THII_2450 PF13183 4Fe-4S dicluster domain THII_2450 PF02589 LUD domain THII_2458 PF00114 Pilin (bacterial filament) THII_2458 PF07963 Prokaryotic N-terminal methylation motif THII_2459 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THII_2459 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THII_2462 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit THII_2462 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal THII_2463 PF02333 Phytase THII_2464 PF02405 Permease MlaE THII_2465 PF01476 LysM domain THII_2465 PF06725 3D domain THII_2475 PF02397 Bacterial sugar transferase THII_2476 PF02397 Bacterial sugar transferase THII_2478 PF03741 Integral membrane protein TerC family THII_2480 PF00291 Pyridoxal-phosphate dependent enzyme THII_2481 PF02501 Type II secretion system (T2SS), protein I THII_2481 PF07963 Prokaryotic N-terminal methylation motif THII_2485 PF03400 IS1 transposase THII_2488 PF00106 short chain dehydrogenase THII_2489 PF02910 Fumarate reductase flavoprotein C-term THII_2489 PF00890 FAD binding domain THII_2491 PF13180 PDZ domain THII_2493 PF00679 Elongation factor G C-terminus THII_2493 PF00009 Elongation factor Tu GTP binding domain THII_2493 PF06421 GTP-binding protein LepA C-terminus THII_2494 PF10502 Signal peptidase, peptidase S26 THII_2496 PF14622 Ribonuclease-III-like THII_2496 PF00035 Double-stranded RNA binding motif THII_2497 PF01926 50S ribosome-binding GTPase THII_2497 PF07650 KH domain THII_2503 PF00561 alpha/beta hydrolase fold THII_2507 PF01370 NAD dependent epimerase/dehydratase family THII_2508 PF02754 Cysteine-rich domain THII_2514 PF02463 RecF/RecN/SMC N terminal domain THII_2520 PF00437 Type II/IV secretion system protein THII_2522 PF03658 RnfH family Ubiquitin THII_2523 PF02508 Rnf-Nqr subunit, membrane protein THII_2527 PF03006 Haemolysin-III related THII_2528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2528 PF00512 His Kinase A (phospho-acceptor) domain THII_2528 PF00072 Response regulator receiver domain THII_2528 PF09308 LuxQ, periplasmic THII_2529 PF07726 ATPase family associated with various cellular activities (AAA) THII_2529 PF17863 AAA lid domain THII_2531 PF08245 Mur ligase middle domain THII_2531 PF02875 Mur ligase family, glutamate ligase domain THII_2532 PF04101 Glycosyltransferase family 28 C-terminal domain THII_2532 PF03033 Glycosyltransferase family 28 N-terminal domain THII_2533 PF08245 Mur ligase middle domain THII_2533 PF02875 Mur ligase family, glutamate ligase domain THII_2533 PF01225 Mur ligase family, catalytic domain THII_2534 PF01565 FAD binding domain THII_2534 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain THII_2535 PF01820 D-ala D-ala ligase N-terminus THII_2535 PF07478 D-ala D-ala ligase C-terminus THII_2536 PF08478 POTRA domain, FtsQ-type THII_2536 PF03799 Cell division protein FtsQ THII_2537 PF02491 SHS2 domain inserted in FTSA THII_2538 PF00091 Tubulin/FtsZ family, GTPase domain THII_2538 PF12327 FtsZ family, C-terminal domain THII_2539 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase THII_2541 PF01551 Peptidase family M23 THII_2545 PF00132 Bacterial transferase hexapeptide (six repeats) THII_2546 PF05736 OprF membrane domain THII_2546 PF00691 OmpA family THII_2548 PF06629 MltA-interacting protein MipA THII_2551 PF02592 Putative vitamin uptake transporter THII_2552 PF02673 Bacitracin resistance protein BacA THII_2554 PF07969 Amidohydrolase family THII_2555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2555 PF00989 PAS fold THII_2556 PF00158 Sigma-54 interaction domain THII_2556 PF13185 GAF domain THII_2556 PF02954 Bacterial regulatory protein, Fis family THII_2564 PF03658 RnfH family Ubiquitin THII_2565 PF02508 Rnf-Nqr subunit, membrane protein THII_2566 PF04205 FMN-binding domain THII_2567 PF03116 NQR2, RnfD, RnfE family THII_2568 PF13375 RnfC Barrel sandwich hybrid domain THII_2568 PF10531 SLBB domain THII_2568 PF13237 4Fe-4S dicluster domain THII_2568 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit THII_2569 PF04060 Putative Fe-S cluster THII_2570 PF02508 Rnf-Nqr subunit, membrane protein THII_2571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2571 PF00989 PAS fold THII_2572 PF02954 Bacterial regulatory protein, Fis family THII_2572 PF00158 Sigma-54 interaction domain THII_2572 PF13185 GAF domain THII_2574 PF01850 PIN domain THII_2578 PF01189 16S rRNA methyltransferase RsmB/F THII_2578 PF01029 NusB family THII_2580 PF00989 PAS fold THII_2580 PF00672 HAMP domain THII_2580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2580 PF00512 His Kinase A (phospho-acceptor) domain THII_2581 PF00072 Response regulator receiver domain THII_2581 PF02954 Bacterial regulatory protein, Fis family THII_2581 PF00158 Sigma-54 interaction domain THII_2582 PF00512 His Kinase A (phospho-acceptor) domain THII_2582 PF00672 HAMP domain THII_2582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2582 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_2582 PF01627 Hpt domain THII_2582 PF00072 Response regulator receiver domain THII_2584 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase THII_2584 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase THII_2588 PF01381 Helix-turn-helix THII_2589 PF00521 DNA gyrase/topoisomerase IV, subunit A THII_2589 PF03989 DNA gyrase C-terminal domain, beta-propeller THII_2594 PF02347 Glycine cleavage system P-protein THII_2595 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit THII_2597 PF02556 Preprotein translocase subunit SecB THII_2598 PF00581 Rhodanese-like domain THII_2603 PF00528 Binding-protein-dependent transport system inner membrane component THII_2604 PF00528 Binding-protein-dependent transport system inner membrane component THII_2605 PF12857 TOBE-like domain THII_2605 PF17850 CysA C-terminal regulatory domain THII_2605 PF00005 ABC transporter THII_2606 PF04754 Putative transposase, YhgA-like THII_2609 PF08676 MutL C terminal dimerisation domain THII_2609 PF01119 DNA mismatch repair protein, C-terminal domain THII_2610 PF00497 Bacterial extracellular solute-binding proteins, family 3 THII_2610 PF01464 Transglycosylase SLT domain THII_2611 PF05191 Adenylate kinase, active site lid THII_2619 PF13358 DDE superfamily endonuclease THII_2622 PF00391 PEP-utilising enzyme, mobile domain THII_2622 PF02896 PEP-utilising enzyme, TIM barrel domain THII_2622 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain THII_2628 PF04384 Iron-sulphur cluster assembly THII_2629 PF00111 2Fe-2S iron-sulfur cluster binding domain THII_2630 PF00012 Hsp70 protein THII_2631 PF07743 HSCB C-terminal oligomerisation domain THII_2632 PF01521 Iron-sulphur cluster biosynthesis THII_2635 PF01592 NifU-like N terminal domain THII_2636 PF00266 Aminotransferase class-V THII_2637 PF02082 Transcriptional regulator THII_2640 PF00534 Glycosyl transferases group 1 THII_2640 PF13439 Glycosyltransferase Family 4 THII_2641 PF08323 Starch synthase catalytic domain THII_2641 PF00534 Glycosyl transferases group 1 THII_2646 PF00501 AMP-binding enzyme THII_2647 PF05257 CHAP domain THII_2647 PF01476 LysM domain THII_2648 PF05257 CHAP domain THII_2648 PF01476 LysM domain THII_2650 PF00149 Calcineurin-like phosphoesterase THII_2650 PF02872 5'-nucleotidase, C-terminal domain