THII_0001	PF00004	ATPase family associated with various cellular activities (AAA)
THII_0001	PF02861	Clp amino terminal domain
THII_0001	PF07724	AAA domain (Cdc48 subfamily)
THII_0001	PF10431	C-terminal, D2-small domain, of ClpB protein
THII_0002	PF01724	Domain of unknown function DUF29
THII_0006	PF03683	THII_0006
THII_0009	PF08012	THII_0009
THII_0010	PF07593	THII_0010
THII_0010	PF13517	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
THII_0012	PF00109	Beta-ketoacyl synthase, N-terminal domain
THII_0012	PF00550	Phosphopantetheine attachment site
THII_0012	PF00698	Acyl transferase domain
THII_0012	PF02801	Beta-ketoacyl synthase, C-terminal domain
THII_0012	PF08659	KR domain
THII_0012	PF14765	Polyketide synthase dehydratase
THII_0012	PF16197	THII_0012
THII_0013	PF03160	Calx-beta domain
THII_0015	PF04754	THII_0015
THII_0015	PF14261	THII_0015
THII_0017	PF00932	Lamin Tail Domain
THII_0017	PF03372	Endonuclease/Exonuclease/phosphatase family
THII_0017	PF13205	Bacterial Ig-like domain
THII_0018	PF04389	Peptidase family M28
THII_0019	PF01066	CDP-alcohol phosphatidyltransferase
THII_0020	PF01148	Cytidylyltransferase family
THII_0021	PF01553	Acyltransferase
THII_0022	PF05685	Putative restriction endonuclease
THII_0023	PF11939	Protein of unknown function (DUF3457)
THII_0024	PF02613	Nitrate reductase delta subunit
THII_0025	PF03916	THII_0025
THII_0026	PF13247	4Fe-4S dicluster domain
THII_0027	PF00384	Molybdopterin oxidoreductase
THII_0027	PF01568	Molydopterin dinucleotide binding domain
THII_0027	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
THII_0028	PF00535	Glycosyl transferase family 2
THII_0029	PF01409	tRNA synthetases class II core domain (F)
THII_0029	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
THII_0030	PF08238	Sel1 repeat
THII_0031	PF02153	Prephenate dehydrogenase
THII_0032	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
THII_0033	PF09723	THII_0033
THII_0034	PF02224	Cytidylate kinase
THII_0035	PF00575	S1 RNA binding domain
THII_0036	PF00216	Bacterial DNA-binding protein
THII_0037	PF13432	Tetratricopeptide repeat
THII_0038	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
THII_0039	PF13419	Haloacid dehalogenase-like hydrolase
THII_0041	PF02810	SEC-C motif
THII_0041	PF13424	Tetratricopeptide repeat
THII_0041	PF13844	Glycosyl transferase family 41
THII_0043	PF07412	Geminin
THII_0043	PF12844	Helix-turn-helix domain
THII_0044	PF01724	Domain of unknown function DUF29
THII_0046	PF01724	Domain of unknown function DUF29
THII_0047	PF00899	ThiF family
THII_0048	PF01026	TatD related DNase
THII_0049	PF13437	HlyD family secretion protein
THII_0049	PF13533	Biotin-lipoyl like
THII_0050	PF00072	Response regulator receiver domain
THII_0050	PF00563	EAL domain
THII_0050	PF00990	GGDEF domain
THII_0050	PF08448	PAS fold
THII_0051	PF01627	Hpt domain
THII_0053	PF05685	Putative restriction endonuclease
THII_0054	PF16363	THII_0054
THII_0055	PF00534	Glycosyl transferases group 1
THII_0056	PF01522	Polysaccharide deacetylase
THII_0057	PF02325	THII_0057
THII_0058	PF03807	NADP oxidoreductase coenzyme F420-dependent
THII_0058	PF14748	Pyrroline-5-carboxylate reductase dimerisation
THII_0060	PF13672	Protein phosphatase 2C
THII_0061	PF00072	Response regulator receiver domain
THII_0061	PF00990	GGDEF domain
THII_0061	PF08448	PAS fold
THII_0062	PF01103	Surface antigen
THII_0062	PF01734	Patatin-like phospholipase
THII_0063	PF05099	Tellurite resistance protein TerB
THII_0065	PF00085	Thioredoxin
THII_0065	PF14559	Tetratricopeptide repeat
THII_0065	PF14561	Tetratricopeptide repeat
THII_0066	PF01880	Desulfoferrodoxin
THII_0067	PF00929	Exonuclease
THII_0068	PF01979	Amidohydrolase family
THII_0069	PF00793	DAHP synthetase I family
THII_0070	PF00072	Response regulator receiver domain
THII_0070	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_0070	PF00512	His Kinase A (phospho-acceptor) domain
THII_0070	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0071	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
THII_0071	PF08479	POTRA domain, ShlB-type
THII_0072	PF01436	NHL repeat
THII_0074	PF08238	Sel1 repeat
THII_0075	PF08534	Redoxin
THII_0076	PF01293	Phosphoenolpyruvate carboxykinase
THII_0077	PF03050	THII_0077
THII_0079	PF13358	DDE superfamily endonuclease
THII_0081	PF00535	Glycosyl transferase family 2
THII_0082	PF13358	DDE superfamily endonuclease
THII_0083	PF01710	Transposase
THII_0088	PF16260	THII_0088
THII_0090	PF01370	NAD dependent epimerase/dehydratase family
THII_0091	PF00294	pfkB family carbohydrate kinase
THII_0091	PF01467	Cytidylyltransferase
THII_0092	PF11306	Protein of unknown function (DUF3108)
THII_0093	PF06804	NlpB/DapX lipoprotein
THII_0095	PF00701	Dihydrodipicolinate synthetase family
THII_0097	PF01436	NHL repeat
THII_0097	PF01650	Peptidase C13 family
THII_0097	PF03160	Calx-beta domain
THII_0097	PF05345	Putative Ig domain
THII_0098	PF03169	THII_0098
THII_0100	PF02915	Rubrerythrin
THII_0101	PF03167	Uracil DNA glycosylase superfamily
THII_0102	PF04055	Radical SAM superfamily
THII_0102	PF06969	HemN C-terminal domain
THII_0104	PF01063	Aminotransferase class IV
THII_0105	PF10276	Zinc-finger domain
THII_0106	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
THII_0109	PF13386	THII_0109
THII_0110	PF02630	SCO1/SenC
THII_0111	PF04314	Protein of unknown function (DUF461)
THII_0112	PF04151	Bacterial pre-peptidase C-terminal domain
THII_0114	PF01145	SPFH domain / Band 7 family
THII_0117	PF06769	Plasmid encoded toxin Txe
THII_0118	PF01493	GXGXG motif
THII_0119	PF13847	Methyltransferase domain
THII_0120	PF05096	Glutamine cyclotransferase
THII_0122	PF04235	THII_0122
THII_0123	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
THII_0124	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
THII_0124	PF02843	Phosphoribosylglycinamide synthetase, C domain
THII_0124	PF02844	Phosphoribosylglycinamide synthetase, N domain
THII_0125	PF02594	Uncharacterised ACR, YggU family COG1872
THII_0127	PF01925	THII_0127
THII_0129	PF07726	ATPase family associated with various cellular activities (AAA)
THII_0130	PF14258	THII_0130
THII_0131	PF12770	THII_0131
THII_0131	PF13424	Tetratricopeptide repeat
THII_0132	PF01925	THII_0132
THII_0138	PF00005	ABC transporter
THII_0139	PF02687	THII_0139
THII_0139	PF12704	MacB-like periplasmic core domain
THII_0140	PF17131	THII_0140
THII_0142	PF01588	Putative tRNA binding domain
THII_0142	PF08264	Anticodon-binding domain of tRNA
THII_0142	PF09334	tRNA synthetases class I (M)
THII_0143	PF13145	PPIC-type PPIASE domain
THII_0143	PF13616	PPIC-type PPIASE domain
THII_0143	PF13624	SurA N-terminal domain
THII_0144	PF00216	Bacterial DNA-binding protein
THII_0145	PF00004	ATPase family associated with various cellular activities (AAA)
THII_0145	PF02190	ATP-dependent protease La (LON) domain
THII_0145	PF05362	Lon protease (S16) C-terminal proteolytic domain
THII_0146	PF06689	ClpX C4-type zinc finger
THII_0146	PF07724	AAA domain (Cdc48 subfamily)
THII_0146	PF10431	C-terminal, D2-small domain, of ClpB protein
THII_0147	PF00574	Clp protease
THII_0148	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
THII_0148	PF05697	Bacterial trigger factor protein (TF)
THII_0148	PF05698	Bacterial trigger factor protein (TF) C-terminus
THII_0150	PF00037	4Fe-4S binding domain
THII_0151	PF01467	Cytidylyltransferase
THII_0152	PF00490	Delta-aminolevulinic acid dehydratase
THII_0153	PF13676	TIR domain
THII_0154	PF01588	Putative tRNA binding domain
THII_0154	PF03147	Ferredoxin-fold anticodon binding domain
THII_0154	PF03483	B3/4 domain
THII_0154	PF03484	tRNA synthetase B5 domain
THII_0155	PF00216	Bacterial DNA-binding protein
THII_0156	PF13411	MerR HTH family regulatory protein
THII_0157	PF01521	Iron-sulphur cluster biosynthesis
THII_0159	PF00239	Resolvase, N terminal domain
THII_0160	PF01385	THII_0160
THII_0160	PF07282	THII_0160
THII_0161	PF10130	THII_0161
THII_0163	PF01385	THII_0163
THII_0163	PF07282	THII_0163
THII_0163	PF12323	THII_0163
THII_0164	PF00239	Resolvase, N terminal domain
THII_0167	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
THII_0167	PF05547	THII_0167
THII_0170	PF12784	THII_0170
THII_0171	PF01724	Domain of unknown function DUF29
THII_0176	PF13538	UvrD-like helicase C-terminal domain
THII_0176	PF13604	AAA domain
THII_0177	PF01520	N-acetylmuramoyl-L-alanine amidase
THII_0177	PF11741	AMIN domain
THII_0178	PF01145	SPFH domain / Band 7 family
THII_0179	PF01957	NfeD-like C-terminal, partner-binding
THII_0180	PF00085	Thioredoxin
THII_0181	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
THII_0181	PF07497	Rho termination factor, RNA-binding domain
THII_0181	PF07498	Rho termination factor, N-terminal domain
THII_0182	PF00535	Glycosyl transferase family 2
THII_0184	PF02685	Glucokinase
THII_0185	PF00535	Glycosyl transferase family 2
THII_0186	PF05685	Putative restriction endonuclease
THII_0189	PF00512	His Kinase A (phospho-acceptor) domain
THII_0189	PF00672	HAMP domain
THII_0189	PF01471	Putative peptidoglycan binding domain
THII_0189	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0189	PF02743	Cache domain
THII_0190	PF00931	NB-ARC domain
THII_0191	PF00708	Acylphosphatase
THII_0192	PF01061	THII_0192
THII_0193	PF13529	Peptidase_C39 like family
THII_0194	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
THII_0194	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
THII_0195	PF00111	2Fe-2S iron-sulfur cluster binding domain
THII_0195	PF00941	FAD binding domain in molybdopterin dehydrogenase
THII_0195	PF01799	[2Fe-2S] binding domain
THII_0195	PF03450	CO dehydrogenase flavoprotein C-terminal domain
THII_0196	PF00696	Amino acid kinase family
THII_0196	PF01842	ACT domain
THII_0196	PF13840	ACT domain
THII_0197	PF02599	Global regulator protein family
THII_0198	PF09835	THII_0198
THII_0199	PF00753	Metallo-beta-lactamase superfamily
THII_0199	PF03772	THII_0199
THII_0199	PF13567	THII_0199
THII_0200	PF05175	Methyltransferase small domain
THII_0201	PF01048	Phosphorylase superfamily
THII_0202	PF00156	Phosphoribosyl transferase domain
THII_0204	PF08241	Methyltransferase domain
THII_0205	PF05685	Putative restriction endonuclease
THII_0207	PF13489	Methyltransferase domain
THII_0208	PF09826	THII_0208
THII_0209	PF01678	Diaminopimelate epimerase
THII_0210	PF04340	Protein of unknown function, DUF484
THII_0211	PF02754	THII_0211
THII_0212	PF00400	WD domain, G-beta repeat
THII_0213	PF00005	ABC transporter
THII_0213	PF14524	Wzt C-terminal domain
THII_0214	PF00316	Fructose-1-6-bisphosphatase
THII_0215	PF00268	Ribonucleotide reductase, small chain
THII_0216	PF00317	Ribonucleotide reductase, all-alpha domain
THII_0216	PF02867	Ribonucleotide reductase, barrel domain
THII_0216	PF03477	ATP cone domain
THII_0217	PF01039	Carboxyl transferase domain
THII_0218	PF12576	THII_0218
THII_0219	PF09831	THII_0219
THII_0220	PF02481	DNA recombination-mediator protein A
THII_0221	PF01724	Domain of unknown function DUF29
THII_0222	PF01724	Domain of unknown function DUF29
THII_0223	PF00593	TonB dependent receptor
THII_0223	PF07715	TonB-dependent Receptor Plug Domain
THII_0224	PF10053	THII_0224
THII_0225	PF13538	UvrD-like helicase C-terminal domain
THII_0227	PF10047	THII_0227
THII_0229	PF15738	THII_0229
THII_0230	PF00067	Cytochrome P450
THII_0231	PF01047	MarR family
THII_0233	PF01266	FAD dependent oxidoreductase
THII_0234	PF00202	Aminotransferase class-III
THII_0234	PF01118	Semialdehyde dehydrogenase, NAD binding domain
THII_0235	PF01850	PIN domain
THII_0238	PF13520	Amino acid permease
THII_0241	PF09924	Uncharacterized conserved protein (DUF2156)
THII_0242	PF00781	Diacylglycerol kinase catalytic domain
THII_0243	PF01494	FAD binding domain
THII_0244	PF07927	YcfA-like protein
THII_0246	PF07690	Major Facilitator Superfamily
THII_0248	PF01192	RNA polymerase Rpb6
THII_0249	PF02824	TGS domain
THII_0249	PF04607	Region found in RelA / SpoT proteins
THII_0249	PF13291	ACT domain
THII_0249	PF13328	HD domain
THII_0250	PF03695	Uncharacterised protein family (UPF0149)
THII_0251	PF00557	Metallopeptidase family M24
THII_0251	PF05195	Aminopeptidase P, N-terminal domain
THII_0253	PF02129	X-Pro dipeptidyl-peptidase (S15 family)
THII_0255	PF03934	Type II secretion system (T2SS), protein K
THII_0256	PF00343	Carbohydrate phosphorylase
THII_0256	PF11897	THII_0256
THII_0257	PF00120	Glutamine synthetase, catalytic domain
THII_0257	PF03951	Glutamine synthetase, beta-Grasp domain
THII_0259	PF01545	Cation efflux family
THII_0259	PF16916	THII_0259
THII_0260	PF01345	THII_0260
THII_0260	PF10282	Lactonase, 7-bladed beta-propeller
THII_0261	PF02590	Predicted SPOUT methyltransferase
THII_0262	PF02545	Maf-like protein
THII_0263	PF00805	Pentapeptide repeats (8 copies)
THII_0265	PF14333	THII_0265
THII_0266	PF00128	Alpha amylase, catalytic domain
THII_0266	PF02806	Alpha amylase, C-terminal all-beta domain
THII_0266	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
THII_0267	PF00072	Response regulator receiver domain
THII_0267	PF00512	His Kinase A (phospho-acceptor) domain
THII_0267	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0268	PF00072	Response regulator receiver domain
THII_0268	PF00512	His Kinase A (phospho-acceptor) domain
THII_0268	PF00672	HAMP domain
THII_0268	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0268	PF17203	THII_0268
THII_0271	PF00384	Molybdopterin oxidoreductase
THII_0271	PF01568	Molydopterin dinucleotide binding domain
THII_0274	PF01650	Peptidase C13 family
THII_0274	PF07494	Two component regulator propeller
THII_0275	PF07788	THII_0275
THII_0275	PF12644	THII_0275
THII_0276	PF03415	Clostripain family
THII_0277	PF01400	Astacin (Peptidase family M12A)
THII_0279	PF05685	Putative restriction endonuclease
THII_0280	PF05685	Putative restriction endonuclease
THII_0282	PF12770	THII_0282
THII_0284	PF04754	THII_0284
THII_0284	PF14261	THII_0284
THII_0285	PF16363	THII_0285
THII_0286	PF01370	NAD dependent epimerase/dehydratase family
THII_0287	PF01196	Ribosomal protein L17
THII_0288	PF01000	RNA polymerase Rpb3/RpoA insert domain
THII_0288	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
THII_0288	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
THII_0289	PF00163	Ribosomal protein S4/S9 N-terminal domain
THII_0289	PF01479	S4 domain
THII_0290	PF00411	Ribosomal protein S11
THII_0291	PF00416	Ribosomal protein S13/S18
THII_0292	PF00344	SecY translocase
THII_0293	PF00828	Ribosomal protein L18e/L15
THII_0294	PF00327	Ribosomal protein L30p/L7e
THII_0295	PF00333	Ribosomal protein S5, N-terminal domain
THII_0295	PF03719	Ribosomal protein S5, C-terminal domain
THII_0296	PF00861	Ribosomal L18p/L5e family
THII_0297	PF00347	Ribosomal protein L6
THII_0298	PF00410	Ribosomal protein S8
THII_0299	PF00253	Ribosomal protein S14p/S29e
THII_0300	PF00281	Ribosomal protein L5
THII_0300	PF00673	ribosomal L5P family C-terminus
THII_0301	PF00467	KOW motif
THII_0301	PF17136	THII_0301
THII_0302	PF00238	Ribosomal protein L14p/L23e
THII_0303	PF00366	Ribosomal protein S17
THII_0304	PF00831	Ribosomal L29 protein
THII_0305	PF00252	Ribosomal protein L16p/L10e
THII_0306	PF00189	Ribosomal protein S3, C-terminal domain
THII_0306	PF07650	KH domain
THII_0307	PF00237	Ribosomal protein L22p/L17e
THII_0308	PF00203	Ribosomal protein S19
THII_0309	PF00181	Ribosomal Proteins L2, RNA binding domain
THII_0309	PF03947	Ribosomal Proteins L2, C-terminal domain
THII_0310	PF00276	Ribosomal protein L23
THII_0311	PF00573	Ribosomal protein L4/L1 family
THII_0312	PF00297	Ribosomal protein L3
THII_0313	PF00338	Ribosomal protein S10p/S20e
THII_0314	PF00009	Elongation factor Tu GTP binding domain
THII_0314	PF03143	Elongation factor Tu C-terminal domain
THII_0314	PF03144	Elongation factor Tu domain 2
THII_0315	PF00009	Elongation factor Tu GTP binding domain
THII_0315	PF00679	Elongation factor G C-terminus
THII_0315	PF03144	Elongation factor Tu domain 2
THII_0315	PF03764	Elongation factor G, domain IV
THII_0315	PF14492	Elongation Factor G, domain II
THII_0316	PF00177	Ribosomal protein S7p/S5e
THII_0317	PF00164	Ribosomal protein S12/S23
THII_0318	PF14015	THII_0318
THII_0322	PF00474	Sodium:solute symporter family
THII_0323	PF00034	Cytochrome c
THII_0324	PF01322	Cytochrome C'
THII_0325	PF04055	Radical SAM superfamily
THII_0326	PF00561	alpha/beta hydrolase fold
THII_0327	PF01551	Peptidase family M23
THII_0328	PF00069	Protein kinase domain
THII_0329	PF00805	Pentapeptide repeats (8 copies)
THII_0330	PF00623	RNA polymerase Rpb1, domain 2
THII_0330	PF04983	RNA polymerase Rpb1, domain 3
THII_0330	PF04997	RNA polymerase Rpb1, domain 1
THII_0330	PF04998	RNA polymerase Rpb1, domain 5
THII_0330	PF05000	RNA polymerase Rpb1, domain 4
THII_0331	PF00072	Response regulator receiver domain
THII_0331	PF00512	His Kinase A (phospho-acceptor) domain
THII_0331	PF01627	Hpt domain
THII_0331	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0331	PF08447	PAS fold
THII_0331	PF13426	PAS domain
THII_0333	PF12729	THII_0333
THII_0334	PF00034	Cytochrome c
THII_0335	PF00115	Cytochrome C and Quinol oxidase polypeptide I
THII_0336	PF07728	AAA domain (dynein-related subfamily)
THII_0336	PF08406	THII_0336
THII_0338	PF12801	THII_0338
THII_0339	PF00092	von Willebrand factor type A domain
THII_0341	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_0344	PF01381	Helix-turn-helix
THII_0345	PF05685	Putative restriction endonuclease
THII_0346	PF05685	Putative restriction endonuclease
THII_0347	PF00082	Subtilase family
THII_0348	PF03969	AFG1-like ATPase
THII_0349	PF00011	Hsp20/alpha crystallin family
THII_0350	PF00512	His Kinase A (phospho-acceptor) domain
THII_0350	PF00672	HAMP domain
THII_0350	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0350	PF02743	Cache domain
THII_0351	PF04371	Porphyromonas-type peptidyl-arginine deiminase
THII_0352	PF05685	Putative restriction endonuclease
THII_0353	PF00795	Carbon-nitrogen hydrolase
THII_0354	PF00072	Response regulator receiver domain
THII_0354	PF00512	His Kinase A (phospho-acceptor) domain
THII_0354	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0355	PF01145	SPFH domain / Band 7 family
THII_0355	PF15975	THII_0355
THII_0356	PF07290	THII_0356
THII_0359	PF02542	YgbB family
THII_0360	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
THII_0361	PF04977	Septum formation initiator
THII_0364	PF08003	Protein of unknown function (DUF1698)
THII_0365	PF01634	ATP phosphoribosyltransferase
THII_0366	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
THII_0367	PF00117	Glutamine amidotransferase class-I
THII_0369	PF07788	THII_0369
THII_0369	PF12644	THII_0369
THII_0375	PF13469	Sulfotransferase family
THII_0376	PF05685	Putative restriction endonuclease
THII_0377	PF15919	THII_0377
THII_0379	PF00365	Phosphofructokinase
THII_0381	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
THII_0382	PF01297	Periplasmic solute binding protein family
THII_0383	PF00005	ABC transporter
THII_0384	PF00950	THII_0384
THII_0386	PF00122	E1-E2 ATPase
THII_0386	PF00689	Cation transporting ATPase, C-terminus
THII_0386	PF00690	Cation transporter/ATPase, N-terminus
THII_0386	PF00702	haloacid dehalogenase-like hydrolase
THII_0387	PF01724	Domain of unknown function DUF29
THII_0388	PF02492	CobW/HypB/UreG, nucleotide-binding domain
THII_0388	PF07683	Cobalamin synthesis protein cobW C-terminal domain
THII_0389	PF00753	Metallo-beta-lactamase superfamily
THII_0391	PF01927	THII_0391
THII_0391	PF14451	THII_0391
THII_0392	PF02152	Dihydroneopterin aldolase
THII_0393	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
THII_0394	PF13561	Enoyl-(Acyl carrier protein) reductase
THII_0395	PF02636	Putative S-adenosyl-L-methionine-dependent methyltransferase
THII_0397	PF01381	Helix-turn-helix
THII_0398	PF05973	THII_0398
THII_0399	PF05016	Plasmid stabilisation system protein
THII_0402	PF03080	THII_0402
THII_0407	PF00271	Helicase conserved C-terminal domain
THII_0407	PF04408	Helicase associated domain (HA2)
THII_0407	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
THII_0407	PF11898	THII_0407
THII_0408	PF05050	Methyltransferase FkbM domain
THII_0409	PF05050	Methyltransferase FkbM domain
THII_0410	PF01171	PP-loop family
THII_0410	PF09179	TilS substrate binding domain
THII_0410	PF11734	TilS substrate C-terminal domain
THII_0411	PF00183	Hsp90 protein
THII_0411	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0412	PF03848	Tellurite resistance protein TehB
THII_0413	PF00293	NUDIX domain
THII_0413	PF14803	Nudix N-terminal
THII_0414	PF02698	DUF218 domain
THII_0415	PF00041	Fibronectin type III domain
THII_0416	PF13353	4Fe-4S single cluster domain
THII_0417	PF01132	Elongation factor P (EF-P) OB domain
THII_0417	PF08207	Elongation factor P (EF-P) KOW-like domain
THII_0417	PF09285	Elongation factor P, C-terminal
THII_0418	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
THII_0419	PF04376	THII_0419
THII_0419	PF04377	THII_0419
THII_0420	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THII_0420	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
THII_0421	PF01590	GAF domain
THII_0421	PF01966	HD domain
THII_0421	PF13487	HD domain
THII_0422	PF10087	THII_0422
THII_0423	PF00437	Type II/IV secretion system protein
THII_0423	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
THII_0424	PF03065	Glycosyl hydrolase family 57
THII_0425	PF00398	Ribosomal RNA adenine dimethylase
THII_0426	PF00565	Staphylococcal nuclease homologue
THII_0427	PF01724	Domain of unknown function DUF29
THII_0428	PF07788	THII_0428
THII_0428	PF12644	THII_0428
THII_0429	PF03160	Calx-beta domain
THII_0430	PF13085	2Fe-2S iron-sulfur cluster binding domain
THII_0430	PF13534	4Fe-4S dicluster domain
THII_0431	PF00890	FAD binding domain
THII_0431	PF02910	Fumarate reductase flavoprotein C-term
THII_0432	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
THII_0433	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
THII_0434	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
THII_0435	PF01263	Aldose 1-epimerase
THII_0436	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
THII_0436	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
THII_0437	PF05685	Putative restriction endonuclease
THII_0438	PF01936	NYN domain
THII_0439	PF08241	Methyltransferase domain
THII_0441	PF00691	OmpA family
THII_0443	PF00072	Response regulator receiver domain
THII_0443	PF00512	His Kinase A (phospho-acceptor) domain
THII_0443	PF00672	HAMP domain
THII_0443	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0443	PF02743	Cache domain
THII_0443	PF08447	PAS fold
THII_0443	PF08448	PAS fold
THII_0443	PF13426	PAS domain
THII_0444	PF00072	Response regulator receiver domain
THII_0444	PF00512	His Kinase A (phospho-acceptor) domain
THII_0444	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0445	PF04542	Sigma-70 region 2
THII_0445	PF04545	Sigma-70, region 4
THII_0446	PF00535	Glycosyl transferase family 2
THII_0447	PF10066	THII_0447
THII_0448	PF00916	THII_0448
THII_0448	PF01740	STAS domain
THII_0449	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_0449	PF00672	HAMP domain
THII_0449	PF02743	Cache domain
THII_0450	PF12838	4Fe-4S dicluster domain
THII_0450	PF13187	4Fe-4S dicluster domain
THII_0452	PF00656	Caspase domain
THII_0452	PF08239	Bacterial SH3 domain
THII_0452	PF13308	YARHG domain
THII_0453	PF00400	WD domain, G-beta repeat
THII_0454	PF08780	Nucleotidyltransferase substrate binding protein like
THII_0455	PF01909	Nucleotidyltransferase domain
THII_0457	PF01850	PIN domain
THII_0459	PF07610	THII_0459
THII_0461	PF04199	Putative cyclase
THII_0463	PF00390	Malic enzyme, N-terminal domain
THII_0463	PF01515	Phosphate acetyl/butaryl transferase
THII_0463	PF03949	Malic enzyme, NAD binding domain
THII_0464	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
THII_0465	PF07927	YcfA-like protein
THII_0467	PF05685	Putative restriction endonuclease
THII_0468	PF05685	Putative restriction endonuclease
THII_0469	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
THII_0470	PF12804	MobA-like NTP transferase domain
THII_0471	PF02625	XdhC and CoxI family
THII_0471	PF13478	XdhC Rossmann domain
THII_0472	PF00111	2Fe-2S iron-sulfur cluster binding domain
THII_0472	PF01799	[2Fe-2S] binding domain
THII_0473	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
THII_0474	PF01327	Polypeptide deformylase
THII_0475	PF00551	Formyl transferase
THII_0475	PF02911	Formyl transferase, C-terminal domain
THII_0476	PF05685	Putative restriction endonuclease
THII_0482	PF01139	tRNA-splicing ligase RtcB
THII_0482	PF14890	Intein splicing domain
THII_0485	PF00005	ABC transporter
THII_0486	PF02687	THII_0486
THII_0486	PF12704	MacB-like periplasmic core domain
THII_0487	PF00005	ABC transporter
THII_0488	PF02687	THII_0488
THII_0488	PF12704	MacB-like periplasmic core domain
THII_0491	PF02630	SCO1/SenC
THII_0492	PF00072	Response regulator receiver domain
THII_0492	PF00158	Sigma-54 interaction domain
THII_0493	PF01724	Domain of unknown function DUF29
THII_0496	PF01797	Transposase IS200 like
