locus-tag class description HMY34_00015 PF07726 ATPase family associated with various cellular activities (AAA) HMY34_00015 PF17863 AAA lid domain HMY34_00025 PF02574 Homocysteine S-methyltransferase HMY34_00025 PF00809 Pterin binding enzyme HMY34_00025 PF02607 B12 binding domain HMY34_00025 PF02310 B12 binding domain HMY34_00025 PF02965 Vitamin B12 dependent methionine synthase, activation domain HMY34_00035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_00035 PF03466 LysR substrate binding domain HMY34_00040 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain HMY34_00040 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain HMY34_00045 PF08406 CbbQ/NirQ/NorQ C-terminal HMY34_00045 PF07728 AAA domain (dynein-related subfamily) HMY34_00050 PF00092 von Willebrand factor type A domain HMY34_00070 PF01906 Putative heavy-metal-binding HMY34_00075 PF08031 Berberine and berberine like HMY34_00075 PF01565 FAD binding domain HMY34_00085 PF13180 PDZ domain HMY34_00090 PF00072 Response regulator receiver domain HMY34_00090 PF00486 Transcriptional regulatory protein, C terminal HMY34_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_00095 PF00512 His Kinase A (phospho-acceptor) domain HMY34_00115 PF03459 TOBE domain HMY34_00115 PF00005 ABC transporter HMY34_00120 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_00130 PF03459 TOBE domain HMY34_00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_00135 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HMY34_00135 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HMY34_00150 PF00593 TonB dependent receptor HMY34_00150 PF07715 TonB-dependent Receptor Plug Domain HMY34_00155 PF03453 MoeA N-terminal region (domain I and II) HMY34_00155 PF00994 Probable molybdopterin binding domain HMY34_00155 PF03454 MoeA C-terminal region (domain IV) HMY34_00180 PF08274 PhnA Zinc-Ribbon HMY34_00180 PF03831 PhnA domain HMY34_00185 PF03458 UPF0126 domain HMY34_00190 PF16363 GDP-mannose 4,6 dehydratase HMY34_00205 PF00875 DNA photolyase HMY34_00205 PF03441 FAD binding domain of DNA photolyase HMY34_00210 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_00210 PF02190 ATP-dependent protease La (LON) substrate-binding domain HMY34_00210 PF05362 Lon protease (S16) C-terminal proteolytic domain HMY34_00220 PF03738 Glutathionylspermidine synthase preATP-grasp HMY34_00245 PF01594 AI-2E family transporter HMY34_00250 PF10091 Putative glucoamylase HMY34_00250 PF06165 Glycosyltransferase family 36 HMY34_00250 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain HMY34_00260 PF05532 CsbD-like HMY34_00280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HMY34_00285 PF02687 FtsX-like permease family HMY34_00285 PF12704 MacB-like periplasmic core domain HMY34_00290 PF00005 ABC transporter HMY34_00295 PF09820 Predicted AAA-ATPase HMY34_00295 PF08011 PD-(D/E)XK nuclease superfamily HMY34_00310 PF00689 Cation transporting ATPase, C-terminus HMY34_00310 PF00690 Cation transporter/ATPase, N-terminus HMY34_00330 PF00226 DnaJ domain HMY34_00330 PF01556 DnaJ C terminal domain HMY34_00345 PF00923 Transaldolase/Fructose-6-phosphate aldolase HMY34_00350 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase HMY34_00350 PF09363 XFP C-terminal domain HMY34_00350 PF09364 XFP N-terminal domain HMY34_00370 PF00069 Protein kinase domain HMY34_00370 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_00390 PF00069 Protein kinase domain HMY34_00390 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_00410 PF02540 NAD synthase HMY34_00410 PF00958 GMP synthase C terminal domain HMY34_00410 PF00117 Glutamine amidotransferase class-I HMY34_00415 PF00478 IMP dehydrogenase / GMP reductase domain HMY34_00415 PF00571 CBS domain HMY34_00425 PF02601 Exonuclease VII, large subunit HMY34_00425 PF13742 OB-fold nucleic acid binding domain HMY34_00440 PF00565 Staphylococcal nuclease homologue HMY34_00445 PF04055 Radical SAM superfamily HMY34_00450 PF01850 PIN domain HMY34_00455 PF07704 Rv0623-like transcription factor HMY34_00460 PF01132 Elongation factor P (EF-P) OB domain HMY34_00460 PF08207 Elongation factor P (EF-P) KOW-like domain HMY34_00460 PF09285 Elongation factor P, C-terminal HMY34_00465 PF00152 tRNA synthetases class II (D, K and N) HMY34_00470 PF02699 Preprotein translocase subunit HMY34_00475 PF02355 Protein export membrane protein HMY34_00475 PF07549 SecD/SecF GG Motif HMY34_00475 PF13721 SecD export protein N-terminal TM region HMY34_00480 PF07549 SecD/SecF GG Motif HMY34_00480 PF02355 Protein export membrane protein HMY34_00490 PF01209 ubiE/COQ5 methyltransferase family HMY34_00495 PF00578 AhpC/TSA family HMY34_00500 PF00883 Cytosol aminopeptidase family, catalytic domain HMY34_00500 PF02789 Cytosol aminopeptidase family, N-terminal domain HMY34_00515 PF08264 Anticodon-binding domain of tRNA HMY34_00515 PF00133 tRNA synthetases class I (I, L, M and V) HMY34_00515 PF10458 Valyl tRNA synthetase tRNA binding arm HMY34_00525 PF01555 DNA methylase HMY34_00530 PF09225 Restriction endonuclease PvuII HMY34_00540 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_00540 PF12002 MgsA AAA+ ATPase C terminal HMY34_00540 PF16193 AAA C-terminal domain HMY34_00545 PF03548 Outer membrane lipoprotein carrier protein LolA HMY34_00550 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HMY34_00550 PF17854 FtsK alpha domain HMY34_00550 PF09397 Ftsk gamma domain HMY34_00550 PF01580 FtsK/SpoIIIE family HMY34_00555 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_00560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HMY34_00565 PF04337 Protein of unknown function, DUF480 HMY34_00575 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HMY34_00575 PF11940 Domain of unknown function (DUF3458) Ig-like fold HMY34_00575 PF01433 Peptidase family M1 domain HMY34_00595 PF08241 Methyltransferase domain HMY34_00610 PF00561 alpha/beta hydrolase fold HMY34_00640 PF02660 Glycerol-3-phosphate acyltransferase HMY34_00645 PF02954 Bacterial regulatory protein, Fis family HMY34_00645 PF00072 Response regulator receiver domain HMY34_00645 PF00158 Sigma-54 interaction domain HMY34_00650 PF00512 His Kinase A (phospho-acceptor) domain HMY34_00650 PF00989 PAS fold HMY34_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_00655 PF00484 Carbonic anhydrase HMY34_00670 PF01740 STAS domain HMY34_00670 PF00916 Sulfate permease family HMY34_00675 PF01740 STAS domain HMY34_00675 PF00916 Sulfate permease family HMY34_00680 PF13538 UvrD-like helicase C-terminal domain HMY34_00685 PF00483 Nucleotidyl transferase HMY34_00700 PF00285 Citrate synthase, C-terminal domain HMY34_00705 PF00694 Aconitase C-terminal domain HMY34_00705 PF00330 Aconitase family (aconitate hydratase) HMY34_00710 PF04303 PrpF protein HMY34_00715 PF13193 AMP-binding enzyme C-terminal domain HMY34_00715 PF00501 AMP-binding enzyme HMY34_00715 PF16177 Acetyl-coenzyme A synthetase N-terminus HMY34_00725 PF12161 HsdM N-terminal domain HMY34_00725 PF02384 N-6 DNA Methylase HMY34_00765 PF02230 Phospholipase/Carboxylesterase HMY34_00785 PF02347 Glycine cleavage system P-protein HMY34_00790 PF01597 Glycine cleavage H-protein HMY34_00795 PF01571 Aminomethyltransferase folate-binding domain HMY34_00795 PF08669 Glycine cleavage T-protein C-terminal barrel domain HMY34_00815 PF02470 MlaD protein HMY34_00820 PF04403 Paraquat-inducible protein A HMY34_00825 PF04403 Paraquat-inducible protein A HMY34_00855 PF03466 LysR substrate binding domain HMY34_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_00860 PF05099 Tellurite resistance protein TerB HMY34_00870 PF02342 TerD domain HMY34_00875 PF02342 TerD domain HMY34_00880 PF02342 TerD domain HMY34_00885 PF02342 TerD domain HMY34_00895 PF13180 PDZ domain HMY34_00910 PF15608 PELOTA RNA binding domain HMY34_00910 PF11202 Phosphoribosyl transferase (PRTase) HMY34_00925 PF01614 Bacterial transcriptional regulator HMY34_00925 PF09339 IclR helix-turn-helix domain HMY34_00940 PF00266 Aminotransferase class-V HMY34_00950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) HMY34_00970 PF13406 Transglycosylase SLT domain HMY34_00980 PF05683 Fumarase C-terminus HMY34_00980 PF05681 Fumarate hydratase (Fumerase) HMY34_00985 PF00814 Glycoprotease family HMY34_00990 PF01699 Sodium/calcium exchanger protein HMY34_01005 PF06250 YhcG PDDEXK nuclease domain HMY34_01005 PF17761 DUF1016 N-terminal domain HMY34_01015 PF18766 SWI2/SNF2 ATPase HMY34_01015 PF11867 Domain of unknown function (DUF3387) HMY34_01015 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HMY34_01020 PF17191 RecG wedge domain HMY34_01020 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HMY34_01020 PF00270 DEAD/DEAH box helicase HMY34_01030 PF03334 Na+/H+ antiporter subunit HMY34_01035 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HMY34_01040 PF01899 Na+/H+ ion antiporter subunit HMY34_01045 PF00361 Proton-conducting membrane transporter HMY34_01050 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HMY34_01055 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HMY34_01055 PF13244 Domain of unknown function (DUF4040) HMY34_01055 PF00361 Proton-conducting membrane transporter HMY34_01055 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HMY34_01065 PF03969 AFG1-like ATPase HMY34_01070 PF16078 2-oxoglutarate dehydrogenase N-terminus HMY34_01070 PF00676 Dehydrogenase E1 component HMY34_01070 PF02779 Transketolase, pyrimidine binding domain HMY34_01070 PF16870 2-oxoglutarate dehydrogenase C-terminal HMY34_01080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HMY34_01090 PF00890 FAD binding domain HMY34_01090 PF02910 Fumarate reductase flavoprotein C-term HMY34_01095 PF13237 4Fe-4S dicluster domain HMY34_01095 PF13085 2Fe-2S iron-sulfur cluster binding domain HMY34_01100 PF03937 Flavinator of succinate dehydrogenase HMY34_01115 PF00691 OmpA family HMY34_01120 PF00829 Ribosomal prokaryotic L21 protein HMY34_01130 PF01066 CDP-alcohol phosphatidyltransferase HMY34_01135 PF01541 GIY-YIG catalytic domain HMY34_01135 PF02151 UvrB/uvrC motif HMY34_01135 PF08459 UvrC Helix-hairpin-helix N-terminal HMY34_01140 PF00082 Subtilase family HMY34_01150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HMY34_01155 PF00871 Acetokinase family HMY34_01160 PF07085 DRTGG domain HMY34_01160 PF01515 Phosphate acetyl/butaryl transferase HMY34_01185 PF09190 DALR domain HMY34_01185 PF01406 tRNA synthetases class I (C) catalytic domain HMY34_01210 PF00118 TCP-1/cpn60 chaperonin family HMY34_01215 PF00166 Chaperonin 10 Kd subunit HMY34_01220 PF04186 FxsA cytoplasmic membrane protein HMY34_01225 PF00990 Diguanylate cyclase, GGDEF domain HMY34_01225 PF08448 PAS fold HMY34_01225 PF00563 EAL domain HMY34_01230 PF00816 H-NS histone family HMY34_01235 PF02683 Cytochrome C biogenesis protein transmembrane region HMY34_01235 PF11412 Disulphide bond corrector protein DsbC HMY34_01250 PF00308 Bacterial dnaA protein HMY34_01255 PF01594 AI-2E family transporter HMY34_01260 PF01066 CDP-alcohol phosphatidyltransferase HMY34_01265 PF13488 Glycine zipper HMY34_01265 PF00691 OmpA family HMY34_01270 PF00849 RNA pseudouridylate synthase HMY34_01280 PF08461 Ribonuclease R winged-helix domain HMY34_01280 PF08206 Ribonuclease B OB domain HMY34_01280 PF00773 RNB domain HMY34_01280 PF00575 S1 RNA binding domain HMY34_01280 PF17876 Cold shock domain HMY34_01285 PF00588 SpoU rRNA Methylase family HMY34_01285 PF08032 RNA 2'-O ribose methyltransferase substrate binding HMY34_01300 PF02646 RmuC family HMY34_01305 PF13419 Haloacid dehalogenase-like hydrolase HMY34_01315 PF03776 Septum formation topological specificity factor MinE HMY34_01320 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HMY34_01325 PF03775 Septum formation inhibitor MinC, C-terminal domain HMY34_01325 PF05209 Septum formation inhibitor MinC, N-terminal domain HMY34_01335 PF02559 CarD-like/TRCF domain HMY34_01335 PF00270 DEAD/DEAH box helicase HMY34_01335 PF00271 Helicase conserved C-terminal domain HMY34_01335 PF03461 TRCF domain HMY34_01335 PF17757 UvrB interaction domain HMY34_01340 PF00155 Aminotransferase class I and II HMY34_01340 PF00392 Bacterial regulatory proteins, gntR family HMY34_01345 PF00117 Glutamine amidotransferase class-I HMY34_01345 PF00958 GMP synthase C terminal domain HMY34_01345 PF02540 NAD synthase HMY34_01350 PF03473 MOSC domain HMY34_01350 PF03475 3-alpha domain HMY34_01360 PF11583 P-aminobenzoate N-oxygenase AurF HMY34_01370 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_01370 PF18113 Rubredoxin binding C-terminal domain HMY34_01375 PF08892 YqcI/YcgG family HMY34_01380 PF13520 Amino acid permease HMY34_01385 PF00202 Aminotransferase class-III HMY34_01390 PF02559 CarD-like/TRCF domain HMY34_01390 PF00270 DEAD/DEAH box helicase HMY34_01390 PF00271 Helicase conserved C-terminal domain HMY34_01390 PF03461 TRCF domain HMY34_01390 PF17757 UvrB interaction domain HMY34_01405 PF02517 CPBP intramembrane metalloprotease HMY34_01500 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA HMY34_01510 PF13545 Crp-like helix-turn-helix domain HMY34_01510 PF00027 Cyclic nucleotide-binding domain HMY34_01515 PF00483 Nucleotidyl transferase HMY34_01530 PF02885 Glycosyl transferase family, helical bundle domain HMY34_01530 PF00591 Glycosyl transferase family, a/b domain HMY34_01540 PF02261 Aspartate decarboxylase HMY34_01545 PF02569 Pantoate-beta-alanine ligase HMY34_01550 PF02548 Ketopantoate hydroxymethyltransferase HMY34_01560 PF00753 Metallo-beta-lactamase superfamily HMY34_01560 PF12706 Beta-lactamase superfamily domain HMY34_01565 PF00483 Nucleotidyl transferase HMY34_01570 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HMY34_01575 PF04321 RmlD substrate binding domain HMY34_01580 PF16363 GDP-mannose 4,6 dehydratase HMY34_01610 PF00132 Bacterial transferase hexapeptide (six repeats) HMY34_01610 PF14602 Hexapeptide repeat of succinyl-transferase HMY34_01610 PF12464 Maltose acetyltransferase HMY34_01615 PF00535 Glycosyl transferase family 2 HMY34_01625 PF02397 Bacterial sugar transferase HMY34_01630 PF01757 Acyltransferase family HMY34_01635 PF13807 G-rich domain on putative tyrosine kinase HMY34_01635 PF13614 AAA domain HMY34_01635 PF02706 Chain length determinant protein HMY34_01655 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HMY34_01655 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HMY34_01660 PF10369 Small subunit of acetolactate synthase HMY34_01665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HMY34_01665 PF00205 Thiamine pyrophosphate enzyme, central domain HMY34_01665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HMY34_01680 PF08212 Lipocalin-like domain HMY34_01685 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HMY34_01715 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HMY34_01725 PF03109 ABC1 family HMY34_01730 PF02913 FAD linked oxidases, C-terminal domain HMY34_01730 PF01565 FAD binding domain HMY34_01735 PF01565 FAD binding domain HMY34_01740 PF02754 Cysteine-rich domain HMY34_01740 PF13183 4Fe-4S dicluster domain HMY34_01745 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HMY34_01750 PF04977 Septum formation initiator HMY34_01760 PF00113 Enolase, C-terminal TIM barrel domain HMY34_01760 PF03952 Enolase, N-terminal domain HMY34_01765 PF00793 DAHP synthetase I family HMY34_01770 PF00117 Glutamine amidotransferase class-I HMY34_01770 PF06418 CTP synthase N-terminus HMY34_01790 PF00924 Mechanosensitive ion channel HMY34_01790 PF12795 Mechanosensitive ion channel porin domain HMY34_01790 PF12794 Mechanosensitive ion channel inner membrane domain 1 HMY34_01810 PF00216 Bacterial DNA-binding protein HMY34_01815 PF01588 Putative tRNA binding domain HMY34_01815 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HMY34_01815 PF03484 tRNA synthetase B5 domain HMY34_01815 PF03483 B3/4 domain HMY34_01815 PF03147 Ferredoxin-fold anticodon binding domain HMY34_01820 PF01409 tRNA synthetases class II core domain (F) HMY34_01820 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HMY34_01825 PF00453 Ribosomal protein L20 HMY34_01830 PF01632 Ribosomal protein L35 HMY34_01835 PF00707 Translation initiation factor IF-3, C-terminal domain HMY34_01835 PF05198 Translation initiation factor IF-3, N-terminal domain HMY34_01840 PF02824 TGS domain HMY34_01840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HMY34_01840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HMY34_01840 PF03129 Anticodon binding domain HMY34_01850 PF00183 Hsp90 protein HMY34_01850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_01870 PF13426 PAS domain HMY34_01870 PF01740 STAS domain HMY34_01885 PF02687 FtsX-like permease family HMY34_01885 PF12704 MacB-like periplasmic core domain HMY34_01890 PF02687 FtsX-like permease family HMY34_01890 PF12704 MacB-like periplasmic core domain HMY34_01895 PF00005 ABC transporter HMY34_01905 PF03772 Competence protein HMY34_01905 PF00753 Metallo-beta-lactamase superfamily HMY34_01915 PF02142 MGS-like domain HMY34_01915 PF01808 AICARFT/IMPCHase bienzyme HMY34_01920 PF02796 Helix-turn-helix domain of resolvase HMY34_01920 PF00239 Resolvase, N terminal domain HMY34_01990 PF13356 Arm DNA-binding domain HMY34_01990 PF00589 Phage integrase family HMY34_02000 PF04377 Arginine-tRNA-protein transferase, C terminus HMY34_02000 PF04376 Arginine-tRNA-protein transferase, N terminus HMY34_02005 PF00027 Cyclic nucleotide-binding domain HMY34_02005 PF00325 Bacterial regulatory proteins, crp family HMY34_02025 PF12823 Domain of unknown function (DUF3817) HMY34_02045 PF02954 Bacterial regulatory protein, Fis family HMY34_02045 PF00072 Response regulator receiver domain HMY34_02045 PF00158 Sigma-54 interaction domain HMY34_02050 PF01965 DJ-1/PfpI family HMY34_02055 PF07715 TonB-dependent Receptor Plug Domain HMY34_02055 PF00593 TonB dependent receptor HMY34_02060 PF01654 Cytochrome bd terminal oxidase subunit I HMY34_02065 PF02322 Cytochrome bd terminal oxidase subunit II HMY34_02070 PF08173 Membrane bound YbgT-like protein HMY34_02080 PF07683 Cobalamin synthesis protein cobW C-terminal domain HMY34_02080 PF02492 CobW/HypB/UreG, nucleotide-binding domain HMY34_02085 PF01297 Zinc-uptake complex component A periplasmic HMY34_02090 PF00950 ABC 3 transport family HMY34_02095 PF00005 ABC transporter HMY34_02105 PF01502 Phosphoribosyl-AMP cyclohydrolase HMY34_02110 PF01258 Prokaryotic dksA/traR C4-type zinc finger HMY34_02115 PF02492 CobW/HypB/UreG, nucleotide-binding domain HMY34_02115 PF07683 Cobalamin synthesis protein cobW C-terminal domain HMY34_02120 PF01475 Ferric uptake regulator family HMY34_02150 PF03150 Di-haem cytochrome c peroxidase HMY34_02170 PF00271 Helicase conserved C-terminal domain HMY34_02170 PF00270 DEAD/DEAH box helicase HMY34_02175 PF01293 Phosphoenolpyruvate carboxykinase HMY34_02180 PF03880 DbpA RNA binding domain HMY34_02180 PF00270 DEAD/DEAH box helicase HMY34_02180 PF00271 Helicase conserved C-terminal domain HMY34_02185 PF07690 Major Facilitator Superfamily HMY34_02190 PF00436 Single-strand binding protein family HMY34_02200 PF04002 RadC-like JAB domain HMY34_02205 PF04127 DNA / pantothenate metabolism flavoprotein HMY34_02205 PF02441 Flavoprotein HMY34_02210 PF00692 dUTPase HMY34_02215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HMY34_02215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HMY34_02215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HMY34_02215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HMY34_02225 PF00696 Amino acid kinase family HMY34_02240 PF00586 AIR synthase related protein, N-terminal domain HMY34_02240 PF02769 AIR synthase related protein, C-terminal domain HMY34_02250 PF00933 Glycosyl hydrolase family 3 N terminal domain HMY34_02260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMY34_02265 PF00561 alpha/beta hydrolase fold HMY34_02265 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HMY34_02270 PF00588 SpoU rRNA Methylase family HMY34_02275 PF00005 ABC transporter HMY34_02280 PF00005 ABC transporter HMY34_02280 PF12399 Branched-chain amino acid ATP-binding cassette transporter HMY34_02285 PF02653 Branched-chain amino acid transport system / permease component HMY34_02285 PF11862 Domain of unknown function (DUF3382) HMY34_02290 PF02653 Branched-chain amino acid transport system / permease component HMY34_02295 PF13458 Periplasmic binding protein HMY34_02300 PF01668 SmpB protein HMY34_02310 PF00330 Aconitase family (aconitate hydratase) HMY34_02310 PF11791 Aconitate B N-terminal domain HMY34_02310 PF06434 Aconitate hydratase 2 N-terminus HMY34_02315 PF00285 Citrate synthase, C-terminal domain HMY34_02320 PF02629 CoA binding domain HMY34_02320 PF00549 CoA-ligase HMY34_02325 PF00549 CoA-ligase HMY34_02325 PF08442 ATP-grasp domain HMY34_02330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HMY34_02330 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_02335 PF02817 e3 binding domain HMY34_02335 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HMY34_02335 PF00364 Biotin-requiring enzyme HMY34_02340 PF01138 