THII_2651 PF01545 Cation efflux family THII_2652 PF09335 SNARE associated Golgi protein THII_2659 PF00082 Subtilase family THII_2659 PF05922 Peptidase inhibitor I9 THII_2662 PF01850 PIN domain THII_2663 PF05192 MutS domain III THII_2663 PF05190 MutS family domain IV THII_2663 PF00488 MutS domain V THII_2663 PF05188 MutS domain II THII_2663 PF01624 MutS domain I THII_2664 PF00561 alpha/beta hydrolase fold THII_2666 PF13358 DDE superfamily endonuclease THII_2670 PF01137 RNA 3'-terminal phosphate cyclase THII_2670 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain THII_2673 PF04389 Peptidase family M28 THII_2673 PF02225 PA domain THII_2678 PF04055 Radical SAM superfamily THII_2678 PF16199 Radical_SAM C-terminal domain THII_2679 PF09828 Chromate resistance exported protein THII_2681 PF09828 Chromate resistance exported protein THII_2688 PF01872 RibD C-terminal domain THII_2689 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) THII_2691 PF01209 ubiE/COQ5 methyltransferase family THII_2692 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle THII_2693 PF00990 Diguanylate cyclase, GGDEF domain THII_2693 PF17158 Membrane-associated sensor, integral membrane domain THII_2694 PF00586 AIR synthase related protein, N-terminal domain THII_2694 PF02769 AIR synthase related protein, C-terminal domain THII_2696 PF01027 Inhibitor of apoptosis-promoting Bax1 THII_2698 PF05685 Putative restriction endonuclease THII_2699 PF00072 Response regulator receiver domain THII_2700 PF07963 Prokaryotic N-terminal methylation motif THII_2700 PF08334 Type II secretion system (T2SS), protein G THII_2707 PF13614 AAA domain THII_2708 PF01555 DNA methylase THII_2709 PF00226 DnaJ domain THII_2709 PF01556 DnaJ C terminal domain THII_2709 PF00684 DnaJ central domain THII_2710 PF00012 Hsp70 protein THII_2711 PF01025 GrpE THII_2712 PF01628 HrcA protein C terminal domain THII_2712 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding THII_2713 PF01513 ATP-NAD kinase THII_2714 PF04356 Protein of unknown function (DUF489) THII_2716 PF05134 Type II secretion system (T2SS), protein L THII_2716 PF12693 GspL periplasmic domain THII_2717 PF00293 NUDIX domain THII_2721 PF00994 Probable molybdopterin binding domain THII_2721 PF03454 MoeA C-terminal region (domain IV) THII_2721 PF03453 MoeA N-terminal region (domain I and II) THII_2722 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain THII_2722 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THII_2724 PF03143 Elongation factor Tu C-terminal domain THII_2724 PF03144 Elongation factor Tu domain 2 THII_2724 PF00009 Elongation factor Tu GTP binding domain THII_2725 PF00584 SecE/Sec61-gamma subunits of protein translocation complex THII_2726 PF00467 KOW motif THII_2726 PF02357 Transcription termination factor nusG THII_2727 PF03946 Ribosomal protein L11, N-terminal domain THII_2727 PF00298 Ribosomal protein L11, RNA binding domain THII_2728 PF00687 Ribosomal protein L1p/L10e family THII_2729 PF00466 Ribosomal protein L10 THII_2730 PF00542 Ribosomal protein L7/L12 C-terminal domain THII_2730 PF16320 Ribosomal protein L7/L12 dimerisation domain THII_2731 PF04565 RNA polymerase Rpb2, domain 3 THII_2731 PF10385 RNA polymerase beta subunit external 1 domain THII_2731 PF04561 RNA polymerase Rpb2, domain 2 THII_2731 PF04563 RNA polymerase beta subunit THII_2731 PF00562 RNA polymerase Rpb2, domain 6 THII_2731 PF04560 RNA polymerase Rpb2, domain 7 THII_2732 PF00623 RNA polymerase Rpb1, domain 2 THII_2732 PF04997 RNA polymerase Rpb1, domain 1 THII_2732 PF05000 RNA polymerase Rpb1, domain 4 THII_2732 PF04998 RNA polymerase Rpb1, domain 5 THII_2732 PF04983 RNA polymerase Rpb1, domain 3 THII_2735 PF00005 ABC transporter THII_2738 PF00005 ABC transporter THII_2747 PF00271 Helicase conserved C-terminal domain THII_2747 PF03461 TRCF domain THII_2747 PF02559 CarD-like/TRCF domain THII_2747 PF17757 UvrB interaction domain THII_2747 PF00270 DEAD/DEAH box helicase THII_2748 PF02091 Glycyl-tRNA synthetase alpha subunit THII_2749 PF02092 Glycyl-tRNA synthetase beta subunit THII_2749 PF05746 DALR anticodon binding domain THII_2751 PF00692 dUTPase THII_2752 PF02954 Bacterial regulatory protein, Fis family THII_2752 PF00072 Response regulator receiver domain THII_2752 PF00158 Sigma-54 interaction domain THII_2753 PF00512 His Kinase A (phospho-acceptor) domain THII_2753 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2755 PF01029 NusB family THII_2756 PF00885 6,7-dimethyl-8-ribityllumazine synthase THII_2757 PF00925 GTP cyclohydrolase II THII_2757 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase THII_2760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain THII_2760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain THII_2761 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch THII_2762 PF02233 NAD(P) transhydrogenase beta subunit THII_2763 PF00313 'Cold-shock' DNA-binding domain THII_2764 PF01565 FAD binding domain THII_2764 PF02913 FAD linked oxidases, C-terminal domain THII_2770 PF13340 Putative transposase of IS4/5 family (DUF4096) THII_2771 PF00664 ABC transporter transmembrane region THII_2771 PF00005 ABC transporter THII_2776 PF13186 Iron-sulfur cluster-binding domain THII_2776 PF04055 Radical SAM superfamily THII_2780 PF00884 Sulfatase THII_2781 PF00884 Sulfatase THII_2782 PF07993 Male sterility protein THII_2782 PF00550 Phosphopantetheine attachment site THII_2783 PF00501 AMP-binding enzyme THII_2783 PF08241 Methyltransferase domain THII_2783 PF00391 PEP-utilising enzyme, mobile domain THII_2783 PF00550 Phosphopantetheine attachment site THII_2783 PF00975 Thioesterase domain THII_2783 PF13193 AMP-binding enzyme C-terminal domain THII_2783 PF00668 Condensation domain THII_2785 PF05175 Methyltransferase small domain THII_2788 PF08240 Alcohol dehydrogenase GroES-like domain THII_2788 PF00107 Zinc-binding dehydrogenase THII_2794 PF00550 Phosphopantetheine attachment site THII_2796 PF00668 Condensation domain THII_2796 PF00550 Phosphopantetheine attachment site THII_2796 PF00501 AMP-binding enzyme THII_2796 PF13193 AMP-binding enzyme C-terminal domain THII_2797 PF01947 p-hydroxybenzoic acid synthase THII_2799 PF16861 Carbamoyltransferase C-terminus THII_2799 PF02543 Carbamoyltransferase N-terminus THII_2800 PF04055 Radical SAM superfamily THII_2800 PF06969 HemN C-terminal domain THII_2803 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THII_2803 PF11890 Domain of unknown function (DUF3410) THII_2803 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THII_2805 PF01494 FAD binding domain THII_2806 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain THII_2806 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain THII_2806 PF06827 Zinc finger found in FPG and IleRS THII_2810 PF02580 D-Tyr-tRNA(Tyr) deacylase THII_2811 PF01668 SmpB protein THII_2812 PF03364 Polyketide cyclase / dehydrase and lipid transport THII_2813 PF03658 RnfH family Ubiquitin THII_2814 PF04355 SmpA / OmlA family THII_2815 PF01475 Ferric uptake regulator family THII_2825 PF00075 RNase H THII_2826 PF08241 Methyltransferase domain THII_2827 PF02575 YbaB/EbfC DNA-binding family THII_2828 PF12170 DNA polymerase III tau subunit V interacting with alpha THII_2828 