locus-tag class description TMO_0001 PF11638 DnaA N-terminal domain TMO_0001 PF08299 Bacterial dnaA protein helix-turn-helix TMO_0001 PF00308 Bacterial dnaA protein TMO_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain TMO_0002 PF02767 DNA polymerase III beta subunit, central domain TMO_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain TMO_0003 PF02463 RecF/RecN/SMC N terminal domain TMO_0004 PF00204 DNA gyrase B TMO_0004 PF00986 DNA gyrase B subunit, carboxyl terminus TMO_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0004 PF01751 Toprim domain TMO_0007 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TMO_0008 PF00912 Transglycosylase TMO_0008 PF00905 Penicillin binding protein transpeptidase domain TMO_0009 PF07690 Major Facilitator Superfamily TMO_0010 PF00285 Citrate synthase, C-terminal domain TMO_0011 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TMO_0013 PF08502 LeuA allosteric (dimerisation) domain TMO_0013 PF00682 HMGL-like TMO_0016 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0017 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0018 PF00005 ABC transporter TMO_0018 PF08402 TOBE domain TMO_0021 PF00005 ABC transporter TMO_0023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0023 PF00512 His Kinase A (phospho-acceptor) domain TMO_0024 PF00072 Response regulator receiver domain TMO_0024 PF02954 Bacterial regulatory protein, Fis family TMO_0026 PF00072 Response regulator receiver domain TMO_0026 PF00486 Transcriptional regulatory protein, C terminal TMO_0027 PF00202 Aminotransferase class-III TMO_0028 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TMO_0028 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TMO_0029 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TMO_0029 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TMO_0030 PF01430 Hsp33 protein TMO_0032 PF01614 Bacterial transcriptional regulator TMO_0032 PF09339 IclR helix-turn-helix domain TMO_0034 PF00144 Beta-lactamase TMO_0042 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) TMO_0042 PF08548 Peptidase M10 serralysin C terminal TMO_0042 PF12708 Pectate lyase superfamily protein TMO_0065 PF01381 Helix-turn-helix TMO_0081 PF00206 Lyase TMO_0081 PF10415 Fumarase C C-terminus TMO_0085 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TMO_0085 PF03900 Porphobilinogen deaminase, C-terminal domain TMO_0086 PF00814 Glycoprotease family TMO_0090 PF01925 Sulfite exporter TauE/SafE TMO_0092 PF03795 YCII-related domain TMO_0095 PF16177 Acetyl-coenzyme A synthetase N-terminus TMO_0095 PF00501 AMP-binding enzyme TMO_0095 PF13193 AMP-binding enzyme C-terminal domain TMO_0099 PF07896 Protein of unknown function (DUF1674) TMO_0100 PF01435 Peptidase family M48 TMO_0101 PF01029 NusB family TMO_0101 PF01189 16S rRNA methyltransferase RsmB/F TMO_0102 PF00834 Ribulose-phosphate 3 epimerase family TMO_0105 PF01458 Uncharacterized protein family (UPF0051) TMO_0106 PF00005 ABC transporter TMO_0107 PF01458 Uncharacterized protein family (UPF0051) TMO_0108 PF00266 Aminotransferase class-V TMO_0109 PF01592 NifU-like N terminal domain TMO_0110 PF01883 Iron-sulfur cluster assembly protein TMO_0115 PF02028 BCCT, betaine/carnitine/choline family transporter TMO_0120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0120 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0122 PF01923 Cobalamin adenosyltransferase TMO_0123 PF01012 Electron transfer flavoprotein domain TMO_0124 PF00766 Electron transfer flavoprotein FAD-binding domain TMO_0124 PF01012 Electron transfer flavoprotein domain TMO_0125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_0125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_0126 PF08534 Redoxin TMO_0127 PF00206 Lyase TMO_0127 PF14698 Argininosuccinate lyase C-terminal TMO_0128 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TMO_0128 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TMO_0129 PF11734 TilS substrate C-terminal domain TMO_0129 PF01171 PP-loop family TMO_0129 PF00156 Phosphoribosyl transferase domain TMO_0131 PF00005 