locus-tag class description J8380_00010 PF01668 SmpB protein J8380_00020 PF02391 MoaE protein J8380_00025 PF02597 ThiS family J8380_00030 PF00270 DEAD/DEAH box helicase J8380_00030 PF00271 Helicase conserved C-terminal domain J8380_00030 PF00570 HRDC domain J8380_00030 PF16124 RecQ zinc-binding J8380_00030 PF09382 RQC domain J8380_00050 PF09382 RQC domain J8380_00050 PF16124 RecQ zinc-binding J8380_00050 PF00270 DEAD/DEAH box helicase J8380_00050 PF00271 Helicase conserved C-terminal domain J8380_00050 PF00570 HRDC domain J8380_00070 PF00398 Ribosomal RNA adenine dimethylase J8380_00075 PF00691 OmpA family J8380_00075 PF00223 Photosystem I psaA/psaB protein J8380_00085 PF00691 OmpA family J8380_00090 PF03109 ABC1 family J8380_00095 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J8380_00120 PF01610 Transposase J8380_00120 PF13542 Helix-turn-helix domain of transposase family ISL3 J8380_00120 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 J8380_00125 PF01420 Type I restriction modification DNA specificity domain J8380_00135 PF04055 Radical SAM superfamily J8380_00135 PF06969 HemN C-terminal domain J8380_00145 PF03739 Lipopolysaccharide export system permease LptF/LptG J8380_00155 PF07690 Major Facilitator Superfamily J8380_00160 PF03372 Endonuclease/Exonuclease/phosphatase family J8380_00165 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J8380_00165 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J8380_00170 PF00202 Aminotransferase class-III J8380_00180 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J8380_00180 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J8380_00195 PF00733 Asparagine synthase J8380_00195 PF13537 Glutamine amidotransferase domain J8380_00215 PF08534 Redoxin J8380_00230 PF01966 HD domain J8380_00230 PF01743 Poly A polymerase head domain J8380_00230 PF12627 Probable RNA and SrmB- binding site of polymerase A J8380_00235 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_00240 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J8380_00240 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J8380_00260 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J8380_00265 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J8380_00265 PF00400 WD domain, G-beta repeat J8380_00275 PF13091 PLD-like domain J8380_00275 PF13396 Phospholipase_D-nuclease N-terminal J8380_00280 PF11700 Vacuole effluxer Atg22 like J8380_00295 PF00311 Phosphoenolpyruvate carboxylase J8380_00300 PF01521 Iron-sulphur cluster biosynthesis J8380_00315 PF02774 Semialdehyde dehydrogenase, dimerisation domain J8380_00315 PF01118 Semialdehyde dehydrogenase, NAD binding domain J8380_00325 PF03653 Uncharacterised protein family (UPF0093) J8380_00330 PF00293 NUDIX domain J8380_00340 PF17946 RecC C-terminal domain J8380_00365 PF00082 Subtilase family J8380_00365 PF04151 Bacterial pre-peptidase C-terminal domain J8380_00390 PF05193 Peptidase M16 inactive domain J8380_00395 PF00675 Insulinase (Peptidase family M16) J8380_00395 PF05193 Peptidase M16 inactive domain J8380_00400 PF00448 SRP54-type protein, GTPase domain J8380_00400 PF02881 SRP54-type protein, helical bundle domain J8380_00405 PF00005 ABC transporter J8380_00410 PF18075 FtsX extracellular domain J8380_00415 PF00005 ABC transporter J8380_00415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8380_00420 PF00528 Binding-protein-dependent transport system inner membrane component J8380_00420 PF12911 N-terminal TM domain of oligopeptide transport permease C J8380_00425 PF00528 Binding-protein-dependent transport system inner membrane component J8380_00430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8380_00460 PF10414 Sirohaem synthase dimerisation region J8380_00460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J8380_00460 PF14824 Sirohaem biosynthesis protein central J8380_00470 PF03960 ArsC family J8380_00475 PF07687 Peptidase dimerisation domain J8380_00475 PF01546 Peptidase family M20/M25/M40 J8380_00485 PF04453 LPS transport system D J8380_00485 PF03968 OstA-like protein J8380_00490 PF00639 PPIC-type PPIASE domain J8380_00490 PF09312 SurA N-terminal domain J8380_00495 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J8380_00500 PF02508 Rnf-Nqr subunit, membrane protein J8380_00505 PF04060 Putative Fe-S cluster J8380_00515 PF03116 NQR2, RnfD, RnfE family J8380_00520 PF04205 FMN-binding domain J8380_00525 PF02508 Rnf-Nqr subunit, membrane protein J8380_00530 PF00730 HhH-GPD superfamily base excision DNA repair protein J8380_00530 PF00633 Helix-hairpin-helix motif J8380_00530 PF10576 Iron-sulfur binding domain of endonuclease III J8380_00545 PF00459 Inositol monophosphatase family J8380_00565 PF13247 4Fe-4S dicluster domain J8380_00575 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J8380_00575 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_00590 PF04358 DsrC like protein J8380_00595 PF04077 DsrH like protein J8380_00600 PF02635 DsrE/DsrF-like family J8380_00605 PF02635 DsrE/DsrF-like family J8380_00610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J8380_00610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J8380_00615 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J8380_00615 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J8380_00650 PF13640 2OG-Fe(II) oxygenase superfamily J8380_00650 PF18331 PKHD-type hydroxylase C-terminal domain J8380_00660 PF01844 HNH endonuclease J8380_00665 PF11940 Domain of unknown function (DUF3458) Ig-like fold J8380_00665 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J8380_00665 PF01433 Peptidase family M1 domain J8380_00690 PF03309 Type III pantothenate kinase J8380_00695 PF02237 Biotin protein ligase C terminal domain J8380_00695 PF03099 Biotin/lipoate A/B protein ligase family J8380_00700 PF12832 MFS_1 like family J8380_00720 PF01264 Chorismate synthase J8380_00740 PF09308 LuxQ, periplasmic J8380_00740 PF00072 Response regulator receiver domain J8380_00740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_00740 PF00512 His Kinase A (phospho-acceptor) domain J8380_00745 PF00072 Response regulator receiver domain J8380_00745 PF00486 Transcriptional regulatory protein, C terminal J8380_00815 PF17961 Bacterial Ig domain J8380_00815 PF00746 LPXTG cell wall anchor motif J8380_00815 PF17210 SdrD B-like domain J8380_00815 PF10425 C-terminus of bacterial fibrinogen-binding adhesin J8380_00815 PF04650 YSIRK type signal peptide J8380_00820 PF17961 Bacterial Ig domain J8380_00820 PF00746 LPXTG cell wall anchor motif J8380_00820 PF17210 SdrD B-like domain J8380_00820 PF04650 YSIRK type signal peptide J8380_00875 PF10425 C-terminus of bacterial fibrinogen-binding adhesin J8380_00875 PF17210 SdrD B-like domain J8380_00875 PF00746 LPXTG cell wall anchor motif J8380_00875 PF17961 Bacterial Ig domain J8380_00875 PF04650 YSIRK type signal peptide J8380_00880 PF00746 LPXTG cell wall anchor motif J8380_00880 PF17210 SdrD B-like domain J8380_00880 PF10425 C-terminus of bacterial fibrinogen-binding adhesin J8380_00880 PF04650 YSIRK type signal peptide J8380_00880 PF17961 Bacterial Ig domain J8380_00895 PF04650 YSIRK type signal peptide J8380_00895 PF17210 SdrD B-like domain J8380_00895 PF00746 LPXTG cell wall anchor motif J8380_00895 PF17961 Bacterial Ig domain J8380_00895 PF10425 C-terminus of bacterial fibrinogen-binding adhesin J8380_00900 PF00746 LPXTG cell wall anchor motif J8380_00900 PF17210 SdrD B-like domain J8380_00900 PF04650 YSIRK type signal peptide J8380_00900 PF17961 Bacterial Ig domain J8380_00910 PF00085 Thioredoxin J8380_00915 PF02441 Flavoprotein J8380_00920 PF01225 Mur ligase family, catalytic domain J8380_00920 PF02875 Mur ligase family, glutamate ligase domain J8380_00920 PF08245 Mur ligase middle domain J8380_00925 PF00563 EAL domain J8380_00925 PF08448 PAS fold J8380_00925 PF00990 Diguanylate cyclase, GGDEF domain J8380_00930 PF01245 Ribosomal protein L19 J8380_00935 PF01746 tRNA (Guanine-1)-methyltransferase J8380_00940 PF05239 PRC-barrel domain J8380_00940 PF01782 RimM N-terminal domain J8380_00945 PF00886 Ribosomal protein S16 J8380_00950 PF06940 Domain of unknown function (DUF1287) J8380_00980 PF01578 Cytochrome C assembly protein J8380_00985 PF00571 CBS domain J8380_00985 PF03471 Transporter associated domain J8380_00985 PF01595 Cyclin M transmembrane N-terminal domain J8380_00990 PF18073 Rubredoxin metal binding domain J8380_00995 PF00270 DEAD/DEAH box helicase J8380_00995 PF00271 Helicase conserved C-terminal domain J8380_01005 PF00293 NUDIX domain J8380_01010 PF01960 ArgJ family J8380_01015 PF02810 SEC-C motif J8380_01015 PF07516 SecA Wing and Scaffold domain J8380_01015 PF01043 SecA preprotein cross-linking domain J8380_01015 PF07517 SecA DEAD-like domain J8380_01020 PF01464 Transglycosylase SLT domain J8380_01020 PF10145 Phage-related minor tail protein J8380_01020 PF01551 Peptidase family M23 J8380_01030 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J8380_01040 PF12327 FtsZ family, C-terminal domain J8380_01040 PF00091 Tubulin/FtsZ family, GTPase domain J8380_01045 PF02491 SHS2 domain inserted in FTSA J8380_01050 PF03799 Cell division protein FtsQ J8380_01050 PF08478 POTRA domain, FtsQ-type J8380_01055 PF01820 D-ala D-ala ligase N-terminus J8380_01055 PF07478 D-ala D-ala ligase C-terminus J8380_01060 PF02875 Mur ligase family, glutamate ligase domain J8380_01060 PF08245 Mur ligase middle domain J8380_01060 PF01225 Mur ligase family, catalytic domain J8380_01065 PF03033 Glycosyltransferase family 28 N-terminal domain J8380_01065 PF04101 Glycosyltransferase family 28 C-terminal domain J8380_01070 PF01098 Cell cycle protein J8380_01075 PF02875 Mur ligase family, glutamate ligase domain J8380_01075 PF08245 Mur ligase middle domain J8380_01080 PF00953 Glycosyl transferase family 4 J8380_01080 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J8380_01085 PF02875 Mur ligase family, glutamate ligase domain J8380_01085 PF01225 Mur ligase family, catalytic domain J8380_01085 PF08245 Mur ligase middle domain J8380_01090 PF01225 Mur ligase family, catalytic domain J8380_01090 PF02875 Mur ligase family, glutamate ligase domain J8380_01090 PF08245 Mur ligase middle domain J8380_01095 PF00905 Penicillin binding protein transpeptidase domain J8380_01095 PF03717 Penicillin-binding Protein dimerisation domain J8380_01105 PF01795 MraW methylase family J8380_01110 PF02381 MraZ protein, putative antitoxin-like J8380_01125 PF01964 Radical SAM ThiC family J8380_01125 PF13667 ThiC-associated domain J8380_01135 PF03553 Na+/H+ antiporter family J8380_01150 PF00069 Protein kinase domain J8380_01150 PF03793 PASTA domain J8380_01155 PF01250 Ribosomal protein S6 J8380_01160 PF01084 Ribosomal protein S18 J8380_01170 PF01281 Ribosomal protein L9, N-terminal domain J8380_01170 PF03948 Ribosomal protein L9, C-terminal domain J8380_01175 PF03796 DnaB-like helicase C terminal domain J8380_01175 PF00772 DnaB-like helicase N terminal domain J8380_01180 PF01168 Alanine racemase, N-terminal domain J8380_01180 PF00842 Alanine racemase, C-terminal domain J8380_01190 PF00672 HAMP domain J8380_01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_01190 PF00512 His Kinase A (phospho-acceptor) domain J8380_01195 PF00072 Response regulator receiver domain J8380_01195 PF00486 Transcriptional regulatory protein, C terminal J8380_01220 PF00140 Sigma-70 factor, region 1.2 J8380_01220 PF04542 Sigma-70 region 2 J8380_01220 PF04545 Sigma-70, region 4 J8380_01250 PF01242 6-pyruvoyl tetrahydropterin synthase J8380_01265 PF02929 Beta galactosidase small chain J8380_01265 PF16353 Domain of unknown function(DUF4981) J8380_01265 PF00703 Glycosyl hydrolases family 2 J8380_01265 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J8380_01265 PF02837 Glycosyl hydrolases family 2, sugar binding domain J8380_01275 PF00483 Nucleotidyl transferase J8380_01280 PF01740 STAS domain J8380_01290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8380_01290 PF01627 Hpt domain J8380_01290 PF00072 Response regulator receiver domain J8380_01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_01290 PF00672 HAMP domain J8380_01290 PF00512 His Kinase A (phospho-acceptor) domain J8380_01295 PF07228 Stage II sporulation protein E (SpoIIE) J8380_01295 PF13426 PAS domain J8380_01310 PF17149 Periplasmic sensor domain found in signal transduction proteins J8380_01310 PF00672 HAMP domain J8380_01310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_01310 PF00512 His Kinase A (phospho-acceptor) domain J8380_01310 PF01627 Hpt domain J8380_01310 PF00072 Response regulator receiver domain J8380_01330 PF00270 DEAD/DEAH box helicase J8380_01330 PF13749 Putative ATP-dependent DNA helicase recG C-terminal J8380_01330 PF17191 RecG wedge domain J8380_01360 PF10518 TAT (twin-arginine translocation) pathway signal sequence J8380_01360 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_01360 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding J8380_01375 PF12169 DNA polymerase III subunits gamma and tau domain III J8380_01375 PF12170 DNA polymerase III tau subunit V interacting with alpha J8380_01375 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J8380_01380 PF02575 YbaB/EbfC DNA-binding family J8380_01385 PF13662 Toprim domain J8380_01385 PF02132 RecR protein J8380_01390 PF01230 HIT domain J8380_01425 PF13635 Domain of unknown function (DUF4143) J8380_01425 PF13173 AAA domain J8380_01435 PF03480 Bacterial extracellular solute-binding protein, family 7 J8380_01455 PF01022 Bacterial regulatory protein, arsR family J8380_01465 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J8380_01465 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J8380_01470 PF03737 Aldolase/RraA J8380_01475 PF00463 Isocitrate lyase family J8380_01480 PF06039 Malate:quinone oxidoreductase (Mqo) J8380_01485 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J8380_01490 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J8380_01490 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J8380_01495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J8380_01495 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J8380_01510 PF01336 OB-fold nucleic acid binding domain J8380_01510 PF00152 tRNA synthetases class II (D, K and N) J8380_01525 PF00483 Nucleotidyl transferase J8380_01530 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J8380_01535 PF04321 RmlD substrate binding domain J8380_01540 PF16363 GDP-mannose 4,6 dehydratase J8380_01570 PF14602 Hexapeptide repeat of succinyl-transferase J8380_01570 PF12464 Maltose acetyltransferase J8380_01570 PF00132 Bacterial transferase hexapeptide (six repeats) J8380_01575 PF00535 Glycosyl transferase family 2 J8380_01575 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 J8380_01585 PF02397 Bacterial sugar transferase J8380_01600 PF13614 AAA domain J8380_01625 PF13495 Phage integrase, N-terminal SAM-like domain J8380_01625 PF00589 Phage integrase family J8380_01640 PF05973 Phage derived protein Gp49-like (DUF891) J8380_01655 PF01850 PIN domain J8380_01660 PF13286 Phosphohydrolase-associated domain J8380_01660 PF01966 HD domain J8380_01665 PF13180 PDZ domain J8380_01675 PF13627 Prokaryotic lipoprotein-attachment site J8380_01680 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J8380_01680 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J8380_01690 PF07075 Protein of unknown function (DUF1343) J8380_01695 PF13847 Methyltransferase domain J8380_01700 PF01026 TatD related DNase J8380_01705 PF04262 Glutamate-cysteine ligase J8380_01710 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) J8380_01715 PF02325 YGGT family J8380_01720 PF14748 Pyrroline-5-carboxylate reductase dimerisation J8380_01720 PF03807 NADP oxidoreductase coenzyme F420-dependent J8380_01730 PF00041 Fibronectin type III domain J8380_01730 PF02011 Glycosyl hydrolase family 48 J8380_01730 PF00553 Cellulose binding domain J8380_01735 PF00553 Cellulose binding domain J8380_01735 PF00041 Fibronectin type III domain J8380_01735 PF02011 Glycosyl hydrolase family 48 J8380_01750 PF04380 Membrane fusogenic activity J8380_01760 PF00543 Nitrogen regulatory protein P-II J8380_01765 PF00909 Ammonium Transporter Family J8380_01775 PF01078 Magnesium chelatase, subunit ChlI J8380_01775 PF13335 Magnesium chelatase, subunit ChlI C-terminal J8380_01780 PF00483 Nucleotidyl transferase J8380_01785 PF01636 Phosphotransferase enzyme family J8380_01800 PF03544 Gram-negative bacterial TonB protein C-terminal J8380_01805 PF02472 Biopolymer transport protein ExbD/TolR J8380_01810 PF01618 MotA/TolQ/ExbB proton channel family J8380_01815 PF01654 Cytochrome bd terminal oxidase subunit I J8380_01820 PF02322 Cytochrome bd terminal oxidase subunit II J8380_01825 PF08173 Membrane bound YbgT-like protein J8380_01830 PF00005 ABC transporter J8380_01830 PF00664 ABC transporter transmembrane region J8380_01835 PF00664 ABC transporter transmembrane region J8380_01835 PF00005 ABC transporter J8380_01860 PF00873 AcrB/AcrD/AcrF family J8380_01885 PF12705 PD-(D/E)XK nuclease superfamily J8380_01885 PF00580 UvrD/REP helicase N-terminal domain J8380_01885 PF13361 UvrD-like helicase C-terminal domain J8380_01930 PF01580 FtsK/SpoIIIE family J8380_01930 PF09397 Ftsk gamma domain J8380_01930 PF17854 FtsK alpha domain J8380_01950 PF01230 HIT domain J8380_01980 PF01230 HIT domain J8380_01990 PF11992 Domain of unknown function (DUF3488) J8380_01990 PF13559 Domain of unknown function (DUF4129) J8380_01990 PF01841 Transglutaminase-like superfamily J8380_02000 PF17863 AAA lid domain J8380_02000 PF07726 ATPase family associated with various cellular activities (AAA) J8380_02005 PF04751 Protein of unknown function (DUF615) J8380_02010 PF09820 Predicted AAA-ATPase J8380_02010 PF08011 PD-(D/E)XK nuclease superfamily J8380_02040 PF00005 ABC transporter J8380_02040 PF13732 Domain of unknown function (DUF4162) J8380_02045 PF02357 Transcription termination factor nusG J8380_02060 PF02673 Bacitracin resistance protein BacA J8380_02065 PF08351 Domain of unknown function (DUF1726) J8380_02065 PF13718 GNAT acetyltransferase 2 J8380_02065 PF05127 Helicase J8380_02065 PF17176 tRNA-binding domain J8380_02070 PF00543 Nitrogen regulatory protein P-II J8380_02075 PF02540 NAD synthase J8380_02075 PF00795 