3' exoribonuclease family, domain 1 HMY34_02340 PF00575 S1 RNA binding domain HMY34_02340 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HMY34_02340 PF00013 KH domain HMY34_02340 PF03725 3' exoribonuclease family, domain 2 HMY34_02345 PF00312 Ribosomal protein S15 HMY34_02355 PF01322 Cytochrome C' HMY34_02360 PF04143 Sulphur transport HMY34_02370 PF05173 Dihydrodipicolinate reductase, C-terminus HMY34_02370 PF01113 Dihydrodipicolinate reductase, N-terminus HMY34_02375 PF00684 DnaJ central domain HMY34_02375 PF01556 DnaJ C terminal domain HMY34_02375 PF00226 DnaJ domain HMY34_02380 PF00012 Hsp70 protein HMY34_02385 PF01025 GrpE HMY34_02390 PF00085 Thioredoxin HMY34_02395 PF06097 Bacterial protein of unknown function (DUF945) HMY34_02400 PF03023 Lipid II flippase MurJ HMY34_02410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMY34_02410 PF00005 ABC transporter HMY34_02425 PF10119 Predicted methyltransferase regulatory domain HMY34_02425 PF13847 Methyltransferase domain HMY34_02435 PF02789 Cytosol aminopeptidase family, N-terminal domain HMY34_02435 PF00883 Cytosol aminopeptidase family, catalytic domain HMY34_02445 PF00334 Nucleoside diphosphate kinase HMY34_02450 PF04055 Radical SAM superfamily HMY34_02465 PF13393 Histidyl-tRNA synthetase HMY34_02465 PF03129 Anticodon binding domain HMY34_02470 PF09976 Tetratricopeptide repeat-like domain HMY34_02475 PF13360 PQQ-like domain HMY34_02485 PF00465 Iron-containing alcohol dehydrogenase HMY34_02490 PF06508 Queuosine biosynthesis protein QueC HMY34_02495 PF01751 Toprim domain HMY34_02495 PF00204 DNA gyrase B HMY34_02495 PF00986 DNA gyrase B subunit, carboxyl terminus HMY34_02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_02510 PF14437 MafB19-like deaminase HMY34_02515 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HMY34_02520 PF01850 PIN domain HMY34_02525 PF01171 PP-loop family HMY34_02525 PF09179 TilS substrate binding domain HMY34_02525 PF11734 TilS substrate C-terminal domain HMY34_02530 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HMY34_02535 PF00970 Oxidoreductase FAD-binding domain HMY34_02535 PF00175 Oxidoreductase NAD-binding domain HMY34_02550 PF02599 Global regulator protein family HMY34_02555 PF00696 Amino acid kinase family HMY34_02555 PF01842 ACT domain HMY34_02555 PF13840 ACT domain HMY34_02560 PF02272 DHHA1 domain HMY34_02560 PF01411 tRNA synthetases class II (A) HMY34_02560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HMY34_02565 PF02631 RecX family HMY34_02585 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HMY34_02585 PF00561 alpha/beta hydrolase fold HMY34_02590 PF02464 Competence-damaged protein HMY34_02595 PF01343 Peptidase family S49 HMY34_02595 PF06965 Na+/H+ antiporter 1 HMY34_02600 PF13419 Haloacid dehalogenase-like hydrolase HMY34_02605 PF00849 RNA pseudouridylate synthase HMY34_02605 PF01479 S4 domain HMY34_02610 PF12111 Polyribonucleotide phosphorylase C terminal HMY34_02610 PF10150 Ribonuclease E/G family HMY34_02610 PF00575 S1 RNA binding domain HMY34_02615 PF01451 Low molecular weight phosphotyrosine protein phosphatase HMY34_02620 PF00520 Ion transport protein HMY34_02620 PF00027 Cyclic nucleotide-binding domain HMY34_02640 PF13419 Haloacid dehalogenase-like hydrolase HMY34_02650 PF04079 Segregation and condensation complex subunit ScpB HMY34_02655 PF02616 Segregation and condensation protein ScpA HMY34_02660 PF00579 tRNA synthetases class I (W and Y) HMY34_02665 PF02163 Peptidase family M50 HMY34_02670 PF01300 Telomere recombination HMY34_02675 PF04279 Intracellular septation protein A HMY34_02680 PF03795 YCII-related domain HMY34_02690 PF01571 Aminomethyltransferase folate-binding domain HMY34_02695 PF00534 Glycosyl transferases group 1 HMY34_02705 PF13439 Glycosyltransferase Family 4 HMY34_02705 PF00534 Glycosyl transferases group 1 HMY34_02720 PF00534 Glycosyl transferases group 1 HMY34_02745 PF00005 ABC transporter HMY34_02750 PF13472 GDSL-like Lipase/Acylhydrolase family HMY34_02755 PF14403 Circularly permuted ATP-grasp type 2 HMY34_02770 PF05593 RHS Repeat HMY34_02770 PF03527 RHS protein HMY34_02820 PF13808 DDE_Tnp_1-associated HMY34_02820 PF01609 Transposase DDE domain HMY34_02855 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_02855 PF00069 Protein kinase domain HMY34_02865 PF01580 FtsK/SpoIIIE family HMY34_02880 PF00873 AcrB/AcrD/AcrF family HMY34_02890 PF00085 Thioredoxin HMY34_02895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HMY34_02915 PF00009 Elongation factor Tu GTP binding domain HMY34_02915 PF03144 Elongation factor Tu domain 2 HMY34_02915 PF16658 Class II release factor RF3, C-terminal domain HMY34_02940 PF01464 Transglycosylase SLT domain HMY34_02945 PF04305 Protein of unknown function (DUF455) HMY34_02950 PF13660 Domain of unknown function (DUF4147) HMY34_02950 PF05161 MOFRL family HMY34_02955 PF00072 Response regulator receiver domain HMY34_02955 PF00196 Bacterial regulatory proteins, luxR family HMY34_02975 PF17092 Penicillin-binding protein OB-like domain HMY34_02975 PF00912 Transglycosylase HMY34_02975 PF00905 Penicillin binding protein transpeptidase domain HMY34_02980 PF11104 Type IV pilus assembly protein PilM; HMY34_02990 PF04350 Pilus assembly protein, PilO HMY34_03005 PF03958 Bacterial type II/III secretion system short domain HMY34_03005 PF07660 Secretin and TonB N terminus short domain HMY34_03005 PF00263 Bacterial type II and III secretion system protein HMY34_03005 PF11741 AMIN domain HMY34_03010 PF01202 Shikimate kinase HMY34_03015 PF01761 3-dehydroquinate synthase HMY34_03025 PF03552 Cellulose synthase HMY34_03025 PF00535 Glycosyl transferase family 2 HMY34_03025 PF07238 PilZ domain HMY34_03030 PF16353 Domain of unknown function(DUF4981) HMY34_03030 PF02929 Beta galactosidase small chain HMY34_03030 PF00703 Glycosyl hydrolases family 2 HMY34_03030 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HMY34_03030 PF02837 Glycosyl hydrolases family 2, sugar binding domain HMY34_03040 PF00483 Nucleotidyl transferase HMY34_03045 PF01740 STAS domain HMY34_03055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_03055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_03055 PF00672 HAMP domain HMY34_03055 PF01627 Hpt domain HMY34_03055 PF00512 His Kinase A (phospho-acceptor) domain HMY34_03055 PF00072 Response regulator receiver domain HMY34_03060 PF13426 PAS domain HMY34_03060 PF07228 Stage II sporulation protein E (SpoIIE) HMY34_03075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_03075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_03075 PF00512 His Kinase A (phospho-acceptor) domain HMY34_03075 PF00072 Response regulator receiver domain HMY34_03075 PF01627 Hpt domain HMY34_03075 PF00672 HAMP domain HMY34_03125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HMY34_03125 PF09317 Domain of unknown function (DUF1974) HMY34_03125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HMY34_03135 PF03692 Putative zinc- or iron-chelating domain HMY34_03140 PF00034 Cytochrome c HMY34_03140 PF03150 Di-haem cytochrome c peroxidase HMY34_03150 PF00223 Photosystem I psaA/psaB protein HMY34_03150 PF00691 OmpA family HMY34_03160 PF00141 Peroxidase HMY34_03165 PF03544 Gram-negative bacterial TonB protein C-terminal HMY34_03170 PF02472 Biopolymer transport protein ExbD/TolR HMY34_03175 PF01618 MotA/TolQ/ExbB proton channel family HMY34_03180 PF00593 TonB dependent receptor HMY34_03180 PF07715 TonB-dependent Receptor Plug Domain HMY34_03185 PF18331 PKHD-type hydroxylase C-terminal domain HMY34_03185 PF13640 2OG-Fe(II) oxygenase superfamily HMY34_03195 PF04955 HupE / UreJ protein HMY34_03210 PF00578 AhpC/TSA family HMY34_03210 PF10417 C-terminal domain of 1-Cys peroxiredoxin HMY34_03215 PF01169 Uncharacterized protein family UPF0016 HMY34_03220 PF00581 Rhodanese-like domain HMY34_03225 PF16736 Single Cache-like HMY34_03225 PF00512 His Kinase A (phospho-acceptor) domain HMY34_03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_03225 PF00989 PAS fold HMY34_03230 PF12323 Helix-turn-helix domain HMY34_03230 PF01385 Probable transposase HMY34_03230 PF07282 Putative transposase DNA-binding domain HMY34_03255 PF03232 Ubiquinone biosynthesis protein COQ7 HMY34_03275 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HMY34_03285 PF03150 Di-haem cytochrome c peroxidase HMY34_03290 PF00210 Ferritin-like domain HMY34_03295 PF00210 Ferritin-like domain HMY34_03315 PF07715 TonB-dependent Receptor Plug Domain HMY34_03315 PF00593 TonB dependent receptor HMY34_03325 PF01243 Pyridoxamine 5'-phosphate oxidase HMY34_03330 PF01497 Periplasmic binding protein HMY34_03335 PF01032 FecCD transport family HMY34_03340 PF00005 ABC transporter HMY34_03345 PF05171 Haemin-degrading HemS.ChuX domain HMY34_03395 PF00005 ABC transporter HMY34_03395 PF12704 MacB-like periplasmic core domain HMY34_03395 PF02687 FtsX-like permease family HMY34_03400 PF00529 HlyD membrane-fusion protein of T1SS HMY34_03400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HMY34_03405 PF02321 Outer membrane efflux protein HMY34_03420 PF00486 Transcriptional regulatory protein, C terminal HMY34_03420 PF00072 Response regulator receiver domain HMY34_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_03425 PF00512 His Kinase A (phospho-acceptor) domain HMY34_03425 PF16527 Two-component sensor protein CpxA, periplasmic domain HMY34_03425 PF00672 HAMP domain HMY34_03430 PF00082 Subtilase family HMY34_03430 PF04151 Bacterial pre-peptidase C-terminal domain HMY34_03435 PF17191 RecG wedge domain HMY34_03435 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HMY34_03435 PF00270 DEAD/DEAH box helicase HMY34_03445 PF00753 Metallo-beta-lactamase superfamily HMY34_03445 PF16123 Hydroxyacylglutathione hydrolase C-terminus HMY34_03455 PF13187 4Fe-4S dicluster domain HMY34_03455 PF01645 Conserved region in glutamate synthase HMY34_03465 PF13416 Bacterial extracellular solute-binding protein HMY34_03470 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_03475 PF08402 TOBE domain HMY34_03475 PF00005 ABC transporter HMY34_03485 PF01751 Toprim domain HMY34_03485 PF01131 DNA topoisomerase HMY34_03490 PF00171 Aldehyde dehydrogenase family HMY34_03495 PF16198 tRNA pseudouridylate synthase B C-terminal domain HMY34_03495 PF09157 Pseudouridine synthase II TruB, C-terminal HMY34_03495 PF01509 TruB family pseudouridylate synthase (N terminal domain) HMY34_03500 PF02033 Ribosome-binding factor A HMY34_03505 PF03144 Elongation factor Tu domain 2 HMY34_03505 PF04760 Translation initiation factor IF-2, N-terminal region HMY34_03505 PF08364 Bacterial translation initiation factor IF-2 associated region HMY34_03505 PF11987 Translation-initiation factor 2 HMY34_03505 PF00009 Elongation factor Tu GTP binding domain HMY34_03510 PF08364 Bacterial translation initiation factor IF-2 associated region HMY34_03510 PF04760 Translation initiation factor IF-2, N-terminal region HMY34_03510 PF00009 Elongation factor Tu GTP binding domain HMY34_03510 PF11987 Translation-initiation factor 2 HMY34_03510 PF03144 Elongation factor Tu domain 2 HMY34_03515 PF13184 NusA-like KH domain HMY34_03515 PF08529 NusA N-terminal domain HMY34_03520 PF02576 RimP N-terminal domain HMY34_03520 PF17384 RimP C-terminal SH3 domain HMY34_03535 PF00361 Proton-conducting membrane transporter HMY34_03540 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus HMY34_03540 PF00361 Proton-conducting membrane transporter HMY34_03545 PF00361 Proton-conducting membrane transporter HMY34_03545 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HMY34_03550 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HMY34_03555 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HMY34_03560 PF12838 4Fe-4S dicluster domain HMY34_03565 PF00146 NADH dehydrogenase HMY34_03570 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal HMY34_03570 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HMY34_03570 PF00384 Molybdopterin oxidoreductase HMY34_03575 PF10531 SLBB domain HMY34_03575 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HMY34_03575 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HMY34_03585 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HMY34_03590 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HMY34_03595 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HMY34_03600 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HMY34_03610 PF03840 Preprotein translocase SecG subunit HMY34_03615 PF00121 Triosephosphate isomerase HMY34_03620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HMY34_03620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HMY34_03620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HMY34_03620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HMY34_03625 PF00809 Pterin binding enzyme HMY34_03630 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_03630 PF17862 AAA+ lid domain HMY34_03630 PF06480 FtsH Extracellular HMY34_03630 PF01434 Peptidase family M41 HMY34_03635 PF01728 FtsJ-like methyltransferase HMY34_03640 PF01985 CRS1 / YhbY (CRM) domain HMY34_03660 PF13247 4Fe-4S dicluster domain HMY34_03670 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_03670 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HMY34_03685 PF04358 DsrC like protein HMY34_03690 PF04077 DsrH like protein HMY34_03695 PF02635 DsrE/DsrF-like family HMY34_03700 PF02635 DsrE/DsrF-like family HMY34_03705 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HMY34_03705 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HMY34_03710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HMY34_03710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HMY34_03745 PF13640 2OG-Fe(II) oxygenase superfamily HMY34_03745 PF18331 PKHD-type hydroxylase C-terminal domain HMY34_03770 PF07690 Major Facilitator Superfamily HMY34_03835 PF01610 Transposase HMY34_03835 PF13542 Helix-turn-helix domain of transposase family ISL3 HMY34_03835 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HMY34_03875 PF01494 FAD binding domain HMY34_03885 PF01416 tRNA pseudouridine synthase HMY34_03895 PF01118 Semialdehyde dehydrogenase, NAD binding domain HMY34_03895 PF02774 Semialdehyde dehydrogenase, dimerisation domain HMY34_03900 PF00180 Isocitrate/isopropylmalate dehydrogenase HMY34_03905 PF00694 Aconitase C-terminal domain HMY34_03910 PF00330 Aconitase family (aconitate hydratase) HMY34_03920 PF17961 Bacterial Ig domain HMY34_03920 PF04650 YSIRK type signal peptide HMY34_03920 PF10425 C-terminus of bacterial fibrinogen-binding adhesin HMY34_03920 PF17210 SdrD B-like domain HMY34_03920 PF00746 LPXTG cell wall anchor motif HMY34_03940 PF04650 YSIRK type signal peptide HMY34_03940 PF10425 C-terminus of bacterial fibrinogen-binding adhesin HMY34_03940 PF17210 SdrD B-like domain HMY34_03940 PF00746 LPXTG cell wall anchor motif HMY34_03940 PF17961 Bacterial Ig domain HMY34_03960 PF01230 HIT domain HMY34_03965 PF02132 RecR protein HMY34_03965 PF13662 Toprim domain HMY34_03970 PF02575 YbaB/EbfC DNA-binding family HMY34_03975 PF12169 DNA polymerase III subunits gamma and tau domain III HMY34_03975 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HMY34_03975 PF12170 DNA polymerase III tau subunit V interacting with alpha HMY34_03985 PF00072 Response regulator receiver domain HMY34_03985 PF00486 Transcriptional regulatory protein, C terminal HMY34_04000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HMY34_04000 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HMY34_04005 PF01584 CheW-like domain HMY34_04005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_04005 PF01627 Hpt domain HMY34_04005 PF00072 Response regulator receiver domain HMY34_04010 PF00072 Response regulator receiver domain HMY34_04010 PF00486 Transcriptional regulatory protein, C terminal HMY34_04040 PF00579 tRNA synthetases class I (W and Y) HMY34_04045 PF01551 Peptidase family M23 HMY34_04045 PF01464 Transglycosylase SLT domain HMY34_04045 PF10145 Phage-related minor tail protein HMY34_04050 PF04384 Iron-sulphur cluster assembly HMY34_04055 PF00111 2Fe-2S iron-sulfur cluster binding domain HMY34_04060 PF00012 Hsp70 protein HMY34_04065 PF07743 HSCB C-terminal oligomerisation domain HMY34_04070 PF01521 Iron-sulphur cluster biosynthesis HMY34_04075 PF01592 NifU-like N terminal domain HMY34_04080 PF00266 Aminotransferase class-V HMY34_04085 PF02082 Transcriptional regulator HMY34_04090 PF00132 Bacterial transferase hexapeptide (six repeats) HMY34_04095 PF00708 Acylphosphatase HMY34_04095 PF17788 HypF Kae1-like domain HMY34_04095 PF01300 Telomere recombination HMY34_04095 PF07503 HypF finger HMY34_04105 PF02769 AIR synthase related protein, C-terminal domain HMY34_04105 PF00586 AIR synthase related protein, N-terminal domain HMY34_04110 PF01924 Hydrogenase formation hypA family HMY34_04115 PF01455 HupF/HypC family HMY34_04130 PF02492 CobW/HypB/UreG, nucleotide-binding domain HMY34_04135 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HMY34_04140 PF00881 Nitroreductase family HMY34_04150 PF00814 Glycoprotease family HMY34_04155 PF13307 Helicase C-terminal domain HMY34_04155 PF04851 Type III restriction enzyme, res subunit HMY34_04165 PF14814 Bifunctional transglycosylase second domain HMY34_04165 PF00912 Transglycosylase HMY34_04165 PF00905 Penicillin binding protein transpeptidase domain HMY34_04180 PF03364 Polyketide cyclase / dehydrase and lipid transport HMY34_04185 PF03658 RnfH family Ubiquitin HMY34_04195 PF04355 SmpA / OmlA family HMY34_04200 PF01475 Ferric uptake regulator family HMY34_04210 PF00196 Bacterial regulatory proteins, luxR family HMY34_04210 PF00072 Response regulator receiver domain HMY34_04220 PF01165 Ribosomal protein S21 HMY34_04225 PF09424 Yqey-like protein HMY34_04230 PF01208 Uroporphyrinogen decarboxylase (URO-D) HMY34_04235 PF00196 Bacterial regulatory proteins, luxR family HMY34_04235 PF00072 Response regulator receiver domain HMY34_04245 PF00672 HAMP domain HMY34_04245 PF07730 Histidine kinase HMY34_04245 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HMY34_04245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_04260 PF00196 Bacterial regulatory proteins, luxR family HMY34_04260 PF00072 Response regulator receiver domain HMY34_04265 PF01627 Hpt domain HMY34_04265 PF00072 Response regulator receiver domain HMY34_04265 PF18415 Histidine kinase receptor ArcB trans-membrane domain HMY34_04265 PF00512 His Kinase A (phospho-acceptor) domain HMY34_04265 PF00989 PAS fold HMY34_04265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_04285 PF00082 Subtilase family HMY34_04320 PF00069 Protein kinase domain HMY34_04320 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_04385 PF13191 AAA ATPase domain HMY34_04385 PF00211 Adenylate and Guanylate cyclase catalytic domain HMY34_04410 PF01053 Cys/Met metabolism PLP-dependent enzyme HMY34_04420 PF00156 Phosphoribosyl transferase domain HMY34_04425 PF02674 Colicin V production protein HMY34_04435 PF02875 Mur ligase family, glutamate ligase domain HMY34_04435 PF08245 Mur ligase middle domain HMY34_04440 PF01039 Carboxyl transferase domain HMY34_04440 PF17848 Acetyl-coA carboxylase zinc finger domain HMY34_04445 PF00290 Tryptophan synthase alpha chain HMY34_04450 PF00291 Pyridoxal-phosphate dependent enzyme HMY34_04485 PF05685 Putative restriction endonuclease HMY34_04515 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HMY34_04520 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_04525 PF01738 Dienelactone hydrolase family HMY34_04530 PF04551 GcpE protein HMY34_04550 PF00005 ABC transporter HMY34_04555 PF02405 Permease MlaE HMY34_04590 PF00970 Oxidoreductase FAD-binding domain HMY34_04590 PF00175 Oxidoreductase NAD-binding domain HMY34_04590 PF00111 2Fe-2S iron-sulfur cluster binding domain HMY34_04600 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HMY34_04605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HMY34_04610 PF03279 Bacterial lipid A biosynthesis acyltransferase HMY34_04620 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HMY34_04625 PF00535 Glycosyl transferase family 2 HMY34_04635 PF00248 Aldo/keto reductase family HMY34_04645 PF00501 AMP-binding enzyme HMY34_04645 PF01553 Acyltransferase HMY34_04650 PF17783 CvfB-like winged helix domain HMY34_04650 PF13509 S1 domain HMY34_04655 PF02146 Sir2 family HMY34_04660 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HMY34_04665 PF07669 Eco57I restriction-modification methylase HMY34_04695 PF17783 CvfB-like winged helix domain HMY34_04695 PF13509 S1 domain HMY34_04755 PF00912 Transglycosylase HMY34_04755 PF00905 Penicillin binding protein transpeptidase domain HMY34_04755 PF14814 Bifunctional transglycosylase second domain HMY34_04795 PF13676 TIR domain HMY34_04830 PF13635 Domain of unknown function (DUF4143) HMY34_04830 PF13173 AAA domain HMY34_04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_04845 PF00672 HAMP domain HMY34_04845 PF00512 His Kinase A (phospho-acceptor) domain HMY34_04845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_04845 PF00072 