ABC transporter TMO_0139 PF02153 Prephenate dehydrogenase TMO_0140 PF00155 Aminotransferase class I and II TMO_0142 PF00561 alpha/beta hydrolase fold TMO_0143 PF07021 Methionine biosynthesis protein MetW TMO_0143 PF00561 alpha/beta hydrolase fold TMO_0144 PF00989 PAS fold TMO_0144 PF00512 His Kinase A (phospho-acceptor) domain TMO_0144 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0145 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_0146 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TMO_0147 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_0148 PF08241 Methyltransferase domain TMO_0149 PF16123 Hydroxyacylglutathione hydrolase C-terminus TMO_0149 PF00753 Metallo-beta-lactamase superfamily TMO_0150 PF00043 Glutathione S-transferase, C-terminal domain TMO_0150 PF13417 Glutathione S-transferase, N-terminal domain TMO_0154 PF00108 Thiolase, N-terminal domain TMO_0154 PF02803 Thiolase, C-terminal domain TMO_0156 PF07879 PHB/PHA accumulation regulator DNA-binding domain TMO_0156 PF05233 PHB accumulation regulatory domain TMO_0158 PF00512 His Kinase A (phospho-acceptor) domain TMO_0158 PF00072 Response regulator receiver domain TMO_0158 PF01627 Hpt domain TMO_0158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0161 PF02653 Branched-chain amino acid transport system / permease component TMO_0162 PF00005 ABC transporter TMO_0163 PF00300 Histidine phosphatase superfamily (branch 1) TMO_0163 PF00293 NUDIX domain TMO_0165 PF04279 Intracellular septation protein A TMO_0166 PF00448 SRP54-type protein, GTPase domain TMO_0166 PF02881 SRP54-type protein, helical bundle domain TMO_0167 PF04055 Radical SAM superfamily TMO_0167 PF00919 Uncharacterized protein family UPF0004 TMO_0168 PF01678 Diaminopimelate epimerase TMO_0169 PF00512 His Kinase A (phospho-acceptor) domain TMO_0169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0170 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TMO_0170 PF05221 S-adenosyl-L-homocysteine hydrolase TMO_0171 PF00381 PTS HPr component phosphorylation site TMO_0172 PF03830 PTS system sorbose subfamily IIB component TMO_0172 PF03610 PTS system fructose IIA component TMO_0173 PF03668 P-loop ATPase protein family TMO_0174 PF02603 HPr Serine kinase N terminus TMO_0174 PF07475 HPr Serine kinase C-terminal domain TMO_0175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TMO_0176 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TMO_0176 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TMO_0177 PF04552 Sigma-54, DNA binding domain TMO_0177 PF04963 Sigma-54 factor, core binding domain TMO_0177 PF00309 Sigma-54 factor, Activator interacting domain (AID) TMO_0178 PF00005 ABC transporter TMO_0181 PF01380 SIS domain TMO_0181 PF00571 CBS domain TMO_0182 PF01612 3'-5' exonuclease TMO_0182 PF00570 HRDC domain TMO_0184 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_0184 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TMO_0185 PF01645 Conserved region in glutamate synthase TMO_0185 PF01493 GXGXG motif TMO_0185 PF04898 Glutamate synthase central domain TMO_0185 PF00310 Glutamine amidotransferases class-II TMO_0186 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TMO_0186 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TMO_0187 PF00892 EamA-like transporter family TMO_0188 PF00043 Glutathione S-transferase, C-terminal domain TMO_0188 PF13417 Glutathione S-transferase, N-terminal domain TMO_0189 PF08331 Domain of unknown function (DUF1730) TMO_0191 PF00005 ABC transporter TMO_0194 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TMO_0195 PF00707 Translation initiation factor IF-3, C-terminal domain TMO_0195 PF05198 Translation initiation factor IF-3, N-terminal domain TMO_0196 PF01632 Ribosomal protein L35 TMO_0197 PF00453 Ribosomal protein L20 TMO_0198 PF01409 tRNA synthetases class II core domain (F) TMO_0198 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TMO_0199 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TMO_0199 PF01588 Putative tRNA binding domain TMO_0199 PF03147 Ferredoxin-fold anticodon binding