THII_0498	PF01850	PIN domain
THII_0500	PF00069	Protein kinase domain
THII_0500	PF00072	Response regulator receiver domain
THII_0500	PF00512	His Kinase A (phospho-acceptor) domain
THII_0500	PF01590	GAF domain
THII_0500	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0500	PF13191	AAA ATPase domain
THII_0503	PF02424	ApbE family
THII_0504	PF05787	Bacterial protein of unknown function (DUF839)
THII_0505	PF03160	Calx-beta domain
THII_0506	PF03160	Calx-beta domain
THII_0509	PF02384	N-6 DNA Methylase
THII_0509	PF12950	TaqI-like C-terminal specificity domain
THII_0511	PF03160	Calx-beta domain
THII_0512	PF01709	Transcriptional regulator
THII_0513	PF02075	Crossover junction endodeoxyribonuclease RuvC
THII_0514	PF01330	RuvA N terminal domain
THII_0514	PF07499	RuvA, C-terminal domain
THII_0514	PF14520	Helix-hairpin-helix domain
THII_0515	PF00561	alpha/beta hydrolase fold
THII_0517	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
THII_0518	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
THII_0519	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
THII_0520	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
THII_0521	PF13711	THII_0521
THII_0522	PF10387	Protein of unknown function (DUF2442)
THII_0523	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
THII_0524	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_0526	PF05685	Putative restriction endonuclease
THII_0527	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
THII_0527	PF10531	SLBB domain
THII_0527	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
THII_0528	PF13302	Acetyltransferase (GNAT) domain
THII_0531	PF10049	THII_0531
THII_0532	PF01724	Domain of unknown function DUF29
THII_0533	PF00463	Isocitrate lyase family
THII_0534	PF01274	Malate synthase
THII_0535	PF04545	Sigma-70, region 4
THII_0536	PF05685	Putative restriction endonuclease
THII_0537	PF00266	Aminotransferase class-V
THII_0538	PF01583	Adenylylsulphate kinase
THII_0540	PF00072	Response regulator receiver domain
THII_0541	PF00512	His Kinase A (phospho-acceptor) domain
THII_0542	PF00072	Response regulator receiver domain
THII_0542	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_0543	PF04317	THII_0543
THII_0544	PF05128	THII_0544
THII_0545	PF01724	Domain of unknown function DUF29
THII_0546	PF04014	Antidote-toxin recognition MazE
THII_0547	PF01850	PIN domain
THII_0549	PF00072	Response regulator receiver domain
THII_0549	PF01339	CheB methylesterase
THII_0550	PF01739	CheR methyltransferase, SAM binding domain
THII_0550	PF03705	CheR methyltransferase, all-alpha domain
THII_0551	PF03130	PBS lyase HEAT-like repeat
THII_0551	PF13646	HEAT repeats
THII_0552	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_0553	PF01584	CheW-like domain
THII_0554	PF01584	CheW-like domain
THII_0554	PF01627	Hpt domain
THII_0554	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0554	PF02895	Signal transducing histidine kinase, homodimeric domain
THII_0555	PF00072	Response regulator receiver domain
THII_0556	PF15919	THII_0556
THII_0557	PF07927	YcfA-like protein
THII_0558	PF00696	Amino acid kinase family
THII_0559	PF03937	Flavinator of succinate dehydrogenase
THII_0560	PF00924	Mechanosensitive ion channel
THII_0560	PF13458	Periplasmic binding protein
THII_0561	PF01541	GIY-YIG catalytic domain
THII_0561	PF02151	UvrB/uvrC motif
THII_0561	PF08459	UvrC Helix-hairpin-helix N-terminal
THII_0561	PF14520	Helix-hairpin-helix domain
THII_0562	PF01066	CDP-alcohol phosphatidyltransferase
THII_0565	PF01930	Domain of unknown function DUF83
THII_0566	PF09827	CRISPR associated protein Cas2
THII_0567	PF01867	CRISPR associated protein Cas1
THII_0568	PF15919	THII_0568
THII_0569	PF17262	THII_0569
THII_0570	PF00270	DEAD/DEAH box helicase
THII_0570	PF00271	Helicase conserved C-terminal domain
THII_0571	PF06769	Plasmid encoded toxin Txe
THII_0572	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_0573	PF09704	CRISPR-associated protein (Cas_Cas5)
THII_0574	PF05107	THII_0574
THII_0575	PF09484	THII_0575
THII_0578	PF00109	Beta-ketoacyl synthase, N-terminal domain
THII_0578	PF02801	Beta-ketoacyl synthase, C-terminal domain
THII_0579	PF07977	FabA-like domain
THII_0584	PF01625	Peptide methionine sulfoxide reductase
THII_0585	PF05036	Sporulation related domain
THII_0586	PF01913	Formylmethanofuran-tetrahydromethanopterin formyltransferase
THII_0586	PF02741	FTR, proximal lobe
THII_0587	PF01493	GXGXG motif
THII_0588	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
THII_0589	PF00263	THII_0589
THII_0589	PF03958	Bacterial type II/III secretion system short domain
THII_0590	PF11356	Type IV pilus biogenesis
THII_0592	PF00378	Enoyl-CoA hydratase/isomerase family
THII_0592	PF00551	Formyl transferase
THII_0592	PF02911	Formyl transferase, C-terminal domain
THII_0593	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
THII_0594	PF08245	Mur ligase middle domain
THII_0595	PF00464	Serine hydroxymethyltransferase
THII_0596	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
THII_0596	PF01872	RibD C-terminal domain
THII_0597	PF13440	THII_0597
THII_0598	PF13469	Sulfotransferase family
THII_0599	PF02470	THII_0599
THII_0600	PF03886	Protein of unknown function (DUF330)
THII_0601	PF07007	Protein of unknown function (DUF1311)
THII_0603	PF00521	DNA gyrase/topoisomerase IV, subunit A
THII_0603	PF03989	DNA gyrase C-terminal domain, beta-propeller
THII_0604	PF00893	Small Multidrug Resistance protein
THII_0605	PF02348	Cytidylyltransferase
THII_0608	PF05685	Putative restriction endonuclease
THII_0610	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
THII_0611	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
THII_0611	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
THII_0612	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
THII_0612	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
THII_0613	PF02635	DsrE/DsrF-like family
THII_0614	PF02635	DsrE/DsrF-like family
THII_0615	PF04077	DsrH like protein
THII_0616	PF04358	DsrC like protein
THII_0617	PF02665	Nitrate reductase gamma subunit
THII_0618	PF13183	4Fe-4S dicluster domain
THII_0619	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_0619	PF13187	4Fe-4S dicluster domain
THII_0619	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
THII_0621	PF13247	4Fe-4S dicluster domain
THII_0622	PF03916	THII_0622
THII_0623	PF00591	Glycosyl transferase family, a/b domain
THII_0623	PF02885	Glycosyl transferase family, helical bundle domain
THII_0626	PF16576	THII_0626
THII_0627	PF00873	AcrB/AcrD/AcrF family
THII_0634	PF00580	UvrD/REP helicase N-terminal domain
THII_0634	PF13361	UvrD-like helicase C-terminal domain
THII_0636	PF00072	Response regulator receiver domain
THII_0636	PF00512	His Kinase A (phospho-acceptor) domain
THII_0636	PF00989	PAS fold
THII_0636	PF01590	GAF domain
THII_0636	PF01627	Hpt domain
THII_0636	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0636	PF08447	PAS fold
THII_0636	PF13426	PAS domain
THII_0637	PF00534	Glycosyl transferases group 1
THII_0638	PF02350	UDP-N-acetylglucosamine 2-epimerase
THII_0639	PF03808	THII_0639
THII_0640	PF02463	RecF/RecN/SMC N terminal domain
THII_0640	PF06470	SMC proteins Flexible Hinge Domain
THII_0641	PF04354	ZipA, C-terminal FtsZ-binding domain
THII_0642	PF05711	Macrocin-O-methyltransferase (TylF)
THII_0643	PF01447	Thermolysin metallopeptidase, catalytic domain
THII_0643	PF02868	Thermolysin metallopeptidase, alpha-helical domain
THII_0643	PF07504	Fungalysin/Thermolysin Propeptide Motif
THII_0644	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
THII_0645	PF05860	haemagglutination activity domain
THII_0646	PF01979	Amidohydrolase family
THII_0647	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
THII_0647	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
THII_0648	PF00156	Phosphoribosyl transferase domain
THII_0649	PF03652	Uncharacterised protein family (UPF0081)
THII_0650	PF02622	Uncharacterized ACR, COG1678
THII_0651	PF03544	Gram-negative bacterial TonB protein C-terminal
THII_0653	PF08410	THII_0653
THII_0655	PF10119	THII_0655
THII_0655	PF13847	Methyltransferase domain
THII_0657	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
THII_0657	PF03466	LysR substrate binding domain
THII_0658	PF00437	Type II/IV secretion system protein
THII_0659	PF00437	Type II/IV secretion system protein
THII_0660	PF00437	Type II/IV secretion system protein
THII_0662	PF00005	ABC transporter
THII_0663	PF02569	Pantoate-beta-alanine ligase
THII_0664	PF09949	THII_0664
THII_0665	PF13229	Right handed beta helix region
THII_0666	PF13229	Right handed beta helix region
THII_0667	PF00814	Glycoprotease family
THII_0669	PF13419	Haloacid dehalogenase-like hydrolase
THII_0670	PF13489	Methyltransferase domain
THII_0673	PF03062	THII_0673
THII_0674	PF00501	AMP-binding enzyme
THII_0674	PF13193	AMP-binding enzyme C-terminal domain
THII_0676	PF00550	Phosphopantetheine attachment site
THII_0677	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
THII_0677	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
THII_0678	PF03597	THII_0678
THII_0681	PF00528	Binding-protein-dependent transport system inner membrane component
THII_0682	PF00528	Binding-protein-dependent transport system inner membrane component
THII_0683	PF01790	THII_0683
THII_0684	PF04773	FecR protein
THII_0686	PF00072	Response regulator receiver domain
THII_0686	PF04397	LytTr DNA-binding domain
THII_0687	PF06580	THII_0687
THII_0688	PF01841	Transglutaminase-like superfamily
THII_0688	PF08379	THII_0688
THII_0689	PF06245	THII_0689
THII_0692	PF05626	THII_0692
THII_0694	PF01225	Mur ligase family, catalytic domain
THII_0694	PF02875	Mur ligase family, glutamate ligase domain
THII_0694	PF08245	Mur ligase middle domain
THII_0695	PF02441	Flavoprotein
THII_0697	PF14072	THII_0697
THII_0699	PF13481	AAA domain
THII_0699	PF13541	Subunit ChlI of Mg-chelatase
THII_0700	PF02493	MORN repeat
THII_0701	PF03379	THII_0701
THII_0702	PF13191	AAA ATPase domain
THII_0703	PF03306	Alpha-acetolactate decarboxylase
THII_0704	PF03306	Alpha-acetolactate decarboxylase
THII_0705	PF07719	Tetratricopeptide repeat
THII_0705	PF13414	TPR repeat
THII_0705	PF13424	Tetratricopeptide repeat
THII_0705	PF13844	Glycosyl transferase family 41
THII_0706	PF06094	AIG2-like family
THII_0707	PF01272	Transcription elongation factor, GreA/GreB, C-term
THII_0707	PF03449	Transcription elongation factor, N-terminal
THII_0708	PF02142	MGS-like domain
THII_0708	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
THII_0708	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
THII_0709	PF00117	Glutamine amidotransferase class-I
THII_0709	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
THII_0711	PF14467	Domain of unknown function (DUF4426)
THII_0712	PF00202	Aminotransferase class-III
THII_0713	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
THII_0713	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
THII_0714	PF00480	ROK family
THII_0715	PF00005	ABC transporter
THII_0716	PF00535	Glycosyl transferase family 2
THII_0717	PF00535	Glycosyl transferase family 2
THII_0717	PF13469	Sulfotransferase family
THII_0719	PF08003	Protein of unknown function (DUF1698)
THII_0721	PF09913	THII_0721
THII_0723	PF00303	Thymidylate synthase
THII_0724	PF01555	DNA methylase
THII_0725	PF13231	THII_0725
THII_0726	PF00202	Aminotransferase class-III
THII_0727	PF02096	60Kd inner membrane protein
THII_0727	PF14849	YidC periplasmic domain
THII_0728	PF00468	Ribosomal protein L34
THII_0729	PF00712	DNA polymerase III beta subunit, N-terminal domain
THII_0729	PF02767	DNA polymerase III beta subunit, central domain
THII_0729	PF02768	DNA polymerase III beta subunit, C-terminal domain
THII_0730	PF13231	THII_0730
THII_0731	PF09594	THII_0731
THII_0732	PF03706	THII_0732
THII_0733	PF01522	Polysaccharide deacetylase
THII_0734	PF00535	Glycosyl transferase family 2
THII_0735	PF00685	Sulfotransferase domain
THII_0736	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
THII_0737	PF16363	THII_0737
THII_0738	PF00535	Glycosyl transferase family 2
THII_0739	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
THII_0740	PF00551	Formyl transferase
THII_0741	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
THII_0743	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
THII_0744	PF00657	GDSL-like Lipase/Acylhydrolase
THII_0745	PF13205	Bacterial Ig-like domain
THII_0745	PF13229	Right handed beta helix region
THII_0746	PF01451	Low molecular weight phosphotyrosine protein phosphatase
THII_0747	PF03602	Conserved hypothetical protein 95
THII_0748	PF00009	Elongation factor Tu GTP binding domain
THII_0748	PF03144	Elongation factor Tu domain 2
THII_0748	PF16658	THII_0748
THII_0749	PF13641	Glycosyltransferase like family 2
THII_0750	PF00072	Response regulator receiver domain
THII_0750	PF00512	His Kinase A (phospho-acceptor) domain
THII_0750	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0750	PF13185	GAF domain
THII_0751	PF00072	Response regulator receiver domain
THII_0751	PF00512	His Kinase A (phospho-acceptor) domain
THII_0751	PF00989	PAS fold
THII_0751	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0752	PF00206	Lyase
THII_0752	PF14698	Argininosuccinate lyase C-terminal
THII_0753	PF12386	THII_0753
THII_0754	PF03030	Inorganic H+ pyrophosphatase
THII_0755	PF16998	THII_0755
THII_0756	PF01650	Peptidase C13 family
THII_0756	PF03160	Calx-beta domain
THII_0756	PF05345	Putative Ig domain
THII_0756	PF13385	Concanavalin A-like lectin/glucanases superfamily
THII_0757	PF01734	Patatin-like phospholipase
THII_0760	PF00483	Nucleotidyl transferase
THII_0760	PF00535	Glycosyl transferase family 2
THII_0761	PF09913	THII_0761
THII_0762	PF00005	ABC transporter
THII_0762	PF00664	ABC transporter transmembrane region
THII_0764	PF06508	Queuosine biosynthesis protein QueC
THII_0765	PF00691	OmpA family
THII_0767	PF03739	THII_0767
THII_0768	PF00313	'Cold-shock' DNA-binding domain
THII_0770	PF00485	Phosphoribulokinase / Uridine kinase family
THII_0772	PF01841	Transglutaminase-like superfamily
THII_0772	PF11992	THII_0772
THII_0772	PF13559	THII_0772
THII_0773	PF01882	THII_0773
THII_0774	PF00072	Response regulator receiver domain
THII_0774	PF00512	His Kinase A (phospho-acceptor) domain
THII_0774	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0774	PF08447	PAS fold
THII_0774	PF08448	PAS fold
THII_0774	PF13185	GAF domain
THII_0774	PF13426	PAS domain
THII_0775	PF00072	Response regulator receiver domain
THII_0775	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0777	PF00563	EAL domain
THII_0777	PF00989	PAS fold
THII_0777	PF00990	GGDEF domain
THII_0777	PF03924	CHASE domain
THII_0777	PF13426	PAS domain
THII_0778	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_0779	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_0780	PF00448	SRP54-type protein, GTPase domain
THII_0780	PF02881	SRP54-type protein, helical bundle domain
THII_0781	PF00005	ABC transporter
THII_0782	PF02687	THII_0782
THII_0783	PF01724	Domain of unknown function DUF29
THII_0784	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
THII_0784	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
THII_0785	PF00456	Transketolase, thiamine diphosphate binding domain
THII_0785	PF02779	Transketolase, pyrimidine binding domain
THII_0785	PF02780	Transketolase, C-terminal domain
THII_0786	PF14200	Ricin-type beta-trefoil lectin domain-like
THII_0789	PF12784	THII_0789
THII_0792	PF01381	Helix-turn-helix
THII_0793	PF05685	Putative restriction endonuclease
THII_0794	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
THII_0795	PF04055	Radical SAM superfamily
THII_0797	PF00082	Subtilase family
THII_0798	PF02706	Chain length determinant protein
THII_0798	PF13614	AAA domain
THII_0798	PF13807	THII_0798
THII_0799	PF02563	Polysaccharide biosynthesis/export protein
THII_0799	PF10531	SLBB domain
THII_0800	PF10082	THII_0800
THII_0801	PF01850	PIN domain
THII_0802	PF00072	Response regulator receiver domain
THII_0803	PF00512	His Kinase A (phospho-acceptor) domain
THII_0803	PF00515	Tetratricopeptide repeat
THII_0803	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0803	PF13414	TPR repeat
THII_0805	PF00117	Glutamine amidotransferase class-I
THII_0806	PF01494	FAD binding domain
THII_0807	PF00929	Exonuclease
THII_0807	PF08411	Exonuclease C-terminal
THII_0808	PF00005	ABC transporter
THII_0809	PF02687	THII_0809
THII_0809	PF12704	MacB-like periplasmic core domain
THII_0810	PF13437	HlyD family secretion protein
THII_0811	PF12844	Helix-turn-helix domain
THII_0814	PF00293	NUDIX domain
THII_0815	PF09836	Uncharacterized protein conserved in bacteria (DUF2063)
THII_0816	PF05114	Protein of unknown function (DUF692)
THII_0821	PF04357	THII_0821
THII_0822	PF02397	THII_0822
THII_0823	PF01734	Patatin-like phospholipase
THII_0824	PF02965	Vitamin B12 dependent methionine synthase, activation domain
THII_0828	PF12770	THII_0828
THII_0829	PF00535	Glycosyl transferase family 2
THII_0830	PF00535	Glycosyl transferase family 2
THII_0830	PF02709	N-terminal domain of galactosyltransferase
THII_0831	PF09559	THII_0831
THII_0833	PF03692	THII_0833
THII_0834	PF00375	Sodium:dicarboxylate symporter family
THII_0835	PF00230	Major intrinsic protein
THII_0836	PF09361	THII_0836
THII_0837	PF13561	Enoyl-(Acyl carrier protein) reductase
THII_0838	PF05233	THII_0838
THII_0838	PF07879	THII_0838
THII_0839	PF00108	Thiolase, N-terminal domain
THII_0839	PF02803	Thiolase, C-terminal domain
THII_0841	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
THII_0842	PF00176	SNF2 family N-terminal domain
THII_0842	PF00271	Helicase conserved C-terminal domain
THII_0843	PF13855	Leucine rich repeat
THII_0844	PF13649	Methyltransferase domain
THII_0845	PF03814	THII_0845
THII_0846	PF00122	E1-E2 ATPase
THII_0846	PF00702	haloacid dehalogenase-like hydrolase
THII_0847	PF02669	THII_0847
THII_0849	PF11743	THII_0849
THII_0850	PF04386	Stringent starvation protein B
THII_0851	PF02167	Cytochrome C1 family
THII_0852	PF00032	Cytochrome b(C-terminal)/b6/petD
THII_0852	PF00033	Cytochrome b(N-terminal)/b6/petB
THII_0853	PF00355	Rieske [2Fe-2S] domain
THII_0853	PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
THII_0854	PF00263	THII_0854
THII_0854	PF03958	Bacterial type II/III secretion system short domain
THII_0856	PF07963	Prokaryotic N-terminal methylation motif
THII_0856	PF08334	Type II secretion system (T2SS), protein G
THII_0857	PF07963	Prokaryotic N-terminal methylation motif
THII_0858	PF07963	Prokaryotic N-terminal methylation motif
THII_0859	PF07963	Prokaryotic N-terminal methylation motif
THII_0861	PF07238	PilZ domain
THII_0862	PF13561	Enoyl-(Acyl carrier protein) reductase
THII_0863	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
THII_0864	PF01022	Bacterial regulatory protein, arsR family
THII_0865	PF01758	Sodium Bile acid symporter family
THII_0866	PF03773	THII_0866
THII_0867	PF13192	Thioredoxin domain
THII_0868	PF01451	Low molecular weight phosphotyrosine protein phosphatase
THII_0870	PF00692	dUTPase
THII_0871	PF10130	THII_0871
THII_0872	PF00400	WD domain, G-beta repeat
THII_0873	PF13676	TIR domain
THII_0875	PF05175	Methyltransferase small domain
THII_0876	PF00574	Clp protease
THII_0877	PF00072	Response regulator receiver domain
THII_0877	PF00563	EAL domain
THII_0877	PF00990	GGDEF domain
THII_0878	PF00072	Response regulator receiver domain
THII_0879	PF01061	THII_0879
THII_0881	PF02016	LD-carboxypeptidase
THII_0882	PF00892	EamA-like transporter family
THII_0883	PF05685	Putative restriction endonuclease
THII_0884	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
THII_0885	PF05168	HEPN domain
THII_0886	PF03737	Demethylmenaquinone methyltransferase
THII_0887	PF01724	Domain of unknown function DUF29
THII_0889	PF05729	NACHT domain
THII_0890	PF00350	Dynamin family
THII_0891	PF00749	tRNA synthetases class I (E and Q), catalytic domain
THII_0894	PF12784	THII_0894
THII_0896	PF01724	Domain of unknown function DUF29
THII_0897	PF15919	THII_0897
THII_0901	PF16576	THII_0901
THII_0902	PF00873	AcrB/AcrD/AcrF family
THII_0903	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
THII_0904	PF07007	Protein of unknown function (DUF1311)
THII_0905	PF00082	Subtilase family
THII_0906	PF00004	ATPase family associated with various cellular activities (AAA)
THII_0909	PF05685	Putative restriction endonuclease
THII_0910	PF05036	Sporulation related domain
THII_0910	PF13401	AAA domain
THII_0911	PF04325	Protein of unknown function (DUF465)
THII_0912	PF05685	Putative restriction endonuclease
THII_0914	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
THII_0915	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
THII_0915	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
THII_0915	PF00374	Nickel-dependent hydrogenase
THII_0918	PF13175	AAA ATPase domain
THII_0918	PF13304	AAA domain
THII_0919	PF00072	Response regulator receiver domain
THII_0919	PF00512	His Kinase A (phospho-acceptor) domain
THII_0919	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0920	PF04055	Radical SAM superfamily
THII_0920	PF06968	Biotin and Thiamin Synthesis associated domain
THII_0921	PF00072	Response regulator receiver domain
THII_0921	PF00512	His Kinase A (phospho-acceptor) domain
THII_0921	PF00672	HAMP domain
THII_0921	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0924	PF00560	Leucine Rich Repeat
THII_0924	PF13855	Leucine rich repeat
THII_0926	PF13231	THII_0926
THII_0927	PF00884	Sulfatase
THII_0927	PF16347	THII_0927
THII_0928	PF04002	RadC-like JAB domain
THII_0929	PF02441	Flavoprotein
THII_0929	PF04127	DNA / pantothenate metabolism flavoprotein
THII_0935	PF00929	Exonuclease
THII_0936	PF00293	NUDIX domain
THII_0937	PF00072	Response regulator receiver domain
THII_0938	PF08242	Methyltransferase domain
THII_0938	PF10119	THII_0938
THII_0939	PF02666	THII_0939
THII_0940	PF01464	Transglycosylase SLT domain
THII_0940	PF01476	LysM domain
THII_0942	PF07819	PGAP1-like protein
THII_0943	PF00072	Response regulator receiver domain
THII_0943	PF00196	Bacterial regulatory proteins, luxR family
THII_0944	PF05228	THII_0944
THII_0944	PF07730	Histidine kinase
THII_0944	PF08447	PAS fold
THII_0947	PF01476	LysM domain
THII_0947	PF08239	Bacterial SH3 domain
THII_0948	PF06167	Glucose-regulated metallo-peptidase M90
THII_0949	PF00919	Uncharacterized protein family UPF0004
THII_0949	PF04055	Radical SAM superfamily
THII_0950	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_0950	PF12729	THII_0950
THII_0951	PF01502	Phosphoribosyl-AMP cyclohydrolase
THII_0952	PF01488	Shikimate / quinate 5-dehydrogenase
THII_0952	PF07896	Protein of unknown function (DUF1674)
THII_0952	PF08501	Shikimate dehydrogenase substrate binding domain
THII_0953	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
THII_0953	PF13181	Tetratricopeptide repeat
THII_0953	PF13414	TPR repeat
THII_0954	PF01724	Domain of unknown function DUF29
THII_0955	PF00092	von Willebrand factor type A domain
THII_0955	PF13531	Bacterial extracellular solute-binding protein
THII_0956	PF02493	MORN repeat
THII_0958	PF05685	Putative restriction endonuclease
THII_0960	PF10047	THII_0960
THII_0961	PF02445	Quinolinate synthetase A protein
THII_0962	PF00271	Helicase conserved C-terminal domain
THII_0962	PF04851	Type III restriction enzyme, res subunit
THII_0963	PF00042	Globin
THII_0964	PF12770	THII_0964
THII_0964	PF13424	Tetratricopeptide repeat
THII_0965	PF09917	Uncharacterized protein conserved in bacteria (DUF2147)
THII_0966	PF12146	Putative lysophospholipase
THII_0967	PF00072	Response regulator receiver domain
THII_0967	PF00196	Bacterial regulatory proteins, luxR family
THII_0968	PF00072	Response regulator receiver domain
THII_0968	PF00512	His Kinase A (phospho-acceptor) domain
THII_0968	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_0969	PF01841	Transglutaminase-like superfamily
THII_0970	PF01882	THII_0970
THII_0971	PF07726	ATPase family associated with various cellular activities (AAA)
THII_0972	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
THII_0973	PF00849	RNA pseudouridylate synthase
THII_0973	PF01479	S4 domain
THII_0980	PF01702	Queuine tRNA-ribosyltransferase
THII_0981	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_0982	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
THII_0982	PF10414	Sirohaem synthase dimerisation region
THII_0982	PF13241	Putative NAD(P)-binding
THII_0982	PF14824	Sirohaem biosynthesis protein central
THII_0983	PF01206	Sulfurtransferase TusA
THII_0984	PF13686	DsrE/DsrF/DrsH-like family
THII_0985	PF01565	FAD binding domain
THII_0987	PF05685	Putative restriction endonuclease
THII_0988	PF04932	THII_0988
THII_0991	PF10387	Protein of unknown function (DUF2442)
THII_0995	PF13665	THII_0995
THII_0997	PF09937	THII_0997
THII_0999	PF05954	Phage late control gene D protein (GPD)
THII_0999	PF06715	Gp5 C-terminal repeat (3 copies)
THII_1001	PF03400	THII_1001
THII_1002	PF03811	THII_1002
THII_1003	PF06812	THII_1003
THII_1004	PF05936	THII_1004