Response regulator receiver domain HMY34_04845 PF01627 Hpt domain HMY34_04860 PF00374 Nickel-dependent hydrogenase HMY34_04880 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HMY34_04880 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HMY34_04890 PF01750 Hydrogenase maturation protease HMY34_04895 PF01594 AI-2E family transporter HMY34_04900 PF01327 Polypeptide deformylase HMY34_04920 PF01544 CorA-like Mg2+ transporter protein HMY34_04940 PF03309 Type III pantothenate kinase HMY34_04945 PF03099 Biotin/lipoate A/B protein ligase family HMY34_04945 PF02237 Biotin protein ligase C terminal domain HMY34_04950 PF12832 MFS_1 like family HMY34_04955 PF01264 Chorismate synthase HMY34_04965 PF17961 Bacterial Ig domain HMY34_04965 PF00746 LPXTG cell wall anchor motif HMY34_04965 PF17210 SdrD B-like domain HMY34_04965 PF10425 C-terminus of bacterial fibrinogen-binding adhesin HMY34_04965 PF04650 YSIRK type signal peptide HMY34_04970 PF00085 Thioredoxin HMY34_04975 PF02441 Flavoprotein HMY34_04980 PF01225 Mur ligase family, catalytic domain HMY34_04980 PF02875 Mur ligase family, glutamate ligase domain HMY34_04980 PF08245 Mur ligase middle domain HMY34_04985 PF08448 PAS fold HMY34_04985 PF00563 EAL domain HMY34_04985 PF00990 Diguanylate cyclase, GGDEF domain HMY34_04990 PF01245 Ribosomal protein L19 HMY34_04995 PF01746 tRNA (Guanine-1)-methyltransferase HMY34_05000 PF01782 RimM N-terminal domain HMY34_05000 PF05239 PRC-barrel domain HMY34_05005 PF00886 Ribosomal protein S16 HMY34_05010 PF06940 Domain of unknown function (DUF1287) HMY34_05030 PF00448 SRP54-type protein, GTPase domain HMY34_05030 PF02881 SRP54-type protein, helical bundle domain HMY34_05030 PF02978 Signal peptide binding domain HMY34_05035 PF01578 Cytochrome C assembly protein HMY34_05040 PF03471 Transporter associated domain HMY34_05040 PF00571 CBS domain HMY34_05040 PF01595 Cyclin M transmembrane N-terminal domain HMY34_05045 PF18073 Rubredoxin metal binding domain HMY34_05050 PF00270 DEAD/DEAH box helicase HMY34_05050 PF00271 Helicase conserved C-terminal domain HMY34_05060 PF02581 Thiamine monophosphate synthase HMY34_05065 PF01960 ArgJ family HMY34_05070 PF02810 SEC-C motif HMY34_05070 PF07517 SecA DEAD-like domain HMY34_05070 PF01043 SecA preprotein cross-linking domain HMY34_05070 PF07516 SecA Wing and Scaffold domain HMY34_05075 PF01551 Peptidase family M23 HMY34_05075 PF10145 Phage-related minor tail protein HMY34_05075 PF01464 Transglycosylase SLT domain HMY34_05085 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HMY34_05090 PF12327 FtsZ family, C-terminal domain HMY34_05090 PF00091 Tubulin/FtsZ family, GTPase domain HMY34_05095 PF02491 SHS2 domain inserted in FTSA HMY34_05100 PF08478 POTRA domain, FtsQ-type HMY34_05100 PF03799 Cell division protein FtsQ HMY34_05105 PF07478 D-ala D-ala ligase C-terminus HMY34_05105 PF01820 D-ala D-ala ligase N-terminus HMY34_05110 PF01225 Mur ligase family, catalytic domain HMY34_05110 PF02875 Mur ligase family, glutamate ligase domain HMY34_05110 PF08245 Mur ligase middle domain HMY34_05115 PF04101 Glycosyltransferase family 28 C-terminal domain HMY34_05115 PF03033 Glycosyltransferase family 28 N-terminal domain HMY34_05120 PF01098 Cell cycle protein HMY34_05125 PF02875 Mur ligase family, glutamate ligase domain HMY34_05125 PF08245 Mur ligase middle domain HMY34_05130 PF00953 Glycosyl transferase family 4 HMY34_05130 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HMY34_05135 PF02875 Mur ligase family, glutamate ligase domain HMY34_05135 PF01225 Mur ligase family, catalytic domain HMY34_05135 PF08245 Mur ligase middle domain HMY34_05140 PF01225 Mur ligase family, catalytic domain HMY34_05140 PF02875 Mur ligase family, glutamate ligase domain HMY34_05140 PF08245 Mur ligase middle domain HMY34_05145 PF03717 Penicillin-binding Protein dimerisation domain HMY34_05145 PF00905 Penicillin binding protein transpeptidase domain HMY34_05155 PF01795 MraW methylase family HMY34_05160 PF02381 MraZ protein, putative antitoxin-like HMY34_05180 PF13667 ThiC-associated domain HMY34_05180 PF01964 Radical SAM ThiC family HMY34_05205 PF00892 EamA-like transporter family HMY34_05215 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_05215 PF17862 AAA+ lid domain HMY34_05215 PF06480 FtsH Extracellular HMY34_05215 PF01434 Peptidase family M41 HMY34_05235 PF00092 von Willebrand factor type A domain HMY34_05245 PF02769 AIR synthase related protein, C-terminal domain HMY34_05245 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HMY34_05245 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HMY34_05270 PF10431 C-terminal, D2-small domain, of ClpB protein HMY34_05270 PF02861 Clp amino terminal domain, pathogenicity island component HMY34_05270 PF07724 AAA domain (Cdc48 subfamily) HMY34_05270 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_05270 PF17871 AAA lid domain HMY34_05275 PF00797 N-acetyltransferase HMY34_05280 PF00892 EamA-like transporter family HMY34_05285 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HMY34_05290 PF00155 Aminotransferase class I and II HMY34_05290 PF00392 Bacterial regulatory proteins, gntR family HMY34_05335 PF04471 Restriction endonuclease HMY34_05335 PF14338 Mrr N-terminal domain HMY34_05350 PF13180 PDZ domain HMY34_05360 PF01266 FAD dependent oxidoreductase HMY34_05365 PF01467 Cytidylyltransferase-like HMY34_05365 PF00294 pfkB family carbohydrate kinase HMY34_05370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HMY34_05375 PF01177 Asp/Glu/Hydantoin racemase HMY34_05380 PF00459 Inositol monophosphatase family HMY34_05390 PF00762 Ferrochelatase HMY34_05395 PF00994 Probable molybdopterin binding domain HMY34_05395 PF18146 Damage-inducible protein CinA KH domain HMY34_05395 PF02464 Competence-damaged protein HMY34_05400 PF03279 Bacterial lipid A biosynthesis acyltransferase HMY34_05405 PF01514 Secretory protein of YscJ/FliF family HMY34_05435 PF00263 Bacterial type II and III secretion system protein HMY34_05435 PF03958 Bacterial type II/III secretion system short domain HMY34_05440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HMY34_05445 PF00813 FliP family HMY34_05450 PF01313 Bacterial export proteins, family 3 HMY34_05455 PF01311 Bacterial export proteins, family 1 HMY34_05460 PF01312 FlhB HrpN YscU SpaS Family HMY34_05470 PF00771 FHIPEP family HMY34_05475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMY34_05475 PF18269 T3SS EscN ATPase C-terminal domain HMY34_05475 PF02874 ATP synthase alpha/beta family, beta-barrel domain HMY34_05485 PF02108 Flagellar assembly protein FliH HMY34_05500 PF01722 BolA-like protein HMY34_05505 PF03641 Possible lysine decarboxylase HMY34_05515 PF01636 Phosphotransferase enzyme family HMY34_05520 PF01545 Cation efflux family HMY34_05520 PF16916 Dimerisation domain of Zinc Transporter HMY34_05525 PF00120 Glutamine synthetase, catalytic domain HMY34_05525 PF18318 Glutamine synthetase C-terminal domain HMY34_05525 PF12437 Glutamine synthetase type III N terminal HMY34_05530 PF03951 Glutamine synthetase, beta-Grasp domain HMY34_05530 PF00120 Glutamine synthetase, catalytic domain HMY34_05560 PF00158 Sigma-54 interaction domain HMY34_05560 PF02954 Bacterial regulatory protein, Fis family HMY34_05560 PF00072 Response regulator receiver domain HMY34_05565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_05565 PF00512 His Kinase A (phospho-acceptor) domain HMY34_05565 PF00989 PAS fold HMY34_05590 PF00474 Sodium:solute symporter family HMY34_05595 PF03600 Citrate transporter HMY34_05600 PF13180 PDZ domain HMY34_05610 PF05114 Protein of unknown function (DUF692) HMY34_05620 PF12706 Beta-lactamase superfamily domain HMY34_05620 PF00753 Metallo-beta-lactamase superfamily HMY34_05640 PF00199 Catalase HMY34_05660 PF04545 Sigma-70, region 4 HMY34_05660 PF04542 Sigma-70 region 2 HMY34_05680 PF01740 STAS domain HMY34_05680 PF00916 Sulfate permease family HMY34_05705 PF00633 Helix-hairpin-helix motif HMY34_05705 PF00730 HhH-GPD superfamily base excision DNA repair protein HMY34_05705 PF14815 NUDIX domain HMY34_05710 PF04362 Bacterial Fe(2+) trafficking HMY34_05720 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HMY34_05720 PF00476 DNA polymerase family A HMY34_05720 PF01367 5'-3' exonuclease, C-terminal SAM fold HMY34_05720 PF01612 3'-5' exonuclease HMY34_05725 PF12848 ABC transporter HMY34_05725 PF00005 ABC transporter HMY34_05730 PF13676 TIR domain HMY34_05735 PF00009 Elongation factor Tu GTP binding domain HMY34_05735 PF11987 Translation-initiation factor 2 HMY34_05735 PF08364 Bacterial translation initiation factor IF-2 associated region HMY34_05735 PF04760 Translation initiation factor IF-2, N-terminal region HMY34_05755 PF00929 Exonuclease HMY34_05760 PF00075 RNase H HMY34_05770 PF01464 Transglycosylase SLT domain HMY34_05775 PF12401 Protein of unknown function (DUF2662) HMY34_05775 PF00498 FHA domain HMY34_05780 PF01812 5-formyltetrahydrofolate cyclo-ligase family HMY34_05795 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HMY34_05815 PF04055 Radical SAM superfamily HMY34_05815 PF01938 TRAM domain HMY34_05815 PF00919 Uncharacterized protein family UPF0004 HMY34_05820 PF13145 PPIC-type PPIASE domain HMY34_05840 PF00216 Bacterial DNA-binding protein HMY34_05845 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_05845 PF02190 ATP-dependent protease La (LON) substrate-binding domain HMY34_05845 PF05362 Lon protease (S16) C-terminal proteolytic domain HMY34_05850 PF07724 AAA domain (Cdc48 subfamily) HMY34_05850 PF06689 ClpX C4-type zinc finger HMY34_05850 PF10431 C-terminal, D2-small domain, of ClpB protein HMY34_05855 PF00574 Clp protease HMY34_05860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HMY34_05860 PF05698 Bacterial trigger factor protein (TF) C-terminus HMY34_05860 PF05697 Bacterial trigger factor protein (TF) HMY34_05885 PF00005 ABC transporter HMY34_05890 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_05910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HMY34_05910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HMY34_05930 PF04299 Putative FMN-binding domain HMY34_05945 PF00005 ABC transporter HMY34_05950 PF00072 Response regulator receiver domain HMY34_05950 PF03861 ANTAR domain HMY34_05955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HMY34_05965 PF02661 Fic/DOC family HMY34_05970 PF13676 TIR domain HMY34_05980 PF00892 EamA-like transporter family HMY34_06020 PF04324 BFD-like [2Fe-2S] binding domain HMY34_06020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HMY34_06020 PF01568 Molydopterin dinucleotide binding domain HMY34_06020 PF00384 Molybdopterin oxidoreductase HMY34_06030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HMY34_06030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HMY34_06030 PF18267 Rubredoxin NAD+ reductase C-terminal domain HMY34_06030 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_06030 PF04324 BFD-like [2Fe-2S] binding domain HMY34_06075 PF01555 DNA methylase HMY34_06085 PF09335 SNARE associated Golgi protein HMY34_06110 PF00561 alpha/beta hydrolase fold HMY34_06120 PF00108 Thiolase, N-terminal domain HMY34_06120 PF02803 Thiolase, C-terminal domain HMY34_06125 PF00106 short chain dehydrogenase HMY34_06130 PF05233 PHB accumulation regulatory domain HMY34_06130 PF07879 PHB/PHA accumulation regulator DNA-binding domain HMY34_06170 PF07282 Putative transposase DNA-binding domain HMY34_06170 PF01385 Probable transposase HMY34_06170 PF12323 Helix-turn-helix domain HMY34_06200 PF09827 CRISPR associated protein Cas2 HMY34_06205 PF01867 CRISPR associated protein Cas1 HMY34_06215 PF09827 CRISPR associated protein Cas2 HMY34_06240 PF00311 Phosphoenolpyruvate carboxylase HMY34_06250 PF01521 Iron-sulphur cluster biosynthesis HMY34_06265 PF01118 Semialdehyde dehydrogenase, NAD binding domain HMY34_06265 PF02774 Semialdehyde dehydrogenase, dimerisation domain HMY34_06275 PF03653 Uncharacterised protein family (UPF0093) HMY34_06285 PF00293 NUDIX domain HMY34_06295 PF17946 RecC C-terminal domain HMY34_06300 PF00534 Glycosyl transferases group 1 HMY34_06300 PF13439 Glycosyltransferase Family 4 HMY34_06305 PF13439 Glycosyltransferase Family 4 HMY34_06305 PF00534 Glycosyl transferases group 1 HMY34_06315 PF14307 Glycosyltransferase WbsX HMY34_06315 PF05045 Rhamnan synthesis protein F HMY34_06320 PF00005 ABC transporter HMY34_06335 PF02397 Bacterial sugar transferase HMY34_06340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HMY34_06340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HMY34_06340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HMY34_06340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HMY34_06345 PF09308 LuxQ, periplasmic HMY34_06345 PF00072 Response regulator receiver domain HMY34_06345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_06345 PF00512 His Kinase A (phospho-acceptor) domain HMY34_06375 PF00005 ABC transporter HMY34_06375 PF12848 ABC transporter HMY34_06390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_06390 PF03466 LysR substrate binding domain HMY34_06400 PF00953 Glycosyl transferase family 4 HMY34_06405 PF03934 Type II secretion system (T2SS), protein K HMY34_06415 PF07963 Prokaryotic N-terminal methylation motif HMY34_06420 PF07963 Prokaryotic N-terminal methylation motif HMY34_06425 PF07963 Prokaryotic N-terminal methylation motif HMY34_06425 PF08334 Type II secretion system (T2SS), protein G HMY34_06430 PF00482 Type II secretion system (T2SS), protein F HMY34_06435 PF00437 Type II/IV secretion system protein HMY34_06435 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HMY34_06465 PF04545 Sigma-70, region 4 HMY34_06465 PF00140 Sigma-70 factor, region 1.2 HMY34_06465 PF04542 Sigma-70 region 2 HMY34_06495 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HMY34_06495 PF02779 Transketolase, pyrimidine binding domain HMY34_06495 PF02780 Transketolase, C-terminal domain HMY34_06500 PF00348 Polyprenyl synthetase HMY34_06505 PF02609 Exonuclease VII small subunit HMY34_06515 PF07072 Cell division protein HMY34_06520 PF01121 Dephospho-CoA kinase HMY34_06525 PF01649 Ribosomal protein S20 HMY34_06530 PF17762 HTH domain found in ParB protein HMY34_06530 PF02195 ParB-like nuclease domain HMY34_06535 PF13614 AAA domain HMY34_06540 PF02527 rRNA small subunit methyltransferase G HMY34_06545 PF01134 Glucose inhibited division protein A HMY34_06545 PF13932 GidA associated domain HMY34_06550 PF06968 Biotin and Thiamin Synthesis associated domain HMY34_06550 PF04055 Radical SAM superfamily HMY34_06560 PF01196 Ribosomal protein L17 HMY34_06565 PF01000 RNA polymerase Rpb3/RpoA insert domain HMY34_06565 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HMY34_06565 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HMY34_06570 PF00163 Ribosomal protein S4/S9 N-terminal domain HMY34_06570 PF01479 S4 domain HMY34_06575 PF00411 Ribosomal protein S11 HMY34_06580 PF00416 Ribosomal protein S13/S18 HMY34_06585 PF00444 Ribosomal protein L36 HMY34_06590 PF00344 SecY translocase HMY34_06595 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HMY34_06600 PF00327 Ribosomal protein L30p/L7e HMY34_06605 PF00333 Ribosomal protein S5, N-terminal domain HMY34_06605 PF03719 Ribosomal protein S5, C-terminal domain HMY34_06610 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HMY34_06615 PF00347 Ribosomal protein L6 HMY34_06620 PF00410 Ribosomal protein S8 HMY34_06625 PF00253 Ribosomal protein S14p/S29e HMY34_06630 PF00281 Ribosomal protein L5 HMY34_06630 PF00673 ribosomal L5P family C-terminus HMY34_06635 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HMY34_06635 PF00467 KOW motif HMY34_06640 PF00238 Ribosomal protein L14p/L23e HMY34_06645 PF00366 Ribosomal protein S17 HMY34_06650 PF00831 Ribosomal L29 protein HMY34_06655 PF00252 Ribosomal protein L16p/L10e HMY34_06660 PF07650 KH domain HMY34_06660 PF00189 Ribosomal protein S3, C-terminal domain HMY34_06665 PF00237 Ribosomal protein L22p/L17e HMY34_06670 PF00203 Ribosomal protein S19 HMY34_06675 PF03947 Ribosomal Proteins L2, C-terminal domain HMY34_06675 PF00181 Ribosomal Proteins L2, RNA binding domain HMY34_06680 PF00276 Ribosomal protein L23 HMY34_06685 PF00573 Ribosomal protein L4/L1 family HMY34_06690 PF00297 Ribosomal protein L3 HMY34_06695 PF00338 Ribosomal protein S10p/S20e HMY34_06700 PF14492 Elongation Factor G, domain II HMY34_06700 PF00009 Elongation factor Tu GTP binding domain HMY34_06700 PF03764 Elongation factor G, domain IV HMY34_06700 PF00679 Elongation factor G C-terminus HMY34_06700 PF03144 Elongation factor Tu domain 2 HMY34_06705 PF00177 Ribosomal protein S7p/S5e HMY34_06710 PF00164 Ribosomal protein S12/S23 HMY34_06715 PF05000 RNA polymerase Rpb1, domain 4 HMY34_06715 PF04983 RNA polymerase Rpb1, domain 3 HMY34_06715 PF04998 RNA polymerase Rpb1, domain 5 HMY34_06715 PF00623 RNA polymerase Rpb1, domain 2 HMY34_06715 PF04997 RNA polymerase Rpb1, domain 1 HMY34_06720 PF00562 RNA polymerase Rpb2, domain 6 HMY34_06720 PF04560 RNA polymerase Rpb2, domain 7 HMY34_06720 PF04563 RNA polymerase beta subunit HMY34_06720 PF04561 RNA polymerase Rpb2, domain 2 HMY34_06720 PF04565 RNA polymerase Rpb2, domain 3 HMY34_06720 PF10385 RNA polymerase beta subunit external 1 domain HMY34_06725 PF00542 Ribosomal protein L7/L12 C-terminal domain HMY34_06725 PF16320 Ribosomal protein L7/L12 dimerisation domain HMY34_06730 PF00466 Ribosomal protein L10 HMY34_06735 PF00687 Ribosomal protein L1p/L10e family HMY34_06740 PF00298 Ribosomal protein L11, RNA binding domain HMY34_06740 PF03946 Ribosomal protein L11, N-terminal domain HMY34_06745 PF00467 KOW motif HMY34_06745 PF02357 Transcription termination factor nusG HMY34_06750 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HMY34_06760 PF00009 Elongation factor Tu GTP binding domain HMY34_06760 PF03144 Elongation factor Tu domain 2 HMY34_06760 PF03143 Elongation factor Tu C-terminal domain HMY34_06780 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HMY34_06780 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HMY34_06780 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HMY34_06790 PF01103 Surface antigen HMY34_06790 PF17243 POTRA domain TamA domain 1 HMY34_06790 PF07244 Surface antigen variable number repeat HMY34_06795 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HMY34_06800 PF01980 tRNA-methyltransferase O HMY34_06800 PF18389 TrmO C-terminal domain HMY34_06805 PF02698 DUF218 domain HMY34_06815 PF01243 Pyridoxamine 5'-phosphate oxidase HMY34_06845 PF03150 Di-haem cytochrome c peroxidase HMY34_06850 PF00037 4Fe-4S binding domain HMY34_06855 PF01467 Cytidylyltransferase-like HMY34_06860 PF00950 ABC 3 transport family HMY34_06865 PF00005 ABC transporter HMY34_06870 PF01297 Zinc-uptake complex component A periplasmic HMY34_06880 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HMY34_06880 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HMY34_06890 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HMY34_06890 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HMY34_06895 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_06900 PF01966 HD domain HMY34_06900 PF12627 Probable RNA and SrmB- binding site of polymerase A HMY34_06900 PF01743 Poly A polymerase head domain HMY34_06915 PF08534 Redoxin HMY34_06955 PF00578 AhpC/TSA family HMY34_06970 PF01975 Survival protein SurE HMY34_06975 PF01713 Smr domain HMY34_06975 PF00488 MutS domain V HMY34_06990 PF08011 PD-(D/E)XK nuclease superfamily HMY34_06990 PF09820 Predicted AAA-ATPase HMY34_06995 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HMY34_07000 PF00585 C-terminal regulatory domain of Threonine dehydratase HMY34_07000 PF00291 Pyridoxal-phosphate dependent enzyme HMY34_07035 PF00797 N-acetyltransferase HMY34_07080 PF13532 2OG-Fe(II) oxygenase superfamily HMY34_07090 PF09820 Predicted AAA-ATPase HMY34_07090 PF08011 PD-(D/E)XK nuclease superfamily HMY34_07105 PF13443 Cro/C1-type HTH DNA-binding domain HMY34_07110 PF13673 Acetyltransferase (GNAT) domain HMY34_07110 PF13302 Acetyltransferase (GNAT) domain HMY34_07110 PF03352 Methyladenine glycosylase HMY34_07110 PF00117 Glutamine amidotransferase class-I HMY34_07110 PF00958 GMP synthase C terminal domain HMY34_07115 PF13635 Domain of unknown function (DUF4143) HMY34_07115 PF13173 AAA domain HMY34_07125 PF01053 Cys/Met metabolism PLP-dependent enzyme HMY34_07155 PF00437 Type II/IV secretion system protein HMY34_07160 PF01479 S4 domain HMY34_07160 PF00849 RNA pseudouridylate synthase HMY34_07180 PF13173 AAA domain HMY34_07180 PF13635 Domain of unknown function (DUF4143) HMY34_07185 PF00535 Glycosyl transferase family 2 HMY34_07195 PF00892 EamA-like transporter family HMY34_07200 PF01055 Glycosyl hydrolases family 31 HMY34_07200 PF13802 Galactose mutarotase-like HMY34_07200 PF17137 Domain of unknown function (DUF5110) HMY34_07200 PF16338 Domain of unknown function (DUF4968) HMY34_07215 PF00108 Thiolase, N-terminal domain HMY34_07215 PF02803 Thiolase, C-terminal domain