Carbon-nitrogen hydrolase J8380_02080 PF00512 His Kinase A (phospho-acceptor) domain J8380_02080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_02085 PF00158 Sigma-54 interaction domain J8380_02085 PF00072 Response regulator receiver domain J8380_02085 PF02954 Bacterial regulatory protein, Fis family J8380_02090 PF00005 ABC transporter J8380_02090 PF12848 ABC transporter J8380_02095 PF00072 Response regulator receiver domain J8380_02095 PF00486 Transcriptional regulatory protein, C terminal J8380_02110 PF05690 Thiazole biosynthesis protein ThiG J8380_02110 PF02597 ThiS family J8380_02115 PF05690 Thiazole biosynthesis protein ThiG J8380_02120 PF02390 Putative methyltransferase J8380_02130 PF00551 Formyl transferase J8380_02155 PF03334 Na+/H+ antiporter subunit J8380_02165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J8380_02170 PF00361 Proton-conducting membrane transporter J8380_02175 PF00361 Proton-conducting membrane transporter J8380_02185 PF13244 Domain of unknown function (DUF4040) J8380_02185 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J8380_02185 PF00361 Proton-conducting membrane transporter J8380_02185 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J8380_02190 PF00375 Sodium:dicarboxylate symporter family J8380_02195 PF01769 Divalent cation transporter J8380_02195 PF03448 MgtE intracellular N domain J8380_02195 PF00571 CBS domain J8380_02200 PF00924 Mechanosensitive ion channel J8380_02205 PF04055 Radical SAM superfamily J8380_02210 PF00534 Glycosyl transferases group 1 J8380_02210 PF13439 Glycosyltransferase Family 4 J8380_02215 PF05116 Sucrose-6F-phosphate phosphohydrolase J8380_02215 PF05166 YcgL domain J8380_02230 PF00128 Alpha amylase, catalytic domain J8380_02250 PF05134 Type II secretion system (T2SS), protein L J8380_02250 PF12693 GspL periplasmic domain J8380_02255 PF03934 Type II secretion system (T2SS), protein K J8380_02260 PF14718 Soluble lytic murein transglycosylase L domain J8380_02260 PF01464 Transglycosylase SLT domain J8380_02295 PF01274 Malate synthase J8380_02305 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding J8380_02305 PF18381 YcaO cyclodehydratase C-terminal domain J8380_02310 PF05016 ParE toxin of type II toxin-antitoxin system, parDE J8380_02315 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J8380_02330 PF08543 Phosphomethylpyrimidine kinase J8380_02335 PF00583 Acetyltransferase (GNAT) family J8380_02335 PF13380 CoA binding domain J8380_02335 PF13607 Succinyl-CoA ligase like flavodoxin domain J8380_02340 PF00850 Histone deacetylase domain J8380_02355 PF00271 Helicase conserved C-terminal domain J8380_02355 PF00270 DEAD/DEAH box helicase J8380_02370 PF13411 MerR HTH family regulatory protein J8380_02370 PF00145 C-5 cytosine-specific DNA methylase J8380_02375 PF02445 Quinolinate synthetase A protein J8380_02390 PF17764 3′ DNA-binding domain (3′BD) J8380_02390 PF18074 Primosomal protein N C-terminal domain J8380_02390 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J8380_02390 PF00270 DEAD/DEAH box helicase J8380_02390 PF00271 Helicase conserved C-terminal domain J8380_02395 PF02233 NAD(P) transhydrogenase beta subunit J8380_02400 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J8380_02405 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J8380_02405 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J8380_02410 PF00691 OmpA family J8380_02410 PF01389 OmpA-like transmembrane domain J8380_02415 PF03819 MazG nucleotide pyrophosphohydrolase domain J8380_02420 PF07499 RuvA, C-terminal domain J8380_02420 PF01330 RuvA N terminal domain J8380_02435 PF02091 Glycyl-tRNA synthetase alpha subunit J8380_02440 PF05746 DALR anticodon binding domain J8380_02440 PF02092 Glycyl-tRNA synthetase beta subunit J8380_02460 PF01266 FAD dependent oxidoreductase J8380_02500 PF01475 Ferric uptake regulator family J8380_02505 PF00227 Proteasome subunit J8380_02510 PF07724 AAA domain (Cdc48 subfamily) J8380_02510 PF10431 C-terminal, D2-small domain, of ClpB protein J8380_02510 PF00004 ATPase family associated with various cellular activities (AAA) J8380_02520 PF01926 50S ribosome-binding GTPase J8380_02525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J8380_02530 PF05140 ResB-like family J8380_02535 PF01578 Cytochrome C assembly protein J8380_02540 PF13462 Thioredoxin J8380_02545 PF03232 Ubiquinone biosynthesis protein COQ7 J8380_02550 PF03099 Biotin/lipoate A/B protein ligase family J8380_02575 PF13406 Transglycosylase SLT domain J8380_02595 PF00719 Inorganic pyrophosphatase J8380_02605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J8380_02625 PF02021 Uncharacterised protein family UPF0102 J8380_02630 PF13580 SIS domain J8380_02640 PF03099 Biotin/lipoate A/B protein ligase family J8380_02645 PF04359 Protein of unknown function (DUF493) J8380_02650 PF00768 D-alanyl-D-alanine carboxypeptidase J8380_02650 PF07943 Penicillin-binding protein 5, C-terminal domain J8380_02665 PF13406 Transglycosylase SLT domain J8380_02685 PF00719 Inorganic pyrophosphatase J8380_02695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J8380_02710 PF02021 Uncharacterised protein family UPF0102 J8380_02715 PF13580 SIS domain J8380_02720 PF00583 Acetyltransferase (GNAT) family J8380_02720 PF00696 Amino acid kinase family J8380_02755 PF06804 NlpB/DapX lipoprotein J8380_02760 PF00701 Dihydrodipicolinate synthetase family J8380_02775 PF09335 SNARE associated Golgi protein J8380_02780 PF03466 LysR substrate binding domain J8380_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_02785 PF17954 Quercetinase C-terminal cupin domain J8380_02785 PF02678 Pirin J8380_02790 PF01292 Prokaryotic cytochrome b561 J8380_02795 PF04264 YceI-like domain J8380_02800 PF00512 His Kinase A (phospho-acceptor) domain J8380_02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_02800 PF00989 PAS fold J8380_02805 PF03193 RsgA GTPase J8380_02815 PF01435 Peptidase family M48 J8380_02820 PF00929 Exonuclease J8380_02825 PF00753 Metallo-beta-lactamase superfamily J8380_02825 PF16123 Hydroxyacylglutathione hydrolase C-terminus J8380_02890 PF01053 Cys/Met metabolism PLP-dependent enzyme J8380_02895 PF02661 Fic/DOC family J8380_02910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J8380_02930 PF00005 ABC transporter J8380_02930 PF12848 ABC transporter J8380_02935 PF00043 Glutathione S-transferase, C-terminal domain J8380_02935 PF02798 Glutathione S-transferase, N-terminal domain J8380_02940 PF00571 CBS domain J8380_02945 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system J8380_02955 PF00849 RNA pseudouridylate synthase J8380_02955 PF04287 tRNA pseudouridine synthase C J8380_02965 PF00072 Response regulator receiver domain J8380_02965 PF00158 Sigma-54 interaction domain J8380_02965 PF02954 Bacterial regulatory protein, Fis family J8380_02970 PF00877 NlpC/P60 family J8380_02980 PF00849 RNA pseudouridylate synthase J8380_02985 PF02424 ApbE family J8380_03015 PF00873 AcrB/AcrD/AcrF family J8380_03025 PF11612 Type II secretion system (T2SS), protein J J8380_03025 PF07963 Prokaryotic N-terminal methylation motif J8380_03035 PF12019 Type II transport protein GspH J8380_03035 PF07963 Prokaryotic N-terminal methylation motif J8380_03040 PF08334 Type II secretion system (T2SS), protein G J8380_03040 PF07963 Prokaryotic N-terminal methylation motif J8380_03050 PF00156 Phosphoribosyl transferase domain J8380_03060 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J8380_03065 PF09905 DNA-binding protein VF530 J8380_03090 PF01425 Amidase J8380_03095 PF02637 GatB domain J8380_03095 PF02934 GatB/GatE catalytic domain J8380_03100 PF02686 Glu-tRNAGln amidotransferase C subunit J8380_03120 PF12697 Alpha/beta hydrolase family J8380_03125 PF02525 Flavodoxin-like fold J8380_03130 PF01430 Hsp33 protein J8380_03140 PF04085 rod shape-determining protein MreC J8380_03150 PF02649 Type I GTP cyclohydrolase folE2 J8380_03155 PF16200 C-terminal region of band_7 J8380_03155 PF01145 SPFH domain / Band 7 family J8380_03160 PF01957 NfeD-like C-terminal, partner-binding J8380_03165 PF01709 Transcriptional regulator J8380_03170 PF02075 Crossover junction endodeoxyribonuclease RuvC J8380_03185 PF03692 Putative zinc- or iron-chelating domain J8380_03190 PF01479 S4 domain J8380_03200 PF00485 Phosphoribulokinase / Uridine kinase family J8380_03215 PF13173 AAA domain J8380_03215 PF13635 Domain of unknown function (DUF4143) J8380_03225 PF01850 PIN domain J8380_03240 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J8380_03245 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J8380_03250 PF03480 Bacterial extracellular solute-binding protein, family 7 J8380_03255 PF02581 Thiamine monophosphate synthase J8380_03260 PF00202 Aminotransferase class-III J8380_03265 PF13180 PDZ domain J8380_03275 PF04452 RNA methyltransferase J8380_03280 PF02219 Methylenetetrahydrofolate reductase J8380_03285 PF05221 S-adenosyl-L-homocysteine hydrolase J8380_03285 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J8380_03290 PF02773 S-adenosylmethionine synthetase, C-terminal domain J8380_03290 PF02772 S-adenosylmethionine synthetase, central domain J8380_03290 PF00438 S-adenosylmethionine synthetase, N-terminal domain J8380_03295 PF00475 Imidazoleglycerol-phosphate dehydratase J8380_03310 PF00117 Glutamine amidotransferase class-I J8380_03325 PF15975 Flotillin J8380_03325 PF01145 SPFH domain / Band 7 family J8380_03330 PF02568 Thiamine biosynthesis protein (ThiI) J8380_03330 PF02926 THUMP domain J8380_03335 PF04172 LrgB-like family J8380_03340 PF03788 LrgA family J8380_03345 PF00149 Calcineurin-like phosphoesterase J8380_03355 PF00679 Elongation factor G C-terminus J8380_03355 PF14492 Elongation Factor G, domain II J8380_03355 PF03764 Elongation factor G, domain IV J8380_03355 PF00009 Elongation factor Tu GTP binding domain J8380_03355 PF03144 Elongation factor Tu domain 2 J8380_03360 PF10672 S-adenosylmethionine-dependent methyltransferase J8380_03360 PF17785 PUA-like domain J8380_03370 PF06123 Inner membrane protein CreD J8380_03375 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J8380_03375 PF01676 Metalloenzyme superfamily J8380_03385 PF00149 Calcineurin-like phosphoesterase J8380_03390 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system J8380_03395 PF01381 Helix-turn-helix J8380_03400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J8380_03400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J8380_03405 PF01979 Amidohydrolase family J8380_03410 PF00588 SpoU rRNA Methylase family J8380_03415 PF06574 FAD synthetase J8380_03415 PF01687 Riboflavin kinase J8380_03420 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J8380_03425 PF04542 Sigma-70 region 2 J8380_03425 PF08281 Sigma-70, region 4 J8380_03435 PF00082 Subtilase family J8380_03445 PF01218 Coproporphyrinogen III oxidase J8380_03455 PF00753 Metallo-beta-lactamase superfamily J8380_03465 PF03949 Malic enzyme, NAD binding domain J8380_03465 PF00390 Malic enzyme, N-terminal domain J8380_03465 PF01515 Phosphate acetyl/butaryl transferase J8380_03485 PF00171 Aldehyde dehydrogenase family J8380_03490 PF02600 Disulfide bond formation protein DsbB J8380_03520 PF03562 MltA specific insert domain J8380_03520 PF06725 3D domain J8380_03530 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J8380_03535 PF04055 Radical SAM superfamily J8380_03535 PF18693 TRAM domain J8380_03535 PF00919 Uncharacterized protein family UPF0004 J8380_03540 PF08240 Alcohol dehydrogenase GroES-like domain J8380_03540 PF00107 Zinc-binding dehydrogenase J8380_03550 PF01168 Alanine racemase, N-terminal domain J8380_03555 PF00437 Type II/IV secretion system protein J8380_03560 PF00437 Type II/IV secretion system protein J8380_03565 PF00437 Type II/IV secretion system protein J8380_03595 PF00561 alpha/beta hydrolase fold J8380_03600 PF02580 D-Tyr-tRNA(Tyr) deacylase J8380_03605 PF03190 Protein of unknown function, DUF255 J8380_03640 PF01722 BolA-like protein J8380_03645 PF03641 Possible lysine decarboxylase J8380_03655 PF01636 Phosphotransferase enzyme family J8380_03660 PF16916 Dimerisation domain of Zinc Transporter J8380_03660 PF01545 Cation efflux family J8380_03665 PF00120 Glutamine synthetase, catalytic domain J8380_03665 PF18318 Glutamine synthetase C-terminal domain J8380_03665 PF12437 Glutamine synthetase type III N terminal J8380_03670 PF00120 Glutamine synthetase, catalytic domain J8380_03670 PF03951 Glutamine synthetase, beta-Grasp domain J8380_03695 PF02954 Bacterial regulatory protein, Fis family J8380_03695 PF00072 Response regulator receiver domain J8380_03695 PF00158 Sigma-54 interaction domain J8380_03700 PF00989 PAS fold J8380_03700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_03700 PF00512 His Kinase A (phospho-acceptor) domain J8380_03710 PF00474 Sodium:solute symporter family J8380_03735 PF03330 Lytic transglycolase J8380_03735 PF05036 Sporulation related domain J8380_03745 PF04955 HupE / UreJ protein J8380_03750 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA J8380_03755 PF02492 CobW/HypB/UreG, nucleotide-binding domain J8380_03760 PF01455 HupF/HypC family J8380_03765 PF01924 Hydrogenase formation hypA family J8380_03770 PF00586 AIR synthase related protein, N-terminal domain J8380_03770 PF02769 AIR synthase related protein, C-terminal domain J8380_03775 PF02384 N-6 DNA Methylase J8380_03790 PF01610 Transposase J8380_03790 PF13542 Helix-turn-helix domain of transposase family ISL3 J8380_03790 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 J8380_03805 PF00072 Response regulator receiver domain J8380_03805 PF02895 Signal transducing histidine kinase, homodimeric domain J8380_03805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_03805 PF01627 Hpt domain J8380_03805 PF01584 CheW-like domain J8380_03815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8380_03815 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J8380_03825 PF00072 Response regulator receiver domain J8380_03830 PF00072 Response regulator receiver domain J8380_03835 PF00149 Calcineurin-like phosphoesterase J8380_03835 PF10518 TAT (twin-arginine translocation) pathway signal sequence J8380_03845 PF13686 DsrE/DsrF/DrsH-like family J8380_03850 PF00581 Rhodanese-like domain J8380_03855 PF01435 Peptidase family M48 J8380_03865 PF02222 ATP-grasp domain J8380_03865 PF01370 NAD dependent epimerase/dehydratase family J8380_03900 PF00970 Oxidoreductase FAD-binding domain J8380_03900 PF00111 2Fe-2S iron-sulfur cluster binding domain J8380_03900 PF00175 Oxidoreductase NAD-binding domain J8380_03915 PF03167 Uracil DNA glycosylase superfamily J8380_03925 PF01502 Phosphoribosyl-AMP cyclohydrolase J8380_03930 PF13417 Glutathione S-transferase, N-terminal domain J8380_03935 PF00595 PDZ domain J8380_03935 PF13180 PDZ domain J8380_03940 PF08340 Domain of unknown function (DUF1732) J8380_03940 PF03755 YicC-like family, N-terminal region J8380_03960 PF01139 tRNA-splicing ligase RtcB J8380_03965 PF03881 Fructosamine kinase J8380_03975 PF01987 Mitochondrial biogenesis AIM24 J8380_03990 PF06956 Regulator of RNA terminal phosphate cyclase J8380_03990 PF00158 Sigma-54 interaction domain J8380_04000 PF06832 Penicillin-Binding Protein C-terminus Family J8380_04000 PF00912 Transglycosylase J8380_04000 PF00905 Penicillin binding protein transpeptidase domain J8380_04005 PF01116 Fructose-bisphosphate aldolase class-II J8380_04010 PF02887 Pyruvate kinase, alpha/beta domain J8380_04010 PF00224 Pyruvate kinase, barrel domain J8380_04015 PF00162 Phosphoglycerate kinase J8380_04020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J8380_04020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J8380_04025 PF02779 Transketolase, pyrimidine binding domain J8380_04025 PF02780 Transketolase, C-terminal domain J8380_04025 PF00456 Transketolase, thiamine diphosphate binding domain J8380_04030 PF00977 Histidine biosynthesis protein J8380_04045 PF02661 Fic/DOC family J8380_04045 PF13784 Fic/DOC family N-terminal J8380_04055 PF10127 RNA repair pathway DNA polymerase beta family J8380_04070 PF11842 Domain of unknown function (DUF3362) J8380_04070 PF08497 Radical SAM N-terminal J8380_04070 PF04055 Radical SAM superfamily J8380_04075 PF01546 Peptidase family M20/M25/M40 J8380_04090 PF00155 Aminotransferase class I and II J8380_04130 PF00145 C-5 cytosine-specific DNA methylase J8380_04140 PF00990 Diguanylate cyclase, GGDEF domain J8380_04140 PF00360 Phytochrome region J8380_04140 PF00563 EAL domain J8380_04140 PF01590 GAF domain J8380_04150 PF01809 Putative membrane protein insertion efficiency factor J8380_04155 PF01131 DNA topoisomerase J8380_04155 PF13368 Topoisomerase C-terminal repeat J8380_04155 PF01751 Toprim domain J8380_04165 PF01520 N-acetylmuramoyl-L-alanine amidase J8380_04165 PF11741 AMIN domain J8380_04170 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J8380_04175 PF17783 CvfB-like winged helix domain J8380_04175 PF13509 S1 domain J8380_04180 PF00902 Sec-independent protein translocase protein (TatC) J8380_04185 PF02416 mttA/Hcf106 family J8380_04190 PF02416 mttA/Hcf106 family J8380_04195 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J8380_04200 PF00977 Histidine biosynthesis protein J8380_04205 PF01726 LexA DNA binding domain J8380_04205 PF00717 Peptidase S24-like J8380_04225 PF00294 pfkB family carbohydrate kinase J8380_04230 PF02481 DNA recombination-mediator protein A J8380_04230 PF17782 DprA winged helix domain J8380_04235 PF04361 Protein of unknown function (DUF494) J8380_04240 PF17284 Spermidine synthase tetramerisation domain J8380_04260 PF13657 HipA N-terminal domain J8380_04260 PF07804 HipA-like C-terminal domain J8380_04285 PF00476 DNA polymerase family A J8380_04285 PF01612 3'-5' exonuclease J8380_04285 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J8380_04285 PF01367 5'-3' exonuclease, C-terminal SAM fold J8380_04290 PF05724 Thiopurine S-methyltransferase (TPMT) J8380_04295 PF17820 PDZ domain J8380_04295 PF02163 Peptidase family M50 J8380_04315 PF01139 tRNA-splicing ligase RtcB J8380_04320 PF00708 Acylphosphatase J8380_04320 PF17788 HypF Kae1-like domain J8380_04320 PF01300 Telomere recombination J8380_04320 PF07503 HypF finger J8380_04325 PF00920 Dehydratase family J8380_04355 PF17810 Arginine decarboxylase helical