THII_0001 SM00382 ATPases associated with a variety of cellular activities THII_0001 SM01086 C-terminal, D2-small domain, of ClpB protein THII_0012 SM00822 THII_0012 THII_0012 SM00825 Beta-ketoacyl synthase THII_0012 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. THII_0013 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_0021 SM00563 Phosphate acyltransferases THII_0027 SM00926 Molybdopterin oxidoreductase Fe4S4 domain THII_0030 SM00671 Sel1-like repeats. THII_0033 SM00834 Putative regulatory protein THII_0035 SM00316 Ribosomal protein S1-like RNA-binding domain THII_0036 SM00411 bacterial (prokaryotic) histone like domain THII_0037 SM00028 Tetratricopeptide repeats THII_0038 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family THII_0041 SM00028 Tetratricopeptide repeats THII_0043 SM00530 Helix-turn-helix XRE-family like proteins THII_0050 SM00052 Putative diguanylate phosphodiesterase THII_0050 SM00091 PAS domain THII_0050 SM00267 diguanylate cyclase THII_0050 SM00448 cheY-homologous receiver domain THII_0061 SM00091 PAS domain THII_0061 SM00267 diguanylate cyclase THII_0061 SM00448 cheY-homologous receiver domain THII_0067 SM00479 THII_0067 THII_0070 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_0070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_0070 SM00387 Histidine kinase-like ATPases THII_0070 SM00388 His Kinase A (phosphoacceptor) domain THII_0070 SM00448 cheY-homologous receiver domain THII_0074 SM00671 Sel1-like repeats. THII_0095 SM01130 THII_0095 THII_0097 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_0101 SM00986 Uracil DNA glycosylase superfamily THII_0101 SM00987 UreE urease accessory protein, C-terminal domain THII_0102 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_0124 SM01209 THII_0124 THII_0124 SM01210 THII_0124 THII_0125 SM01152 THII_0125 THII_0126 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_0131 SM00028 Tetratricopeptide repeats THII_0138 SM00382 ATPases associated with a variety of cellular activities THII_0144 SM00411 bacterial (prokaryotic) histone like domain THII_0145 SM00382 ATPases associated with a variety of cellular activities THII_0145 SM00464 Found in ATP-dependent protease La (LON) THII_0146 SM00382 ATPases associated with a variety of cellular activities THII_0146 SM00994 ClpX C4-type zinc finger THII_0146 SM01086 C-terminal, D2-small domain, of ClpB protein THII_0152 SM01004 Delta-aminolevulinic acid dehydratase THII_0153 SM00255 Toll - interleukin 1 - resistance THII_0154 SM00873 B3/4 domain THII_0154 SM00874 tRNA synthetase B5 domain THII_0154 SM00896 Ferredoxin-fold anticodon binding domain THII_0155 SM00411 bacterial (prokaryotic) histone like domain THII_0156 SM00422 helix_turn_helix, mercury resistance THII_0159 SM00857 Resolvase, N terminal domain THII_0177 SM00646 THII_0177 THII_0178 SM00244 prohibitin homologues THII_0181 SM00357 Cold shock protein domain THII_0181 SM00382 ATPases associated with a variety of cellular activities THII_0181 SM00959 Rho termination factor, N-terminal domain THII_0189 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_0189 SM00387 Histidine kinase-like ATPases THII_0189 SM00388 His Kinase A (phosphoacceptor) domain THII_0190 SM00382 ATPases associated with a variety of cellular activities THII_0194 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain THII_0195 SM01092 CO dehydrogenase flavoprotein C-terminal domain THII_0199 SM00849 Metallo-beta-lactamase superfamily THII_0212 SM00320 WD40 repeats THII_0213 SM00382 ATPases associated with a variety of cellular activities THII_0231 SM00347 helix_turn_helix multiple antibiotic resistance protein THII_0242 SM00046 Diacylglycerol kinase catalytic domain (presumed) THII_0248 SM01409 THII_0248 THII_0249 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. THII_0249 SM00954 Region found in RelA / SpoT proteins THII_0251 SM01011 Aminopeptidase P, N-terminal domain THII_0257 SM01230 THII_0257 THII_0260 SM00320 WD40 repeats THII_0266 SM00632 THII_0266 THII_0266 SM00642 Alpha-amylase domain THII_0267 SM00387 Histidine kinase-like ATPases THII_0267 SM00388 His Kinase A (phosphoacceptor) domain THII_0267 SM00448 cheY-homologous receiver domain THII_0268 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_0268 SM00387 Histidine kinase-like ATPases THII_0268 SM00388 His Kinase A (phosphoacceptor) domain THII_0268 SM00448 cheY-homologous receiver domain THII_0277 SM00235 Zinc-dependent metalloprotease THII_0288 SM00662 RNA polymerases D THII_0289 SM00363 S4 RNA-binding domain THII_0289 SM01390 THII_0289 THII_0301 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. THII_0302 SM01374 THII_0302 THII_0306 SM00322 K homology RNA-binding domain THII_0309 SM01382 THII_0309 THII_0309 SM01383 THII_0309 THII_0313 SM01403 THII_0313 THII_0315 SM00838 Elongation factor G C-terminus THII_0315 SM00889 Elongation factor G, domain IV THII_0328 SM00220 Serine/Threonine protein kinases, catalytic domain THII_0330 SM00663 RNA polymerase I subunit A N-terminus THII_0331 SM00073 Histidine Phosphotransfer domain THII_0331 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_0331 SM00091 PAS domain THII_0331 SM00387 Histidine kinase-like ATPases THII_0331 SM00388 His Kinase A (phosphoacceptor) domain THII_0331 SM00448 cheY-homologous receiver domain THII_0339 SM00327 von Willebrand factor (vWF) type A domain THII_0344 SM00530 Helix-turn-helix XRE-family like proteins THII_0350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_0350 SM00387 Histidine kinase-like ATPases THII_0350 SM00388 His Kinase A (phosphoacceptor) domain THII_0354 SM00387 Histidine kinase-like ATPases THII_0354 SM00388 His Kinase A (phosphoacceptor) domain THII_0354 SM00448 cheY-homologous receiver domain THII_0355 SM00244 prohibitin homologues THII_0363 SM00327 von Willebrand factor (vWF) type A domain THII_0383 SM00382 ATPases associated with a variety of cellular activities THII_0386 SM00831 Cation transporter/ATPase, N-terminus THII_0388 SM00833 Cobalamin synthesis protein cobW C-terminal domain THII_0392 SM00905 Dihydroneopterin aldolase THII_0397 SM00530 Helix-turn-helix XRE-family like proteins THII_0407 SM00382 ATPases associated with a variety of cellular activities THII_0407 SM00487 DEAD-like helicases superfamily THII_0407 SM00490 helicase superfamily c-terminal domain THII_0407 SM00847 Helicase associated domain (HA2) Add an annotation THII_0410 SM00977 TilS substrate C-terminal domain THII_0411 SM00387 Histidine kinase-like ATPases THII_0415 SM00060 Fibronectin type 3 domain THII_0415 SM00710 Parallel beta-helix repeats THII_0417 SM00841 Elongation factor P, C-terminal THII_0417 SM01185 THII_0417 THII_0421 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_0421 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. THII_0423 SM00382 ATPases associated with a variety of cellular activities THII_0425 SM00650 Ribosomal RNA adenine dimethylases THII_0426 SM00318 Staphylococcal nuclease homologues THII_0429 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_0443 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_0443 SM00091 PAS domain THII_0443 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_0443 SM00387 Histidine kinase-like ATPases THII_0443 SM00388 His Kinase A (phosphoacceptor) domain THII_0443 SM00448 cheY-homologous receiver domain THII_0444 SM00387 Histidine kinase-like ATPases THII_0444 SM00388 His Kinase A (phosphoacceptor) domain THII_0449 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_0449 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_0452 SM00028 Tetratricopeptide repeats THII_0452 SM00287 Bacterial SH3 domain homologues THII_0452 SM01324 THII_0452 THII_0453 SM00320 WD40 repeats THII_0463 SM00919 Malic enzyme, NAD binding domain THII_0463 SM01274 THII_0463 THII_0469 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain THII_0482 SM00305 