THII_1005	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
THII_1006	PF12770	THII_1006
THII_1006	PF13176	Tetratricopeptide repeat
THII_1006	PF13181	Tetratricopeptide repeat
THII_1006	PF13424	Tetratricopeptide repeat
THII_1007	PF03160	Calx-beta domain
THII_1007	PF03797	Autotransporter beta-domain
THII_1009	PF14331	THII_1009
THII_1010	PF05591	THII_1010
THII_1011	PF05943	THII_1011
THII_1012	PF05638	Protein of unknown function (DUF796)
THII_1013	PF04965	Gene 25-like lysozyme
THII_1014	PF05947	THII_1014
THII_1015	PF06996	THII_1015
THII_1016	PF00004	ATPase family associated with various cellular activities (AAA)
THII_1016	PF07724	AAA domain (Cdc48 subfamily)
THII_1016	PF10431	C-terminal, D2-small domain, of ClpB protein
THII_1017	PF02366	THII_1017
THII_1018	PF13431	Tetratricopeptide repeat
THII_1018	PF14559	Tetratricopeptide repeat
THII_1019	PF00072	Response regulator receiver domain
THII_1019	PF00512	His Kinase A (phospho-acceptor) domain
THII_1019	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1020	PF00072	Response regulator receiver domain
THII_1020	PF00512	His Kinase A (phospho-acceptor) domain
THII_1020	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1020	PF03924	CHASE domain
THII_1020	PF08448	PAS fold
THII_1020	PF13426	PAS domain
THII_1021	PF00072	Response regulator receiver domain
THII_1021	PF00990	GGDEF domain
THII_1021	PF08448	PAS fold
THII_1021	PF13426	PAS domain
THII_1024	PF04014	Antidote-toxin recognition MazE
THII_1025	PF00753	Metallo-beta-lactamase superfamily
THII_1026	PF01571	Aminomethyltransferase folate-binding domain
THII_1026	PF08669	Glycine cleavage T-protein C-terminal barrel domain
THII_1027	PF01551	Peptidase family M23
THII_1027	PF04225	Opacity-associated protein A LysM-like domain
THII_1028	PF09587	Bacterial capsule synthesis protein PGA_cap
THII_1029	PF00579	tRNA synthetases class I (W and Y)
THII_1029	PF01479	S4 domain
THII_1030	PF00694	Aconitase C-terminal domain
THII_1031	PF00180	Isocitrate/isopropylmalate dehydrogenase
THII_1032	PF01118	Semialdehyde dehydrogenase, NAD binding domain
THII_1032	PF02774	Semialdehyde dehydrogenase, dimerisation domain
THII_1034	PF01416	tRNA pseudouridine synthase
THII_1036	PF00072	Response regulator receiver domain
THII_1036	PF00512	His Kinase A (phospho-acceptor) domain
THII_1036	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1036	PF08447	PAS fold
THII_1036	PF08448	PAS fold
THII_1036	PF13426	PAS domain
THII_1037	PF00072	Response regulator receiver domain
THII_1037	PF00512	His Kinase A (phospho-acceptor) domain
THII_1037	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1038	PF00731	AIR carboxylase
THII_1039	PF02222	ATP-grasp domain
THII_1040	PF01447	Thermolysin metallopeptidase, catalytic domain
THII_1040	PF02868	Thermolysin metallopeptidase, alpha-helical domain
THII_1040	PF07504	Fungalysin/Thermolysin Propeptide Motif
THII_1043	PF03934	Type II secretion system (T2SS), protein K
THII_1045	PF07963	Prokaryotic N-terminal methylation motif
THII_1046	PF01661	Macro domain
THII_1049	PF01364	Peptidase family C25
THII_1049	PF08126	Propeptide_C25
THII_1050	PF00501	AMP-binding enzyme
THII_1050	PF00550	Phosphopantetheine attachment site
THII_1050	PF00668	Condensation domain
THII_1050	PF00975	Thioesterase domain
THII_1050	PF13193	AMP-binding enzyme C-terminal domain
THII_1051	PF13649	Methyltransferase domain
THII_1053	PF13672	Protein phosphatase 2C
THII_1054	PF08238	Sel1 repeat
THII_1056	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
THII_1057	PF01747	ATP-sulfurylase
THII_1057	PF14306	PUA-like domain
THII_1058	PF00400	WD domain, G-beta repeat
THII_1059	PF04754	THII_1059
THII_1060	PF03706	THII_1060
THII_1061	PF13489	Methyltransferase domain
THII_1062	PF01724	Domain of unknown function DUF29
THII_1063	PF01724	Domain of unknown function DUF29
THII_1064	PF01724	Domain of unknown function DUF29
THII_1065	PF01724	Domain of unknown function DUF29
THII_1066	PF01724	Domain of unknown function DUF29
THII_1067	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
THII_1070	PF08241	Methyltransferase domain
THII_1071	PF00534	Glycosyl transferases group 1
THII_1071	PF13439	Glycosyltransferase Family 4
THII_1074	PF11848	THII_1074
THII_1075	PF03683	THII_1075
THII_1077	PF12784	THII_1077
THII_1082	PF05685	Putative restriction endonuclease
THII_1083	PF01909	Nucleotidyltransferase domain
THII_1084	PF08780	Nucleotidyltransferase substrate binding protein like
THII_1085	PF01850	PIN domain
THII_1086	PF09957	THII_1086
THII_1089	PF01724	Domain of unknown function DUF29
THII_1090	PF01724	Domain of unknown function DUF29
THII_1091	PF00535	Glycosyl transferase family 2
THII_1092	PF12784	THII_1092
THII_1093	PF08242	Methyltransferase domain
THII_1095	PF04754	THII_1095
THII_1100	PF00583	Acetyltransferase (GNAT) family
THII_1100	PF13380	CoA binding domain
THII_1100	PF13549	ATP-grasp domain
THII_1100	PF13607	Succinyl-CoA ligase like flavodoxin domain
THII_1103	PF01797	Transposase IS200 like
THII_1104	PF16694	THII_1104
THII_1105	PF04452	RNA methyltransferase
THII_1106	PF00202	Aminotransferase class-III
THII_1108	PF01223	DNA/RNA non-specific endonuclease
THII_1110	PF13304	AAA domain
THII_1111	PF14103	THII_1111
THII_1112	PF00535	Glycosyl transferase family 2
THII_1112	PF13847	Methyltransferase domain
THII_1113	PF13650	Aspartyl protease
THII_1114	PF08241	Methyltransferase domain
THII_1115	PF05050	Methyltransferase FkbM domain
THII_1118	PF00582	Universal stress protein family
THII_1118	PF01925	THII_1118
THII_1121	PF00512	His Kinase A (phospho-acceptor) domain
THII_1121	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1122	PF00072	Response regulator receiver domain
THII_1122	PF00158	Sigma-54 interaction domain
THII_1122	PF02954	Bacterial regulatory protein, Fis family
THII_1126	PF00092	von Willebrand factor type A domain
THII_1127	PF13672	Protein phosphatase 2C
THII_1128	PF00069	Protein kinase domain
THII_1130	PF00072	Response regulator receiver domain
THII_1130	PF00512	His Kinase A (phospho-acceptor) domain
THII_1130	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1131	PF00072	Response regulator receiver domain
THII_1131	PF00512	His Kinase A (phospho-acceptor) domain
THII_1131	PF00672	HAMP domain
THII_1131	PF00989	PAS fold
THII_1131	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1131	PF02743	Cache domain
THII_1131	PF13426	PAS domain
THII_1132	PF02230	Phospholipase/Carboxylesterase
THII_1133	PF00483	Nucleotidyl transferase
THII_1135	PF05685	Putative restriction endonuclease
THII_1136	PF05685	Putative restriction endonuclease
THII_1137	PF05685	Putative restriction endonuclease
THII_1138	PF13186	Iron-sulfur cluster-binding domain
THII_1139	PF00535	Glycosyl transferase family 2
THII_1139	PF13578	Methyltransferase domain
THII_1140	PF00535	Glycosyl transferase family 2
THII_1140	PF13692	Glycosyl transferases group 1
THII_1141	PF00535	Glycosyl transferase family 2
THII_1142	PF13489	Methyltransferase domain
THII_1144	PF01385	THII_1144
THII_1144	PF07282	THII_1144
THII_1144	PF12323	THII_1144
THII_1145	PF14269	THII_1145
THII_1146	PF00239	Resolvase, N terminal domain
THII_1146	PF00376	MerR family regulatory protein
THII_1147	PF01385	THII_1147
THII_1147	PF07282	THII_1147
THII_1147	PF12323	THII_1147
THII_1148	PF09626	Dihaem cytochrome c
THII_1149	PF09086	Domain of unknown function (DUF1924)
THII_1150	PF01292	Prokaryotic cytochrome b561
THII_1150	PF09626	Dihaem cytochrome c
THII_1151	PF00571	CBS domain
THII_1151	PF01769	Divalent cation transporter
THII_1151	PF03448	MgtE intracellular N domain
THII_1152	PF01553	Acyltransferase
THII_1153	PF01928	CYTH domain
THII_1153	PF05235	CHAD domain
THII_1154	PF01266	FAD dependent oxidoreductase
THII_1155	PF07788	THII_1155
THII_1155	PF12644	THII_1155
THII_1156	PF08357	SEFIR domain
THII_1158	PF01078	Magnesium chelatase, subunit ChlI
THII_1158	PF13335	THII_1158
THII_1158	PF13541	Subunit ChlI of Mg-chelatase
THII_1159	PF04380	THII_1159
THII_1160	PF02677	THII_1160
THII_1161	PF00072	Response regulator receiver domain
THII_1161	PF00512	His Kinase A (phospho-acceptor) domain
THII_1161	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1162	PF03544	Gram-negative bacterial TonB protein C-terminal
THII_1164	PF02472	Biopolymer transport protein ExbD/TolR
THII_1165	PF01618	THII_1165
THII_1166	PF06537	THII_1166
THII_1167	PF13343	Bacterial extracellular solute-binding protein
THII_1168	PF00593	TonB dependent receptor
THII_1168	PF07715	TonB-dependent Receptor Plug Domain
THII_1169	PF01850	PIN domain
THII_1170	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_1173	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_1173	PF14602	Hexapeptide repeat of succinyl-transferase
THII_1173	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
THII_1174	PF00155	Aminotransferase class I and II
THII_1175	PF02576	Uncharacterised BCR, YhbC family COG0779
THII_1175	PF17384	THII_1175
THII_1176	PF00575	S1 RNA binding domain
THII_1176	PF08529	NusA N-terminal domain
THII_1176	PF13184	NusA-like KH domain
THII_1176	PF14520	Helix-hairpin-helix domain
THII_1177	PF00009	Elongation factor Tu GTP binding domain
THII_1177	PF03144	Elongation factor Tu domain 2
THII_1177	PF04760	Translation initiation factor IF-2, N-terminal region
THII_1177	PF08364	THII_1177
THII_1177	PF11987	Translation-initiation factor 2
THII_1178	PF02033	Ribosome-binding factor A
THII_1179	PF01509	TruB family pseudouridylate synthase (N terminal domain)
THII_1179	PF09157	Pseudouridine synthase II TruB, C-terminal
THII_1179	PF16198	THII_1179
THII_1180	PF00312	Ribosomal protein S15
THII_1181	PF00013	KH domain
THII_1181	PF00575	S1 RNA binding domain
THII_1181	PF01138	3' exoribonuclease family, domain 1
THII_1181	PF03725	3' exoribonuclease family, domain 2
THII_1181	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
THII_1182	PF08780	Nucleotidyltransferase substrate binding protein like
THII_1183	PF01909	Nucleotidyltransferase domain
THII_1189	PF00989	PAS fold
THII_1189	PF00990	GGDEF domain
THII_1189	PF13426	PAS domain
THII_1190	PF01476	LysM domain
THII_1191	PF00072	Response regulator receiver domain
THII_1191	PF00512	His Kinase A (phospho-acceptor) domain
THII_1191	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1193	PF10023	THII_1193
THII_1195	PF00953	Glycosyl transferase family 4
THII_1195	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
THII_1196	PF01225	Mur ligase family, catalytic domain
THII_1196	PF02875	Mur ligase family, glutamate ligase domain
THII_1196	PF08245	Mur ligase middle domain
THII_1197	PF01225	Mur ligase family, catalytic domain
THII_1197	PF02875	Mur ligase family, glutamate ligase domain
THII_1197	PF08245	Mur ligase middle domain
THII_1198	PF04999	THII_1198
THII_1199	PF01795	MraW methylase family
THII_1200	PF00795	Carbon-nitrogen hydrolase
THII_1202	PF03781	Sulfatase-modifying factor enzyme 1
THII_1204	PF00528	Binding-protein-dependent transport system inner membrane component
THII_1205	PF00005	ABC transporter
THII_1205	PF03459	TOBE domain
THII_1206	PF08495	THII_1206
THII_1206	PF10442	THII_1206
THII_1208	PF02355	Protein export membrane protein
THII_1208	PF07549	SecD/SecF GG Motif
THII_1209	PF02355	Protein export membrane protein
THII_1209	PF07549	SecD/SecF GG Motif
THII_1209	PF13721	SecD export protein N-terminal TM region
THII_1210	PF02699	Preprotein translocase subunit
THII_1211	PF01197	Ribosomal protein L31
THII_1212	PF00291	Pyridoxal-phosphate dependent enzyme
THII_1213	PF05685	Putative restriction endonuclease
THII_1214	PF00204	DNA gyrase B
THII_1214	PF00986	DNA gyrase B subunit, carboxyl terminus
THII_1214	PF01751	Toprim domain
THII_1214	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1217	PF00270	DEAD/DEAH box helicase
THII_1217	PF00271	Helicase conserved C-terminal domain
THII_1217	PF00570	HRDC domain
THII_1217	PF09382	RQC domain
THII_1217	PF16124	THII_1217
THII_1218	PF04235	THII_1218
THII_1219	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
THII_1219	PF02874	ATP synthase alpha/beta family, beta-barrel domain
THII_1219	PF16886	THII_1219
THII_1220	PF01991	ATP synthase (E/31 kDa) subunit
THII_1221	PF01990	ATP synthase (F/14-kDa) subunit
THII_1222	PF00137	ATP synthase subunit C
THII_1223	PF01496	V-type ATPase 116kDa subunit family
THII_1224	PF11295	THII_1224
THII_1225	PF00535	Glycosyl transferase family 2
THII_1226	PF07578	Lipid A Biosynthesis N-terminal domain
THII_1227	PF13231	THII_1227
THII_1228	PF09712	THII_1228
THII_1229	PF00239	Resolvase, N terminal domain
THII_1229	PF13411	MerR HTH family regulatory protein
THII_1233	PF00561	alpha/beta hydrolase fold
THII_1234	PF13649	Methyltransferase domain
THII_1235	PF00933	Glycosyl hydrolase family 3 N terminal domain
THII_1237	PF09414	RNA ligase
THII_1238	PF01207	Dihydrouridine synthase (Dus)
THII_1239	PF00588	SpoU rRNA Methylase family
THII_1239	PF08032	RNA 2'-O ribose methyltransferase substrate binding
THII_1240	PF09225	Restriction endonuclease PvuII
THII_1241	PF01381	Helix-turn-helix
THII_1242	PF01555	DNA methylase
THII_1243	PF00072	Response regulator receiver domain
THII_1243	PF00512	His Kinase A (phospho-acceptor) domain
THII_1243	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1243	PF12729	THII_1243
THII_1243	PF13185	GAF domain
THII_1244	PF00672	HAMP domain
THII_1244	PF02743	Cache domain
THII_1244	PF13185	GAF domain
THII_1245	PF01368	DHH family
THII_1245	PF02272	DHHA1 domain
THII_1246	PF00534	Glycosyl transferases group 1
THII_1246	PF02585	GlcNAc-PI de-N-acetylase
THII_1247	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_1248	PF11143	THII_1248
THII_1249	PF00291	Pyridoxal-phosphate dependent enzyme
THII_1249	PF00585	C-terminal regulatory domain of Threonine dehydratase
THII_1250	PF14489	QueF-like protein
THII_1251	PF02603	HPr Serine kinase N terminus
THII_1251	PF07475	HPr Serine kinase C-terminal domain
THII_1252	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
THII_1253	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
THII_1254	PF00309	THII_1254
THII_1254	PF04552	Sigma-54, DNA binding domain
THII_1254	PF04963	Sigma-54 factor, core binding domain
THII_1255	PF00005	ABC transporter
THII_1255	PF12399	Branched-chain amino acid ATP-binding cassette transporter
THII_1256	PF03968	OstA-like protein
THII_1257	PF06835	Lipopolysaccharide-assembly, LptC-related
THII_1258	PF08282	haloacid dehalogenase-like hydrolase
THII_1259	PF00571	CBS domain
THII_1259	PF01380	SIS domain
THII_1261	PF13358	DDE superfamily endonuclease
THII_1262	PF01710	Transposase
THII_1265	PF08241	Methyltransferase domain
THII_1266	PF04055	Radical SAM superfamily
THII_1266	PF13186	Iron-sulfur cluster-binding domain
THII_1266	PF13394	4Fe-4S single cluster domain
THII_1267	PF13614	AAA domain
THII_1268	PF00152	tRNA synthetases class II (D, K and N)
THII_1269	PF00814	Glycoprotease family
THII_1270	PF00476	DNA polymerase family A
THII_1270	PF01367	5'-3' exonuclease, C-terminal SAM fold
THII_1270	PF01612	3'-5' exonuclease
THII_1270	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
THII_1272	PF03934	Type II secretion system (T2SS), protein K
THII_1273	PF04321	RmlD substrate binding domain
THII_1274	PF03412	Peptidase C39 family
THII_1275	PF01370	NAD dependent epimerase/dehydratase family
THII_1276	PF13580	SIS domain
THII_1277	PF01464	Transglycosylase SLT domain
THII_1277	PF13511	THII_1277
THII_1278	PF01208	Uroporphyrinogen decarboxylase (URO-D)
THII_1281	PF01515	Phosphate acetyl/butaryl transferase
THII_1281	PF01575	MaoC like domain
THII_1282	PF01584	CheW-like domain
THII_1283	PF00072	Response regulator receiver domain
THII_1283	PF01584	CheW-like domain
THII_1283	PF01627	Hpt domain
THII_1283	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1285	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_1286	PF01584	CheW-like domain
THII_1287	PF00072	Response regulator receiver domain
THII_1288	PF00072	Response regulator receiver domain
THII_1290	PF08886	Glutamate-cysteine ligase
THII_1292	PF03029	Conserved hypothetical ATP binding protein
THII_1294	PF00071	Ras family
THII_1295	PF02674	THII_1295
THII_1296	PF00156	Phosphoribosyl transferase domain
THII_1296	PF13522	Glutamine amidotransferase domain
THII_1297	PF01053	Cys/Met metabolism PLP-dependent enzyme
THII_1299	PF07167	THII_1299
THII_1300	PF00773	RNB domain
THII_1301	PF00512	His Kinase A (phospho-acceptor) domain
THII_1301	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1301	PF02743	Cache domain
THII_1302	PF00994	Probable molybdopterin binding domain
THII_1303	PF00111	2Fe-2S iron-sulfur cluster binding domain
THII_1303	PF00970	Oxidoreductase FAD-binding domain
THII_1305	PF03739	THII_1305
THII_1306	PF00883	Cytosol aminopeptidase family, catalytic domain
THII_1306	PF02789	Cytosol aminopeptidase family, N-terminal domain
THII_1307	PF04364	DNA polymerase III chi subunit, HolC
THII_1308	PF14239	THII_1308
THII_1308	PF14279	THII_1308
THII_1310	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
THII_1310	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
THII_1310	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
THII_1310	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
THII_1311	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
THII_1311	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
THII_1311	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
THII_1311	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
THII_1313	PF02687	THII_1313
THII_1313	PF12704	MacB-like periplasmic core domain
THII_1314	PF00005	ABC transporter
THII_1315	PF07788	THII_1315
THII_1315	PF12644	THII_1315
THII_1316	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_1317	PF01008	Initiation factor 2 subunit family
THII_1319	PF04348	LppC putative lipoprotein
THII_1320	PF02021	Uncharacterised protein family UPF0102
THII_1321	PF00005	ABC transporter
THII_1323	PF02493	MORN repeat
THII_1324	PF01464	Transglycosylase SLT domain
THII_1324	PF14718	Soluble lytic murein transglycosylase L domain
THII_1325	PF01435	Peptidase family M48
THII_1326	PF02563	Polysaccharide biosynthesis/export protein
THII_1326	PF10531	SLBB domain
THII_1328	PF07690	Major Facilitator Superfamily
THII_1329	PF00436	Single-strand binding protein family
THII_1330	PF01725	Ham1 family
THII_1331	PF00929	Exonuclease
THII_1332	PF00293	NUDIX domain
THII_1333	PF00977	Histidine biosynthesis protein
THII_1334	PF00977	Histidine biosynthesis protein
THII_1335	PF04366	THII_1335
THII_1336	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
THII_1337	PF04366	THII_1337
THII_1338	PF11969	Scavenger mRNA decapping enzyme C-term binding
THII_1339	PF02416	mttA/Hcf106 family
THII_1340	PF02416	mttA/Hcf106 family
THII_1341	PF00902	Sec-independent protein translocase protein (TatC)
THII_1344	PF05685	Putative restriction endonuclease
THII_1345	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
THII_1346	PF00483	Nucleotidyl transferase
THII_1347	PF16363	THII_1347
THII_1348	PF01724	Domain of unknown function DUF29
THII_1350	PF11162	THII_1350
THII_1351	PF16576	THII_1351
THII_1352	PF00873	AcrB/AcrD/AcrF family
THII_1354	PF04572	THII_1354
THII_1356	PF13175	AAA ATPase domain
THII_1358	PF04255	Protein of unknown function (DUF433)
THII_1360	PF01710	Transposase
THII_1361	PF13358	DDE superfamily endonuclease
THII_1364	PF00563	EAL domain
THII_1364	PF00990	GGDEF domain
THII_1364	PF08447	PAS fold
THII_1364	PF08448	PAS fold
THII_1364	PF17159	THII_1364
THII_1365	PF00072	Response regulator receiver domain
THII_1365	PF00512	His Kinase A (phospho-acceptor) domain
THII_1365	PF00989	PAS fold
THII_1365	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1365	PF08447	PAS fold
THII_1365	PF08448	PAS fold
THII_1366	PF00072	Response regulator receiver domain
THII_1366	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1367	PF03435	Saccharopine dehydrogenase
THII_1368	PF00348	Polyprenyl synthetase
THII_1369	PF01738	Dienelactone hydrolase family
THII_1370	PF01551	Peptidase family M23
THII_1376	PF00199	Catalase
THII_1376	PF06628	Catalase-related immune-responsive
THII_1378	PF01252	THII_1378
THII_1379	PF00133	tRNA synthetases class I (I, L, M and V)
THII_1379	PF06827	Zinc finger found in FPG and IleRS
THII_1379	PF08264	Anticodon-binding domain of tRNA
THII_1380	PF01043	SecA preprotein cross-linking domain
THII_1380	PF02810	SEC-C motif
THII_1380	PF07516	SecA Wing and Scaffold domain
THII_1380	PF07517	SecA DEAD-like domain
THII_1381	PF01960	ArgJ family
THII_1382	PF02581	Thiamine monophosphate synthase/TENI
THII_1382	PF14815	NUDIX domain
THII_1383	PF07883	Cupin domain
THII_1384	PF00535	Glycosyl transferase family 2
THII_1388	PF00581	Rhodanese-like domain
THII_1390	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
THII_1392	PF00528	Binding-protein-dependent transport system inner membrane component
THII_1393	PF00528	Binding-protein-dependent transport system inner membrane component
THII_1393	PF12911	THII_1393
THII_1395	PF00072	Response regulator receiver domain
THII_1395	PF00512	His Kinase A (phospho-acceptor) domain
THII_1395	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1395	PF03924	CHASE domain
THII_1395	PF08447	PAS fold
THII_1395	PF08448	PAS fold
THII_1395	PF13188	PAS domain
THII_1395	PF13426	PAS domain
THII_1396	PF00072	Response regulator receiver domain
THII_1396	PF00512	His Kinase A (phospho-acceptor) domain
THII_1396	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1397	PF00334	Nucleoside diphosphate kinase
THII_1398	PF04055	Radical SAM superfamily
THII_1399	PF13432	Tetratricopeptide repeat
THII_1399	PF14559	Tetratricopeptide repeat
THII_1400	PF13413	Helix-turn-helix domain
THII_1400	PF13464	THII_1400
THII_1401	PF04551	GcpE protein
THII_1403	PF01738	Dienelactone hydrolase family
THII_1404	PF01967	MoaC family
THII_1405	PF09360	Iron-binding zinc finger CDGSH type
THII_1406	PF00270	DEAD/DEAH box helicase
THII_1406	PF00271	Helicase conserved C-terminal domain
THII_1407	PF03235	THII_1407
THII_1407	PF07510	THII_1407
THII_1408	PF05685	Putative restriction endonuclease
THII_1409	PF13380	CoA binding domain
THII_1411	PF01411	tRNA synthetases class II (A)
THII_1411	PF02272	DHHA1 domain
THII_1411	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
THII_1412	PF02631	RecX family
THII_1413	PF00154	recA bacterial DNA recombination protein
THII_1414	PF01364	Peptidase family C25
THII_1414	PF08126	Propeptide_C25
THII_1418	PF00122	E1-E2 ATPase
THII_1419	PF06097	THII_1419
THII_1420	PF00291	Pyridoxal-phosphate dependent enzyme
THII_1421	PF01764	Lipase (class 3)
THII_1422	PF13540	Regulator of chromosome condensation (RCC1) repeat
THII_1423	PF13540	Regulator of chromosome condensation (RCC1) repeat
THII_1424	PF01176	Translation initiation factor 1A / IF-1
THII_1425	PF01451	Low molecular weight phosphotyrosine protein phosphatase
THII_1426	PF03966	Trm112p-like protein
THII_1427	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
THII_1428	PF02472	Biopolymer transport protein ExbD/TolR
THII_1429	PF01618	THII_1429
THII_1430	PF00586	AIR synthase related protein, N-terminal domain
THII_1430	PF02769	AIR synthase related protein, C-terminal domain
THII_1431	PF00999	Sodium/hydrogen exchanger family
THII_1433	PF13511	THII_1433
THII_1434	PF03625	Domain of unknown function DUF302
THII_1435	PF10119	THII_1435
THII_1435	PF13847	Methyltransferase domain
THII_1438	PF00152	tRNA synthetases class II (D, K and N)
THII_1438	PF01336	OB-fold nucleic acid binding domain
THII_1438	PF02938	GAD domain
THII_1439	PF09723	THII_1439
THII_1441	PF00342	Phosphoglucose isomerase
THII_1442	PF02446	4-alpha-glucanotransferase
THII_1443	PF03065	Glycosyl hydrolase family 57
THII_1444	PF00483	Nucleotidyl transferase
THII_1445	PF00171	Aldehyde dehydrogenase family
THII_1447	PF09826	THII_1447
THII_1452	PF02624	YcaO-like family
THII_1453	PF04909	Amidohydrolase
THII_1454	PF00069	Protein kinase domain
THII_1454	PF00512	His Kinase A (phospho-acceptor) domain
THII_1454	PF01590	GAF domain
THII_1454	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1454	PF13191	AAA ATPase domain
THII_1455	PF00072	Response regulator receiver domain
THII_1455	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_1456	PF04342	THII_1456
THII_1457	PF00300	Histidine phosphatase superfamily (branch 1)
THII_1458	PF03372	Endonuclease/Exonuclease/phosphatase family
THII_1459	PF00675	Insulinase (Peptidase family M16)
THII_1459	PF05193	Peptidase M16 inactive domain
THII_1460	PF00675	Insulinase (Peptidase family M16)
THII_1460	PF05193	Peptidase M16 inactive domain
THII_1463	PF00924	Mechanosensitive ion channel
THII_1464	PF03625	Domain of unknown function DUF302
THII_1465	PF02779	Transketolase, pyrimidine binding domain
THII_1465	PF02780	Transketolase, C-terminal domain
THII_1465	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
THII_1466	PF02649	Type I GTP cyclohydrolase folE2
THII_1467	PF02578	Multi-copper polyphenol oxidoreductase laccase
THII_1469	PF01435	Peptidase family M48
THII_1470	PF05170	THII_1470