HMY34_07220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HMY34_07220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HMY34_07220 PF00378 Enoyl-CoA hydratase/isomerase HMY34_07225 PF00501 AMP-binding enzyme HMY34_07225 PF13193 AMP-binding enzyme C-terminal domain HMY34_07230 PF01171 PP-loop family HMY34_07235 PF16177 Acetyl-coenzyme A synthetase N-terminus HMY34_07235 PF00501 AMP-binding enzyme HMY34_07235 PF13193 AMP-binding enzyme C-terminal domain HMY34_07270 PF04480 Protein of unknown function (DUF559) HMY34_07295 PF01636 Phosphotransferase enzyme family HMY34_07300 PF00483 Nucleotidyl transferase HMY34_07305 PF00293 NUDIX domain HMY34_07310 PF02649 Type I GTP cyclohydrolase folE2 HMY34_07330 PF01430 Hsp33 protein HMY34_07335 PF02525 Flavodoxin-like fold HMY34_07340 PF12697 Alpha/beta hydrolase family HMY34_07360 PF02686 Glu-tRNAGln amidotransferase C subunit HMY34_07365 PF02934 GatB/GatE catalytic domain HMY34_07365 PF02637 GatB domain HMY34_07370 PF01425 Amidase HMY34_07390 PF00664 ABC transporter transmembrane region HMY34_07390 PF00005 ABC transporter HMY34_07415 PF02954 Bacterial regulatory protein, Fis family HMY34_07415 PF00072 Response regulator receiver domain HMY34_07415 PF00158 Sigma-54 interaction domain HMY34_07420 PF00480 ROK family HMY34_07430 PF00849 RNA pseudouridylate synthase HMY34_07430 PF04287 tRNA pseudouridine synthase C HMY34_07435 PF00571 CBS domain HMY34_07440 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HMY34_07440 PF18381 YcaO cyclodehydratase C-terminal domain HMY34_07460 PF06940 Domain of unknown function (DUF1287) HMY34_07465 PF00355 Rieske [2Fe-2S] domain HMY34_07475 PF04751 Protein of unknown function (DUF615) HMY34_07480 PF16123 Hydroxyacylglutathione hydrolase C-terminus HMY34_07480 PF00753 Metallo-beta-lactamase superfamily HMY34_07485 PF00625 Guanylate kinase HMY34_07500 PF01479 S4 domain HMY34_07500 PF00849 RNA pseudouridylate synthase HMY34_07505 PF01641 SelR domain HMY34_07510 PF00384 Molybdopterin oxidoreductase HMY34_07510 PF01568 Molydopterin dinucleotide binding domain HMY34_07540 PF12867 DinB superfamily HMY34_07540 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_07545 PF10017 Histidine-specific methyltransferase, SAM-dependent HMY34_07550 PF00266 Aminotransferase class-V HMY34_07565 PF07730 Histidine kinase HMY34_07565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_07565 PF05231 MASE1 HMY34_07570 PF00196 Bacterial regulatory proteins, luxR family HMY34_07570 PF00072 Response regulator receiver domain HMY34_07600 PF01479 S4 domain HMY34_07605 PF03692 Putative zinc- or iron-chelating domain HMY34_07615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_07615 PF03466 LysR substrate binding domain HMY34_07620 PF01747 ATP-sulfurylase HMY34_07620 PF14306 PUA-like domain HMY34_07625 PF03544 Gram-negative bacterial TonB protein C-terminal HMY34_07630 PF06250 YhcG PDDEXK nuclease domain HMY34_07630 PF17761 DUF1016 N-terminal domain HMY34_07640 PF11127 Protein of unknown function (DUF2892) HMY34_07640 PF00581 Rhodanese-like domain HMY34_07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_07645 PF00512 His Kinase A (phospho-acceptor) domain HMY34_07645 PF00989 PAS fold HMY34_07650 PF01274 Malate synthase HMY34_07675 PF01145 SPFH domain / Band 7 family HMY34_07675 PF15975 Flotillin HMY34_07715 PF00390 Malic enzyme, N-terminal domain HMY34_07715 PF03949 Malic enzyme, NAD binding domain HMY34_07715 PF01515 Phosphate acetyl/butaryl transferase HMY34_07720 PF00171 Aldehyde dehydrogenase family HMY34_07725 PF02600 Disulfide bond formation protein DsbB HMY34_07745 PF01850 PIN domain HMY34_07750 PF07669 Eco57I restriction-modification methylase HMY34_07755 PF06616 BsuBI/PstI restriction endonuclease domain HMY34_07755 PF17728 BsuBI/PstI restriction endonuclease HTH domain HMY34_07760 PF09905 DNA-binding protein VF530 HMY34_07765 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HMY34_07780 PF13657 HipA N-terminal domain HMY34_07780 PF07804 HipA-like C-terminal domain HMY34_07840 PF00069 Protein kinase domain HMY34_07855 PF01139 tRNA-splicing ligase RtcB HMY34_07865 PF07804 HipA-like C-terminal domain HMY34_07865 PF13657 HipA N-terminal domain HMY34_07875 PF03881 Fructosamine kinase HMY34_07895 PF01987 Mitochondrial biogenesis AIM24 HMY34_07900 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HMY34_07900 PF01476 LysM domain HMY34_07905 PF03330 Lytic transglycolase HMY34_07905 PF05036 Sporulation related domain HMY34_07910 PF00682 HMGL-like HMY34_07910 PF08502 LeuA allosteric (dimerisation) domain HMY34_07915 PF01037 Lrp/AsnC ligand binding domain HMY34_07930 PF00158 Sigma-54 interaction domain HMY34_07930 PF06956 Regulator of RNA terminal phosphate cyclase HMY34_07935 PF03480 Bacterial extracellular solute-binding protein, family 7 HMY34_07940 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HMY34_07945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HMY34_07985 PF13173 AAA domain HMY34_07985 PF13635 Domain of unknown function (DUF4143) HMY34_08000 PF08240 Alcohol dehydrogenase GroES-like domain HMY34_08000 PF00107 Zinc-binding dehydrogenase HMY34_08005 PF01367 5'-3' exonuclease, C-terminal SAM fold HMY34_08005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HMY34_08005 PF00476 DNA polymerase family A HMY34_08005 PF01612 3'-5' exonuclease HMY34_08010 PF02954 Bacterial regulatory protein, Fis family HMY34_08010 PF00158 Sigma-54 interaction domain HMY34_08010 PF00072 Response regulator receiver domain HMY34_08015 PF02743 Cache domain HMY34_08015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_08015 PF00512 His Kinase A (phospho-acceptor) domain HMY34_08020 PF03330 Lytic transglycolase HMY34_08025 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HMY34_08035 PF18693 TRAM domain HMY34_08035 PF04055 Radical SAM superfamily HMY34_08035 PF00919 Uncharacterized protein family UPF0004 HMY34_08040 PF00485 Phosphoribulokinase / Uridine kinase family HMY34_08070 PF01170 Putative RNA methylase family UPF0020 HMY34_08070 PF02926 THUMP domain HMY34_08070 PF10672 S-adenosylmethionine-dependent methyltransferase HMY34_08085 PF03976 Polyphosphate kinase 2 (PPK2) HMY34_08090 PF01464 Transglycosylase SLT domain HMY34_08090 PF14718 Soluble lytic murein transglycosylase L domain HMY34_08115 PF01145 SPFH domain / Band 7 family HMY34_08115 PF16200 C-terminal region of band_7 HMY34_08125 PF00266 Aminotransferase class-V HMY34_08135 PF13368 Topoisomerase C-terminal repeat HMY34_08135 PF01751 Toprim domain HMY34_08135 PF01131 DNA topoisomerase HMY34_08140 PF01300 Telomere recombination HMY34_08150 PF00270 DEAD/DEAH box helicase HMY34_08150 PF00271 Helicase conserved C-terminal domain HMY34_08160 PF02463 RecF/RecN/SMC N terminal domain HMY34_08175 PF03167 Uracil DNA glycosylase superfamily HMY34_08180 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HMY34_08180 PF00270 DEAD/DEAH box helicase HMY34_08180 PF17191 RecG wedge domain HMY34_08190 PF00005 ABC transporter HMY34_08190 PF09383 NIL domain HMY34_08200 PF02653 Branched-chain amino acid transport system / permease component HMY34_08215 PF00005 ABC transporter HMY34_08220 PF00497 Bacterial extracellular solute-binding proteins, family 3 HMY34_08225 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_08230 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_08235 PF01810 LysE type translocator HMY34_08250 PF11842 Domain of unknown function (DUF3362) HMY34_08250 PF04055 Radical SAM superfamily HMY34_08250 PF08497 Radical SAM N-terminal HMY34_08255 PF03797 Autotransporter beta-domain HMY34_08255 PF00082 Subtilase family HMY34_08255 PF12951 Passenger-associated-transport-repeat HMY34_08290 PF03472 Autoinducer binding domain HMY34_08290 PF00196 Bacterial regulatory proteins, luxR family HMY34_08295 PF11412 Disulphide bond corrector protein DsbC HMY34_08295 PF02683 Cytochrome C biogenesis protein transmembrane region HMY34_08310 PF02445 Quinolinate synthetase A protein HMY34_08315 PF00892 EamA-like transporter family HMY34_08365 PF04055 Radical SAM superfamily HMY34_08365 PF08497 Radical SAM N-terminal HMY34_08365 PF11842 Domain of unknown function (DUF3362) HMY34_08375 PF00145 C-5 cytosine-specific DNA methylase HMY34_08400 PF00145 C-5 cytosine-specific DNA methylase HMY34_08415 PF00175 Oxidoreductase NAD-binding domain HMY34_08415 PF00111 2Fe-2S iron-sulfur cluster binding domain HMY34_08415 PF00970 Oxidoreductase FAD-binding domain HMY34_08420 PF01370 NAD dependent epimerase/dehydratase family HMY34_08420 PF02222 ATP-grasp domain HMY34_08465 PF17191 RecG wedge domain HMY34_08465 PF00270 DEAD/DEAH box helicase HMY34_08465 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HMY34_08475 PF02384 N-6 DNA Methylase HMY34_08475 PF12161 HsdM N-terminal domain HMY34_08490 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HMY34_08510 PF02445 Quinolinate synthetase A protein HMY34_08515 PF11741 AMIN domain HMY34_08515 PF01520 N-acetylmuramoyl-L-alanine amidase HMY34_08520 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HMY34_08535 PF00990 Diguanylate cyclase, GGDEF domain HMY34_08535 PF00072 Response regulator receiver domain HMY34_08550 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HMY34_08550 PF00271 Helicase conserved C-terminal domain HMY34_08550 PF04408 Helicase associated domain (HA2) HMY34_08550 PF11898 Domain of unknown function (DUF3418) HMY34_08550 PF00270 DEAD/DEAH box helicase HMY34_08555 PF02706 Chain length determinant protein HMY34_08555 PF13807 G-rich domain on putative tyrosine kinase HMY34_08555 PF13614 AAA domain HMY34_08560 PF01050 Mannose-6-phosphate isomerase HMY34_08560 PF00483 Nucleotidyl transferase HMY34_08565 PF01370 NAD dependent epimerase/dehydratase family HMY34_08570 PF16363 GDP-mannose 4,6 dehydratase HMY34_08575 PF00535 Glycosyl transferase family 2 HMY34_08605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HMY34_08610 PF00953 Glycosyl transferase family 4 HMY34_08615 PF05496 Holliday junction DNA helicase RuvB P-loop domain HMY34_08615 PF05491 RuvB C-terminal winged helix domain HMY34_08615 PF17864 RuvB AAA lid domain HMY34_08620 PF03061 Thioesterase superfamily HMY34_08625 PF01618 MotA/TolQ/ExbB proton channel family HMY34_08630 PF02472 Biopolymer transport protein ExbD/TolR HMY34_08640 PF04052 TolB amino-terminal domain HMY34_08640 PF07676 WD40-like Beta Propeller Repeat HMY34_08645 PF00691 OmpA family HMY34_08690 PF01078 Magnesium chelatase, subunit ChlI HMY34_08690 PF13335 Magnesium chelatase, subunit ChlI C-terminal HMY34_08695 PF06779 Uncharacterised MFS-type transporter YbfB HMY34_08700 PF00005 ABC transporter HMY34_08720 PF01118 Semialdehyde dehydrogenase, NAD binding domain HMY34_08720 PF02774 Semialdehyde dehydrogenase, dimerisation domain HMY34_08750 PF01119 DNA mismatch repair protein, C-terminal domain HMY34_08750 PF08676 MutL C terminal dimerisation domain HMY34_08755 PF00271 Helicase conserved C-terminal domain HMY34_08755 PF04851 Type III restriction enzyme, res subunit HMY34_08795 PF01230 HIT domain HMY34_08835 PF13291 ACT domain HMY34_08835 PF04607 Region found in RelA / SpoT proteins HMY34_08835 PF02824 TGS domain HMY34_08850 PF02091 Glycyl-tRNA synthetase alpha subunit HMY34_08855 PF05746 DALR anticodon binding domain HMY34_08855 PF02092 Glycyl-tRNA synthetase beta subunit HMY34_08860 PF00892 EamA-like transporter family HMY34_08865 PF01266 FAD dependent oxidoreductase HMY34_08885 PF00931 NB-ARC domain HMY34_08885 PF00400 WD domain, G-beta repeat HMY34_08930 PF00920 Dehydratase family HMY34_08950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_08950 PF00672 HAMP domain HMY34_08950 PF00512 His Kinase A (phospho-acceptor) domain HMY34_08955 PF00072 Response regulator receiver domain HMY34_08955 PF00486 Transcriptional regulatory protein, C terminal HMY34_08960 PF14492 Elongation Factor G, domain II HMY34_08960 PF03144 Elongation factor Tu domain 2 HMY34_08960 PF00009 Elongation factor Tu GTP binding domain HMY34_08960 PF00679 Elongation factor G C-terminus HMY34_08960 PF03764 Elongation factor G, domain IV HMY34_08970 PF09562 LlaMI restriction endonuclease HMY34_08975 PF01381 Helix-turn-helix HMY34_08975 PF00145 C-5 cytosine-specific DNA methylase HMY34_08980 PF12848 ABC transporter HMY34_08980 PF00005 ABC transporter HMY34_08985 PF02661 Fic/DOC family HMY34_08985 PF13784 Fic/DOC family N-terminal HMY34_08990 PF00270 DEAD/DEAH box helicase HMY34_08990 PF00271 Helicase conserved C-terminal domain HMY34_08990 PF18074 Primosomal protein N C-terminal domain HMY34_08990 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HMY34_08990 PF17764 3′ DNA-binding domain (3′BD) HMY34_08995 PF01850 PIN domain HMY34_09005 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_09015 PF01370 NAD dependent epimerase/dehydratase family HMY34_09020 PF01259 SAICAR synthetase HMY34_09025 PF00731 AIR carboxylase HMY34_09050 PF02222 ATP-grasp domain HMY34_09050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HMY34_09060 PF05175 Methyltransferase small domain HMY34_09065 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HMY34_09070 PF04542 Sigma-70 region 2 HMY34_09070 PF08281 Sigma-70, region 4 HMY34_09080 PF00082 Subtilase family HMY34_09090 PF01218 Coproporphyrinogen III oxidase HMY34_09100 PF00753 Metallo-beta-lactamase superfamily HMY34_09105 PF01925 Sulfite exporter TauE/SafE HMY34_09120 PF03900 Porphobilinogen deaminase, C-terminal domain HMY34_09120 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HMY34_09125 PF02602 Uroporphyrinogen-III synthase HemD HMY34_09140 PF03949 Malic enzyme, NAD binding domain HMY34_09140 PF00390 Malic enzyme, N-terminal domain HMY34_09145 PF13181 Tetratricopeptide repeat HMY34_09145 PF01435 Peptidase family M48 HMY34_09150 PF01197 Ribosomal protein L31 HMY34_09155 PF07977 FabA-like domain HMY34_09210 PF08447 PAS fold HMY34_09210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HMY34_09225 PF00691 OmpA family HMY34_09225 PF05736 OprF membrane domain HMY34_09240 PF01026 TatD related DNase HMY34_09245 PF00149 Calcineurin-like phosphoesterase HMY34_09255 PF01207 Dihydrouridine synthase (Dus) HMY34_09260 PF12557 Cob(I)alamin adenosyltransferase N terminal HMY34_09260 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HMY34_09275 PF01979 Amidohydrolase family HMY34_09280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HMY34_09280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HMY34_09340 PF17862 AAA+ lid domain HMY34_09340 PF06480 FtsH Extracellular HMY34_09340 PF01434 Peptidase family M41 HMY34_09340 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_09350 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system HMY34_09355 PF02401 LytB protein HMY34_09370 PF00343 Carbohydrate phosphorylase HMY34_09375 PF08323 Starch synthase catalytic domain HMY34_09375 PF00534 Glycosyl transferases group 1 HMY34_09380 PF00128 Alpha amylase, catalytic domain HMY34_09380 PF02806 Alpha amylase, C-terminal all-beta domain HMY34_09380 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HMY34_09385 PF02446 4-alpha-glucanotransferase HMY34_09395 PF00483 Nucleotidyl transferase HMY34_09400 PF02685 Glucokinase HMY34_09405 PF00342 Phosphoglucose isomerase HMY34_09410 PF00114 Pilin (bacterial filament) HMY34_09410 PF07963 Prokaryotic N-terminal methylation motif HMY34_09415 PF02386 Cation transport protein HMY34_09420 PF02254 TrkA-N domain HMY34_09420 PF02080 TrkA-C domain HMY34_09430 PF00145 C-5 cytosine-specific DNA methylase HMY34_09435 PF00158 Sigma-54 interaction domain HMY34_09435 PF00072 Response regulator receiver domain HMY34_09435 PF02954 Bacterial regulatory protein, Fis family HMY34_09440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_09440 PF00512 His Kinase A (phospho-acceptor) domain HMY34_09440 PF00672 HAMP domain HMY34_09440 PF00989 PAS fold HMY34_09450 PF01189 16S rRNA methyltransferase RsmB/F HMY34_09450 PF01029 NusB family HMY34_09460 PF01327 Polypeptide deformylase HMY34_09465 PF01476 LysM domain HMY34_09470 PF02233 NAD(P) transhydrogenase beta subunit HMY34_09475 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HMY34_09480 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HMY34_09480 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HMY34_09485 PF00691 OmpA family HMY34_09495 PF03819 MazG nucleotide pyrophosphohydrolase domain HMY34_09500 PF01330 RuvA N terminal domain HMY34_09500 PF07499 RuvA, C-terminal domain HMY34_09505 PF02075 Crossover junction endodeoxyribonuclease RuvC HMY34_09510 PF01709 Transcriptional regulator HMY34_09525 PF00301 Rubredoxin HMY34_09530 PF12323 Helix-turn-helix domain HMY34_09530 PF01385 Probable transposase HMY34_09530 PF07282 Putative transposase DNA-binding domain HMY34_09550 PF01557 Fumarylacetoacetate (FAA) hydrolase family HMY34_09555 PF00994 Probable molybdopterin binding domain HMY34_09555 PF03454 MoeA C-terminal region (domain IV) HMY34_09555 PF03453 MoeA N-terminal region (domain I and II) HMY34_09560 PF00005 ABC transporter HMY34_09565 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_09570 PF12849 PBP superfamily domain HMY34_09580 PF17841 BID domain of Bartonella effector protein (Bep) HMY34_09580 PF02661 Fic/DOC family HMY34_09590 PF12161 HsdM N-terminal domain HMY34_09590 PF02384 N-6 DNA Methylase HMY34_09615 PF08463 EcoEI R protein C-terminal HMY34_09615 PF00271 Helicase conserved C-terminal domain HMY34_09615 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HMY34_09615 PF04851 Type III restriction enzyme, res subunit HMY34_09620 PF00072 Response regulator receiver domain HMY34_09620 PF00196 Bacterial regulatory proteins, luxR family HMY34_09640 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HMY34_09650 PF01142 tRNA pseudouridine synthase D (TruD) HMY34_09660 PF00497 Bacterial extracellular solute-binding proteins, family 3 HMY34_09660 PF01627 Hpt domain HMY34_09660 PF00512 His Kinase A (phospho-acceptor) domain HMY34_09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_09660 PF00072 Response regulator receiver domain HMY34_09670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_09670 PF00512 His Kinase A (phospho-acceptor) domain HMY34_09670 PF01627 Hpt domain HMY34_09670 PF00072 Response regulator receiver domain HMY34_09690 PF02589 LUD domain HMY34_09695 PF11870 Domain of unknown function (DUF3390) HMY34_09695 PF02589 LUD domain HMY34_09695 PF13183 4Fe-4S dicluster domain HMY34_09700 PF02754 Cysteine-rich domain HMY34_09705 PF07729 FCD domain HMY34_09705 PF00392 Bacterial regulatory proteins, gntR family HMY34_09710 PF02652 L-lactate permease HMY34_09715 PF09330 D-lactate dehydrogenase, membrane binding HMY34_09715 PF01565 FAD binding domain HMY34_09740 PF02600 Disulfide bond formation protein DsbB HMY34_09745 PF06463 Molybdenum Cofactor Synthesis C HMY34_09745 PF04055 Radical SAM superfamily HMY34_09750 PF00475 Imidazoleglycerol-phosphate dehydratase HMY34_09765 PF00117 Glutamine amidotransferase class-I HMY34_09780 PF02481 DNA recombination-mediator protein A HMY34_09780 PF17782 DprA winged helix domain HMY34_09785 PF04361 Protein of unknown function (DUF494) HMY34_09790 PF17284 Spermidine synthase tetramerisation domain HMY34_09795 PF00145 C-5 cytosine-specific DNA methylase HMY34_09795 PF13411 MerR HTH family regulatory protein HMY34_09800 PF18284 DNA methylase N-terminal domain HMY34_09800 PF00145 C-5 cytosine-specific DNA methylase HMY34_09810 PF07152 YaeQ protein HMY34_09820 PF04976 DMSO reductase anchor subunit (DmsC) HMY34_09825 PF13247 4Fe-4S dicluster domain HMY34_09825 PF12800 4Fe-4S binding domain HMY34_09830 PF01568 Molydopterin dinucleotide binding domain HMY34_09830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HMY34_09830 PF00384 Molybdopterin oxidoreductase HMY34_09840 PF12323 Helix-turn-helix domain HMY34_09840 PF01385 Probable transposase HMY34_09840 PF07282 Putative transposase DNA-binding domain HMY34_09860 PF07995 Glucose / Sorbosone dehydrogenase HMY34_09885 PF00005 ABC transporter HMY34_09890 PF09905 DNA-binding protein VF530 HMY34_09915 PF01734 Patatin-like phospholipase HMY34_09930 PF03372 Endonuclease/Exonuclease/phosphatase family HMY34_09935 PF01432 Peptidase family M3 HMY34_09940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_09940 PF00204 DNA gyrase B HMY34_09940 PF00986 DNA gyrase B subunit, carboxyl terminus HMY34_09940 PF18053 DNA gyrase B subunit insert domain HMY34_09940 PF01751 Toprim domain HMY34_09945 PF02463 RecF/RecN/SMC N terminal domain HMY34_09950 PF02767 DNA polymerase III beta subunit, central domain HMY34_09950 PF02768 DNA polymerase III beta subunit, C-terminal domain HMY34_09950 PF00712 DNA polymerase III beta subunit, N-terminal domain HMY34_09955 PF11638 DnaA N-terminal domain HMY34_09955 PF08299 Bacterial dnaA protein helix-turn-helix HMY34_09955 PF00308 Bacterial dnaA protein HMY34_09960 PF00468 Ribosomal protein L34 HMY34_09965 PF00825 Ribonuclease P HMY34_09970 PF14849 YidC periplasmic domain HMY34_09970 PF02096 60Kd inner membrane protein HMY34_09975 PF10396 GTP-binding protein TrmE N-terminus HMY34_09975 PF01926 50S