Hint (Hedgehog/Intein) domain C-terminal region THII_0482 SM00306 Hint (Hedgehog/Intein) domain N-terminal region THII_0485 SM00382 ATPases associated with a variety of cellular activities THII_0487 SM00382 ATPases associated with a variety of cellular activities THII_0489 SM01321 THII_0489 THII_0492 SM00382 ATPases associated with a variety of cellular activities THII_0492 SM00448 cheY-homologous receiver domain THII_0500 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_0500 SM00387 Histidine kinase-like ATPases THII_0500 SM00388 His Kinase A (phosphoacceptor) domain THII_0500 SM00448 cheY-homologous receiver domain THII_0505 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_0506 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_0511 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_0514 SM00278 Helix-hairpin-helix DNA-binding motif class 1 THII_0527 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THII_0540 SM00448 cheY-homologous receiver domain THII_0541 SM00388 His Kinase A (phosphoacceptor) domain THII_0542 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_0542 SM00448 cheY-homologous receiver domain THII_0546 SM00966 SpoVT / AbrB like domain THII_0549 SM00448 cheY-homologous receiver domain THII_0550 SM00138 Methyltransferase, chemotaxis proteins THII_0551 SM00185 Armadillo/beta-catenin-like repeats THII_0551 SM00567 E-Z type HEAT repeats THII_0552 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_0553 SM00260 Two component signalling adaptor domain THII_0554 SM00073 Histidine Phosphotransfer domain THII_0554 SM00260 Two component signalling adaptor domain THII_0554 SM00387 Histidine kinase-like ATPases THII_0554 SM01231 THII_0554 THII_0555 SM00448 cheY-homologous receiver domain THII_0561 SM00278 Helix-hairpin-helix DNA-binding motif class 1 THII_0561 SM00465 GIY-YIG type nucleases (URI domain) THII_0570 SM00487 DEAD-like helicases superfamily THII_0570 SM00490 helicase superfamily c-terminal domain THII_0578 SM00825 Beta-ketoacyl synthase THII_0603 SM00434 DNA Topoisomerase IV THII_0636 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_0636 SM00073 Histidine Phosphotransfer domain THII_0636 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_0636 SM00091 PAS domain THII_0636 SM00387 Histidine kinase-like ATPases THII_0636 SM00388 His Kinase A (phosphoacceptor) domain THII_0636 SM00448 cheY-homologous receiver domain THII_0640 SM00968 SMC proteins Flexible Hinge Domain THII_0641 SM00771 ZipA, C-terminal domain (FtsZ-binding) THII_0645 SM00912 haemagglutination activity domain THII_0649 SM00732 Likely ribonuclease with RNase H fold. THII_0658 SM00382 ATPases associated with a variety of cellular activities THII_0662 SM00382 ATPases associated with a variety of cellular activities THII_0665 SM00710 Parallel beta-helix repeats THII_0666 SM00710 Parallel beta-helix repeats THII_0686 SM00448 cheY-homologous receiver domain THII_0686 SM00850 LytTr DNA-binding domain THII_0688 SM00460 Transglutaminase/protease-like homologues THII_0699 SM00382 ATPases associated with a variety of cellular activities THII_0700 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. THII_0705 SM00028 Tetratricopeptide repeats THII_0708 SM00851 MGS-like domain THII_0708 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain THII_0709 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain THII_0715 SM00382 ATPases associated with a variety of cellular activities THII_0729 SM00480 DNA polymerase III beta subunit THII_0745 SM00060 Fibronectin type 3 domain THII_0745 SM00710 Parallel beta-helix repeats THII_0746 SM00226 Low molecular weight phosphatase family THII_0750 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_0750 SM00387 Histidine kinase-like ATPases THII_0750 SM00388 His Kinase A (phosphoacceptor) domain THII_0750 SM00448 cheY-homologous receiver domain THII_0751 SM00091 PAS domain THII_0751 SM00387 Histidine kinase-like ATPases THII_0751 SM00388 His Kinase A (phosphoacceptor) domain THII_0751 SM00448 cheY-homologous receiver domain THII_0756 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_0756 SM00282 Laminin G domain THII_0756 SM00560 LamG-like jellyroll fold domain THII_0762 SM00382 ATPases associated with a variety of cellular activities THII_0768 SM00357 Cold shock protein domain THII_0772 SM00460 Transglutaminase/protease-like homologues THII_0774 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_0774 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_0774 SM00091 PAS domain THII_0774 SM00387 Histidine kinase-like ATPases THII_0774 SM00388 His Kinase A (phosphoacceptor) domain THII_0774 SM00448 cheY-homologous receiver domain THII_0775 SM00387 Histidine kinase-like ATPases THII_0775 SM00448 cheY-homologous receiver domain THII_0777 SM00052 Putative diguanylate phosphodiesterase THII_0777 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_0777 SM00091 PAS domain THII_0777 SM00267 diguanylate cyclase THII_0777 SM01079 THII_0777 THII_0780 SM00382 ATPases associated with a variety of cellular activities THII_0780 SM00962 SRP54-type protein, GTPase domain THII_0780 SM00963 SRP54-type protein, helical bundle domain THII_0781 SM00382 ATPases associated with a variety of cellular activities THII_0784 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain THII_0785 SM00861 Transketolase, pyrimidine binding domain THII_0792 SM00530 Helix-turn-helix XRE-family like proteins THII_0795 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_0802 SM00448 cheY-homologous receiver domain THII_0803 SM00028 Tetratricopeptide repeats THII_0803 SM00387 Histidine kinase-like ATPases THII_0803 SM00388 His Kinase A (phosphoacceptor) domain THII_0808 SM00382 ATPases associated with a variety of cellular activities THII_0811 SM00530 Helix-turn-helix XRE-family like proteins THII_0837 SM00822 THII_0837 THII_0842 SM00487 DEAD-like helicases superfamily THII_0842 SM00490 helicase superfamily c-terminal domain THII_0843 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_0864 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor THII_0868 SM00226 Low molecular weight phosphatase family THII_0872 SM00320 WD40 repeats THII_0877 SM00052 Putative diguanylate phosphodiesterase THII_0877 SM00267 diguanylate cyclase THII_0877 SM00448 cheY-homologous receiver domain THII_0878 SM00448 cheY-homologous receiver domain THII_0906 SM00382 ATPases associated with a variety of cellular activities THII_0919 SM00387 Histidine kinase-like ATPases THII_0919 SM00388 His Kinase A (phosphoacceptor) domain THII_0919 SM00448 cheY-homologous receiver domain THII_0920 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_0920 SM00876 Biotin and Thiamin Synthesis associated domain THII_0921 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_0921 SM00387 Histidine kinase-like ATPases THII_0921 SM00388 His Kinase A (phosphoacceptor) domain THII_0921 SM00448 cheY-homologous receiver domain THII_0924 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_0924 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_0930 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins THII_0935 SM00479 THII_0935 THII_0937 SM00448 cheY-homologous receiver domain THII_0940 SM00257 Lysin motif THII_0943 SM00421 helix_turn_helix, Lux Regulon THII_0943 SM00448 cheY-homologous receiver domain THII_0944 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_0944 SM00387 Histidine kinase-like ATPases THII_0947 SM00257 Lysin motif THII_0947 SM00287 Bacterial SH3 domain homologues THII_0949 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_0950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_0950 SM01358 THII_0950 THII_0953 SM00028 Tetratricopeptide repeats THII_0955 SM00327 von Willebrand factor (vWF) type A domain THII_0956 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. THII_0962 SM00487 DEAD-like helicases superfamily THII_0962 