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding THII_2828 PF12169 DNA polymerase III subunits gamma and tau domain III THII_2836 PF07690 Major Facilitator Superfamily THII_2838 PF04397 LytTr DNA-binding domain THII_2838 PF00072 Response regulator receiver domain THII_2840 PF03462 PCRF domain THII_2840 PF00472 RF-1 domain THII_2841 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain THII_2841 PF01488 Shikimate / quinate 5-dehydrogenase THII_2841 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain THII_2843 PF07963 Prokaryotic N-terminal methylation motif THII_2843 PF08334 Type II secretion system (T2SS), protein G THII_2844 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III THII_2844 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II THII_2844 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I THII_2844 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain THII_2848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THII_2848 PF03466 LysR substrate binding domain THII_2850 PF01594 AI-2E family transporter THII_2851 PF05154 TM2 domain THII_2859 PF00871 Acetokinase family THII_2875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THII_2878 PF17805 AsnC-like ligand binding domain THII_2878 PF13404 AsnC-type helix-turn-helix domain THII_2879 PF17805 AsnC-like ligand binding domain THII_2880 PF17805 AsnC-like ligand binding domain THII_2881 PF17805 AsnC-like ligand binding domain THII_2882 PF04055 Radical SAM superfamily THII_2882 PF06463 Molybdenum Cofactor Synthesis C THII_2884 PF00116 Cytochrome C oxidase subunit II, periplasmic domain THII_2884 PF18764 Nitrous oxide reductase propeller repeat THII_2884 PF18793 Nitrous oxide reductase propeller repeat 2 THII_2885 PF00034 Cytochrome c THII_2889 PF12838 4Fe-4S dicluster domain THII_2891 PF00005 ABC transporter THII_2907 PF05524 PEP-utilising enzyme, N-terminal THII_2907 PF02896 PEP-utilising enzyme, TIM barrel domain THII_2907 PF00391 PEP-utilising enzyme, mobile domain THII_2908 PF00381 PTS HPr component phosphorylation site THII_2910 PF03668 P-loop ATPase protein family THII_2911 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THII_2911 PF05221 S-adenosyl-L-homocysteine hydrolase THII_2912 PF02772 S-adenosylmethionine synthetase, central domain THII_2912 PF02773 S-adenosylmethionine synthetase, C-terminal domain THII_2912 PF00438 S-adenosylmethionine synthetase, N-terminal domain THII_2913 PF00117 Glutamine amidotransferase class-I THII_2913 PF06418 CTP synthase N-terminus THII_2914 PF04539 Sigma-70 region 3 THII_2914 PF04545 Sigma-70, region 4 THII_2914 PF04542 Sigma-70 region 2 THII_2914 PF00140 Sigma-70 factor, region 1.2 THII_2917 PF01016 Ribosomal L27 protein THII_2918 PF01018 GTP1/OBG THII_2918 PF01926 50S ribosome-binding GTPase THII_2922 PF02195 ParB-like nuclease domain THII_2925 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ THII_2931 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain THII_2931 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain THII_2932 PF02874 ATP synthase alpha/beta family, beta-barrel domain THII_2932 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THII_2933 PF00231 ATP synthase THII_2935 PF00677 Lumazine binding domain THII_2936 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain THII_2936 PF02874 ATP synthase alpha/beta family, beta-barrel domain THII_2936 PF00306 ATP synthase alpha/beta chain, C terminal domain THII_2937 PF00213 ATP synthase delta (OSCP) subunit THII_2938 PF00430 ATP synthase B/B' CF(0) THII_2939 PF00137 ATP synthase subunit C THII_2940 PF00119 ATP synthase A chain THII_2942 PF00563 EAL domain THII_2942 PF01590 GAF domain THII_2942 PF00990 Diguanylate cyclase, GGDEF domain THII_2942 PF00989 PAS fold THII_2945 PF00361 Proton-conducting membrane transporter THII_2946 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus THII_2946 PF00361 Proton-conducting membrane transporter THII_2947 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus THII_2947 PF00361 Proton-conducting membrane transporter THII_2948 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L THII_2949 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 THII_2952 PF12838 4Fe-4S dicluster domain THII_2953 PF00146 NADH dehydrogenase THII_2954 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal THII_2954 PF00384 Molybdopterin oxidoreductase THII_2954 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THII_2959 PF00290 Tryptophan synthase alpha chain THII_2960 PF00291 Pyridoxal-phosphate dependent enzyme THII_2963 PF00563 EAL domain THII_2963 PF08448 PAS fold THII_2963 PF00990 Diguanylate cyclase, GGDEF domain THII_2966 PF03372 Endonuclease/Exonuclease/phosphatase family THII_2967 PF13089 Polyphosphate kinase N-terminal domain THII_2967 PF17941 Polyphosphate kinase C-terminal domain 1 THII_2967 PF02503 Polyphosphate kinase middle domain THII_2967 PF13090 Polyphosphate kinase C-terminal domain 2 THII_2969 PF00672 HAMP domain THII_2969 PF00072 Response regulator receiver domain THII_2969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2969 PF00512 His Kinase A (phospho-acceptor) domain THII_2969 PF01627 Hpt domain THII_2969 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_2971 PF01406 tRNA synthetases class I (C) catalytic domain THII_2971 PF09190 DALR domain THII_2972 PF00512 His Kinase A (phospho-acceptor) domain THII_2972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_2973 PF02492 CobW/HypB/UreG, nucleotide-binding domain THII_2975 PF00072 Response regulator receiver domain THII_2976 PF00563 EAL domain THII_2976 PF00990 Diguanylate cyclase, GGDEF domain THII_2976 PF03707 Bacterial signalling protein N terminal repeat THII_2977 PF00437 Type II/IV secretion system protein THII_2979 PF00534 Glycosyl transferases group 1 THII_2980 PF01168 Alanine racemase, N-terminal domain THII_2981 PF00072 Response regulator receiver domain THII_2981 PF00158 Sigma-54 interaction domain THII_2982 PF01649 Ribosomal protein S20 THII_2986 PF01797 Transposase IS200 like THII_2987 PF10119 Predicted methyltransferase regulatory domain THII_2987 PF13847 Methyltransferase domain THII_2988 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THII_2988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THII_3000 PF00750 tRNA synthetases class I (R) THII_3000 PF03485 Arginyl tRNA synthetase N terminal domain THII_3000 PF05746 DALR anticodon binding domain THII_3001 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system THII_3006 PF03764 Elongation factor G, domain IV THII_3006 PF00679 Elongation factor G C-terminus THII_3006 PF00009 Elongation factor Tu GTP binding domain THII_3006 PF03144 Elongation factor Tu domain 2 THII_3006 PF14492 Elongation Factor G, domain II THII_3008 PF01336 OB-fold nucleic acid binding domain THII_3008 PF07733 Bacterial DNA polymerase III alpha NTPase domain THII_3008 PF02811 PHP domain THII_3008 PF14579 Helix-hairpin-helix motif THII_3008 PF17657 Bacterial DNA polymerase III alpha subunit finger domain THII_3016 PF02463 RecF/RecN/SMC N terminal domain THII_3018 PF04030 D-arabinono-1,4-lactone oxidase THII_3018 PF01565 FAD binding domain THII_3019 PF02769 AIR synthase related protein, C-terminal domain THII_3019 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal THII_3019 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain THII_3020 PF00563 EAL domain THII_3020 PF01590 GAF domain THII_3020 PF00360 Phytochrome region THII_3020 PF00990 Diguanylate cyclase, GGDEF domain THII_3021 PF01979 Amidohydrolase family THII_3022 PF00724 NADH:flavin oxidoreductase / NADH oxidase family THII_3027 PF03459 TOBE domain THII_3027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THII_3033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3033 PF00512 His Kinase A (phospho-acceptor) domain THII_3033 PF00989 PAS fold THII_3033 PF11808 Phosphate regulon sensor protein PhoR THII_3034 PF00486 Transcriptional regulatory protein, C terminal THII_3034 PF00072 Response regulator receiver domain THII_3035 PF00294 pfkB family carbohydrate kinase THII_3036 PF00069 Protein kinase domain THII_3039 PF03548 Outer membrane lipoprotein carrier protein LolA THII_3042 PF01590 GAF domain THII_3042 PF00563 EAL domain THII_3042 PF00360 Phytochrome region THII_3042 PF00990 Diguanylate cyclase, GGDEF domain THII_3043 PF11849 Domain of unknown function (DUF3369) THII_3044 PF02369 Bacterial Ig-like domain (group 1) THII_3044 PF09134 Invasin, domain 3 THII_3044 PF11924 Inverse autotransporter, beta-domain THII_3049 PF06144 DNA polymerase III, delta subunit THII_3049 PF14840 Processivity clamp loader gamma complex DNA pol III C-term THII_3051 PF17284 Spermidine synthase tetramerisation domain THII_3052 PF01040 UbiA prenyltransferase family THII_3057 PF00483 Nucleotidyl transferase THII_3057 PF01050 Mannose-6-phosphate isomerase THII_3058 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_3058 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THII_3059 PF00266 Aminotransferase class-V THII_3060 PF01842 ACT domain THII_3060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THII_3060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain THII_3062 PF00512 His Kinase A (phospho-acceptor) domain THII_3062 PF08521 Two-component sensor kinase N-terminal THII_3062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3063 PF00072 Response regulator receiver domain THII_3063 PF00486 Transcriptional regulatory protein, C terminal THII_3068 PF12631 MnmE helical domain THII_3068 PF01926 50S ribosome-binding GTPase THII_3068 PF10396 GTP-binding protein TrmE N-terminus THII_3072 PF17946 RecC C-terminal domain THII_3074 PF02978 Signal peptide binding domain THII_3074 PF02881 SRP54-type protein, helical bundle domain THII_3074 PF00448 SRP54-type protein, GTPase domain THII_3075 PF00005 ABC transporter THII_3075 PF12848 ABC transporter THII_3080 PF02540 NAD synthase THII_3080 PF00795 Carbon-nitrogen hydrolase THII_3081 PF05690 Thiazole biosynthesis protein ThiG THII_3085 PF04319 NifZ domain THII_3086 PF03206 Nitrogen fixation protein NifW THII_3088 PF00682 HMGL-like THII_3092 PF03190 Protein of unknown function, DUF255 THII_3093 PF02219 Methylenetetrahydrofolate reductase THII_3094 PF00158 Sigma-54 interaction domain THII_3094 PF00072 Response regulator receiver domain THII_3094 PF02954 Bacterial regulatory protein, Fis family THII_3095 PF01471 Putative peptidoglycan binding domain THII_3095 PF13401 AAA domain THII_3096 PF00263 Bacterial type II and III secretion system protein THII_3096 PF03958 Bacterial type II/III secretion system short domain THII_3097 PF01809 Putative membrane protein insertion efficiency factor THII_3098 PF02190 ATP-dependent protease La (LON) substrate-binding domain THII_3098 PF05362 Lon protease (S16) C-terminal proteolytic domain THII_3098 PF00004 ATPase family associated with various cellular activities (AAA) THII_3099 PF08461 Ribonuclease R winged-helix domain THII_3099 PF08206 Ribonuclease B OB domain THII_3099 PF00773 RNB domain THII_3099 PF00575 S1 RNA binding domain THII_3099 PF17876 Cold shock domain THII_3102 PF01595 Cyclin M transmembrane N-terminal domain THII_3102 PF03471 Transporter associated domain THII_3102 PF00571 CBS domain THII_3105 PF13187 4Fe-4S dicluster domain THII_3105 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit THII_3106 PF00890 FAD binding domain THII_3107 PF01476 LysM domain THII_3107 PF01551 Peptidase family M23 THII_3107 PF08525 Opacity-associated protein A N-terminal motif THII_3111 PF00034 Cytochrome c THII_3111 PF13442 Cytochrome C oxidase, cbb3-type, subunit III THII_3113 PF02687 FtsX-like permease family THII_3113 PF00005 ABC transporter THII_3113 PF12704 MacB-like periplasmic core domain THII_3114 PF02687 FtsX-like permease family THII_3114 PF12704 MacB-like periplasmic core domain THII_3114 PF00005 ABC transporter THII_3119 PF02719 Polysaccharide biosynthesis protein THII_3120 PF02397 Bacterial sugar transferase THII_3121 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THII_3123 PF00534 Glycosyl transferases group 1 THII_3123 PF13439 Glycosyltransferase Family 4 THII_3125 PF04891 NifQ THII_3126 PF00111 2Fe-2S iron-sulfur cluster binding domain THII_3127 PF00111 2Fe-2S iron-sulfur cluster binding domain THII_3128 PF00258 Flavodoxin THII_3128 PF00753 Metallo-beta-lactamase superfamily THII_3129 PF00037 4Fe-4S binding domain THII_3130 PF02579 Dinitrogenase iron-molybdenum cofactor THII_3130 PF04055 Radical SAM superfamily THII_3133 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_3133 PF18113 Rubredoxin binding C-terminal domain THII_3134 PF05958 tRNA (Uracil-5-)-methyltransferase THII_3134 PF01938 TRAM domain THII_3138 PF00248 Aldo/keto reductase family THII_3139 PF00400 WD domain, G-beta repeat THII_3139 PF12894 Anaphase-promoting complex subunit 4 WD40 domain THII_3140 PF00400 WD domain, G-beta repeat THII_3140 PF12894 Anaphase-promoting complex subunit 4 WD40 domain THII_3141 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_3145 PF01627 Hpt domain THII_3145 PF00512 His Kinase A (phospho-acceptor) domain THII_3145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3145 PF00072 Response regulator receiver domain THII_3147 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB THII_3148 PF01381 Helix-turn-helix THII_3151 PF00953 Glycosyl transferase family 4 THII_3153 PF01435 Peptidase family M48 THII_3154 PF05685 Putative restriction endonuclease THII_3157 PF04174 A circularly permuted ATPgrasp THII_3161 PF04453 LPS transport system D THII_3161 PF03968 OstA-like protein THII_3162 PF01259 SAICAR synthetase THII_3165 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal THII_3165 PF01578 Cytochrome C assembly protein THII_3166 PF03100 CcmE THII_3167 PF04995 Heme exporter protein D (CcmD) THII_3169 PF00672 HAMP domain THII_3169 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_3169 PF02203 Tar ligand binding domain homologue THII_3173 PF00005 ABC transporter THII_3176 PF00132 Bacterial transferase hexapeptide (six repeats) THII_3177 PF00583 Acetyltransferase (GNAT) family THII_3177 PF00696 Amino acid kinase family THII_3179 PF01546 Peptidase family M20/M25/M40 THII_3179 PF07687 Peptidase dimerisation domain THII_3180 PF02777 Iron/manganese superoxide dismutases, C-terminal domain THII_3180 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain THII_3186 PF17944 Arginine decarboxylase C-terminal helical extension THII_3186 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THII_3186 PF17810 