ribosome-binding GTPase HMY34_09975 PF12631 MnmE helical domain HMY34_10005 PF01420 Type I restriction modification DNA specificity domain HMY34_10015 PF02384 N-6 DNA Methylase HMY34_10020 PF04055 Radical SAM superfamily HMY34_10055 PF07282 Putative transposase DNA-binding domain HMY34_10055 PF01385 Probable transposase HMY34_10055 PF12323 Helix-turn-helix domain HMY34_10060 PF02899 Phage integrase, N-terminal SAM-like domain HMY34_10060 PF00589 Phage integrase family HMY34_10070 PF01678 Diaminopimelate epimerase HMY34_10075 PF01206 Sulfurtransferase TusA HMY34_10080 PF00155 Aminotransferase class I and II HMY34_10105 PF00106 short chain dehydrogenase HMY34_10125 PF00994 Probable molybdopterin binding domain HMY34_10140 PF01139 tRNA-splicing ligase RtcB HMY34_10170 PF13614 AAA domain HMY34_10190 PF02568 Thiamine biosynthesis protein (ThiI) HMY34_10190 PF02926 THUMP domain HMY34_10195 PF00570 HRDC domain HMY34_10195 PF01612 3'-5' exonuclease HMY34_10245 PF12848 ABC transporter HMY34_10245 PF00005 ABC transporter HMY34_10245 PF16326 ABC transporter C-terminal domain HMY34_10255 PF02630 SCO1/SenC HMY34_10265 PF02622 Uncharacterized ACR, COG1678 HMY34_10270 PF03652 Holliday junction resolvase HMY34_10275 PF00156 Phosphoribosyl transferase domain HMY34_10280 PF00300 Histidine phosphatase superfamily (branch 1) HMY34_10290 PF04542 Sigma-70 region 2 HMY34_10290 PF04545 Sigma-70, region 4 HMY34_10300 PF02086 D12 class N6 adenine-specific DNA methyltransferase HMY34_10330 PF13173 AAA domain HMY34_10330 PF13635 Domain of unknown function (DUF4143) HMY34_10335 PF00588 SpoU rRNA Methylase family HMY34_10340 PF06574 FAD synthetase HMY34_10340 PF01687 Riboflavin kinase HMY34_10345 PF00294 pfkB family carbohydrate kinase HMY34_10365 PF01726 LexA DNA binding domain HMY34_10365 PF00717 Peptidase S24-like HMY34_10385 PF05114 Protein of unknown function (DUF692) HMY34_10395 PF00317 Ribonucleotide reductase, all-alpha domain HMY34_10395 PF03477 ATP cone domain HMY34_10395 PF02867 Ribonucleotide reductase, barrel domain HMY34_10405 PF00145 C-5 cytosine-specific DNA methylase HMY34_10410 PF00145 C-5 cytosine-specific DNA methylase HMY34_10415 PF00268 Ribonucleotide reductase, small chain HMY34_10425 PF00596 Class II Aldolase and Adducin N-terminal domain HMY34_10430 PF03079 ARD/ARD' family HMY34_10440 PF00132 Bacterial transferase hexapeptide (six repeats) HMY34_10440 PF14602 Hexapeptide repeat of succinyl-transferase HMY34_10440 PF12804 MobA-like NTP transferase domain HMY34_10445 PF01380 SIS domain HMY34_10450 PF01740 STAS domain HMY34_10450 PF00916 Sulfate permease family HMY34_10460 PF01967 MoaC family HMY34_10465 PF13180 PDZ domain HMY34_10465 PF03572 Peptidase family S41 HMY34_10470 PF01551 Peptidase family M23 HMY34_10470 PF01476 LysM domain HMY34_10485 PF00462 Glutaredoxin HMY34_10490 PF02556 Preprotein translocase subunit SecB HMY34_10495 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HMY34_10495 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HMY34_10500 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HMY34_10500 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HMY34_10510 PF02566 OsmC-like protein HMY34_10515 PF02675 S-adenosylmethionine decarboxylase HMY34_10520 PF00877 NlpC/P60 family HMY34_10530 PF02915 Rubrerythrin HMY34_10545 PF01627 Hpt domain HMY34_10545 PF00072 Response regulator receiver domain HMY34_10545 PF18415 Histidine kinase receptor ArcB trans-membrane domain HMY34_10545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_10545 PF00512 His Kinase A (phospho-acceptor) domain HMY34_10545 PF00989 PAS fold HMY34_10560 PF00348 Polyprenyl synthetase HMY34_10565 PF00829 Ribosomal prokaryotic L21 protein HMY34_10570 PF01016 Ribosomal L27 protein HMY34_10575 PF01926 50S ribosome-binding GTPase HMY34_10575 PF01018 GTP1/OBG HMY34_10580 PF00696 Amino acid kinase family HMY34_10580 PF01472 PUA domain HMY34_10585 PF04379 ApaG domain HMY34_10590 PF01551 Peptidase family M23 HMY34_10590 PF10145 Phage-related minor tail protein HMY34_10590 PF01464 Transglycosylase SLT domain HMY34_10595 PF01063 Amino-transferase class IV HMY34_10605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HMY34_10640 PF00512 His Kinase A (phospho-acceptor) domain HMY34_10640 PF18698 Histidine kinase sensor domain HMY34_10640 PF00672 HAMP domain HMY34_10640 PF00989 PAS fold HMY34_10640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_10645 PF00072 Response regulator receiver domain HMY34_10645 PF00486 Transcriptional regulatory protein, C terminal HMY34_10650 PF00929 Exonuclease HMY34_10655 PF01192 RNA polymerase Rpb6 HMY34_10660 PF04607 Region found in RelA / SpoT proteins HMY34_10660 PF13291 ACT domain HMY34_10660 PF02824 TGS domain HMY34_10665 PF01042 Endoribonuclease L-PSP HMY34_10670 PF02541 Ppx/GppA phosphatase family HMY34_10675 PF00581 Rhodanese-like domain HMY34_10680 PF13686 DsrE/DsrF/DrsH-like family HMY34_10690 PF10518 TAT (twin-arginine translocation) pathway signal sequence HMY34_10690 PF00149 Calcineurin-like phosphoesterase HMY34_10695 PF00072 Response regulator receiver domain HMY34_10700 PF00072 Response regulator receiver domain HMY34_10710 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HMY34_10710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HMY34_10720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_10720 PF01627 Hpt domain HMY34_10720 PF00072 Response regulator receiver domain HMY34_10720 PF01584 CheW-like domain HMY34_10720 PF02895 Signal transducing histidine kinase, homodimeric domain HMY34_10735 PF00149 Calcineurin-like phosphoesterase HMY34_10740 PF01027 Inhibitor of apoptosis-promoting Bax1 HMY34_10770 PF05724 Thiopurine S-methyltransferase (TPMT) HMY34_10780 PF01809 Putative membrane protein insertion efficiency factor HMY34_10795 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HMY34_10800 PF00293 NUDIX domain HMY34_10800 PF01467 Cytidylyltransferase-like HMY34_10810 PF00210 Ferritin-like domain HMY34_10820 PF01502 Phosphoribosyl-AMP cyclohydrolase HMY34_10830 PF08011 PD-(D/E)XK nuclease superfamily HMY34_10830 PF09820 Predicted AAA-ATPase HMY34_10840 PF07724 AAA domain (Cdc48 subfamily) HMY34_10840 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_10840 PF10431 C-terminal, D2-small domain, of ClpB protein HMY34_10845 PF00227 Proteasome subunit HMY34_10855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_10855 PF00512 His Kinase A (phospho-acceptor) domain HMY34_10855 PF00672 HAMP domain HMY34_10855 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_10855 PF00072 Response regulator receiver domain HMY34_10855 PF01627 Hpt domain HMY34_10860 PF08335 GlnD PII-uridylyltransferase HMY34_10860 PF03710 Glutamate-ammonia ligase adenylyltransferase HMY34_10875 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH HMY34_10905 PF01168 Alanine racemase, N-terminal domain HMY34_10910 PF00437 Type II/IV secretion system protein HMY34_10915 PF00437 Type II/IV secretion system protein HMY34_10920 PF00437 Type II/IV secretion system protein HMY34_10935 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus HMY34_10935 PF00361 Proton-conducting membrane transporter HMY34_10940 PF00361 Proton-conducting membrane transporter HMY34_10945 PF00361 Proton-conducting membrane transporter HMY34_10945 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HMY34_10950 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HMY34_10955 PF00361 Proton-conducting membrane transporter HMY34_10955 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HMY34_10960 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) HMY34_10975 PF02321 Outer membrane efflux protein HMY34_11000 PF04542 Sigma-70 region 2 HMY34_11000 PF08281 Sigma-70, region 4 HMY34_11065 PF01435 Peptidase family M48 HMY34_11070 PF04262 Glutamate-cysteine ligase HMY34_11075 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HMY34_11080 PF02594 Uncharacterised ACR, YggU family COG1872 HMY34_11085 PF02325 YGGT family HMY34_11090 PF03807 NADP oxidoreductase coenzyme F420-dependent HMY34_11090 PF14748 Pyrroline-5-carboxylate reductase dimerisation HMY34_11100 PF01136 Peptidase family U32 HMY34_11100 PF16325 Peptidase family U32 C-terminal domain HMY34_11105 PF11867 Domain of unknown function (DUF3387) HMY34_11105 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HMY34_11105 PF18766 SWI2/SNF2 ATPase HMY34_11125 PF10832 Protein of unknown function (DUF2559) HMY34_11135 PF01420 Type I restriction modification DNA specificity domain HMY34_11140 PF02384 N-6 DNA Methylase HMY34_11140 PF02384 N-6 DNA Methylase HMY34_11165 PF00753 Metallo-beta-lactamase superfamily HMY34_11170 PF01747 ATP-sulfurylase HMY34_11170 PF14306 PUA-like domain HMY34_11175 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit HMY34_11175 PF13187 4Fe-4S dicluster domain HMY34_11180 PF00890 FAD binding domain HMY34_11185 PF05191 Adenylate kinase, active site lid HMY34_11190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HMY34_11200 PF00365 Phosphofructokinase HMY34_11210 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HMY34_11220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HMY34_11225 PF02754 Cysteine-rich domain HMY34_11230 PF13183 4Fe-4S dicluster domain HMY34_11230 PF13085 2Fe-2S iron-sulfur cluster binding domain HMY34_11235 PF01593 Flavin containing amine oxidoreductase HMY34_11240 PF01593 Flavin containing amine oxidoreductase HMY34_11245 PF00850 Histone deacetylase domain HMY34_11250 PF00583 Acetyltransferase (GNAT) family HMY34_11250 PF13607 Succinyl-CoA ligase like flavodoxin domain HMY34_11250 PF13380 CoA binding domain HMY34_11255 PF08543 Phosphomethylpyrimidine kinase HMY34_11270 PF02581 Thiamine monophosphate synthase HMY34_11280 PF00202 Aminotransferase class-III HMY34_11285 PF13180 PDZ domain HMY34_11295 PF04452 RNA methyltransferase HMY34_11300 PF02219 Methylenetetrahydrofolate reductase HMY34_11305 PF05221 S-adenosyl-L-homocysteine hydrolase HMY34_11305 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HMY34_11310 PF02773 S-adenosylmethionine synthetase, C-terminal domain HMY34_11310 PF00438 S-adenosylmethionine synthetase, N-terminal domain HMY34_11310 PF02772 S-adenosylmethionine synthetase, central domain HMY34_11315 PF02779 Transketolase, pyrimidine binding domain HMY34_11315 PF02780 Transketolase, C-terminal domain HMY34_11315 PF00456 Transketolase, thiamine diphosphate binding domain HMY34_11320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HMY34_11320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HMY34_11325 PF00162 Phosphoglycerate kinase HMY34_11330 PF00224 Pyruvate kinase, barrel domain HMY34_11330 PF02887 Pyruvate kinase, alpha/beta domain HMY34_11335 PF01116 Fructose-bisphosphate aldolase class-II HMY34_11345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HMY34_11350 PF00551 Formyl transferase HMY34_11355 PF02390 Putative methyltransferase HMY34_11365 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HMY34_11365 PF01676 Metalloenzyme superfamily HMY34_11370 PF00902 Sec-independent protein translocase protein (TatC) HMY34_11375 PF02416 mttA/Hcf106 family HMY34_11380 PF02416 mttA/Hcf106 family HMY34_11385 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HMY34_11395 PF00977 Histidine biosynthesis protein HMY34_11400 PF01555 DNA methylase HMY34_11410 PF00977 Histidine biosynthesis protein HMY34_11420 PF08331 Domain of unknown function (DUF1730) HMY34_11430 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HMY34_11430 PF01243 Pyridoxamine 5'-phosphate oxidase HMY34_11450 PF00580 UvrD/REP helicase N-terminal domain HMY34_11450 PF13361 UvrD-like helicase C-terminal domain HMY34_11455 PF09194 Restriction endonuclease BsobI HMY34_11460 PF00145 C-5 cytosine-specific DNA methylase HMY34_11465 PF00145 C-5 cytosine-specific DNA methylase HMY34_11470 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HMY34_11480 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HMY34_11490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HMY34_11490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HMY34_11495 PF01022 Bacterial regulatory protein, arsR family HMY34_11500 PF12950 TaqI-like C-terminal specificity domain HMY34_11500 PF07669 Eco57I restriction-modification methylase HMY34_11510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HMY34_11515 PF00664 ABC transporter transmembrane region HMY34_11515 PF00005 ABC transporter HMY34_11520 PF06123 Inner membrane protein CreD HMY34_11525 PF01979 Amidohydrolase family HMY34_11530 PF02608 ABC transporter substrate-binding protein PnrA-like HMY34_11535 PF02653 Branched-chain amino acid transport system / permease component HMY34_11540 PF02653 Branched-chain amino acid transport system / permease component HMY34_11545 PF00005 ABC transporter HMY34_11555 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HMY34_11555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HMY34_11560 PF01799 [2Fe-2S] binding domain HMY34_11560 PF00111 2Fe-2S iron-sulfur cluster binding domain HMY34_11570 PF00440 Bacterial regulatory proteins, tetR family HMY34_11570 PF08362 YcdC-like protein, C-terminal region HMY34_11575 PF00576 HIUase/Transthyretin family HMY34_11590 PF09349 OHCU decarboxylase HMY34_11590 PF01014 Uricase HMY34_11595 PF03561 Allantoicase repeat HMY34_11600 PF04115 Ureidoglycolate lyase HMY34_11605 PF00860 Permease family HMY34_11610 PF01979 Amidohydrolase family HMY34_11620 PF01774 UreD urease accessory protein HMY34_11625 PF00547 Urease, gamma subunit HMY34_11630 PF00699 Urease beta subunit HMY34_11635 PF01979 Amidohydrolase family HMY34_11635 PF00449 Urease alpha-subunit, N-terminal domain HMY34_11650 PF02384 N-6 DNA Methylase HMY34_11650 PF12161 HsdM N-terminal domain HMY34_11655 PF06250 YhcG PDDEXK nuclease domain HMY34_11655 PF17761 DUF1016 N-terminal domain HMY34_11680 PF18766 SWI2/SNF2 ATPase HMY34_11680 PF11867 Domain of unknown function (DUF3387) HMY34_11680 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HMY34_11690 PF02814 UreE urease accessory protein, N-terminal domain HMY34_11690 PF05194 UreE urease accessory protein, C-terminal domain HMY34_11695 PF01730 UreF HMY34_11700 PF02492 CobW/HypB/UreG, nucleotide-binding domain HMY34_11705 PF04380 Membrane fusogenic activity HMY34_11710 PF00543 Nitrogen regulatory protein P-II HMY34_11715 PF00909 Ammonium Transporter Family HMY34_11730 PF12693 GspL periplasmic domain HMY34_11730 PF05134 Type II secretion system (T2SS), protein L HMY34_11735 PF03934 Type II secretion system (T2SS), protein K HMY34_11740 PF01464 Transglycosylase SLT domain HMY34_11740 PF14718 Soluble lytic murein transglycosylase L domain HMY34_11750 PF03193 RsgA GTPase HMY34_11760 PF01435 Peptidase family M48 HMY34_11765 PF00929 Exonuclease HMY34_11770 PF01385 Probable transposase HMY34_11770 PF07282 Putative transposase DNA-binding domain HMY34_11770 PF12323 Helix-turn-helix domain HMY34_11775 PF13173 AAA domain HMY34_11775 PF13635 Domain of unknown function (DUF4143) HMY34_11795 PF17863 AAA lid domain HMY34_11795 PF07726 ATPase family associated with various cellular activities (AAA) HMY34_11810 PF05661 Protein of unknown function (DUF808) HMY34_11815 PF00561 alpha/beta hydrolase fold HMY34_11820 PF02580 D-Tyr-tRNA(Tyr) deacylase HMY34_11870 PF07690 Major Facilitator Superfamily HMY34_11880 PF00583 Acetyltransferase (GNAT) family HMY34_11880 PF00696 Amino acid kinase family HMY34_11885 PF13580 SIS domain HMY34_11890 PF02021 Uncharacterised protein family UPF0102 HMY34_11895 PF04348 LppC putative lipoprotein HMY34_11900 PF03030 Inorganic H+ pyrophosphatase HMY34_11905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HMY34_11915 PF00719 Inorganic pyrophosphatase HMY34_11920 PF03717 Penicillin-binding Protein dimerisation domain HMY34_11920 PF00905 Penicillin binding protein transpeptidase domain HMY34_11925 PF01098 Cell cycle protein HMY34_11930 PF13406 Transglycosylase SLT domain HMY34_11935 PF05036 Sporulation related domain HMY34_11935 PF03330 Lytic transglycolase HMY34_11940 PF00768 D-alanyl-D-alanine carboxypeptidase HMY34_11940 PF07943 Penicillin-binding protein 5, C-terminal domain HMY34_11945 PF04359 Protein of unknown function (DUF493) HMY34_11950 PF03099 Biotin/lipoate A/B protein ligase family HMY34_11955 PF03232 Ubiquinone biosynthesis protein COQ7 HMY34_11960 PF01323 DSBA-like thioredoxin domain HMY34_11965 PF01578 Cytochrome C assembly protein HMY34_11970 PF05140 ResB-like family HMY34_11975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HMY34_11980 PF01926 50S ribosome-binding GTPase HMY34_11985 PF13180 PDZ domain HMY34_11985 PF00595 PDZ domain HMY34_11990 PF00226 DnaJ domain HMY34_11990 PF01556 DnaJ C terminal domain HMY34_11995 PF03755 YicC-like family, N-terminal region HMY34_11995 PF08340 Domain of unknown function (DUF1732) HMY34_12010 PF08334 Type II secretion system (T2SS), protein G HMY34_12010 PF07963 Prokaryotic N-terminal methylation motif HMY34_12015 PF12019 Type II transport protein GspH HMY34_12015 PF07963 Prokaryotic N-terminal methylation motif HMY34_12020 PF07963 Prokaryotic N-terminal methylation motif HMY34_12020 PF02501 Type II secretion system (T2SS), protein I HMY34_12025 PF07963 Prokaryotic N-terminal methylation motif HMY34_12025 PF11612 Type II secretion system (T2SS), protein J HMY34_12035 PF00873 AcrB/AcrD/AcrF family HMY34_12065 PF02424 ApbE family HMY34_12085 PF07670 Nucleoside recognition HMY34_12085 PF07664 Ferrous iron transport protein B C terminus HMY34_12085 PF02421 Ferrous iron transport protein B HMY34_12100 PF00849 RNA pseudouridylate synthase HMY34_12110 PF08019 Phosphoethanolamine transferase EptA/EptB HMY34_12110 PF00884 Sulfatase HMY34_12115 PF01292 Prokaryotic cytochrome b561 HMY34_12135 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_12135 PF10518 TAT (twin-arginine translocation) pathway signal sequence HMY34_12135 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding HMY34_12155 PF09086 Domain of unknown function (DUF1924) HMY34_12200 PF00873 AcrB/AcrD/AcrF family HMY34_12220 PF00072 Response regulator receiver domain HMY34_12220 PF00486 Transcriptional regulatory protein, C terminal HMY34_12225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_12235 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_12235 PF00672 HAMP domain HMY34_12235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_12235 PF00072 Response regulator receiver domain HMY34_12235 PF01627 Hpt domain HMY34_12235 PF00512 His Kinase A (phospho-acceptor) domain HMY34_12265 PF03958 Bacterial type II/III secretion system short domain HMY34_12265 PF00263 Bacterial type II and III secretion system protein HMY34_12280 PF09312 SurA N-terminal domain HMY34_12280 PF00639 PPIC-type PPIASE domain HMY34_12290 PF14524 Wzt C-terminal domain HMY34_12290 PF00005 ABC transporter HMY34_12305 PF00535 Glycosyl transferase family 2 HMY34_12320 PF00535 Glycosyl transferase family 2 HMY34_12325 PF00535 Glycosyl transferase family 2 HMY34_12330 PF00572 Ribosomal protein L13 HMY34_12335 PF00380 Ribosomal protein S9/S16 HMY34_12340 PF00267 Gram-negative porin HMY34_12350 PF05685 Putative restriction endonuclease HMY34_12355 PF02754 Cysteine-rich domain HMY34_12355 PF13183 4Fe-4S dicluster domain HMY34_12365 PF00909 Ammonium Transporter Family HMY34_12390 PF00873 AcrB/AcrD/AcrF family HMY34_12405 PF08534 Redoxin HMY34_12410 PF01053 Cys/Met metabolism PLP-dependent enzyme HMY34_12415 PF06827 Zinc finger found in FPG and IleRS HMY34_12415 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HMY34_12415 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HMY34_12425 PF01207 Dihydrouridine synthase (Dus) HMY34_12445 PF07556 Protein of unknown function (DUF1538) HMY34_12450 PF03061 Thioesterase superfamily HMY34_12460 PF05746 DALR anticodon binding domain HMY34_12460 PF00750 tRNA synthetases class I (R) HMY34_12460 PF03485 Arginyl tRNA synthetase N terminal domain HMY34_12510 PF13180 PDZ domain HMY34_12520 PF00459 Inositol monophosphatase family HMY34_12525 PF00145 C-5 cytosine-specific DNA methylase HMY34_12535 PF00293 NUDIX domain HMY34_12545 PF13419 Haloacid dehalogenase-like hydrolase HMY34_12555 PF01385 Probable transposase HMY34_12555 PF07282 Putative transposase DNA-binding domain HMY34_12555 PF12323 Helix-turn-helix domain HMY34_12565 PF00175 Oxidoreductase NAD-binding domain HMY34_12565 PF00042 Globin HMY34_12565 PF00970 Oxidoreductase FAD-binding domain HMY34_12575 PF00512 His Kinase A (phospho-acceptor) domain HMY34_12575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_12575 PF02743 Cache domain HMY34_12580 PF01740 STAS domain HMY34_12580 PF00916 Sulfate permease family HMY34_12605 PF00936 BMC domain HMY34_12610 PF00936 BMC domain HMY34_12635 PF00101 Ribulose bisphosphate carboxylase, small chain HMY34_12640 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain HMY34_12640 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain HMY34_12655 PF01555 DNA methylase HMY34_12655 PF18273 Type III R-M EcoP15I C-terminal domain HMY34_12660 