THII_1471	PF07963	Prokaryotic N-terminal methylation motif
THII_1471	PF11612	Type II secretion system (T2SS), protein J
THII_1472	PF00085	Thioredoxin
THII_1473	PF04055	Radical SAM superfamily
THII_1473	PF16881	THII_1473
THII_1474	PF03099	Biotin/lipoate A/B protein ligase family
THII_1475	PF03350	THII_1475
THII_1476	PF04055	Radical SAM superfamily
THII_1476	PF13186	Iron-sulfur cluster-binding domain
THII_1477	PF05685	Putative restriction endonuclease
THII_1480	PF03734	L,D-transpeptidase catalytic domain
THII_1481	PF00440	Bacterial regulatory proteins, tetR family
THII_1482	PF16576	THII_1482
THII_1483	PF00873	AcrB/AcrD/AcrF family
THII_1485	PF00270	DEAD/DEAH box helicase
THII_1486	PF13855	Leucine rich repeat
THII_1487	PF02597	ThiS family
THII_1488	PF13641	Glycosyltransferase like family 2
THII_1489	PF00166	Chaperonin 10 Kd subunit
THII_1490	PF00118	TCP-1/cpn60 chaperonin family
THII_1491	PF01040	UbiA prenyltransferase family
THII_1493	PF00462	Glutaredoxin
THII_1494	PF01053	Cys/Met metabolism PLP-dependent enzyme
THII_1495	PF02824	TGS domain
THII_1495	PF04607	Region found in RelA / SpoT proteins
THII_1495	PF13291	ACT domain
THII_1495	PF13328	HD domain
THII_1496	PF00931	NB-ARC domain
THII_1499	PF01936	NYN domain
THII_1499	PF12872	OST-HTH/LOTUS domain
THII_1500	PF00034	Cytochrome c
THII_1500	PF03150	Di-haem cytochrome c peroxidase
THII_1501	PF08263	Leucine rich repeat N-terminal domain
THII_1502	PF05860	haemagglutination activity domain
THII_1503	PF00005	ABC transporter
THII_1503	PF00664	ABC transporter transmembrane region
THII_1505	PF10282	Lactonase, 7-bladed beta-propeller
THII_1506	PF01650	Peptidase C13 family
THII_1506	PF03160	Calx-beta domain
THII_1506	PF05345	Putative Ig domain
THII_1506	PF10282	Lactonase, 7-bladed beta-propeller
THII_1507	PF08780	Nucleotidyltransferase substrate binding protein like
THII_1508	PF01909	Nucleotidyltransferase domain
THII_1509	PF04168	THII_1509
THII_1510	PF14403	THII_1510
THII_1512	PF01435	Peptidase family M48
THII_1513	PF13419	Haloacid dehalogenase-like hydrolase
THII_1514	PF00069	Protein kinase domain
THII_1514	PF00512	His Kinase A (phospho-acceptor) domain
THII_1514	PF01590	GAF domain
THII_1514	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1514	PF13191	AAA ATPase domain
THII_1516	PF05899	Protein of unknown function (DUF861)
THII_1517	PF00072	Response regulator receiver domain
THII_1517	PF00512	His Kinase A (phospho-acceptor) domain
THII_1517	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1518	PF01963	THII_1518
THII_1520	PF01797	Transposase IS200 like
THII_1521	PF00374	Nickel-dependent hydrogenase
THII_1522	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
THII_1523	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THII_1523	PF13459	4Fe-4S single cluster domain
THII_1523	PF13510	2Fe-2S iron-sulfur cluster binding domain
THII_1524	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
THII_1524	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
THII_1524	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
THII_1525	PF04052	TolB amino-terminal domain
THII_1525	PF07676	WD40-like Beta Propeller Repeat
THII_1526	PF13103	TonB C terminal
THII_1528	PF02472	Biopolymer transport protein ExbD/TolR
THII_1529	PF01618	THII_1529
THII_1530	PF03061	Thioesterase superfamily
THII_1531	PF05491	Holliday junction DNA helicase ruvB C-terminus
THII_1531	PF05496	Holliday junction DNA helicase ruvB N-terminus
THII_1532	PF00034	Cytochrome c
THII_1533	PF01323	DSBA-like thioredoxin domain
THII_1536	PF01042	Endoribonuclease L-PSP
THII_1537	PF00270	DEAD/DEAH box helicase
THII_1537	PF00271	Helicase conserved C-terminal domain
THII_1537	PF17191	THII_1537
THII_1538	PF03625	Domain of unknown function DUF302
THII_1539	PF02397	THII_1539
THII_1539	PF13727	CoA-binding domain
THII_1540	PF00072	Response regulator receiver domain
THII_1540	PF00512	His Kinase A (phospho-acceptor) domain
THII_1540	PF00989	PAS fold
THII_1540	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1540	PF08447	PAS fold
THII_1540	PF08448	PAS fold
THII_1540	PF13426	PAS domain
THII_1541	PF00072	Response regulator receiver domain
THII_1541	PF00990	GGDEF domain
THII_1542	PF00474	Sodium:solute symporter family
THII_1543	PF00849	RNA pseudouridylate synthase
THII_1543	PF01479	S4 domain
THII_1544	PF13525	Outer membrane lipoprotein
THII_1545	PF00574	Clp protease
THII_1546	PF01432	Peptidase family M3
THII_1547	PF00343	Carbohydrate phosphorylase
THII_1548	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
THII_1549	PF00146	NADH dehydrogenase
THII_1551	PF12784	THII_1551
THII_1552	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
THII_1554	PF00501	AMP-binding enzyme
THII_1554	PF13193	AMP-binding enzyme C-terminal domain
THII_1554	PF16177	THII_1554
THII_1555	PF03160	Calx-beta domain
THII_1559	PF05685	Putative restriction endonuclease
THII_1560	PF04982	THII_1560
THII_1561	PF00403	Heavy-metal-associated domain
THII_1562	PF02548	Ketopantoate hydroxymethyltransferase
THII_1563	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
THII_1564	PF01743	Poly A polymerase head domain
THII_1564	PF12626	Polymerase A arginine-rich C-terminus
THII_1564	PF12627	Probable RNA and SrmB- binding site of polymerase A
THII_1565	PF00830	Ribosomal L28 family
THII_1566	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_1567	PF02634	FdhD/NarQ family
THII_1568	PF04055	Radical SAM superfamily
THII_1568	PF06463	Molybdenum Cofactor Synthesis C
THII_1569	PF10119	THII_1569
THII_1569	PF13847	Methyltransferase domain
THII_1570	PF00072	Response regulator receiver domain
THII_1570	PF00486	Transcriptional regulatory protein, C terminal
THII_1571	PF00512	His Kinase A (phospho-acceptor) domain
THII_1571	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1571	PF02702	Osmosensitive K+ channel His kinase sensor domain
THII_1571	PF13492	GAF domain
THII_1571	PF13493	Domain of unknown function (DUF4118)
THII_1573	PF01650	Peptidase C13 family
THII_1573	PF07494	Two component regulator propeller
THII_1574	PF00400	WD domain, G-beta repeat
THII_1574	PF13676	TIR domain
THII_1575	PF01743	Poly A polymerase head domain
THII_1575	PF01966	HD domain
THII_1575	PF12627	Probable RNA and SrmB- binding site of polymerase A
THII_1576	PF01370	NAD dependent epimerase/dehydratase family
THII_1577	PF02872	5'-nucleotidase, C-terminal domain
THII_1578	PF08770	Sulphur oxidation protein SoxZ
THII_1579	PF13501	Sulfur oxidation protein SoxY
THII_1580	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_1581	PF02486	THII_1581
THII_1583	PF00072	Response regulator receiver domain
THII_1583	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_1584	PF00497	Bacterial extracellular solute-binding proteins, family 3
THII_1585	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1587	PF13665	THII_1587
THII_1587	PF15635	THII_1587
THII_1589	PF08263	Leucine rich repeat N-terminal domain
THII_1590	PF02661	Fic/DOC family
THII_1591	PF01724	Domain of unknown function DUF29
THII_1592	PF03109	THII_1592
THII_1593	PF02036	SCP-2 sterol transfer family
THII_1594	PF06271	THII_1594
THII_1595	PF01209	ubiE/COQ5 methyltransferase family
THII_1596	PF06155	Protein of unknown function (DUF971)
THII_1597	PF00004	ATPase family associated with various cellular activities (AAA)
THII_1597	PF07724	AAA domain (Cdc48 subfamily)
THII_1598	PF00227	Proteasome subunit
THII_1599	PF01636	Phosphotransferase enzyme family
THII_1600	PF03641	Possible lysine decarboxylase
THII_1601	PF11906	THII_1601
THII_1601	PF13719	THII_1601
THII_1602	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
THII_1603	PF00877	NlpC/P60 family
THII_1603	PF12912	NLPC_P60 stabilising domain, N term
THII_1603	PF12913	SH3 domain of the SH3b1 type
THII_1603	PF12914	SH3 domain of SH3b2 type
THII_1605	PF00005	ABC transporter
THII_1605	PF00664	ABC transporter transmembrane region
THII_1605	PF03412	Peptidase C39 family
THII_1609	PF08410	THII_1609
THII_1611	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_1613	PF04255	Protein of unknown function (DUF433)
THII_1615	PF00115	Cytochrome C and Quinol oxidase polypeptide I
THII_1616	PF02433	Cytochrome C oxidase, mono-heme subunit/FixO
THII_1617	PF05545	THII_1617
THII_1618	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_1618	PF14715	N-terminal domain of cytochrome oxidase-cbb3, FixP
THII_1619	PF02554	THII_1619
THII_1619	PF13722	THII_1619
THII_1620	PF04328	THII_1620
THII_1621	PF05866	Endodeoxyribonuclease RusA
THII_1623	PF10130	THII_1623
THII_1624	PF00072	Response regulator receiver domain
THII_1624	PF00486	Transcriptional regulatory protein, C terminal
THII_1625	PF00512	His Kinase A (phospho-acceptor) domain
THII_1625	PF00672	HAMP domain
THII_1625	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1626	PF14358	THII_1626
THII_1627	PF13202	EF hand
THII_1629	PF00691	OmpA family
THII_1630	PF00071	Ras family
THII_1631	PF00072	Response regulator receiver domain
THII_1631	PF00512	His Kinase A (phospho-acceptor) domain
THII_1631	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1632	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_1633	PF01808	AICARFT/IMPCHase bienzyme
THII_1633	PF02142	MGS-like domain
THII_1634	PF00459	Inositol monophosphatase family
THII_1635	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_1636	PF06769	Plasmid encoded toxin Txe
THII_1638	PF13540	Regulator of chromosome condensation (RCC1) repeat
THII_1639	PF13641	Glycosyltransferase like family 2
THII_1641	PF04230	THII_1641
THII_1642	PF00685	Sulfotransferase domain
THII_1643	PF13649	Methyltransferase domain
THII_1644	PF04230	THII_1644
THII_1645	PF04230	THII_1645
THII_1646	PF01565	FAD binding domain
THII_1648	PF13489	Methyltransferase domain
THII_1649	PF01370	NAD dependent epimerase/dehydratase family
THII_1651	PF13540	Regulator of chromosome condensation (RCC1) repeat
THII_1653	PF04230	THII_1653
THII_1654	PF04230	THII_1654
THII_1655	PF00881	Nitroreductase family
THII_1658	PF00535	Glycosyl transferase family 2
THII_1660	PF14238	THII_1660
THII_1661	PF09822	THII_1661
THII_1662	PF12679	THII_1662
THII_1663	PF00005	ABC transporter
THII_1664	PF00005	ABC transporter
THII_1664	PF00664	ABC transporter transmembrane region
THII_1666	PF01724	Domain of unknown function DUF29
THII_1672	PF01724	Domain of unknown function DUF29
THII_1673	PF00384	Molybdopterin oxidoreductase
THII_1674	PF13247	4Fe-4S dicluster domain
THII_1675	PF09459	Ethylbenzene dehydrogenase
THII_1676	PF02613	Nitrate reductase delta subunit
THII_1681	PF14261	THII_1681
THII_1682	PF12799	Leucine Rich repeats (2 copies)
THII_1685	PF01578	THII_1685
THII_1687	PF09851	THII_1687
THII_1688	PF00675	Insulinase (Peptidase family M16)
THII_1688	PF05193	Peptidase M16 inactive domain
THII_1688	PF08367	Peptidase M16C associated
THII_1689	PF00092	von Willebrand factor type A domain
THII_1691	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_1691	PF09242	Flavocytochrome c sulphide dehydrogenase, flavin-binding
THII_1693	PF12796	Ankyrin repeats (3 copies)
THII_1694	PF03264	NapC/NirT cytochrome c family, N-terminal region
THII_1695	PF00483	Nucleotidyl transferase
THII_1696	PF16363	THII_1696
THII_1697	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
THII_1698	PF01370	NAD dependent epimerase/dehydratase family
THII_1699	PF16363	THII_1699
THII_1701	PF00535	Glycosyl transferase family 2
THII_1702	PF00535	Glycosyl transferase family 2
THII_1703	PF01943	THII_1703
THII_1704	PF00685	Sulfotransferase domain
THII_1706	PF05050	Methyltransferase FkbM domain
THII_1707	PF00535	Glycosyl transferase family 2
THII_1708	PF00534	Glycosyl transferases group 1
THII_1709	PF00534	Glycosyl transferases group 1
THII_1709	PF13579	Glycosyl transferase 4-like domain
THII_1710	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_1711	PF13489	Methyltransferase domain
THII_1712	PF00535	Glycosyl transferase family 2
THII_1713	PF04055	Radical SAM superfamily
THII_1713	PF13186	Iron-sulfur cluster-binding domain
THII_1713	PF13353	4Fe-4S single cluster domain
THII_1714	PF00534	Glycosyl transferases group 1
THII_1714	PF13579	Glycosyl transferase 4-like domain
THII_1715	PF01975	Survival protein SurE
THII_1716	PF02754	THII_1716
THII_1716	PF13183	4Fe-4S dicluster domain
THII_1717	PF08240	Alcohol dehydrogenase GroES-like domain
THII_1717	PF13602	Zinc-binding dehydrogenase
THII_1718	PF13563	2'-5' RNA ligase superfamily
THII_1720	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_1721	PF00482	Type II secretion system (T2SS), protein F
THII_1723	PF12784	THII_1723
THII_1725	PF06051	THII_1725
THII_1727	PF13086	AAA domain
THII_1727	PF13087	AAA domain
THII_1727	PF13195	THII_1727
THII_1730	PF14213	THII_1730
THII_1733	PF12836	Helix-hairpin-helix motif
THII_1734	PF02684	THII_1734
THII_1735	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_1735	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
THII_1736	PF07977	FabA-like domain
THII_1737	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_1737	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
THII_1738	PF03938	Outer membrane protein (OmpH-like)
THII_1739	PF01103	Surface antigen
THII_1739	PF07244	Surface antigen variable number repeat
THII_1740	PF02163	Peptidase family M50
THII_1741	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
THII_1741	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
THII_1741	PF13288	DXP reductoisomerase C-terminal domain
THII_1742	PF01148	Cytidylyltransferase family
THII_1743	PF01255	Putative undecaprenyl diphosphate synthase
THII_1744	PF01765	Ribosome recycling factor
THII_1745	PF00696	Amino acid kinase family
THII_1746	PF00889	Elongation factor TS
THII_1747	PF00318	Ribosomal protein S2
THII_1748	PF00557	Metallopeptidase family M24
THII_1749	PF00899	ThiF family
THII_1750	PF02597	ThiS family
THII_1751	PF02391	MoaE protein
THII_1752	PF01436	NHL repeat
THII_1752	PF03160	Calx-beta domain
THII_1754	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
THII_1754	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
THII_1754	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
THII_1755	PF00899	ThiF family
THII_1756	PF03922	OmpW family
THII_1760	PF00497	Bacterial extracellular solute-binding proteins, family 3
THII_1761	PF00639	PPIC-type PPIASE domain
THII_1762	PF12978	Domain of Unknown Function with PDB structure (DUF3862)
THII_1763	PF14103	THII_1763
THII_1764	PF13304	AAA domain
THII_1765	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_1765	PF12804	MobA-like NTP transferase domain
THII_1768	PF10006	THII_1768
THII_1769	PF01814	Hemerythrin HHE cation binding domain
THII_1770	PF00027	Cyclic nucleotide-binding domain
THII_1770	PF13545	Crp-like helix-turn-helix domain
THII_1772	PF03023	THII_1772
THII_1773	PF01687	Riboflavin kinase
THII_1773	PF06574	FAD synthetase
THII_1774	PF00350	Dynamin family
THII_1775	PF08897	THII_1775
THII_1776	PF00990	GGDEF domain
THII_1776	PF02743	Cache domain
THII_1776	PF08448	PAS fold
THII_1777	PF00512	His Kinase A (phospho-acceptor) domain
THII_1777	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1777	PF07494	Two component regulator propeller
THII_1777	PF07495	Y_Y_Y domain
THII_1778	PF00384	Molybdopterin oxidoreductase
THII_1778	PF01568	Molydopterin dinucleotide binding domain
THII_1778	PF04324	BFD-like [2Fe-2S] binding domain
THII_1778	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
THII_1779	PF01400	Astacin (Peptidase family M12A)
THII_1781	PF13806	Rieske-like [2Fe-2S] domain
THII_1782	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
THII_1782	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
THII_1782	PF04324	BFD-like [2Fe-2S] binding domain
THII_1782	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_1783	PF07690	Major Facilitator Superfamily
THII_1784	PF13379	NMT1-like family
THII_1785	PF00072	Response regulator receiver domain
THII_1785	PF03861	ANTAR domain
THII_1786	PF07691	PA14 domain
THII_1787	PF05860	haemagglutination activity domain
THII_1788	PF05685	Putative restriction endonuclease
THII_1789	PF00005	ABC transporter
THII_1790	PF01032	FecCD transport family
THII_1791	PF14252	THII_1791
THII_1793	PF07295	THII_1793
THII_1794	PF00795	Carbon-nitrogen hydrolase
THII_1795	PF13682	Chemoreceptor zinc-binding domain
THII_1796	PF00571	CBS domain
THII_1796	PF03471	Transporter associated domain
THII_1797	PF02130	Uncharacterized protein family UPF0054
THII_1798	PF02562	PhoH-like protein
THII_1799	PF00919	Uncharacterized protein family UPF0004
THII_1799	PF01938	TRAM domain
THII_1799	PF04055	Radical SAM superfamily
THII_1800	PF12849	PBP superfamily domain
THII_1801	PF01171	PP-loop family
THII_1802	PF00581	Rhodanese-like domain
THII_1803	PF01724	Domain of unknown function DUF29
THII_1804	PF00271	Helicase conserved C-terminal domain
THII_1804	PF04851	Type III restriction enzyme, res subunit
THII_1805	PF05685	Putative restriction endonuclease
THII_1806	PF00142	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
THII_1807	PF00148	Nitrogenase component 1 type Oxidoreductase
THII_1808	PF00148	Nitrogenase component 1 type Oxidoreductase
THII_1808	PF11844	Domain of unknown function (DUF3364)
THII_1809	PF06988	NifT/FixU protein
THII_1810	PF00037	4Fe-4S binding domain
THII_1811	PF02579	Dinitrogenase iron-molybdenum cofactor
THII_1811	PF16844	THII_1811
THII_1813	PF00148	Nitrogenase component 1 type Oxidoreductase
THII_1814	PF00148	Nitrogenase component 1 type Oxidoreductase
THII_1815	PF02579	Dinitrogenase iron-molybdenum cofactor
THII_1816	PF04246	THII_1816
THII_1817	PF03270	Protein of unknown function, DUF269
THII_1818	PF12838	4Fe-4S dicluster domain
THII_1820	PF13499	EF-hand domain pair
THII_1821	PF05685	Putative restriction endonuclease
THII_1822	PF13676	TIR domain
THII_1823	PF00330	Aconitase family (aconitate hydratase)
THII_1825	PF01351	Ribonuclease HII
THII_1826	PF04333	THII_1826
THII_1828	PF05164	Cell division protein ZapA
THII_1829	PF00437	Type II/IV secretion system protein
THII_1831	PF01797	Transposase IS200 like
THII_1832	PF00155	Aminotransferase class I and II
THII_1833	PF00989	PAS fold
THII_1833	PF08447	PAS fold
THII_1833	PF08448	PAS fold
THII_1833	PF13188	PAS domain
THII_1833	PF13426	PAS domain
THII_1834	PF00204	DNA gyrase B
THII_1834	PF00986	DNA gyrase B subunit, carboxyl terminus
THII_1834	PF01751	Toprim domain
THII_1834	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1835	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_1836	PF06769	Plasmid encoded toxin Txe
THII_1837	PF02547	Queuosine biosynthesis protein
THII_1840	PF09419	THII_1840
THII_1846	PF00027	Cyclic nucleotide-binding domain
THII_1846	PF00999	Sodium/hydrogen exchanger family
THII_1847	PF00072	Response regulator receiver domain
THII_1847	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1848	PF04358	DsrC like protein
THII_1849	PF00072	Response regulator receiver domain
THII_1849	PF00512	His Kinase A (phospho-acceptor) domain
THII_1849	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1851	PF04390	Lipopolysaccharide-assembly
THII_1852	PF00133	tRNA synthetases class I (I, L, M and V)
THII_1852	PF08264	Anticodon-binding domain of tRNA
THII_1852	PF13603	Leucyl-tRNA synthetase, Domain 2
THII_1854	PF10672	S-adenosylmethionine-dependent methyltransferase
THII_1856	PF13638	PIN domain
THII_1862	PF00330	Aconitase family (aconitate hydratase)
THII_1862	PF06434	Aconitate hydratase 2 N-terminus
THII_1862	PF11791	Aconitate B N-terminal domain
THII_1865	PF00082	Subtilase family
THII_1866	PF01061	THII_1866
THII_1867	PF13432	Tetratricopeptide repeat
THII_1868	PF13598	THII_1868
THII_1870	PF03819	MazG nucleotide pyrophosphohydrolase domain
THII_1873	PF00456	Transketolase, thiamine diphosphate binding domain
THII_1874	PF02779	Transketolase, pyrimidine binding domain
THII_1874	PF02780	Transketolase, C-terminal domain
THII_1875	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain
THII_1876	PF00749	tRNA synthetases class I (E and Q), catalytic domain
THII_1878	PF01103	Surface antigen
THII_1878	PF07244	Surface antigen variable number repeat
THII_1878	PF17243	THII_1878
THII_1879	PF04352	ProQ/FINO family
THII_1880	PF02558	Ketopantoate reductase PanE/ApbA
THII_1880	PF08546	Ketopantoate reductase PanE/ApbA C terminal
THII_1881	PF01871	AMMECR1
THII_1882	PF01875	Memo-like protein
THII_1883	PF04055	Radical SAM superfamily
THII_1884	PF00072	Response regulator receiver domain
THII_1884	PF00512	His Kinase A (phospho-acceptor) domain
THII_1884	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1886	PF00149	Calcineurin-like phosphoesterase
THII_1887	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
THII_1888	PF12804	MobA-like NTP transferase domain
THII_1889	PF00266	Aminotransferase class-V
THII_1890	PF05685	Putative restriction endonuclease
THII_1891	PF13801	Heavy-metal resistance
THII_1893	PF04542	Sigma-70 region 2
THII_1893	PF08281	Sigma-70, region 4
THII_1894	PF13202	EF hand
THII_1894	PF13833	EF-hand domain pair
THII_1895	PF13905	Thioredoxin-like
THII_1896	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
THII_1897	PF00528	Binding-protein-dependent transport system inner membrane component
THII_1898	PF00005	ABC transporter
THII_1898	PF00571	CBS domain
THII_1899	PF08241	Methyltransferase domain
THII_1900	PF13649	Methyltransferase domain
THII_1901	PF13649	Methyltransferase domain
THII_1904	PF01170	Putative RNA methylase family UPF0020
THII_1904	PF02926	THUMP domain
THII_1904	PF10672	S-adenosylmethionine-dependent methyltransferase
THII_1905	PF01165	Ribosomal protein S21
THII_1906	PF09424	Yqey-like protein
THII_1907	PF01807	CHC2 zinc finger
THII_1907	PF08275	DNA primase catalytic core, N-terminal domain
THII_1907	PF08278	DNA primase DnaG DnaB-binding
THII_1907	PF10410	DnaB-helicase binding domain of primase
THII_1907	PF13662	Toprim domain
THII_1908	PF00140	Sigma-70 factor, region 1
THII_1908	PF03979	Sigma-70 factor, region 1
THII_1908	PF04539	Sigma-70 region 3
THII_1908	PF04542	Sigma-70 region 2
THII_1908	PF04545	Sigma-70, region 4
THII_1908	PF04546	Sigma-70, non-essential region
THII_1909	PF01113	Dihydrodipicolinate reductase, N-terminus
THII_1909	PF05173	Dihydrodipicolinate reductase, C-terminus
THII_1910	PF07883	Cupin domain
THII_1911	PF01894	Uncharacterised protein family UPF0047
THII_1912	PF00535	Glycosyl transferase family 2
THII_1913	PF00563	EAL domain
THII_1913	PF00990	GGDEF domain
THII_1913	PF13426	PAS domain
THII_1914	PF00850	Histone deacetylase domain
THII_1915	PF00875	DNA photolyase
THII_1915	PF03441	FAD binding domain of DNA photolyase
THII_1917	PF00005	ABC transporter
THII_1917	PF12848	ABC transporter
THII_1918	PF07690	Major Facilitator Superfamily
THII_1919	PF01813	ATP synthase subunit D
THII_1920	PF00156	Phosphoribosyl transferase domain
THII_1921	PF01578	THII_1921
THII_1922	PF13432	Tetratricopeptide repeat
THII_1923	PF00905	Penicillin binding protein transpeptidase domain
THII_1923	PF00912	Transglycosylase
THII_1923	PF14814	Bifunctional transglycosylase second domain
THII_1924	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_1925	PF01584	CheW-like domain
THII_1926	PF01739	CheR methyltransferase, SAM binding domain
THII_1927	PF01584	CheW-like domain
THII_1928	PF00072	Response regulator receiver domain
THII_1928	PF01584	CheW-like domain
THII_1928	PF01627	Hpt domain
THII_1928	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1928	PF02895	Signal transducing histidine kinase, homodimeric domain
THII_1929	PF00072	Response regulator receiver domain
THII_1929	PF01339	CheB methylesterase
THII_1930	PF00072	Response regulator receiver domain
THII_1930	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_1931	PF13472	GDSL-like Lipase/Acylhydrolase family
THII_1932	PF13578	Methyltransferase domain
THII_1935	PF00534	Glycosyl transferases group 1
THII_1935	PF13641	Glycosyltransferase like family 2
THII_1936	PF13472	GDSL-like Lipase/Acylhydrolase family
THII_1938	PF05860	haemagglutination activity domain
THII_1939	PF04255	Protein of unknown function (DUF433)
THII_1942	PF01850	PIN domain
THII_1943	PF01968	Hydantoinase/oxoprolinase
THII_1943	PF02538	THII_1943
THII_1943	PF05378	THII_1943
THII_1944	PF13394	4Fe-4S single cluster domain
THII_1945	PF01797	Transposase IS200 like
THII_1946	PF05016	Plasmid stabilisation system protein
THII_1948	PF09413	Domain of unknown function (DUF2007)
THII_1949	PF00072	Response regulator receiver domain
THII_1949	PF00512	His Kinase A (phospho-acceptor) domain
THII_1949	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1949	PF12729	THII_1949
THII_1949	PF13185	GAF domain
THII_1950	PF09084	NMT1/THI5 like
THII_1951	PF00072	Response regulator receiver domain
THII_1951	PF00512	His Kinase A (phospho-acceptor) domain
THII_1951	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1951	PF13185	GAF domain
THII_1954	PF00072	Response regulator receiver domain
THII_1954	PF00512	His Kinase A (phospho-acceptor) domain
THII_1954	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1954	PF13185	GAF domain
