THII_0020	PWY-5667	CDP-diacylglycerol biosynthesis I
THII_0020	PWY-5981	CDP-diacylglycerol biosynthesis III
THII_0020	PWY-7817	THII_0020
THII_0031	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
THII_0032	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THII_0034	PWY-7205	CMP phosphorylation
THII_0038	PWY-5686	UMP biosynthesis
THII_0038	PWY-7790	THII_0038
THII_0038	PWY-7791	THII_0038
THII_0041	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
THII_0058	PWY-3341	L-proline biosynthesis III
THII_0058	PWY-4981	L-proline biosynthesis II (from arginine)
THII_0058	PWY-6344	L-ornithine degradation II (Stickland reaction)
THII_0068	PWY-5686	UMP biosynthesis
THII_0068	PWY-7790	THII_0068
THII_0068	PWY-7791	THII_0068
THII_0069	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THII_0069	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
THII_0076	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THII_0076	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THII_0095	PWY-2941	L-lysine biosynthesis II
THII_0095	PWY-2942	L-lysine biosynthesis III
THII_0095	PWY-5097	L-lysine biosynthesis VI
THII_0102	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THII_0104	PWY-5057	L-valine degradation II
THII_0104	PWY-5076	L-leucine degradation III
THII_0104	PWY-5078	L-isoleucine degradation II
THII_0104	PWY-5101	L-isoleucine biosynthesis II
THII_0104	PWY-5103	L-isoleucine biosynthesis III
THII_0104	PWY-5104	L-isoleucine biosynthesis IV
THII_0104	PWY-5108	L-isoleucine biosynthesis V
THII_0104	PWY-7767	THII_0104
THII_0113	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
THII_0113	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THII_0113	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
THII_0120	PWY-7942	THII_0120
THII_0124	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THII_0124	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THII_0124	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THII_0151	PWY-7851	THII_0151
THII_0152	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THII_0152	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
THII_0181	PWY-7980	THII_0181
THII_0184	PWY-2722	trehalose degradation IV
THII_0184	PWY-2723	trehalose degradation V
THII_0184	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THII_0184	PWY-5661	GDP-glucose biosynthesis
THII_0184	PWY-621	sucrose degradation III (sucrose invertase)
THII_0184	PWY-7238	sucrose biosynthesis II
THII_0184	PWY-7385	1,3-propanediol biosynthesis (engineered)
THII_0196	PWY-2941	L-lysine biosynthesis II
THII_0196	PWY-2942	L-lysine biosynthesis III
THII_0196	PWY-5097	L-lysine biosynthesis VI
THII_0196	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
THII_0196	PWY-6559	spermidine biosynthesis II
THII_0196	PWY-6562	norspermidine biosynthesis
THII_0196	PWY-7153	grixazone biosynthesis
THII_0196	PWY-7977	THII_0196
THII_0209	PWY-2941	L-lysine biosynthesis II
THII_0209	PWY-5097	L-lysine biosynthesis VI
THII_0214	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_0215	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THII_0215	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THII_0215	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THII_0215	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THII_0215	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_0215	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_0215	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
THII_0215	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
THII_0216	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THII_0216	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THII_0216	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THII_0216	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THII_0216	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_0216	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_0216	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
THII_0216	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
THII_0217	PWY-4381	fatty acid biosynthesis initiation I
THII_0217	PWY-5743	3-hydroxypropanoate cycle
THII_0217	PWY-5744	glyoxylate assimilation
THII_0217	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
THII_0217	PWY-6722	candicidin biosynthesis
THII_0256	PWY-5941	glycogen degradation II (eukaryotic)
THII_0256	PWY-6731	starch degradation III
THII_0256	PWY-6737	starch degradation V
THII_0256	PWY-7238	sucrose biosynthesis II
THII_0257	PWY-381	nitrate reduction II (assimilatory)
THII_0257	PWY-5675	nitrate reduction V (assimilatory)
THII_0257	PWY-6549	L-glutamine biosynthesis III
THII_0257	PWY-6963	ammonia assimilation cycle I
THII_0257	PWY-6964	ammonia assimilation cycle II
THII_0266	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
THII_0266	PWY-622	starch biosynthesis
THII_0266	PWY-7900	THII_0266
THII_0285	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
THII_0285	PWY-5739	GDP-D-perosamine biosynthesis
THII_0285	PWY-5740	GDP-L-colitose biosynthesis
THII_0285	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
THII_0285	PWY-7573	GDP-mycosamine biosynthesis
THII_0286	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
THII_0335	PWY-3781	aerobic respiration I (cytochrome c)
THII_0335	PWY-4521	arsenite oxidation I (respiratory)
THII_0335	PWY-6692	Fe(II) oxidation
THII_0335	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THII_0351	PWY-43	putrescine biosynthesis II
THII_0353	PWY-43	putrescine biosynthesis II
THII_0359	PWY-7560	methylerythritol phosphate pathway II
THII_0360	PWY-7560	methylerythritol phosphate pathway II
THII_0366	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THII_0366	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THII_0366	PWY-7953	THII_0366
THII_0379	PWY-1042	glycolysis IV (plant cytosol)
THII_0379	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THII_0379	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_0379	PWY-7385	1,3-propanediol biosynthesis (engineered)
THII_0392	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THII_0392	PWY-6148	tetrahydromethanopterin biosynthesis
THII_0392	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
THII_0392	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THII_0393	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THII_0393	PWY-6148	tetrahydromethanopterin biosynthesis
THII_0393	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
THII_0393	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THII_0393	PWY-7852	THII_0393
THII_0393	PWY-7853	THII_0393
THII_0418	PWY-7801	THII_0418
THII_0419	PWY-7802	THII_0419
THII_0420	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
THII_0420	PWY-2201	folate transformations I
THII_0420	PWY-3841	folate transformations II
THII_0420	PWY-5030	L-histidine degradation III
THII_0420	PWY-5497	purine nucleobases degradation II (anaerobic)
THII_0420	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
THII_0420	PWY-7909	THII_0420
THII_0430	PWY-3781	aerobic respiration I (cytochrome c)