bundle domain J8380_04355 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J8380_04355 PF17944 Arginine decarboxylase C-terminal helical extension J8380_04365 PF05166 YcgL domain J8380_04380 PF03372 Endonuclease/Exonuclease/phosphatase family J8380_04395 PF02463 RecF/RecN/SMC N terminal domain J8380_04405 PF11638 DnaA N-terminal domain J8380_04405 PF08299 Bacterial dnaA protein helix-turn-helix J8380_04405 PF00308 Bacterial dnaA protein J8380_04410 PF00468 Ribosomal protein L34 J8380_04415 PF00825 Ribonuclease P J8380_04420 PF14849 YidC periplasmic domain J8380_04420 PF02096 60Kd inner membrane protein J8380_04425 PF12631 MnmE helical domain J8380_04425 PF01926 50S ribosome-binding GTPase J8380_04425 PF10396 GTP-binding protein TrmE N-terminus J8380_04430 PF00589 Phage integrase family J8380_04430 PF13356 Arm DNA-binding domain J8380_04460 PF02384 N-6 DNA Methylase J8380_04460 PF12161 HsdM N-terminal domain J8380_04510 PF02796 Helix-turn-helix domain of resolvase J8380_04510 PF00239 Resolvase, N terminal domain J8380_04525 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J8380_04530 PF01467 Cytidylyltransferase-like J8380_04530 PF00293 NUDIX domain J8380_04540 PF01612 3'-5' exonuclease J8380_04540 PF00570 HRDC domain J8380_04545 PF01136 Peptidase family U32 J8380_04545 PF16325 Peptidase family U32 C-terminal domain J8380_04555 PF07152 YaeQ protein J8380_04560 PF18284 DNA methylase N-terminal domain J8380_04560 PF00145 C-5 cytosine-specific DNA methylase J8380_04570 PF04976 DMSO reductase anchor subunit (DmsC) J8380_04575 PF13247 4Fe-4S dicluster domain J8380_04575 PF12800 4Fe-4S binding domain J8380_04580 PF00384 Molybdopterin oxidoreductase J8380_04580 PF01568 Molydopterin dinucleotide binding domain J8380_04580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J8380_04585 PF13476 AAA domain J8380_04590 PF00149 Calcineurin-like phosphoesterase J8380_04590 PF12320 Type 5 capsule protein repressor C-terminal domain J8380_04600 PF07995 Glucose / Sorbosone dehydrogenase J8380_04610 PF12848 ABC transporter J8380_04610 PF00005 ABC transporter J8380_04610 PF16326 ABC transporter C-terminal domain J8380_04615 PF08331 Domain of unknown function (DUF1730) J8380_04625 PF01243 Pyridoxamine 5'-phosphate oxidase J8380_04625 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J8380_04635 PF02570 Precorrin-8X methylmutase J8380_04640 PF01026 TatD related DNase J8380_04655 PF13488 Glycine zipper J8380_04655 PF00691 OmpA family J8380_04670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8380_04670 PF08447 PAS fold J8380_04720 PF01040 UbiA prenyltransferase family J8380_04725 PF07977 FabA-like domain J8380_04735 PF01197 Ribosomal protein L31 J8380_04740 PF01435 Peptidase family M48 J8380_04740 PF13181 Tetratricopeptide repeat J8380_04745 PF03949 Malic enzyme, NAD binding domain J8380_04745 PF00390 Malic enzyme, N-terminal domain J8380_04760 PF02602 Uroporphyrinogen-III synthase HemD J8380_04765 PF03900 Porphobilinogen deaminase, C-terminal domain J8380_04765 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J8380_04770 PF07715 TonB-dependent Receptor Plug Domain J8380_04770 PF00593 TonB dependent receptor J8380_04780 PF11849 Domain of unknown function (DUF3369) J8380_04820 PF03400 IS1 transposase J8380_04825 PF02702 Osmosensitive K+ channel His kinase sensor domain J8380_04825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_04825 PF13493 Domain of unknown function (DUF4118) J8380_04825 PF00512 His Kinase A (phospho-acceptor) domain J8380_04830 PF00486 Transcriptional regulatory protein, C terminal J8380_04830 PF00072 Response regulator receiver domain J8380_04835 PF02386 Cation transport protein J8380_04840 PF02080 TrkA-C domain J8380_04840 PF02254 TrkA-N domain J8380_04845 PF02386 Cation transport protein J8380_04850 PF00753 Metallo-beta-lactamase superfamily J8380_04850 PF00581 Rhodanese-like domain J8380_04855 PF00581 Rhodanese-like domain J8380_04860 PF00083 Sugar (and other) transporter J8380_04865 PF07726 ATPase family associated with various cellular activities (AAA) J8380_04865 PF17863 AAA lid domain J8380_04875 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J8380_04885 PF13657 HipA N-terminal domain J8380_04885 PF07804 HipA-like C-terminal domain J8380_04900 PF00092 von Willebrand factor type A domain J8380_04905 PF13519 von Willebrand factor type A domain J8380_04960 PF02384 N-6 DNA Methylase J8380_04960 PF12161 HsdM N-terminal domain J8380_04975 PF11867 Domain of unknown function (DUF3387) J8380_04975 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J8380_04975 PF18766 SWI2/SNF2 ATPase J8380_04985 PF03773 Predicted permease J8380_05000 PF02463 RecF/RecN/SMC N terminal domain J8380_05050 PF03595 Voltage-dependent anion channel J8380_05060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_05060 PF03466 LysR substrate binding domain J8380_05065 PF00005 ABC transporter J8380_05065 PF02687 FtsX-like permease family J8380_05065 PF12704 MacB-like periplasmic core domain J8380_05085 PF00440 Bacterial regulatory proteins, tetR family J8380_05090 PF03595 Voltage-dependent anion channel J8380_05100 PF00916 Sulfate permease family J8380_05100 PF01740 STAS domain J8380_05110 PF04542 Sigma-70 region 2 J8380_05110 PF04545 Sigma-70, region 4 J8380_05130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J8380_05130 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_05130 PF00403 Heavy-metal-associated domain J8380_05150 PF06250 YhcG PDDEXK nuclease domain J8380_05150 PF17761 DUF1016 N-terminal domain J8380_05155 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J8380_05155 PF18766 SWI2/SNF2 ATPase J8380_05155 PF11867 Domain of unknown function (DUF3387) J8380_05165 PF02384 N-6 DNA Methylase J8380_05180 PF01206 Sulfurtransferase TusA J8380_05190 PF00440 Bacterial regulatory proteins, tetR family J8380_05190 PF16925 Tetracyclin repressor-like, C-terminal domain J8380_05205 PF05114 Protein of unknown function (DUF692) J8380_05215 PF00158 Sigma-54 interaction domain J8380_05215 PF00072 Response regulator receiver domain J8380_05215 PF02954 Bacterial regulatory protein, Fis family J8380_05250 PF05114 Protein of unknown function (DUF692) J8380_05260 PF03831 PhnA domain J8380_05260 PF08274 PhnA Zinc-Ribbon J8380_05270 PF07664 Ferrous iron transport protein B C terminus J8380_05270 PF02421 Ferrous iron transport protein B J8380_05270 PF07670 Nucleoside recognition J8380_05285 PF02954 Bacterial regulatory protein, Fis family J8380_05285 PF00072 Response regulator receiver domain J8380_05285 PF00158 Sigma-54 interaction domain J8380_05290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_05290 PF02743 Cache domain J8380_05290 PF00512 His Kinase A (phospho-acceptor) domain J8380_05295 PF01750 Hydrogenase maturation protease J8380_05305 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J8380_05305 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal J8380_05325 PF00374 Nickel-dependent hydrogenase J8380_05350 PF03781 Sulfatase-modifying factor enzyme 1 J8380_05350 PF00069 Protein kinase domain J8380_05365 PF17761 DUF1016 N-terminal domain J8380_05365 PF06250 YhcG PDDEXK nuclease domain J8380_05370 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J8380_05370 PF00400 WD domain, G-beta repeat J8380_05385 PF05661 Protein of unknown function (DUF808) J8380_05390 PF02541 Ppx/GppA phosphatase family J8380_05395 PF01042 Endoribonuclease L-PSP J8380_05400 PF13291 ACT domain J8380_05400 PF04607 Region found in RelA / SpoT proteins J8380_05400 PF02824 TGS domain J8380_05405 PF01192 RNA polymerase Rpb6 J8380_05425 PF00266 Aminotransferase class-V J8380_05430 PF10017 Histidine-specific methyltransferase, SAM-dependent J8380_05435 PF12867 DinB superfamily J8380_05435 PF03781 Sulfatase-modifying factor enzyme 1 J8380_05455 PF00384 Molybdopterin oxidoreductase J8380_05455 PF01568 Molydopterin dinucleotide binding domain J8380_05465 PF00512 His Kinase A (phospho-acceptor) domain J8380_05465 PF18698 Histidine kinase sensor domain J8380_05465 PF00989 PAS fold J8380_05465 PF00672 HAMP domain J8380_05465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_05470 PF00072 Response regulator receiver domain J8380_05470 PF00486 Transcriptional regulatory protein, C terminal J8380_05475 PF00929 Exonuclease J8380_05500 PF02272 DHHA1 domain J8380_05500 PF01411 tRNA synthetases class II (A) J8380_05500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J8380_05515 PF02926 THUMP domain J8380_05515 PF10672 S-adenosylmethionine-dependent methyltransferase J8380_05515 PF01170 Putative RNA methylase family UPF0020 J8380_05525 PF02843 Phosphoribosylglycinamide synthetase, C domain J8380_05525 PF02844 Phosphoribosylglycinamide synthetase, N domain J8380_05525 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J8380_05535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8380_05540 PF00342 Phosphoglucose isomerase J8380_05545 PF02685 Glucokinase J8380_05550 PF00483 Nucleotidyl transferase J8380_05560 PF02446 4-alpha-glucanotransferase J8380_05570 PF00534 Glycosyl transferases group 1 J8380_05570 PF08323 Starch synthase catalytic domain J8380_05575 PF00343 Carbohydrate phosphorylase J8380_05585 PF00753 Metallo-beta-lactamase superfamily J8380_05590 PF14306 PUA-like domain J8380_05590 PF01747 ATP-sulfurylase J8380_05600 PF00890 FAD binding domain J8380_05605 PF05191 Adenylate kinase, active site lid J8380_05610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8380_05620 PF00365 Phosphofructokinase J8380_05630 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) J8380_05650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8380_05655 PF02754 Cysteine-rich domain J8380_05670 PF01593 Flavin containing amine oxidoreductase J8380_05685 PF01266 FAD dependent oxidoreductase J8380_05685 PF00355 Rieske [2Fe-2S] domain J8380_05720 PF01557 Fumarylacetoacetate (FAA) hydrolase family J8380_05725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J8380_05725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J8380_05740 PF05685 Putative restriction endonuclease J8380_05745 PF02654 Cobalamin-5-phosphate synthase J8380_05750 PF13657 HipA N-terminal domain J8380_05750 PF07804 HipA-like C-terminal domain J8380_05760 PF02277 Phosphoribosyltransferase J8380_05765 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J8380_05770 PF01207 Dihydrouridine synthase (Dus) J8380_05775 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J8380_05775 PF12557 Cob(I)alamin adenosyltransferase N terminal J8380_05780 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J8380_05790 PF01142 tRNA pseudouridine synthase D (TruD) J8380_05795 PF00155 Aminotransferase class I and II J8380_05800 PF01206 Sulfurtransferase TusA J8380_05805 PF01678 Diaminopimelate epimerase J8380_05815 PF00589 Phage integrase family J8380_05815 PF02899 Phage integrase, N-terminal SAM-like domain J8380_05845 PF04055 Radical SAM superfamily J8380_05860 PF08281 Sigma-70, region 4 J8380_05860 PF04542 Sigma-70 region 2 J8380_05930 PF01476 LysM domain J8380_05935 PF01327 Polypeptide deformylase J8380_05940 PF00551 Formyl transferase J8380_05940 PF02911 Formyl transferase, C-terminal domain J8380_05945 PF01189 16S rRNA methyltransferase RsmB/F J8380_05945 PF01029 NusB family J8380_05955 PF00989 PAS fold J8380_05955 PF00512 His Kinase A (phospho-acceptor) domain J8380_05955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_05955 PF00672 HAMP domain J8380_05960 PF00072 Response regulator receiver domain J8380_05960 PF00158 Sigma-54 interaction domain J8380_05960 PF02954 Bacterial regulatory protein, Fis family J8380_05965 PF02080 TrkA-C domain J8380_05965 PF02254 TrkA-N domain J8380_05970 PF02386 Cation transport protein J8380_05980 PF02401 LytB protein J8380_05990 PF00664 ABC transporter transmembrane region J8380_05990 PF00005 ABC transporter J8380_05995 PF11412 Disulphide bond corrector protein DsbC J8380_05995 PF02683 Cytochrome C biogenesis protein transmembrane region J8380_06000 PF02683 Cytochrome C biogenesis protein transmembrane region J8380_06000 PF11412 Disulphide bond corrector protein DsbC J8380_06010 PF03477 ATP cone domain J8380_06010 PF02867 Ribonucleotide reductase, barrel domain J8380_06010 PF00317 Ribonucleotide reductase, all-alpha domain J8380_06015 PF01555 DNA methylase J8380_06025 PF00268 Ribonucleotide reductase, small chain J8380_06030 PF02321 Outer membrane efflux protein J8380_06070 PF00535 Glycosyl transferase family 2 J8380_06080 PF04349 Periplasmic glucan biosynthesis protein, MdoG J8380_06090 PF01209 ubiE/COQ5 methyltransferase family J8380_06105 PF01478 Type IV leader peptidase family J8380_06105 PF06750 Bacterial Peptidase A24 N-terminal domain J8380_06110 PF00482 Type II secretion system (T2SS), protein F J8380_06115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J8380_06115 PF00437 Type II/IV secretion system protein J8380_06130 PF00114 Pilin (bacterial filament) J8380_06130 PF07963 Prokaryotic N-terminal methylation motif J8380_06135 PF01171 PP-loop family J8380_06140 PF16177 Acetyl-coenzyme A synthetase N-terminus J8380_06140 PF13193 AMP-binding enzyme C-terminal domain J8380_06140 PF00501 AMP-binding enzyme J8380_06185 PF02108 Flagellar assembly protein FliH J8380_06195 PF02874 ATP synthase alpha/beta family, beta-barrel domain J8380_06195 PF18269 T3SS EscN ATPase C-terminal domain J8380_06195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8380_06200 PF00771 FHIPEP family J8380_06210 PF01312 FlhB HrpN YscU SpaS Family J8380_06215 PF01311 Bacterial export proteins, family 1 J8380_06220 PF01313 Bacterial export proteins, family 3 J8380_06225 PF00813 FliP family J8380_06230 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J8380_06240 PF00263 Bacterial type II and III secretion system protein J8380_06240 PF03958 Bacterial type II/III secretion system short domain J8380_06270 PF01514 Secretory protein of YscJ/FliF family J8380_06275 PF03279 Bacterial lipid A biosynthesis acyltransferase J8380_06280 PF02464 Competence-damaged protein J8380_06280 PF18146 Damage-inducible protein CinA KH domain J8380_06280 PF00994 Probable molybdopterin binding domain J8380_06285 PF00762 Ferrochelatase J8380_06290 PF00459 Inositol monophosphatase family J8380_06295 PF01177 Asp/Glu/Hydantoin racemase J8380_06300 PF00849 RNA pseudouridylate synthase J8380_06300 PF01479 S4 domain J8380_06315 PF00892 EamA-like transporter family J8380_06320 PF07669 Eco57I restriction-modification methylase J8380_06330 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J8380_06340 PF02146 Sir2 family J8380_06350 PF00355 Rieske [2Fe-2S] domain J8380_06355 PF00196 Bacterial regulatory proteins, luxR family J8380_06355 PF00072 Response regulator receiver domain J8380_06360 PF07730 Histidine kinase J8380_06370 PF06940 Domain of unknown function (DUF1287) J8380_06380 PF01979 Amidohydrolase family J8380_06450 PF01565 FAD binding domain J8380_06450 PF09330 D-lactate dehydrogenase, membrane binding J8380_06455 PF02652 L-lactate permease J8380_06460 PF07729 FCD domain J8380_06460 PF00392 Bacterial regulatory proteins, gntR family J8380_06465 PF02754 Cysteine-rich domain J8380_06470 PF02589 LUD domain J8380_06470 PF11870 Domain of unknown function (DUF3390) J8380_06470 PF13183 4Fe-4S dicluster domain J8380_06475 PF02589 LUD domain J8380_06485 PF02463 RecF/RecN/SMC N terminal domain J8380_06490 PF13614 AAA domain J8380_06500 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8380_06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_06500 PF00512 His Kinase A (phospho-acceptor) domain J8380_06500 PF01627 Hpt domain J8380_06500 PF00072 Response regulator receiver domain J8380_06500 PF00672 HAMP domain J8380_06510 PF01138 3' exoribonuclease family, domain 1 J8380_06510 PF03725 3' exoribonuclease family, domain 2 J8380_06515 PF01725 Ham1 family J8380_06535 PF03144 Elongation factor Tu domain 2 J8380_06535 PF00009 Elongation factor Tu GTP binding domain J8380_06535 PF00679 Elongation factor G C-terminus J8380_06540 PF05175 Methyltransferase small domain J8380_06545 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J8380_06545 PF02222 ATP-grasp domain J8380_06560 PF00731 AIR carboxylase J8380_06565 PF01259 SAICAR synthetase J8380_06570 PF01370 NAD dependent epimerase/dehydratase family J8380_06575 PF11356 Type II secretion system protein C J8380_06585 PF01734 Patatin-like phospholipase J8380_06620 PF03473 MOSC domain J8380_06620 PF00111 2Fe-2S iron-sulfur cluster binding domain J8380_06620 PF03476 MOSC N-terminal beta barrel domain J8380_06635 PF04073 Aminoacyl-tRNA editing domain J8380_06710 PF17864 RuvB AAA lid domain J8380_06710 PF05491 RuvB C-terminal winged helix domain J8380_06710 PF05496 Holliday junction DNA helicase RuvB P-loop domain J8380_06715 PF03061 Thioesterase superfamily J8380_06720 PF01618 MotA/TolQ/ExbB proton channel family J8380_06725 PF02472 Biopolymer transport protein ExbD/TolR J8380_06735 PF07676 WD40-like Beta Propeller Repeat J8380_06735 PF04052 TolB amino-terminal domain J8380_06740 PF00691 OmpA family J8380_06745 PF13174 Tetratricopeptide repeat J8380_06745 PF16331 TolA binding protein trimerisation J8380_06750 PF04055 Radical SAM superfamily J8380_06785 PF13173 AAA domain J8380_06785 PF13635 Domain of unknown function (DUF4143) J8380_06790 PF06508 Queuosine biosynthesis protein QueC J8380_06795 PF01625 Peptide methionine sulfoxide reductase J8380_06800 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J8380_06805 PF03352 Methyladenine glycosylase J8380_06805 PF13673 Acetyltransferase (GNAT) domain J8380_06805 PF00958 GMP synthase C terminal domain J8380_06805 PF00117 Glutamine amidotransferase class-I J8380_06805 PF13302 Acetyltransferase (GNAT) domain J8380_06830 PF13532 2OG-Fe(II) oxygenase superfamily J8380_06850 PF04298 Putative neutral zinc metallopeptidase J8380_06860 PF00459 Inositol monophosphatase family J8380_06880 PF00005 ABC transporter J8380_06880 PF00664 ABC transporter transmembrane region J8380_06885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J8380_06915 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J8380_06915 PF04408 Helicase associated domain (HA2) J8380_06915 PF00271 Helicase conserved C-terminal domain J8380_06915 PF11898 Domain of unknown function (DUF3418) J8380_06915 PF00270 DEAD/DEAH box helicase J8380_06920 PF05685 Putative restriction endonuclease J8380_06940 PF00580 UvrD/REP helicase N-terminal domain J8380_06940 PF13361 UvrD-like helicase C-terminal domain J8380_06950 PF00462 Glutaredoxin J8380_06950 PF08534 Redoxin J8380_06955 PF13291 ACT domain J8380_06955 PF04607 Region found in RelA / SpoT proteins J8380_06955 PF02824 TGS domain J8380_07000 PF02630 SCO1/SenC J8380_07010 PF02622 Uncharacterized ACR, COG1678 J8380_07015 PF03652 Holliday junction resolvase J8380_07020 PF00156 Phosphoribosyl transferase domain J8380_07025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_07025 PF00512 His Kinase A (phospho-acceptor) domain J8380_07025 PF00672 HAMP domain J8380_07045 PF00005 ABC transporter J8380_07055 PF01850 PIN domain J8380_07065 PF02384 N-6 DNA Methylase J8380_07065 PF12161 HsdM N-terminal domain J8380_07080 PF02661 Fic/DOC family J8380_07085 PF17191 RecG wedge domain J8380_07085 PF13749 Putative ATP-dependent DNA helicase recG C-terminal J8380_07085 PF00270 DEAD/DEAH box helicase J8380_07100 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J8380_07100 PF18766 SWI2/SNF2 ATPase J8380_07100 PF12008 Type I restriction and modification enzyme - subunit R C terminal J8380_07115 PF01464 Transglycosylase SLT domain J8380_07115 PF10145 Phage-related minor tail protein J8380_07115 PF01551 Peptidase family M23 J8380_07120 PF03976 Polyphosphate kinase 2 (PPK2) J8380_07125 PF00486 Transcriptional regulatory protein, C terminal J8380_07125 PF00072 Response regulator receiver domain J8380_07165 PF08335 GlnD PII-uridylyltransferase J8380_07165 PF03710 Glutamate-ammonia ligase adenylyltransferase J8380_07170 PF13180 PDZ domain J8380_07170 PF17820 PDZ domain J8380_07180 PF01207 Dihydrouridine synthase (Dus) J8380_07190 PF06827 Zinc finger found in FPG and IleRS J8380_07190 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J8380_07190 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J8380_07200 PF01743 Poly A polymerase head domain J8380_07200 PF00571 CBS domain J8380_07210 PF00970 Oxidoreductase FAD-binding domain J8380_07210 PF00111 2Fe-2S iron-sulfur cluster binding domain J8380_07210 PF00175 Oxidoreductase NAD-binding domain J8380_07215 PF02508 Rnf-Nqr subunit, membrane protein J8380_07220 PF02508 Rnf-Nqr subunit, membrane protein J8380_07225 PF04205 FMN-binding domain J8380_07230 PF03116 NQR2, RnfD, RnfE family J8380_07235 PF11973 NQRA C-terminal domain J8380_07235 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J8380_07265 PF00211 Adenylate and Guanylate cyclase catalytic domain J8380_07270 PF13545 Crp-like helix-turn-helix domain J8380_07270 PF00027 Cyclic nucleotide-binding domain J8380_07285 PF01297 Zinc-uptake complex component A periplasmic J8380_07290 PF00005 ABC transporter J8380_07295 PF00950 ABC 3 transport family J8380_07300 PF01467 Cytidylyltransferase-like J8380_07305 PF00037 4Fe-4S binding domain J8380_07315 PF02698 DUF218 domain J8380_07345 PF01980 tRNA-methyltransferase O J8380_07345 PF18389 TrmO C-terminal domain J8380_07350 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J8380_07355 PF17243 POTRA domain TamA domain 1 J8380_07355 PF01103 Surface antigen J8380_07360 PF04357 TamB, inner membrane protein subunit of TAM complex J8380_07380 PF00009 Elongation factor Tu GTP binding domain J8380_07380 PF03144 Elongation factor Tu domain 2 J8380_07380 PF03143 Elongation factor Tu C-terminal domain J8380_07390 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J8380_07395 PF00467 KOW motif J8380_07395 PF02357 Transcription termination factor nusG J8380_07400 PF03946 Ribosomal protein L11, N-terminal domain J8380_07400 PF00298 Ribosomal protein L11, RNA binding domain J8380_07405 PF00687 Ribosomal protein L1p/L10e family J8380_07410 PF00466 Ribosomal protein L10 J8380_07415 PF00542 Ribosomal protein L7/L12 C-terminal domain J8380_07415 PF16320 Ribosomal protein L7/L12 dimerisation domain J8380_07420 PF00562 RNA polymerase Rpb2, domain 6 J8380_07420 PF04563 RNA polymerase beta subunit J8380_07420 PF04561 RNA polymerase Rpb2, domain 2 J8380_07420 PF04565 RNA polymerase Rpb2, domain 3 J8380_07420 PF10385 RNA polymerase beta subunit external 1 domain J8380_07420 PF04560 RNA polymerase Rpb2, domain 7 J8380_07425 PF05000 RNA polymerase Rpb1, domain 4 J8380_07425 PF04998 RNA polymerase Rpb1, domain 5 J8380_07425 PF04983 RNA polymerase Rpb1, domain 3 J8380_07425 PF00623 RNA polymerase Rpb1, domain 2 J8380_07425 PF04997 RNA polymerase Rpb1, domain 1 J8380_07430 PF00164 Ribosomal protein S12/S23 J8380_07435 PF00177 Ribosomal protein S7p/S5e J8380_07440 PF03144 Elongation factor Tu domain 2 J8380_07440 PF00009 Elongation factor Tu GTP binding domain J8380_07440 PF03764 Elongation factor G, domain IV J8380_07440 PF00679 Elongation factor G C-terminus J8380_07440 PF14492 Elongation Factor G, domain II J8380_07445 PF00009 Elongation factor Tu GTP binding domain J8380_07445 PF03144 Elongation factor Tu domain 2 J8380_07445 PF03143 Elongation factor Tu C-terminal domain J8380_07450 PF00338 Ribosomal protein S10p/S20e J8380_07455 PF00297 Ribosomal protein L3 J8380_07460 PF00573 Ribosomal protein L4/L1 family J8380_07465 PF00276 Ribosomal protein L23 J8380_07470 PF00181 Ribosomal Proteins L2, RNA binding domain J8380_07470 PF03947 Ribosomal Proteins L2, C-terminal domain J8380_07475 PF00203 Ribosomal protein S19 J8380_07480 PF00237 Ribosomal protein L22p/L17e J8380_07485 PF07650 KH domain J8380_07485 PF00189 Ribosomal protein S3, C-terminal domain J8380_07490 PF00252 Ribosomal protein L16p/L10e J8380_07495 PF00831 Ribosomal L29 protein J8380_07500 PF00366 Ribosomal protein S17 J8380_07505 PF00238 Ribosomal protein L14p/L23e J8380_07510 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J8380_07510 PF00467 KOW motif J8380_07515 PF00673 ribosomal L5P family C-terminus J8380_07515 PF00281 Ribosomal protein L5 J8380_07520 PF00253 Ribosomal protein S14p/S29e J8380_07525 PF00410 Ribosomal protein S8 J8380_07530 PF00347 Ribosomal protein L6 J8380_07535 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J8380_07540 PF00333 Ribosomal protein S5, N-terminal domain J8380_07540 PF03719 Ribosomal protein S5, C-terminal domain J8380_07545 PF00327 Ribosomal protein L30p/L7e J8380_07550 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J8380_07555 PF00344 SecY translocase J8380_07560 PF00444 Ribosomal protein L36 J8380_07565 PF00416 Ribosomal protein S13/S18 J8380_07570 PF00411 Ribosomal protein S11 J8380_07575 PF00163 Ribosomal protein S4/S9 N-terminal domain J8380_07575 PF01479 S4 domain J8380_07580 PF01000 RNA polymerase Rpb3/RpoA insert domain J8380_07580 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J8380_07580 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J8380_07585 PF01196 Ribosomal protein L17 J8380_07595 PF06968 Biotin and Thiamin Synthesis associated domain J8380_07595 PF04055 Radical SAM superfamily J8380_07600 PF01134 Glucose inhibited division protein A J8380_07600 PF13932 GidA associated domain J8380_07605 PF02527 rRNA small subunit methyltransferase G J8380_07610 PF13614 AAA domain J8380_07615 PF02195 ParB-like nuclease domain J8380_07615 PF17762 HTH domain found in ParB protein J8380_07620 PF01649 Ribosomal protein S20 J8380_07625 PF01121 Dephospho-CoA kinase J8380_07630 PF07072 Cell division protein J8380_07645 PF00596 Class II Aldolase and Adducin N-terminal domain J8380_07660 PF00132 Bacterial transferase hexapeptide (six repeats) J8380_07660 PF14602 Hexapeptide repeat of succinyl-transferase J8380_07660 PF12804 MobA-like NTP transferase domain J8380_07665 PF01380 SIS domain J8380_07670 PF00916 Sulfate permease family J8380_07670 PF01740 STAS domain J8380_07680 PF01967 MoaC family J8380_07685 PF03572 Peptidase family S41 J8380_07685 PF13180 PDZ domain J8380_07690 PF01551 Peptidase family M23 J8380_07700 PF12368 Rhodanase C-terminal J8380_07700 PF17773 UPF0176 acylphosphatase like domain J8380_07700 PF00581 Rhodanese-like domain J8380_07705 PF00462 Glutaredoxin J8380_07710 PF02556 Preprotein translocase subunit SecB J8380_07715 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J8380_07715 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J8380_07720 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J8380_07720 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J8380_07730 PF02566 OsmC-like protein J8380_07735 PF02675 S-adenosylmethionine decarboxylase J8380_07740 PF00877 NlpC/P60 family J8380_07755 PF02915 Rubrerythrin J8380_07770 PF00348 Polyprenyl synthetase J8380_07780 PF01016 Ribosomal L27 protein J8380_07790 PF00696 Amino acid kinase family J8380_07790 PF01472 PUA domain J8380_07795 PF04379 ApaG domain J8380_07820 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J8380_07845 PF00085 Thioredoxin J8380_07850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8380_07850 PF07498 Rho termination factor, N-terminal domain J8380_07850 PF07497 Rho termination factor, RNA-binding domain J8380_07855 PF16360 GTP-binding GTPase Middle Region J8380_07855 PF13167 GTP-binding GTPase N-terminal J8380_07855 PF01926 50S ribosome-binding GTPase J8380_07860 PF17209 Hfq protein J8380_07870 PF08676 MutL C terminal dimerisation domain J8380_07870 PF01119 DNA mismatch repair protein, C-terminal domain J8380_07875 PF13180 PDZ domain J8380_07880 PF06827 Zinc finger found in FPG and IleRS J8380_07880 PF00133 tRNA synthetases class I (I, L, M and V) J8380_07880 PF08264 Anticodon-binding domain of tRNA J8380_07890 PF00206 Lyase J8380_07890 PF14698 Argininosuccinate lyase C-terminal J8380_07895 PF07694 5TMR of 5TMR-LYT J8380_07895 PF06580 Histidine kinase J8380_07895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_07900 PF00072 Response regulator receiver domain J8380_07900 PF04397 LytTr DNA-binding domain J8380_07915 PF00119 ATP synthase A chain J8380_07920 PF00137 ATP synthase subunit C J8380_07925 PF00430 ATP synthase B/B' CF(0) J8380_07930 PF00213 ATP synthase delta (OSCP) subunit J8380_07935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8380_07935 PF00306 ATP synthase alpha/beta chain, C terminal domain J8380_07935 PF02874 ATP synthase alpha/beta family, beta-barrel domain J8380_07940 PF00231 ATP synthase J8380_07945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8380_07945 PF02874 ATP synthase alpha/beta family, beta-barrel domain J8380_07950 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J8380_07950 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J8380_07965 PF03193 RsgA GTPase J8380_07965 PF16745 RsgA N-terminal domain J8380_07970 PF01966 HD domain J8380_07970 PF00072 Response regulator receiver domain J8380_07975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8380_07975 PF00072 Response regulator receiver domain J8380_07975 PF01627 Hpt domain J8380_07975 PF00672 HAMP domain J8380_07975 PF00512 His Kinase A (phospho-acceptor) domain J8380_07975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_07990 PF07728 AAA domain (dynein-related subfamily) J8380_07990 PF08406 CbbQ/NirQ/NorQ C-terminal J8380_08000 PF00101 Ribulose bisphosphate carboxylase, small chain J8380_08005 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain J8380_08005 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain J8380_08010 PF03466 LysR substrate binding domain J8380_08010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_08015 PF00361 Proton-conducting membrane transporter J8380_08015 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J8380_08020 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J8380_08025 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J8380_08025 PF00361 Proton-conducting membrane transporter J8380_08025 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J8380_08030 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J8380_08035 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J8380_08035 PF00361 Proton-conducting membrane transporter J8380_08035 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J8380_08040 PF00361 Proton-conducting membrane transporter J8380_08045 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J8380_08045 PF00361 Proton-conducting membrane transporter J8380_08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_08085 PF03466 LysR substrate binding domain J8380_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_08105 PF03466 LysR substrate binding domain J8380_08110 PF08406 CbbQ/NirQ/NorQ C-terminal J8380_08110 PF07728 AAA domain (dynein-related subfamily) J8380_08115 PF01300 Telomere recombination J8380_08120 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain J8380_08120 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain J8380_08125 PF00101 Ribulose bisphosphate carboxylase, small chain J8380_08150 PF00936 BMC domain J8380_08155 PF00936 BMC domain J8380_08185 PF01740 STAS domain J8380_08185 PF00916 Sulfate permease family J8380_08190 PF00072 Response regulator receiver domain J8380_08190 PF02954 Bacterial regulatory protein, Fis family J8380_08190 PF00158 Sigma-54 interaction domain J8380_08195 PF00072 Response regulator receiver domain J8380_08195 PF13188 PAS domain J8380_08195 PF08448 PAS fold J8380_08195 PF00512 His Kinase A (phospho-acceptor) domain J8380_08195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_08205 PF00916 Sulfate permease family J8380_08205 PF01740 STAS domain J8380_08215 PF00625 Guanylate kinase J8380_08220 PF13419 Haloacid dehalogenase-like hydrolase J8380_08225 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J8380_08225 PF01367 5'-3' exonuclease, C-terminal SAM fold J8380_08235 PF04362 Bacterial Fe(2+) trafficking J8380_08240 PF10576 Iron-sulfur binding domain of endonuclease III J8380_08240 PF00633 Helix-hairpin-helix motif J8380_08240 PF00730 HhH-GPD superfamily base excision DNA repair protein J8380_08240 PF14815 NUDIX domain J8380_08250 PF01527 Transposase J8380_08255 PF00665 Integrase core domain J8380_08255 PF13276 HTH-like domain J8380_08255 PF13333 Integrase core domain J8380_08275 PF00589 Phage integrase family J8380_08275 PF13356 Arm DNA-binding domain J8380_08285 PF05137 Fimbrial assembly protein (PilN) J8380_08300 PF00263 Bacterial type II and III secretion system protein J8380_08300 PF03958 Bacterial type II/III secretion system short domain J8380_08325 PF00005 ABC transporter J8380_08325 PF14524 Wzt C-terminal domain J8380_08340 PF00535 Glycosyl transferase family 2 J8380_08355 PF00535 Glycosyl transferase family 2 J8380_08360 PF00535 Glycosyl transferase family 2 J8380_08365 PF00572 Ribosomal protein L13 J8380_08370 PF00380 Ribosomal protein S9/S16 J8380_08375 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J8380_08440 PF01751 Toprim domain J8380_08440 PF01131 DNA topoisomerase J8380_08470 PF06834 TraU protein J8380_08485 PF06986 Type-1V conjugative transfer system mating pair stabilisation J8380_08500 PF01464 Transglycosylase SLT domain J8380_08545 PF09676 Type IV conjugative transfer system lipoprotein (TraV) J8380_08570 PF06122 Conjugative relaxosome accessory transposon protein J8380_08575 PF07916 TraG-like protein, N-terminal region J8380_08580 PF00816 H-NS histone family J8380_08585 PF00150 Cellulase (glycosyl hydrolase family 5) J8380_08585 PF00331 Glycosyl hydrolase family 10 J8380_08585 PF00942 Cellulose binding domain J8380_08600 PF02796 Helix-turn-helix domain of resolvase J8380_08600 PF00239 Resolvase, N terminal domain J8380_08830 PF00589 Phage integrase family J8380_08830 PF02899 Phage integrase, N-terminal SAM-like domain J8380_08840 PF00561 alpha/beta hydrolase fold J8380_08840 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J8380_08845 PF00588 SpoU rRNA Methylase family J8380_08850 PF01235 Sodium:alanine symporter family J8380_08855 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J8380_08865 PF00437 Type II/IV secretion system protein J8380_08875 PF00849 RNA pseudouridylate synthase J8380_08875 PF01479 S4 domain J8380_08890 PF00267 Gram-negative porin J8380_08930 PF02774 Semialdehyde dehydrogenase, dimerisation domain J8380_08930 PF01118 Semialdehyde dehydrogenase, NAD binding domain J8380_08935 PF02660 Glycerol-3-phosphate acyltransferase J8380_08940 PF00561 alpha/beta hydrolase fold J8380_08945 PF08241 Methyltransferase domain J8380_08950 PF01903 CbiX J8380_08965 PF05164 Cell division protein ZapA J8380_08980 PF05195 Aminopeptidase P, N-terminal domain J8380_08980 PF00557 Metallopeptidase family M24 J8380_08990 PF01494 FAD binding domain J8380_09000 PF01645 Conserved region in glutamate synthase J8380_09005 PF17191 RecG wedge domain J8380_09005 PF00270 DEAD/DEAH box helicase J8380_09005 PF13749 Putative ATP-dependent DNA helicase recG C-terminal J8380_09010 PF17761 DUF1016 N-terminal domain J8380_09010 PF06250 YhcG PDDEXK nuclease domain J8380_09015 PF00202 Aminotransferase class-III J8380_09040 PF05685 Putative restriction endonuclease J8380_09090 PF00291 Pyridoxal-phosphate dependent enzyme J8380_09095 PF00290 Tryptophan synthase alpha chain J8380_09100 PF01039 Carboxyl transferase domain J8380_09100 PF17848 Acetyl-coA carboxylase zinc finger domain J8380_09105 PF08245 Mur ligase middle domain J8380_09105 PF02875 Mur ligase family, glutamate ligase domain J8380_09115 PF02674 Colicin V production protein J8380_09120 PF00156 Phosphoribosyl transferase domain J8380_09125 PF03734 L,D-transpeptidase catalytic domain J8380_09130 PF01053 Cys/Met metabolism PLP-dependent enzyme J8380_09135 PF13660 Domain of unknown function (DUF4147) J8380_09135 PF05161 MOFRL family J8380_09140 PF04305 Protein of unknown function (DUF455) J8380_09150 PF00005 ABC transporter J8380_09150 PF12848 ABC transporter J8380_09155 PF01476 LysM domain J8380_09155 PF08525 Opacity-associated protein A N-terminal motif J8380_09155 PF01551 Peptidase family M23 J8380_09180 PF02706 Chain length determinant protein J8380_09180 PF13614 AAA domain J8380_09180 PF13807 G-rich domain on putative tyrosine kinase J8380_09185 PF02563 Polysaccharide biosynthesis/export protein J8380_09185 PF10531 SLBB domain J8380_09195 PF02719 Polysaccharide biosynthesis protein J8380_09210 PF01370 NAD dependent epimerase/dehydratase family J8380_09235 PF02350 UDP-N-acetylglucosamine 2-epimerase J8380_09240 PF01370 NAD dependent epimerase/dehydratase