domain TMO_0199 PF03484 tRNA synthetase B5 domain TMO_0199 PF03483 B3/4 domain TMO_0200 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_0201 PF06421 GTP-binding protein LepA C-terminus TMO_0201 PF03144 Elongation factor Tu domain 2 TMO_0201 PF00679 Elongation factor G C-terminus TMO_0201 PF00009 Elongation factor Tu GTP binding domain TMO_0205 PF00484 Carbonic anhydrase TMO_0213 PF01322 Cytochrome C' TMO_0214 PF00672 HAMP domain TMO_0214 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_0214 PF17200 Single Cache domain 2 TMO_0215 PF01266 FAD dependent oxidoreductase TMO_0216 PF00842 Alanine racemase, C-terminal domain TMO_0216 PF01168 Alanine racemase, N-terminal domain TMO_0217 PF01037 Lrp/AsnC ligand binding domain TMO_0222 PF07690 Major Facilitator Superfamily TMO_0226 PF00501 AMP-binding enzyme TMO_0226 PF13193 AMP-binding enzyme C-terminal domain TMO_0228 PF00583 Acetyltransferase (GNAT) family TMO_0229 PF00672 HAMP domain TMO_0229 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_0230 PF08264 Anticodon-binding domain of tRNA TMO_0230 PF00133 tRNA synthetases class I (I, L, M and V) TMO_0231 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0231 PF03466 LysR substrate binding domain TMO_0233 PF00027 Cyclic nucleotide-binding domain TMO_0233 PF13545 Crp-like helix-turn-helix domain TMO_0235 PF00596 Class II Aldolase and Adducin N-terminal domain TMO_0236 PF01738 Dienelactone hydrolase family TMO_0237 PF00912 Transglycosylase TMO_0241 PF03641 Possible lysine decarboxylase TMO_0242 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_0243 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TMO_0244 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_0246 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0246 PF03466 LysR substrate binding domain TMO_0248 PF17850 CysA C-terminal regulatory domain TMO_0248 PF00005 ABC transporter TMO_0248 PF12857 TOBE-like domain TMO_0250 PF01047 MarR family TMO_0251 PF00561 alpha/beta hydrolase fold TMO_0252 PF00743 Flavin-binding monooxygenase-like TMO_0253 PF00440 Bacterial regulatory proteins, tetR family TMO_0253 PF08360 QacR-like protein, C-terminal region TMO_0254 PF04304 Protein of unknown function (DUF454) TMO_0255 PF00199 Catalase TMO_0255 PF06628 Catalase-related immune-responsive TMO_0256 PF01494 FAD binding domain TMO_0257 PF07690 Major Facilitator Superfamily TMO_0258 PF00593 TonB dependent receptor TMO_0258 PF07715 TonB-dependent Receptor Plug Domain TMO_0259 PF02311 AraC-like ligand binding domain TMO_0259 PF12833 Helix-turn-helix domain TMO_0260 PF01545 Cation efflux family TMO_0262 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0262 PF03466 LysR substrate binding domain TMO_0264 PF09180 Prolyl-tRNA synthetase, C-terminal TMO_0264 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TMO_0269 PF00596 Class II Aldolase and Adducin N-terminal domain TMO_0270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_0272 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0272 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_0273 PF00005 ABC transporter TMO_0273 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_0274 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TMO_0275 PF00850 Histone deacetylase domain TMO_0276 PF00202 Aminotransferase class-III TMO_0277 PF01943 Polysaccharide biosynthesis protein TMO_0281 PF07729 FCD domain TMO_0281 PF00392 Bacterial regulatory proteins, gntR family TMO_0283 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_0286 PF00378 Enoyl-CoA hydratase/isomerase TMO_0287 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0288 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0289 PF08402 TOBE domain TMO_0289 PF00005 ABC transporter TMO_0290 PF13416 Bacterial extracellular solute-binding protein TMO_0291 PF00120 Glutamine synthetase, catalytic domain TMO_0292 PF00005 ABC transporter TMO_0292 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_0293 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_0293 PF00005 ABC transporter TMO_0295 