THII_0430	PWY-4302	aerobic respiration III (alternative oxidase pathway)
THII_0430	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THII_0430	PWY-5690	TCA cycle II (plants and fungi)
THII_0430	PWY-6728	methylaspartate cycle
THII_0430	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_0430	PWY-7254	TCA cycle VII (acetate-producers)
THII_0430	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THII_0431	PWY-3781	aerobic respiration I (cytochrome c)
THII_0431	PWY-4302	aerobic respiration III (alternative oxidase pathway)
THII_0431	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THII_0431	PWY-5690	TCA cycle II (plants and fungi)
THII_0431	PWY-6728	methylaspartate cycle
THII_0431	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_0431	PWY-7254	TCA cycle VII (acetate-producers)
THII_0431	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THII_0434	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THII_0434	PWY-6855	chitin degradation I (archaea)
THII_0434	PWY-6906	chitin derivatives degradation
THII_0436	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THII_0461	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
THII_0461	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
THII_0461	PWY-7717	THII_0461
THII_0461	PWY-7733	THII_0461
THII_0461	PWY-7734	THII_0461
THII_0461	PWY-7765	THII_0461
THII_0463	PWY-1281	sulfoacetaldehyde degradation I
THII_0463	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
THII_0463	PWY-5482	pyruvate fermentation to acetate II
THII_0463	PWY-5485	pyruvate fermentation to acetate IV
THII_0463	PWY-5497	purine nucleobases degradation II (anaerobic)
THII_0463	PWY-6637	sulfolactate degradation II
THII_0463	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THII_0464	PWY-7980	THII_0464
THII_0515	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THII_0533	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_0534	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_0534	PWY-7118	chitin degradation to ethanol
THII_0534	PWY-7294	xylose degradation IV
THII_0534	PWY-7295	L-arabinose degradation IV
THII_0534	PWY-7854	THII_0534
THII_0538	PWY-5340	sulfate activation for sulfonation
THII_0558	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_0558	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THII_0562	PWY-5269	cardiolipin biosynthesis II
THII_0562	PWY-5668	cardiolipin biosynthesis I
THII_0562	PWY-7817	THII_0562
THII_0579	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THII_0579	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THII_0579	PWY-5989	stearate biosynthesis II (bacteria and plants)
THII_0579	PWY-5994	palmitate biosynthesis I (animals and fungi)
THII_0579	PWY-6113	superpathway of mycolate biosynthesis
THII_0579	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THII_0579	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THII_0579	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THII_0579	PWY-7663	gondoate biosynthesis (anaerobic)
THII_0579	PWY-7664	oleate biosynthesis IV (anaerobic)
THII_0579	PWY-7858	THII_0579
THII_0579	PWYG-321	mycolate biosynthesis
THII_0587	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
THII_0587	PWY-7784	THII_0587
THII_0594	PWY-2161	folate polyglutamylation
THII_0595	PWY-1622	formaldehyde assimilation I (serine pathway)
THII_0595	PWY-181	photorespiration
THII_0595	PWY-2161	folate polyglutamylation
THII_0595	PWY-2201	folate transformations I
THII_0595	PWY-3661	glycine betaine degradation I
THII_0595	PWY-3661-1	glycine betaine degradation II (mammalian)
THII_0595	PWY-3841	folate transformations II
THII_0595	PWY-5497	purine nucleobases degradation II (anaerobic)
THII_0596	PWY-7991	THII_0596
THII_0605	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THII_0611	PWY-6683	sulfate reduction III (assimilatory)
THII_0612	PWY-5306	superpathway of thiosulfate metabolism (<i>Desulfovibrio sulfodismutans</i>)
THII_0612	PWY-5360	superpathway of tetrathionate reduction (<i>Salmonella typhimurium</i>)
THII_0612	PWY-6683	sulfate reduction III (assimilatory)
THII_0647	PWY-5686	UMP biosynthesis
THII_0647	PWY-7790	THII_0647
THII_0647	PWY-7791	THII_0647
THII_0669	PWY-181	photorespiration
THII_0670	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
THII_0670	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
THII_0670	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
THII_0670	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
THII_0670	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
THII_0670	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
THII_0670	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
THII_0670	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
THII_0670	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
THII_0670	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
THII_0694	PWY-7883	THII_0694
THII_0703	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THII_0704	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THII_0705	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
THII_0708	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_0708	PWY-5686	UMP biosynthesis
THII_0708	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THII_0708	PWY-7790	THII_0708
THII_0708	PWY-7791	THII_0708
THII_0709	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_0709	PWY-5686	UMP biosynthesis
THII_0709	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THII_0709	PWY-7790	THII_0709
THII_0709	PWY-7791	THII_0709
THII_0713	PWY-4981	L-proline biosynthesis II (from arginine)
THII_0713	PWY-4984	urea cycle
THII_0713	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THII_0723	PWY-3841	folate transformations II
THII_0723	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THII_0723	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_0723	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THII_0723	PWY-7199	pyrimidine deoxyribonucleosides salvage
THII_0723	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THII_0726	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THII_0752	PWY-4983	L-citrulline-nitric oxide cycle
THII_0752	PWY-4984	urea cycle
THII_0752	PWY-5	canavanine biosynthesis
THII_0752	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_0752	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THII_0754	PWY-7805	THII_0754
THII_0754	PWY-7807	THII_0754
THII_0764	PWY-6703	preQ<sub>0</sub> biosynthesis
THII_0770	PWY-5723	Rubisco shunt
THII_0784	PWY-1042	glycolysis IV (plant cytosol)
THII_0784	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_0784	PWY-6901	superpathway of glucose and xylose degradation
THII_0784	PWY-7003	glycerol degradation to butanol
THII_0785	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THII_0785	PWY-5723	Rubisco shunt
THII_0785	PWY-6891	thiazole biosynthesis II (Bacillus)
THII_0785	PWY-6892	thiazole biosynthesis I (E. coli)
THII_0785	PWY-6901	superpathway of glucose and xylose degradation
THII_0785	PWY-7560	methylerythritol phosphate pathway II