Arginine decarboxylase helical bundle domain THII_3187 PF02464 Competence-damaged protein THII_3192 PF09364 XFP N-terminal domain THII_3192 PF09363 XFP C-terminal domain THII_3192 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase THII_3194 PF03808 Glycosyl transferase WecB/TagA/CpsF family THII_3196 PF02310 B12 binding domain THII_3196 PF04055 Radical SAM superfamily THII_3198 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family THII_3200 PF03116 NQR2, RnfD, RnfE family THII_3203 PF05523 WxcM-like, C-terminal THII_3206 PF13419 Haloacid dehalogenase-like hydrolase THII_3208 PF03120 NAD-dependent DNA ligase OB-fold domain THII_3208 PF01653 NAD-dependent DNA ligase adenylation domain THII_3208 PF00533 BRCA1 C Terminus (BRCT) domain THII_3208 PF12826 Helix-hairpin-helix motif THII_3208 PF03119 NAD-dependent DNA ligase C4 zinc finger domain THII_3210 PF00672 HAMP domain THII_3210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_3210 PF02203 Tar ligand binding domain homologue THII_3211 PF05685 Putative restriction endonuclease THII_3213 PF00708 Acylphosphatase THII_3213 PF17788 HypF Kae1-like domain THII_3213 PF01300 Telomere recombination THII_3213 PF07503 HypF finger THII_3222 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain THII_3222 PF02785 Biotin carboxylase C-terminal domain THII_3222 PF00289 Biotin carboxylase, N-terminal domain THII_3223 PF00364 Biotin-requiring enzyme THII_3224 PF01220 Dehydroquinase class II THII_3225 PF03793 PASTA domain THII_3225 PF00069 Protein kinase domain THII_3228 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THII_3229 PF00873 AcrB/AcrD/AcrF family THII_3232 PF01713 Smr domain THII_3233 PF03900 Porphobilinogen deaminase, C-terminal domain THII_3233 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain THII_3234 PF13614 AAA domain THII_3240 PF06165 Glycosyltransferase family 36 THII_3240 PF10091 Putative glucoamylase THII_3240 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain THII_3247 PF05532 CsbD-like THII_3251 PF03918 Cytochrome C biogenesis protein THII_3258 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THII_3258 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_3261 PF04879 Molybdopterin oxidoreductase Fe4S4 domain THII_3261 PF00384 Molybdopterin oxidoreductase THII_3261 PF01568 Molydopterin dinucleotide binding domain THII_3262 PF12800 4Fe-4S binding domain THII_3262 PF13247 4Fe-4S dicluster domain THII_3270 PF05567 Neisseria PilC beta-propeller domain THII_3278 PF03462 PCRF domain THII_3278 PF00472 RF-1 domain THII_3279 PF03775 Septum formation inhibitor MinC, C-terminal domain THII_3279 PF05209 Septum formation inhibitor MinC, N-terminal domain THII_3280 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THII_3281 PF03776 Septum formation topological specificity factor MinE THII_3285 PF18152 DAHP synthase ferredoxin-like domain THII_3285 PF00793 DAHP synthetase I family THII_3286 PF07021 Methionine biosynthesis protein MetW THII_3286 PF00561 alpha/beta hydrolase fold THII_3287 PF00561 alpha/beta hydrolase fold THII_3288 PF00588 SpoU rRNA Methylase family THII_3289 PF04717 Type VI secretion system, phage-baseplate injector THII_3297 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system THII_3299 PF01923 Cobalamin adenosyltransferase THII_3300 PF00482 Type II secretion system (T2SS), protein F THII_3303 PF00578 AhpC/TSA family THII_3303 PF10417 C-terminal domain of 1-Cys peroxiredoxin THII_3307 PF05853 beta-keto acid cleavage enzyme THII_3308 PF00583 Acetyltransferase (GNAT) family THII_3310 PF03466 LysR substrate binding domain THII_3310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family THII_3311 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain THII_3311 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain THII_3312 PF00101 Ribulose bisphosphate carboxylase, small chain THII_3315 PF00374 Nickel-dependent hydrogenase THII_3316 PF08241 Methyltransferase domain THII_3319 PF01895 PhoU domain THII_3320 PF00005 ABC transporter THII_3321 PF00528 Binding-protein-dependent transport system inner membrane component THII_3322 PF00528 Binding-protein-dependent transport system inner membrane component THII_3323 PF01242 6-pyruvoyl tetrahydropterin synthase THII_3325 PF04247 Invasion gene expression up-regulator, SirB THII_3330 PF01894 Uncharacterised protein family UPF0047 THII_3331 PF04381 Putative exonuclease, RdgC THII_3338 PF01116 Fructose-bisphosphate aldolase class-II THII_3339 PF00224 Pyruvate kinase, barrel domain THII_3339 PF02887 Pyruvate kinase, alpha/beta domain THII_3340 PF00162 Phosphoglycerate kinase THII_3341 PF00471 Ribosomal protein L33 THII_3343 PF00809 Pterin binding enzyme THII_3343 PF02965 Vitamin B12 dependent methionine synthase, activation domain THII_3343 PF02574 Homocysteine S-methyltransferase THII_3343 PF02607 B12 binding domain THII_3343 PF02310 B12 binding domain THII_3345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3345 PF00512 His Kinase A (phospho-acceptor) domain THII_3345 PF01627 Hpt domain THII_3345 PF00072 Response regulator receiver domain THII_3345 PF00497 Bacterial extracellular solute-binding proteins, family 3 THII_3347 PF00027 Cyclic nucleotide-binding domain THII_3347 PF07885 Ion channel THII_3350 PF03781 Sulfatase-modifying factor enzyme 1 THII_3350 PF12867 DinB superfamily THII_3351 PF10017 Histidine-specific methyltransferase, SAM-dependent THII_3354 PF00445 Ribonuclease T2 family THII_3355 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system THII_3361 PF02629 CoA binding domain THII_3361 PF00549 CoA-ligase THII_3362 PF08442 ATP-grasp domain THII_3362 PF00549 CoA-ligase THII_3363 PF14437 MafB19-like deaminase THII_3364 PF03129 Anticodon binding domain THII_3364 PF13393 Histidyl-tRNA synthetase THII_3365 PF09976 Tetratricopeptide repeat-like domain THII_3366 PF13360 PQQ-like domain THII_3371 PF00394 Multicopper oxidase THII_3371 PF07732 Multicopper oxidase THII_3371 PF07731 Multicopper oxidase THII_3372 PF00672 HAMP domain THII_3372 PF07228 Stage II sporulation protein E (SpoIIE) THII_3379 PF12833 Helix-turn-helix domain THII_3379 PF14525 AraC-binding-like domain THII_3386 PF00155 Aminotransferase class I and II THII_3387 PF01842 ACT domain THII_3387 PF01817 Chorismate mutase type II THII_3387 PF00800 Prephenate dehydratase THII_3388 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases THII_3389 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region THII_3391 PF00106 short chain dehydrogenase THII_3395 PF00482 Type II secretion system (T2SS), protein F THII_3396 PF00155 Aminotransferase class I and II THII_3397 PF03447 Homoserine dehydrogenase, NAD binding domain THII_3397 PF01842 ACT domain THII_3397 PF00742 Homoserine dehydrogenase THII_3398 PF07963 Prokaryotic N-terminal methylation motif THII_3398 PF12019 Type II transport protein GspH THII_3401 PF03840 Preprotein translocase SecG subunit THII_3402 PF00121 Triosephosphate isomerase THII_3405 PF13419 Haloacid dehalogenase-like hydrolase THII_3411 PF00625 Guanylate kinase THII_3412 PF08340 Domain of unknown function (DUF1732) THII_3412 PF03755 YicC-like family, N-terminal region THII_3413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3413 PF18415 Histidine kinase