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0296 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_0297 PF03576 Peptidase family S58 TMO_0298 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TMO_0298 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TMO_0301 PF03807 NADP oxidoreductase coenzyme F420-dependent TMO_0301 PF14748 Pyrroline-5-carboxylate reductase dimerisation TMO_0303 PF01738 Dienelactone hydrolase family TMO_0306 PF01926 50S ribosome-binding GTPase TMO_0306 PF06071 Protein of unknown function (DUF933) TMO_0307 PF01195 Peptidyl-tRNA hydrolase TMO_0308 PF14693 Ribosomal protein TL5, C-terminal domain TMO_0308 PF01386 Ribosomal L25p family TMO_0309 PF14572 Phosphoribosyl synthetase-associated domain TMO_0309 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TMO_0311 PF13382 Adenine deaminase C-terminal domain TMO_0311 PF01979 Amidohydrolase family TMO_0314 PF01790 Prolipoprotein diacylglyceryl transferase TMO_0317 PF01022 Bacterial regulatory protein, arsR family TMO_0318 PF00830 Ribosomal L28 family TMO_0319 PF02592 Putative vitamin uptake transporter TMO_0320 PF00158 Sigma-54 interaction domain TMO_0320 PF01590 GAF domain TMO_0321 PF00005 ABC transporter TMO_0322 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0323 PF00005 ABC transporter TMO_0324 PF02560 Cyanate lyase C-terminal domain TMO_0326 PF13458 Periplasmic binding protein TMO_0327 PF02653 Branched-chain amino acid transport system / permease component TMO_0328 PF02653 Branched-chain amino acid transport system / permease component TMO_0328 PF11862 Domain of unknown function (DUF3382) TMO_0329 PF00005 ABC transporter TMO_0330 PF00005 ABC transporter TMO_0331 PF01979 Amidohydrolase family TMO_0331 PF13382 Adenine deaminase C-terminal domain TMO_0332 PF13744 Helix-turn-helix domain TMO_0334 PF05973 Phage derived protein Gp49-like (DUF891) TMO_0335 PF11775 Cobalamin biosynthesis protein CobT VWA domain TMO_0335 PF06213 Cobalamin biosynthesis protein CobT TMO_0336 PF12556 Cobaltochelatase CobS subunit N terminal TMO_0336 PF08406 CbbQ/NirQ/NorQ C-terminal TMO_0336 PF07728 AAA domain (dynein-related subfamily) TMO_0337 PF00226 DnaJ domain TMO_0338 PF01381 Helix-turn-helix TMO_0343 PF00571 CBS domain TMO_0343 PF03471 Transporter associated domain TMO_0343 PF01595 Cyclin M transmembrane N-terminal domain TMO_0344 PF01761 3-dehydroquinate synthase TMO_0345 PF01202 Shikimate kinase TMO_0348 PF00589 Phage integrase family TMO_0348 PF02899 Phage integrase, N-terminal SAM-like domain TMO_0349 PF01614 Bacterial transcriptional regulator TMO_0349 PF09339 IclR helix-turn-helix domain TMO_0350 PF03328 HpcH/HpaI aldolase/citrate lyase family TMO_0351 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TMO_0353 PF07516 SecA Wing and Scaffold domain TMO_0353 PF01043 SecA preprotein cross-linking domain TMO_0353 PF07517 SecA DEAD-like domain TMO_0353 PF02810 SEC-C motif TMO_0354 PF05698 Bacterial trigger factor protein (TF) C-terminus TMO_0355 PF01960 ArgJ family TMO_0356 PF00293 NUDIX domain TMO_0357 PF08241 Methyltransferase domain TMO_0359 PF00462 Glutaredoxin TMO_0360 PF00795 Carbon-nitrogen hydrolase TMO_0361 PF04172 LrgB-like family TMO_0362 PF03788 LrgA family TMO_0363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0363 PF03466 LysR substrate binding domain TMO_0364 PF07690 Major Facilitator Superfamily TMO_0367 PF01970 Tripartite tricarboxylate transporter TctA family TMO_0370 PF00072 Response regulator receiver domain TMO_0370 PF00486 Transcriptional regulatory protein, C terminal TMO_0372 PF00512 His Kinase A (phospho-acceptor) domain TMO_0372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0375 PF13840 ACT domain TMO_0375 PF01842 ACT domain TMO_0375 PF00696 Amino acid kinase family TMO_0376 PF01590 GAF domain TMO_0376 PF05524 PEP-utilising enzyme, N-terminal TMO_0376 PF00391 PEP-utilising enzyme, mobile domain TMO_0376 PF02896 PEP-utilising enzyme, TIM barrel domain TMO_0378 PF04551 GcpE protein TMO_0379 PF13393 Histidyl-tRNA synthetase TMO_0379 PF03129 Anticodon binding domain TMO_0380 PF03462 PCRF