THII_0824	PWY-2201	folate transformations I
THII_0824	PWY-3841	folate transformations II
THII_0824	PWY-7977	THII_0824
THII_0837	PWY-5676	acetyl-CoA fermentation to butanoate II
THII_0837	PWY-5741	ethylmalonyl-CoA pathway
THII_0837	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
THII_0837	PWY-7948	THII_0837
THII_0853	PWY-3781	aerobic respiration I (cytochrome c)
THII_0853	PWY-6692	Fe(II) oxidation
THII_0853	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
THII_0853	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THII_0862	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THII_0862	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THII_0862	PWY-5989	stearate biosynthesis II (bacteria and plants)
THII_0862	PWY-6113	superpathway of mycolate biosynthesis
THII_0862	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THII_0862	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THII_0862	PWY-7663	gondoate biosynthesis (anaerobic)
THII_0862	PWY-7664	oleate biosynthesis IV (anaerobic)
THII_0862	PWY-7858	THII_0862
THII_0862	PWYG-321	mycolate biosynthesis
THII_0863	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THII_0863	PWY-5723	Rubisco shunt
THII_0891	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THII_0903	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_0903	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_0920	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
THII_0929	PWY-7851	THII_0929
THII_0931	PWY-6703	preQ<sub>0</sub> biosynthesis
THII_0936	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THII_0939	PWY-5669	phosphatidylethanolamine biosynthesis I
THII_0952	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THII_0961	PWY-5316	nicotine biosynthesis
THII_0961	PWY-7342	superpathway of nicotine biosynthesis
THII_0980	PWY-6700	queuosine biosynthesis
THII_0982	PWY-5194	siroheme biosynthesis
THII_0982	PWY-5196	factor 430 biosynthesis
THII_0982	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
THII_1031	PWY-7396	butanol and isobutanol biosynthesis (engineered)
THII_1032	PWY-2941	L-lysine biosynthesis II
THII_1032	PWY-2942	L-lysine biosynthesis III
THII_1032	PWY-5097	L-lysine biosynthesis VI
THII_1032	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_1032	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
THII_1032	PWY-6559	spermidine biosynthesis II
THII_1032	PWY-6562	norspermidine biosynthesis
THII_1032	PWY-7153	grixazone biosynthesis
THII_1032	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THII_1032	PWY-7977	THII_1032
THII_1038	PWY-6123	inosine-5'-phosphate biosynthesis I
THII_1038	PWY-7234	inosine-5'-phosphate biosynthesis III
THII_1057	PWY-5278	sulfite oxidation III
THII_1057	PWY-5340	sulfate activation for sulfonation
THII_1057	PWY-6683	sulfate reduction III (assimilatory)
THII_1057	PWY-6932	selenate reduction
THII_1100	PWY-5392	reductive TCA cycle II
THII_1100	PWY-5537	pyruvate fermentation to acetate V
THII_1100	PWY-5538	pyruvate fermentation to acetate VI
THII_1100	PWY-5690	TCA cycle II (plants and fungi)
THII_1100	PWY-5913	TCA cycle VI (obligate autotrophs)
THII_1100	PWY-6728	methylaspartate cycle
THII_1100	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_1100	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THII_1133	PWY-3801	sucrose degradation II (sucrose synthase)
THII_1133	PWY-6527	stachyose degradation
THII_1133	PWY-7238	sucrose biosynthesis II
THII_1133	PWY-7343	UDP-glucose biosynthesis
THII_1133	PWY-7817	THII_1133
THII_1154	PWY-7396	butanol and isobutanol biosynthesis (engineered)
THII_1154	PWY-7806	THII_1154
THII_1160	PWY-6700	queuosine biosynthesis
THII_1195	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_1195	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THII_1195	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_1196	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THII_1196	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THII_1196	PWY-7953	THII_1196
THII_1212	PWY-6936	seleno-amino acid biosynthesis
THII_1219	PWY-7980	THII_1219
THII_1245	PWY-7805	THII_1245
THII_1245	PWY-7807	THII_1245
THII_1250	PWY-6700	queuosine biosynthesis
THII_1258	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THII_1258	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
THII_1275	PWY-3821	galactose degradation III
THII_1275	PWY-6317	galactose degradation I (Leloir pathway)
THII_1275	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
THII_1275	PWY-6527	stachyose degradation
THII_1275	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
THII_1275	PWY-7344	UDP-D-galactose biosynthesis
THII_1276	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
THII_1278	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
THII_1278	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
THII_1278	PWY-7766	THII_1278
THII_1281	PWY-1281	sulfoacetaldehyde degradation I
THII_1281	PWY-5482	pyruvate fermentation to acetate II
THII_1281	PWY-5485	pyruvate fermentation to acetate IV
THII_1281	PWY-5497	purine nucleobases degradation II (anaerobic)
THII_1281	PWY-6637	sulfolactate degradation II
THII_1296	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THII_1296	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THII_1296	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THII_1296	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
THII_1310	PWY-6749	CMP-legionaminate biosynthesis I
THII_1311	PWY-6749	CMP-legionaminate biosynthesis I
THII_1317	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
THII_1317	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THII_1346	PWY-3221	dTDP-L-rhamnose biosynthesis II
THII_1346	PWY-6808	dTDP-D-forosamine biosynthesis
THII_1346	PWY-6942	dTDP-D-desosamine biosynthesis
THII_1346	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
THII_1346	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
THII_1346	PWY-6974	dTDP-L-olivose biosynthesis
THII_1346	PWY-6976	dTDP-L-mycarose biosynthesis
THII_1346	PWY-7104	dTDP-L-megosamine biosynthesis
THII_1346	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
THII_1346	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
THII_1346	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
THII_1346	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
THII_1346	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
THII_1346	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
THII_1346	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
THII_1346	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
THII_1346	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
THII_1346	PWY-7688	THII_1346
THII_1346	PWY-7814	THII_1346
THII_1347	PWY-3221	dTDP-L-rhamnose biosynthesis II
THII_1347	PWY-6808	dTDP-D-forosamine biosynthesis
THII_1347	PWY-6942	dTDP-D-desosamine biosynthesis
THII_1347	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
THII_1347	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
THII_1347	PWY-6974	dTDP-L-olivose biosynthesis