PF06470 SMC proteins Flexible Hinge Domain HMY34_12660 PF02463 RecF/RecN/SMC N terminal domain HMY34_12675 PF01300 Telomere recombination HMY34_12685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_12685 PF03466 LysR substrate binding domain HMY34_12715 PF03334 Na+/H+ antiporter subunit HMY34_12730 PF00361 Proton-conducting membrane transporter HMY34_12735 PF00361 Proton-conducting membrane transporter HMY34_12740 PF00361 Proton-conducting membrane transporter HMY34_12745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_12745 PF00512 His Kinase A (phospho-acceptor) domain HMY34_12745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_12745 PF00672 HAMP domain HMY34_12745 PF00072 Response regulator receiver domain HMY34_12745 PF01627 Hpt domain HMY34_12750 PF00689 Cation transporting ATPase, C-terminus HMY34_12750 PF00690 Cation transporter/ATPase, N-terminus HMY34_12755 PF00462 Glutaredoxin HMY34_12755 PF08534 Redoxin HMY34_12760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HMY34_12760 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_12775 PF07075 Protein of unknown function (DUF1343) HMY34_12815 PF11973 NQRA C-terminal domain HMY34_12815 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HMY34_12820 PF03116 NQR2, RnfD, RnfE family HMY34_12825 PF04205 FMN-binding domain HMY34_12830 PF02508 Rnf-Nqr subunit, membrane protein HMY34_12835 PF02508 Rnf-Nqr subunit, membrane protein HMY34_12840 PF00970 Oxidoreductase FAD-binding domain HMY34_12840 PF00111 2Fe-2S iron-sulfur cluster binding domain HMY34_12840 PF00175 Oxidoreductase NAD-binding domain HMY34_12850 PF01743 Poly A polymerase head domain HMY34_12850 PF00571 CBS domain HMY34_12865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HMY34_12875 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HMY34_12875 PF02843 Phosphoribosylglycinamide synthetase, C domain HMY34_12875 PF02844 Phosphoribosylglycinamide synthetase, N domain HMY34_12885 PF01555 DNA methylase HMY34_12955 PF02579 Dinitrogenase iron-molybdenum cofactor HMY34_12955 PF04055 Radical SAM superfamily HMY34_12960 PF12838 4Fe-4S dicluster domain HMY34_12970 PF00753 Metallo-beta-lactamase superfamily HMY34_12970 PF00258 Flavodoxin HMY34_12975 PF00111 2Fe-2S iron-sulfur cluster binding domain HMY34_12980 PF00111 2Fe-2S iron-sulfur cluster binding domain HMY34_12990 PF04891 NifQ HMY34_12995 PF03747 ADP-ribosylglycohydrolase HMY34_13005 PF03747 ADP-ribosylglycohydrolase HMY34_13010 PF02082 Transcriptional regulator HMY34_13015 PF01521 Iron-sulphur cluster biosynthesis HMY34_13020 PF01592 NifU-like N terminal domain HMY34_13020 PF01106 NifU-like domain HMY34_13020 PF04324 BFD-like [2Fe-2S] binding domain HMY34_13030 PF00266 Aminotransferase class-V HMY34_13040 PF09820 Predicted AAA-ATPase HMY34_13040 PF08011 PD-(D/E)XK nuclease superfamily HMY34_13045 PF00270 DEAD/DEAH box helicase HMY34_13045 PF04408 Helicase associated domain (HA2) HMY34_13045 PF00271 Helicase conserved C-terminal domain HMY34_13045 PF08482 ATP-dependent helicase C-terminal HMY34_13055 PF00158 Sigma-54 interaction domain HMY34_13055 PF13185 GAF domain HMY34_13055 PF02954 Bacterial regulatory protein, Fis family HMY34_13060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_13060 PF00989 PAS fold HMY34_13065 PF02508 Rnf-Nqr subunit, membrane protein HMY34_13070 PF04060 Putative Fe-S cluster HMY34_13075 PF08011 PD-(D/E)XK nuclease superfamily HMY34_13075 PF09820 Predicted AAA-ATPase HMY34_13110 PF03116 NQR2, RnfD, RnfE family HMY34_13115 PF04205 FMN-binding domain HMY34_13120 PF02508 Rnf-Nqr subunit, membrane protein HMY34_13125 PF03658 RnfH family Ubiquitin HMY34_13135 PF10431 C-terminal, D2-small domain, of ClpB protein HMY34_13135 PF07724 AAA domain (Cdc48 subfamily) HMY34_13135 PF06689 ClpX C4-type zinc finger HMY34_13140 PF00639 PPIC-type PPIASE domain HMY34_13145 PF04319 NifZ domain HMY34_13150 PF03206 Nitrogen fixation protein NifW HMY34_13160 PF10431 C-terminal, D2-small domain, of ClpB protein HMY34_13160 PF07724 AAA domain (Cdc48 subfamily) HMY34_13160 PF06689 ClpX C4-type zinc finger HMY34_13175 PF03543 Yersinia/Haemophilus virulence surface antigen HMY34_13175 PF05860 haemagglutination activity domain HMY34_13175 PF13332 Hemagglutinin repeat HMY34_13175 PF02661 Fic/DOC family HMY34_13175 PF13018 Extended Signal Peptide of Type V secretion system HMY34_13205 PF00132 Bacterial transferase hexapeptide (six repeats) HMY34_13210 PF00682 HMGL-like HMY34_13215 PF01266 FAD dependent oxidoreductase HMY34_13230 PF00462 Glutaredoxin HMY34_13240 PF00148 Nitrogenase component 1 type Oxidoreductase HMY34_13245 PF00148 Nitrogenase component 1 type Oxidoreductase HMY34_13265 PF01420 Type I restriction modification DNA specificity domain HMY34_13270 PF06250 YhcG PDDEXK nuclease domain HMY34_13270 PF17761 DUF1016 N-terminal domain HMY34_13275 PF02384 N-6 DNA Methylase HMY34_13280 PF08463 EcoEI R protein C-terminal HMY34_13280 PF00271 Helicase conserved C-terminal domain HMY34_13280 PF04851 Type III restriction enzyme, res subunit HMY34_13280 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HMY34_13285 PF02579 Dinitrogenase iron-molybdenum cofactor HMY34_13295 PF03270 Protein of unknown function, DUF269 HMY34_13305 PF13237 4Fe-4S dicluster domain HMY34_13310 PF00258 Flavodoxin HMY34_13350 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal HMY34_13350 PF02579 Dinitrogenase iron-molybdenum cofactor HMY34_13355 PF00037 4Fe-4S binding domain HMY34_13365 PF00148 Nitrogenase component 1 type Oxidoreductase HMY34_13365 PF11844 Domain of unknown function (DUF3364) HMY34_13370 PF00148 Nitrogenase component 1 type Oxidoreductase HMY34_13375 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family HMY34_13380 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) HMY34_13385 PF01227 GTP cyclohydrolase I HMY34_13395 PF03144 Elongation factor Tu domain 2 HMY34_13395 PF00679 Elongation factor G C-terminus HMY34_13395 PF00009 Elongation factor Tu GTP binding domain HMY34_13425 PF00691 OmpA family HMY34_13425 PF04972 BON domain HMY34_13445 PF01152 Bacterial-like globin HMY34_13470 PF01725 Ham1 family HMY34_13475 PF01138 3' exoribonuclease family, domain 1 HMY34_13475 PF03725 3' exoribonuclease family, domain 2 HMY34_13480 PF00512 His Kinase A (phospho-acceptor) domain HMY34_13480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_13480 PF09308 LuxQ, periplasmic HMY34_13480 PF00072 Response regulator receiver domain HMY34_13500 PF00072 Response regulator receiver domain HMY34_13500 PF00486 Transcriptional regulatory protein, C terminal HMY34_13510 PF00085 Thioredoxin HMY34_13515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMY34_13515 PF07498 Rho termination factor, N-terminal domain HMY34_13515 PF07497 Rho termination factor, RNA-binding domain HMY34_13520 PF13167 GTP-binding GTPase N-terminal HMY34_13520 PF01926 50S ribosome-binding GTPase HMY34_13520 PF16360 GTP-binding GTPase Middle Region HMY34_13525 PF17209 Hfq protein HMY34_13535 PF01119 DNA mismatch repair protein, C-terminal domain HMY34_13535 PF08676 MutL C terminal dimerisation domain HMY34_13540 PF13180 PDZ domain HMY34_13545 PF08264 Anticodon-binding domain of tRNA HMY34_13545 PF00133 tRNA synthetases class I (I, L, M and V) HMY34_13545 PF06827 Zinc finger found in FPG and IleRS HMY34_13550 PF01252 Signal peptidase (SPase) II HMY34_13555 PF14698 Argininosuccinate lyase C-terminal HMY34_13555 PF00206 Lyase HMY34_13560 PF07694 5TMR of 5TMR-LYT HMY34_13560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_13560 PF06580 Histidine kinase HMY34_13565 PF04397 LytTr DNA-binding domain HMY34_13565 PF00072 Response regulator receiver domain HMY34_13580 PF00119 ATP synthase A chain HMY34_13585 PF00137 ATP synthase subunit C HMY34_13590 PF00430 ATP synthase B/B' CF(0) HMY34_13595 PF00213 ATP synthase delta (OSCP) subunit HMY34_13600 PF00306 ATP synthase alpha/beta chain, C terminal domain HMY34_13600 PF02874 ATP synthase alpha/beta family, beta-barrel domain HMY34_13600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMY34_13605 PF00231 ATP synthase HMY34_13610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HMY34_13610 PF02874 ATP synthase alpha/beta family, beta-barrel domain HMY34_13615 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HMY34_13615 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HMY34_13630 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HMY34_13630 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HMY34_13655 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HMY34_13655 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HMY34_13665 PF00145 C-5 cytosine-specific DNA methylase HMY34_13685 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HMY34_13685 PF17944 Arginine decarboxylase C-terminal helical extension HMY34_13685 PF17810 Arginine decarboxylase helical bundle domain HMY34_13695 PF05166 YcgL domain HMY34_13715 PF00350 Dynamin family HMY34_13735 PF01850 PIN domain HMY34_13740 PF01844 HNH endonuclease HMY34_13750 PF00293 NUDIX domain HMY34_13760 PF00132 Bacterial transferase hexapeptide (six repeats) HMY34_13765 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HMY34_13770 PF02277 Phosphoribosyltransferase HMY34_13775 PF02654 Cobalamin-5-phosphate synthase HMY34_13780 PF07685 CobB/CobQ-like glutamine amidotransferase domain HMY34_13780 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HMY34_13785 PF00155 Aminotransferase class I and II HMY34_13790 PF03186 CobD/Cbib protein HMY34_13790 PF17113 Regulatory signalling modulator protein AmpE HMY34_13795 PF00881 Nitroreductase family HMY34_13800 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HMY34_13800 PF07685 CobB/CobQ-like glutamine amidotransferase domain HMY34_13810 PF07715 TonB-dependent Receptor Plug Domain HMY34_13810 PF00593 TonB dependent receptor HMY34_13815 PF01223 DNA/RNA non-specific endonuclease HMY34_13825 PF13847 Methyltransferase domain HMY34_13840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HMY34_13840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HMY34_13845 PF12323 Helix-turn-helix domain HMY34_13845 PF07282 Putative transposase DNA-binding domain HMY34_13845 PF01385 Probable transposase HMY34_13855 PF01569 PAP2 superfamily HMY34_13865 PF01026 TatD related DNase HMY34_13870 PF09233 Restriction endonuclease EcoRV HMY34_13875 PF02086 D12 class N6 adenine-specific DNA methyltransferase HMY34_13890 PF00733 Asparagine synthase HMY34_13890 PF13537 Glutamine amidotransferase domain HMY34_13900 PF00005 ABC transporter HMY34_13910 PF12704 MacB-like periplasmic core domain HMY34_13910 PF02687 FtsX-like permease family HMY34_13920 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HMY34_13920 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HMY34_13925 PF02630 SCO1/SenC HMY34_13935 PF00115 Cytochrome C and Quinol oxidase polypeptide I HMY34_13940 PF01040 UbiA prenyltransferase family HMY34_13965 PF00510 Cytochrome c oxidase subunit III HMY34_13970 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 HMY34_13980 PF00115 Cytochrome C and Quinol oxidase polypeptide I HMY34_13985 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HMY34_13995 PF00578 AhpC/TSA family HMY34_14000 PF02628 Cytochrome oxidase assembly protein HMY34_14005 PF00202 Aminotransferase class-III HMY34_14010 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HMY34_14010 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HMY34_14015 PF03372 Endonuclease/Exonuclease/phosphatase family HMY34_14020 PF01734 Patatin-like phospholipase HMY34_14025 PF04264 YceI-like domain HMY34_14030 PF01292 Prokaryotic cytochrome b561 HMY34_14035 PF02678 Pirin HMY34_14035 PF17954 Quercetinase C-terminal cupin domain HMY34_14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_14040 PF03466 LysR substrate binding domain HMY34_14045 PF09335 SNARE associated Golgi protein HMY34_14050 PF02562 PhoH-like protein HMY34_14050 PF13638 PIN domain HMY34_14055 PF00578 AhpC/TSA family HMY34_14060 PF00701 Dihydrodipicolinate synthetase family HMY34_14065 PF06804 NlpB/DapX lipoprotein HMY34_14070 PF12706 Beta-lactamase superfamily domain HMY34_14070 PF00753 Metallo-beta-lactamase superfamily HMY34_14155 PF03739 Lipopolysaccharide export system permease LptF/LptG HMY34_14160 PF01569 PAP2 superfamily HMY34_14170 PF00535 Glycosyl transferase family 2 HMY34_14180 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase HMY34_14185 PF01569 PAP2 superfamily HMY34_14195 PF06969 HemN C-terminal domain HMY34_14195 PF04055 Radical SAM superfamily HMY34_14205 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HMY34_14205 PF17191 RecG wedge domain HMY34_14205 PF00270 DEAD/DEAH box helicase HMY34_14210 PF01420 Type I restriction modification DNA specificity domain HMY34_14220 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HMY34_14225 PF00270 DEAD/DEAH box helicase HMY34_14225 PF00271 Helicase conserved C-terminal domain HMY34_14225 PF16124 RecQ zinc-binding HMY34_14225 PF09382 RQC domain HMY34_14225 PF00570 HRDC domain HMY34_14245 PF00398 Ribosomal RNA adenine dimethylase HMY34_14250 PF04972 BON domain HMY34_14250 PF00691 OmpA family HMY34_14260 PF00691 OmpA family HMY34_14260 PF05736 OprF membrane domain HMY34_14265 PF03109 ABC1 family HMY34_14270 PF13173 AAA domain HMY34_14270 PF13635 Domain of unknown function (DUF4143) HMY34_14275 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HMY34_14280 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HMY34_14285 PF00313 'Cold-shock' DNA-binding domain HMY34_14325 PF00484 Carbonic anhydrase HMY34_14335 PF00174 Oxidoreductase molybdopterin binding domain HMY34_14340 PF01794 Ferric reductase like transmembrane component HMY34_14345 PF01966 HD domain HMY34_14345 PF00072 Response regulator receiver domain HMY34_14365 PF08406 CbbQ/NirQ/NorQ C-terminal HMY34_14365 PF07728 AAA domain (dynein-related subfamily) HMY34_14380 PF13635 Domain of unknown function (DUF4143) HMY34_14380 PF13173 AAA domain HMY34_14385 PF00535 Glycosyl transferase family 2 HMY34_14395 PF04349 Periplasmic glucan biosynthesis protein, MdoG HMY34_14405 PF01209 ubiE/COQ5 methyltransferase family HMY34_14415 PF06750 Bacterial Peptidase A24 N-terminal domain HMY34_14415 PF01478 Type IV leader peptidase family HMY34_14420 PF00482 Type II secretion system (T2SS), protein F HMY34_14425 PF00437 Type II/IV secretion system protein HMY34_14425 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HMY34_14430 PF09820 Predicted AAA-ATPase HMY34_14430 PF08011 PD-(D/E)XK nuclease superfamily HMY34_14455 PF07963 Prokaryotic N-terminal methylation motif HMY34_14455 PF00114 Pilin (bacterial filament) HMY34_14460 PF07963 Prokaryotic N-terminal methylation motif HMY34_14460 PF00114 Pilin (bacterial filament) HMY34_14475 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HMY34_14485 PF05685 Putative restriction endonuclease HMY34_14490 PF02954 Bacterial regulatory protein, Fis family HMY34_14490 PF00072 Response regulator receiver domain HMY34_14490 PF00158 Sigma-54 interaction domain HMY34_14495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_14495 PF00512 His Kinase A (phospho-acceptor) domain HMY34_14500 PF00795 Carbon-nitrogen hydrolase HMY34_14500 PF02540 NAD synthase HMY34_14505 PF00543 Nitrogen regulatory protein P-II HMY34_14510 PF13718 GNAT acetyltransferase 2 HMY34_14510 PF17176 tRNA-binding domain HMY34_14510 PF05127 Helicase HMY34_14510 PF08351 Domain of unknown function (DUF1726) HMY34_14520 PF02673 Bacitracin resistance protein BacA HMY34_14540 PF00005 ABC transporter HMY34_14540 PF13732 Domain of unknown function (DUF4162) HMY34_14565 PF03880 DbpA RNA binding domain HMY34_14565 PF00270 DEAD/DEAH box helicase HMY34_14565 PF00271 Helicase conserved C-terminal domain HMY34_14580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HMY34_14590 PF00027 Cyclic nucleotide-binding domain HMY34_14590 PF13545 Crp-like helix-turn-helix domain HMY34_14600 PF00211 Adenylate and Guanylate cyclase catalytic domain HMY34_14625 PF13847 Methyltransferase domain HMY34_14625 PF10119 Predicted methyltransferase regulatory domain HMY34_14640 PF02706 Chain length determinant protein HMY34_14640 PF13614 AAA domain HMY34_14640 PF13807 G-rich domain on putative tyrosine kinase HMY34_14655 PF02719 Polysaccharide biosynthesis protein HMY34_14660 PF08548 Peptidase M10 serralysin C terminal HMY34_14660 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) HMY34_14660 PF00413 Matrixin HMY34_14685 PF00005 ABC transporter HMY34_14695 PF00529 HlyD membrane-fusion protein of T1SS HMY34_14695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HMY34_14700 PF00664 ABC transporter transmembrane region HMY34_14700 PF00005 ABC transporter HMY34_14715 PF02397 Bacterial sugar transferase HMY34_14750 PF02397 Bacterial sugar transferase HMY34_14765 PF01370 NAD dependent epimerase/dehydratase family HMY34_14775 PF01370 NAD dependent epimerase/dehydratase family HMY34_14780 PF00535 Glycosyl transferase family 2 HMY34_14805 PF03102 NeuB family HMY34_14805 PF08666 SAF domain HMY34_14810 PF13302 Acetyltransferase (GNAT) domain HMY34_14820 PF02348 Cytidylyltransferase HMY34_14825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HMY34_14830 PF02719 Polysaccharide biosynthesis protein HMY34_14835 PF16363 GDP-mannose 4,6 dehydratase HMY34_14840 PF00483 Nucleotidyl transferase HMY34_14845 PF01370 NAD dependent epimerase/dehydratase family HMY34_14860 PF12323 Helix-turn-helix domain HMY34_14860 PF07282 Putative transposase DNA-binding domain HMY34_14860 PF01385 Probable transposase HMY34_14885 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_14890 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_14890 PF12911 N-terminal TM domain of oligopeptide transport permease C HMY34_14895 PF00005 ABC transporter HMY34_14895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMY34_14905 PF18075 FtsX extracellular domain HMY34_14910 PF00005 ABC transporter HMY34_14915 PF02881 SRP54-type protein, helical bundle domain HMY34_14915 PF00448 SRP54-type protein, GTPase domain HMY34_14920 PF00675 Insulinase (Peptidase family M16) HMY34_14920 PF05193 Peptidase M16 inactive domain HMY34_14925 PF05193 Peptidase M16 inactive domain HMY34_14925 PF00675 Insulinase (Peptidase family M16) HMY34_14935 PF00877 NlpC/P60 family HMY34_14960 PF00092 von Willebrand factor type A domain HMY34_14960 PF07584 Aerotolerance regulator N-terminal HMY34_14965 PF00092 von Willebrand factor type A domain HMY34_14975 PF01593 Flavin containing amine oxidoreductase HMY34_14990 PF17863 AAA lid domain HMY34_14990 PF07726 ATPase family associated with various cellular activities (AAA) HMY34_14995 PF07690 Major Facilitator Superfamily HMY34_15000 PF00581 Rhodanese-like domain HMY34_15005 PF00753 Metallo-beta-lactamase superfamily HMY34_15005 PF00581 Rhodanese-like domain HMY34_15040 PF00899 ThiF family HMY34_15075 PF02683 Cytochrome C biogenesis protein transmembrane region HMY34_15075 PF11412 Disulphide bond corrector protein DsbC HMY34_15110 PF00873 AcrB/AcrD/AcrF family HMY34_15115 PF13533 Biotin-lipoyl like HMY34_15120 PF08011 PD-(D/E)XK nuclease superfamily HMY34_15120 PF09820 Predicted AAA-ATPase HMY34_15130 PF01925 Sulfite exporter TauE/SafE HMY34_15135 PF01926 50S ribosome-binding GTPase HMY34_15135 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HMY34_15140 PF09297 NADH pyrophosphatase zinc ribbon domain HMY34_15140 PF00293 NUDIX domain HMY34_15150 PF00117 Glutamine amidotransferase class-I HMY34_15155 PF04715 Anthranilate synthase component I, N terminal region HMY34_15155 PF00425 chorismate binding enzyme HMY34_15160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_15160 PF03466 LysR substrate binding domain HMY34_15165 PF02597 ThiS family HMY34_15170 PF02391 MoaE protein HMY34_15175 PF13396 Phospholipase_D-nuclease N-terminal HMY34_15175 PF13091 PLD-like domain HMY34_15180 PF00830 Ribosomal L28 family HMY34_15185 PF00471 Ribosomal protein L33 HMY34_15200 PF02152 Dihydroneopterin aldolase HMY34_15220 PF00041 Fibronectin type III domain HMY34_15220 PF00704 Glycosyl hydrolases family 18 HMY34_15225 PF07687 Peptidase dimerisation domain HMY34_15225 PF01546 Peptidase family M20/M25/M40 HMY34_15235 PF13406 Transglycosylase SLT domain HMY34_15240 PF01544 CorA-like Mg2+ transporter protein HMY34_15245 PF03668 P-loop ATPase protein family HMY34_15250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HMY34_15255 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HMY34_15260 PF04963 Sigma-54 factor, core binding domain HMY34_15260 PF04552 Sigma-54, DNA binding domain HMY34_15260 PF00309 Sigma-54 factor, Activator interacting domain (AID) HMY34_15265 PF12399 Branched-chain amino acid ATP-binding cassette transporter HMY34_15265 PF00005 ABC transporter HMY34_15285 PF01380 SIS domain HMY34_15285 PF00571 CBS domain HMY34_15295 PF02547 Queuosine biosynthesis protein HMY34_15305 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HMY34_15305 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HMY34_15310 