domain TMO_0380 PF00472 RF-1 domain TMO_0381 PF17827 PrmC N-terminal domain TMO_0381 PF13847 Methyltransferase domain TMO_0384 PF10431 C-terminal, D2-small domain, of ClpB protein TMO_0384 PF17871 AAA lid domain TMO_0384 PF07724 AAA domain (Cdc48 subfamily) TMO_0384 PF00004 ATPase family associated with various cellular activities (AAA) TMO_0384 PF02861 Clp amino terminal domain, pathogenicity island component TMO_0385 PF08525 Opacity-associated protein A N-terminal motif TMO_0385 PF01476 LysM domain TMO_0385 PF01551 Peptidase family M23 TMO_0387 PF00455 DeoR C terminal sensor domain TMO_0387 PF08220 DeoR-like helix-turn-helix domain TMO_0388 PF07732 Multicopper oxidase TMO_0388 PF07731 Multicopper oxidase TMO_0388 PF00394 Multicopper oxidase TMO_0390 PF00593 TonB dependent receptor TMO_0390 PF07715 TonB-dependent Receptor Plug Domain TMO_0393 PF02525 Flavodoxin-like fold TMO_0394 PF03466 LysR substrate binding domain TMO_0394 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0395 PF03466 LysR substrate binding domain TMO_0395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0397 PF01266 FAD dependent oxidoreductase TMO_0399 PF16868 NMT1-like family TMO_0400 PF00924 Mechanosensitive ion channel TMO_0401 PF01061 ABC-2 type transporter TMO_0403 PF01580 FtsK/SpoIIIE family TMO_0403 PF09397 Ftsk gamma domain TMO_0403 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TMO_0403 PF17854 FtsK alpha domain TMO_0404 PF00255 Glutathione peroxidase TMO_0406 PF00850 Histone deacetylase domain TMO_0411 PF00027 Cyclic nucleotide-binding domain TMO_0411 PF00520 Ion transport protein TMO_0412 PF00248 Aldo/keto reductase family TMO_0413 PF01451 Low molecular weight phosphotyrosine protein phosphatase TMO_0414 PF00311 Phosphoenolpyruvate carboxylase TMO_0415 PF03466 LysR substrate binding domain TMO_0415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0416 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TMO_0416 PF00361 Proton-conducting membrane transporter TMO_0417 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) TMO_0419 PF00356 Bacterial regulatory proteins, lacI family TMO_0420 PF05524 PEP-utilising enzyme, N-terminal TMO_0420 PF00381 PTS HPr component phosphorylation site TMO_0420 PF02896 PEP-utilising enzyme, TIM barrel domain TMO_0420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TMO_0420 PF00391 PEP-utilising enzyme, mobile domain TMO_0421 PF00294 pfkB family carbohydrate kinase TMO_0422 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TMO_0423 PF00857 Isochorismatase family TMO_0424 PF00593 TonB dependent receptor TMO_0424 PF07715 TonB-dependent Receptor Plug Domain TMO_0425 PF00202 Aminotransferase class-III TMO_0427 PF00155 Aminotransferase class I and II TMO_0428 PF04055 Radical SAM superfamily TMO_0428 PF06968 Biotin and Thiamin Synthesis associated domain TMO_0430 PF00384 Molybdopterin oxidoreductase TMO_0433 PF00005 ABC transporter TMO_0433 PF08402 TOBE domain TMO_0436 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0439 PF03922 OmpW family TMO_0440 PF04055 Radical SAM superfamily TMO_0441 PF00561 alpha/beta hydrolase fold TMO_0443 PF01266 FAD dependent oxidoreductase TMO_0443 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TMO_0444 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TMO_0444 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TMO_0448 PF03814 Potassium-transporting ATPase A subunit TMO_0450 PF02669 K+-transporting ATPase, c chain TMO_0451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0451 PF00512 His Kinase A (phospho-acceptor) domain TMO_0451 PF13492 GAF domain TMO_0451 PF13493 Domain of unknown function (DUF4118) TMO_0451 PF02702 Osmosensitive K+ channel His kinase sensor domain TMO_0452 PF00486 Transcriptional regulatory protein, C terminal TMO_0452 PF00072 Response regulator receiver domain TMO_0454 PF02211 Nitrile hydratase beta subunit TMO_0455 PF02979 Nitrile hydratase, alpha chain TMO_0456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0456 PF03466 LysR substrate binding domain TMO_0462 PF07729 FCD