THII_1347	PWY-6976	dTDP-L-mycarose biosynthesis
THII_1347	PWY-7104	dTDP-L-megosamine biosynthesis
THII_1347	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
THII_1347	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
THII_1347	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
THII_1347	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
THII_1347	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
THII_1347	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
THII_1347	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
THII_1347	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
THII_1347	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
THII_1347	PWY-7688	THII_1347
THII_1347	PWY-7814	THII_1347
THII_1378	PWY-7884	THII_1378
THII_1381	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_1382	PWY-6502	oxidized GTP and dGTP detoxification
THII_1382	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
THII_1382	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
THII_1382	PWY-6897	thiamin salvage II
THII_1382	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
THII_1382	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
THII_1382	PWY-7356	thiamin salvage IV (yeast)
THII_1382	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
THII_1397	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THII_1397	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
THII_1397	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THII_1397	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_1397	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
THII_1397	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THII_1397	PWY-7205	CMP phosphorylation
THII_1397	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THII_1397	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_1397	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THII_1397	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_1397	PWY-7224	purine deoxyribonucleosides salvage
THII_1397	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
THII_1397	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
THII_1404	PWY-6823	molybdenum cofactor biosynthesis
THII_1430	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
THII_1430	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
THII_1430	PWY-6896	thiamin salvage I
THII_1430	PWY-6897	thiamin salvage II
THII_1441	PWY-3801	sucrose degradation II (sucrose synthase)
THII_1441	PWY-5054	sorbitol biosynthesis I
THII_1441	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
THII_1441	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THII_1441	PWY-5659	GDP-mannose biosynthesis
THII_1441	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THII_1441	PWY-621	sucrose degradation III (sucrose invertase)
THII_1441	PWY-622	starch biosynthesis
THII_1441	PWY-6981	chitin biosynthesis
THII_1441	PWY-6992	1,5-anhydrofructose degradation
THII_1441	PWY-7238	sucrose biosynthesis II
THII_1441	PWY-7347	sucrose biosynthesis III
THII_1441	PWY-7385	1,3-propanediol biosynthesis (engineered)
THII_1442	PWY-5941	glycogen degradation II (eukaryotic)
THII_1442	PWY-6724	starch degradation II
THII_1442	PWY-6737	starch degradation V
THII_1442	PWY-7238	sucrose biosynthesis II
THII_1444	PWY-622	starch biosynthesis
THII_1444	PWY-7902	THII_1444
THII_1465	PWY-6891	thiazole biosynthesis II (Bacillus)
THII_1465	PWY-6892	thiazole biosynthesis I (E. coli)
THII_1465	PWY-7560	methylerythritol phosphate pathway II
THII_1466	PWY-5663	tetrahydrobiopterin biosynthesis I
THII_1466	PWY-5664	tetrahydrobiopterin biosynthesis II
THII_1466	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THII_1466	PWY-6703	preQ<sub>0</sub> biosynthesis
THII_1466	PWY-6983	tetrahydrobiopterin biosynthesis III
THII_1466	PWY-7442	drosopterin and aurodrosopterin biosynthesis
THII_1466	PWY-7852	THII_1466
THII_1473	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
THII_1473	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
THII_1474	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
THII_1474	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
THII_1491	PWY-5839	menaquinol-7 biosynthesis
THII_1491	PWY-5851	demethylmenaquinol-9 biosynthesis
THII_1491	PWY-5852	demethylmenaquinol-8 biosynthesis I
THII_1491	PWY-5853	demethylmenaquinol-6 biosynthesis I
THII_1491	PWY-5890	menaquinol-10 biosynthesis
THII_1491	PWY-5891	menaquinol-11 biosynthesis
THII_1491	PWY-5892	menaquinol-12 biosynthesis
THII_1491	PWY-5895	menaquinol-13 biosynthesis
THII_1516	PWY-5692	allantoin degradation to glyoxylate II
THII_1516	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
THII_1523	PWY-5382	hydrogen oxidation II (aerobic, NAD)
THII_1523	PWY-6758	hydrogen production II
THII_1539	PWY-6655	xanthan biosynthesis
THII_1539	PWY-6658	acetan biosynthesis
THII_1547	PWY-5941	glycogen degradation II (eukaryotic)
THII_1547	PWY-6731	starch degradation III
THII_1547	PWY-6737	starch degradation V
THII_1547	PWY-7238	sucrose biosynthesis II
THII_1554	PWY-5108	L-isoleucine biosynthesis V
THII_1554	PWY-5132	humulone biosynthesis
THII_1554	PWY-5133	cohumulone biosynthesis
THII_1554	PWY-6672	<i>cis</i>-genanyl-CoA degradation
THII_1554	PWY-7118	chitin degradation to ethanol
THII_1554	PWY-7857	THII_1554
THII_1562	PWY-6654	phosphopantothenate biosynthesis III
THII_1563	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THII_1563	PWY-6148	tetrahydromethanopterin biosynthesis
THII_1563	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
THII_1563	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THII_1563	PWY-7852	THII_1563
THII_1563	PWY-7853	THII_1563
THII_1566	PWY-6936	seleno-amino acid biosynthesis
THII_1566	PWY-7274	D-cycloserine biosynthesis
THII_1566	PWY-7870	THII_1566
THII_1568	PWY-6823	molybdenum cofactor biosynthesis
THII_1595	PWY-5839	menaquinol-7 biosynthesis
THII_1595	PWY-5844	menaquinol-9 biosynthesis
THII_1595	PWY-5849	menaquinol-6 biosynthesis
THII_1595	PWY-5890	menaquinol-10 biosynthesis
THII_1595	PWY-5891	menaquinol-11 biosynthesis
THII_1595	PWY-5892	menaquinol-12 biosynthesis
THII_1595	PWY-5895	menaquinol-13 biosynthesis
THII_1599	PWY-702	L-methionine biosynthesis II
THII_1615	PWY-3781	aerobic respiration I (cytochrome c)
THII_1615	PWY-4521	arsenite oxidation I (respiratory)
THII_1615	PWY-6692	Fe(II) oxidation
THII_1615	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THII_1633	PWY-6123	inosine-5'-phosphate biosynthesis I
THII_1633	PWY-6124	inosine-5'-phosphate biosynthesis II
THII_1633	PWY-7234	inosine-5'-phosphate biosynthesis III
THII_1646	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THII_1646	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THII_1646	PWY-7953	THII_1646
THII_1649	PWY-3821	galactose degradation III
THII_1649	PWY-6317	galactose degradation I (Leloir pathway)
THII_1649	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
THII_1649	PWY-6527	stachyose degradation
THII_1649	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