family J8380_09245 PF08485 Polysaccharide biosynthesis protein C-terminal J8380_09245 PF02719 Polysaccharide biosynthesis protein J8380_09265 PF00977 Histidine biosynthesis protein J8380_09270 PF00117 Glutamine amidotransferase class-I J8380_09280 PF02348 Cytidylyltransferase J8380_09285 PF00483 Nucleotidyl transferase J8380_09290 PF02350 UDP-N-acetylglucosamine 2-epimerase J8380_09295 PF03102 NeuB family J8380_09295 PF08666 SAF domain J8380_09305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J8380_09310 PF01370 NAD dependent epimerase/dehydratase family J8380_09315 PF01943 Polysaccharide biosynthesis protein J8380_09320 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J8380_09330 PF00132 Bacterial transferase hexapeptide (six repeats) J8380_09335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J8380_09335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J8380_09340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J8380_09340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J8380_09340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J8380_09345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J8380_09345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J8380_09345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J8380_09350 PF13333 Integrase core domain J8380_09350 PF00665 Integrase core domain J8380_09350 PF13276 HTH-like domain J8380_09360 PF03144 Elongation factor Tu domain 2 J8380_09360 PF16658 Class II release factor RF3, C-terminal domain J8380_09360 PF00009 Elongation factor Tu GTP binding domain J8380_09370 PF00085 Thioredoxin J8380_09375 PF00072 Response regulator receiver domain J8380_09375 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8380_09375 PF00672 HAMP domain J8380_09375 PF01627 Hpt domain J8380_09375 PF00512 His Kinase A (phospho-acceptor) domain J8380_09375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_09395 PF00171 Aldehyde dehydrogenase family J8380_09405 PF00830 Ribosomal L28 family J8380_09410 PF00471 Ribosomal protein L33 J8380_09420 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J8380_09425 PF02152 Dihydroneopterin aldolase J8380_09445 PF00437 Type II/IV secretion system protein J8380_09445 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J8380_09450 PF00482 Type II secretion system (T2SS), protein F J8380_09455 PF07963 Prokaryotic N-terminal methylation motif J8380_09455 PF08334 Type II secretion system (T2SS), protein G J8380_09475 PF03934 Type II secretion system (T2SS), protein K J8380_09490 PF05685 Putative restriction endonuclease J8380_09510 PF18211 Csm1 subunit domain B J8380_09510 PF01966 HD domain J8380_09520 PF03787 RAMP superfamily J8380_09525 PF03787 RAMP superfamily J8380_09540 PF03787 RAMP superfamily J8380_09555 PF09820 Predicted AAA-ATPase J8380_09555 PF08011 PD-(D/E)XK nuclease superfamily J8380_09580 PF01867 CRISPR associated protein Cas1 J8380_09620 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J8380_09620 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J8380_09625 PF09335 SNARE associated Golgi protein J8380_09635 PF13361 UvrD-like helicase C-terminal domain J8380_09635 PF00580 UvrD/REP helicase N-terminal domain J8380_09640 PF02463 RecF/RecN/SMC N terminal domain J8380_09660 PF03976 Polyphosphate kinase 2 (PPK2) J8380_09665 PF13635 Domain of unknown function (DUF4143) J8380_09665 PF13173 AAA domain J8380_09670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_09670 PF03466 LysR substrate binding domain J8380_09675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J8380_09675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J8380_09675 PF00378 Enoyl-CoA hydratase/isomerase J8380_09680 PF00462 Glutaredoxin J8380_09690 PF03023 Lipid II flippase MurJ J8380_09700 PF00085 Thioredoxin J8380_09710 PF08019 Phosphoethanolamine transferase EptA/EptB J8380_09710 PF00884 Sulfatase J8380_09720 PF04055 Radical SAM superfamily J8380_09720 PF01938 TRAM domain J8380_09720 PF00919 Uncharacterized protein family UPF0004 J8380_09740 PF02789 Cytosol aminopeptidase family, N-terminal domain J8380_09740 PF00883 Cytosol aminopeptidase family, catalytic domain J8380_09745 PF00293 NUDIX domain J8380_09745 PF09297 NADH pyrophosphatase zinc ribbon domain J8380_09755 PF00117 Glutamine amidotransferase class-I J8380_09760 PF04715 Anthranilate synthase component I, N terminal region J8380_09760 PF00425 chorismate binding enzyme J8380_09775 PF13419 Haloacid dehalogenase-like hydrolase J8380_09780 PF00834 Ribulose-phosphate 3 epimerase family J8380_09800 PF13525 Outer membrane lipoprotein J8380_09805 PF01479 S4 domain J8380_09805 PF00849 RNA pseudouridylate synthase J8380_09835 PF13472 GDSL-like Lipase/Acylhydrolase family J8380_09840 PF00005 ABC transporter J8380_09870 PF03781 Sulfatase-modifying factor enzyme 1 J8380_09880 PF13173 AAA domain J8380_09880 PF13635 Domain of unknown function (DUF4143) J8380_09890 PF05685 Putative restriction endonuclease J8380_09905 PF13614 AAA domain J8380_09910 PF01061 ABC-2 type transporter J8380_09915 PF00005 ABC transporter J8380_09920 PF00912 Transglycosylase J8380_09945 PF01985 CRS1 / YhbY (CRM) domain J8380_09950 PF01728 FtsJ-like methyltransferase J8380_09955 PF00004 ATPase family associated with various cellular activities (AAA) J8380_09955 PF17862 AAA+ lid domain J8380_09955 PF06480 FtsH Extracellular J8380_09955 PF01434 Peptidase family M41 J8380_09960 PF00809 Pterin binding enzyme J8380_09970 PF00121 Triosephosphate isomerase J8380_09975 PF03840 Preprotein translocase SecG subunit J8380_09985 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J8380_09990 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J8380_09995 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J8380_10000 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J8380_10010 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J8380_10010 PF10531 SLBB domain J8380_10010 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J8380_10015 PF00384 Molybdopterin oxidoreductase J8380_10015 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J8380_10015 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J8380_10020 PF00146 NADH dehydrogenase J8380_10025 PF12838 4Fe-4S dicluster domain J8380_10030 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J8380_10035 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J8380_10040 PF00361 Proton-conducting membrane transporter J8380_10040 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J8380_10045 PF00361 Proton-conducting membrane transporter J8380_10045 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J8380_10050 PF00361 Proton-conducting membrane transporter J8380_10065 PF02576 RimP N-terminal domain J8380_10065 PF17384 RimP C-terminal SH3 domain J8380_10070 PF13184 NusA-like KH domain J8380_10070 PF08529 NusA N-terminal domain J8380_10075 PF00009 Elongation factor Tu GTP binding domain J8380_10075 PF03144 Elongation factor Tu domain 2 J8380_10075 PF11987 Translation-initiation factor 2 J8380_10075 PF08364 Bacterial translation initiation factor IF-2 associated region J8380_10075 PF04760 Translation initiation factor IF-2, N-terminal region J8380_10080 PF02033 Ribosome-binding factor A J8380_10085 PF01509 TruB family pseudouridylate synthase (N terminal domain) J8380_10085 PF16198 tRNA pseudouridylate synthase B C-terminal domain J8380_10085 PF09157 Pseudouridine synthase II TruB, C-terminal J8380_10105 PF03937 Flavinator of succinate dehydrogenase J8380_10110 PF13085 2Fe-2S iron-sulfur cluster binding domain J8380_10110 PF13237 4Fe-4S dicluster domain J8380_10115 PF00890 FAD binding domain J8380_10115 PF02910 Fumarate reductase flavoprotein C-term J8380_10125 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J8380_10135 PF02779 Transketolase, pyrimidine binding domain J8380_10135 PF00676 Dehydrogenase E1 component J8380_10135 PF16078 2-oxoglutarate dehydrogenase N-terminus J8380_10135 PF16870 2-oxoglutarate dehydrogenase C-terminal J8380_10140 PF03969 AFG1-like ATPase J8380_10145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J8380_10145 PF00364 Biotin-requiring enzyme J8380_10145 PF02817 e3 binding domain J8380_10150 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_10150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J8380_10155 PF08442 ATP-grasp domain J8380_10155 PF00549 CoA-ligase J8380_10160 PF00549 CoA-ligase J8380_10160 PF02629 CoA binding domain J8380_10165 PF00285 Citrate synthase, C-terminal domain J8380_10185 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_10185 PF18113 Rubredoxin binding C-terminal domain J8380_10190 PF09190 DALR domain J8380_10190 PF01406 tRNA synthetases class I (C) catalytic domain J8380_10215 PF05685 Putative restriction endonuclease J8380_10235 PF00005 ABC transporter J8380_10235 PF17755 UvrA DNA-binding domain J8380_10235 PF17760 UvrA interaction domain J8380_10280 PF13439 Glycosyltransferase Family 4 J8380_10280 PF00534 Glycosyl transferases group 1 J8380_10305 PF00893 Small Multidrug Resistance protein J8380_10335 PF12849 PBP superfamily domain J8380_10340 PF01209 ubiE/COQ5 methyltransferase family J8380_10355 PF13657 HipA N-terminal domain J8380_10355 PF07804 HipA-like C-terminal domain J8380_10370 PF00528 Binding-protein-dependent transport system inner membrane component J8380_10375 PF00528 Binding-protein-dependent transport system inner membrane component J8380_10380 PF00005 ABC transporter J8380_10385 PF01895 PhoU domain J8380_10390 PF00486 Transcriptional regulatory protein, C terminal J8380_10390 PF00072 Response regulator receiver domain J8380_10395 PF00512 His Kinase A (phospho-acceptor) domain J8380_10395 PF11808 Phosphate regulon sensor protein PhoR J8380_10395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_10395 PF00989 PAS fold J8380_10400 PF01627 Hpt domain J8380_10400 PF00512 His Kinase A (phospho-acceptor) domain J8380_10400 PF00072 Response regulator receiver domain J8380_10400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_10400 PF00672 HAMP domain J8380_10400 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8380_10405 PF02769 AIR synthase related protein, C-terminal domain J8380_10405 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J8380_10405 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J8380_10410 PF00155 Aminotransferase class I and II J8380_10415 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J8380_10420 PF01571 Aminomethyltransferase folate-binding domain J8380_10430 PF03795 YCII-related domain J8380_10435 PF01300 Telomere recombination J8380_10440 PF02163 Peptidase family M50 J8380_10445 PF00579 tRNA synthetases class I (W and Y) J8380_10450 PF02616 Segregation and condensation protein ScpA J8380_10460 PF01850 PIN domain J8380_10465 PF09957 Bacterial antitoxin of type II TA system, VapB J8380_10470 PF01555 DNA methylase J8380_10520 PF02547 Queuosine biosynthesis protein J8380_10530 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J8380_10530 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J8380_10535 PF03618 Kinase/pyrophosphorylase J8380_10540 PF02896 PEP-utilising enzyme, TIM barrel domain J8380_10540 PF00391 PEP-utilising enzyme, mobile domain J8380_10540 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J8380_10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_10545 PF03466 LysR substrate binding domain J8380_10550 PF13439 Glycosyltransferase Family 4 J8380_10550 PF00534 Glycosyl transferases group 1 J8380_10600 PF06969 HemN C-terminal domain J8380_10600 PF04055 Radical SAM superfamily J8380_10605 PF00027 Cyclic nucleotide-binding domain J8380_10605 PF13545 Crp-like helix-turn-helix domain J8380_10615 PF01066 CDP-alcohol phosphatidyltransferase J8380_10625 PF02687 FtsX-like permease family J8380_10625 PF12704 MacB-like periplasmic core domain J8380_10630 PF02687 FtsX-like permease family J8380_10630 PF12704 MacB-like periplasmic core domain J8380_10635 PF00005 ABC transporter J8380_10650 PF00753 Metallo-beta-lactamase superfamily J8380_10650 PF03772 Competence protein J8380_10665 PF04337 Protein of unknown function, DUF480 J8380_10670 PF02254 TrkA-N domain J8380_10670 PF00999 Sodium/hydrogen exchanger family J8380_10670 PF02080 TrkA-C domain J8380_10675 PF02600 Disulfide bond formation protein DsbB J8380_10680 PF01207 Dihydrouridine synthase (Dus) J8380_10685 PF02954 Bacterial regulatory protein, Fis family J8380_10695 PF03150 Di-haem cytochrome c peroxidase J8380_10700 PF00899 ThiF family J8380_10705 PF00709 Adenylosuccinate synthetase J8380_10710 PF13393 Histidyl-tRNA synthetase J8380_10720 PF01145 SPFH domain / Band 7 family J8380_10725 PF01145 SPFH domain / Band 7 family J8380_10730 PF01476 LysM domain J8380_10730 PF08525 Opacity-associated protein A N-terminal motif J8380_10730 PF01551 Peptidase family M23 J8380_10735 PF00155 Aminotransferase class I and II J8380_10740 PF01541 GIY-YIG catalytic domain J8380_10740 PF02151 UvrB/uvrC motif J8380_10740 PF08459 UvrC Helix-hairpin-helix N-terminal J8380_10745 PF01066 CDP-alcohol phosphatidyltransferase J8380_10760 PF00829 Ribosomal prokaryotic L21 protein J8380_10765 PF18393 MotY N-terminal domain J8380_10765 PF00691 OmpA family J8380_10770 PF03453 MoeA N-terminal region (domain I and II) J8380_10770 PF03454 MoeA C-terminal region (domain IV) J8380_10770 PF00994 Probable molybdopterin binding domain J8380_10775 PF00082 Subtilase family J8380_10775 PF04151 Bacterial pre-peptidase C-terminal domain J8380_10780 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J8380_10780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J8380_10780 PF00361 Proton-conducting membrane transporter J8380_10780 PF13244 Domain of unknown function (DUF4040) J8380_10790 PF00361 Proton-conducting membrane transporter J8380_10795 PF01899 Na+/H+ ion antiporter subunit J8380_10800 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J8380_10805 PF03334 Na+/H+ antiporter subunit J8380_10835 PF07929 Plasmid pRiA4b ORF-3-like protein J8380_10840 PF07929 Plasmid pRiA4b ORF-3-like protein J8380_10855 PF04480 Protein of unknown function (DUF559) J8380_10890 PF00085 Thioredoxin J8380_10900 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J8380_10905 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_10910 PF17854 FtsK alpha domain J8380_10910 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J8380_10910 PF09397 Ftsk gamma domain J8380_10910 PF01580 FtsK/SpoIIIE family J8380_10915 PF03548 Outer membrane lipoprotein carrier protein LolA J8380_10920 PF12002 MgsA AAA+ ATPase C terminal J8380_10920 PF16193 AAA C-terminal domain J8380_10920 PF00004 ATPase family associated with various cellular activities (AAA) J8380_10925 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_10925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J8380_10930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J8380_10930 PF00364 Biotin-requiring enzyme J8380_10930 PF02817 e3 binding domain J8380_10935 PF17831 Pyruvate dehydrogenase E1 component middle domain J8380_10935 PF00456 Transketolase, thiamine diphosphate binding domain J8380_10940 PF00929 Exonuclease J8380_10945 PF13416 Bacterial extracellular solute-binding protein J8380_10950 PF00528 Binding-protein-dependent transport system inner membrane component J8380_10955 PF00528 Binding-protein-dependent transport system inner membrane component J8380_10960 PF00005 ABC transporter J8380_10960 PF08402 TOBE domain J8380_11000 PF14338 Mrr N-terminal domain J8380_11000 PF04471 Restriction endonuclease J8380_11010 PF10431 C-terminal, D2-small domain, of ClpB protein J8380_11010 PF02861 Clp amino terminal domain, pathogenicity island component J8380_11010 PF17871 AAA lid domain J8380_11010 PF07724 AAA domain (Cdc48 subfamily) J8380_11010 PF00004 ATPase family associated with various cellular activities (AAA) J8380_11055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8380_11110 PF08534 Redoxin J8380_11115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8380_11120 PF03279 Bacterial lipid A biosynthesis acyltransferase J8380_11125 PF01467 Cytidylyltransferase-like J8380_11125 PF00294 pfkB family carbohydrate kinase J8380_11130 PF01266 FAD dependent oxidoreductase J8380_11135 PF00248 Aldo/keto reductase family J8380_11155 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J8380_11170 PF00535 Glycosyl transferase family 2 J8380_11175 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J8380_11180 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J8380_11190 PF00175 Oxidoreductase NAD-binding domain J8380_11190 PF00970 Oxidoreductase FAD-binding domain J8380_11190 PF00111 2Fe-2S iron-sulfur cluster binding domain J8380_11210 PF18650 Immunomodulating metalloprotease N-terminal domain J8380_11210 PF18642 Immunomodulating metalloprotease helical domain J8380_11210 PF13402 Peptidase M60, enhancin and enhancin-like J8380_11215 PF02405 Permease MlaE J8380_11220 PF00005 ABC transporter J8380_11265 PF01738 Dienelactone hydrolase family J8380_11270 PF03781 Sulfatase-modifying factor enzyme 1 J8380_11270 PF12867 DinB superfamily J8380_11275 PF00291 Pyridoxal-phosphate dependent enzyme J8380_11275 PF00585 C-terminal regulatory domain of Threonine dehydratase J8380_11280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J8380_11315 PF10502 Signal peptidase, peptidase S26 J8380_11320 PF02436 Conserved carboxylase domain J8380_11320 PF00682 HMGL-like J8380_11320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J8380_11320 PF02785 Biotin carboxylase C-terminal domain J8380_11320 PF00289 Biotin carboxylase, N-terminal domain J8380_11320 PF00364 Biotin-requiring enzyme J8380_11345 PF00672 HAMP domain J8380_11345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_11345 PF00512 His Kinase A (phospho-acceptor) domain J8380_11350 PF00072 Response regulator receiver domain J8380_11350 PF00486 Transcriptional regulatory protein, C terminal J8380_11355 PF00873 AcrB/AcrD/AcrF family J8380_11365 PF08359 YsiA-like protein, C-terminal region J8380_11365 PF00440 Bacterial regulatory proteins, tetR family J8380_11370 PF00117 Glutamine amidotransferase class-I J8380_11370 PF06418 CTP synthase N-terminus J8380_11375 PF00793 DAHP synthetase I family J8380_11380 PF00113 Enolase, C-terminal TIM barrel domain