THII_1954	PF16591	THII_1954
THII_1956	PF00990	GGDEF domain
THII_1957	PF01580	FtsK/SpoIIIE family
THII_1957	PF13491	THII_1957
THII_1958	PF00149	Calcineurin-like phosphoesterase
THII_1959	PF08241	Methyltransferase domain
THII_1960	PF04379	Protein of unknown function (DUF525)
THII_1962	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
THII_1963	PF00639	PPIC-type PPIASE domain
THII_1963	PF09312	SurA N-terminal domain
THII_1964	PF01850	PIN domain
THII_1965	PF10047	THII_1965
THII_1966	PF14238	THII_1966
THII_1967	PF09822	THII_1967
THII_1968	PF12679	THII_1968
THII_1969	PF00005	ABC transporter
THII_1970	PF07728	AAA domain (dynein-related subfamily)
THII_1970	PF08406	THII_1970
THII_1972	PF00462	Glutaredoxin
THII_1973	PF00691	OmpA family
THII_1973	PF02412	Thrombospondin type 3 repeat
THII_1974	PF00691	OmpA family
THII_1974	PF02412	Thrombospondin type 3 repeat
THII_1976	PF07700	Heme NO binding
THII_1977	PF00117	Glutamine amidotransferase class-I
THII_1978	PF00437	Type II/IV secretion system protein
THII_1978	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
THII_1979	PF00482	Type II secretion system (T2SS), protein F
THII_1980	PF01478	Type IV leader peptidase family
THII_1980	PF06750	THII_1980
THII_1981	PF01121	Dephospho-CoA kinase
THII_1982	PF07072	Protein of unknown function (DUF1342)
THII_1983	PF00072	Response regulator receiver domain
THII_1984	PF00072	Response regulator receiver domain
THII_1985	PF13379	NMT1-like family
THII_1986	PF01584	CheW-like domain
THII_1987	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_1987	PF00672	HAMP domain
THII_1988	PF00072	Response regulator receiver domain
THII_1988	PF01584	CheW-like domain
THII_1988	PF01627	Hpt domain
THII_1988	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_1991	PF03747	ADP-ribosylglycohydrolase
THII_1995	PF01609	Transposase DDE domain
THII_1996	PF05658	Head domain of trimeric autotransporter adhesin
THII_1996	PF11962	Peptidase_G2, IMC autoproteolytic cleavage domain
THII_1998	PF09684	THII_1998
THII_1999	PF04865	THII_1999
THII_2000	PF01850	PIN domain
THII_2002	PF01381	Helix-turn-helix
THII_2003	PF05015	Plasmid maintenance system killer protein
THII_2011	PF09684	THII_2011
THII_2012	PF04865	THII_2012
THII_2013	PF04965	Gene 25-like lysozyme
THII_2016	PF05954	Phage late control gene D protein (GPD)
THII_2019	PF06769	Plasmid encoded toxin Txe
THII_2022	PF13699	THII_2022
THII_2023	PF00004	ATPase family associated with various cellular activities (AAA)
THII_2024	PF14065	THII_2024
THII_2027	PF06841	THII_2027
THII_2028	PF04984	Phage tail sheath protein
THII_2028	PF17482	THII_2028
THII_2029	PF04255	Protein of unknown function (DUF433)
THII_2030	PF01927	THII_2030
THII_2032	PF02452	PemK-like protein
THII_2035	PF08780	Nucleotidyltransferase substrate binding protein like
THII_2036	PF01909	Nucleotidyltransferase domain
THII_2038	PF10387	Protein of unknown function (DUF2442)
THII_2039	PF13711	THII_2039
THII_2040	PF03734	L,D-transpeptidase catalytic domain
THII_2042	PF01381	Helix-turn-helix
THII_2044	PF13148	THII_2044
THII_2044	PF13362	Toprim domain
THII_2046	PF00589	Phage integrase family
THII_2046	PF13356	Domain of unknown function (DUF4102)
THII_2048	PF00089	Trypsin
THII_2049	PF00270	DEAD/DEAH box helicase
THII_2049	PF00271	Helicase conserved C-terminal domain
THII_2049	PF09369	THII_2049
THII_2050	PF02559	CarD-like/TRCF domain
THII_2051	PF04445	Putative SAM-dependent methyltransferase
THII_2053	PF00990	GGDEF domain
THII_2053	PF08448	PAS fold
THII_2053	PF13185	GAF domain
THII_2054	PF00207	Alpha-2-macroglobulin family
THII_2054	PF01835	MG2 domain
THII_2054	PF07703	Alpha-2-macroglobulin family N-terminal region
THII_2055	PF00588	SpoU rRNA Methylase family
THII_2056	PF01464	Transglycosylase SLT domain
THII_2056	PF14718	Soluble lytic murein transglycosylase L domain
THII_2057	PF13514	AAA domain
THII_2061	PF00149	Calcineurin-like phosphoesterase
THII_2062	PF03259	Roadblock/LC7 domain
THII_2063	PF13682	Chemoreceptor zinc-binding domain
THII_2065	PF03029	Conserved hypothetical ATP binding protein
THII_2067	PF03279	THII_2067
THII_2069	PF00482	Type II secretion system (T2SS), protein F
THII_2074	PF07963	Prokaryotic N-terminal methylation motif
THII_2075	PF07963	Prokaryotic N-terminal methylation motif
THII_2076	PF07963	Prokaryotic N-terminal methylation motif
THII_2077	PF00534	Glycosyl transferases group 1
THII_2077	PF13579	Glycosyl transferase 4-like domain
THII_2078	PF02705	THII_2078
THII_2079	PF12146	Putative lysophospholipase
THII_2080	PF07719	Tetratricopeptide repeat
THII_2080	PF13414	TPR repeat
THII_2080	PF13432	Tetratricopeptide repeat
THII_2081	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
THII_2081	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
THII_2082	PF01571	Aminomethyltransferase folate-binding domain
THII_2082	PF08669	Glycine cleavage T-protein C-terminal barrel domain
THII_2083	PF01597	Glycine cleavage H-protein
THII_2084	PF02347	Glycine cleavage system P-protein
THII_2085	PF00072	Response regulator receiver domain
THII_2086	PF04892	THII_2086
THII_2086	PF10990	THII_2086
THII_2089	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_2090	PF00696	Amino acid kinase family
THII_2090	PF01472	PUA domain
THII_2092	PF03544	Gram-negative bacterial TonB protein C-terminal
THII_2093	PF01618	THII_2093
THII_2094	PF05685	Putative restriction endonuclease
THII_2098	PF00596	Class II Aldolase and Adducin N-terminal domain
THII_2098	PF13561	Enoyl-(Acyl carrier protein) reductase
THII_2099	PF01809	THII_2099
THII_2100	PF01471	Putative peptidoglycan binding domain
THII_2100	PF13401	AAA domain
THII_2101	PF13711	THII_2101
THII_2102	PF01546	Peptidase family M20/M25/M40
THII_2102	PF07687	Peptidase dimerisation domain
THII_2103	PF00639	PPIC-type PPIASE domain
THII_2104	PF01722	BolA-like protein
THII_2105	PF03795	YCII-related domain
THII_2106	PF13328	HD domain
THII_2107	PF04279	THII_2107
THII_2109	PF00005	ABC transporter
THII_2110	PF02405	THII_2110
THII_2112	PF02472	Biopolymer transport protein ExbD/TolR
THII_2113	PF00572	Ribosomal protein L13
THII_2114	PF00380	Ribosomal protein S9/S16
THII_2115	PF00128	Alpha amylase, catalytic domain
THII_2115	PF02806	Alpha amylase, C-terminal all-beta domain
THII_2115	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
THII_2116	PF05685	Putative restriction endonuclease
THII_2117	PF16868	THII_2117
THII_2118	PF00459	Inositol monophosphatase family
THII_2119	PF01812	5-formyltetrahydrofolate cyclo-ligase family
THII_2120	PF00400	WD domain, G-beta repeat
THII_2121	PF13005	THII_2121
THII_2123	PF00501	AMP-binding enzyme
THII_2123	PF01553	Acyltransferase
THII_2123	PF07690	Major Facilitator Superfamily
THII_2126	PF01650	Peptidase C13 family
THII_2126	PF03160	Calx-beta domain
THII_2126	PF05345	Putative Ig domain
THII_2126	PF10282	Lactonase, 7-bladed beta-propeller
THII_2127	PF05973	THII_2127
THII_2128	PF01381	Helix-turn-helix
THII_2131	PF05685	Putative restriction endonuclease
THII_2132	PF03702	Uncharacterised protein family (UPF0075)
THII_2134	PF05685	Putative restriction endonuclease
THII_2136	PF00999	Sodium/hydrogen exchanger family
THII_2136	PF02254	TrkA-N domain
THII_2137	PF03988	THII_2137
THII_2139	PF00171	Aldehyde dehydrogenase family
THII_2140	PF12770	THII_2140
THII_2140	PF13424	Tetratricopeptide repeat
THII_2141	PF03275	UDP-galactopyranose mutase
THII_2141	PF13450	NAD(P)-binding Rossmann-like domain
THII_2143	PF01850	PIN domain
THII_2144	PF01553	Acyltransferase
THII_2146	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_2147	PF01850	PIN domain
THII_2151	PF05685	Putative restriction endonuclease
THII_2152	PF00201	UDP-glucoronosyl and UDP-glucosyl transferase
THII_2152	PF03033	Glycosyltransferase family 28 N-terminal domain
THII_2153	PF01814	Hemerythrin HHE cation binding domain
THII_2154	PF00685	Sulfotransferase domain
THII_2155	PF09925	THII_2155
THII_2156	PF14351	THII_2156
THII_2157	PF14345	THII_2157
THII_2159	PF04932	THII_2159
THII_2161	PF04205	FMN-binding domain
THII_2162	PF03116	THII_2162
THII_2163	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
THII_2163	PF10531	SLBB domain
THII_2163	PF13237	4Fe-4S dicluster domain
THII_2163	PF13375	RnfC Barrel sandwich hybrid domain
THII_2164	PF04060	Putative Fe-S cluster
THII_2164	PF14697	4Fe-4S dicluster domain
THII_2165	PF02508	THII_2165
THII_2167	PF14346	Domain of unknown function (DUF4398)
THII_2168	PF00072	Response regulator receiver domain
THII_2168	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_2168	PF00512	His Kinase A (phospho-acceptor) domain
THII_2168	PF01627	Hpt domain
THII_2168	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2168	PF17152	THII_2168
THII_2169	PF00072	Response regulator receiver domain
THII_2169	PF00512	His Kinase A (phospho-acceptor) domain
THII_2169	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2169	PF12729	THII_2169
THII_2170	PF01648	4'-phosphopantetheinyl transferase superfamily
THII_2171	PF01964	ThiC family
THII_2171	PF13667	ThiC-associated domain
THII_2172	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
THII_2173	PF02321	Outer membrane efflux protein
THII_2174	PF00082	Subtilase family
THII_2174	PF04151	Bacterial pre-peptidase C-terminal domain
THII_2175	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_2175	PF13188	PAS domain
THII_2176	PF01584	CheW-like domain
THII_2177	PF01584	CheW-like domain
THII_2177	PF01627	Hpt domain
THII_2177	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2177	PF02895	Signal transducing histidine kinase, homodimeric domain
THII_2178	PF00072	Response regulator receiver domain
THII_2179	PF09115	DNA polymerase III, delta subunit, C terminal
THII_2179	PF13177	DNA polymerase III, delta subunit
THII_2180	PF07238	PilZ domain
THII_2181	PF01026	TatD related DNase
THII_2182	PF00294	pfkB family carbohydrate kinase
THII_2183	PF00079	Serpin (serine protease inhibitor)
THII_2184	PF03232	THII_2184
THII_2185	PF01479	S4 domain
THII_2186	PF12784	THII_2186
THII_2187	PF00027	Cyclic nucleotide-binding domain
THII_2187	PF00924	Mechanosensitive ion channel
THII_2188	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_2188	PF00672	HAMP domain
THII_2188	PF12729	THII_2188
THII_2189	PF01584	CheW-like domain
THII_2191	PF04365	Protein of unknown function (DUF497)
THII_2194	PF00550	Phosphopantetheine attachment site
THII_2196	PF13546	THII_2196
THII_2197	PF13358	DDE superfamily endonuclease
THII_2198	PF01710	Transposase
THII_2199	PF03400	THII_2199
THII_2200	PF12710	haloacid dehalogenase-like hydrolase
THII_2201	PF00109	Beta-ketoacyl synthase, N-terminal domain
THII_2201	PF00378	Enoyl-CoA hydratase/isomerase family
THII_2201	PF00550	Phosphopantetheine attachment site
THII_2201	PF00668	Condensation domain
THII_2201	PF02801	Beta-ketoacyl synthase, C-terminal domain
THII_2201	PF05050	Methyltransferase FkbM domain
THII_2201	PF14765	Polyketide synthase dehydratase
THII_2201	PF16197	THII_2201
THII_2202	PF00109	Beta-ketoacyl synthase, N-terminal domain
THII_2202	PF00501	AMP-binding enzyme
THII_2202	PF00550	Phosphopantetheine attachment site
THII_2202	PF00698	Acyl transferase domain
THII_2202	PF02801	Beta-ketoacyl synthase, C-terminal domain
THII_2202	PF08659	KR domain
THII_2202	PF13193	AMP-binding enzyme C-terminal domain
THII_2202	PF14765	Polyketide synthase dehydratase
THII_2202	PF16197	THII_2202
THII_2203	PF13649	Methyltransferase domain
THII_2204	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
THII_2204	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
THII_2205	PF00550	Phosphopantetheine attachment site
THII_2206	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
THII_2206	PF02770	Acyl-CoA dehydrogenase, middle domain
THII_2206	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
THII_2208	PF00109	Beta-ketoacyl synthase, N-terminal domain
THII_2208	PF00550	Phosphopantetheine attachment site
THII_2208	PF02801	Beta-ketoacyl synthase, C-terminal domain
THII_2208	PF08659	KR domain
THII_2208	PF13649	Methyltransferase domain
THII_2208	PF16197	THII_2208
THII_2209	PF00107	Zinc-binding dehydrogenase
THII_2209	PF00109	Beta-ketoacyl synthase, N-terminal domain
THII_2209	PF00550	Phosphopantetheine attachment site
THII_2209	PF00975	Thioesterase domain
THII_2209	PF02801	Beta-ketoacyl synthase, C-terminal domain
THII_2209	PF08240	Alcohol dehydrogenase GroES-like domain
THII_2209	PF08242	Methyltransferase domain
THII_2209	PF08659	KR domain
THII_2209	PF13602	Zinc-binding dehydrogenase
THII_2209	PF14765	Polyketide synthase dehydratase
THII_2209	PF16197	THII_2209
THII_2211	PF13808	THII_2211
THII_2212	PF01609	Transposase DDE domain
THII_2213	PF03400	THII_2213
THII_2215	PF00698	Acyl transferase domain
THII_2216	PF13358	DDE superfamily endonuclease
THII_2217	PF00109	Beta-ketoacyl synthase, N-terminal domain
THII_2217	PF02801	Beta-ketoacyl synthase, C-terminal domain
THII_2218	PF13808	THII_2218
THII_2219	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
THII_2219	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
THII_2220	PF00378	Enoyl-CoA hydratase/isomerase family
THII_2221	PF13340	THII_2221
THII_2224	PF13358	DDE superfamily endonuclease
THII_2228	PF00589	Phage integrase family
THII_2229	PF00589	Phage integrase family
THII_2233	PF01710	Transposase
THII_2238	PF00391	PEP-utilising enzyme, mobile domain
THII_2238	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
THII_2239	PF01797	Transposase IS200 like
THII_2240	PF13411	MerR HTH family regulatory protein
THII_2241	PF13612	THII_2241
THII_2242	PF13358	DDE superfamily endonuclease
THII_2243	PF01710	Transposase
THII_2244	PF00122	E1-E2 ATPase
THII_2244	PF00702	haloacid dehalogenase-like hydrolase
THII_2245	PF13358	DDE superfamily endonuclease
THII_2246	PF13362	Toprim domain
THII_2249	PF13358	DDE superfamily endonuclease
THII_2256	PF00239	Resolvase, N terminal domain
THII_2257	PF07508	Recombinase
THII_2257	PF13408	Recombinase zinc beta ribbon domain
THII_2258	PF01926	50S ribosome-binding GTPase
THII_2258	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
THII_2259	PF05016	Plasmid stabilisation system protein
THII_2261	PF00263	THII_2261
THII_2261	PF03958	Bacterial type II/III secretion system short domain
THII_2262	PF00482	Type II secretion system (T2SS), protein F
THII_2263	PF00437	Type II/IV secretion system protein
THII_2265	PF00133	tRNA synthetases class I (I, L, M and V)
THII_2265	PF08264	Anticodon-binding domain of tRNA
THII_2265	PF10458	Valyl tRNA synthetase tRNA binding arm
THII_2269	PF01850	PIN domain
THII_2271	PF01850	PIN domain
THII_2272	PF14072	THII_2272
THII_2273	PF03168	Late embryogenesis abundant protein
THII_2274	PF00733	Asparagine synthase
THII_2275	PF05161	MOFRL family
THII_2275	PF13660	Domain of unknown function (DUF4147)
THII_2276	PF04754	THII_2276
THII_2277	PF12831	FAD dependent oxidoreductase
THII_2278	PF02662	THII_2278
THII_2278	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_2278	PF13187	4Fe-4S dicluster domain
THII_2279	PF13534	4Fe-4S dicluster domain
THII_2280	PF02754	THII_2280
THII_2282	PF01381	Helix-turn-helix
THII_2283	PF04365	Protein of unknown function (DUF497)
THII_2285	PF00011	Hsp20/alpha crystallin family
THII_2286	PF00226	DnaJ domain
THII_2286	PF01556	DnaJ C terminal domain
THII_2288	PF00149	Calcineurin-like phosphoesterase
THII_2289	PF03710	Glutamate-ammonia ligase adenylyltransferase
THII_2289	PF08335	GlnD PII-uridylyltransferase
THII_2290	PF08239	Bacterial SH3 domain
THII_2291	PF01063	Aminotransferase class IV
THII_2292	PF00425	chorismate binding enzyme
THII_2293	PF11251	THII_2293
THII_2294	PF00072	Response regulator receiver domain
THII_2294	PF00512	His Kinase A (phospho-acceptor) domain
THII_2294	PF00989	PAS fold
THII_2294	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2295	PF01339	CheB methylesterase
THII_2296	PF01739	CheR methyltransferase, SAM binding domain
THII_2296	PF03705	CheR methyltransferase, all-alpha domain
THII_2297	PF13176	Tetratricopeptide repeat
THII_2297	PF13181	Tetratricopeptide repeat
THII_2297	PF13374	Tetratricopeptide repeat
THII_2297	PF13424	Tetratricopeptide repeat
THII_2298	PF13231	THII_2298
THII_2300	PF00534	Glycosyl transferases group 1
THII_2300	PF13439	Glycosyltransferase Family 4
THII_2301	PF00535	Glycosyl transferase family 2
THII_2302	PF05685	Putative restriction endonuclease
THII_2303	PF00733	Asparagine synthase
THII_2303	PF13537	Glutamine amidotransferase domain
THII_2305	PF01926	50S ribosome-binding GTPase
THII_2305	PF06071	Protein of unknown function (DUF933)
THII_2306	PF01195	Peptidyl-tRNA hydrolase
THII_2307	PF01386	Ribosomal L25p family
THII_2307	PF14693	Ribosomal protein TL5, C-terminal domain
THII_2308	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
THII_2308	PF14572	Phosphoribosyl synthetase-associated domain
THII_2309	PF00288	GHMP kinases N terminal domain
THII_2309	PF08544	GHMP kinases C terminal
THII_2310	PF03550	Outer membrane lipoprotein LolB
THII_2311	PF13414	TPR repeat
THII_2311	PF13432	Tetratricopeptide repeat
THII_2311	PF14559	Tetratricopeptide repeat
THII_2312	PF00578	AhpC/TSA family
THII_2313	PF02562	PhoH-like protein
THII_2313	PF13638	PIN domain
THII_2314	PF00478	IMP dehydrogenase / GMP reductase domain
THII_2314	PF00571	CBS domain
THII_2315	PF00092	von Willebrand factor type A domain
THII_2316	PF02310	B12 binding domain
THII_2316	PF04055	Radical SAM superfamily
THII_2317	PF05685	Putative restriction endonuclease
THII_2318	PF05685	Putative restriction endonuclease
THII_2319	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_2320	PF00174	Oxidoreductase molybdopterin binding domain
THII_2320	PF03404	Mo-co oxidoreductase dimerisation domain
THII_2323	PF01555	DNA methylase
THII_2325	PF00072	Response regulator receiver domain
THII_2325	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_2325	PF00512	His Kinase A (phospho-acceptor) domain
THII_2325	PF00672	HAMP domain
THII_2325	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2325	PF02743	Cache domain
THII_2326	PF01066	CDP-alcohol phosphatidyltransferase
THII_2327	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
THII_2327	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
THII_2330	PF13175	AAA ATPase domain
THII_2331	PF10369	Small subunit of acetolactate synthase
THII_2331	PF13710	ACT domain
THII_2332	PF00205	Thiamine pyrophosphate enzyme, central domain
THII_2332	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
THII_2332	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
THII_2333	PF11614	IG-like fold at C-terminal of FixG, putative oxidoreductase
THII_2333	PF12801	THII_2333
THII_2333	PF13746	4Fe-4S dicluster domain
THII_2334	PF05751	THII_2334
THII_2335	PF13665	THII_2335
THII_2335	PF15635	THII_2335
THII_2338	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
THII_2339	PF00581	Rhodanese-like domain
THII_2340	PF00301	Rubredoxin
THII_2341	PF08543	Phosphomethylpyrimidine kinase
THII_2342	PF02581	Thiamine monophosphate synthase/TENI
THII_2343	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
THII_2345	PF00072	Response regulator receiver domain
THII_2345	PF00158	Sigma-54 interaction domain
THII_2345	PF02954	Bacterial regulatory protein, Fis family
THII_2348	PF00571	CBS domain
THII_2349	PF01894	Uncharacterised protein family UPF0047
THII_2350	PF07007	Protein of unknown function (DUF1311)
THII_2351	PF13975	THII_2351
THII_2352	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
THII_2352	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
THII_2353	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_2353	PF05226	THII_2353
THII_2354	PF06051	THII_2354
THII_2355	PF01545	Cation efflux family
THII_2355	PF16916	THII_2355
THII_2356	PF02321	Outer membrane efflux protein
THII_2357	PF04773	FecR protein
THII_2358	PF00578	AhpC/TSA family
THII_2359	PF01926	50S ribosome-binding GTPase
THII_2360	PF00004	ATPase family associated with various cellular activities (AAA)
THII_2360	PF02861	Clp amino terminal domain
THII_2360	PF07724	AAA domain (Cdc48 subfamily)
THII_2360	PF10431	C-terminal, D2-small domain, of ClpB protein
THII_2361	PF02617	ATP-dependent Clp protease adaptor protein ClpS
THII_2362	PF06271	THII_2362
THII_2365	PF04542	Sigma-70 region 2
THII_2365	PF04545	Sigma-70, region 4
THII_2366	PF01636	Phosphotransferase enzyme family
THII_2367	PF00483	Nucleotidyl transferase
THII_2368	PF00453	Ribosomal protein L20
THII_2369	PF01632	Ribosomal protein L35
THII_2370	PF00707	Translation initiation factor IF-3, C-terminal domain
THII_2370	PF05198	Translation initiation factor IF-3, N-terminal domain
THII_2371	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
THII_2371	PF02824	TGS domain
THII_2371	PF03129	Anticodon binding domain
THII_2371	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
THII_2373	PF00226	DnaJ domain
THII_2373	PF03703	THII_2373
THII_2374	PF00881	Nitroreductase family
THII_2375	PF00069	Protein kinase domain
THII_2375	PF00512	His Kinase A (phospho-acceptor) domain
THII_2375	PF01590	GAF domain
THII_2375	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2375	PF13191	AAA ATPase domain
THII_2378	PF00027	Cyclic nucleotide-binding domain
THII_2380	PF03703	THII_2380
THII_2381	PF00850	Histone deacetylase domain
THII_2382	PF05685	Putative restriction endonuclease
THII_2385	PF01850	PIN domain
THII_2386	PF10047	THII_2386
THII_2387	PF05860	haemagglutination activity domain
THII_2388	PF12770	THII_2388
THII_2389	PF01715	IPP transferase
THII_2390	PF17209	THII_2390
THII_2391	PF01926	50S ribosome-binding GTPase
THII_2391	PF13167	THII_2391
THII_2391	PF16360	THII_2391
THII_2392	PF01145	SPFH domain / Band 7 family
THII_2392	PF12221	THII_2392
THII_2393	PF01145	SPFH domain / Band 7 family
THII_2394	PF09838	THII_2394
THII_2395	PF13393	Histidyl-tRNA synthetase
THII_2396	PF00709	Adenylosuccinate synthetase
THII_2397	PF02678	Pirin
THII_2398	PF13540	Regulator of chromosome condensation (RCC1) repeat
THII_2399	PF13540	Regulator of chromosome condensation (RCC1) repeat
THII_2401	PF13518	Helix-turn-helix domain
THII_2402	PF03400	THII_2402
THII_2403	PF00082	Subtilase family
THII_2404	PF06097	THII_2404
THII_2405	PF04203	Sortase family
THII_2406	PF00072	Response regulator receiver domain
THII_2406	PF00486	Transcriptional regulatory protein, C terminal
THII_2407	PF00512	His Kinase A (phospho-acceptor) domain
THII_2407	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2407	PF06452	Domain of unknown function (DUF1083)
THII_2412	PF01724	Domain of unknown function DUF29
THII_2413	PF02508	THII_2413
THII_2414	PF13489	Methyltransferase domain
THII_2415	PF00633	Helix-hairpin-helix motif
THII_2415	PF00730	HhH-GPD superfamily base excision DNA repair protein
THII_2415	PF10576	Iron-sulfur binding domain of endonuclease III
THII_2416	PF02527	rRNA small subunit methyltransferase G
THII_2420	PF06769	Plasmid encoded toxin Txe
THII_2422	PF14346	Domain of unknown function (DUF4398)
THII_2423	PF00691	OmpA family
THII_2424	PF07728	AAA domain (dynein-related subfamily)
THII_2424	PF08406	THII_2424
THII_2425	PF00920	Dehydratase family
THII_2426	PF00672	HAMP domain
THII_2426	PF02743	Cache domain
THII_2428	PF02481	DNA recombination-mediator protein A
THII_2429	PF04361	THII_2429
THII_2430	PF01131	DNA topoisomerase
THII_2430	PF01396	THII_2430
THII_2430	PF01751	Toprim domain
THII_2431	PF01300	Telomere recombination
THII_2432	PF00543	Nitrogen regulatory protein P-II
THII_2433	PF00909	Ammonium Transporter Family
THII_2435	PF00691	OmpA family
THII_2435	PF08487	THII_2435
THII_2435	PF13768	von Willebrand factor type A domain
THII_2436	PF05685	Putative restriction endonuclease
THII_2438	PF00691	OmpA family
THII_2439	PF00226	DnaJ domain
THII_2440	PF00072	Response regulator receiver domain
THII_2440	PF00512	His Kinase A (phospho-acceptor) domain
THII_2440	PF00989	PAS fold
THII_2440	PF01627	Hpt domain
THII_2440	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2440	PF13426	PAS domain
THII_2442	PF00072	Response regulator receiver domain
THII_2442	PF01339	CheB methylesterase
THII_2443	PF03975	CheD chemotactic sensory transduction
THII_2444	PF01739	CheR methyltransferase, SAM binding domain
THII_2444	PF03705	CheR methyltransferase, all-alpha domain
THII_2445	PF13466	STAS domain
THII_2446	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_2446	PF12729	THII_2446
THII_2447	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_2447	PF00672	HAMP domain
THII_2447	PF08376	Nitrate and nitrite sensing
THII_2448	PF13578	Methyltransferase domain
THII_2449	PF02589	Uncharacterised ACR, YkgG family COG1556
THII_2450	PF02589	Uncharacterised ACR, YkgG family COG1556
THII_2450	PF11870	THII_2450
THII_2450	PF13183	4Fe-4S dicluster domain
THII_2451	PF00188	Cysteine-rich secretory protein family
THII_2453	PF05685	Putative restriction endonuclease
THII_2455	PF01724	Domain of unknown function DUF29
THII_2457	PF07963	Prokaryotic N-terminal methylation motif
THII_2458	PF00114	Pilin (bacterial filament)