THII_1649	PWY-7344	UDP-D-galactose biosynthesis
THII_1691	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
THII_1695	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
THII_1695	PWY-5940	streptomycin biosynthesis
THII_1696	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
THII_1715	PWY-5381	pyridine nucleotide cycling (plants)
THII_1715	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
THII_1715	PWY-6596	adenosine nucleotides degradation I
THII_1715	PWY-6606	guanosine nucleotides degradation II
THII_1715	PWY-6607	guanosine nucleotides degradation I
THII_1715	PWY-6608	guanosine nucleotides degradation III
THII_1715	PWY-7185	UTP and CTP dephosphorylation I
THII_1715	PWY-7821	THII_1715
THII_1736	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THII_1736	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THII_1736	PWY-5989	stearate biosynthesis II (bacteria and plants)
THII_1736	PWY-5994	palmitate biosynthesis I (animals and fungi)
THII_1736	PWY-6113	superpathway of mycolate biosynthesis
THII_1736	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THII_1736	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THII_1736	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THII_1736	PWY-7663	gondoate biosynthesis (anaerobic)
THII_1736	PWY-7664	oleate biosynthesis IV (anaerobic)
THII_1736	PWY-7858	THII_1736
THII_1736	PWYG-321	mycolate biosynthesis
THII_1741	PWY-7560	methylerythritol phosphate pathway II
THII_1742	PWY-5667	CDP-diacylglycerol biosynthesis I
THII_1742	PWY-5981	CDP-diacylglycerol biosynthesis III
THII_1742	PWY-7817	THII_1742
THII_1748	PWY-7799	THII_1748
THII_1748	PWY-7800	THII_1748
THII_1751	PWY-6823	molybdenum cofactor biosynthesis
THII_1751	PWY-7887	THII_1751
THII_1754	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
THII_1754	PWY-7820	THII_1754
THII_1765	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THII_1773	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
THII_1773	PWY-6167	flavin biosynthesis II (archaea)
THII_1773	PWY-6168	flavin biosynthesis III (fungi)
THII_1773	PWY-7863	THII_1773
THII_1782	PWY-6683	sulfate reduction III (assimilatory)
THII_1837	PWY-6700	queuosine biosynthesis
THII_1840	PWY-5269	cardiolipin biosynthesis II
THII_1840	PWY-5668	cardiolipin biosynthesis I
THII_1840	PWY-7817	THII_1840
THII_1862	PWY-5747	2-methylcitrate cycle II
THII_1873	PWY-6891	thiazole biosynthesis II (Bacillus)
THII_1873	PWY-6892	thiazole biosynthesis I (E. coli)
THII_1873	PWY-7560	methylerythritol phosphate pathway II
THII_1875	PWY-5532	adenosine nucleotides degradation IV
THII_1875	PWY-5723	Rubisco shunt
THII_1876	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THII_1880	PWY-6654	phosphopantothenate biosynthesis III
THII_1888	PWY-5964	guanylyl molybdenum cofactor biosynthesis
THII_1888	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
THII_1889	PWY-6832	2-aminoethylphosphonate degradation II
THII_1909	PWY-2941	L-lysine biosynthesis II
THII_1909	PWY-2942	L-lysine biosynthesis III
THII_1909	PWY-5097	L-lysine biosynthesis VI
THII_1920	PWY-5686	UMP biosynthesis
THII_1920	PWY-7790	THII_1920
THII_1920	PWY-7791	THII_1920
THII_1923	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_1923	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THII_1923	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THII_1923	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_1977	PWY-5958	acridone alkaloid biosynthesis
THII_1977	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
THII_1977	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
THII_1981	PWY-7851	THII_1981
THII_2090	PWY-3341	L-proline biosynthesis III
THII_2090	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
THII_2115	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
THII_2115	PWY-622	starch biosynthesis
THII_2115	PWY-7900	THII_2115
THII_2118	PWY-2301	<i>myo</i>-inositol biosynthesis
THII_2118	PWY-4702	phytate degradation I
THII_2118	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
THII_2132	PWY-7883	THII_2132
THII_2139	PWY-3341	L-proline biosynthesis III
THII_2139	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
THII_2141	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
THII_2141	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
THII_2141	PWY-7622	UDP-galactofuranose biosynthesis
THII_2152	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_2152	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THII_2152	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THII_2152	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_2166	PWY-7731	THII_2166
THII_2170	PWY-6012	acyl carrier protein metabolism I
THII_2170	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
THII_2170	PWY-6289	petrobactin biosynthesis
THII_2171	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
THII_2204	PWY-1361	benzoyl-CoA degradation I (aerobic)
THII_2204	PWY-5109	2-methylbutanoate biosynthesis
THII_2204	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
THII_2204	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
THII_2204	PWY-5177	glutaryl-CoA degradation
THII_2204	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
THII_2204	PWY-6435	4-hydroxybenzoate biosynthesis V
THII_2204	PWY-6583	pyruvate fermentation to butanol I
THII_2204	PWY-6863	pyruvate fermentation to hexanol
THII_2204	PWY-6883	pyruvate fermentation to butanol II
THII_2204	PWY-6944	androstenedione degradation
THII_2204	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
THII_2204	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
THII_2204	PWY-7007	methyl ketone biosynthesis
THII_2204	PWY-7046	4-coumarate degradation (anaerobic)
THII_2204	PWY-7094	fatty acid salvage
THII_2204	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
THII_2204	PWY-735	jasmonic acid biosynthesis
THII_2204	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
THII_2204	PWY-7606	docosahexaenoate biosynthesis III (mammals)
THII_2204	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
THII_2204	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
THII_2204	PWY-7726	THII_2204
THII_2204	PWY-7778	THII_2204
THII_2204	PWY-7779	THII_2204
THII_2215	PWY-4381	fatty acid biosynthesis initiation I
THII_2215	PWY-6799	fatty acid biosynthesis (plant mitochondria)
THII_2215	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THII_2219	PWY-6174	mevalonate pathway II (archaea)
THII_2219	PWY-7391	isoprene biosynthesis II (engineered)
THII_2219	PWY-7524	mevalonate pathway III (archaea)
THII_2219	PWY-7571	ferrichrome A biosynthesis
THII_2219	PWY-922	mevalonate pathway I
THII_2292	PWY-5958	acridone alkaloid biosynthesis
THII_2292	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
THII_2292	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
THII_2306	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
THII_2309	PWY-7560	methylerythritol phosphate pathway II
THII_2314	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
THII_2314	PWY-6596	adenosine nucleotides degradation I