J8380_11380 PF03952 Enolase, N-terminal domain J8380_11385 PF04977 Septum formation initiator J8380_11390 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J8380_11395 PF03960 ArsC family J8380_11400 PF03358 NADPH-dependent FMN reductase J8380_11410 PF02542 YgbB family J8380_11415 PF01329 Pterin 4 alpha carbinolamine dehydratase J8380_11420 PF00749 tRNA synthetases class I (E and Q), catalytic domain J8380_11425 PF01258 Prokaryotic dksA/traR C4-type zinc finger J8380_11450 PF02785 Biotin carboxylase C-terminal domain J8380_11450 PF00289 Biotin carboxylase, N-terminal domain J8380_11450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J8380_11455 PF00364 Biotin-requiring enzyme J8380_11460 PF01220 Dehydroquinase class II J8380_11465 PF05872 Bacterial protein of unknown function (DUF853) J8380_11490 PF01230 HIT domain J8380_11500 PF02562 PhoH-like protein J8380_11505 PF02130 Uncharacterized protein family UPF0054 J8380_11510 PF00571 CBS domain J8380_11510 PF03471 Transporter associated domain J8380_11515 PF00795 Carbon-nitrogen hydrolase J8380_11525 PF00925 GTP cyclohydrolase II J8380_11525 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J8380_11530 PF00885 6,7-dimethyl-8-ribityllumazine synthase J8380_11535 PF01029 NusB family J8380_11570 PF00133 tRNA synthetases class I (I, L, M and V) J8380_11570 PF13603 Leucyl-tRNA synthetase, Domain 2 J8380_11570 PF08264 Anticodon-binding domain of tRNA J8380_11585 PF04055 Radical SAM superfamily J8380_11585 PF06463 Molybdenum Cofactor Synthesis C J8380_11620 PF12804 MobA-like NTP transferase domain J8380_11630 PF00691 OmpA family J8380_11630 PF05736 OprF membrane domain J8380_11635 PF02789 Cytosol aminopeptidase family, N-terminal domain J8380_11635 PF00883 Cytosol aminopeptidase family, catalytic domain J8380_11645 PF10119 Predicted methyltransferase regulatory domain J8380_11645 PF13847 Methyltransferase domain J8380_11655 PF01180 Dihydroorotate dehydrogenase J8380_11665 PF00933 Glycosyl hydrolase family 3 N terminal domain J8380_11670 PF00171 Aldehyde dehydrogenase family J8380_11670 PF01619 Proline dehydrogenase J8380_11670 PF14850 DNA-binding domain of Proline dehydrogenase J8380_11670 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J8380_11680 PF00156 Phosphoribosyl transferase domain J8380_11685 PF01048 Phosphorylase superfamily J8380_11700 PF13361 UvrD-like helicase C-terminal domain J8380_11700 PF00580 UvrD/REP helicase N-terminal domain J8380_11700 PF12705 PD-(D/E)XK nuclease superfamily J8380_11720 PF14495 Cytochrome c-550 domain J8380_11800 PF01548 Transposase J8380_11800 PF02371 Transposase IS116/IS110/IS902 family J8380_11830 PF01548 Transposase J8380_11830 PF02371 Transposase IS116/IS110/IS902 family J8380_11860 PF13495 Phage integrase, N-terminal SAM-like domain J8380_11860 PF00589 Phage integrase family J8380_11900 PF08378 Nuclease-related domain J8380_11905 PF01555 DNA methylase J8380_11905 PF18273 Type III R-M EcoP15I C-terminal domain J8380_12005 PF12728 Helix-turn-helix domain J8380_12035 PF04545 Sigma-70, region 4 J8380_12035 PF04539 Sigma-70 region 3 J8380_12035 PF04542 Sigma-70 region 2 J8380_12035 PF03979 Sigma-70 factor, region 1.1 J8380_12035 PF04546 Sigma-70, non-essential region J8380_12035 PF00140 Sigma-70 factor, region 1.2 J8380_12040 PF10410 DnaB-helicase binding domain of primase J8380_12040 PF08278 DNA primase DnaG DnaB-binding J8380_12040 PF08275 DNA primase catalytic core, N-terminal domain J8380_12040 PF01807 CHC2 zinc finger J8380_12045 PF00310 Glutamine amidotransferases class-II J8380_12045 PF04898 Glutamate synthase central domain J8380_12045 PF01493 GXGXG motif J8380_12045 PF01645 Conserved region in glutamate synthase J8380_12050 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_12050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J8380_12095 PF16177 Acetyl-coenzyme A synthetase N-terminus J8380_12095 PF00501 AMP-binding enzyme J8380_12095 PF13193 AMP-binding enzyme C-terminal domain J8380_12100 PF04303 PrpF protein J8380_12105 PF00330 Aconitase family (aconitate hydratase) J8380_12105 PF00694 Aconitase C-terminal domain J8380_12110 PF00285 Citrate synthase, C-terminal domain J8380_12125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J8380_12125 PF00117 Glutamine amidotransferase class-I J8380_12130 PF02142 MGS-like domain J8380_12130 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J8380_12130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J8380_12135 PF01272 Transcription elongation factor, GreA/GreB, C-term J8380_12135 PF03449 Transcription elongation factor, N-terminal J8380_12140 PF02654 Cobalamin-5-phosphate synthase J8380_12145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J8380_12145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J8380_12145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J8380_12145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J8380_12155 PF02082 Transcriptional regulator J8380_12160 PF00586 AIR synthase related protein, N-terminal domain J8380_12160 PF02769 AIR synthase related protein, C-terminal domain J8380_12175 PF00696 Amino acid kinase family J8380_12185 PF00692 dUTPase J8380_12190 PF04127 DNA / pantothenate metabolism flavoprotein J8380_12190 PF02441 Flavoprotein J8380_12195 PF04002 RadC-like JAB domain J8380_12200 PF01565 FAD binding domain J8380_12200 PF08031 Berberine and berberine like J8380_12215 PF02463 RecF/RecN/SMC N terminal domain J8380_12215 PF06470 SMC proteins Flexible Hinge Domain J8380_12220 PF04354 ZipA, C-terminal FtsZ-binding domain J8380_12225 PF08402 TOBE domain J8380_12225 PF00005 ABC transporter J8380_12230 PF00528 Binding-protein-dependent transport system inner membrane component J8380_12235 PF13416 Bacterial extracellular solute-binding protein J8380_12250 PF03738 Glutathionylspermidine synthase preATP-grasp J8380_12265 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J8380_12265 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J8380_12270 PF10369 Small subunit of acetolactate synthase J8380_12275 PF00205 Thiamine pyrophosphate enzyme, central domain J8380_12275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J8380_12275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J8380_12280 PF03958 Bacterial type II/III secretion system short domain J8380_12280 PF00263 Bacterial type II and III secretion system protein J8380_12285 PF00437 Type II/IV secretion system protein J8380_12290 PF00482 Type II secretion system (T2SS), protein F J8380_12295 PF05188 MutS domain II J8380_12295 PF05192 MutS domain III J8380_12295 PF05190 MutS family domain IV J8380_12295 PF00488 MutS domain V J8380_12295 PF01624 MutS domain I J8380_12300 PF04102 SlyX J8380_12305 PF00764 Arginosuccinate synthase J8380_12325 PF00374 Nickel-dependent hydrogenase J8380_12330 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J8380_12335 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J8380_12340 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J8380_12340 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J8380_12345 PF00485 Phosphoribulokinase / Uridine kinase family J8380_12350 PF00890 FAD binding domain J8380_12350 PF02910 Fumarate reductase flavoprotein C-term J8380_12355 PF02230 Phospholipase/Carboxylesterase J8380_12365 PF05175 Methyltransferase small domain J8380_12370 PF02666 Phosphatidylserine decarboxylase J8380_12375 PF00156 Phosphoribosyl transferase domain J8380_12380 PF13361 UvrD-like helicase C-terminal domain J8380_12380 PF00580 UvrD/REP helicase N-terminal domain J8380_12390 PF02463 RecF/RecN/SMC N terminal domain J8380_12400 PF01510 N-acetylmuramoyl-L-alanine amidase J8380_12410 PF00464 Serine hydroxymethyltransferase J8380_12415 PF03477 ATP cone domain J8380_12420 PF01872 RibD C-terminal domain J8380_12420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J8380_12425 PF00677 Lumazine binding domain J8380_12430 PF00586 AIR synthase related protein, N-terminal domain J8380_12430 PF02769 AIR synthase related protein, C-terminal domain J8380_12450 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J8380_12460 PF00849 RNA pseudouridylate synthase J8380_12465 PF01565 FAD binding domain J8380_12465 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J8380_12470 PF07691 PA14 domain J8380_12470 PF12791 Anti-sigma factor N-terminus J8380_12480 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding J8380_12480 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_12480 PF10518 TAT (twin-arginine translocation) pathway signal sequence J8380_12485 PF05958 tRNA (Uracil-5-)-methyltransferase J8380_12490 PF13749 Putative ATP-dependent DNA helicase recG C-terminal J8380_12490 PF17191 RecG wedge domain J8380_12490 PF00270 DEAD/DEAH box helicase J8380_12495 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J8380_12495 PF00533 BRCA1 C Terminus (BRCT) domain J8380_12495 PF01653 NAD-dependent DNA ligase adenylation domain J8380_12495 PF03120 NAD-dependent DNA ligase OB-fold domain J8380_12495 PF12826 Helix-hairpin-helix motif J8380_12530 PF16078 2-oxoglutarate dehydrogenase N-terminus J8380_12530 PF00676 Dehydrogenase E1 component J8380_12530 PF16870 2-oxoglutarate dehydrogenase C-terminal J8380_12530 PF02779 Transketolase, pyrimidine binding domain J8380_12545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J8380_12555 PF10091 Putative glucoamylase J8380_12555 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J8380_12555 PF06165 Glycosyltransferase family 36 J8380_12570 PF05532 CsbD-like J8380_12590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8380_12595 PF02687 FtsX-like permease family J8380_12595 PF12704 MacB-like periplasmic core domain J8380_12600 PF00005 ABC transporter J8380_12605 PF08011 PD-(D/E)XK nuclease superfamily J8380_12605 PF09820 Predicted AAA-ATPase J8380_12610 PF00689 Cation transporting ATPase, C-terminus J8380_12610 PF00690 Cation transporter/ATPase, N-terminus J8380_12620 PF00226 DnaJ domain J8380_12620 PF01556 DnaJ C terminal domain J8380_12630 PF01734 Patatin-like phospholipase J8380_12635 PF00923 Transaldolase/Fructose-6-phosphate aldolase J8380_12640 PF09364 XFP N-terminal domain J8380_12640 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase J8380_12640 PF09363 XFP C-terminal domain J8380_12645 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system J8380_12665 PF01515 Phosphate acetyl/butaryl transferase J8380_12665 PF07085 DRTGG domain J8380_12670 PF00871 Acetokinase family J8380_12685 PF03848 Tellurite resistance protein TehB J8380_12700 PF03350 Uncharacterized protein family, UPF0114 J8380_12710 PF00672 HAMP domain J8380_12710 PF00512 His Kinase A (phospho-acceptor) domain J8380_12710 PF01627 Hpt domain J8380_12710 PF00072 Response regulator receiver domain J8380_12710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8380_12710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_12715 PF00664 ABC transporter transmembrane region J8380_12715 PF00005 ABC transporter J8380_12735 PF09704 CRISPR-associated protein (Cas_Cas5) J8380_12765 PF01867 CRISPR associated protein Cas1 J8380_12770 PF09827 CRISPR associated protein Cas2 J8380_12780 PF01370 NAD dependent epimerase/dehydratase family J8380_12790 PF08212 Lipocalin-like domain J8380_12800 PF13426 PAS domain J8380_12800 PF01740 STAS domain J8380_12805 PF00106 short chain dehydrogenase J8380_12840 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system J8380_12895 PF03150 Di-haem cytochrome c peroxidase J8380_12895 PF00034 Cytochrome c J8380_12905 PF02470 MlaD protein J8380_12910 PF01209 ubiE/COQ5 methyltransferase family J8380_12925 PF01571 Aminomethyltransferase folate-binding domain J8380_12925 PF08669 Glycine cleavage T-protein C-terminal barrel domain J8380_12930 PF01597 Glycine cleavage H-protein J8380_12935 PF02347 Glycine cleavage system P-protein J8380_12965 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit J8380_12965 PF13187 4Fe-4S dicluster domain J8380_12970 PF00890 FAD binding domain J8380_12980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8380_12995 PF13545 Crp-like helix-turn-helix domain J8380_12995 PF00027 Cyclic nucleotide-binding domain J8380_13000 PF10609 NUBPL iron-transfer P-loop NTPase J8380_13020 PF00692 dUTPase J8380_13025 PF00465 Iron-containing alcohol dehydrogenase J8380_13040 PF00912 Transglycosylase J8380_13040 PF00905 Penicillin binding protein transpeptidase domain J8380_13040 PF14814 Bifunctional transglycosylase second domain J8380_13050 PF13307 Helicase C-terminal domain J8380_13050 PF06733 DEAD_2 J8380_13055 PF00814 Glycoprotease family J8380_13060 PF04055 Radical SAM superfamily J8380_13065 PF00149 Calcineurin-like phosphoesterase J8380_13070 PF04241 Protein of unknown function (DUF423) J8380_13075 PF04445 Putative SAM-dependent methyltransferase J8380_13080 PF01722 BolA-like protein J8380_13085 PF17863 AAA lid domain J8380_13085 PF07726 ATPase family associated with various cellular activities (AAA) J8380_13090 PF01882 Protein of unknown function DUF58 J8380_13105 PF07584 Aerotolerance regulator N-terminal J8380_13105 PF00092 von Willebrand factor type A domain J8380_13115 PF14489 QueF-like protein J8380_13120 PF02224 Cytidylate kinase J8380_13125 PF00575 S1 RNA binding domain J8380_13130 PF00216 Bacterial DNA-binding protein J8380_13135 PF18073 Rubredoxin metal binding domain J8380_13140 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J8380_13145 PF04356 Protein of unknown function (DUF489) J8380_13155 PF00293 NUDIX domain J8380_13160 PF02617 ATP-dependent Clp protease adaptor protein ClpS J8380_13165 PF00004 ATPase family associated with various cellular activities (AAA) J8380_13165 PF07724 AAA domain (Cdc48 subfamily) J8380_13165 PF17871 AAA lid domain J8380_13165 PF02861 Clp amino terminal domain, pathogenicity island component J8380_13165 PF10431 C-terminal, D2-small domain, of ClpB protein J8380_13170 PF01176 Translation initiation factor 1A / IF-1 J8380_13175 PF00698 Acyl transferase domain J8380_13185 PF00550 Phosphopantetheine attachment site J8380_13190 PF00109 Beta-ketoacyl synthase, N-terminal domain J8380_13190 PF02801 Beta-ketoacyl synthase, C-terminal domain J8380_13195 PF00425 chorismate binding enzyme J8380_13195 PF04715 Anthranilate synthase component I, N terminal region J8380_13200 PF01063 Amino-transferase class IV J8380_13205 PF02618 YceG-like family J8380_13210 PF02223 Thymidylate kinase J8380_13215 PF09115 DNA polymerase III, delta subunit, C terminal J8380_13245 PF00106 short chain dehydrogenase J8380_13255 PF01389 OmpA-like transmembrane domain J8380_13255 PF00691 OmpA family J8380_13260 PF02938 GAD domain J8380_13260 PF00152 tRNA synthetases class II (D, K and N) J8380_13260 PF01336 OB-fold nucleic acid binding domain J8380_13270 PF01170 Putative RNA methylase family UPF0020 J8380_13270 PF02926 THUMP domain J8380_13270 PF10672 S-adenosylmethionine-dependent methyltransferase J8380_13280 PF03695 Uncharacterised protein family (UPF0149) J8380_13280 PF02810 SEC-C motif J8380_13290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J8380_13290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J8380_13295 PF12419 SNF2 Helicase protein J8380_13295 PF00271 Helicase conserved C-terminal domain J8380_13295 PF00176 SNF2 family N-terminal domain J8380_13305 PF00072 Response regulator receiver domain J8380_13305 PF00196 Bacterial regulatory proteins, luxR family J8380_13310 PF01339 CheB methylesterase J8380_13310 PF01739 CheR methyltransferase, SAM binding domain J8380_13310 PF03705 CheR methyltransferase, all-alpha domain J8380_13310 PF08448 PAS fold J8380_13320 PF12849 PBP superfamily domain J8380_13325 PF00072 Response regulator receiver domain J8380_13325 PF00486 Transcriptional regulatory protein, C terminal J8380_13330 PF13439 Glycosyltransferase Family 4 J8380_13330 PF00534 Glycosyl transferases group 1 J8380_13335 PF01569 PAP2 superfamily J8380_13345 PF00270 DEAD/DEAH box helicase J8380_13345 PF00271 Helicase conserved C-terminal domain J8380_13350 PF01928 CYTH domain J8380_13355 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J8380_13355 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J8380_13360 PF02504 Fatty acid synthesis protein J8380_13365 PF01783 Ribosomal L32p protein family J8380_13375 PF02545 Maf-like protein J8380_13390 PF08501 Shikimate dehydrogenase substrate binding domain J8380_13390 PF01488 Shikimate / quinate 5-dehydrogenase J8380_13390 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J8380_13395 PF00565 Staphylococcal nuclease homologue J8380_13405 PF01926 50S ribosome-binding GTPase J8380_13405 PF12631 MnmE helical domain J8380_13405 PF10396 GTP-binding protein TrmE N-terminus J8380_13430 PF07733 Bacterial DNA polymerase III alpha NTPase domain J8380_13430 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J8380_13430 PF14579 Helix-hairpin-helix motif J8380_13430 PF02811 PHP domain J8380_13430 PF01336 OB-fold nucleic acid binding domain J8380_13450 PF02463 RecF/RecN/SMC N terminal domain J8380_13470 PF01171 PP-loop family J8380_13470 PF11734 TilS substrate C-terminal domain J8380_13470 PF09179 TilS substrate binding domain J8380_13475 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J8380_13480 PF00970 Oxidoreductase FAD-binding domain J8380_13480 PF00175 Oxidoreductase NAD-binding domain J8380_13485 PF00085 Thioredoxin J8380_13495 PF00800 Prephenate dehydratase J8380_13495 PF01842 ACT domain J8380_13495 PF01817 Chorismate mutase type II J8380_13500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J8380_13500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J8380_13500 PF01842 ACT domain J8380_13505 PF00266 Aminotransferase class-V J8380_13510 PF03989 DNA gyrase C-terminal domain, beta-propeller J8380_13510 PF00521 DNA gyrase/topoisomerase IV, subunit A J8380_13515 PF00270 DEAD/DEAH box helicase J8380_13515 PF00271 Helicase conserved C-terminal domain J8380_13515 PF17191 RecG wedge domain J8380_13520 PF00141 Peroxidase J8380_13540 PF03150 Di-haem cytochrome c peroxidase J8380_13545 PF03150 Di-haem cytochrome c peroxidase J8380_13550 PF03150 Di-haem cytochrome c peroxidase J8380_13555 PF00210 Ferritin-like domain J8380_13560 PF00210 Ferritin-like domain J8380_13610 PF00403 Heavy-metal-associated domain