SM00490 helicase superfamily c-terminal domain THII_0964 SM00028 Tetratricopeptide repeats THII_0967 SM00421 helix_turn_helix, Lux Regulon THII_0967 SM00448 cheY-homologous receiver domain THII_0968 SM00387 Histidine kinase-like ATPases THII_0968 SM00388 His Kinase A (phosphoacceptor) domain THII_0968 SM00448 cheY-homologous receiver domain THII_0969 SM00460 Transglutaminase/protease-like homologues THII_0971 SM00382 ATPases associated with a variety of cellular activities THII_0973 SM00363 S4 RNA-binding domain THII_0978 SM00706 Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins. THII_0993 SM01321 THII_0993 THII_1006 SM00028 Tetratricopeptide repeats THII_1007 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_1007 SM00869 Autotransporter beta-domain THII_1016 SM00382 ATPases associated with a variety of cellular activities THII_1016 SM01086 C-terminal, D2-small domain, of ClpB protein THII_1018 SM00028 Tetratricopeptide repeats THII_1019 SM00387 Histidine kinase-like ATPases THII_1019 SM00388 His Kinase A (phosphoacceptor) domain THII_1019 SM00448 cheY-homologous receiver domain THII_1020 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1020 SM00091 PAS domain THII_1020 SM00387 Histidine kinase-like ATPases THII_1020 SM00388 His Kinase A (phosphoacceptor) domain THII_1020 SM00448 cheY-homologous receiver domain THII_1020 SM01079 THII_1020 THII_1021 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1021 SM00091 PAS domain THII_1021 SM00267 diguanylate cyclase THII_1021 SM00448 cheY-homologous receiver domain THII_1024 SM00966 SpoVT / AbrB like domain THII_1025 SM00849 Metallo-beta-lactamase superfamily THII_1028 SM00854 Bacterial capsule synthesis protein PGA_cap THII_1029 SM00363 S4 RNA-binding domain THII_1031 SM01329 THII_1031 THII_1032 SM00859 Semialdehyde dehydrogenase, NAD binding domain THII_1036 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1036 SM00091 PAS domain THII_1036 SM00387 Histidine kinase-like ATPases THII_1036 SM00388 His Kinase A (phosphoacceptor) domain THII_1036 SM00448 cheY-homologous receiver domain THII_1037 SM00387 Histidine kinase-like ATPases THII_1037 SM00388 His Kinase A (phosphoacceptor) domain THII_1037 SM00448 cheY-homologous receiver domain THII_1038 SM01001 AIR carboxylase THII_1046 SM00506 Appr-1"-p processing enzyme THII_1050 SM00823 Phosphopantetheine attachment site THII_1054 SM00671 Sel1-like repeats. THII_1058 SM00320 WD40 repeats THII_1100 SM00881 CoA binding domain THII_1103 SM01321 THII_1103 THII_1108 SM00477 DNA/RNA non-specific endonuclease THII_1108 SM00892 DNA/RNA non-specific endonuclease THII_1121 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1121 SM00387 Histidine kinase-like ATPases THII_1121 SM00388 His Kinase A (phosphoacceptor) domain THII_1122 SM00382 ATPases associated with a variety of cellular activities THII_1122 SM00448 cheY-homologous receiver domain THII_1126 SM00327 von Willebrand factor (vWF) type A domain THII_1128 SM00220 Serine/Threonine protein kinases, catalytic domain THII_1130 SM00388 His Kinase A (phosphoacceptor) domain THII_1130 SM00448 cheY-homologous receiver domain THII_1131 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1131 SM00091 PAS domain THII_1131 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1131 SM00387 Histidine kinase-like ATPases THII_1131 SM00388 His Kinase A (phosphoacceptor) domain THII_1131 SM00448 cheY-homologous receiver domain THII_1146 SM00857 Resolvase, N terminal domain THII_1151 SM00924 MgtE intracellular N domain THII_1152 SM00563 Phosphate acyltransferases THII_1153 SM00880 THII_1153 THII_1153 SM01118 THII_1153 THII_1158 SM00382 ATPases associated with a variety of cellular activities THII_1161 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1161 SM00387 Histidine kinase-like ATPases THII_1161 SM00388 His Kinase A (phosphoacceptor) domain THII_1161 SM00448 cheY-homologous receiver domain THII_1176 SM00316 Ribosomal protein S1-like RNA-binding domain THII_1176 SM00322 K homology RNA-binding domain THII_1180 SM01387 THII_1180 THII_1181 SM00316 Ribosomal protein S1-like RNA-binding domain THII_1181 SM00322 K homology RNA-binding domain THII_1189 SM00091 PAS domain THII_1189 SM00267 diguanylate cyclase THII_1190 SM00257 Lysin motif THII_1191 SM00387 Histidine kinase-like ATPases THII_1191 SM00388 His Kinase A (phosphoacceptor) domain THII_1191 SM00448 cheY-homologous receiver domain THII_1205 SM00382 ATPases associated with a variety of cellular activities THII_1206 SM00897 FIST N domain THII_1206 SM01204 THII_1206 THII_1210 SM01323 THII_1210 THII_1214 SM00387 Histidine kinase-like ATPases THII_1214 SM00433 TopoisomeraseII THII_1217 SM00341 Helicase and RNase D C-terminal THII_1217 SM00487 DEAD-like helicases superfamily THII_1217 SM00490 helicase superfamily c-terminal domain THII_1217 SM00956 THII_1217 THII_1226 SM01259 THII_1226 THII_1239 SM00967 RNA 2'-O ribose methyltransferase substrate binding THII_1241 SM00530 Helix-turn-helix XRE-family like proteins THII_1243 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_1243 SM00387 Histidine kinase-like ATPases THII_1243 SM00388 His Kinase A (phosphoacceptor) domain THII_1243 SM00448 cheY-homologous receiver domain THII_1243 SM01358 THII_1243 THII_1244 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_1244 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1255 SM00382 ATPases associated with a variety of cellular activities THII_1259 SM00116 Domain in cystathionine beta-synthase and other proteins. THII_1270 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs THII_1270 SM00474 3'-5' exonuclease THII_1270 SM00475 5'-3' exonuclease THII_1270 SM00482 DNA polymerase A domain THII_1283 SM00073 Histidine Phosphotransfer domain THII_1283 SM00260 Two component signalling adaptor domain THII_1283 SM00387 Histidine kinase-like ATPases THII_1283 SM00448 cheY-homologous receiver domain THII_1283 SM01231 THII_1283 THII_1285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_1286 SM00260 Two component signalling adaptor domain THII_1287 SM00448 cheY-homologous receiver domain THII_1288 SM00448 cheY-homologous receiver domain THII_1291 SM00960 Roadblock/LC7 domain THII_1300 SM00955 THII_1300 THII_1301 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1301 SM00387 Histidine kinase-like ATPases THII_1301 SM00388 His Kinase A (phosphoacceptor) domain THII_1302 SM00852 Probable molybdopterin binding domain THII_1308 SM00507 HNH nucleases THII_1314 SM00382 ATPases associated with a variety of cellular activities THII_1316 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_1321 SM00382 ATPases associated with a variety of cellular activities THII_1323 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. THII_1331 SM00479 THII_1331 THII_1364 SM00052 Putative diguanylate phosphodiesterase THII_1364 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1364 SM00267 diguanylate cyclase THII_1365 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1365 SM00091 PAS domain THII_1365 SM00387 Histidine kinase-like ATPases THII_1365 SM00388 His Kinase A (phosphoacceptor) domain THII_1365 SM00448 cheY-homologous receiver domain THII_1366 SM00387 Histidine kinase-like ATPases THII_1366 SM00388 His Kinase A (phosphoacceptor) domain THII_1366 SM00448 cheY-homologous receiver domain THII_1376 SM01060 THII_1376 THII_1380 SM00957 SecA DEAD-like domain THII_1380 SM00958 SecA preprotein cross-linking domain THII_1388 SM00450 Rhodanese Homology Domain THII_1395 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1395 SM00091 PAS domain THII_1395 SM00387 Histidine kinase-like ATPases THII_1395 SM00388 His Kinase A (phosphoacceptor) domain THII_1395 SM00448 cheY-homologous receiver domain THII_1395 SM01079 THII_1395 THII_1396 SM00387 Histidine kinase-like ATPases THII_1396 SM00388 His Kinase A (phosphoacceptor) domain THII_1396 SM00448 