PF03618 Kinase/pyrophosphorylase HMY34_15315 PF00391 PEP-utilising enzyme, mobile domain HMY34_15315 PF02896 PEP-utilising enzyme, TIM barrel domain HMY34_15315 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HMY34_15320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_15320 PF03466 LysR substrate binding domain HMY34_15325 PF13439 Glycosyltransferase Family 4 HMY34_15325 PF00534 Glycosyl transferases group 1 HMY34_15330 PF06969 HemN C-terminal domain HMY34_15330 PF04055 Radical SAM superfamily HMY34_15335 PF00027 Cyclic nucleotide-binding domain HMY34_15335 PF13545 Crp-like helix-turn-helix domain HMY34_15340 PF01066 CDP-alcohol phosphatidyltransferase HMY34_15345 PF00682 HMGL-like HMY34_15345 PF08502 LeuA allosteric (dimerisation) domain HMY34_15350 PF03167 Uracil DNA glycosylase superfamily HMY34_15360 PF12627 Probable RNA and SrmB- binding site of polymerase A HMY34_15360 PF01743 Poly A polymerase head domain HMY34_15360 PF12626 Polymerase A arginine-rich C-terminus HMY34_15365 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HMY34_15370 PF00873 AcrB/AcrD/AcrF family HMY34_15380 PF08359 YsiA-like protein, C-terminal region HMY34_15380 PF00440 Bacterial regulatory proteins, tetR family HMY34_15410 PF02272 DHHA1 domain HMY34_15410 PF01411 tRNA synthetases class II (A) HMY34_15410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HMY34_15415 PF01844 HNH endonuclease HMY34_15420 PF00155 Aminotransferase class I and II HMY34_15425 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HMY34_15425 PF00132 Bacterial transferase hexapeptide (six repeats) HMY34_15425 PF14602 Hexapeptide repeat of succinyl-transferase HMY34_15435 PF01464 Transglycosylase SLT domain HMY34_15440 PF02503 Polyphosphate kinase middle domain HMY34_15440 PF13090 Polyphosphate kinase C-terminal domain 2 HMY34_15440 PF17941 Polyphosphate kinase C-terminal domain 1 HMY34_15440 PF13089 Polyphosphate kinase N-terminal domain HMY34_15445 PF01618 MotA/TolQ/ExbB proton channel family HMY34_15450 PF02472 Biopolymer transport protein ExbD/TolR HMY34_15455 PF00005 ABC transporter HMY34_15455 PF00664 ABC transporter transmembrane region HMY34_15460 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HMY34_15465 PF03966 Trm112p-like protein HMY34_15470 PF02348 Cytidylyltransferase HMY34_15490 PF06039 Malate:quinone oxidoreductase (Mqo) HMY34_15495 PF00463 Isocitrate lyase family HMY34_15500 PF03737 Aldolase/RraA HMY34_15515 PF03480 Bacterial extracellular solute-binding protein, family 7 HMY34_15520 PF00764 Arginosuccinate synthase HMY34_15525 PF04102 SlyX HMY34_15530 PF04445 Putative SAM-dependent methyltransferase HMY34_15535 PF04241 Protein of unknown function (DUF423) HMY34_15540 PF00149 Calcineurin-like phosphoesterase HMY34_15545 PF02082 Transcriptional regulator HMY34_15555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HMY34_15555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HMY34_15555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HMY34_15555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HMY34_15560 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HMY34_15560 PF13542 Helix-turn-helix domain of transposase family ISL3 HMY34_15560 PF01610 Transposase HMY34_15570 PF00586 AIR synthase related protein, N-terminal domain HMY34_15570 PF02769 AIR synthase related protein, C-terminal domain HMY34_15575 PF02397 Bacterial sugar transferase HMY34_15580 PF00482 Type II secretion system (T2SS), protein F HMY34_15585 PF00437 Type II/IV secretion system protein HMY34_15590 PF00263 Bacterial type II and III secretion system protein HMY34_15590 PF03958 Bacterial type II/III secretion system short domain HMY34_15610 PF10502 Signal peptidase, peptidase S26 HMY34_15615 PF00270 DEAD/DEAH box helicase HMY34_15615 PF18019 HD domain HMY34_15615 PF00271 Helicase conserved C-terminal domain HMY34_15620 PF01850 PIN domain HMY34_15625 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HMY34_15630 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) HMY34_15640 PF09344 CT1975-like protein HMY34_15645 PF09704 CRISPR-associated protein (Cas_Cas5) HMY34_15655 PF01867 CRISPR associated protein Cas1 HMY34_15660 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) HMY34_15680 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HMY34_15680 PF01266 FAD dependent oxidoreductase HMY34_15690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HMY34_15700 PF13356 Arm DNA-binding domain HMY34_15700 PF00589 Phage integrase family HMY34_15720 PF00561 alpha/beta hydrolase fold HMY34_15745 PF00155 Aminotransferase class I and II HMY34_15750 PF01784 NIF3 (NGG1p interacting factor 3) HMY34_15755 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HMY34_15755 PF00355 Rieske [2Fe-2S] domain HMY34_15760 PF00032 Cytochrome b(C-terminal)/b6/petD HMY34_15760 PF00033 Cytochrome b/b6/petB HMY34_15765 PF02167 Cytochrome C1 family HMY34_15770 PF00043 Glutathione S-transferase, C-terminal domain HMY34_15770 PF02798 Glutathione S-transferase, N-terminal domain HMY34_15775 PF04386 Stringent starvation protein B HMY34_15780 PF00186 Dihydrofolate reductase HMY34_15785 PF01979 Amidohydrolase family HMY34_15790 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_15815 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor HMY34_15815 PF07963 Prokaryotic N-terminal methylation motif HMY34_15825 PF13847 Methyltransferase domain HMY34_15825 PF17827 PrmC N-terminal domain HMY34_15830 PF00472 RF-1 domain HMY34_15830 PF03462 PCRF domain HMY34_15835 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HMY34_15835 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HMY34_15835 PF01488 Shikimate / quinate 5-dehydrogenase HMY34_15845 PF03550 Outer membrane lipoprotein LolB HMY34_15850 PF00288 GHMP kinases N terminal domain HMY34_15850 PF08544 GHMP kinases C terminal HMY34_15860 PF14572 Phosphoribosyl synthetase-associated domain HMY34_15860 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HMY34_15865 PF01386 Ribosomal L25p family HMY34_15865 PF14693 Ribosomal protein TL5, C-terminal domain HMY34_15870 PF01195 Peptidyl-tRNA hydrolase HMY34_15875 PF01926 50S ribosome-binding GTPase HMY34_15875 PF06071 Protein of unknown function (DUF933) HMY34_15885 PF07690 Major Facilitator Superfamily HMY34_15910 PF13173 AAA domain HMY34_15910 PF13635 Domain of unknown function (DUF4143) HMY34_15915 PF00270 DEAD/DEAH box helicase HMY34_15915 PF17191 RecG wedge domain HMY34_15915 PF00271 Helicase conserved C-terminal domain HMY34_15920 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HMY34_15925 PF03971 Monomeric isocitrate dehydrogenase HMY34_15935 PF01061 ABC-2 type transporter HMY34_15940 PF00005 ABC transporter HMY34_15945 PF00912 Transglycosylase HMY34_15955 PF13173 AAA domain HMY34_15955 PF13635 Domain of unknown function (DUF4143) HMY34_15960 PF00994 Probable molybdopterin binding domain HMY34_15960 PF03454 MoeA C-terminal region (domain IV) HMY34_15960 PF03453 MoeA N-terminal region (domain I and II) HMY34_15965 PF01842 ACT domain HMY34_15965 PF01909 Nucleotidyltransferase domain HMY34_15965 PF01966 HD domain HMY34_15965 PF08335 GlnD PII-uridylyltransferase HMY34_15970 PF00557 Metallopeptidase family M24 HMY34_15975 PF00318 Ribosomal protein S2 HMY34_15980 PF00889 Elongation factor TS HMY34_15985 PF00696 Amino acid kinase family HMY34_15990 PF01765 Ribosome recycling factor HMY34_15995 PF01255 Putative undecaprenyl diphosphate synthase HMY34_16010 PF02163 Peptidase family M50 HMY34_16010 PF17820 PDZ domain HMY34_16015 PF01103 Surface antigen HMY34_16015 PF07244 Surface antigen variable number repeat HMY34_16025 PF00132 Bacterial transferase hexapeptide (six repeats) HMY34_16025 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HMY34_16030 PF07977 FabA-like domain HMY34_16035 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HMY34_16035 PF00132 Bacterial transferase hexapeptide (six repeats) HMY34_16040 PF02684 Lipid-A-disaccharide synthetase HMY34_16050 PF01351 Ribonuclease HII HMY34_16065 PF14579 Helix-hairpin-helix motif HMY34_16065 PF07733 Bacterial DNA polymerase III alpha NTPase domain HMY34_16065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HMY34_16065 PF01336 OB-fold nucleic acid binding domain HMY34_16065 PF02811 PHP domain HMY34_16070 PF13614 AAA domain HMY34_16075 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HMY34_16075 PF00117 Glutamine amidotransferase class-I HMY34_16080 PF02142 MGS-like domain HMY34_16080 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HMY34_16080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HMY34_16085 PF03449 Transcription elongation factor, N-terminal HMY34_16085 PF01272 Transcription elongation factor, GreA/GreB, C-term HMY34_16090 PF00300 Histidine phosphatase superfamily (branch 1) HMY34_16095 PF02654 Cobalamin-5-phosphate synthase HMY34_16110 PF00462 Glutaredoxin HMY34_16120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_16120 PF00072 Response regulator receiver domain HMY34_16120 PF01627 Hpt domain HMY34_16120 PF00512 His Kinase A (phospho-acceptor) domain HMY34_16120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_16120 PF00672 HAMP domain HMY34_16130 PF00085 Thioredoxin HMY34_16135 PF04608 Phosphatidylglycerophosphatase A HMY34_16140 PF00749 tRNA synthetases class I (E and Q), catalytic domain HMY34_16145 PF00571 CBS domain HMY34_16145 PF00478 IMP dehydrogenase / GMP reductase domain HMY34_16170 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HMY34_16170 PF00207 Alpha-2-macroglobulin family HMY34_16170 PF07703 Alpha-2-macroglobulin bait region domain HMY34_16170 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain HMY34_16170 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HMY34_16170 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HMY34_16170 PF17962 Bacterial macroglobulin domain 6 HMY34_16170 PF01835 MG2 domain HMY34_16175 PF00905 Penicillin binding protein transpeptidase domain HMY34_16175 PF00912 Transglycosylase HMY34_16175 PF06832 Penicillin-Binding Protein C-terminus Family HMY34_16180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_16185 PF00486 Transcriptional regulatory protein, C terminal HMY34_16185 PF00072 Response regulator receiver domain HMY34_16195 PF08007 Cupin superfamily protein HMY34_16200 PF08328 Adenylosuccinate lyase C-terminal HMY34_16200 PF00206 Lyase HMY34_16205 PF02910 Fumarate reductase flavoprotein C-term HMY34_16205 PF00890 FAD binding domain HMY34_16210 PF08281 Sigma-70, region 4 HMY34_16210 PF04542 Sigma-70 region 2 HMY34_16230 PF13180 PDZ domain HMY34_16240 PF00679 Elongation factor G C-terminus HMY34_16240 PF00009 Elongation factor Tu GTP binding domain HMY34_16240 PF03144 Elongation factor Tu domain 2 HMY34_16240 PF06421 GTP-binding protein LepA C-terminus HMY34_16245 PF10502 Signal peptidase, peptidase S26 HMY34_16255 PF14622 Ribonuclease-III-like HMY34_16255 PF00035 Double-stranded RNA binding motif HMY34_16260 PF01926 50S ribosome-binding GTPase HMY34_16260 PF07650 KH domain HMY34_16265 PF11967 Recombination protein O N terminal HMY34_16265 PF02565 Recombination protein O C terminal HMY34_16270 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HMY34_16285 PF01648 4'-phosphopantetheinyl transferase superfamily HMY34_16295 PF00072 Response regulator receiver domain HMY34_16295 PF01627 Hpt domain HMY34_16295 PF00512 His Kinase A (phospho-acceptor) domain HMY34_16295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_16300 PF00291 Pyridoxal-phosphate dependent enzyme HMY34_16320 PF02661 Fic/DOC family HMY34_16340 PF00069 Protein kinase domain HMY34_16340 PF00400 WD domain, G-beta repeat HMY34_16355 PF00145 C-5 cytosine-specific DNA methylase HMY34_16355 PF01381 Helix-turn-helix HMY34_16385 PF12419 SNF2 Helicase protein HMY34_16385 PF00271 Helicase conserved C-terminal domain HMY34_16385 PF00176 SNF2 family N-terminal domain HMY34_16395 PF05958 tRNA (Uracil-5-)-methyltransferase HMY34_16400 PF12826 Helix-hairpin-helix motif HMY34_16400 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HMY34_16400 PF03120 NAD-dependent DNA ligase OB-fold domain HMY34_16400 PF01653 NAD-dependent DNA ligase adenylation domain HMY34_16400 PF00533 BRCA1 C Terminus (BRCT) domain HMY34_16435 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain HMY34_16435 PF13538 UvrD-like helicase C-terminal domain HMY34_16435 PF14490 Helix-hairpin-helix containing domain HMY34_16450 PF08406 CbbQ/NirQ/NorQ C-terminal HMY34_16450 PF07728 AAA domain (dynein-related subfamily) HMY34_16460 PF00101 Ribulose bisphosphate carboxylase, small chain HMY34_16465 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain HMY34_16465 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain HMY34_16470 PF03466 LysR substrate binding domain HMY34_16470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_16480 PF03989 DNA gyrase C-terminal domain, beta-propeller HMY34_16480 PF00521 DNA gyrase/topoisomerase IV, subunit A HMY34_16500 PF00266 Aminotransferase class-V HMY34_16505 PF00800 Prephenate dehydratase HMY34_16505 PF01817 Chorismate mutase type II HMY34_16505 PF01842 ACT domain HMY34_16510 PF00958 GMP synthase C terminal domain HMY34_16510 PF00117 Glutamine amidotransferase class-I HMY34_16510 PF02540 NAD synthase HMY34_16520 PF13649 Methyltransferase domain HMY34_16525 PF08003 Protein of unknown function (DUF1698) HMY34_16545 PF01979 Amidohydrolase family HMY34_16550 PF01008 Initiation factor 2 subunit family HMY34_16560 PF02899 Phage integrase, N-terminal SAM-like domain HMY34_16560 PF00589 Phage integrase family HMY34_16565 PF10411 Disulfide bond isomerase protein N-terminus HMY34_16565 PF13098 Thioredoxin-like domain HMY34_16570 PF01624 MutS domain I HMY34_16570 PF05192 MutS domain III HMY34_16570 PF05190 MutS family domain IV HMY34_16570 PF00488 MutS domain V HMY34_16570 PF05188 MutS domain II HMY34_16585 PF08011 PD-(D/E)XK nuclease superfamily HMY34_16585 PF09820 Predicted AAA-ATPase HMY34_16600 PF00664 ABC transporter transmembrane region HMY34_16600 PF00005 ABC transporter HMY34_16610 PF00999 Sodium/hydrogen exchanger family HMY34_16610 PF02080 TrkA-C domain HMY34_16610 PF02254 TrkA-N domain HMY34_16615 PF02954 Bacterial regulatory protein, Fis family HMY34_16625 PF03150 Di-haem cytochrome c peroxidase HMY34_16630 PF00156 Phosphoribosyl transferase domain HMY34_16635 PF02666 Phosphatidylserine decarboxylase HMY34_16645 PF00815 Histidinol dehydrogenase HMY34_16650 PF00793 DAHP synthetase I family HMY34_16655 PF01634 ATP phosphoribosyltransferase HMY34_16660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HMY34_16675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HMY34_16675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HMY34_16675 PF00205 Thiamine pyrophosphate enzyme, central domain HMY34_16680 PF02463 RecF/RecN/SMC N terminal domain HMY34_16695 PF00795 Carbon-nitrogen hydrolase HMY34_16695 PF00583 Acetyltransferase (GNAT) family HMY34_16700 PF00472 RF-1 domain HMY34_16710 PF01555 DNA methylase HMY34_16750 PF03129 Anticodon binding domain HMY34_16750 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HMY34_16750 PF04073 Aminoacyl-tRNA editing domain HMY34_16755 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_16760 PF01654 Cytochrome bd terminal oxidase subunit I HMY34_16765 PF02322 Cytochrome bd terminal oxidase subunit II HMY34_16770 PF08173 Membrane bound YbgT-like protein HMY34_16775 PF00664 ABC transporter transmembrane region HMY34_16775 PF00005 ABC transporter HMY34_16780 PF00005 ABC transporter HMY34_16780 PF00664 ABC transporter transmembrane region HMY34_16785 PF01263 Aldose 1-epimerase HMY34_16790 PF00875 DNA photolyase HMY34_16790 PF03441 FAD binding domain of DNA photolyase HMY34_16795 PF13411 MerR HTH family regulatory protein HMY34_16805 PF01476 LysM domain HMY34_16810 PF00877 NlpC/P60 family HMY34_16835 PF05816 Toxic anion resistance protein (TelA) HMY34_16845 PF01551 Peptidase family M23 HMY34_16845 PF08525 Opacity-associated protein A N-terminal motif HMY34_16845 PF01476 LysM domain HMY34_16850 PF00155 Aminotransferase class I and II HMY34_16855 PF04228 Putative neutral zinc metallopeptidase HMY34_16880 PF04539 Sigma-70 region 3 HMY34_16880 PF04545 Sigma-70, region 4 HMY34_16880 PF04542 Sigma-70 region 2 HMY34_16880 PF00140 Sigma-70 factor, region 1.2 HMY34_16890 PF00155 Aminotransferase class I and II HMY34_16895 PF00742 Homoserine dehydrogenase HMY34_16895 PF01842 ACT domain HMY34_16895 PF03447 Homoserine dehydrogenase, NAD binding domain HMY34_16900 PF00291 Pyridoxal-phosphate dependent enzyme HMY34_16900 PF14821 Threonine synthase N terminus HMY34_16910 PF01522 Polysaccharide deacetylase HMY34_16915 PF00534 Glycosyl transferases group 1 HMY34_16925 PF02706 Chain length determinant protein HMY34_16925 PF13807 G-rich domain on putative tyrosine kinase HMY34_16925 PF13614 AAA domain HMY34_16930 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HMY34_16930 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_16935 PF04898 Glutamate synthase central domain HMY34_16935 PF01493 GXGXG motif HMY34_16935 PF00310 Glutamine amidotransferases class-II HMY34_16935 PF01645 Conserved region in glutamate synthase HMY34_16940 PF10410 DnaB-helicase binding domain of primase HMY34_16940 PF01807 CHC2 zinc finger HMY34_16940 PF08275 DNA primase catalytic core, N-terminal domain HMY34_16940 PF08278 DNA primase DnaG DnaB-binding HMY34_16945 PF03979 Sigma-70 factor, region 1.1 HMY34_16945 PF00140 Sigma-70 factor, region 1.2 HMY34_16945 PF04542 Sigma-70 region 2 HMY34_16945 PF04539 Sigma-70 region 3 HMY34_16945 PF04545 Sigma-70, region 4 HMY34_16945 PF04546 Sigma-70, non-essential region HMY34_17015 PF00072 Response regulator receiver domain HMY34_17015 PF00196 Bacterial regulatory proteins, luxR family HMY34_17020 PF00672 HAMP domain HMY34_17020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_17020 PF07730 Histidine kinase HMY34_17020 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HMY34_17045 PF07690 Major Facilitator Superfamily HMY34_17050 PF07690 Major Facilitator Superfamily HMY34_17055 PF04358 DsrC like protein HMY34_17060 PF14710 Respiratory nitrate reductase alpha N-terminal HMY34_17060 PF01568 Molydopterin dinucleotide binding domain HMY34_17060 PF00384 Molybdopterin oxidoreductase HMY34_17065 PF14711 Respiratory nitrate reductase beta C-terminal HMY34_17065 PF13247 4Fe-4S dicluster domain HMY34_17070 PF02613 Nitrate reductase delta subunit HMY34_17075 PF02665 Nitrate reductase gamma subunit HMY34_17080 PF09312 SurA N-terminal domain HMY34_17080 PF00639 PPIC-type PPIASE domain HMY34_17085 PF04055 Radical SAM superfamily HMY34_17085 PF06463 Molybdenum Cofactor Synthesis C HMY34_17100 PF00873 AcrB/AcrD/AcrF family HMY34_17115 PF09828 Chromate resistance exported protein HMY34_17125 PF01152 Bacterial-like globin HMY34_17130 PF03595 Voltage-dependent anion channel HMY34_17135 PF04358 DsrC like protein HMY34_17140 PF03466 LysR substrate binding domain HMY34_17140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_17145 PF02687 FtsX-like permease family HMY34_17145 PF00005 ABC transporter HMY34_17145 PF12704 MacB-like periplasmic core domain HMY34_17160 PF00440 Bacterial regulatory proteins, tetR family HMY34_17170 PF02661 Fic/DOC family HMY34_17185 PF01336 OB-fold nucleic acid binding domain HMY34_17185 PF00152 tRNA synthetases class II (D, K and N) HMY34_17190 PF13419 Haloacid dehalogenase-like hydrolase HMY34_17195 PF00834 Ribulose-phosphate 3 epimerase family HMY34_17215 PF13525 Outer membrane lipoprotein HMY34_17220 PF01479 S4 domain HMY34_17220 PF00849 RNA pseudouridylate synthase HMY34_17225 PF02578 Multi-copper polyphenol oxidoreductase laccase HMY34_17230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HMY34_17230 PF00005 ABC transporter HMY34_17240 PF16363 GDP-mannose 4,6 dehydratase HMY34_17245 PF10531 SLBB domain HMY34_17245 PF02563 Polysaccharide biosynthesis/export protein HMY34_17250 PF10396 GTP-binding protein TrmE N-terminus HMY34_17250 PF12631 MnmE helical domain HMY34_17250 PF01926 50S ribosome-binding GTPase HMY34_17260 PF00005 ABC transporter HMY34_17260 PF08402 TOBE domain HMY34_17265 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_17270 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_17275 PF13416 Bacterial extracellular solute-binding protein HMY34_17280 PF00929 Exonuclease HMY34_17290 PF17831 Pyruvate dehydrogenase E1 component middle domain HMY34_17290 PF00456 Transketolase, thiamine diphosphate binding domain HMY34_17295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HMY34_17295 PF00364 Biotin-requiring enzyme HMY34_17295 PF02817 e3 binding domain HMY34_17300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HMY34_17300 PF00364 Biotin-requiring enzyme HMY34_17300 PF02817 e3 binding domain HMY34_17305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HMY34_17305 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_17315 PF01850 PIN domain HMY34_17385 PF13495 Phage integrase, N-terminal