THII_2458	PF07963	Prokaryotic N-terminal methylation motif
THII_2459	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
THII_2459	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
THII_2461	PF02754	THII_2461
THII_2461	PF13183	4Fe-4S dicluster domain
THII_2462	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
THII_2462	PF10518	TAT (twin-arginine translocation) pathway signal sequence
THII_2462	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
THII_2463	PF02333	Phytase
THII_2464	PF02405	THII_2464
THII_2464	PF13466	STAS domain
THII_2465	PF01476	LysM domain
THII_2467	PF07728	AAA domain (dynein-related subfamily)
THII_2468	PF08447	PAS fold
THII_2471	PF04012	THII_2471
THII_2472	PF09938	THII_2472
THII_2473	PF01992	ATP synthase (C/AC39) subunit
THII_2475	PF02397	THII_2475
THII_2476	PF02397	THII_2476
THII_2478	PF03741	THII_2478
THII_2479	PF08239	Bacterial SH3 domain
THII_2480	PF00291	Pyridoxal-phosphate dependent enzyme
THII_2481	PF02501	Type II secretion system (T2SS), protein I
THII_2481	PF07963	Prokaryotic N-terminal methylation motif
THII_2483	PF05016	Plasmid stabilisation system protein
THII_2484	PF15647	THII_2484
THII_2485	PF03400	THII_2485
THII_2486	PF03811	THII_2486
THII_2488	PF00106	short chain dehydrogenase
THII_2489	PF00890	FAD binding domain
THII_2489	PF02910	Fumarate reductase flavoprotein C-term
THII_2490	PF04246	THII_2490
THII_2491	PF00595	PDZ domain (Also known as DHR or GLGF)
THII_2491	PF13180	PDZ domain
THII_2491	PF13365	Trypsin-like peptidase domain
THII_2492	PF05768	Glutaredoxin-like domain (DUF836)
THII_2493	PF00009	Elongation factor Tu GTP binding domain
THII_2493	PF00679	Elongation factor G C-terminus
THII_2493	PF03144	Elongation factor Tu domain 2
THII_2493	PF06421	GTP-binding protein LepA C-terminus
THII_2494	PF00717	Peptidase S24-like
THII_2495	PF16137	THII_2495
THII_2496	PF00035	Double-stranded RNA binding motif
THII_2496	PF14622	Ribonuclease-III-like
THII_2497	PF01926	50S ribosome-binding GTPase
THII_2497	PF07650	KH domain
THII_2498	PF02412	Thrombospondin type 3 repeat
THII_2498	PF13385	Concanavalin A-like lectin/glucanases superfamily
THII_2503	PF00561	alpha/beta hydrolase fold
THII_2503	PF12697	Alpha/beta hydrolase family
THII_2504	PF12770	THII_2504
THII_2507	PF01370	NAD dependent epimerase/dehydratase family
THII_2508	PF02754	THII_2508
THII_2509	PF03747	ADP-ribosylglycohydrolase
THII_2510	PF01145	SPFH domain / Band 7 family
THII_2511	PF12883	Protein of unknown function (DUF3828)
THII_2513	PF01850	PIN domain
THII_2514	PF13304	AAA domain
THII_2515	PF00092	von Willebrand factor type A domain
THII_2517	PF01891	Cobalt uptake substrate-specific transmembrane region
THII_2517	PF13190	THII_2517
THII_2519	PF06146	THII_2519
THII_2520	PF00437	Type II/IV secretion system protein
THII_2521	PF08881	CVNH domain
THII_2522	PF03658	RnfH family Ubiquitin
THII_2523	PF02508	THII_2523
THII_2524	PF13469	Sulfotransferase family
THII_2525	PF08263	Leucine rich repeat N-terminal domain
THII_2525	PF13855	Leucine rich repeat
THII_2526	PF10047	THII_2526
THII_2527	PF03006	THII_2527
THII_2528	PF00072	Response regulator receiver domain
THII_2528	PF00512	His Kinase A (phospho-acceptor) domain
THII_2528	PF00989	PAS fold
THII_2528	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2528	PF08447	PAS fold
THII_2528	PF08448	PAS fold
THII_2528	PF13185	GAF domain
THII_2529	PF07726	ATPase family associated with various cellular activities (AAA)
THII_2530	PF05425	THII_2530
THII_2531	PF02875	Mur ligase family, glutamate ligase domain
THII_2531	PF08245	Mur ligase middle domain
THII_2532	PF03033	Glycosyltransferase family 28 N-terminal domain
THII_2532	PF04101	Glycosyltransferase family 28 C-terminal domain
THII_2533	PF01225	Mur ligase family, catalytic domain
THII_2533	PF02875	Mur ligase family, glutamate ligase domain
THII_2533	PF08245	Mur ligase middle domain
THII_2534	PF01565	FAD binding domain
THII_2534	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
THII_2535	PF01820	D-ala D-ala ligase N-terminus
THII_2535	PF07478	D-ala D-ala ligase C-terminus
THII_2536	PF03799	Cell division protein FtsQ
THII_2536	PF08478	POTRA domain, FtsQ-type
THII_2537	PF02491	SHS2 domain inserted in FTSA
THII_2537	PF14450	Cell division protein FtsA
THII_2538	PF00091	Tubulin/FtsZ family, GTPase domain
THII_2538	PF12327	FtsZ family, C-terminal domain
THII_2539	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
THII_2540	PF05258	THII_2540
THII_2541	PF01551	Peptidase family M23
THII_2542	PF01850	PIN domain
THII_2544	PF00801	PKD domain
THII_2544	PF00963	Cohesin domain
THII_2544	PF01436	NHL repeat
THII_2545	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_2546	PF00691	OmpA family
THII_2546	PF13441	THII_2546
THII_2547	PF00188	Cysteine-rich secretory protein family
THII_2548	PF06629	THII_2548
THII_2551	PF02592	THII_2551
THII_2552	PF02673	THII_2552
THII_2553	PF04892	THII_2553
THII_2554	PF07969	Amidohydrolase family
THII_2555	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2556	PF00158	Sigma-54 interaction domain
THII_2556	PF02954	Bacterial regulatory protein, Fis family
THII_2556	PF13185	GAF domain
THII_2557	PF03235	THII_2557
THII_2560	PF01381	Helix-turn-helix
THII_2564	PF03658	RnfH family Ubiquitin
THII_2565	PF02508	THII_2565
THII_2566	PF04205	FMN-binding domain
THII_2567	PF03116	THII_2567
THII_2568	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
THII_2568	PF10531	SLBB domain
THII_2568	PF13237	4Fe-4S dicluster domain
THII_2568	PF13375	RnfC Barrel sandwich hybrid domain
THII_2569	PF04060	Putative Fe-S cluster
THII_2569	PF14697	4Fe-4S dicluster domain
THII_2570	PF02508	THII_2570
THII_2571	PF00989	PAS fold
THII_2571	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2572	PF00158	Sigma-54 interaction domain
THII_2572	PF02954	Bacterial regulatory protein, Fis family
THII_2572	PF13185	GAF domain
THII_2573	PF08881	CVNH domain
THII_2574	PF01850	PIN domain
THII_2578	PF01029	NusB family
THII_2578	PF01189	NOL1/NOP2/sun family
THII_2579	PF14334	THII_2579
THII_2580	PF00512	His Kinase A (phospho-acceptor) domain
THII_2580	PF00672	HAMP domain
THII_2580	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2581	PF00072	Response regulator receiver domain
THII_2581	PF00158	Sigma-54 interaction domain
THII_2581	PF02954	Bacterial regulatory protein, Fis family
THII_2582	PF00072	Response regulator receiver domain
THII_2582	PF00512	His Kinase A (phospho-acceptor) domain
THII_2582	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2583	PF01520	N-acetylmuramoyl-L-alanine amidase
THII_2584	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
THII_2584	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
THII_2587	PF05015	Plasmid maintenance system killer protein
THII_2589	PF00521	DNA gyrase/topoisomerase IV, subunit A
THII_2589	PF03989	DNA gyrase C-terminal domain, beta-propeller
THII_2590	PF01724	Domain of unknown function DUF29
THII_2591	PF13274	THII_2591
THII_2592	PF01453	D-mannose binding lectin
THII_2593	PF01381	Helix-turn-helix
THII_2594	PF02347	Glycine cleavage system P-protein
THII_2595	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
THII_2596	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
THII_2596	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
THII_2597	PF02556	Preprotein translocase subunit SecB
THII_2598	PF00581	Rhodanese-like domain
THII_2599	PF11127	Protein of unknown function (DUF2892)
THII_2600	PF01022	Bacterial regulatory protein, arsR family
THII_2602	PF13531	Bacterial extracellular solute-binding protein
THII_2603	PF00528	Binding-protein-dependent transport system inner membrane component
THII_2604	PF00528	Binding-protein-dependent transport system inner membrane component
THII_2605	PF00005	ABC transporter
THII_2605	PF12857	THII_2605
THII_2606	PF04754	THII_2606
THII_2607	PF15891	THII_2607
THII_2609	PF01119	DNA mismatch repair protein, C-terminal domain
THII_2609	PF08676	MutL C terminal dimerisation domain
THII_2609	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2610	PF00497	Bacterial extracellular solute-binding proteins, family 3
THII_2610	PF01464	Transglycosylase SLT domain
THII_2611	PF00406	Adenylate kinase
THII_2611	PF05191	Adenylate kinase, active site lid
THII_2613	PF05954	Phage late control gene D protein (GPD)
THII_2617	PF01710	Transposase
THII_2618	PF13358	DDE superfamily endonuclease
THII_2619	PF13358	DDE superfamily endonuclease
THII_2620	PF01710	Transposase
THII_2621	PF05954	Phage late control gene D protein (GPD)
THII_2622	PF00391	PEP-utilising enzyme, mobile domain
THII_2622	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
THII_2622	PF02896	PEP-utilising enzyme, TIM barrel domain
THII_2624	PF05860	haemagglutination activity domain
THII_2627	PF01724	Domain of unknown function DUF29
THII_2628	PF04384	Iron-sulphur cluster assembly
THII_2629	PF00111	2Fe-2S iron-sulfur cluster binding domain
THII_2630	PF00012	Hsp70 protein
THII_2631	PF07743	HSCB C-terminal oligomerisation domain
THII_2632	PF01521	Iron-sulphur cluster biosynthesis
THII_2634	PF13175	AAA ATPase domain
THII_2635	PF01592	NifU-like N terminal domain
THII_2636	PF00266	Aminotransferase class-V
THII_2637	PF02082	Transcriptional regulator
THII_2638	PF00535	Glycosyl transferase family 2
THII_2639	PF13641	Glycosyltransferase like family 2
THII_2640	PF00534	Glycosyl transferases group 1
THII_2641	PF00534	Glycosyl transferases group 1
THII_2645	PF01724	Domain of unknown function DUF29
THII_2646	PF00501	AMP-binding enzyme
THII_2647	PF01476	LysM domain
THII_2648	PF01476	LysM domain
THII_2650	PF00149	Calcineurin-like phosphoesterase
THII_2650	PF02872	5'-nucleotidase, C-terminal domain
THII_2651	PF01545	Cation efflux family
THII_2652	PF09335	THII_2652
THII_2657	PF09361	THII_2657
THII_2658	PF12836	Helix-hairpin-helix motif
THII_2659	PF00801	PKD domain
THII_2659	PF13229	Right handed beta helix region
THII_2662	PF01850	PIN domain
THII_2663	PF00488	MutS domain V
THII_2663	PF01624	MutS domain I
THII_2663	PF05188	MutS domain II
THII_2663	PF05190	MutS family domain IV
THII_2663	PF05192	MutS domain III
THII_2663	PF14528	LAGLIDADG-like domain
THII_2663	PF14890	Intein splicing domain
THII_2664	PF00561	alpha/beta hydrolase fold
THII_2665	PF05954	Phage late control gene D protein (GPD)
THII_2666	PF01710	Transposase
THII_2666	PF13358	DDE superfamily endonuclease
THII_2669	PF10095	THII_2669
THII_2670	PF01137	RNA 3'-terminal phosphate cyclase
THII_2670	PF05189	RNA 3'-terminal phosphate cyclase (RTC), insert domain
THII_2671	PF01724	Domain of unknown function DUF29
THII_2672	PF00041	Fibronectin type III domain
THII_2672	PF00560	Leucine Rich Repeat
THII_2673	PF02225	PA domain
THII_2673	PF04389	Peptidase family M28
THII_2675	PF02036	SCP-2 sterol transfer family
THII_2676	PF01136	THII_2676
THII_2677	PF01136	THII_2677
THII_2678	PF04055	Radical SAM superfamily
THII_2678	PF16199	THII_2678
THII_2679	PF09828	THII_2679
THII_2680	PF02417	THII_2680
THII_2681	PF09828	THII_2681
THII_2682	PF13597	Anaerobic ribonucleoside-triphosphate reductase
THII_2683	PF13597	Anaerobic ribonucleoside-triphosphate reductase
THII_2684	PF04055	Radical SAM superfamily
THII_2684	PF13353	4Fe-4S single cluster domain
THII_2687	PF01710	Transposase
THII_2688	PF01872	RibD C-terminal domain
THII_2689	PF00534	Glycosyl transferases group 1
THII_2689	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
THII_2690	PF14085	THII_2690
THII_2691	PF13649	Methyltransferase domain
THII_2692	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
THII_2693	PF00990	GGDEF domain
THII_2694	PF00586	AIR synthase related protein, N-terminal domain
THII_2694	PF02769	AIR synthase related protein, C-terminal domain
THII_2695	PF01925	THII_2695
THII_2696	PF01027	Inhibitor of apoptosis-promoting Bax1
THII_2697	PF00005	ABC transporter
THII_2697	PF12848	ABC transporter
THII_2697	PF16326	THII_2697
THII_2698	PF05685	Putative restriction endonuclease
THII_2699	PF00072	Response regulator receiver domain
THII_2700	PF07963	Prokaryotic N-terminal methylation motif
THII_2700	PF08334	Type II secretion system (T2SS), protein G
THII_2701	PF13181	Tetratricopeptide repeat
THII_2701	PF13414	TPR repeat
THII_2701	PF13431	Tetratricopeptide repeat
THII_2701	PF13432	Tetratricopeptide repeat
THII_2701	PF13844	Glycosyl transferase family 41
THII_2703	PF06051	THII_2703
THII_2707	PF13614	AAA domain
THII_2708	PF01555	DNA methylase
THII_2709	PF00226	DnaJ domain
THII_2709	PF00684	DnaJ central domain
THII_2709	PF01556	DnaJ C terminal domain
THII_2710	PF00012	Hsp70 protein
THII_2711	PF01025	GrpE
THII_2712	PF01628	HrcA protein C terminal domain
THII_2712	PF03444	Winged helix-turn-helix transcription repressor, HrcA DNA-binding
THII_2713	PF01513	ATP-NAD kinase
THII_2714	PF04356	Protein of unknown function (DUF489)
THII_2716	PF05134	Type II secretion system (T2SS), protein L
THII_2716	PF12693	GspL periplasmic domain
THII_2717	PF00293	NUDIX domain
THII_2718	PF03054	tRNA methyl transferase
THII_2721	PF00994	Probable molybdopterin binding domain
THII_2721	PF03453	MoeA N-terminal region (domain I and II)
THII_2721	PF03454	MoeA C-terminal region (domain IV)
THII_2722	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
THII_2722	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
THII_2724	PF00009	Elongation factor Tu GTP binding domain
THII_2724	PF03143	Elongation factor Tu C-terminal domain
THII_2724	PF03144	Elongation factor Tu domain 2
THII_2725	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
THII_2726	PF00467	KOW motif
THII_2726	PF02357	Transcription termination factor nusG
THII_2727	PF00298	Ribosomal protein L11, RNA binding domain
THII_2727	PF03946	Ribosomal protein L11, N-terminal domain
THII_2728	PF00687	Ribosomal protein L1p/L10e family
THII_2729	PF00466	Ribosomal protein L10
THII_2730	PF00542	Ribosomal protein L7/L12 C-terminal domain
THII_2730	PF16320	THII_2730
THII_2731	PF00562	RNA polymerase Rpb2, domain 6
THII_2731	PF04560	RNA polymerase Rpb2, domain 7
THII_2731	PF04561	RNA polymerase Rpb2, domain 2
THII_2731	PF04563	RNA polymerase beta subunit
THII_2731	PF04565	RNA polymerase Rpb2, domain 3
THII_2731	PF10385	RNA polymerase beta subunit external 1 domain
THII_2732	PF00623	RNA polymerase Rpb1, domain 2
THII_2732	PF04983	RNA polymerase Rpb1, domain 3
THII_2732	PF04997	RNA polymerase Rpb1, domain 1
THII_2732	PF04998	RNA polymerase Rpb1, domain 5
THII_2732	PF05000	RNA polymerase Rpb1, domain 4
THII_2733	PF05685	Putative restriction endonuclease
THII_2734	PF13437	HlyD family secretion protein
THII_2734	PF13533	Biotin-lipoyl like
THII_2735	PF00005	ABC transporter
THII_2736	PF12698	ABC-2 family transporter protein
THII_2738	PF00005	ABC transporter
THII_2742	PF04255	Protein of unknown function (DUF433)
THII_2747	PF00270	DEAD/DEAH box helicase
THII_2747	PF00271	Helicase conserved C-terminal domain
THII_2747	PF02559	CarD-like/TRCF domain
THII_2747	PF03461	TRCF domain
THII_2748	PF02091	Glycyl-tRNA synthetase alpha subunit
THII_2749	PF02092	THII_2749
THII_2749	PF05746	DALR anticodon binding domain
THII_2750	PF01724	Domain of unknown function DUF29
THII_2751	PF00692	dUTPase
THII_2752	PF00072	Response regulator receiver domain
THII_2752	PF00158	Sigma-54 interaction domain
THII_2752	PF02954	Bacterial regulatory protein, Fis family
THII_2753	PF00512	His Kinase A (phospho-acceptor) domain
THII_2753	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2753	PF13188	PAS domain
THII_2755	PF01029	NusB family
THII_2756	PF00885	6,7-dimethyl-8-ribityllumazine synthase
THII_2757	PF00925	GTP cyclohydrolase II
THII_2757	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
THII_2758	PF05940	THII_2758
THII_2759	PF13453	THII_2759
THII_2760	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
THII_2760	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
THII_2761	PF12769	Domain of unknown function (DUF3814)
THII_2762	PF02233	NAD(P) transhydrogenase beta subunit
THII_2763	PF00313	'Cold-shock' DNA-binding domain
THII_2764	PF01565	FAD binding domain
THII_2764	PF02913	FAD linked oxidases, C-terminal domain
THII_2765	PF07963	Prokaryotic N-terminal methylation motif
THII_2767	PF07963	Prokaryotic N-terminal methylation motif
THII_2770	PF13340	THII_2770
THII_2771	PF00005	ABC transporter
THII_2773	PF05128	THII_2773
THII_2774	PF13458	Periplasmic binding protein
THII_2775	PF01145	SPFH domain / Band 7 family
THII_2777	PF13186	Iron-sulfur cluster-binding domain
THII_2778	PF00400	WD domain, G-beta repeat
THII_2778	PF00656	Caspase domain
THII_2778	PF01471	Putative peptidoglycan binding domain
THII_2779	PF02321	Outer membrane efflux protein
THII_2780	PF00884	Sulfatase
THII_2781	PF00884	Sulfatase
THII_2782	PF07993	Male sterility protein
THII_2783	PF00501	AMP-binding enzyme
THII_2783	PF00550	Phosphopantetheine attachment site
THII_2783	PF00668	Condensation domain
THII_2783	PF08242	Methyltransferase domain
THII_2785	PF05175	Methyltransferase small domain
THII_2789	PF09924	Uncharacterized conserved protein (DUF2156)
THII_2790	PF00122	E1-E2 ATPase
THII_2790	PF00702	haloacid dehalogenase-like hydrolase
THII_2791	PF06723	MreB/Mbl protein
THII_2793	PF00122	E1-E2 ATPase
THII_2793	PF00702	haloacid dehalogenase-like hydrolase
THII_2794	PF00550	Phosphopantetheine attachment site
THII_2795	PF05175	Methyltransferase small domain
THII_2796	PF00501	AMP-binding enzyme
THII_2796	PF13193	AMP-binding enzyme C-terminal domain
THII_2797	PF01947	Protein of unknown function (DUF98)
THII_2798	PF03567	Sulfotransferase family
THII_2799	PF02543	Carbamoyltransferase
THII_2799	PF16861	THII_2799
THII_2800	PF04055	Radical SAM superfamily
THII_2802	PF00034	Cytochrome c
THII_2803	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
THII_2803	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
THII_2803	PF11890	Domain of unknown function (DUF3410)
THII_2805	PF01494	FAD binding domain
THII_2806	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
THII_2806	PF06827	Zinc finger found in FPG and IleRS
THII_2806	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
THII_2807	PF10709	THII_2807
THII_2808	PF06564	YhjQ protein
THII_2808	PF09968	Uncharacterized protein domain (DUF2202)
THII_2809	PF10861	THII_2809
THII_2810	PF02580	D-Tyr-tRNA(Tyr) deacylase
THII_2811	PF01668	SmpB protein
THII_2812	PF03364	Polyketide cyclase / dehydrase and lipid transport
THII_2813	PF03658	RnfH family Ubiquitin
THII_2814	PF04355	SmpA / OmlA family
THII_2815	PF01475	Ferric uptake regulator family
THII_2816	PF00294	pfkB family carbohydrate kinase
THII_2817	PF00294	pfkB family carbohydrate kinase
THII_2819	PF01040	UbiA prenyltransferase family
THII_2820	PF13231	THII_2820
THII_2823	PF01266	FAD dependent oxidoreductase
THII_2823	PF05199	GMC oxidoreductase
THII_2824	PF04922	THII_2824
THII_2825	PF00075	RNase H
THII_2826	PF08241	Methyltransferase domain
THII_2827	PF02575	YbaB/EbfC DNA-binding family
THII_2828	PF12169	DNA polymerase III subunits gamma and tau domain III
THII_2828	PF12170	DNA polymerase III tau subunit V interacting with alpha
THII_2828	PF13177	DNA polymerase III, delta subunit
THII_2829	PF01724	Domain of unknown function DUF29
THII_2830	PF01381	Helix-turn-helix
THII_2832	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_2833	PF05016	Plasmid stabilisation system protein
THII_2834	PF03061	Thioesterase superfamily
THII_2835	PF03706	THII_2835
THII_2836	PF07690	Major Facilitator Superfamily
THII_2838	PF00072	Response regulator receiver domain
THII_2840	PF00472	RF-1 domain
THII_2840	PF03462	PCRF domain
THII_2841	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
THII_2841	PF01488	Shikimate / quinate 5-dehydrogenase
THII_2841	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
THII_2843	PF07963	Prokaryotic N-terminal methylation motif
THII_2843	PF08334	Type II secretion system (T2SS), protein G
THII_2844	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
THII_2844	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
THII_2844	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
THII_2844	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
THII_2845	PF01694	Rhomboid family
THII_2848	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
THII_2848	PF03466	LysR substrate binding domain
THII_2849	PF10047	THII_2849
THII_2850	PF01594	THII_2850
THII_2851	PF00114	Pilin (bacterial filament)
THII_2851	PF05154	THII_2851
THII_2852	PF06271	THII_2852
THII_2853	PF05685	Putative restriction endonuclease
THII_2854	PF01944	THII_2854
THII_2856	PF13559	THII_2856
THII_2857	PF16277	THII_2857
THII_2859	PF00871	Acetokinase family
THII_2861	PF13614	AAA domain
THII_2862	PF01724	Domain of unknown function DUF29
THII_2863	PF08780	Nucleotidyltransferase substrate binding protein like
THII_2864	PF01909	Nucleotidyltransferase domain
THII_2865	PF00963	Cohesin domain
THII_2868	PF00656	Caspase domain
THII_2869	PF04542	Sigma-70 region 2
THII_2871	PF12770	THII_2871
THII_2871	PF13181	Tetratricopeptide repeat
THII_2871	PF13424	Tetratricopeptide repeat
THII_2872	PF14076	THII_2872
THII_2874	PF05860	haemagglutination activity domain
THII_2875	PF02239	Cytochrome D1 heme domain
THII_2875	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_2876	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_2877	PF02239	Cytochrome D1 heme domain
THII_2881	PF13404	AsnC-type helix-turn-helix domain
THII_2882	PF04055	Radical SAM superfamily
THII_2882	PF13353	4Fe-4S single cluster domain
THII_2884	PF13473	Cupredoxin-like domain
THII_2885	PF00034	Cytochrome c
THII_2885	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_2887	PF01814	Hemerythrin HHE cation binding domain
THII_2888	PF05048	Periplasmic copper-binding protein (NosD)
THII_2889	PF12838	4Fe-4S dicluster domain
THII_2890	PF12801	THII_2890
THII_2891	PF00005	ABC transporter
THII_2892	PF05573	NosL
THII_2893	PF12679	THII_2893
THII_2897	PF02239	Cytochrome D1 heme domain
THII_2902	PF01925	THII_2902
THII_2906	PF10043	THII_2906
THII_2907	PF00391	PEP-utilising enzyme, mobile domain
THII_2907	PF02896	PEP-utilising enzyme, TIM barrel domain
THII_2907	PF05524	PEP-utilising enzyme, N-terminal
THII_2908	PF00381	PTS HPr component phosphorylation site
THII_2909	PF03610	PTS system fructose IIA component
THII_2910	PF03668	THII_2910
THII_2911	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
THII_2911	PF05221	S-adenosyl-L-homocysteine hydrolase
THII_2912	PF00438	S-adenosylmethionine synthetase, N-terminal domain
THII_2912	PF02772	S-adenosylmethionine synthetase, central domain
THII_2912	PF02773	S-adenosylmethionine synthetase, C-terminal domain
THII_2912	PF14528	LAGLIDADG-like domain
THII_2912	PF14890	Intein splicing domain
THII_2913	PF00117	Glutamine amidotransferase class-I
THII_2913	PF06418	CTP synthase N-terminus
THII_2914	PF00140	Sigma-70 factor, region 1
THII_2914	PF04539	Sigma-70 region 3
THII_2914	PF04542	Sigma-70 region 2
THII_2914	PF04545	Sigma-70, region 4
THII_2916	PF00829	Ribosomal prokaryotic L21 protein
THII_2917	PF01016	Ribosomal L27 protein
THII_2918	PF01018	GTP1/OBG
THII_2918	PF01926	50S ribosome-binding GTPase
THII_2919	PF04402	Protein of unknown function (DUF541)
THII_2921	PF14076	THII_2921
THII_2922	PF02195	ParB-like nuclease domain
THII_2923	PF01935	Domain of unknown function DUF87
THII_2923	PF05872	THII_2923
THII_2925	PF15738	THII_2925
THII_2928	PF00027	Cyclic nucleotide-binding domain
THII_2928	PF06210	THII_2928
THII_2931	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
THII_2931	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
THII_2932	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
THII_2932	PF02874	ATP synthase alpha/beta family, beta-barrel domain
THII_2933	PF00231	ATP synthase
THII_2935	PF00677	Lumazine binding domain
THII_2936	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
THII_2936	PF00306	ATP synthase alpha/beta chain, C terminal domain
THII_2936	PF02874	ATP synthase alpha/beta family, beta-barrel domain
THII_2937	PF00213	ATP synthase delta (OSCP) subunit
THII_2938	PF00430	ATP synthase B/B' CF(0)
THII_2939	PF00137	ATP synthase subunit C
THII_2940	PF00119	ATP synthase A chain
THII_2941	PF03899	THII_2941
THII_2942	PF00989	PAS fold
THII_2942	PF08447	PAS fold
THII_2942	PF08448	PAS fold
THII_2942	PF13188	PAS domain
THII_2942	PF13426	PAS domain
THII_2944	PF13578	Methyltransferase domain
THII_2945	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
THII_2946	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
THII_2946	PF01059	THII_2946
THII_2947	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
THII_2947	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
THII_2948	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
THII_2949	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
THII_2950	PF00027	Cyclic nucleotide-binding domain
THII_2951	PF07661	THII_2951
THII_2952	PF12838	4Fe-4S dicluster domain
THII_2953	PF00146	NADH dehydrogenase
THII_2954	PF00384	Molybdopterin oxidoreductase