cheY-homologous receiver domain THII_1397 SM00562 THII_1397 THII_1399 SM00028 Tetratricopeptide repeats THII_1405 SM00704 CDGSH-type zinc finger. Function unknown. THII_1406 SM00487 DEAD-like helicases superfamily THII_1406 SM00490 helicase superfamily c-terminal domain THII_1409 SM00881 CoA binding domain THII_1411 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain THII_1413 SM00305 Hint (Hedgehog/Intein) domain C-terminal region THII_1413 SM00306 Hint (Hedgehog/Intein) domain N-terminal region THII_1413 SM00382 ATPases associated with a variety of cellular activities THII_1424 SM00316 Ribosomal protein S1-like RNA-binding domain THII_1425 SM00226 Low molecular weight phosphatase family THII_1439 SM00834 Putative regulatory protein THII_1454 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_1454 SM00387 Histidine kinase-like ATPases THII_1455 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_1465 SM00861 Transketolase, pyrimidine binding domain THII_1473 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_1485 SM00487 DEAD-like helicases superfamily THII_1485 SM00490 helicase superfamily c-terminal domain THII_1486 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_1489 SM00883 Chaperonin 10 Kd subunit THII_1495 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. THII_1495 SM00954 Region found in RelA / SpoT proteins THII_1496 SM00382 ATPases associated with a variety of cellular activities THII_1502 SM00912 haemagglutination activity domain THII_1503 SM00382 ATPases associated with a variety of cellular activities THII_1506 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_1514 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_1514 SM00220 Serine/Threonine protein kinases, catalytic domain THII_1514 SM00387 Histidine kinase-like ATPases THII_1514 SM00388 His Kinase A (phosphoacceptor) domain THII_1517 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1517 SM00387 Histidine kinase-like ATPases THII_1517 SM00388 His Kinase A (phosphoacceptor) domain THII_1517 SM00448 cheY-homologous receiver domain THII_1520 SM01321 THII_1520 THII_1523 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THII_1524 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region THII_1531 SM00382 ATPases associated with a variety of cellular activities THII_1537 SM00487 DEAD-like helicases superfamily THII_1537 SM00490 helicase superfamily c-terminal domain THII_1540 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1540 SM00091 PAS domain THII_1540 SM00387 Histidine kinase-like ATPases THII_1540 SM00388 His Kinase A (phosphoacceptor) domain THII_1540 SM00448 cheY-homologous receiver domain THII_1541 SM00267 diguanylate cyclase THII_1541 SM00448 cheY-homologous receiver domain THII_1543 SM00363 S4 RNA-binding domain THII_1555 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_1570 SM00448 cheY-homologous receiver domain THII_1570 SM00862 Transcriptional regulatory protein, C terminal THII_1571 SM00387 Histidine kinase-like ATPases THII_1571 SM00388 His Kinase A (phosphoacceptor) domain THII_1574 SM00255 Toll - interleukin 1 - resistance THII_1574 SM00320 WD40 repeats THII_1583 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_1583 SM00448 cheY-homologous receiver domain THII_1584 SM00062 Bacterial periplasmic substrate-binding proteins THII_1585 SM00387 Histidine kinase-like ATPases THII_1597 SM00382 ATPases associated with a variety of cellular activities THII_1597 SM01086 C-terminal, D2-small domain, of ClpB protein THII_1605 SM00382 ATPases associated with a variety of cellular activities THII_1624 SM00448 cheY-homologous receiver domain THII_1624 SM00862 Transcriptional regulatory protein, C terminal THII_1625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1625 SM00387 Histidine kinase-like ATPases THII_1625 SM00388 His Kinase A (phosphoacceptor) domain THII_1627 SM00054 EF-hand, calcium binding motif THII_1630 SM00173 Ras subfamily of RAS small GTPases THII_1630 SM00174 Rho (Ras homology) subfamily of Ras-like small GTPases THII_1630 SM00175 Rab subfamily of small GTPases THII_1631 SM00387 Histidine kinase-like ATPases THII_1631 SM00388 His Kinase A (phosphoacceptor) domain THII_1631 SM00448 cheY-homologous receiver domain THII_1632 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_1633 SM00798 AICARFT/IMPCHase bienzyme THII_1633 SM00851 MGS-like domain THII_1663 SM00382 ATPases associated with a variety of cellular activities THII_1664 SM00382 ATPases associated with a variety of cellular activities THII_1675 SM00887 Ethylbenzene dehydrogenase THII_1682 SM00364 Leucine-rich repeats, bacterial type THII_1688 SM01264 THII_1688 THII_1689 SM00327 von Willebrand factor (vWF) type A domain THII_1693 SM00248 ankyrin repeats THII_1717 SM00829 Enoylreductase THII_1727 SM00952 THII_1727 THII_1738 SM00935 Outer membrane protein (OmpH-like) THII_1740 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. THII_1752 SM00135 Low-density lipoprotein-receptor YWTD domain THII_1752 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_1752 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_1752 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_1754 SM00984 UDP binding domain THII_1770 SM00100 Cyclic nucleotide-monophosphate binding domain THII_1770 SM00419 helix_turn_helix, cAMP Regulatory protein THII_1773 SM00904 Riboflavin kinase THII_1776 SM00267 diguanylate cyclase THII_1776 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1777 SM00387 Histidine kinase-like ATPases THII_1777 SM00388 His Kinase A (phosphoacceptor) domain THII_1778 SM00926 Molybdopterin oxidoreductase Fe4S4 domain THII_1779 SM00235 Zinc-dependent metalloprotease THII_1785 SM00448 cheY-homologous receiver domain THII_1785 SM01012 THII_1785 THII_1786 SM00758 THII_1786 THII_1787 SM00912 haemagglutination activity domain THII_1789 SM00382 ATPases associated with a variety of cellular activities THII_1796 SM00116 Domain in cystathionine beta-synthase and other proteins. THII_1796 SM01091 Transporter associated domain THII_1799 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_1802 SM00450 Rhodanese Homology Domain THII_1804 SM00487 DEAD-like helicases superfamily THII_1804 SM00490 helicase superfamily c-terminal domain THII_1820 SM00054 EF-hand, calcium binding motif THII_1831 SM01321 THII_1831 THII_1833 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_1833 SM00091 PAS domain THII_1834 SM00387 Histidine kinase-like ATPases THII_1834 SM00433 TopoisomeraseII THII_1846 SM00100 Cyclic nucleotide-monophosphate binding domain THII_1847 SM00387 Histidine kinase-like ATPases THII_1847 SM00448 cheY-homologous receiver domain THII_1849 SM00387 Histidine kinase-like ATPases THII_1849 SM00388 His Kinase A (phosphoacceptor) domain THII_1849 SM00448 cheY-homologous receiver domain THII_1867 SM00028 Tetratricopeptide repeats THII_1874 SM00861 Transketolase, pyrimidine binding domain THII_1879 SM00945 ProQ/FINO family THII_1884 SM00387 Histidine kinase-like ATPases THII_1884 SM00388 His Kinase A (phosphoacceptor) domain THII_1884 SM00448 cheY-homologous receiver domain THII_1894 SM00054 EF-hand, calcium binding motif THII_1898 SM00382 ATPases associated with a variety of cellular activities THII_1904 SM00981 THII_1904 THII_1907 SM00400 zinc finger THII_1907 SM00493 THII_1907 THII_1913 SM00052 Putative diguanylate phosphodiesterase THII_1913 SM00267 diguanylate cyclase THII_1917 SM00382 ATPases associated with a variety of cellular activities THII_1922 SM00028 Tetratricopeptide repeats THII_1924 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_1925 SM00260 Two component signalling adaptor domain THII_1926 SM00028 Tetratricopeptide repeats THII_1926 SM00138 Methyltransferase, chemotaxis proteins THII_1927 SM00260 Two component signalling adaptor domain THII_1928 SM00073 Histidine Phosphotransfer domain THII_1928 SM00260 Two component