receptor ArcB trans-membrane domain THII_3413 PF01627 Hpt domain THII_3413 PF00989 PAS fold THII_3413 PF00072 Response regulator receiver domain THII_3413 PF00512 His Kinase A (phospho-acceptor) domain THII_3415 PF00072 Response regulator receiver domain THII_3417 PF08448 PAS fold THII_3417 PF08447 PAS fold THII_3417 PF00990 Diguanylate cyclase, GGDEF domain THII_3417 PF00563 EAL domain THII_3420 PF01061 ABC-2 type transporter THII_3420 PF00498 FHA domain THII_3420 PF00005 ABC transporter THII_3421 PF01761 3-dehydroquinate synthase THII_3422 PF01202 Shikimate kinase THII_3428 PF12111 Polyribonucleotide phosphorylase C terminal THII_3428 PF10150 Ribonuclease E/G family THII_3428 PF00575 S1 RNA binding domain THII_3429 PF01479 S4 domain THII_3429 PF00849 RNA pseudouridylate synthase THII_3430 PF13419 Haloacid dehalogenase-like hydrolase THII_3431 PF06965 Na+/H+ antiporter 1 THII_3431 PF01343 Peptidase family S49 THII_3433 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THII_3434 PF02641 Uncharacterized ACR, COG1993 THII_3435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) THII_3436 PF02641 Uncharacterized ACR, COG1993 THII_3437 PF02403 Seryl-tRNA synthetase N-terminal domain THII_3437 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THII_3443 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_3443 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain THII_3444 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) THII_3444 PF00364 Biotin-requiring enzyme THII_3444 PF02817 e3 binding domain THII_3445 PF16870 2-oxoglutarate dehydrogenase C-terminal THII_3445 PF00676 Dehydrogenase E1 component THII_3445 PF02779 Transketolase, pyrimidine binding domain THII_3445 PF16078 2-oxoglutarate dehydrogenase N-terminus THII_3446 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain THII_3446 PF00056 lactate/malate dehydrogenase, NAD binding domain THII_3447 PF00072 Response regulator receiver domain THII_3447 PF00989 PAS fold THII_3447 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3447 PF18415 Histidine kinase receptor ArcB trans-membrane domain THII_3447 PF01627 Hpt domain THII_3447 PF00512 His Kinase A (phospho-acceptor) domain THII_3448 PF00512 His Kinase A (phospho-acceptor) domain THII_3448 PF00672 HAMP domain THII_3448 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3448 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_3448 PF01627 Hpt domain THII_3448 PF00072 Response regulator receiver domain THII_3449 PF00486 Transcriptional regulatory protein, C terminal THII_3449 PF00072 Response regulator receiver domain THII_3455 PF00842 Alanine racemase, C-terminal domain THII_3455 PF01168 Alanine racemase, N-terminal domain THII_3456 PF00772 DnaB-like helicase N terminal domain THII_3456 PF03796 DnaB-like helicase C terminal domain THII_3456 PF14528 LAGLIDADG-like domain THII_3457 PF01281 Ribosomal protein L9, N-terminal domain THII_3457 PF03948 Ribosomal protein L9, C-terminal domain THII_3458 PF01084 Ribosomal protein S18 THII_3459 PF01250 Ribosomal protein S6 THII_3461 PF04079 Segregation and condensation complex subunit ScpB THII_3462 PF02616 Segregation and condensation protein ScpA THII_3463 PF00579 tRNA synthetases class I (W and Y) THII_3464 PF02163 Peptidase family M50 THII_3465 PF01300 Telomere recombination THII_3466 PF02390 Putative methyltransferase THII_3467 PF00072 Response regulator receiver domain THII_3468 PF01627 Hpt domain THII_3468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3468 PF00072 Response regulator receiver domain THII_3468 PF00512 His Kinase A (phospho-acceptor) domain THII_3468 PF00497 Bacterial extracellular solute-binding proteins, family 3 THII_3469 PF00072 Response regulator receiver domain THII_3469 PF01627 Hpt domain THII_3469 PF00512 His Kinase A (phospho-acceptor) domain THII_3469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3470 PF01523 Putative modulator of DNA gyrase THII_3472 PF00186 Dihydrofolate reductase THII_3473 PF01258 Prokaryotic dksA/traR C4-type zinc finger THII_3476 PF05050 Methyltransferase FkbM domain THII_3480 PF00155 Aminotransferase class I and II THII_3484 PF04073 Aminoacyl-tRNA editing domain THII_3484 PF03129 Anticodon binding domain THII_3484 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) THII_3485 PF06832 Penicillin-Binding Protein C-terminus Family THII_3485 PF00905 Penicillin binding protein transpeptidase domain THII_3485 PF00912 Transglycosylase THII_3487 PF00534 Glycosyl transferases group 1 THII_3487 PF08323 Starch synthase catalytic domain THII_3489 PF01075 Glycosyltransferase family 9 (heptosyltransferase) THII_3491 PF08323 Starch synthase catalytic domain THII_3491 PF00534 Glycosyl transferases group 1 THII_3498 PF02817 e3 binding domain THII_3498 PF00364 Biotin-requiring enzyme THII_3498 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) THII_3499 PF00456 Transketolase, thiamine diphosphate binding domain THII_3499 PF17831 Pyruvate dehydrogenase E1 component middle domain THII_3509 PF04359 Protein of unknown function (DUF493) THII_3510 PF01063 Amino-transferase class IV THII_3511 PF07943 Penicillin-binding protein 5, C-terminal domain THII_3511 PF00768 D-alanyl-D-alanine carboxypeptidase THII_3512 PF05036 Sporulation related domain THII_3512 PF03330 Lytic transglycolase THII_3513 PF13406 Transglycosylase SLT domain THII_3514 PF01098 Cell cycle protein THII_3515 PF03717 Penicillin-binding Protein dimerisation domain THII_3515 PF00905 Penicillin binding protein transpeptidase domain THII_3516 PF04093 rod shape-determining protein MreD THII_3517 PF04085 rod shape-determining protein MreC THII_3519 PF02686 Glu-tRNAGln amidotransferase C subunit THII_3520 PF01425 Amidase THII_3521 PF02637 GatB domain THII_3521 PF02934 GatB/GatE catalytic domain THII_3527 PF00692 dUTPase THII_3528 PF10609 NUBPL iron-transfer P-loop NTPase THII_3529 PF00571 CBS domain THII_3530 PF02384 N-6 DNA Methylase THII_3532 PF01497 Periplasmic binding protein THII_3537 PF04228 Putative neutral zinc metallopeptidase THII_3541 PF00206 Lyase THII_3541 PF08328 Adenylosuccinate lyase C-terminal THII_3542 PF02401 LytB protein THII_3543 PF01455 HupF/HypC family THII_3544 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA THII_3546 PF00595 PDZ domain THII_3546 PF13180 PDZ domain THII_3547 PF00348 Polyprenyl synthetase THII_3552 PF07670 Nucleoside recognition THII_3552 PF07664 Ferrous iron transport protein B C terminus THII_3552 PF02421 Ferrous iron transport protein B THII_3552 PF17910 FeoB cytosolic helical domain THII_3562 PF00682 HMGL-like THII_3566 PF01061 ABC-2 type transporter THII_3567 PF00005 ABC transporter THII_3570 PF02470 MlaD protein THII_3571 PF13191 AAA ATPase domain THII_3571 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_3572 PF00180 Isocitrate/isopropylmalate dehydrogenase THII_3575 PF02463 RecF/RecN/SMC N terminal domain THII_3577 PF00733 Asparagine synthase THII_3577 PF13537 Glutamine amidotransferase domain THII_3580 PF01040 UbiA prenyltransferase family THII_3581 PF00089 Trypsin THII_3582 PF02618 YceG-like family THII_3583 PF00109 Beta-ketoacyl synthase, N-terminal domain THII_3583 PF02801 Beta-ketoacyl synthase, C-terminal domain THII_3584 PF00550 Phosphopantetheine attachment