THII_2314	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THII_2326	PWY-5669	phosphatidylethanolamine biosynthesis I
THII_2327	PWY-5103	L-isoleucine biosynthesis III
THII_2327	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THII_2331	PWY-5101	L-isoleucine biosynthesis II
THII_2331	PWY-5103	L-isoleucine biosynthesis III
THII_2331	PWY-5104	L-isoleucine biosynthesis IV
THII_2331	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
THII_2331	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THII_2331	PWY-6389	(<i>S</i>)-acetoin biosynthesis
THII_2331	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THII_2332	PWY-5101	L-isoleucine biosynthesis II
THII_2332	PWY-5103	L-isoleucine biosynthesis III
THII_2332	PWY-5104	L-isoleucine biosynthesis IV
THII_2332	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
THII_2332	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THII_2332	PWY-6389	(<i>S</i>)-acetoin biosynthesis
THII_2332	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THII_2338	PWY-5381	pyridine nucleotide cycling (plants)
THII_2342	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
THII_2342	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
THII_2342	PWY-6897	thiamin salvage II
THII_2342	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
THII_2342	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
THII_2342	PWY-7356	thiamin salvage IV (yeast)
THII_2342	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
THII_2343	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
THII_2343	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
THII_2343	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
THII_2343	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
THII_2343	PWY-6978	plastoquinol-9 biosynthesis II
THII_2352	PWY-5316	nicotine biosynthesis
THII_2352	PWY-5381	pyridine nucleotide cycling (plants)
THII_2352	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THII_2352	PWY-7342	superpathway of nicotine biosynthesis
THII_2389	PWY-2781	<i>cis</i>-zeatin biosynthesis
THII_2396	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THII_2407	PWY-6717	(1,4)-&beta;-xylan degradation
THII_2407	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
THII_2425	PWY-5101	L-isoleucine biosynthesis II
THII_2425	PWY-5103	L-isoleucine biosynthesis III
THII_2425	PWY-5104	L-isoleucine biosynthesis IV
THII_2425	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THII_2463	PWY-4702	phytate degradation I
THII_2489	PWY-5316	nicotine biosynthesis
THII_2489	PWY-7342	superpathway of nicotine biosynthesis
THII_2531	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THII_2531	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THII_2532	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_2532	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THII_2532	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THII_2532	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_2533	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THII_2533	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THII_2533	PWY-7953	THII_2533
THII_2534	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THII_2534	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THII_2534	PWY-7953	THII_2534
THII_2535	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THII_2535	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THII_2535	PWY-7953	THII_2535
THII_2545	PWY-6936	seleno-amino acid biosynthesis
THII_2545	PWY-7274	D-cycloserine biosynthesis
THII_2545	PWY-7870	THII_2545
THII_2552	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
THII_2595	PWY-4381	fatty acid biosynthesis initiation I
THII_2595	PWY-5743	3-hydroxypropanoate cycle
THII_2595	PWY-5744	glyoxylate assimilation
THII_2595	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
THII_2595	PWY-6722	candicidin biosynthesis
THII_2596	PWY-5667	CDP-diacylglycerol biosynthesis I
THII_2596	PWY-5981	CDP-diacylglycerol biosynthesis III
THII_2596	PWY-7902	THII_2596
THII_2611	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THII_2622	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
THII_2622	PWY-6549	L-glutamine biosynthesis III
THII_2622	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
THII_2622	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THII_2636	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
THII_2682	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_2682	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_2682	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_2683	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_2683	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_2683	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THII_2689	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
THII_2701	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
THII_2713	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
THII_2713	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THII_2713	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
THII_2718	PWY-7887	THII_2718
THII_2718	PWY-7892	THII_2718
THII_2721	PWY-6823	molybdenum cofactor biosynthesis
THII_2756	PWY-6167	flavin biosynthesis II (archaea)
THII_2756	PWY-6168	flavin biosynthesis III (fungi)
THII_2757	PWY-6167	flavin biosynthesis II (archaea)
THII_2757	PWY-6168	flavin biosynthesis III (fungi)
THII_2757	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THII_2757	PWY-7991	THII_2757
THII_2841	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THII_2844	PWY-6749	CMP-legionaminate biosynthesis I
THII_2859	PWY-5482	pyruvate fermentation to acetate II
THII_2859	PWY-5485	pyruvate fermentation to acetate IV
THII_2859	PWY-5497	purine nucleobases degradation II (anaerobic)
THII_2911	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
THII_2912	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
THII_2912	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
THII_2913	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
THII_2913	PWY-7177	UTP and CTP dephosphorylation II
THII_2913	PWY-7185	UTP and CTP dephosphorylation I
THII_2932	PWY-7980	THII_2932
THII_2935	PWY-6167	flavin biosynthesis II (archaea)
THII_2935	PWY-6168	flavin biosynthesis III (fungi)
THII_2935	PWY-7980	THII_2935
THII_2936	PWY-7980	THII_2936
THII_2946	PWY-3781	aerobic respiration I (cytochrome c)
THII_2946	PWY-4302	aerobic respiration III (alternative oxidase pathway)
THII_2946	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
THII_2946	PWY-6692	Fe(II) oxidation
THII_2980	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THII_3019	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THII_3019	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THII_3019	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THII_3057	PWY-5659	GDP-mannose biosynthesis
THII_3057	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
THII_3080	PWY-5381	pyridine nucleotide cycling (plants)
THII_3080	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THII_3080	PWY-7761	THII_3080