signalling adaptor domain THII_1928 SM00387 Histidine kinase-like ATPases THII_1928 SM00448 cheY-homologous receiver domain THII_1929 SM00448 cheY-homologous receiver domain THII_1930 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_1930 SM00448 cheY-homologous receiver domain THII_1938 SM00912 haemagglutination activity domain THII_1945 SM01321 THII_1945 THII_1949 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_1949 SM00387 Histidine kinase-like ATPases THII_1949 SM00388 His Kinase A (phosphoacceptor) domain THII_1949 SM00448 cheY-homologous receiver domain THII_1951 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_1951 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1951 SM00387 Histidine kinase-like ATPases THII_1951 SM00388 His Kinase A (phosphoacceptor) domain THII_1951 SM00448 cheY-homologous receiver domain THII_1954 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_1954 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1954 SM00387 Histidine kinase-like ATPases THII_1954 SM00388 His Kinase A (phosphoacceptor) domain THII_1954 SM00448 cheY-homologous receiver domain THII_1954 SM01358 THII_1954 THII_1956 SM00267 diguanylate cyclase THII_1969 SM00382 ATPases associated with a variety of cellular activities THII_1975 SM00112 Cadherin repeats. THII_1983 SM00448 cheY-homologous receiver domain THII_1984 SM00448 cheY-homologous receiver domain THII_1987 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_1987 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_1988 SM00073 Histidine Phosphotransfer domain THII_1988 SM00260 Two component signalling adaptor domain THII_1988 SM00387 Histidine kinase-like ATPases THII_1988 SM00448 cheY-homologous receiver domain THII_1988 SM01231 THII_1988 THII_1992 SM00706 Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins. THII_2000 SM00670 Large family of predicted nucleotide-binding domains THII_2002 SM00530 Helix-turn-helix XRE-family like proteins THII_2023 SM00382 ATPases associated with a variety of cellular activities THII_2042 SM00530 Helix-turn-helix XRE-family like proteins THII_2048 SM00020 Trypsin-like serine protease THII_2049 SM00487 DEAD-like helicases superfamily THII_2049 SM00490 helicase superfamily c-terminal domain THII_2050 SM01058 CarD-like/TRCF domain THII_2053 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_2053 SM00091 PAS domain THII_2053 SM00267 diguanylate cyclase THII_2054 SM01359 THII_2054 THII_2054 SM01360 THII_2054 THII_2062 SM00960 Roadblock/LC7 domain THII_2080 SM00028 Tetratricopeptide repeats THII_2085 SM00448 cheY-homologous receiver domain THII_2089 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_2090 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase THII_2098 SM01007 Class II Aldolase and Adducin N-terminal domain THII_2099 SM01234 THII_2099 THII_2100 SM00382 ATPases associated with a variety of cellular activities THII_2106 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. THII_2109 SM00382 ATPases associated with a variety of cellular activities THII_2115 SM00642 Alpha-amylase domain THII_2120 SM00320 WD40 repeats THII_2123 SM00563 Phosphate acyltransferases THII_2126 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_2140 SM00028 Tetratricopeptide repeats THII_2144 SM00563 Phosphate acyltransferases THII_2161 SM00900 THII_2161 THII_2168 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_2168 SM00073 Histidine Phosphotransfer domain THII_2168 SM00387 Histidine kinase-like ATPases THII_2168 SM00388 His Kinase A (phosphoacceptor) domain THII_2168 SM00448 cheY-homologous receiver domain THII_2169 SM00387 Histidine kinase-like ATPases THII_2169 SM00388 His Kinase A (phosphoacceptor) domain THII_2169 SM00448 cheY-homologous receiver domain THII_2175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_2175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_2176 SM00260 Two component signalling adaptor domain THII_2177 SM00073 Histidine Phosphotransfer domain THII_2177 SM00260 Two component signalling adaptor domain THII_2177 SM00387 Histidine kinase-like ATPases THII_2177 SM01231 THII_2177 THII_2178 SM00448 cheY-homologous receiver domain THII_2179 SM00382 ATPases associated with a variety of cellular activities THII_2183 SM00093 SERine Proteinase INhibitors THII_2185 SM00363 S4 RNA-binding domain THII_2188 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_2188 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_2201 SM00823 Phosphopantetheine attachment site THII_2201 SM00825 Beta-ketoacyl synthase THII_2201 SM01294 THII_2201 THII_2202 SM00822 THII_2202 THII_2202 SM00823 Phosphopantetheine attachment site THII_2202 SM00825 Beta-ketoacyl synthase THII_2202 SM00826 THII_2202 THII_2202 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. THII_2202 SM01294 THII_2202 THII_2208 SM00822 THII_2208 THII_2208 SM00823 Phosphopantetheine attachment site THII_2208 SM00825 Beta-ketoacyl synthase THII_2209 SM00822 THII_2209 THII_2209 SM00823 Phosphopantetheine attachment site THII_2209 SM00825 Beta-ketoacyl synthase THII_2209 SM00826 THII_2209 THII_2209 SM00829 Enoylreductase THII_2209 SM01294 THII_2209 THII_2215 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. THII_2217 SM00825 Beta-ketoacyl synthase THII_2239 SM01321 THII_2239 THII_2256 SM00857 Resolvase, N terminal domain THII_2263 SM00382 ATPases associated with a variety of cellular activities THII_2273 SM00769 Water Stress and Hypersensitive response THII_2282 SM00530 Helix-turn-helix XRE-family like proteins THII_2286 SM00271 DnaJ molecular chaperone homology domain THII_2290 SM00287 Bacterial SH3 domain homologues THII_2294 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_2294 SM00091 PAS domain THII_2294 SM00387 Histidine kinase-like ATPases THII_2294 SM00388 His Kinase A (phosphoacceptor) domain THII_2294 SM00448 cheY-homologous receiver domain THII_2296 SM00138 Methyltransferase, chemotaxis proteins THII_2297 SM00028 Tetratricopeptide repeats THII_2308 SM01400 THII_2308 THII_2311 SM00028 Tetratricopeptide repeats THII_2313 SM00670 Large family of predicted nucleotide-binding domains THII_2314 SM00116 Domain in cystathionine beta-synthase and other proteins. THII_2314 SM01240 THII_2314 THII_2315 SM00327 von Willebrand factor (vWF) type A domain THII_2316 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_2325 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_2325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_2325 SM00387 Histidine kinase-like ATPases THII_2325 SM00388 His Kinase A (phosphoacceptor) domain THII_2325 SM00448 cheY-homologous receiver domain THII_2339 SM00450 Rhodanese Homology Domain THII_2345 SM00382 ATPases associated with a variety of cellular activities THII_2345 SM00448 cheY-homologous receiver domain THII_2348 SM00116 Domain in cystathionine beta-synthase and other proteins. THII_2353 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_2353 SM01080 THII_2353 THII_2360 SM00382 ATPases associated with a variety of cellular activities THII_2360 SM01086 C-terminal, D2-small domain, of ClpB protein THII_2364 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_2371 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain THII_2373 SM00271 DnaJ molecular chaperone homology domain THII_2375 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_2375 SM00220 Serine/Threonine protein kinases, catalytic domain THII_2375 SM00387 Histidine kinase-like ATPases THII_2375 SM00388 His Kinase A (phosphoacceptor) domain THII_2378 SM00100 Cyclic nucleotide-monophosphate binding domain THII_2387 SM00912 haemagglutination activity domain THII_2388 SM00028 Tetratricopeptide repeats THII_2392 SM00244 prohibitin homologues THII_2393 SM00244 prohibitin homologues THII_2396 SM00788 Adenylosuccinate synthetase THII_2406 SM00448 cheY-homologous receiver domain THII_2406 SM00862 Transcriptional regulatory