site THII_3586 PF00698 Acyl transferase domain THII_3587 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III THII_3587 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal THII_3588 PF02504 Fatty acid synthesis protein THII_3589 PF01783 Ribosomal L32p protein family THII_3590 PF02620 Large ribosomal RNA subunit accumulation protein YceD THII_3591 PF02545 Maf-like protein THII_3592 PF01750 Hydrogenase maturation protease THII_3595 PF00403 Heavy-metal-associated domain THII_3596 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase THII_3596 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase THII_3597 PF13361 UvrD-like helicase C-terminal domain THII_3597 PF00580 UvrD/REP helicase N-terminal domain THII_3598 PF13520 Amino acid permease THII_3603 PF04717 Type VI secretion system, phage-baseplate injector THII_3610 PF00809 Pterin binding enzyme THII_3612 PF06480 FtsH Extracellular THII_3612 PF17862 AAA+ lid domain THII_3612 PF01434 Peptidase family M41 THII_3612 PF00004 ATPase family associated with various cellular activities (AAA) THII_3613 PF01728 FtsJ-like methyltransferase THII_3614 PF09308 LuxQ, periplasmic THII_3614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3614 PF00512 His Kinase A (phospho-acceptor) domain THII_3614 PF00072 Response regulator receiver domain THII_3615 PF01966 HD domain THII_3615 PF01909 Nucleotidyltransferase domain THII_3615 PF08335 GlnD PII-uridylyltransferase THII_3616 PF00149 Calcineurin-like phosphoesterase THII_3617 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD THII_3618 PF00107 Zinc-binding dehydrogenase THII_3618 PF08240 Alcohol dehydrogenase GroES-like domain THII_3621 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_3621 PF00672 HAMP domain THII_3622 PF00211 Adenylate and Guanylate cyclase catalytic domain THII_3623 PF00218 Indole-3-glycerol phosphate synthase THII_3624 PF02885 Glycosyl transferase family, helical bundle domain THII_3624 PF00591 Glycosyl transferase family, a/b domain THII_3625 PF02080 TrkA-C domain THII_3625 PF03600 Citrate transporter THII_3628 PF01138 3' exoribonuclease family, domain 1 THII_3628 PF03725 3' exoribonuclease family, domain 2 THII_3629 PF00226 DnaJ domain THII_3629 PF01556 DnaJ C terminal domain THII_3629 PF00684 DnaJ central domain THII_3630 PF03952 Enolase, N-terminal domain THII_3630 PF00113 Enolase, C-terminal TIM barrel domain THII_3631 PF00793 DAHP synthetase I family THII_3633 PF01965 DJ-1/PfpI family THII_3634 PF01380 SIS domain THII_3639 PF04349 Periplasmic glucan biosynthesis protein, MdoG THII_3642 PF04389 Peptidase family M28 THII_3648 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3648 PF00512 His Kinase A (phospho-acceptor) domain THII_3648 PF00072 Response regulator receiver domain THII_3648 PF09308 LuxQ, periplasmic THII_3654 PF13186 Iron-sulfur cluster-binding domain THII_3654 PF04055 Radical SAM superfamily THII_3656 PF00582 Universal stress protein family THII_3658 PF01435 Peptidase family M48 THII_3659 PF00929 Exonuclease THII_3660 PF03853 YjeF-related protein N-terminus THII_3660 PF01256 Carbohydrate kinase THII_3661 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE THII_3662 PF01370 NAD dependent epimerase/dehydratase family THII_3665 PF01464 Transglycosylase SLT domain THII_3665 PF10145 Phage-related minor tail protein THII_3665 PF01551 Peptidase family M23 THII_3671 PF01609 Transposase DDE domain THII_3672 PF13340 Putative transposase of IS4/5 family (DUF4096) THII_3675 PF01924 Hydrogenase formation hypA family THII_3677 PF01594 AI-2E family transporter THII_3682 PF01627 Hpt domain THII_3682 PF00072 Response regulator receiver domain THII_3682 PF00512 His Kinase A (phospho-acceptor) domain THII_3682 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3682 PF00672 HAMP domain THII_3682 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) THII_3690 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster THII_3690 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_3692 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain THII_3693 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg THII_3693 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II THII_3700 PF04715 Anthranilate synthase component I, N terminal region THII_3700 PF00425 chorismate binding enzyme THII_3701 PF13419 Haloacid dehalogenase-like hydrolase THII_3702 PF00834 Ribulose-phosphate 3 epimerase family THII_3705 PF05257 CHAP domain THII_3705 PF03738 Glutathionylspermidine synthase preATP-grasp THII_3706 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) THII_3708 PF06969 HemN C-terminal domain THII_3708 PF04055 Radical SAM superfamily THII_3712 PF02541 Ppx/GppA phosphatase family THII_3715 PF00762 Ferrochelatase THII_3716 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain THII_3716 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THII_3719 PF16861 Carbamoyltransferase C-terminus THII_3719 PF02543 Carbamoyltransferase N-terminus THII_3722 PF00512 His Kinase A (phospho-acceptor) domain THII_3722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3722 PF00672 HAMP domain THII_3722 PF17149 Periplasmic sensor domain found in signal transduction proteins THII_3722 PF01627 Hpt domain THII_3722 PF00072 Response regulator receiver domain THII_3724 PF01180 Dihydroorotate dehydrogenase THII_3725 PF17674 HHH domain THII_3725 PF00575 S1 RNA binding domain THII_3725 PF09371 Tex-like protein N-terminal domain THII_3725 PF16921 Tex protein YqgF-like domain THII_3726 PF01555 DNA methylase THII_3728 PF01493 GXGXG motif THII_3728 PF04898 Glutamate synthase central domain THII_3728 PF01645 Conserved region in glutamate synthase THII_3728 PF00310 Glutamine amidotransferases class-II THII_3733 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB THII_3734 PF00072 Response regulator receiver domain THII_3734 PF09308 LuxQ, periplasmic THII_3734 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3734 PF00512 His Kinase A (phospho-acceptor) domain THII_3736 PF00300 Histidine phosphatase superfamily (branch 1) THII_3737 PF02540 NAD synthase THII_3737 PF00958 GMP synthase C terminal domain THII_3737 PF00117 Glutamine amidotransferase class-I THII_3738 PF00639 PPIC-type PPIASE domain THII_3739 PF00174 Oxidoreductase molybdopterin binding domain THII_3740 PF01794 Ferric reductase like transmembrane component THII_3741 PF01648 4'-phosphopantetheinyl transferase superfamily THII_3743 PF02602 Uroporphyrinogen-III synthase HemD THII_3744 PF17760 UvrA interaction domain THII_3744 PF17755 UvrA DNA-binding domain THII_3745 PF00561 alpha/beta hydrolase fold THII_3756 PF13358 DDE superfamily endonuclease THII_3761 PF17757 UvrB interaction domain THII_3761 PF00271 Helicase conserved C-terminal domain THII_3761 PF04851 Type III restriction enzyme, res subunit THII_3761 PF12344 Ultra-violet resistance protein B THII_3761 PF02151 UvrB/uvrC motif THII_3762 PF00155 Aminotransferase class I and II THII_3765 PF01134 Glucose inhibited division protein A THII_3765 PF13932 GidA associated domain THII_3766 PF17284 Spermidine synthase tetramerisation domain THII_3767 PF03167 Uracil DNA glycosylase superfamily THII_3768 PF00990 Diguanylate cyclase, GGDEF domain THII_3768 PF00563 EAL domain THII_3768 PF03707 