THII_3081	PWY-6891	thiazole biosynthesis II (Bacillus)
THII_3081	PWY-6892	thiazole biosynthesis I (E. coli)
THII_3088	PWY-3081	L-lysine biosynthesis V
THII_3088	PWY-6871	3-methylbutanol biosynthesis
THII_3088	PWY-7710	THII_3088
THII_3093	PWY-2201	folate transformations I
THII_3093	PWY-3841	folate transformations II
THII_3100	PWY-6936	seleno-amino acid biosynthesis
THII_3100	PWY-7274	D-cycloserine biosynthesis
THII_3100	PWY-7870	THII_3100
THII_3106	PWY-5278	sulfite oxidation III
THII_3106	PWY-5279	sulfite oxidation II
THII_3130	PWY-6823	molybdenum cofactor biosynthesis
THII_3151	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_3151	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THII_3151	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_3162	PWY-6123	inosine-5'-phosphate biosynthesis I
THII_3162	PWY-6124	inosine-5'-phosphate biosynthesis II
THII_3162	PWY-7234	inosine-5'-phosphate biosynthesis III
THII_3177	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_3179	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_3180	PWY-6854	ethylene biosynthesis III (microbes)
THII_3186	PWY-40	putrescine biosynthesis I
THII_3186	PWY-43	putrescine biosynthesis II
THII_3186	PWY-6305	putrescine biosynthesis IV
THII_3186	PWY-6834	spermidine biosynthesis III
THII_3203	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
THII_3203	PWY-7688	THII_3203
THII_3214	PWY-5392	reductive TCA cycle II
THII_3214	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THII_3214	PWY-5690	TCA cycle II (plants and fungi)
THII_3214	PWY-5913	TCA cycle VI (obligate autotrophs)
THII_3214	PWY-6728	methylaspartate cycle
THII_3214	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_3214	PWY-7254	TCA cycle VII (acetate-producers)
THII_3214	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THII_3224	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THII_3224	PWY-6416	quinate degradation II
THII_3224	PWY-6707	gallate biosynthesis
THII_3233	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THII_3233	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
THII_3250	PWY-5022	4-aminobutanoate degradation V
THII_3250	PWY-6728	methylaspartate cycle
THII_3250	PWY-7126	ethylene biosynthesis IV
THII_3258	PWY-6854	ethylene biosynthesis III (microbes)
THII_3285	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THII_3285	PWY-6164	3-dehydroquinate biosynthesis I
THII_3285	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
THII_3286	PWY-5344	L-homocysteine biosynthesis
THII_3311	PWY-5532	adenosine nucleotides degradation IV
THII_3311	PWY-5723	Rubisco shunt
THII_3312	PWY-5532	adenosine nucleotides degradation IV
THII_3312	PWY-5723	Rubisco shunt
THII_3316	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THII_3338	PWY-1042	glycolysis IV (plant cytosol)
THII_3338	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THII_3338	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_3338	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THII_3338	PWY-7385	1,3-propanediol biosynthesis (engineered)
THII_3339	PWY-1042	glycolysis IV (plant cytosol)
THII_3339	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THII_3339	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_3339	PWY-5723	Rubisco shunt
THII_3339	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THII_3339	PWY-6886	1-butanol autotrophic biosynthesis
THII_3339	PWY-6901	superpathway of glucose and xylose degradation
THII_3339	PWY-7003	glycerol degradation to butanol
THII_3339	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THII_3339	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THII_3340	PWY-1042	glycolysis IV (plant cytosol)
THII_3340	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_3340	PWY-6886	1-butanol autotrophic biosynthesis
THII_3340	PWY-6901	superpathway of glucose and xylose degradation
THII_3340	PWY-7003	glycerol degradation to butanol
THII_3343	PWY-2201	folate transformations I
THII_3343	PWY-3841	folate transformations II
THII_3343	PWY-7977	THII_3343
THII_3350	PWY-7255	ergothioneine biosynthesis I (bacteria)
THII_3351	PWY-7255	ergothioneine biosynthesis I (bacteria)
THII_3351	PWY-7550	ergothioneine biosynthesis II (fungi)
THII_3361	PWY-5392	reductive TCA cycle II
THII_3361	PWY-5537	pyruvate fermentation to acetate V
THII_3361	PWY-5538	pyruvate fermentation to acetate VI
THII_3361	PWY-5690	TCA cycle II (plants and fungi)
THII_3361	PWY-5913	TCA cycle VI (obligate autotrophs)
THII_3361	PWY-6728	methylaspartate cycle
THII_3361	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_3361	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THII_3362	PWY-5392	reductive TCA cycle II
THII_3362	PWY-5537	pyruvate fermentation to acetate V
THII_3362	PWY-5538	pyruvate fermentation to acetate VI
THII_3362	PWY-5690	TCA cycle II (plants and fungi)
THII_3362	PWY-5913	TCA cycle VI (obligate autotrophs)
THII_3362	PWY-6728	methylaspartate cycle
THII_3362	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_3362	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
THII_3387	PWY-3461	L-tyrosine biosynthesis II
THII_3387	PWY-3462	L-phenylalanine biosynthesis II
THII_3387	PWY-6120	L-tyrosine biosynthesis III
THII_3387	PWY-6627	salinosporamide A biosynthesis
THII_3387	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
THII_3387	PWY-7626	bacilysin biosynthesis
THII_3402	PWY-1042	glycolysis IV (plant cytosol)
THII_3402	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_3402	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THII_3402	PWY-7003	glycerol degradation to butanol
THII_3411	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THII_3421	PWY-6164	3-dehydroquinate biosynthesis I
THII_3422	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THII_3437	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
THII_3443	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
THII_3443	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
THII_3444	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
THII_3445	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
THII_3446	PWY-1622	formaldehyde assimilation I (serine pathway)
THII_3446	PWY-5392	reductive TCA cycle II
THII_3446	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THII_3446	PWY-5690	TCA cycle II (plants and fungi)
THII_3446	PWY-5913	TCA cycle VI (obligate autotrophs)
THII_3446	PWY-6728	methylaspartate cycle
THII_3446	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_3446	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
THII_3446	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THII_3455	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THII_3472	PWY-3841	folate transformations II
THII_3472	PWY-6614	tetrahydrofolate biosynthesis
THII_3480	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THII_3480	PWY-6578	8-amino-7-oxononanoate biosynthesis III
THII_3480	PWY-7147	8-amino-7-oxononanoate biosynthesis II
THII_3481	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