J8380_13650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_13650 PF03466 LysR substrate binding domain J8380_13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_13655 PF03466 LysR substrate binding domain J8380_13680 PF01548 Transposase J8380_13680 PF02371 Transposase IS116/IS110/IS902 family J8380_13740 PF05816 Toxic anion resistance protein (TelA) J8380_13765 PF00877 NlpC/P60 family J8380_13770 PF01476 LysM domain J8380_13785 PF01420 Type I restriction modification DNA specificity domain J8380_13790 PF02384 N-6 DNA Methylase J8380_13795 PF08463 EcoEI R protein C-terminal J8380_13795 PF04851 Type III restriction enzyme, res subunit J8380_13795 PF00271 Helicase conserved C-terminal domain J8380_13795 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J8380_13810 PF14403 Circularly permuted ATP-grasp type 2 J8380_13820 PF00149 Calcineurin-like phosphoesterase J8380_13825 PF01926 50S ribosome-binding GTPase J8380_13825 PF06071 Protein of unknown function (DUF933) J8380_13830 PF01195 Peptidyl-tRNA hydrolase J8380_13835 PF14693 Ribosomal protein TL5, C-terminal domain J8380_13835 PF01386 Ribosomal L25p family J8380_13840 PF14572 Phosphoribosyl synthetase-associated domain J8380_13840 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J8380_13855 PF08544 GHMP kinases C terminal J8380_13855 PF00288 GHMP kinases N terminal domain J8380_13860 PF03550 Outer membrane lipoprotein LolB J8380_13870 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J8380_13870 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J8380_13870 PF01488 Shikimate / quinate 5-dehydrogenase J8380_13875 PF00472 RF-1 domain J8380_13875 PF03462 PCRF domain J8380_13880 PF17827 PrmC N-terminal domain J8380_13880 PF13847 Methyltransferase domain J8380_13885 PF05567 Neisseria PilC beta-propeller domain J8380_13890 PF05567 Neisseria PilC beta-propeller domain J8380_13915 PF00994 Probable molybdopterin binding domain J8380_13920 PF01435 Peptidase family M48 J8380_13925 PF03989 DNA gyrase C-terminal domain, beta-propeller J8380_13925 PF00521 DNA gyrase/topoisomerase IV, subunit A J8380_13935 PF00586 AIR synthase related protein, N-terminal domain J8380_13935 PF02769 AIR synthase related protein, C-terminal domain J8380_13940 PF00551 Formyl transferase J8380_13945 PF06865 Pyrimidine/purine nucleoside phosphorylase J8380_13950 PF01523 Putative modulator of DNA gyrase J8380_13955 PF01523 Putative modulator of DNA gyrase J8380_13960 PF00795 Carbon-nitrogen hydrolase J8380_13970 PF10150 Ribonuclease E/G family J8380_13970 PF00575 S1 RNA binding domain J8380_13975 PF02545 Maf-like protein J8380_13980 PF02590 Predicted SPOUT methyltransferase J8380_13990 PF01467 Cytidylyltransferase-like J8380_14000 PF07687 Peptidase dimerisation domain J8380_14000 PF01546 Peptidase family M20/M25/M40 J8380_14005 PF00180 Isocitrate/isopropylmalate dehydrogenase J8380_14015 PF05681 Fumarate hydratase (Fumerase) J8380_14015 PF05683 Fumarase C-terminus J8380_14020 PF00005 ABC transporter J8380_14020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8380_14025 PF01008 Initiation factor 2 subunit family J8380_14030 PF01979 Amidohydrolase family J8380_14050 PF08003 Protein of unknown function (DUF1698) J8380_14055 PF13649 Methyltransferase domain J8380_14065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_14065 PF00183 Hsp90 protein J8380_14075 PF05099 Tellurite resistance protein TerB J8380_14085 PF02342 TerD domain J8380_14090 PF02342 TerD domain J8380_14095 PF02342 TerD domain J8380_14100 PF02342 TerD domain J8380_14110 PF13180 PDZ domain J8380_14135 PF15608 PELOTA RNA binding domain J8380_14135 PF11202 Phosphoribosyl transferase (PRTase) J8380_14155 PF02310 B12 binding domain J8380_14155 PF02965 Vitamin B12 dependent methionine synthase, activation domain J8380_14155 PF00809 Pterin binding enzyme J8380_14155 PF02607 B12 binding domain J8380_14155 PF02574 Homocysteine S-methyltransferase J8380_14180 PF00216 Bacterial DNA-binding protein J8380_14185 PF03483 B3/4 domain J8380_14185 PF03147 Ferredoxin-fold anticodon binding domain J8380_14185 PF01588 Putative tRNA binding domain J8380_14185 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J8380_14185 PF03484 tRNA synthetase B5 domain J8380_14190 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J8380_14190 PF01409 tRNA synthetases class II core domain (F) J8380_14195 PF00453 Ribosomal protein L20 J8380_14200 PF01632 Ribosomal protein L35 J8380_14205 PF00707 Translation initiation factor IF-3, C-terminal domain J8380_14205 PF05198 Translation initiation factor IF-3, N-terminal domain J8380_14210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J8380_14210 PF02824 TGS domain J8380_14210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J8380_14210 PF03129 Anticodon binding domain J8380_14220 PF00270 DEAD/DEAH box helicase J8380_14220 PF13749 Putative ATP-dependent DNA helicase recG C-terminal J8380_14220 PF17191 RecG wedge domain J8380_14235 PF01061 ABC-2 type transporter J8380_14240 PF00005 ABC transporter J8380_14250 PF05159 Capsule polysaccharide biosynthesis protein J8380_14255 PF02403 Seryl-tRNA synthetase N-terminal domain J8380_14255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J8380_14260 PF01565 FAD binding domain J8380_14260 PF02913 FAD linked oxidases, C-terminal domain J8380_14265 PF01565 FAD binding domain J8380_14270 PF02754 Cysteine-rich domain J8380_14270 PF13183 4Fe-4S dicluster domain J8380_14275 PF01702 Queuine tRNA-ribosyltransferase J8380_14285 PF03781 Sulfatase-modifying factor enzyme 1 J8380_14310 PF00561 alpha/beta hydrolase fold J8380_14320 PF02803 Thiolase, C-terminal domain J8380_14320 PF00108 Thiolase, N-terminal domain J8380_14325 PF00106 short chain dehydrogenase J8380_14330 PF05233 PHB accumulation regulatory domain J8380_14330 PF07879 PHB/PHA accumulation regulator DNA-binding domain J8380_14335 PF13180 PDZ domain J8380_14355 PF00334 Nucleoside diphosphate kinase J8380_14360 PF04055 Radical SAM superfamily J8380_14375 PF03129 Anticodon binding domain J8380_14375 PF13393 Histidyl-tRNA synthetase J8380_14385 PF13360 PQQ-like domain J8380_14400 PF02885 Glycosyl transferase family, helical bundle domain J8380_14400 PF00591 Glycosyl transferase family, a/b domain J8380_14405 PF00218 Indole-3-glycerol phosphate synthase J8380_14410 PF01790 Prolipoprotein diacylglyceryl transferase J8380_14415 PF00303 Thymidylate synthase J8380_14420 PF04204 Homoserine O-succinyltransferase J8380_14430 PF17961 Bacterial Ig domain J8380_14430 PF10425 C-terminus of bacterial fibrinogen-binding adhesin J8380_14430 PF17210 SdrD B-like domain J8380_14430 PF04650 YSIRK type signal peptide J8380_14430 PF00746 LPXTG cell wall anchor motif J8380_14445 PF13545 Crp-like helix-turn-helix domain J8380_14445 PF00027 Cyclic nucleotide-binding domain J8380_14455 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J8380_14460 PF01743 Poly A polymerase head domain J8380_14460 PF12626 Polymerase A arginine-rich C-terminus J8380_14460 PF12627 Probable RNA and SrmB- binding site of polymerase A J8380_14465 PF00583 Acetyltransferase (GNAT) family J8380_14470 PF03167 Uracil DNA glycosylase superfamily J8380_14475 PF08502 LeuA allosteric (dimerisation) domain J8380_14475 PF00682 HMGL-like J8380_14480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8380_14480 PF00005 ABC transporter J8380_14485 PF02578 Multi-copper polyphenol oxidoreductase laccase J8380_14490 PF00490 Delta-aminolevulinic acid dehydratase J8380_14495 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J8380_14530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_14530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8380_14530 PF00072 Response regulator receiver domain J8380_14530 PF00512 His Kinase A (phospho-acceptor) domain J8380_14530 PF00672 HAMP domain J8380_14530 PF01627 Hpt domain J8380_14540 PF00986 DNA gyrase B subunit, carboxyl terminus J8380_14540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_14540 PF01751 Toprim domain J8380_14540 PF00204 DNA gyrase B J8380_14560 PF09334 tRNA synthetases class I (M) J8380_14560 PF01588 Putative tRNA binding domain J8380_14575 PF02151 UvrB/uvrC motif J8380_14575 PF12344 Ultra-violet resistance protein B J8380_14575 PF04851 Type III restriction enzyme, res subunit J8380_14575 PF00271 Helicase conserved C-terminal domain J8380_14575 PF17757 UvrB interaction domain J8380_14585 PF03466 LysR substrate binding domain J8380_14585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_14590 PF03597 Cytochrome oxidase maturation protein cbb3-type J8380_14595 PF00403 Heavy-metal-associated domain J8380_14605 PF13746 4Fe-4S dicluster domain J8380_14605 PF12801 4Fe-4S binding domain J8380_14605 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J8380_14610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J8380_14610 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J8380_14625 PF00115 Cytochrome C and Quinol oxidase polypeptide I J8380_14630 PF01219 Prokaryotic diacylglycerol kinase J8380_14660 PF00815 Histidinol dehydrogenase J8380_14665 PF00793 DAHP synthetase I family J8380_14670 PF01634 ATP phosphoribosyltransferase J8380_14675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J8380_14700 PF08501 Shikimate dehydrogenase substrate binding domain J8380_14700 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J8380_14700 PF01488 Shikimate / quinate 5-dehydrogenase J8380_14705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J8380_14705 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J8380_14705 PF02770 Acyl-CoA dehydrogenase, middle domain J8380_14750 PF00291 Pyridoxal-phosphate dependent enzyme J8380_14760 PF00145 C-5 cytosine-specific DNA methylase J8380_14760 PF01381 Helix-turn-helix J8380_14765 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J8380_14765 PF00400 WD domain, G-beta repeat J8380_14775 PF00291 Pyridoxal-phosphate dependent enzyme J8380_14780 PF00690 Cation transporter/ATPase, N-terminus J8380_14780 PF00689 Cation transporting ATPase, C-terminus J8380_14785 PF00999 Sodium/hydrogen exchanger family J8380_14785 PF02254 TrkA-N domain J8380_14790 PF00582 Universal stress protein family J8380_14795 PF01594 AI-2E family transporter J8380_14800 PF01699 Sodium/calcium exchanger protein J8380_14805 PF07549 SecD/SecF GG Motif J8380_14805 PF02355 Protein export membrane protein J8380_14810 PF02355 Protein export membrane protein J8380_14810 PF07549 SecD/SecF GG Motif J8380_14810 PF13721 SecD export protein N-terminal TM region J8380_14815 PF02699 Preprotein translocase subunit J8380_14820 PF00152 tRNA synthetases class II (D, K and N) J8380_14825 PF08207 Elongation factor P (EF-P) KOW-like domain J8380_14825 PF01132 Elongation factor P (EF-P) OB domain J8380_14825 PF09285 Elongation factor P, C-terminal J8380_14840 PF00814 Glycoprotease family J8380_14845 PF03781 Sulfatase-modifying factor enzyme 1 J8380_14855 PF00266 Aminotransferase class-V J8380_14860 PF12161 HsdM N-terminal domain J8380_14860 PF02384 N-6 DNA Methylase J8380_14880 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) J8380_14880 PF00271 Helicase conserved C-terminal domain J8380_14880 PF04851 Type III restriction enzyme, res subunit J8380_14880 PF08463 EcoEI R protein C-terminal J8380_14885 PF03109 ABC1 family J8380_14915 PF13356 Arm DNA-binding domain J8380_14915 PF14659 Phage integrase, N-terminal SAM-like domain J8380_14915 PF00589 Phage integrase family J8380_14920 PF01527 Transposase J8380_14925 PF13333 Integrase core domain J8380_14925 PF00665 Integrase core domain J8380_14925 PF13276 HTH-like domain J8380_14930 PF03129 Anticodon binding domain J8380_14930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J8380_14930 PF04073 Aminoacyl-tRNA editing domain J8380_14935 PF01808 AICARFT/IMPCHase bienzyme J8380_14935 PF02142 MGS-like domain J8380_14950 PF03781 Sulfatase-modifying factor enzyme 1 J8380_14960 PF03781 Sulfatase-modifying factor enzyme 1 J8380_14980 PF03781 Sulfatase-modifying factor enzyme 1 J8380_14995 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J8380_14995 PF00384 Molybdopterin oxidoreductase J8380_14995 PF01568 Molydopterin dinucleotide binding domain J8380_14995 PF10518 TAT (twin-arginine translocation) pathway signal sequence J8380_15000 PF13247 4Fe-4S dicluster domain J8380_15020 PF00578 AhpC/TSA family J8380_15025 PF10417 C-terminal domain of 1-Cys peroxiredoxin J8380_15025 PF00578 AhpC/TSA family J8380_15040 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J8380_15040 PF00355 Rieske [2Fe-2S] domain J8380_15060 PF10518 TAT (twin-arginine translocation) pathway signal sequence J8380_15060 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding J8380_15060 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_15065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J8380_15070 PF12823 Domain of unknown function (DUF3817) J8380_15090 PF04377 Arginine-tRNA-protein transferase, C terminus J8380_15090 PF04376 Arginine-tRNA-protein transferase, N terminus J8380_15095 PF13545 Crp-like helix-turn-helix domain J8380_15095 PF00027 Cyclic nucleotide-binding domain J8380_15100 PF00436 Single-strand binding protein family J8380_15105 PF07690 Major Facilitator Superfamily J8380_15110 PF08349 Protein of unknown function (DUF1722) J8380_15115 PF00924 Mechanosensitive ion channel J8380_15115 PF12795 Mechanosensitive ion channel porin domain J8380_15115 PF12794 Mechanosensitive ion channel inner membrane domain 1 J8380_15130 PF14437 MafB19-like deaminase J8380_15140 PF00583 Acetyltransferase (GNAT) family J8380_15150 PF01053 Cys/Met metabolism PLP-dependent enzyme J8380_15155 PF04371 Porphyromonas-type peptidyl-arginine deiminase J8380_15160 PF00795 Carbon-nitrogen hydrolase J8380_15165 PF02540 NAD synthase J8380_15165 PF00117 Glutamine amidotransferase class-I J8380_15165 PF00958 GMP synthase C terminal domain J8380_15170 PF00571 CBS domain J8380_15170 PF00478 IMP dehydrogenase / GMP reductase domain J8380_15180 PF02601 Exonuclease VII, large subunit J8380_15180 PF13742 OB-fold nucleic acid binding domain J8380_15200 PF00270 DEAD/DEAH box helicase J8380_15200 PF03880 DbpA RNA binding domain J8380_15200 PF00271 Helicase conserved C-terminal domain J8380_15205 PF00255 Glutathione peroxidase J8380_15220 PF03330 Lytic transglycolase J8380_15225 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J8380_15230 PF05016 ParE toxin of type II toxin-antitoxin system, parDE J8380_15235 PF03781 Sulfatase-modifying factor enzyme 1 J8380_15240 PF05378 Hydantoinase/oxoprolinase N-terminal region J8380_15240 PF01968 Hydantoinase/oxoprolinase J8380_15255 PF06470 SMC proteins Flexible Hinge Domain J8380_15255 PF02463 RecF/RecN/SMC N terminal domain J8380_15260 PF01555 DNA methylase J8380_15260 PF18273 Type III R-M EcoP15I C-terminal domain J8380_15280 PF02899 Phage integrase, N-terminal SAM-like domain J8380_15280 PF00589 Phage integrase family J8380_15290 PF00294 pfkB family carbohydrate kinase J8380_15295 PF00089 Trypsin J8380_15305 PF00291 Pyridoxal-phosphate dependent enzyme J8380_15310 PF01648 4'-phosphopantetheinyl transferase superfamily J8380_15315 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J8380_15320 PF11967 Recombination protein O N terminal J8380_15320 PF02565 Recombination protein O C terminal J8380_15325 PF07650 KH domain J8380_15325 PF01926 50S ribosome-binding GTPase J8380_15330 PF14622 Ribonuclease-III-like J8380_15330 PF00035 Double-stranded RNA binding motif J8380_15340 PF10502 Signal peptidase, peptidase S26 J8380_15345 PF00009 Elongation factor Tu GTP binding domain J8380_15345 PF00679 Elongation factor G C-terminus J8380_15345 PF06421 GTP-binding protein LepA C-terminus J8380_15345 PF03144 Elongation factor Tu domain 2 J8380_15355 PF13180 PDZ domain J8380_15375 PF04542 Sigma-70 region 2 J8380_15375 PF08281 Sigma-70, region 4 J8380_15380 PF13276 HTH-like domain J8380_15380 PF00665 Integrase core domain J8380_15380 PF13333 Integrase core domain J8380_15390 PF01527 Transposase J8380_15405 PF01930 Domain of unknown function DUF83 J8380_15405 PF01867 CRISPR associated protein Cas1 J8380_15450 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J8380_15455 PF01867 CRISPR associated protein Cas1 J8380_15460 PF09827 CRISPR associated protein Cas2 J8380_15465 PF09827 CRISPR associated protein Cas2 J8380_15505 PF07916 TraG-like protein, N-terminal region J8380_15540 PF17674 HHH domain J8380_15540 PF16921 Tex protein YqgF-like domain J8380_15540 PF00575 S1 RNA binding domain J8380_15540 PF09371 Tex-like protein N-terminal domain J8380_15560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8380_15560 PF00672 HAMP domain J8380_15560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_15560 PF00512 His Kinase A (phospho-acceptor) domain J8380_15560 PF01627 Hpt domain J8380_15560 PF00072 Response regulator receiver domain J8380_15570 PF00750 tRNA synthetases class I (R) J8380_15570 PF05746 DALR anticodon binding domain J8380_15570 PF03485 Arginyl tRNA synthetase N terminal domain J8380_15585 PF00270 DEAD/DEAH box helicase J8380_15585 PF00271 Helicase conserved C-terminal domain J8380_15585 PF03880 DbpA RNA binding domain J8380_15600 PF05746 DALR anticodon binding domain J8380_15600 PF03485 Arginyl tRNA synthetase N terminal domain J8380_15600 PF00750 tRNA synthetases class I (R) J8380_15615 PF03880 DbpA RNA binding domain J8380_15615 PF00270 DEAD/DEAH box helicase J8380_15615 PF00271 Helicase conserved C-terminal domain J8380_15620 PF00488 MutS domain V J8380_15620 PF01713 Smr domain J8380_15625 PF01975 Survival protein SurE J8380_15635 PF01551 Peptidase family M23 J8380_15635 PF01476 LysM domain J8380_15640 PF00578 AhpC/TSA family J8380_15675 PF01794 Ferric reductase like transmembrane component J8380_15680 PF00174 Oxidoreductase molybdopterin binding domain J8380_15715 PF01494 FAD binding domain J8380_15720 PF02779 Transketolase, pyrimidine binding domain J8380_15720 PF02780 Transketolase, C-terminal domain J8380_15720 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J8380_15725 PF00348 Polyprenyl synthetase J8380_15730 PF02609 Exonuclease VII small subunit J8380_15740 PF08461 Ribonuclease R winged-helix domain J8380_15740 PF08206 Ribonuclease B OB domain J8380_15740 PF00773 RNB domain J8380_15740 PF00575 S1 RNA binding