protein, C terminal THII_2407 SM00387 Histidine kinase-like ATPases THII_2407 SM00388 His Kinase A (phosphoacceptor) domain THII_2415 SM00478 endonuclease III THII_2415 SM00525 THII_2415 THII_2426 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_2430 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain THII_2430 SM00437 Bacterial DNA topoisomerase I DNA-binding domain THII_2430 SM00493 THII_2430 THII_2432 SM00938 Nitrogen regulatory protein P-II THII_2435 SM00327 von Willebrand factor (vWF) type A domain THII_2435 SM00609 Vault protein Inter-alpha-Trypsin domain THII_2439 SM00271 DnaJ molecular chaperone homology domain THII_2440 SM00073 Histidine Phosphotransfer domain THII_2440 SM00091 PAS domain THII_2440 SM00387 Histidine kinase-like ATPases THII_2440 SM00388 His Kinase A (phosphoacceptor) domain THII_2440 SM00448 cheY-homologous receiver domain THII_2442 SM00448 cheY-homologous receiver domain THII_2444 SM00138 Methyltransferase, chemotaxis proteins THII_2446 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_2446 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_2447 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_2447 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_2465 SM00257 Lysin motif THII_2467 SM00382 ATPases associated with a variety of cellular activities THII_2491 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. THII_2496 SM00358 Double-stranded RNA binding motif THII_2496 SM00535 Ribonuclease III family THII_2515 SM00327 von Willebrand factor (vWF) type A domain THII_2520 SM00382 ATPases associated with a variety of cellular activities THII_2521 SM01111 THII_2521 THII_2528 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_2528 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_2528 SM00091 PAS domain THII_2528 SM00387 Histidine kinase-like ATPases THII_2528 SM00388 His Kinase A (phosphoacceptor) domain THII_2528 SM00448 cheY-homologous receiver domain THII_2537 SM00842 Cell division protein FtsA THII_2538 SM00864 Tubulin/FtsZ family, GTPase domain THII_2538 SM00865 Tubulin/FtsZ family, C-terminal domain THII_2544 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins THII_2555 SM00387 Histidine kinase-like ATPases THII_2556 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_2556 SM00382 ATPases associated with a variety of cellular activities THII_2560 SM00530 Helix-turn-helix XRE-family like proteins THII_2566 SM00900 THII_2566 THII_2571 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_2571 SM00091 PAS domain THII_2571 SM00387 Histidine kinase-like ATPases THII_2572 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_2572 SM00382 ATPases associated with a variety of cellular activities THII_2573 SM01111 THII_2573 THII_2580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_2580 SM00387 Histidine kinase-like ATPases THII_2580 SM00388 His Kinase A (phosphoacceptor) domain THII_2581 SM00382 ATPases associated with a variety of cellular activities THII_2581 SM00448 cheY-homologous receiver domain THII_2582 SM00387 Histidine kinase-like ATPases THII_2582 SM00388 His Kinase A (phosphoacceptor) domain THII_2582 SM00448 cheY-homologous receiver domain THII_2583 SM00646 THII_2583 THII_2589 SM00434 DNA Topoisomerase IV THII_2592 SM00108 Bulb-type mannose-specific lectin THII_2593 SM00530 Helix-turn-helix XRE-family like proteins THII_2598 SM00450 Rhodanese Homology Domain THII_2600 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor THII_2605 SM00382 ATPases associated with a variety of cellular activities THII_2609 SM00853 MutL C terminal dimerisation domain THII_2609 SM01340 THII_2609 THII_2610 SM00062 Bacterial periplasmic substrate-binding proteins THII_2624 SM00912 haemagglutination activity domain THII_2631 SM00271 DnaJ molecular chaperone homology domain THII_2647 SM00257 Lysin motif THII_2648 SM00257 Lysin motif THII_2659 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins THII_2659 SM00710 Parallel beta-helix repeats THII_2663 SM00305 Hint (Hedgehog/Intein) domain C-terminal region THII_2663 SM00306 Hint (Hedgehog/Intein) domain N-terminal region THII_2663 SM00533 DNA-binding domain of DNA mismatch repair MUTS family THII_2663 SM00534 ATPase domain of DNA mismatch repair MUTS family THII_2672 SM00060 Fibronectin type 3 domain THII_2672 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_2672 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_2678 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_2682 SM00306 Hint (Hedgehog/Intein) domain N-terminal region THII_2693 SM00267 diguanylate cyclase THII_2697 SM00382 ATPases associated with a variety of cellular activities THII_2699 SM00448 cheY-homologous receiver domain THII_2701 SM00028 Tetratricopeptide repeats THII_2709 SM00271 DnaJ molecular chaperone homology domain THII_2721 SM00852 Probable molybdopterin binding domain THII_2722 SM01350 THII_2722 THII_2726 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. THII_2726 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. THII_2727 SM00649 Ribosomal protein L11/L12 THII_2732 SM00663 RNA polymerase I subunit A N-terminus THII_2735 SM00382 ATPases associated with a variety of cellular activities THII_2738 SM00382 ATPases associated with a variety of cellular activities THII_2747 SM00487 DEAD-like helicases superfamily THII_2747 SM00490 helicase superfamily c-terminal domain THII_2747 SM00982 THII_2747 THII_2747 SM01058 CarD-like/TRCF domain THII_2749 SM00836 DALR anticodon binding domain THII_2752 SM00382 ATPases associated with a variety of cellular activities THII_2752 SM00448 cheY-homologous receiver domain THII_2753 SM00387 Histidine kinase-like ATPases THII_2753 SM00388 His Kinase A (phosphoacceptor) domain THII_2760 SM01002 Alanine dehydrogenase/PNT, C-terminal domain THII_2760 SM01003 Alanine dehydrogenase/PNT, N-terminal domain THII_2763 SM00357 Cold shock protein domain THII_2771 SM00382 ATPases associated with a variety of cellular activities THII_2778 SM00320 WD40 repeats THII_2783 SM00823 Phosphopantetheine attachment site THII_2800 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_2806 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain THII_2806 SM01232 THII_2806 THII_2828 SM00382 ATPases associated with a variety of cellular activities THII_2830 SM00530 Helix-turn-helix XRE-family like proteins THII_2838 SM00448 cheY-homologous receiver domain THII_2840 SM00937 THII_2840 THII_2865 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins THII_2871 SM00028 Tetratricopeptide repeats THII_2874 SM00912 haemagglutination activity domain THII_2881 SM00344 helix_turn_helix ASNC type THII_2882 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_2888 SM00710 Parallel beta-helix repeats THII_2891 SM00382 ATPases associated with a variety of cellular activities THII_2895 SM00706 Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins. THII_2911 SM00996 S-adenosyl-L-homocysteine hydrolase THII_2911 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THII_2922 SM00470 ParB-like nuclease domain THII_2928 SM00100 Cyclic nucleotide-monophosphate binding domain THII_2932 SM00382 ATPases associated with a variety of cellular activities THII_2942 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_2942 SM00091 PAS domain THII_2950 SM00100 Cyclic nucleotide-monophosphate binding domain THII_2954 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region THII_2963 SM00052 Putative diguanylate phosphodiesterase THII_2963 SM00091 PAS domain THII_2963 SM00267 diguanylate cyclase THII_2964 SM00028 Tetratricopeptide repeats THII_2968 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_2968 SM00091 PAS domain THII_2969 SM00387 Histidine kinase-like ATPases THII_2969 SM00388 His Kinase A (phosphoacceptor) domain THII_2970 SM00327 von Willebrand factor (vWF) type A domain THII_2971 SM00840 THII_2971 THII_2972 SM00387 Histidine