THII_2954	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THII_2954	PF13510	2Fe-2S iron-sulfur cluster binding domain
THII_2959	PF00290	Tryptophan synthase alpha chain
THII_2960	PF00291	Pyridoxal-phosphate dependent enzyme
THII_2960	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
THII_2963	PF00563	EAL domain
THII_2963	PF00989	PAS fold
THII_2963	PF00990	GGDEF domain
THII_2963	PF05231	THII_2963
THII_2964	PF00515	Tetratricopeptide repeat
THII_2965	PF04430	Protein of unknown function (DUF498/DUF598)
THII_2966	PF03372	Endonuclease/Exonuclease/phosphatase family
THII_2967	PF02503	Polyphosphate kinase middle domain
THII_2967	PF13089	Polyphosphate kinase N-terminal domain
THII_2967	PF13090	Polyphosphate kinase C-terminal domain
THII_2968	PF00989	PAS fold
THII_2968	PF08447	PAS fold
THII_2968	PF08448	PAS fold
THII_2968	PF13188	PAS domain
THII_2968	PF13426	PAS domain
THII_2968	PF13596	PAS domain
THII_2969	PF00512	His Kinase A (phospho-acceptor) domain
THII_2969	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2969	PF02743	Cache domain
THII_2970	PF00092	von Willebrand factor type A domain
THII_2970	PF13531	Bacterial extracellular solute-binding protein
THII_2971	PF01406	tRNA synthetases class I (C) catalytic domain
THII_2971	PF09190	DALR domain
THII_2972	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2973	PF02492	CobW/HypB/UreG, nucleotide-binding domain
THII_2974	PF05685	Putative restriction endonuclease
THII_2975	PF00072	Response regulator receiver domain
THII_2975	PF00512	His Kinase A (phospho-acceptor) domain
THII_2975	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_2976	PF00989	PAS fold
THII_2976	PF00990	GGDEF domain
THII_2976	PF08447	PAS fold
THII_2976	PF08448	PAS fold
THII_2976	PF13426	PAS domain
THII_2977	PF00437	Type II/IV secretion system protein
THII_2977	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
THII_2978	PF00535	Glycosyl transferase family 2
THII_2979	PF00534	Glycosyl transferases group 1
THII_2979	PF13439	Glycosyltransferase Family 4
THII_2980	PF01168	Alanine racemase, N-terminal domain
THII_2981	PF00072	Response regulator receiver domain
THII_2981	PF00158	Sigma-54 interaction domain
THII_2982	PF01649	Ribosomal protein S20
THII_2983	PF01724	Domain of unknown function DUF29
THII_2986	PF01797	Transposase IS200 like
THII_2987	PF13847	Methyltransferase domain
THII_2988	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
THII_2989	PF17137	THII_2989
THII_2991	PF01841	Transglutaminase-like superfamily
THII_2993	PF03050	THII_2993
THII_2996	PF00071	Ras family
THII_2996	PF00400	WD domain, G-beta repeat
THII_2996	PF08357	SEFIR domain
THII_2997	PF05685	Putative restriction endonuclease
THII_2999	PF05036	Sporulation related domain
THII_3000	PF00750	tRNA synthetases class I (R)
THII_3000	PF03485	Arginyl tRNA synthetase N terminal domain
THII_3000	PF05746	DALR anticodon binding domain
THII_3001	PF06769	Plasmid encoded toxin Txe
THII_3002	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_3004	PF01381	Helix-turn-helix
THII_3006	PF00009	Elongation factor Tu GTP binding domain
THII_3006	PF00679	Elongation factor G C-terminus
THII_3006	PF03764	Elongation factor G, domain IV
THII_3006	PF14492	Elongation Factor G, domain II
THII_3007	PF04255	Protein of unknown function (DUF433)
THII_3008	PF01336	OB-fold nucleic acid binding domain
THII_3008	PF02811	PHP domain
THII_3008	PF07733	Bacterial DNA polymerase III alpha subunit
THII_3008	PF14579	Helix-hairpin-helix motif
THII_3013	PF01710	Transposase
THII_3014	PF13358	DDE superfamily endonuclease
THII_3016	PF02463	RecF/RecN/SMC N terminal domain
THII_3017	PF00106	short chain dehydrogenase
THII_3018	PF01565	FAD binding domain
THII_3019	PF02769	AIR synthase related protein, C-terminal domain
THII_3019	PF13507	CobB/CobQ-like glutamine amidotransferase domain
THII_3020	PF00989	PAS fold
THII_3020	PF00990	GGDEF domain
THII_3021	PF01979	Amidohydrolase family
THII_3022	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
THII_3023	PF10047	THII_3023
THII_3026	PF02627	Carboxymuconolactone decarboxylase family
THII_3027	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
THII_3027	PF03459	TOBE domain
THII_3028	PF13531	Bacterial extracellular solute-binding protein
THII_3029	PF10387	Protein of unknown function (DUF2442)
THII_3030	PF13711	THII_3030
THII_3031	PF00092	von Willebrand factor type A domain
THII_3032	PF04307	THII_3032
THII_3033	PF00512	His Kinase A (phospho-acceptor) domain
THII_3033	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3033	PF11808	THII_3033
THII_3034	PF00072	Response regulator receiver domain
THII_3034	PF00486	Transcriptional regulatory protein, C terminal
THII_3035	PF00294	pfkB family carbohydrate kinase
THII_3036	PF00069	Protein kinase domain
THII_3036	PF05226	THII_3036
THII_3037	PF13672	Protein phosphatase 2C
THII_3038	PF13672	Protein phosphatase 2C
THII_3039	PF03548	Outer membrane lipoprotein carrier protein LolA
THII_3042	PF00069	Protein kinase domain
THII_3042	PF00990	GGDEF domain
THII_3042	PF01590	GAF domain
THII_3042	PF08448	PAS fold
THII_3042	PF13191	AAA ATPase domain
THII_3043	PF00072	Response regulator receiver domain
THII_3043	PF00512	His Kinase A (phospho-acceptor) domain
THII_3043	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3043	PF11849	THII_3043
THII_3044	PF02369	Bacterial Ig-like domain (group 1)
THII_3044	PF09134	Invasin, domain 3
THII_3045	PF03160	Calx-beta domain
THII_3046	PF00782	Dual specificity phosphatase, catalytic domain
THII_3049	PF06144	DNA polymerase III, delta subunit
THII_3049	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
THII_3051	PF01564	Spermine/spermidine synthase
THII_3052	PF01040	UbiA prenyltransferase family
THII_3053	PF01345	THII_3053
THII_3053	PF03160	Calx-beta domain
THII_3054	PF01345	THII_3054
THII_3057	PF00483	Nucleotidyl transferase
THII_3057	PF01050	Mannose-6-phosphate isomerase
THII_3058	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_3058	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
THII_3059	PF00266	Aminotransferase class-V
THII_3060	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
THII_3060	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
THII_3062	PF00512	His Kinase A (phospho-acceptor) domain
THII_3062	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3062	PF08521	THII_3062
THII_3063	PF00072	Response regulator receiver domain
THII_3063	PF00486	Transcriptional regulatory protein, C terminal
THII_3064	PF02412	Thrombospondin type 3 repeat
THII_3067	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3068	PF01926	50S ribosome-binding GTPase
THII_3068	PF10396	GTP-binding protein TrmE N-terminus
THII_3068	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
THII_3072	PF04257	Exodeoxyribonuclease V, gamma subunit
THII_3073	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
THII_3074	PF00448	SRP54-type protein, GTPase domain
THII_3074	PF02881	SRP54-type protein, helical bundle domain
THII_3074	PF02978	Signal peptide binding domain
THII_3075	PF00005	ABC transporter
THII_3075	PF12848	ABC transporter
THII_3080	PF00795	Carbon-nitrogen hydrolase
THII_3080	PF02540	NAD synthase
THII_3081	PF05690	Thiazole biosynthesis protein ThiG
THII_3082	PF05685	Putative restriction endonuclease
THII_3084	PF15919	THII_3084
THII_3085	PF04319	THII_3085
THII_3086	PF03206	THII_3086
THII_3088	PF00682	HMGL-like
THII_3090	PF12371	THII_3090
THII_3091	PF12644	THII_3091
THII_3092	PF03190	Protein of unknown function, DUF255
THII_3093	PF02219	Methylenetetrahydrofolate reductase
THII_3094	PF00072	Response regulator receiver domain
THII_3094	PF00158	Sigma-54 interaction domain
THII_3094	PF02954	Bacterial regulatory protein, Fis family
THII_3095	PF13401	AAA domain
THII_3096	PF00263	THII_3096
THII_3096	PF07655	THII_3096
THII_3097	PF01809	THII_3097
THII_3098	PF00004	ATPase family associated with various cellular activities (AAA)
THII_3098	PF02190	ATP-dependent protease La (LON) domain
THII_3098	PF05362	Lon protease (S16) C-terminal proteolytic domain
THII_3099	PF00575	S1 RNA binding domain
THII_3099	PF00773	RNB domain
THII_3099	PF08206	Ribonuclease B OB domain
THII_3099	PF08461	Ribonuclease R winged-helix domain
THII_3100	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_3102	PF00571	CBS domain
THII_3102	PF01595	THII_3102
THII_3102	PF03471	Transporter associated domain
THII_3105	PF12139	Adenosine-5'-phosphosulfate reductase beta subunit
THII_3105	PF13187	4Fe-4S dicluster domain
THII_3106	PF00890	FAD binding domain
THII_3106	PF02910	Fumarate reductase flavoprotein C-term
THII_3107	PF01551	Peptidase family M23
THII_3108	PF01734	Patatin-like phospholipase
THII_3110	PF01322	Cytochrome C'
THII_3112	PF16576	THII_3112
THII_3113	PF00005	ABC transporter
THII_3114	PF02687	THII_3114
THII_3114	PF12704	MacB-like periplasmic core domain
THII_3115	PF02412	Thrombospondin type 3 repeat
THII_3116	PF01710	Transposase
THII_3117	PF13358	DDE superfamily endonuclease
THII_3118	PF05685	Putative restriction endonuclease
THII_3119	PF02719	Polysaccharide biosynthesis protein
THII_3119	PF13727	CoA-binding domain
THII_3120	PF02397	THII_3120
THII_3121	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
THII_3123	PF00534	Glycosyl transferases group 1
THII_3123	PF13579	Glycosyl transferase 4-like domain
THII_3124	PF10092	THII_3124
THII_3125	PF04891	THII_3125
THII_3126	PF00111	2Fe-2S iron-sulfur cluster binding domain
THII_3127	PF00111	2Fe-2S iron-sulfur cluster binding domain
THII_3128	PF00258	Flavodoxin
THII_3128	PF00753	Metallo-beta-lactamase superfamily
THII_3129	PF00037	4Fe-4S binding domain
THII_3130	PF02579	Dinitrogenase iron-molybdenum cofactor
THII_3130	PF04055	Radical SAM superfamily
THII_3131	PF08263	Leucine rich repeat N-terminal domain
THII_3131	PF12799	Leucine Rich repeats (2 copies)
THII_3133	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_3134	PF13847	Methyltransferase domain
THII_3135	PF13453	THII_3135
THII_3136	PF08443	RimK-like ATP-grasp domain
THII_3136	PF14401	THII_3136
THII_3137	PF11814	THII_3137
THII_3137	PF13673	Acetyltransferase (GNAT) domain
THII_3138	PF00248	Aldo/keto reductase family
THII_3139	PF00400	WD domain, G-beta repeat
THII_3140	PF00400	WD domain, G-beta repeat
THII_3141	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_3141	PF05228	THII_3141
THII_3142	PF04932	THII_3142
THII_3143	PF06051	THII_3143
THII_3145	PF00072	Response regulator receiver domain
THII_3145	PF00512	His Kinase A (phospho-acceptor) domain
THII_3145	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3145	PF12729	THII_3145
THII_3146	PF13379	NMT1-like family
THII_3147	PF05015	Plasmid maintenance system killer protein
THII_3148	PF01381	Helix-turn-helix
THII_3150	PF05226	THII_3150
THII_3151	PF00953	Glycosyl transferase family 4
THII_3152	PF01370	NAD dependent epimerase/dehydratase family
THII_3153	PF01435	Peptidase family M48
THII_3154	PF05685	Putative restriction endonuclease
THII_3156	PF00494	Squalene/phytoene synthase
THII_3157	PF04168	THII_3157
THII_3157	PF14403	THII_3157
THII_3161	PF04453	Organic solvent tolerance protein
THII_3162	PF01259	SAICAR synthetase
THII_3163	PF01464	Transglycosylase SLT domain
THII_3165	PF01578	THII_3165
THII_3165	PF16327	THII_3165
THII_3166	PF03100	CcmE
THII_3167	PF04995	THII_3167
THII_3168	PF13531	Bacterial extracellular solute-binding protein
THII_3169	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_3169	PF08376	Nitrate and nitrite sensing
THII_3173	PF00005	ABC transporter
THII_3174	PF13435	Cytochrome c554 and c-prime
THII_3175	PF05685	Putative restriction endonuclease
THII_3176	PF00132	Bacterial transferase hexapeptide (six repeats)
THII_3176	PF14602	Hexapeptide repeat of succinyl-transferase
THII_3177	PF00583	Acetyltransferase (GNAT) family
THII_3177	PF00696	Amino acid kinase family
THII_3179	PF01546	Peptidase family M20/M25/M40
THII_3179	PF07687	Peptidase dimerisation domain
THII_3180	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
THII_3180	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
THII_3181	PF08269	Cache domain
THII_3182	PF07929	Plasmid pRiA4b ORF-3-like protein
THII_3183	PF00560	Leucine Rich Repeat
THII_3183	PF13855	Leucine rich repeat
THII_3185	PF01136	THII_3185
THII_3185	PF16325	THII_3185
THII_3186	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
THII_3187	PF02464	Competence-damaged protein
THII_3188	PF06572	Protein of unknown function (DUF1131)
THII_3188	PF07007	Protein of unknown function (DUF1311)
THII_3190	PF05685	Putative restriction endonuclease
THII_3192	PF03894	D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
THII_3192	PF09363	XFP C-terminal domain
THII_3192	PF09364	XFP N-terminal domain
THII_3193	PF01891	Cobalt uptake substrate-specific transmembrane region
THII_3194	PF03808	THII_3194
THII_3195	PF01370	NAD dependent epimerase/dehydratase family
THII_3196	PF04055	Radical SAM superfamily
THII_3197	PF01814	Hemerythrin HHE cation binding domain
THII_3198	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
THII_3199	PF05685	Putative restriction endonuclease
THII_3200	PF03116	THII_3200
THII_3201	PF10092	THII_3201
THII_3203	PF05523	WxcM-like, C-terminal
THII_3206	PF13419	Haloacid dehalogenase-like hydrolase
THII_3208	PF00533	BRCA1 C Terminus (BRCT) domain
THII_3208	PF01653	NAD-dependent DNA ligase adenylation domain
THII_3208	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
THII_3208	PF03120	NAD-dependent DNA ligase OB-fold domain
THII_3208	PF12826	Helix-hairpin-helix motif
THII_3208	PF14520	Helix-hairpin-helix domain
THII_3210	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_3210	PF13426	PAS domain
THII_3211	PF05685	Putative restriction endonuclease
THII_3212	PF00560	Leucine Rich Repeat
THII_3212	PF08263	Leucine rich repeat N-terminal domain
THII_3213	PF00708	Acylphosphatase
THII_3213	PF01300	Telomere recombination
THII_3213	PF07503	HypF finger
THII_3214	PF05681	THII_3214
THII_3214	PF05683	Fumarase C-terminus
THII_3215	PF05685	Putative restriction endonuclease
THII_3218	PF01850	PIN domain
THII_3222	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
THII_3222	PF02785	Biotin carboxylase C-terminal domain
THII_3222	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
THII_3223	PF00364	Biotin-requiring enzyme
THII_3224	PF01220	Dehydroquinase class II
THII_3225	PF00069	Protein kinase domain
THII_3227	PF00440	Bacterial regulatory proteins, tetR family
THII_3228	PF16576	THII_3228
THII_3229	PF00873	AcrB/AcrD/AcrF family
THII_3232	PF01713	Smr domain
THII_3233	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
THII_3233	PF03900	Porphobilinogen deaminase, C-terminal domain
THII_3234	PF13614	AAA domain
THII_3238	PF12784	THII_3238
THII_3239	PF01724	Domain of unknown function DUF29
THII_3240	PF06165	Glycosyltransferase family 36
THII_3240	PF10091	Putative glucoamylase
THII_3240	PF17167	THII_3240
THII_3241	PF00027	Cyclic nucleotide-binding domain
THII_3241	PF13545	Crp-like helix-turn-helix domain
THII_3245	PF04366	THII_3245
THII_3246	PF04972	BON domain
THII_3247	PF05532	CsbD-like
THII_3249	PF13358	DDE superfamily endonuclease
THII_3250	PF05088	THII_3250
THII_3251	PF03918	Cytochrome C biogenesis protein
THII_3252	PF13432	Tetratricopeptide repeat
THII_3253	PF00805	Pentapeptide repeats (8 copies)
THII_3254	PF07788	THII_3254
THII_3254	PF12644	THII_3254
THII_3256	PF05685	Putative restriction endonuclease
THII_3257	PF01724	Domain of unknown function DUF29
THII_3258	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
THII_3258	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_3261	PF00384	Molybdopterin oxidoreductase
THII_3261	PF01568	Molydopterin dinucleotide binding domain
THII_3261	PF10518	TAT (twin-arginine translocation) pathway signal sequence
THII_3262	PF12800	4Fe-4S binding domain
THII_3262	PF13247	4Fe-4S dicluster domain
THII_3263	PF02613	Nitrate reductase delta subunit
THII_3265	PF14464	Prokaryotic homologs of the JAB domain
THII_3266	PF07963	Prokaryotic N-terminal methylation motif
THII_3267	PF07963	Prokaryotic N-terminal methylation motif
THII_3268	PF07963	Prokaryotic N-terminal methylation motif
THII_3268	PF16074	THII_3268
THII_3270	PF05567	Neisseria PilC beta-propeller domain
THII_3271	PF07963	Prokaryotic N-terminal methylation motif
THII_3271	PF16732	THII_3271
THII_3275	PF03130	PBS lyase HEAT-like repeat
THII_3277	PF13676	TIR domain
THII_3278	PF00472	RF-1 domain
THII_3278	PF03462	PCRF domain
THII_3279	PF03775	Septum formation inhibitor MinC, C-terminal domain
THII_3279	PF05209	Septum formation inhibitor MinC, N-terminal domain
THII_3280	PF13614	AAA domain
THII_3281	PF03776	Septum formation topological specificity factor MinE
THII_3283	PF00801	PKD domain
THII_3283	PF04151	Bacterial pre-peptidase C-terminal domain
THII_3285	PF00793	DAHP synthetase I family
THII_3286	PF07021	Methionine biosynthesis protein MetW
THII_3287	PF00561	alpha/beta hydrolase fold
THII_3288	PF00588	SpoU rRNA Methylase family
THII_3289	PF05954	Phage late control gene D protein (GPD)
THII_3290	PF09937	THII_3290
THII_3293	PF01797	Transposase IS200 like
THII_3294	PF13665	THII_3294
THII_3295	PF13358	DDE superfamily endonuclease
THII_3296	PF13518	Helix-turn-helix domain
THII_3297	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
THII_3299	PF01923	Cobalamin adenosyltransferase
THII_3300	PF00482	Type II secretion system (T2SS), protein F
THII_3301	PF09594	THII_3301
THII_3302	PF01292	Prokaryotic cytochrome b561
THII_3303	PF00578	AhpC/TSA family
THII_3303	PF10417	C-terminal domain of 1-Cys peroxiredoxin
THII_3304	PF04230	THII_3304
THII_3305	PF13847	Methyltransferase domain
THII_3307	PF05853	Prokaryotic protein of unknown function (DUF849)
THII_3308	PF00583	Acetyltransferase (GNAT) family
THII_3309	PF01841	Transglutaminase-like superfamily
THII_3310	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
THII_3310	PF03466	LysR substrate binding domain
THII_3311	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain
THII_3311	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain
THII_3312	PF00101	Ribulose bisphosphate carboxylase, small chain
THII_3314	PF14279	THII_3314
THII_3315	PF00374	Nickel-dependent hydrogenase
THII_3316	PF08241	Methyltransferase domain
THII_3317	PF01724	Domain of unknown function DUF29
THII_3319	PF01895	PhoU domain
THII_3320	PF00005	ABC transporter
THII_3321	PF00528	Binding-protein-dependent transport system inner membrane component
THII_3322	PF00528	Binding-protein-dependent transport system inner membrane component
THII_3323	PF01242	6-pyruvoyl tetrahydropterin synthase
THII_3325	PF04247	THII_3325
THII_3326	PF03167	Uracil DNA glycosylase superfamily
THII_3327	PF03993	THII_3327
THII_3328	PF13202	EF hand
THII_3330	PF01894	Uncharacterised protein family UPF0047
THII_3331	PF04381	Putative exonuclease, RdgC
THII_3332	PF04754	THII_3332
THII_3333	PF07610	THII_3333
THII_3334	PF00139	Legume lectin domain
THII_3334	PF07610	THII_3334
THII_3335	PF00089	Trypsin
THII_3338	PF01116	Fructose-bisphosphate aldolase class-II
THII_3339	PF00224	Pyruvate kinase, barrel domain
THII_3339	PF02887	Pyruvate kinase, alpha/beta domain
THII_3340	PF00162	Phosphoglycerate kinase
THII_3341	PF00471	Ribosomal protein L33
THII_3343	PF00809	Pterin binding enzyme
THII_3343	PF02310	B12 binding domain
THII_3343	PF02574	Homocysteine S-methyltransferase
THII_3343	PF02607	B12 binding domain
THII_3343	PF02965	Vitamin B12 dependent methionine synthase, activation domain
THII_3344	PF01435	Peptidase family M48
THII_3345	PF00512	His Kinase A (phospho-acceptor) domain
THII_3345	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3345	PF17149	THII_3345
THII_3346	PF00497	Bacterial extracellular solute-binding proteins, family 3
THII_3347	PF00027	Cyclic nucleotide-binding domain
THII_3347	PF00924	Mechanosensitive ion channel
THII_3347	PF13458	Periplasmic binding protein
THII_3348	PF00924	Mechanosensitive ion channel
THII_3348	PF13458	Periplasmic binding protein
THII_3350	PF03781	Sulfatase-modifying factor enzyme 1
THII_3350	PF12867	DinB superfamily
THII_3351	PF10017	THII_3351
THII_3353	PF01724	Domain of unknown function DUF29
THII_3354	PF00445	Ribonuclease T2 family
THII_3355	PF02452	PemK-like protein
THII_3359	PF04255	Protein of unknown function (DUF433)
THII_3360	PF13358	DDE superfamily endonuclease
THII_3361	PF00549	CoA-ligase
THII_3361	PF02629	CoA binding domain
THII_3362	PF00549	CoA-ligase
THII_3362	PF08442	ATP-grasp domain
THII_3363	PF14437	THII_3363
THII_3364	PF03129	Anticodon binding domain
THII_3364	PF13393	Histidyl-tRNA synthetase
THII_3365	PF09976	Tetratricopeptide repeat
THII_3366	PF13360	PQQ-like domain
THII_3367	PF03235	THII_3367
THII_3372	PF07228	Stage II sporulation protein E (SpoIIE)
THII_3375	PF13304	AAA domain
THII_3376	PF05860	haemagglutination activity domain
THII_3377	PF00112	Papain family cysteine protease
THII_3378	PF01436	NHL repeat
THII_3379	PF12833	Helix-turn-helix domain
THII_3380	PF01850	PIN domain
THII_3382	PF12784	THII_3382
THII_3383	PF00041	Fibronectin type III domain
THII_3383	PF08263	Leucine rich repeat N-terminal domain
THII_3383	PF13855	Leucine rich repeat
THII_3384	PF04909	Amidohydrolase
THII_3386	PF00155	Aminotransferase class I and II
THII_3387	PF00800	Prephenate dehydratase
THII_3387	PF01817	Chorismate mutase type II
THII_3387	PF01842	ACT domain
THII_3388	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
THII_3389	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
THII_3391	PF00106	short chain dehydrogenase
THII_3392	PF01436	NHL repeat
THII_3393	PF02585	GlcNAc-PI de-N-acetylase
THII_3394	PF13641	Glycosyltransferase like family 2
THII_3395	PF00482	Type II secretion system (T2SS), protein F
THII_3396	PF00155	Aminotransferase class I and II
THII_3397	PF00742	Homoserine dehydrogenase
THII_3397	PF01842	ACT domain
THII_3397	PF03447	Homoserine dehydrogenase, NAD binding domain
THII_3398	PF12019	Type II transport protein GspH
THII_3401	PF03840	Preprotein translocase SecG subunit
THII_3402	PF00121	Triosephosphate isomerase
THII_3404	PF00815	Histidinol dehydrogenase
THII_3405	PF00475	Imidazoleglycerol-phosphate dehydratase
THII_3405	PF13419	Haloacid dehalogenase-like hydrolase
THII_3407	PF01814	Hemerythrin HHE cation binding domain
THII_3408	PF01724	Domain of unknown function DUF29
THII_3409	PF00041	Fibronectin type III domain
THII_3409	PF01364	Peptidase family C25
THII_3409	PF03785	Peptidase family C25, C terminal ig-like domain
THII_3409	PF08126	Propeptide_C25
THII_3409	PF08263	Leucine rich repeat N-terminal domain
THII_3409	PF12799	Leucine Rich repeats (2 copies)
THII_3410	PF03653	THII_3410
THII_3411	PF00625	Guanylate kinase
THII_3412	PF03755	THII_3412
THII_3412	PF08340	THII_3412
THII_3413	PF00072	Response regulator receiver domain
THII_3413	PF00512	His Kinase A (phospho-acceptor) domain
THII_3413	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3413	PF13426	PAS domain
THII_3414	PF09084	NMT1/THI5 like
THII_3415	PF00072	Response regulator receiver domain
THII_3415	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3416	PF00989	PAS fold
THII_3416	PF08447	PAS fold
THII_3417	PF08447	PAS fold
THII_3417	PF13426	PAS domain
THII_3418	PF00009	Elongation factor Tu GTP binding domain
THII_3418	PF00679	Elongation factor G C-terminus
THII_3418	PF03144	Elongation factor Tu domain 2
THII_3419	PF13385	Concanavalin A-like lectin/glucanases superfamily
THII_3420	PF00005	ABC transporter
THII_3420	PF00498	FHA domain
THII_3421	PF01761	3-dehydroquinate synthase
THII_3422	PF01202	Shikimate kinase
THII_3423	PF07786	THII_3423
THII_3426	PF12850	Calcineurin-like phosphoesterase superfamily domain
THII_3427	PF00025	ADP-ribosylation factor family
THII_3428	PF00575	S1 RNA binding domain
THII_3428	PF10150	Ribonuclease E/G family
THII_3429	PF00849	RNA pseudouridylate synthase
THII_3429	PF01479	S4 domain
THII_3430	PF13419	Haloacid dehalogenase-like hydrolase
THII_3431	PF01343	Peptidase family S49
THII_3432	PF05036	Sporulation related domain
THII_3433	PF02537	THII_3433
THII_3434	PF02641	Uncharacterized ACR, COG1993
THII_3434	PF05036	Sporulation related domain
THII_3435	PF02537	THII_3435
THII_3436	PF02641	Uncharacterized ACR, COG1993
THII_3437	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
THII_3437	PF02403	Seryl-tRNA synthetase N-terminal domain
THII_3438	PF08238	Sel1 repeat
THII_3442	PF03235	THII_3442
THII_3443	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
THII_3443	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_3444	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
THII_3444	PF00364	Biotin-requiring enzyme
THII_3444	PF02817	e3 binding domain
THII_3445	PF00676	Dehydrogenase E1 component
THII_3445	PF02779	Transketolase, pyrimidine binding domain
THII_3445	PF16078	THII_3445
THII_3445	PF16870	THII_3445
THII_3446	PF00056	lactate/malate dehydrogenase, NAD binding domain
THII_3446	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
THII_3447	PF00072	Response regulator receiver domain
THII_3447	PF00512	His Kinase A (phospho-acceptor) domain