domain J8380_15740 PF17876 Cold shock domain J8380_15745 PF00588 SpoU rRNA Methylase family J8380_15745 PF08032 RNA 2'-O ribose methyltransferase substrate binding J8380_15760 PF02646 RmuC family J8380_15770 PF03776 Septum formation topological specificity factor MinE J8380_15775 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J8380_15780 PF05209 Septum formation inhibitor MinC, N-terminal domain J8380_15780 PF03775 Septum formation inhibitor MinC, C-terminal domain J8380_15790 PF02559 CarD-like/TRCF domain J8380_15790 PF00271 Helicase conserved C-terminal domain J8380_15790 PF03461 TRCF domain J8380_15790 PF17757 UvrB interaction domain J8380_15790 PF00270 DEAD/DEAH box helicase J8380_15795 PF00155 Aminotransferase class I and II J8380_15795 PF00392 Bacterial regulatory proteins, gntR family J8380_15800 PF00117 Glutamine amidotransferase class-I J8380_15800 PF00958 GMP synthase C terminal domain J8380_15800 PF02540 NAD synthase J8380_15805 PF03475 3-alpha domain J8380_15805 PF03473 MOSC domain J8380_15815 PF11583 P-aminobenzoate N-oxygenase AurF J8380_15820 PF18113 Rubredoxin binding C-terminal domain J8380_15820 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8380_15825 PF08892 YqcI/YcgG family J8380_15830 PF13520 Amino acid permease J8380_15835 PF00202 Aminotransferase class-III J8380_15840 PF03461 TRCF domain J8380_15840 PF00270 DEAD/DEAH box helicase J8380_15840 PF00271 Helicase conserved C-terminal domain J8380_15840 PF02559 CarD-like/TRCF domain J8380_15840 PF17757 UvrB interaction domain J8380_15895 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system J8380_15930 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA J8380_15940 PF01850 PIN domain J8380_15950 PF00166 Chaperonin 10 Kd subunit J8380_15955 PF04186 FxsA cytoplasmic membrane protein J8380_15960 PF00563 EAL domain J8380_15960 PF00990 Diguanylate cyclase, GGDEF domain J8380_15960 PF08448 PAS fold J8380_15965 PF00816 H-NS histone family J8380_15970 PF02683 Cytochrome C biogenesis protein transmembrane region J8380_15970 PF11412 Disulphide bond corrector protein DsbC J8380_15985 PF00308 Bacterial dnaA protein J8380_15985 PF11638 DnaA N-terminal domain J8380_15985 PF08299 Bacterial dnaA protein helix-turn-helix J8380_15990 PF01594 AI-2E family transporter J8380_15995 PF01066 CDP-alcohol phosphatidyltransferase J8380_16000 PF00691 OmpA family J8380_16000 PF13488 Glycine zipper J8380_16005 PF00291 Pyridoxal-phosphate dependent enzyme J8380_16005 PF14821 Threonine synthase N terminus J8380_16010 PF00742 Homoserine dehydrogenase J8380_16010 PF01842 ACT domain J8380_16010 PF03447 Homoserine dehydrogenase, NAD binding domain J8380_16025 PF04545 Sigma-70, region 4 J8380_16025 PF00140 Sigma-70 factor, region 1.2 J8380_16025 PF04542 Sigma-70 region 2 J8380_16025 PF04539 Sigma-70 region 3 J8380_16050 PF04228 Putative neutral zinc metallopeptidase J8380_16055 PF00881 Nitroreductase family J8380_16075 PF02348 Cytidylyltransferase J8380_16080 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J8380_16080 PF03966 Trm112p-like protein J8380_16085 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J8380_16095 PF02472 Biopolymer transport protein ExbD/TolR J8380_16100 PF01618 MotA/TolQ/ExbB proton channel family J8380_16105 PF13089 Polyphosphate kinase N-terminal domain J8380_16105 PF17941 Polyphosphate kinase C-terminal domain 1 J8380_16105 PF13090 Polyphosphate kinase C-terminal domain 2 J8380_16105 PF02503 Polyphosphate kinase middle domain J8380_16110 PF01464 Transglycosylase SLT domain J8380_16115 PF14602 Hexapeptide repeat of succinyl-transferase J8380_16115 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J8380_16115 PF00132 Bacterial transferase hexapeptide (six repeats) J8380_16120 PF00155 Aminotransferase class I and II J8380_16125 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J8380_16140 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J8380_16140 PF01266 FAD dependent oxidoreductase J8380_16150 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J8380_16155 PF02153 Prephenate dehydrogenase J8380_16155 PF01842 ACT domain J8380_16160 PF00155 Aminotransferase class I and II J8380_16165 PF00889 Elongation factor TS J8380_16170 PF00318 Ribosomal protein S2 J8380_16175 PF00557 Metallopeptidase family M24 J8380_16180 PF08335 GlnD PII-uridylyltransferase J8380_16180 PF01909 Nucleotidyltransferase domain J8380_16180 PF01842 ACT domain J8380_16180 PF01966 HD domain J8380_16185 PF00013 KH domain J8380_16185 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J8380_16185 PF01138 3' exoribonuclease family, domain 1 J8380_16185 PF03725 3' exoribonuclease family, domain 2 J8380_16185 PF00575 S1 RNA binding domain J8380_16190 PF00312 Ribosomal protein S15 J8380_16195 PF01641 SelR domain J8380_16205 PF01322 Cytochrome C' J8380_16230 PF03781 Sulfatase-modifying factor enzyme 1 J8380_16270 PF04143 Sulphur transport J8380_16280 PF05173 Dihydrodipicolinate reductase, C-terminus J8380_16280 PF01113 Dihydrodipicolinate reductase, N-terminus J8380_16285 PF00226 DnaJ domain J8380_16285 PF01556 DnaJ C terminal domain J8380_16285 PF00684 DnaJ central domain J8380_16290 PF00012 Hsp70 protein J8380_16295 PF01025 GrpE J8380_16310 PF00571 CBS domain J8380_16310 PF01380 SIS domain J8380_16330 PF00005 ABC transporter J8380_16330 PF12399 Branched-chain amino acid ATP-binding cassette transporter J8380_16335 PF04552 Sigma-54, DNA binding domain J8380_16335 PF04963 Sigma-54 factor, core binding domain J8380_16335 PF00309 Sigma-54 factor, Activator interacting domain (AID) J8380_16340 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J8380_16345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J8380_16350 PF03668 P-loop ATPase protein family J8380_16355 PF01544 CorA-like Mg2+ transporter protein J8380_16360 PF13406 Transglycosylase SLT domain J8380_16375 PF04293 SpoVR like protein J8380_16380 PF04285 Protein of unknown function (DUF444) J8380_16385 PF08298 PrkA AAA domain J8380_16385 PF06798 PrkA serine protein kinase C-terminal domain J8380_16395 PF01979 Amidohydrolase family J8380_16400 PF00186 Dihydrofolate reductase J8380_16405 PF04386 Stringent starvation protein B J8380_16410 PF00043 Glutathione S-transferase, C-terminal domain J8380_16410 PF02798 Glutathione S-transferase, N-terminal domain J8380_16415 PF02167 Cytochrome C1 family J8380_16420 PF00032 Cytochrome b(C-terminal)/b6/petD J8380_16420 PF00033 Cytochrome b/b6/petB J8380_16425 PF00355 Rieske [2Fe-2S] domain J8380_16425 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J8380_16430 PF01784 NIF3 (NGG1p interacting factor 3) J8380_16435 PF00155 Aminotransferase class I and II J8380_16450 PF00171 Aldehyde dehydrogenase family J8380_16460 PF03971 Monomeric isocitrate dehydrogenase J8380_16465 PF13406 Transglycosylase SLT domain J8380_16470 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J8380_16470 PF00749 tRNA synthetases class I (E and Q), catalytic domain J8380_16480 PF00206 Lyase J8380_16480 PF08328 Adenylosuccinate lyase C-terminal J8380_16485 PF08007 Cupin superfamily protein J8380_16500 PF00486 Transcriptional regulatory protein, C terminal J8380_16500 PF00072 Response regulator receiver domain J8380_16505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_16510 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J8380_16510 PF00207 Alpha-2-macroglobulin family J8380_16510 PF07703 Alpha-2-macroglobulin bait region domain J8380_16510 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J8380_16510 PF17962 Bacterial macroglobulin domain 6 J8380_16510 PF01835 MG2 domain J8380_16510 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J8380_16510 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J8380_16530 PF00478 IMP dehydrogenase / GMP reductase domain J8380_16530 PF00571 CBS domain J8380_16535 PF00749 tRNA synthetases class I (E and Q), catalytic domain J8380_16540 PF04608 Phosphatidylglycerophosphatase A J8380_16550 PF13411 MerR HTH family regulatory protein J8380_16555 PF03441 FAD binding domain of DNA photolyase J8380_16555 PF00875 DNA photolyase J8380_16560 PF00795 Carbon-nitrogen hydrolase J8380_16560 PF00583 Acetyltransferase (GNAT) family J8380_16565 PF13173 AAA domain J8380_16565 PF13635 Domain of unknown function (DUF4143) J8380_16570 PF00472 RF-1 domain J8380_16575 PF01263 Aldose 1-epimerase J8380_16600 PF07726 ATPase family associated with various cellular activities (AAA) J8380_16600 PF17863 AAA lid domain J8380_16615 PF01741 Large-conductance mechanosensitive channel, MscL J8380_16620 PF06123 Inner membrane protein CreD J8380_16625 PF00271 Helicase conserved C-terminal domain J8380_16625 PF00270 DEAD/DEAH box helicase J8380_16630 PF01293 Phosphoenolpyruvate carboxykinase J8380_16645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8380_16650 PF00528 Binding-protein-dependent transport system inner membrane component J8380_16655 PF12911 N-terminal TM domain of oligopeptide transport permease C J8380_16655 PF00528 Binding-protein-dependent transport system inner membrane component J8380_16660 PF10458 Valyl tRNA synthetase tRNA binding arm J8380_16660 PF00133 tRNA synthetases class I (I, L, M and V) J8380_16660 PF08264 Anticodon-binding domain of tRNA J8380_16670 PF01593 Flavin containing amine oxidoreductase J8380_16675 PF00145 C-5 cytosine-specific DNA methylase J8380_16675 PF12728 Helix-turn-helix domain J8380_16695 PF07683 Cobalamin synthesis protein cobW C-terminal domain J8380_16695 PF02492 CobW/HypB/UreG, nucleotide-binding domain J8380_16710 PF03631 Virulence factor BrkB J8380_16730 PF13419 Haloacid dehalogenase-like hydrolase J8380_16750 PF00591 Glycosyl transferase family, a/b domain J8380_16750 PF02885 Glycosyl transferase family, helical bundle domain J8380_16760 PF02261 Aspartate decarboxylase J8380_16765 PF02569 Pantoate-beta-alanine ligase J8380_16770 PF02548 Ketopantoate hydroxymethyltransferase J8380_16775 PF04079 Segregation and condensation complex subunit ScpB J8380_16800 PF01850 PIN domain J8380_16810 PF04381 Putative exonuclease, RdgC J8380_16830 PF02082 Transcriptional regulator J8380_16850 PF00899 ThiF family J8380_16855 PF01557 Fumarylacetoacetate (FAA) hydrolase family J8380_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8380_16860 PF03466 LysR substrate binding domain J8380_16865 PF03459 TOBE domain J8380_16865 PF00005 ABC transporter J8380_16880 PF03458 UPF0126 domain J8380_16895 PF02661 Fic/DOC family J8380_16920 PF02599 Global regulator protein family J8380_16925 PF13840 ACT domain J8380_16925 PF01842 ACT domain J8380_16925 PF00696 Amino acid kinase family J8380_16930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J8380_16930 PF01411 tRNA synthetases class II (A) J8380_16930 PF02272 DHHA1 domain J8380_16935 PF02631 RecX family J8380_16955 PF00271 Helicase conserved C-terminal domain J8380_16955 PF00176 SNF2 family N-terminal domain J8380_16960 PF00271 Helicase conserved C-terminal domain J8380_16960 PF12419 SNF2 Helicase protein J8380_16960 PF00176 SNF2 family N-terminal domain J8380_16965 PF00561 alpha/beta hydrolase fold J8380_16965 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J8380_16970 PF02464 Competence-damaged protein J8380_16975 PF00145 C-5 cytosine-specific DNA methylase J8380_16980 PF01343 Peptidase family S49 J8380_16980 PF06965 Na+/H+ antiporter 1 J8380_16985 PF13419 Haloacid dehalogenase-like hydrolase J8380_16990 PF00849 RNA pseudouridylate synthase J8380_16990 PF01479 S4 domain J8380_16995 PF12111 Polyribonucleotide phosphorylase C terminal J8380_16995 PF10150 Ribonuclease E/G family J8380_16995 PF00575 S1 RNA binding domain J8380_17000 PF01451 Low molecular weight phosphotyrosine protein phosphatase J8380_17005 PF00132 Bacterial transferase hexapeptide (six repeats) J8380_17010 PF01351 Ribonuclease HII J8380_17025 PF02684 Lipid-A-disaccharide synthetase J8380_17030 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J8380_17030 PF00132 Bacterial transferase hexapeptide (six repeats) J8380_17035 PF07977 FabA-like domain J8380_17040 PF00132 Bacterial transferase hexapeptide (six repeats) J8380_17040 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J8380_17050 PF01103 Surface antigen J8380_17050 PF07244 Surface antigen variable number repeat J8380_17055 PF17820 PDZ domain J8380_17055 PF02163 Peptidase family M50 J8380_17060 PF13288 DXP reductoisomerase C-terminal domain J8380_17060 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J8380_17060 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J8380_17070 PF01255 Putative undecaprenyl diphosphate synthase J8380_17075 PF01765 Ribosome recycling factor J8380_17080 PF00696 Amino acid kinase family J8380_17085 PF05728 Uncharacterised protein family (UPF0227) J8380_17090 PF01628 HrcA protein C terminal domain J8380_17090 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J8380_17095 PF01513 ATP-NAD kinase J8380_17100 PF02463 RecF/RecN/SMC N terminal domain J8380_17110 PF00581 Rhodanese-like domain J8380_17115 PF00072 Response regulator receiver domain J8380_17115 PF00196 Bacterial regulatory proteins, luxR family J8380_17120 PF00672 HAMP domain J8380_17120 PF07730 Histidine kinase J8380_17120 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J8380_17120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_17125 PF01521 Iron-sulphur cluster biosynthesis J8380_17130 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J8380_17130 PF07685 CobB/CobQ-like glutamine amidotransferase domain J8380_17150 PF03781 Sulfatase-modifying factor enzyme 1 J8380_17160 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ J8380_17165 PF13538 UvrD-like helicase C-terminal domain J8380_17170 PF00483 Nucleotidyl transferase J8380_17200 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J8380_17200 PF01926 50S ribosome-binding GTPase J8380_17205 PF01925 Sulfite exporter TauE/SafE J8380_17215 PF13533 Biotin-lipoyl like J8380_17220 PF00873 AcrB/AcrD/AcrF family J8380_17250 PF01761 3-dehydroquinate synthase J8380_17255 PF01202 Shikimate kinase J8380_17260 PF11741 AMIN domain J8380_17260 PF00263 Bacterial type II and III secretion system protein J8380_17260 PF03958 Bacterial type II/III secretion system short domain J8380_17260 PF07660 Secretin and TonB N terminus short domain J8380_17265 PF04351 Pilus assembly protein, PilP J8380_17270 PF04350 Pilus assembly protein, PilO J8380_17280 PF11104 Type IV pilus assembly protein PilM; J8380_17285 PF00905 Penicillin binding protein transpeptidase domain J8380_17285 PF17092 Penicillin-binding protein OB-like domain J8380_17285 PF00912 Transglycosylase J8380_17295 PF01208 Uroporphyrinogen decarboxylase (URO-D) J8380_17305 PF01165 Ribosomal protein S21 J8380_17310 PF01475 Ferric uptake regulator family J8380_17315 PF04355 SmpA / OmlA family J8380_17325 PF03658 RnfH family Ubiquitin J8380_17330 PF03364 Polyketide cyclase / dehydrase and lipid transport J8380_17340 PF01416 tRNA pseudouridine synthase J8380_17350 PF02774 Semialdehyde dehydrogenase, dimerisation domain J8380_17350 PF01118 Semialdehyde dehydrogenase, NAD binding domain J8380_17355 PF00180 Isocitrate/isopropylmalate dehydrogenase J8380_17360 PF00694 Aconitase C-terminal domain J8380_17365 PF00330 Aconitase family (aconitate hydratase) J8380_17370 PF04650 YSIRK type signal peptide J8380_17370 PF17210 SdrD B-like domain J8380_17370 PF00746 LPXTG cell wall anchor motif J8380_17370 PF17961 Bacterial Ig domain J8380_17425 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J8380_17425 PF00400 WD domain, G-beta repeat J8380_17435 PF00929 Exonuclease J8380_17440 PF00075 RNase H J8380_17450 PF01476 LysM domain J8380_17450 PF01464 Transglycosylase SLT domain J8380_17455 PF16697 Inner membrane component of T3SS, cytoplasmic domain J8380_17460 PF01812 5-formyltetrahydrofolate cyclo-ligase family J8380_17475 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J8380_17495 PF04055 Radical SAM superfamily J8380_17495 PF01938 TRAM domain J8380_17495 PF00919 Uncharacterized protein family UPF0004 J8380_17500 PF13145 PPIC-type PPIASE domain J8380_17520 PF00216 Bacterial DNA-binding protein J8380_17525 PF00004 ATPase family associated with various cellular activities (AAA) J8380_17525 PF05362 Lon protease (S16) C-terminal proteolytic domain J8380_17525 PF02190 ATP-dependent protease La (LON) substrate-binding domain J8380_17530 PF07724 AAA domain (Cdc48 subfamily) J8380_17530 PF10431 C-terminal, D2-small domain, of ClpB protein J8380_17530 PF06689 ClpX C4-type zinc finger J8380_17535 PF00574 Clp protease J8380_17565 PF00486 Transcriptional regulatory protein, C terminal J8380_17565 PF00072 Response regulator receiver domain J8380_17585 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J8380_17585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8380_17590 PF01584 CheW-like domain J8380_17590 PF02895 Signal transducing histidine kinase, homodimeric domain J8380_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8380_17590 PF01627 Hpt domain J8380_17590 PF00072 Response regulator receiver domain J8380_17595 PF00486 Transcriptional regulatory protein, C terminal J8380_17595 PF00072 Response regulator receiver domain J8380_17625 PF00579 tRNA synthetases class I (W and Y) J8380_17630 PF01551 Peptidase family M23 J8380_17630 PF10145 Phage-related minor tail protein J8380_17630 PF01464 Transglycosylase SLT domain J8380_17635 PF04384 Iron-sulphur cluster assembly J8380_17640 PF00111 2Fe-2S iron-sulfur cluster binding domain J8380_17650 PF07743 HSCB C-terminal oligomerisation domain J8380_17655 PF01521 Iron-sulphur cluster biosynthesis J8380_17660 PF01592 NifU-like N terminal domain J8380_17665 PF00266 Aminotransferase class-V J8380_17670 PF02082 Transcriptional regulator J8380_17675 PF00579 tRNA synthetases class I (W and Y) J8380_17680 PF01464 Transglycosylase SLT domain J8380_17680 PF01551 Peptidase family M23 J8380_17680 PF10145 Phage-related minor tail protein J8380_17685 PF04384 Iron-sulphur cluster assembly J8380_17690 PF00111 2Fe-2S iron-sulfur cluster binding domain J8380_17695 PF00012 Hsp70 protein J8380_17700 PF07743 HSCB C-terminal oligomerisation domain J8380_17705 PF01521 Iron-sulphur cluster biosynthesis J8380_17715 PF00266 Aminotransferase class-V J8380_17720 PF02082 Transcriptional regulator