SAM-like domain HMY34_17385 PF00589 Phage integrase family HMY34_17390 PF10609 NUBPL iron-transfer P-loop NTPase HMY34_17395 PF03989 DNA gyrase C-terminal domain, beta-propeller HMY34_17395 PF00521 DNA gyrase/topoisomerase IV, subunit A HMY34_17400 PF01435 Peptidase family M48 HMY34_17405 PF01180 Dihydroorotate dehydrogenase HMY34_17415 PF00156 Phosphoribosyl transferase domain HMY34_17420 PF01048 Phosphorylase superfamily HMY34_17430 PF01555 DNA methylase HMY34_17450 PF12705 PD-(D/E)XK nuclease superfamily HMY34_17450 PF13361 UvrD-like helicase C-terminal domain HMY34_17450 PF00580 UvrD/REP helicase N-terminal domain HMY34_17455 PF01925 Sulfite exporter TauE/SafE HMY34_17465 PF00459 Inositol monophosphatase family HMY34_17485 PF10576 Iron-sulfur binding domain of endonuclease III HMY34_17485 PF00633 Helix-hairpin-helix motif HMY34_17485 PF00730 HhH-GPD superfamily base excision DNA repair protein HMY34_17490 PF02508 Rnf-Nqr subunit, membrane protein HMY34_17495 PF04205 FMN-binding domain HMY34_17500 PF03116 NQR2, RnfD, RnfE family HMY34_17505 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HMY34_17505 PF13375 RnfC Barrel sandwich hybrid domain HMY34_17505 PF12838 4Fe-4S dicluster domain HMY34_17505 PF10531 SLBB domain HMY34_17510 PF04060 Putative Fe-S cluster HMY34_17515 PF02508 Rnf-Nqr subunit, membrane protein HMY34_17520 PF00171 Aldehyde dehydrogenase family HMY34_17545 PF01467 Cytidylyltransferase-like HMY34_17555 PF02590 Predicted SPOUT methyltransferase HMY34_17560 PF02545 Maf-like protein HMY34_17565 PF10150 Ribonuclease E/G family HMY34_17565 PF00575 S1 RNA binding domain HMY34_17575 PF00795 Carbon-nitrogen hydrolase HMY34_17580 PF01523 Putative modulator of DNA gyrase HMY34_17585 PF01523 Putative modulator of DNA gyrase HMY34_17590 PF06865 Pyrimidine/purine nucleoside phosphorylase HMY34_17595 PF00551 Formyl transferase HMY34_17600 PF00586 AIR synthase related protein, N-terminal domain HMY34_17600 PF02769 AIR synthase related protein, C-terminal domain HMY34_17610 PF02403 Seryl-tRNA synthetase N-terminal domain HMY34_17610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HMY34_17615 PF12801 4Fe-4S binding domain HMY34_17615 PF13746 4Fe-4S dicluster domain HMY34_17615 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HMY34_17625 PF00403 Heavy-metal-associated domain HMY34_17630 PF03597 Cytochrome oxidase maturation protein cbb3-type HMY34_17635 PF03466 LysR substrate binding domain HMY34_17635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HMY34_17645 PF02151 UvrB/uvrC motif HMY34_17645 PF12344 Ultra-violet resistance protein B HMY34_17645 PF17757 UvrB interaction domain HMY34_17645 PF00271 Helicase conserved C-terminal domain HMY34_17645 PF04851 Type III restriction enzyme, res subunit HMY34_17655 PF08240 Alcohol dehydrogenase GroES-like domain HMY34_17655 PF00107 Zinc-binding dehydrogenase HMY34_17660 PF00756 Putative esterase HMY34_17670 PF01242 6-pyruvoyl tetrahydropterin synthase HMY34_17705 PF03848 Tellurite resistance protein TehB HMY34_17725 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HMY34_17730 PF14489 QueF-like protein HMY34_17735 PF02463 RecF/RecN/SMC N terminal domain HMY34_17740 PF04354 ZipA, C-terminal FtsZ-binding domain HMY34_17785 PF13493 Domain of unknown function (DUF4118) HMY34_17785 PF13492 GAF domain HMY34_17785 PF00512 His Kinase A (phospho-acceptor) domain HMY34_17785 PF02702 Osmosensitive K+ channel His kinase sensor domain HMY34_17785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_17790 PF00486 Transcriptional regulatory protein, C terminal HMY34_17790 PF00072 Response regulator receiver domain HMY34_17795 PF02705 K+ potassium transporter HMY34_17800 PF15887 Putative zinc-binding metallo-peptidase HMY34_17800 PF10005 zinc-ribbon domain HMY34_17810 PF00149 Calcineurin-like phosphoesterase HMY34_17815 PF00672 HAMP domain HMY34_17815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_17815 PF00512 His Kinase A (phospho-acceptor) domain HMY34_17815 PF01627 Hpt domain HMY34_17815 PF00072 Response regulator receiver domain HMY34_17815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_17830 PF00183 Hsp90 protein HMY34_17840 PF00512 His Kinase A (phospho-acceptor) domain HMY34_17840 PF00989 PAS fold HMY34_17840 PF11808 Phosphate regulon sensor protein PhoR HMY34_17840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_17845 PF00072 Response regulator receiver domain HMY34_17845 PF00486 Transcriptional regulatory protein, C terminal HMY34_17850 PF01895 PhoU domain HMY34_17855 PF00005 ABC transporter HMY34_17860 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_17865 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_17880 PF01209 ubiE/COQ5 methyltransferase family HMY34_17890 PF12849 PBP superfamily domain HMY34_17895 PF00893 Small Multidrug Resistance protein HMY34_17920 PF03976 Polyphosphate kinase 2 (PPK2) HMY34_17930 PF02872 5'-nucleotidase, C-terminal domain HMY34_17930 PF00149 Calcineurin-like phosphoesterase HMY34_17955 PF09423 PhoD-like phosphatase HMY34_17955 PF16655 PhoD-like phosphatase, N-terminal domain HMY34_17965 PF02872 5'-nucleotidase, C-terminal domain HMY34_17965 PF00149 Calcineurin-like phosphoesterase HMY34_17975 PF13439 Glycosyltransferase Family 4 HMY34_17975 PF00534 Glycosyl transferases group 1 HMY34_17985 PF01569 PAP2 superfamily HMY34_17990 PF13579 Glycosyl transferase 4-like domain HMY34_17990 PF00534 Glycosyl transferases group 1 HMY34_17995 PF00072 Response regulator receiver domain HMY34_17995 PF00486 Transcriptional regulatory protein, C terminal HMY34_18005 PF11700 Vacuole effluxer Atg22 like HMY34_18020 PF00892 EamA-like transporter family HMY34_18030 PF02810 SEC-C motif HMY34_18030 PF03695 Uncharacterised protein family (UPF0149) HMY34_18040 PF01555 DNA methylase HMY34_18060 PF01219 Prokaryotic diacylglycerol kinase HMY34_18065 PF00115 Cytochrome C and Quinol oxidase polypeptide I HMY34_18080 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HMY34_18080 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HMY34_18085 PF01565 FAD binding domain HMY34_18085 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HMY34_18090 PF01627 Hpt domain HMY34_18090 PF00512 His Kinase A (phospho-acceptor) domain HMY34_18090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_18090 PF00672 HAMP domain HMY34_18090 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HMY34_18090 PF00072 Response regulator receiver domain HMY34_18100 PF02562 PhoH-like protein HMY34_18105 PF02130 Uncharacterized protein family UPF0054 HMY34_18110 PF00571 CBS domain HMY34_18110 PF03471 Transporter associated domain HMY34_18115 PF00795 Carbon-nitrogen hydrolase HMY34_18120 PF00497 Bacterial extracellular solute-binding proteins, family 3 HMY34_18125 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_18140 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_18145 PF00005 ABC transporter HMY34_18150 PF00293 NUDIX domain HMY34_18155 PF01610 Transposase HMY34_18155 PF13542 Helix-turn-helix domain of transposase family ISL3 HMY34_18155 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HMY34_18160 PF01903 CbiX HMY34_18175 PF05164 Cell division protein ZapA HMY34_18185 PF03695 Uncharacterised protein family (UPF0149) HMY34_18190 PF05195 Aminopeptidase P, N-terminal domain HMY34_18190 PF00557 Metallopeptidase family M24 HMY34_18210 PF01494 FAD binding domain HMY34_18220 PF01551 Peptidase family M23 HMY34_18220 PF10145 Phage-related minor tail protein HMY34_18220 PF01464 Transglycosylase SLT domain HMY34_18235 PF00202 Aminotransferase class-III HMY34_18255 PF03631 Virulence factor BrkB HMY34_18260 PF01966 HD domain HMY34_18260 PF13286 Phosphohydrolase-associated domain HMY34_18290 PF03793 PASTA domain HMY34_18290 PF00069 Protein kinase domain HMY34_18295 PF01250 Ribosomal protein S6 HMY34_18300 PF01084 Ribosomal protein S18 HMY34_18305 PF03948 Ribosomal protein L9, C-terminal domain HMY34_18305 PF01281 Ribosomal protein L9, N-terminal domain HMY34_18310 PF00772 DnaB-like helicase N terminal domain HMY34_18310 PF03796 DnaB-like helicase C terminal domain HMY34_18315 PF01168 Alanine racemase, N-terminal domain HMY34_18315 PF00842 Alanine racemase, C-terminal domain HMY34_18325 PF00512 His Kinase A (phospho-acceptor) domain HMY34_18325 PF00672 HAMP domain HMY34_18325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_18330 PF00072 Response regulator receiver domain HMY34_18330 PF00486 Transcriptional regulatory protein, C terminal HMY34_18350 PF05552 Conserved TM helix HMY34_18370 PF00005 ABC transporter HMY34_18370 PF17755 UvrA DNA-binding domain HMY34_18370 PF17760 UvrA interaction domain HMY34_18380 PF01850 PIN domain HMY34_18405 PF01145 SPFH domain / Band 7 family HMY34_18410 PF01145 SPFH domain / Band 7 family HMY34_18415 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_18420 PF03330 Lytic transglycolase HMY34_18420 PF05036 Sporulation related domain HMY34_18435 PF00749 tRNA synthetases class I (E and Q), catalytic domain HMY34_18435 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HMY34_18450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HMY34_18450 PF00384 Molybdopterin oxidoreductase HMY34_18450 PF01568 Molydopterin dinucleotide binding domain HMY34_18450 PF10518 TAT (twin-arginine translocation) pathway signal sequence HMY34_18455 PF13247 4Fe-4S dicluster domain HMY34_18470 PF00578 AhpC/TSA family HMY34_18475 PF00561 alpha/beta hydrolase fold HMY34_18490 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HMY34_18490 PF00355 Rieske [2Fe-2S] domain HMY34_18510 PF10518 TAT (twin-arginine translocation) pathway signal sequence HMY34_18510 PF07992 Pyridine nucleotide-disulphide oxidoreductase HMY34_18510 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding HMY34_18515 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HMY34_18550 PF00583 Acetyltransferase (GNAT) family HMY34_18565 PF00485 Phosphoribulokinase / Uridine kinase family HMY34_18570 PF01757 Acyltransferase family HMY34_18580 PF00176 SNF2 family N-terminal domain HMY34_18580 PF00271 Helicase conserved C-terminal domain HMY34_18580 PF12419 SNF2 Helicase protein HMY34_18585 PF01741 Large-conductance mechanosensitive channel, MscL HMY34_18590 PF00899 ThiF family HMY34_18595 PF00593 TonB dependent receptor HMY34_18595 PF07715 TonB-dependent Receptor Plug Domain HMY34_18610 PF02082 Transcriptional regulator HMY34_18615 PF01722 BolA-like protein HMY34_18620 PF07726 ATPase family associated with various cellular activities (AAA) HMY34_18620 PF17863 AAA lid domain HMY34_18625 PF01882 Protein of unknown function DUF58 HMY34_18655 PF00580 UvrD/REP helicase N-terminal domain HMY34_18655 PF13361 UvrD-like helicase C-terminal domain HMY34_18665 PF02463 RecF/RecN/SMC N terminal domain HMY34_18675 PF01510 N-acetylmuramoyl-L-alanine amidase HMY34_18685 PF00464 Serine hydroxymethyltransferase HMY34_18690 PF03477 ATP cone domain HMY34_18695 PF01872 RibD C-terminal domain HMY34_18695 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HMY34_18700 PF00677 Lumazine binding domain HMY34_18705 PF00925 GTP cyclohydrolase II HMY34_18705 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HMY34_18710 PF00885 6,7-dimethyl-8-ribityllumazine synthase HMY34_18715 PF01029 NusB family HMY34_18730 PF00692 dUTPase HMY34_18730 PF00692 dUTPase HMY34_18750 PF00899 ThiF family HMY34_18755 PF00709 Adenylosuccinate synthetase HMY34_18760 PF13393 Histidyl-tRNA synthetase HMY34_18775 PF12221 Bacterial membrane protein N terminal HMY34_18775 PF01145 SPFH domain / Band 7 family HMY34_18785 PF00089 Trypsin HMY34_18795 PF00294 pfkB family carbohydrate kinase HMY34_18805 PF01471 Putative peptidoglycan binding domain HMY34_18805 PF07486 Cell Wall Hydrolase HMY34_18810 PF00155 Aminotransferase class I and II HMY34_18820 PF00795 Carbon-nitrogen hydrolase HMY34_18825 PF04371 Porphyromonas-type peptidyl-arginine deiminase HMY34_18830 PF00255 Glutathione peroxidase HMY34_18840 PF02463 RecF/RecN/SMC N terminal domain HMY34_18845 PF01513 ATP-NAD kinase HMY34_18850 PF01628 HrcA protein C terminal domain HMY34_18850 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HMY34_18855 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HMY34_18855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HMY34_18860 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HMY34_18860 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HMY34_18865 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HMY34_18870 PF08011 PD-(D/E)XK nuclease superfamily HMY34_18870 PF09820 Predicted AAA-ATPase HMY34_18880 PF05257 CHAP domain HMY34_18880 PF01476 LysM domain HMY34_18890 PF00490 Delta-aminolevulinic acid dehydratase HMY34_18895 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HMY34_18895 PF08501 Shikimate dehydrogenase substrate binding domain HMY34_18895 PF01488 Shikimate / quinate 5-dehydrogenase HMY34_18905 PF02545 Maf-like protein HMY34_18915 PF01783 Ribosomal L32p protein family HMY34_18920 PF02504 Fatty acid synthesis protein HMY34_18925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMY34_18925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMY34_18930 PF01928 CYTH domain HMY34_18935 PF00271 Helicase conserved C-terminal domain HMY34_18935 PF00270 DEAD/DEAH box helicase HMY34_18955 PF00155 Aminotransferase class I and II HMY34_18960 PF02153 Prephenate dehydrogenase HMY34_18965 PF12146 Serine aminopeptidase, S33 HMY34_18970 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HMY34_18975 PF02224 Cytidylate kinase HMY34_18980 PF00575 S1 RNA binding domain HMY34_18985 PF00216 Bacterial DNA-binding protein HMY34_18990 PF18073 Rubredoxin metal binding domain HMY34_18995 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HMY34_19000 PF04356 Protein of unknown function (DUF489) HMY34_19010 PF00293 NUDIX domain HMY34_19015 PF16078 2-oxoglutarate dehydrogenase N-terminus HMY34_19015 PF16870 2-oxoglutarate dehydrogenase C-terminal HMY34_19015 PF02779 Transketolase, pyrimidine binding domain HMY34_19015 PF00676 Dehydrogenase E1 component HMY34_19030 PF03781 Sulfatase-modifying factor enzyme 1 HMY34_19055 PF01207 Dihydrouridine synthase (Dus) HMY34_19075 PF04204 Homoserine O-succinyltransferase HMY34_19095 PF04381 Putative exonuclease, RdgC HMY34_19105 PF01588 Putative tRNA binding domain HMY34_19105 PF09334 tRNA synthetases class I (M) HMY34_19125 PF04650 YSIRK type signal peptide HMY34_19125 PF17961 Bacterial Ig domain HMY34_19125 PF17210 SdrD B-like domain HMY34_19125 PF00746 LPXTG cell wall anchor motif HMY34_19130 PF03358 NADPH-dependent FMN reductase HMY34_19140 PF02542 YgbB family HMY34_19145 PF01329 Pterin 4 alpha carbinolamine dehydratase HMY34_19155 PF00749 tRNA synthetases class I (E and Q), catalytic domain HMY34_19160 PF01258 Prokaryotic dksA/traR C4-type zinc finger HMY34_19175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HMY34_19175 PF02785 Biotin carboxylase C-terminal domain HMY34_19175 PF00289 Biotin carboxylase, N-terminal domain HMY34_19180 PF00364 Biotin-requiring enzyme HMY34_19185 PF01220 Dehydroquinase class II HMY34_19190 PF05872 Bacterial protein of unknown function (DUF853) HMY34_19210 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HMY34_19215 PF09312 SurA N-terminal domain HMY34_19215 PF00639 PPIC-type PPIASE domain HMY34_19220 PF04453 LPS transport system D HMY34_19220 PF03968 OstA-like protein HMY34_19230 PF07687 Peptidase dimerisation domain HMY34_19230 PF01546 Peptidase family M20/M25/M40 HMY34_19235 PF03960 ArsC family HMY34_19245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HMY34_19245 PF14824 Sirohaem biosynthesis protein central HMY34_19245 PF10414 Sirohaem synthase dimerisation region HMY34_19265 PF01702 Queuine tRNA-ribosyltransferase HMY34_19275 PF01938 TRAM domain HMY34_19275 PF04055 Radical SAM superfamily HMY34_19275 PF00919 Uncharacterized protein family UPF0004 HMY34_19285 PF00920 Dehydratase family HMY34_19290 PF01081 KDPG and KHG aldolase HMY34_19305 PF02885 Glycosyl transferase family, helical bundle domain HMY34_19305 PF00591 Glycosyl transferase family, a/b domain HMY34_19310 PF00218 Indole-3-glycerol phosphate synthase HMY34_19315 PF01790 Prolipoprotein diacylglyceryl transferase HMY34_19320 PF00303 Thymidylate synthase HMY34_19325 PF00364 Biotin-requiring enzyme HMY34_19325 PF02785 Biotin carboxylase C-terminal domain HMY34_19325 PF00289 Biotin carboxylase, N-terminal domain HMY34_19325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HMY34_19325 PF00682 HMGL-like HMY34_19325 PF02436 Conserved carboxylase domain HMY34_19330 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_19330 PF12911 N-terminal TM domain of oligopeptide transport permease C HMY34_19335 PF00528 Binding-protein-dependent transport system inner membrane component HMY34_19340 PF01022 Bacterial regulatory protein, arsR family HMY34_19345 PF02517 CPBP intramembrane metalloprotease HMY34_19350 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HMY34_19350 PF07685 CobB/CobQ-like glutamine amidotransferase domain HMY34_19355 PF01521 Iron-sulphur cluster biosynthesis HMY34_19360 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HMY34_19360 PF07730 Histidine kinase HMY34_19360 PF00672 HAMP domain HMY34_19360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HMY34_19365 PF00196 Bacterial regulatory proteins, luxR family HMY34_19365 PF00072 Response regulator receiver domain HMY34_19370 PF00581 Rhodanese-like domain HMY34_19370 PF01206 Sulfurtransferase TusA HMY34_19380 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HMY34_19385 PF12849 PBP superfamily domain HMY34_19395 PF01557 Fumarylacetoacetate (FAA) hydrolase family HMY34_19400 PF03350 Uncharacterized protein family, UPF0114 HMY34_19405 PF05175 Methyltransferase small domain HMY34_19485 PF01209 ubiE/COQ5 methyltransferase family HMY34_19495 PF06123 Inner membrane protein CreD HMY34_19505 PF08298 PrkA AAA domain HMY34_19505 PF06798 PrkA serine protein kinase C-terminal domain HMY34_19510 PF04285 Protein of unknown function (DUF444) HMY34_19515 PF04293 SpoVR like protein HMY34_19520 PF00196 Bacterial regulatory proteins, luxR family HMY34_19520 PF00072 Response regulator receiver domain HMY34_19525 PF01339 CheB methylesterase HMY34_19525 PF01739 CheR methyltransferase, SAM binding domain HMY34_19525 PF03705 CheR methyltransferase, all-alpha domain HMY34_19525 PF08448 PAS fold HMY34_19535 PF00529 HlyD membrane-fusion protein of T1SS HMY34_19535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HMY34_19540 PF00873 AcrB/AcrD/AcrF family HMY34_19550 PF09371 Tex-like protein N-terminal domain HMY34_19550 PF16921 Tex protein YqgF-like domain HMY34_19550 PF17674 HHH domain HMY34_19550 PF00575 S1 RNA binding domain HMY34_19560 PF08264 Anticodon-binding domain of tRNA HMY34_19560 PF00133 tRNA synthetases class I (I, L, M and V) HMY34_19560 PF13603 Leucyl-tRNA synthetase, Domain 2 HMY34_19570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HMY34_19570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HMY34_19575 PF10672 S-adenosylmethionine-dependent methyltransferase HMY34_19575 PF02926 THUMP domain HMY34_19575 PF01170 Putative RNA methylase family UPF0020 HMY34_19585 PF00589 Phage integrase family HMY34_19590 PF01336 OB-fold nucleic acid binding domain HMY34_19590 PF02938 GAD domain HMY34_19590 PF00152 tRNA synthetases class II (D, K and N) HMY34_19600 PF13505 Outer membrane protein beta-barrel domain HMY34_19610 PF00106 short chain dehydrogenase HMY34_19665 PF11740 Plasmid replication region DNA-binding N-term HMY34_19690 PF09115 DNA polymerase III, delta subunit, C terminal HMY34_19695 PF02223 Thymidylate kinase HMY34_19700 PF02618 YceG-like family HMY34_19705 PF01063 Amino-transferase class IV HMY34_19710 PF04715 Anthranilate synthase component I, N terminal region HMY34_19710 PF00425 chorismate binding enzyme HMY34_19715 PF00109 Beta-ketoacyl synthase, N-terminal domain HMY34_19715 PF02801 Beta-ketoacyl synthase, C-terminal domain HMY34_19720 PF00550 Phosphopantetheine attachment site HMY34_19730 PF00698 Acyl transferase domain HMY34_19735 PF01176 Translation initiation factor 1A / IF-1 HMY34_19740 PF10431 C-terminal, D2-small domain, of ClpB protein HMY34_19740 PF02861 Clp amino terminal domain, pathogenicity island component HMY34_19740 PF17871 AAA lid domain HMY34_19740 PF00004 ATPase family associated with various cellular activities (AAA) HMY34_19740 PF07724 AAA domain (Cdc48 subfamily) HMY34_19745 PF02617 ATP-dependent Clp protease adaptor protein ClpS HMY34_19760 PF00180 Isocitrate/isopropylmalate dehydrogenase HMY34_19785 PF01051 Initiator Replication protein HMY34_19815 PF13614 AAA domain HMY34_19855 PF02796 Helix-turn-helix domain of resolvase HMY34_19855 PF00239 Resolvase, N terminal domain HMY34_19905 PF11740 Plasmid replication region DNA-binding N-term HMY34_19965 PF02796 Helix-turn-helix domain of resolvase HMY34_19965 PF00239 Resolvase, N terminal domain HMY34_20010 PF04231 Endonuclease I HMY34_20020 PF07015 VirC1 protein