kinase-like ATPases THII_2975 SM00387 Histidine kinase-like ATPases THII_2975 SM00388 His Kinase A (phosphoacceptor) domain THII_2975 SM00448 cheY-homologous receiver domain THII_2976 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_2976 SM00091 PAS domain THII_2976 SM00267 diguanylate cyclase THII_2977 SM00382 ATPases associated with a variety of cellular activities THII_2981 SM00382 ATPases associated with a variety of cellular activities THII_2981 SM00448 cheY-homologous receiver domain THII_2986 SM01321 THII_2986 THII_2996 SM00174 Rho (Ras homology) subfamily of Ras-like small GTPases THII_2996 SM00175 Rab subfamily of small GTPases THII_2996 SM00320 WD40 repeats THII_3000 SM00836 DALR anticodon binding domain THII_3000 SM01016 Arginyl tRNA synthetase N terminal dom THII_3004 SM00530 Helix-turn-helix XRE-family like proteins THII_3006 SM00838 Elongation factor G C-terminus THII_3006 SM00889 Elongation factor G, domain IV THII_3008 SM00481 DNA polymerase alpha chain like domain THII_3019 SM01211 THII_3019 THII_3020 SM00267 diguanylate cyclase THII_3031 SM00327 von Willebrand factor (vWF) type A domain THII_3033 SM00091 PAS domain THII_3033 SM00387 Histidine kinase-like ATPases THII_3033 SM00388 His Kinase A (phosphoacceptor) domain THII_3034 SM00448 cheY-homologous receiver domain THII_3034 SM00862 Transcriptional regulatory protein, C terminal THII_3036 SM00220 Serine/Threonine protein kinases, catalytic domain THII_3036 SM01080 THII_3036 THII_3037 SM00331 Sigma factor PP2C-like phosphatases THII_3037 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain THII_3038 SM00331 Sigma factor PP2C-like phosphatases THII_3038 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain THII_3042 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_3042 SM00091 PAS domain THII_3042 SM00267 diguanylate cyclase THII_3043 SM00387 Histidine kinase-like ATPases THII_3043 SM00388 His Kinase A (phosphoacceptor) domain THII_3044 SM00634 Bacterial Ig-like domain (group 1) THII_3045 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_3053 SM00237 Domains in Na-Ca exchangers and integrin-beta4 THII_3062 SM00387 Histidine kinase-like ATPases THII_3062 SM00388 His Kinase A (phosphoacceptor) domain THII_3063 SM00448 cheY-homologous receiver domain THII_3063 SM00862 Transcriptional regulatory protein, C terminal THII_3070 SM00327 von Willebrand factor (vWF) type A domain THII_3074 SM00382 ATPases associated with a variety of cellular activities THII_3074 SM00962 SRP54-type protein, GTPase domain THII_3074 SM00963 SRP54-type protein, helical bundle domain THII_3075 SM00382 ATPases associated with a variety of cellular activities THII_3094 SM00382 ATPases associated with a variety of cellular activities THII_3094 SM00448 cheY-homologous receiver domain THII_3097 SM01234 THII_3097 THII_3098 SM00382 ATPases associated with a variety of cellular activities THII_3098 SM00464 Found in ATP-dependent protease La (LON) THII_3099 SM00316 Ribosomal protein S1-like RNA-binding domain THII_3099 SM00357 Cold shock protein domain THII_3099 SM00955 THII_3099 THII_3102 SM01091 Transporter associated domain THII_3113 SM00382 ATPases associated with a variety of cellular activities THII_3128 SM00849 Metallo-beta-lactamase superfamily THII_3131 SM00364 Leucine-rich repeats, bacterial type THII_3131 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_3131 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_3139 SM00320 WD40 repeats THII_3140 SM00320 WD40 repeats THII_3141 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_3141 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_3145 SM00387 Histidine kinase-like ATPases THII_3145 SM00388 His Kinase A (phosphoacceptor) domain THII_3145 SM00448 cheY-homologous receiver domain THII_3146 SM00062 Bacterial periplasmic substrate-binding proteins THII_3148 SM00530 Helix-turn-helix XRE-family like proteins THII_3150 SM01080 THII_3150 THII_3169 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_3169 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_3170 SM00634 Bacterial Ig-like domain (group 1) THII_3173 SM00382 ATPases associated with a variety of cellular activities THII_3183 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_3183 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_3196 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_3208 SM00278 Helix-hairpin-helix DNA-binding motif class 1 THII_3208 SM00292 breast cancer carboxy-terminal domain THII_3208 SM00532 Ligase N family THII_3210 SM00091 PAS domain THII_3210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_3210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_3212 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_3212 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_3222 SM00878 Biotin carboxylase C-terminal domain THII_3225 SM00028 Tetratricopeptide repeats THII_3232 SM00463 Small MutS-related domain THII_3240 SM01068 Putative carbohydrate binding domain THII_3241 SM00100 Cyclic nucleotide-monophosphate binding domain THII_3241 SM00419 helix_turn_helix, cAMP Regulatory protein THII_3246 SM00749 bacterial OsmY and nodulation domain THII_3252 SM00028 Tetratricopeptide repeats THII_3277 SM00255 Toll - interleukin 1 - resistance THII_3278 SM00937 THII_3278 THII_3283 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins THII_3293 SM01321 THII_3293 THII_3309 SM00460 Transglutaminase/protease-like homologues THII_3312 SM00961 Ribulose bisphosphate carboxylase, small chain THII_3314 SM00507 HNH nucleases THII_3320 SM00382 ATPases associated with a variety of cellular activities THII_3335 SM00020 Trypsin-like serine protease THII_3343 SM01018 B12 binding domain THII_3345 SM00387 Histidine kinase-like ATPases THII_3345 SM00388 His Kinase A (phosphoacceptor) domain THII_3347 SM00100 Cyclic nucleotide-monophosphate binding domain THII_3356 SM00966 SpoVT / AbrB like domain THII_3361 SM00881 CoA binding domain THII_3366 SM00564 beta-propeller repeat THII_3372 SM00331 Sigma factor PP2C-like phosphatases THII_3376 SM00912 haemagglutination activity domain THII_3377 SM00645 Papain family cysteine protease THII_3379 SM00342 helix_turn_helix, arabinose operon control protein THII_3381 SM00966 SpoVT / AbrB like domain THII_3383 SM00060 Fibronectin type 3 domain THII_3387 SM00830 Chorismate mutase type II THII_3390 SM00287 Bacterial SH3 domain homologues THII_3409 SM00060 Fibronectin type 3 domain THII_3409 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_3409 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_3411 SM00072 Guanylate kinase homologues. THII_3413 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_3413 SM00091 PAS domain THII_3413 SM00387 Histidine kinase-like ATPases THII_3413 SM00388 His Kinase A (phosphoacceptor) domain THII_3413 SM00448 cheY-homologous receiver domain THII_3415 SM00387 Histidine kinase-like ATPases THII_3415 SM00448 cheY-homologous receiver domain THII_3416 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_3416 SM00091 PAS domain THII_3417 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_3417 SM00091 PAS domain THII_3418 SM00838 Elongation factor G C-terminus THII_3420 SM00240 Forkhead associated domain THII_3420 SM00382 ATPases associated with a variety of cellular activities THII_3428 SM00316 Ribosomal protein S1-like RNA-binding domain THII_3429 SM00363 S4 RNA-binding domain THII_3438 SM00671 Sel1-like repeats. THII_3445 SM00861 Transketolase, pyrimidine binding domain THII_3447 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_3447 SM00091 PAS domain THII_3447 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_3447 SM00387 Histidine kinase-like ATPases THII_3447 SM00388 His Kinase A (phosphoacceptor) domain THII_3447 SM00448 cheY-homologous receiver domain THII_3448 SM00387 Histidine kinase-like ATPases THII_3448 SM00388 His Kinase A (phosphoacceptor) domain