Bacterial signalling protein N terminal repeat THII_3773 PF01546 Peptidase family M20/M25/M40 THII_3773 PF07687 Peptidase dimerisation domain THII_3775 PF00194 Eukaryotic-type carbonic anhydrase THII_3778 PF00082 Subtilase family THII_3778 PF05922 Peptidase inhibitor I9 THII_3779 PF00300 Histidine phosphatase superfamily (branch 1) THII_3780 PF01551 Peptidase family M23 THII_3781 PF13180 PDZ domain THII_3781 PF03572 Peptidase family S41 THII_3782 PF01965 DJ-1/PfpI family THII_3783 PF00285 Citrate synthase, C-terminal domain THII_3784 PF10605 3HB-oligomer hydrolase (3HBOH) THII_3790 PF03793 PASTA domain THII_3790 PF00069 Protein kinase domain THII_3792 PF11849 Domain of unknown function (DUF3369) THII_3793 PF01590 GAF domain THII_3793 PF00563 EAL domain THII_3793 PF00360 Phytochrome region THII_3793 PF00990 Diguanylate cyclase, GGDEF domain THII_3798 PF07992 Pyridine nucleotide-disulphide oxidoreductase THII_3799 PF01012 Electron transfer flavoprotein domain THII_3799 PF00766 Electron transfer flavoprotein FAD-binding domain THII_3800 PF01012 Electron transfer flavoprotein domain THII_3801 PF02463 RecF/RecN/SMC N terminal domain THII_3802 PF04480 Protein of unknown function (DUF559) THII_3806 PF00999 Sodium/hydrogen exchanger family THII_3807 PF01329 Pterin 4 alpha carbinolamine dehydratase THII_3809 PF07685 CobB/CobQ-like glutamine amidotransferase domain THII_3809 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain THII_3810 PF00691 OmpA family THII_3816 PF00474 Sodium:solute symporter family THII_3817 PF04341 Protein of unknown function, DUF485 THII_3819 PF01370 NAD dependent epimerase/dehydratase family THII_3821 PF00717 Peptidase S24-like THII_3821 PF01381 Helix-turn-helix THII_3822 PF01118 Semialdehyde dehydrogenase, NAD binding domain THII_3822 PF02774 Semialdehyde dehydrogenase, dimerisation domain THII_3825 PF13188 PAS domain THII_3825 PF00072 Response regulator receiver domain THII_3825 PF08448 PAS fold THII_3825 PF00512 His Kinase A (phospho-acceptor) domain THII_3825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3826 PF04186 FxsA cytoplasmic membrane protein THII_3827 PF03091 CutA1 divalent ion tolerance protein THII_3828 PF11412 Disulphide bond corrector protein DsbC THII_3828 PF02683 Cytochrome C biogenesis protein transmembrane region THII_3829 PF00578 AhpC/TSA family THII_3833 PF00072 Response regulator receiver domain THII_3834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3834 PF00512 His Kinase A (phospho-acceptor) domain THII_3834 PF01627 Hpt domain THII_3834 PF00989 PAS fold THII_3834 PF00072 Response regulator receiver domain THII_3834 PF00497 Bacterial extracellular solute-binding proteins, family 3 THII_3835 PF00072 Response regulator receiver domain THII_3835 PF00497 Bacterial extracellular solute-binding proteins, family 3 THII_3835 PF00989 PAS fold THII_3835 PF01627 Hpt domain THII_3835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase THII_3835 PF00512 His Kinase A (phospho-acceptor) domain THII_3836 PF00210 Ferritin-like domain THII_3838 PF01327 Polypeptide deformylase THII_3843 PF00114 Pilin (bacterial filament) THII_3843 PF07963 Prokaryotic N-terminal methylation motif THII_3850 PF00380 Ribosomal protein S9/S16 THII_3851 PF00572 Ribosomal protein L13 THII_3857 PF00486 Transcriptional regulatory protein, C terminal THII_3857 PF00072 Response regulator receiver domain THII_3858 PF02910 Fumarate reductase flavoprotein C-term THII_3858 PF00890 FAD binding domain THII_3860 PF13183 4Fe-4S dicluster domain THII_3860 PF13085 2Fe-2S iron-sulfur cluster binding domain THII_3861 PF01551 Peptidase family M23 THII_3861 PF10145 Phage-related minor tail protein THII_3861 PF01464 Transglycosylase SLT domain THII_3864 PF01264 Chorismate synthase THII_3866 PF00633 Helix-hairpin-helix motif THII_3866 PF00730 HhH-GPD superfamily base excision DNA repair protein THII_3866 PF14815 NUDIX domain THII_3867 PF04362 Bacterial Fe(2+) trafficking THII_3869 PF02261 Aspartate decarboxylase THII_3870 PF00575 S1 RNA binding domain THII_3870 PF10150 Ribonuclease E/G family THII_3872 PF00072 Response regulator receiver domain THII_3872 PF00158 Sigma-54 interaction domain THII_3872 PF02954 Bacterial regulatory protein, Fis family THII_3873 PF01921 tRNA synthetases class I (K) THII_3879 PF00886 Ribosomal protein S16 THII_3880 PF01782 RimM N-terminal domain THII_3880 PF05239 PRC-barrel domain THII_3881 PF01746 tRNA (Guanine-1)-methyltransferase THII_3882 PF01245 Ribosomal protein L19 THII_3883 PF10411 Disulfide bond isomerase protein N-terminus THII_3883 PF13098 Thioredoxin-like domain THII_3889 PF00990 Diguanylate cyclase, GGDEF domain THII_3889 PF03707 Bacterial signalling protein N terminal repeat THII_3889 PF00563 EAL domain THII_3891 PF16200 C-terminal region of band_7 THII_3891 PF01145 SPFH domain / Band 7 family THII_3892 PF01043 SecA preprotein cross-linking domain THII_3892 PF07516 SecA Wing and Scaffold domain THII_3892 PF02810 SEC-C motif THII_3892 PF07517 SecA DEAD-like domain THII_3895 PF00583 Acetyltransferase (GNAT) family THII_3896 PF03167 Uracil DNA glycosylase superfamily THII_3897 PF08502 LeuA allosteric (dimerisation) domain THII_3897 PF00682 HMGL-like THII_3898 PF02566 OsmC-like protein THII_3899 PF02675 S-adenosylmethionine decarboxylase THII_3900 PF00753 Metallo-beta-lactamase superfamily THII_3902 PF00072 Response regulator receiver domain THII_3904 PF03309 Type III pantothenate kinase THII_3905 PF02237 Biotin protein ligase C terminal domain THII_3905 PF03099 Biotin/lipoate A/B protein ligase family THII_3906 PF01467 Cytidylyltransferase-like THII_3910 PF00005 ABC transporter THII_3910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region THII_3911 PF00563 EAL domain THII_3911 PF00990 Diguanylate cyclase, GGDEF domain THII_3911 PF03707 Bacterial signalling protein N terminal repeat THII_3912 PF03279 Bacterial lipid A biosynthesis acyltransferase THII_3913 PF00691 OmpA family THII_3915 PF01773 Na+ dependent nucleoside transporter N-terminus THII_3915 PF07662 Na+ dependent nucleoside transporter C-terminus THII_3915 PF07670 Nucleoside recognition THII_3921 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family THII_3926 PF02660 Glycerol-3-phosphate acyltransferase THII_3927 PF00905 Penicillin binding protein transpeptidase domain THII_3927 PF00912 Transglycosylase THII_3927 PF17092 Penicillin-binding protein OB-like domain THII_3933 PF07660 Secretin and TonB N terminus short domain THII_3933 PF11741 AMIN domain THII_3933 PF00263 Bacterial type II and III secretion system protein THII_3933 PF03958 Bacterial type II/III secretion system short domain THII_3937 PF02769 AIR synthase related protein, C-terminal domain THII_3937 PF00586 AIR synthase related protein, N-terminal domain THII_3938 PF00551 Formyl transferase THII_3941 PF00764 Arginosuccinate synthase THII_3944 PF00873 AcrB/AcrD/AcrF family THII_3945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion THII_3945 PF00529 HlyD membrane-fusion protein of T1SS THII_3946 PF00672 HAMP domain THII_3946 PF02203 Tar ligand binding domain homologue THII_3946 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain THII_3947 PF01510 N-acetylmuramoyl-L-alanine amidase THII_3950 PF04012 PspA/IM30 family