THII_3485	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_3485	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THII_3485	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THII_3485	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_3487	PWY-622	starch biosynthesis
THII_3491	PWY-622	starch biosynthesis
THII_3499	PWY-6891	thiazole biosynthesis II (Bacillus)
THII_3499	PWY-6892	thiazole biosynthesis I (E. coli)
THII_3499	PWY-7560	methylerythritol phosphate pathway II
THII_3511	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_3511	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_3514	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_3514	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THII_3514	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THII_3514	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_3515	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_3515	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_3520	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
THII_3541	PWY-6123	inosine-5'-phosphate biosynthesis I
THII_3541	PWY-6124	inosine-5'-phosphate biosynthesis II
THII_3541	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THII_3541	PWY-7234	inosine-5'-phosphate biosynthesis III
THII_3542	PWY-7560	methylerythritol phosphate pathway II
THII_3562	PWY-6871	3-methylbutanol biosynthesis
THII_3572	PWY-5913	TCA cycle VI (obligate autotrophs)
THII_3572	PWY-6549	L-glutamine biosynthesis III
THII_3572	PWY-6728	methylaspartate cycle
THII_3572	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_3572	PWY-7124	ethylene biosynthesis V (engineered)
THII_3572	PWY-7254	TCA cycle VII (acetate-producers)
THII_3572	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THII_3585	PWY-5367	petroselinate biosynthesis
THII_3585	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THII_3585	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THII_3585	PWY-5989	stearate biosynthesis II (bacteria and plants)
THII_3585	PWY-5994	palmitate biosynthesis I (animals and fungi)
THII_3585	PWY-6113	superpathway of mycolate biosynthesis
THII_3585	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THII_3585	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THII_3585	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THII_3585	PWY-7663	gondoate biosynthesis (anaerobic)
THII_3585	PWY-7664	oleate biosynthesis IV (anaerobic)
THII_3585	PWY-7858	THII_3585
THII_3585	PWYG-321	mycolate biosynthesis
THII_3586	PWY-4381	fatty acid biosynthesis initiation I
THII_3586	PWY-6799	fatty acid biosynthesis (plant mitochondria)
THII_3586	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THII_3587	PWY-4381	fatty acid biosynthesis initiation I
THII_3610	PWY-6614	tetrahydrofolate biosynthesis
THII_3630	PWY-1042	glycolysis IV (plant cytosol)
THII_3630	PWY-1622	formaldehyde assimilation I (serine pathway)
THII_3630	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THII_3630	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_3630	PWY-5723	Rubisco shunt
THII_3630	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THII_3630	PWY-6886	1-butanol autotrophic biosynthesis
THII_3630	PWY-6901	superpathway of glucose and xylose degradation
THII_3630	PWY-7003	glycerol degradation to butanol
THII_3630	PWY-7124	ethylene biosynthesis V (engineered)
THII_3630	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THII_3631	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THII_3631	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
THII_3634	PWY-6749	CMP-legionaminate biosynthesis I
THII_3660	PWY-6938	NADH repair
THII_3700	PWY-5958	acridone alkaloid biosynthesis
THII_3700	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
THII_3700	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
THII_3701	PWY-181	photorespiration
THII_3702	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THII_3702	PWY-5723	Rubisco shunt
THII_3716	PWY-2941	L-lysine biosynthesis II
THII_3716	PWY-2942	L-lysine biosynthesis III
THII_3716	PWY-5097	L-lysine biosynthesis VI
THII_3724	PWY-5686	UMP biosynthesis
THII_3737	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THII_3741	PWY-6012	acyl carrier protein metabolism I
THII_3741	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
THII_3741	PWY-6289	petrobactin biosynthesis
THII_3743	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THII_3743	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
THII_3779	PWY-1622	formaldehyde assimilation I (serine pathway)
THII_3779	PWY-5484	glycolysis II (from fructose 6-phosphate)
THII_3807	PWY-7158	L-phenylalanine degradation V
THII_3822	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_3822	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THII_3860	PWY-3781	aerobic respiration I (cytochrome c)
THII_3860	PWY-4302	aerobic respiration III (alternative oxidase pathway)
THII_3860	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THII_3860	PWY-5690	TCA cycle II (plants and fungi)
THII_3860	PWY-6728	methylaspartate cycle
THII_3860	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THII_3860	PWY-7254	TCA cycle VII (acetate-producers)
THII_3860	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
THII_3864	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THII_3865	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
THII_3865	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
THII_3869	PWY-5155	&beta;-alanine biosynthesis III
THII_3873	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THII_3881	PWY-6829	tRNA methylation (yeast)
THII_3881	PWY-7285	methylwyosine biosynthesis
THII_3881	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
THII_3897	PWY-6871	3-methylbutanol biosynthesis
THII_3899	PWY-6834	spermidine biosynthesis III
THII_3904	PWY-3961	phosphopantothenate biosynthesis II
THII_3905	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
THII_3905	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
THII_3906	PWY-5381	pyridine nucleotide cycling (plants)
THII_3906	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THII_3906	PWY-7761	THII_3906
THII_3927	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THII_3927	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THII_3927	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THII_3927	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THII_3937	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THII_3937	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THII_3937	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THII_3938	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THII_3938	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
THII_3940	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
THII_3941	PWY-4983	L-citrulline-nitric oxide cycle
THII_3941	PWY-4984	urea cycle
THII_3941	PWY-5	canavanine biosynthesis
THII_3941	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THII_3941	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