THII_3448 SM00448 cheY-homologous receiver domain THII_3449 SM00448 cheY-homologous receiver domain THII_3449 SM00862 Transcriptional regulatory protein, C terminal THII_3453 SM00507 HNH nucleases THII_3455 SM01005 Alanine racemase, C-terminal domain THII_3456 SM00305 Hint (Hedgehog/Intein) domain C-terminal region THII_3456 SM00306 Hint (Hedgehog/Intein) domain N-terminal region THII_3467 SM00387 Histidine kinase-like ATPases THII_3467 SM00388 His Kinase A (phosphoacceptor) domain THII_3467 SM00448 cheY-homologous receiver domain THII_3468 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_3468 SM00220 Serine/Threonine protein kinases, catalytic domain THII_3468 SM00387 Histidine kinase-like ATPases THII_3468 SM00388 His Kinase A (phosphoacceptor) domain THII_3468 SM00448 cheY-homologous receiver domain THII_3469 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_3469 SM00091 PAS domain THII_3469 SM00387 Histidine kinase-like ATPases THII_3469 SM00388 His Kinase A (phosphoacceptor) domain THII_3469 SM00448 cheY-homologous receiver domain THII_3486 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. THII_3494 SM00364 Leucine-rich repeats, bacterial type THII_3494 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_3504 SM00320 WD40 repeats THII_3506 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_3506 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_3511 SM00936 Penicillin-binding protein 5, C-terminal domain THII_3521 SM00845 GatB domain THII_3529 SM00116 Domain in cystathionine beta-synthase and other proteins. THII_3539 SM00710 Parallel beta-helix repeats THII_3546 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. THII_3553 SM00899 THII_3553 THII_3554 SM00899 THII_3554 THII_3559 SM00365 Leucine-rich repeat, SDS22-like subfamily THII_3559 SM00369 Leucine-rich repeats, typical (most populated) subfamily THII_3562 SM00917 LeuA allosteric (dimerisation) domain THII_3567 SM00382 ATPases associated with a variety of cellular activities THII_3571 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_3572 SM00116 Domain in cystathionine beta-synthase and other proteins. THII_3572 SM01329 THII_3572 THII_3575 SM00382 ATPases associated with a variety of cellular activities THII_3581 SM00020 Trypsin-like serine protease THII_3583 SM00825 Beta-ketoacyl synthase THII_3585 SM00822 THII_3585 THII_3586 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. THII_3612 SM00382 ATPases associated with a variety of cellular activities THII_3614 SM00387 Histidine kinase-like ATPases THII_3614 SM00388 His Kinase A (phosphoacceptor) domain THII_3614 SM00448 cheY-homologous receiver domain THII_3615 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. THII_3618 SM00829 Enoylreductase THII_3621 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_3621 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_3622 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain THII_3622 SM01080 THII_3622 THII_3629 SM00271 DnaJ molecular chaperone homology domain THII_3630 SM01192 THII_3630 THII_3630 SM01193 THII_3630 THII_3648 SM00387 Histidine kinase-like ATPases THII_3648 SM00388 His Kinase A (phosphoacceptor) domain THII_3651 SM00645 Papain family cysteine protease THII_3659 SM00479 THII_3659 THII_3678 SM00248 ankyrin repeats THII_3680 SM00028 Tetratricopeptide repeats THII_3682 SM00331 Sigma factor PP2C-like phosphatases THII_3682 SM00387 Histidine kinase-like ATPases THII_3682 SM00388 His Kinase A (phosphoacceptor) domain THII_3682 SM00448 cheY-homologous receiver domain THII_3706 SM00360 RNA recognition motif THII_3708 SM00729 Elongator protein 3, MiaB family, Radical SAM THII_3722 SM00387 Histidine kinase-like ATPases THII_3722 SM00388 His Kinase A (phosphoacceptor) domain THII_3722 SM00448 cheY-homologous receiver domain THII_3725 SM00316 Ribosomal protein S1-like RNA-binding domain THII_3725 SM00732 Likely ribonuclease with RNase H fold. THII_3734 SM00387 Histidine kinase-like ATPases THII_3734 SM00388 His Kinase A (phosphoacceptor) domain THII_3734 SM00448 cheY-homologous receiver domain THII_3734 SM01358 THII_3734 THII_3736 SM00855 Phosphoglycerate mutase family THII_3758 SM00530 Helix-turn-helix XRE-family like proteins THII_3761 SM00487 DEAD-like helicases superfamily THII_3761 SM00490 helicase superfamily c-terminal domain THII_3765 SM01228 THII_3765 THII_3767 SM00986 Uracil DNA glycosylase superfamily THII_3767 SM00987 UreE urease accessory protein, C-terminal domain THII_3768 SM00052 Putative diguanylate phosphodiesterase THII_3768 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_3768 SM00091 PAS domain THII_3768 SM00267 diguanylate cyclase THII_3768 SM00448 cheY-homologous receiver domain THII_3775 SM01057 Eukaryotic-type carbonic anhydrase THII_3779 SM00855 Phosphoglycerate mutase family THII_3781 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. THII_3781 SM00245 tail specific protease THII_3786 SM00028 Tetratricopeptide repeats THII_3788 SM00028 Tetratricopeptide repeats THII_3789 SM00028 Tetratricopeptide repeats THII_3790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. THII_3790 SM00387 Histidine kinase-like ATPases THII_3792 SM00387 Histidine kinase-like ATPases THII_3792 SM00388 His Kinase A (phosphoacceptor) domain THII_3792 SM00448 cheY-homologous receiver domain THII_3793 SM00267 diguanylate cyclase THII_3793 SM00448 cheY-homologous receiver domain THII_3799 SM00893 Electron transfer flavoprotein domain THII_3800 SM00893 Electron transfer flavoprotein domain THII_3815 SM00479 THII_3815 THII_3822 SM00859 Semialdehyde dehydrogenase, NAD binding domain THII_3825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_3825 SM00387 Histidine kinase-like ATPases THII_3831 SM00327 von Willebrand factor (vWF) type A domain THII_3832 SM00327 von Willebrand factor (vWF) type A domain THII_3833 SM00387 Histidine kinase-like ATPases THII_3833 SM00388 His Kinase A (phosphoacceptor) domain THII_3833 SM00448 cheY-homologous receiver domain THII_3834 SM00091 PAS domain THII_3834 SM00387 Histidine kinase-like ATPases THII_3834 SM00388 His Kinase A (phosphoacceptor) domain THII_3834 SM00448 cheY-homologous receiver domain THII_3835 SM00062 Bacterial periplasmic substrate-binding proteins THII_3835 SM00387 Histidine kinase-like ATPases THII_3835 SM00388 His Kinase A (phosphoacceptor) domain THII_3835 SM00448 cheY-homologous receiver domain THII_3855 SM00530 Helix-turn-helix XRE-family like proteins THII_3857 SM00267 diguanylate cyclase THII_3857 SM00448 cheY-homologous receiver domain THII_3866 SM00478 endonuclease III THII_3870 SM00316 Ribosomal protein S1-like RNA-binding domain THII_3872 SM00382 ATPases associated with a variety of cellular activities THII_3872 SM00448 cheY-homologous receiver domain THII_3889 SM00052 Putative diguanylate phosphodiesterase THII_3889 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) THII_3889 SM00091 PAS domain THII_3889 SM00267 diguanylate cyclase THII_3891 SM00244 prohibitin homologues THII_3896 SM00986 Uracil DNA glycosylase superfamily THII_3896 SM00987 UreE urease accessory protein, C-terminal domain THII_3897 SM00917 LeuA allosteric (dimerisation) domain THII_3900 SM00849 Metallo-beta-lactamase superfamily THII_3902 SM00448 cheY-homologous receiver domain THII_3910 SM00382 ATPases associated with a variety of cellular activities THII_3911 SM00052 Putative diguanylate phosphodiesterase THII_3911 SM00091 PAS domain THII_3911 SM00267 diguanylate cyclase THII_3926 SM01207 THII_3926 THII_3933 SM00965 Secretin and TonB N terminus short domain THII_3934 SM00634 Bacterial Ig-like domain (group 1) THII_3940 SM00028 Tetratricopeptide repeats THII_3946 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). THII_3946 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain THII_3947 SM00644 THII_3947 THII_3964 SM00706 Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.