THII_3447	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3447	PF08447	PAS fold
THII_3447	PF13426	PAS domain
THII_3448	PF00072	Response regulator receiver domain
THII_3448	PF00512	His Kinase A (phospho-acceptor) domain
THII_3448	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3449	PF00072	Response regulator receiver domain
THII_3449	PF00486	Transcriptional regulatory protein, C terminal
THII_3452	PF05685	Putative restriction endonuclease
THII_3453	PF14239	THII_3453
THII_3453	PF14279	THII_3453
THII_3454	PF05685	Putative restriction endonuclease
THII_3455	PF00842	Alanine racemase, C-terminal domain
THII_3455	PF01168	Alanine racemase, N-terminal domain
THII_3456	PF00772	DnaB-like helicase N terminal domain
THII_3456	PF03796	DnaB-like helicase C terminal domain
THII_3456	PF14528	LAGLIDADG-like domain
THII_3456	PF14890	Intein splicing domain
THII_3457	PF01281	Ribosomal protein L9, N-terminal domain
THII_3457	PF03948	Ribosomal protein L9, C-terminal domain
THII_3458	PF01084	Ribosomal protein S18
THII_3459	PF01250	Ribosomal protein S6
THII_3461	PF04079	Putative transcriptional regulators (Ypuh-like)
THII_3462	PF02616	ScpA/B protein
THII_3463	PF00579	tRNA synthetases class I (W and Y)
THII_3465	PF01300	Telomere recombination
THII_3466	PF02390	Putative methyltransferase
THII_3467	PF00072	Response regulator receiver domain
THII_3467	PF00512	His Kinase A (phospho-acceptor) domain
THII_3467	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3468	PF00069	Protein kinase domain
THII_3468	PF00072	Response regulator receiver domain
THII_3468	PF00512	His Kinase A (phospho-acceptor) domain
THII_3468	PF01590	GAF domain
THII_3468	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3468	PF13191	AAA ATPase domain
THII_3469	PF00072	Response regulator receiver domain
THII_3469	PF00512	His Kinase A (phospho-acceptor) domain
THII_3469	PF00989	PAS fold
THII_3469	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3469	PF08447	PAS fold
THII_3469	PF12729	THII_3469
THII_3469	PF13188	PAS domain
THII_3469	PF13426	PAS domain
THII_3470	PF01523	Putative modulator of DNA gyrase
THII_3471	PF01523	Putative modulator of DNA gyrase
THII_3472	PF00186	Dihydrofolate reductase
THII_3473	PF01258	Prokaryotic dksA/traR C4-type zinc finger
THII_3474	PF01724	Domain of unknown function DUF29
THII_3475	PF09967	THII_3475
THII_3475	PF13203	THII_3475
THII_3476	PF05050	Methyltransferase FkbM domain
THII_3477	PF02412	Thrombospondin type 3 repeat
THII_3480	PF00155	Aminotransferase class I and II
THII_3481	PF13500	AAA domain
THII_3482	PF13242	HAD-hyrolase-like
THII_3482	PF13344	Haloacid dehalogenase-like hydrolase
THII_3483	PF03781	Sulfatase-modifying factor enzyme 1
THII_3484	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
THII_3484	PF03129	Anticodon binding domain
THII_3484	PF04073	Aminoacyl-tRNA editing domain
THII_3485	PF00905	Penicillin binding protein transpeptidase domain
THII_3485	PF00912	Transglycosylase
THII_3486	PF01433	Peptidase family M1
THII_3486	PF04187	Protein of unknown function, DUF399
THII_3486	PF13180	PDZ domain
THII_3487	PF00534	Glycosyl transferases group 1
THII_3487	PF08323	Starch synthase catalytic domain
THII_3489	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
THII_3491	PF00534	Glycosyl transferases group 1
THII_3491	PF08323	Starch synthase catalytic domain
THII_3492	PF00892	EamA-like transporter family
THII_3493	PF08713	DNA alkylation repair enzyme
THII_3495	PF05685	Putative restriction endonuclease
THII_3497	PF09957	THII_3497
THII_3498	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
THII_3498	PF00364	Biotin-requiring enzyme
THII_3498	PF02817	e3 binding domain
THII_3499	PF00456	Transketolase, thiamine diphosphate binding domain
THII_3502	PF04055	Radical SAM superfamily
THII_3502	PF13186	Iron-sulfur cluster-binding domain
THII_3503	PF05685	Putative restriction endonuclease
THII_3504	PF00400	WD domain, G-beta repeat
THII_3504	PF07676	WD40-like Beta Propeller Repeat
THII_3506	PF08263	Leucine rich repeat N-terminal domain
THII_3509	PF04359	Protein of unknown function (DUF493)
THII_3510	PF01063	Aminotransferase class IV
THII_3511	PF00768	D-alanyl-D-alanine carboxypeptidase
THII_3511	PF07943	Penicillin-binding protein 5, C-terminal domain
THII_3512	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
THII_3513	PF13406	Transglycosylase SLT domain
THII_3514	PF01098	THII_3514
THII_3515	PF00905	Penicillin binding protein transpeptidase domain
THII_3515	PF03717	Penicillin-binding Protein dimerisation domain
THII_3516	PF04093	THII_3516
THII_3517	PF04085	rod shape-determining protein MreC
THII_3518	PF06723	MreB/Mbl protein
THII_3519	PF02686	Glu-tRNAGln amidotransferase C subunit
THII_3520	PF01425	Amidase
THII_3521	PF02637	GatB domain
THII_3521	PF02934	GatB/GatE catalytic domain
THII_3522	PF00227	Proteasome subunit
THII_3523	PF14870	Photosynthesis system II assembly factor YCF48
THII_3525	PF05685	Putative restriction endonuclease
THII_3526	PF01724	Domain of unknown function DUF29
THII_3527	PF00692	dUTPase
THII_3528	PF01883	Domain of unknown function DUF59
THII_3528	PF10609	ParA/MinD ATPase like
THII_3529	PF00571	CBS domain
THII_3530	PF02384	N-6 DNA Methylase
THII_3531	PF00805	Pentapeptide repeats (8 copies)
THII_3532	PF01497	Periplasmic binding protein
THII_3533	PF04298	THII_3533
THII_3535	PF03547	THII_3535
THII_3537	PF04228	THII_3537
THII_3540	PF03031	NLI interacting factor-like phosphatase
THII_3541	PF00206	Lyase
THII_3541	PF08328	Adenylosuccinate lyase C-terminal
THII_3542	PF02401	LytB protein
THII_3543	PF01455	HupF/HypC family
THII_3544	PF01155	Hydrogenase expression/synthesis hypA family
THII_3545	PF15780	THII_3545
THII_3546	PF13180	PDZ domain
THII_3546	PF13365	Trypsin-like peptidase domain
THII_3547	PF00348	Polyprenyl synthetase
THII_3551	PF09012	FeoC like transcriptional regulator
THII_3552	PF02421	Ferrous iron transport protein B
THII_3552	PF07664	THII_3552
THII_3552	PF07670	Nucleoside recognition
THII_3553	PF04023	FeoA domain
THII_3554	PF04023	FeoA domain
THII_3559	PF12799	Leucine Rich repeats (2 copies)
THII_3561	PF05685	Putative restriction endonuclease
THII_3562	PF00682	HMGL-like
THII_3562	PF08502	LeuA allosteric (dimerisation) domain
THII_3563	PF00782	Dual specificity phosphatase, catalytic domain
THII_3566	PF01061	THII_3566
THII_3567	PF00005	ABC transporter
THII_3568	PF13466	STAS domain
THII_3569	PF05494	Toluene tolerance, Ttg2
THII_3570	PF02470	THII_3570
THII_3571	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_3571	PF13191	AAA ATPase domain
THII_3572	PF00180	Isocitrate/isopropylmalate dehydrogenase
THII_3572	PF00571	CBS domain
THII_3574	PF01544	CorA-like Mg2+ transporter protein
THII_3575	PF13304	AAA domain
THII_3577	PF00733	Asparagine synthase
THII_3577	PF13537	Glutamine amidotransferase domain
THII_3579	PF01724	Domain of unknown function DUF29
THII_3580	PF01040	UbiA prenyltransferase family
THII_3581	PF00089	Trypsin
THII_3582	PF02618	YceG-like family
THII_3583	PF00109	Beta-ketoacyl synthase, N-terminal domain
THII_3583	PF02801	Beta-ketoacyl synthase, C-terminal domain
THII_3584	PF00550	Phosphopantetheine attachment site
THII_3585	PF13561	Enoyl-(Acyl carrier protein) reductase
THII_3586	PF00698	Acyl transferase domain
THII_3587	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
THII_3587	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
THII_3588	PF02504	Fatty acid synthesis protein
THII_3589	PF01783	Ribosomal L32p protein family
THII_3590	PF02620	THII_3590
THII_3591	PF02545	Maf-like protein
THII_3592	PF01750	Hydrogenase maturation protease
THII_3595	PF00122	E1-E2 ATPase
THII_3595	PF00403	Heavy-metal-associated domain
THII_3595	PF00702	haloacid dehalogenase-like hydrolase
THII_3595	PF12156	THII_3595
THII_3596	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
THII_3596	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
THII_3597	PF00580	UvrD/REP helicase N-terminal domain
THII_3597	PF13361	UvrD-like helicase C-terminal domain
THII_3598	PF13520	Amino acid permease
THII_3599	PF04255	Protein of unknown function (DUF433)
THII_3601	PF01710	Transposase
THII_3601	PF11187	Protein of unknown function (DUF2974)
THII_3602	PF05488	PAAR motif
THII_3604	PF05954	Phage late control gene D protein (GPD)
THII_3605	PF14281	THII_3605
THII_3606	PF14281	THII_3606
THII_3607	PF11563	Protoglobin
THII_3609	PF05685	Putative restriction endonuclease
THII_3610	PF00809	Pterin binding enzyme
THII_3612	PF00004	ATPase family associated with various cellular activities (AAA)
THII_3612	PF01434	Peptidase family M41
THII_3612	PF06480	FtsH Extracellular
THII_3613	PF01728	FtsJ-like methyltransferase
THII_3614	PF00072	Response regulator receiver domain
THII_3614	PF00512	His Kinase A (phospho-acceptor) domain
THII_3614	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3614	PF08447	PAS fold
THII_3614	PF17149	THII_3614
THII_3615	PF01909	Nucleotidyltransferase domain
THII_3615	PF01966	HD domain
THII_3615	PF08335	GlnD PII-uridylyltransferase
THII_3617	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
THII_3618	PF08240	Alcohol dehydrogenase GroES-like domain
THII_3621	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_3621	PF00672	HAMP domain
THII_3621	PF02743	Cache domain
THII_3622	PF00211	Adenylate and Guanylate cyclase catalytic domain
THII_3622	PF05226	THII_3622
THII_3623	PF00218	Indole-3-glycerol phosphate synthase
THII_3624	PF00591	Glycosyl transferase family, a/b domain
THII_3624	PF02885	Glycosyl transferase family, helical bundle domain
THII_3625	PF02080	TrkA-C domain
THII_3625	PF03600	Citrate transporter
THII_3626	PF11295	THII_3626
THII_3628	PF01138	3' exoribonuclease family, domain 1
THII_3628	PF03725	3' exoribonuclease family, domain 2
THII_3629	PF00226	DnaJ domain
THII_3629	PF03703	THII_3629
THII_3630	PF00113	Enolase, C-terminal TIM barrel domain
THII_3630	PF03952	Enolase, N-terminal domain
THII_3631	PF00793	DAHP synthetase I family
THII_3632	PF01882	THII_3632
THII_3633	PF01965	DJ-1/PfpI family
THII_3634	PF01380	SIS domain
THII_3634	PF13522	Glutamine amidotransferase domain
THII_3638	PF09994	Uncharacterized alpha/beta hydrolase domain (DUF2235)
THII_3639	PF04349	Periplasmic glucan biosynthesis protein, MdoG
THII_3641	PF13632	Glycosyl transferase family group 2
THII_3642	PF04389	Peptidase family M28
THII_3643	PF07788	THII_3643
THII_3643	PF12644	THII_3643
THII_3648	PF00512	His Kinase A (phospho-acceptor) domain
THII_3648	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3648	PF05228	THII_3648
THII_3651	PF00112	Papain family cysteine protease
THII_3651	PF14326	THII_3651
THII_3652	PF00656	Caspase domain
THII_3653	PF09972	THII_3653
THII_3654	PF04055	Radical SAM superfamily
THII_3654	PF13186	Iron-sulfur cluster-binding domain
THII_3654	PF13394	4Fe-4S single cluster domain
THII_3655	PF00999	Sodium/hydrogen exchanger family
THII_3656	PF00582	Universal stress protein family
THII_3658	PF01435	Peptidase family M48
THII_3658	PF16491	THII_3658
THII_3659	PF00929	Exonuclease
THII_3660	PF01256	Carbohydrate kinase
THII_3660	PF03853	YjeF-related protein N-terminus
THII_3661	PF02367	Uncharacterised P-loop hydrolase UPF0079
THII_3662	PF01370	NAD dependent epimerase/dehydratase family
THII_3664	PF00578	AhpC/TSA family
THII_3665	PF01464	Transglycosylase SLT domain
THII_3668	PF12850	Calcineurin-like phosphoesterase superfamily domain
THII_3671	PF13586	THII_3671
THII_3673	PF05099	Tellurite resistance protein TerB
THII_3675	PF01924	Hydrogenase formation hypA family
THII_3677	PF01594	THII_3677
THII_3678	PF12796	Ankyrin repeats (3 copies)
THII_3680	PF12770	THII_3680
THII_3682	PF00072	Response regulator receiver domain
THII_3682	PF00512	His Kinase A (phospho-acceptor) domain
THII_3682	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3682	PF07228	Stage II sporulation protein E (SpoIIE)
THII_3682	PF07494	Two component regulator propeller
THII_3682	PF07495	Y_Y_Y domain
THII_3685	PF01724	Domain of unknown function DUF29
THII_3689	PF13649	Methyltransferase domain
THII_3690	PF00037	4Fe-4S binding domain
THII_3690	PF07992	Pyridine nucleotide-disulphide oxidoreductase
THII_3690	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
THII_3692	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
THII_3693	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
THII_3693	PF17147	THII_3693
THII_3694	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
THII_3698	PF13302	Acetyltransferase (GNAT) domain
THII_3700	PF00425	chorismate binding enzyme
THII_3700	PF04715	Anthranilate synthase component I, N terminal region
THII_3701	PF13419	Haloacid dehalogenase-like hydrolase
THII_3702	PF00834	Ribulose-phosphate 3 epimerase family
THII_3705	PF05257	CHAP domain
THII_3706	PF00076	RNA recognition motif
THII_3707	PF00733	Asparagine synthase
THII_3708	PF04055	Radical SAM superfamily
THII_3710	PF07027	THII_3710
THII_3711	PF10108	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
THII_3712	PF02541	Ppx/GppA phosphatase family
THII_3714	PF13609	Gram-negative porin
THII_3715	PF00762	Ferrochelatase
THII_3716	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
THII_3716	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
THII_3719	PF02543	Carbamoyltransferase
THII_3719	PF16861	THII_3719
THII_3722	PF00072	Response regulator receiver domain
THII_3722	PF00512	His Kinase A (phospho-acceptor) domain
THII_3722	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3724	PF01180	Dihydroorotate dehydrogenase
THII_3725	PF00575	S1 RNA binding domain
THII_3725	PF09371	Tex-like protein N-terminal domain
THII_3725	PF12836	Helix-hairpin-helix motif
THII_3725	PF16921	THII_3725
THII_3726	PF01555	DNA methylase
THII_3727	PF05673	Protein of unknown function (DUF815)
THII_3728	PF00310	Glutamine amidotransferases class-II
THII_3728	PF01493	GXGXG motif
THII_3728	PF01645	Conserved region in glutamate synthase
THII_3728	PF04898	Glutamate synthase central domain
THII_3729	PF15919	THII_3729
THII_3730	PF07927	YcfA-like protein
THII_3732	PF09601	THII_3732
THII_3733	PF05015	Plasmid maintenance system killer protein
THII_3734	PF00072	Response regulator receiver domain
THII_3734	PF00512	His Kinase A (phospho-acceptor) domain
THII_3734	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3734	PF13185	GAF domain
THII_3735	PF14870	Photosynthesis system II assembly factor YCF48
THII_3736	PF00300	Histidine phosphatase superfamily (branch 1)
THII_3737	PF00117	Glutamine amidotransferase class-I
THII_3737	PF00958	GMP synthase C terminal domain
THII_3737	PF02540	NAD synthase
THII_3738	PF00639	PPIC-type PPIASE domain
THII_3739	PF00174	Oxidoreductase molybdopterin binding domain
THII_3740	PF01794	THII_3740
THII_3741	PF01648	4'-phosphopantetheinyl transferase superfamily
THII_3743	PF02602	Uroporphyrinogen-III synthase HemD
THII_3745	PF00561	alpha/beta hydrolase fold
THII_3754	PF13358	DDE superfamily endonuclease
THII_3755	PF01710	Transposase
THII_3756	PF01710	Transposase
THII_3756	PF13358	DDE superfamily endonuclease
THII_3758	PF01381	Helix-turn-helix
THII_3761	PF00271	Helicase conserved C-terminal domain
THII_3761	PF02151	UvrB/uvrC motif
THII_3761	PF04851	Type III restriction enzyme, res subunit
THII_3761	PF12344	Ultra-violet resistance protein B
THII_3762	PF00155	Aminotransferase class I and II
THII_3765	PF01134	Glucose inhibited division protein A
THII_3765	PF13932	GidA associated domain 3
THII_3766	PF01564	Spermine/spermidine synthase
THII_3766	PF17284	THII_3766
THII_3767	PF03167	Uracil DNA glycosylase superfamily
THII_3768	PF00072	Response regulator receiver domain
THII_3768	PF00563	EAL domain
THII_3768	PF00990	GGDEF domain
THII_3768	PF08447	PAS fold
THII_3768	PF08448	PAS fold
THII_3768	PF13426	PAS domain
THII_3770	PF01734	Patatin-like phospholipase
THII_3772	PF04255	Protein of unknown function (DUF433)
THII_3773	PF01546	Peptidase family M20/M25/M40
THII_3773	PF07687	Peptidase dimerisation domain
THII_3775	PF00194	Eukaryotic-type carbonic anhydrase
THII_3776	PF11159	THII_3776
THII_3777	PF12643	THII_3777
THII_3778	PF00082	Subtilase family
THII_3779	PF00300	Histidine phosphatase superfamily (branch 1)
THII_3780	PF01551	Peptidase family M23
THII_3781	PF03572	Peptidase family S41
THII_3781	PF13180	PDZ domain
THII_3782	PF01965	DJ-1/PfpI family
THII_3783	PF00285	Citrate synthase
THII_3784	PF10605	THII_3784
THII_3786	PF13181	Tetratricopeptide repeat
THII_3787	PF12680	SnoaL-like domain
THII_3788	PF07719	Tetratricopeptide repeat
THII_3788	PF13432	Tetratricopeptide repeat
THII_3789	PF13432	Tetratricopeptide repeat
THII_3790	PF00069	Protein kinase domain
THII_3790	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3790	PF13185	GAF domain
THII_3790	PF13191	AAA ATPase domain
THII_3792	PF00072	Response regulator receiver domain
THII_3792	PF00512	His Kinase A (phospho-acceptor) domain
THII_3792	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3793	PF00072	Response regulator receiver domain
THII_3793	PF00990	GGDEF domain
THII_3795	PF13682	Chemoreceptor zinc-binding domain
THII_3796	PF08870	Domain of unknown function (DUF1832)
THII_3797	PF13668	Ferritin-like domain
THII_3798	PF01494	FAD binding domain
THII_3799	PF00766	Electron transfer flavoprotein FAD-binding domain
THII_3799	PF01012	Electron transfer flavoprotein domain
THII_3800	PF01012	Electron transfer flavoprotein domain
THII_3801	PF13555	P-loop containing region of AAA domain
THII_3802	PF04480	Protein of unknown function (DUF559)
THII_3803	PF01507	Phosphoadenosine phosphosulfate reductase family
THII_3804	PF01850	PIN domain
THII_3806	PF00999	Sodium/hydrogen exchanger family
THII_3807	PF01329	Pterin 4 alpha carbinolamine dehydratase
THII_3809	PF07685	CobB/CobQ-like glutamine amidotransferase domain
THII_3809	PF13500	AAA domain
THII_3810	PF00691	OmpA family
THII_3812	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
THII_3813	PF12784	THII_3813
THII_3814	PF00027	Cyclic nucleotide-binding domain
THII_3814	PF00571	CBS domain
THII_3814	PF03445	THII_3814
THII_3814	PF10335	THII_3814
THII_3815	PF00929	Exonuclease
THII_3816	PF00474	Sodium:solute symporter family
THII_3817	PF04341	THII_3817
THII_3819	PF16363	THII_3819
THII_3820	PF10973	THII_3820
THII_3821	PF00717	Peptidase S24-like
THII_3822	PF01118	Semialdehyde dehydrogenase, NAD binding domain
THII_3822	PF02774	Semialdehyde dehydrogenase, dimerisation domain
THII_3824	PF04519	THII_3824
THII_3825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3825	PF02743	Cache domain
THII_3826	PF04186	THII_3826
THII_3827	PF03091	CutA1 divalent ion tolerance protein
THII_3828	PF02683	THII_3828
THII_3828	PF11412	Disulphide bond corrector protein DsbC
THII_3828	PF13899	Thioredoxin-like
THII_3829	PF00578	AhpC/TSA family
THII_3830	PF05685	Putative restriction endonuclease
THII_3833	PF00072	Response regulator receiver domain
THII_3833	PF00512	His Kinase A (phospho-acceptor) domain
THII_3833	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3834	PF00072	Response regulator receiver domain
THII_3834	PF00512	His Kinase A (phospho-acceptor) domain
THII_3834	PF00989	PAS fold
THII_3834	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3834	PF13188	PAS domain
THII_3835	PF00072	Response regulator receiver domain
THII_3835	PF00497	Bacterial extracellular solute-binding proteins, family 3
THII_3835	PF00512	His Kinase A (phospho-acceptor) domain
THII_3835	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
THII_3836	PF00210	Ferritin-like domain
THII_3837	PF01842	ACT domain
THII_3837	PF13740	ACT domain
THII_3838	PF01327	Polypeptide deformylase
THII_3839	PF12784	THII_3839
THII_3840	PF10049	THII_3840
THII_3841	PF10387	Protein of unknown function (DUF2442)
THII_3842	PF13711	THII_3842
THII_3843	PF00114	Pilin (bacterial filament)
THII_3843	PF07963	Prokaryotic N-terminal methylation motif
THII_3848	PF00487	THII_3848
THII_3848	PF01610	THII_3848
THII_3849	PF07963	Prokaryotic N-terminal methylation motif
THII_3850	PF00380	Ribosomal protein S9/S16
THII_3851	PF00572	Ribosomal protein L13
THII_3852	PF03372	Endonuclease/Exonuclease/phosphatase family
THII_3853	PF07788	THII_3853
THII_3853	PF12644	THII_3853
THII_3855	PF12844	Helix-turn-helix domain
THII_3857	PF00072	Response regulator receiver domain
THII_3857	PF00990	GGDEF domain
THII_3858	PF00890	FAD binding domain
THII_3859	PF02910	Fumarate reductase flavoprotein C-term
THII_3860	PF13085	2Fe-2S iron-sulfur cluster binding domain
THII_3860	PF13183	4Fe-4S dicluster domain
THII_3861	PF01464	Transglycosylase SLT domain
THII_3862	PF13489	Methyltransferase domain
THII_3862	PF13527	Acetyltransferase (GNAT) domain
THII_3863	PF12832	MFS_1 like family
THII_3864	PF01264	Chorismate synthase
THII_3865	PF01243	Pyridoxamine 5'-phosphate oxidase
THII_3866	PF00633	Helix-hairpin-helix motif
THII_3866	PF00730	HhH-GPD superfamily base excision DNA repair protein
THII_3866	PF14815	NUDIX domain
THII_3867	PF04362	Bacterial Fe(2+) trafficking
THII_3869	PF02261	Aspartate decarboxylase
THII_3870	PF00575	S1 RNA binding domain
THII_3870	PF10150	Ribonuclease E/G family
THII_3871	PF13116	THII_3871
THII_3871	PF13502	THII_3871
THII_3872	PF00072	Response regulator receiver domain
THII_3872	PF00158	Sigma-54 interaction domain
THII_3872	PF02954	Bacterial regulatory protein, Fis family
THII_3873	PF01921	tRNA synthetases class I (K)
THII_3876	PF05685	Putative restriction endonuclease
THII_3879	PF00886	Ribosomal protein S16
THII_3880	PF01782	RimM N-terminal domain
THII_3880	PF05239	PRC-barrel domain
THII_3881	PF01746	tRNA (Guanine-1)-methyltransferase
THII_3882	PF01245	Ribosomal protein L19
THII_3883	PF10411	Disulfide bond isomerase protein N-terminus
THII_3883	PF13098	Thioredoxin-like domain
THII_3884	PF05685	Putative restriction endonuclease
THII_3885	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)
THII_3887	PF13470	THII_3887
THII_3889	PF00563	EAL domain
THII_3889	PF00990	GGDEF domain
THII_3889	PF08448	PAS fold
THII_3889	PF13426	PAS domain
THII_3891	PF01145	SPFH domain / Band 7 family
THII_3892	PF02810	SEC-C motif
THII_3894	PF04612	Type II secretion system (T2SS), protein M
THII_3895	PF00583	Acetyltransferase (GNAT) family
THII_3896	PF03167	Uracil DNA glycosylase superfamily
THII_3897	PF00682	HMGL-like
THII_3897	PF08502	LeuA allosteric (dimerisation) domain
THII_3898	PF02566	OsmC-like protein
THII_3899	PF02675	S-adenosylmethionine decarboxylase
THII_3900	PF12706	Beta-lactamase superfamily domain
THII_3901	PF00753	Metallo-beta-lactamase superfamily
THII_3902	PF00072	Response regulator receiver domain
THII_3904	PF03309	Type III pantothenate kinase
THII_3905	PF03099	Biotin/lipoate A/B protein ligase family
THII_3906	PF01467	Cytidylyltransferase
THII_3907	PF02410	Oligomerisation domain
THII_3909	PF13540	Regulator of chromosome condensation (RCC1) repeat
THII_3910	PF00005	ABC transporter
THII_3910	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
THII_3911	PF00563	EAL domain
THII_3911	PF00990	GGDEF domain
THII_3912	PF03279	THII_3912
THII_3913	PF00691	OmpA family
THII_3913	PF02412	Thrombospondin type 3 repeat
THII_3915	PF01773	Na+ dependent nucleoside transporter N-terminus
THII_3915	PF07662	Na+ dependent nucleoside transporter C-terminus
THII_3915	PF07670	Nucleoside recognition
THII_3916	PF00535	Glycosyl transferase family 2
THII_3918	PF13809	THII_3918
THII_3920	PF04255	Protein of unknown function (DUF433)
THII_3921	PF01370	NAD dependent epimerase/dehydratase family
THII_3921	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
THII_3922	PF00535	Glycosyl transferase family 2
THII_3923	PF02566	OsmC-like protein
THII_3926	PF02660	THII_3926
THII_3927	PF00905	Penicillin binding protein transpeptidase domain
THII_3927	PF00912	Transglycosylase
THII_3927	PF17092	THII_3927
THII_3928	PF11104	Type IV pilus assembly protein PilM;
THII_3929	PF05137	THII_3929
THII_3930	PF04350	Pilus assembly protein, PilO
THII_3931	PF04351	Pilus assembly protein, PilP
THII_3932	PF04351	Pilus assembly protein, PilP
THII_3933	PF00263	THII_3933
THII_3933	PF03958	Bacterial type II/III secretion system short domain
THII_3933	PF11741	AMIN domain
THII_3934	PF02369	Bacterial Ig-like domain (group 1)
THII_3934	PF09134	Invasin, domain 3
THII_3936	PF15738	THII_3936
THII_3937	PF00586	AIR synthase related protein, N-terminal domain
THII_3937	PF02769	AIR synthase related protein, C-terminal domain
THII_3938	PF00551	Formyl transferase
THII_3940	PF13414	TPR repeat
THII_3940	PF13432	Tetratricopeptide repeat
THII_3940	PF13844	Glycosyl transferase family 41
THII_3941	PF00764	Arginosuccinate synthase
THII_3943	PF05685	Putative restriction endonuclease
THII_3944	PF00873	AcrB/AcrD/AcrF family
THII_3945	PF16576	THII_3945
THII_3946	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
THII_3946	PF02743	Cache domain
THII_3947	PF01510	N-acetylmuramoyl-L-alanine amidase
THII_3950	PF04012	THII_3950
THII_3954	PF04654	THII_3954
THII_3957	PF13358	DDE superfamily endonuclease
THII_3962	PF13379	NMT1-like family