domain TMO_0462 PF00392 Bacterial regulatory proteins, gntR family TMO_0463 PF01070 FMN-dependent dehydrogenase TMO_0469 PF00072 Response regulator receiver domain TMO_0469 PF00486 Transcriptional regulatory protein, C terminal TMO_0470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0470 PF08918 PhoQ Sensor TMO_0471 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TMO_0472 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_0472 PF01799 [2Fe-2S] binding domain TMO_0473 PF12852 Cupin TMO_0473 PF12833 Helix-turn-helix domain TMO_0474 PF00501 AMP-binding enzyme TMO_0474 PF13193 AMP-binding enzyme C-terminal domain TMO_0478 PF02569 Pantoate-beta-alanine ligase TMO_0481 PF00885 6,7-dimethyl-8-ribityllumazine synthase TMO_0483 PF00378 Enoyl-CoA hydratase/isomerase TMO_0484 PF02310 B12 binding domain TMO_0484 PF04055 Radical SAM superfamily TMO_0485 PF04055 Radical SAM superfamily TMO_0485 PF02310 B12 binding domain TMO_0486 PF00668 Condensation domain TMO_0486 PF13193 AMP-binding enzyme C-terminal domain TMO_0486 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_0486 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_0486 PF00501 AMP-binding enzyme TMO_0486 PF16197 Ketoacyl-synthetase C-terminal extension TMO_0486 PF00202 Aminotransferase class-III TMO_0486 PF00550 Phosphopantetheine attachment site TMO_0487 PF00550 Phosphopantetheine attachment site TMO_0487 PF16197 Ketoacyl-synthetase C-terminal extension TMO_0487 PF08240 Alcohol dehydrogenase GroES-like domain TMO_0487 PF00698 Acyl transferase domain TMO_0487 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_0487 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_0487 PF08659 KR domain TMO_0487 PF14765 Polyketide synthase dehydratase TMO_0489 PF00550 Phosphopantetheine attachment site TMO_0490 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_0490 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_0494 PF00795 Carbon-nitrogen hydrolase TMO_0495 PF00005 ABC transporter TMO_0496 PF00005 ABC transporter TMO_0503 PF06055 Exopolysaccharide synthesis, ExoD TMO_0505 PF03824 High-affinity nickel-transport protein TMO_0506 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0506 PF00512 His Kinase A (phospho-acceptor) domain TMO_0506 PF09308 LuxQ, periplasmic TMO_0506 PF00072 Response regulator receiver domain TMO_0508 PF03073 TspO/MBR family TMO_0509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0509 PF00512 His Kinase A (phospho-acceptor) domain TMO_0509 PF00989 PAS fold TMO_0510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0510 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0513 PF13193 AMP-binding enzyme C-terminal domain TMO_0513 PF00501 AMP-binding enzyme TMO_0514 PF07690 Major Facilitator Superfamily TMO_0515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0515 PF03466 LysR substrate binding domain TMO_0516 PF04073 Aminoacyl-tRNA editing domain TMO_0517 PF02230 Phospholipase/Carboxylesterase TMO_0518 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_0519 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_0520 PF01370 NAD dependent epimerase/dehydratase family TMO_0521 PF08361 MAATS-type transcriptional repressor, C-terminal region TMO_0521 PF00440 Bacterial regulatory proteins, tetR family TMO_0522 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0522 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0522 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0523 PF02515 CoA-transferase family III TMO_0525 PF07683 Cobalamin synthesis protein cobW C-terminal domain TMO_0525 PF02492 CobW/HypB/UreG, nucleotide-binding domain TMO_0526 PF02649 Type I GTP cyclohydrolase folE2 TMO_0527 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_0528 PF02824 TGS domain TMO_0528 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TMO_0528 PF03129 Anticodon binding domain TMO_0528 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TMO_0529 PF01979 Amidohydrolase family TMO_0530 PF00440 Bacterial regulatory proteins, tetR family TMO_0530 PF17932 Tetracyclin repressor-like, C-terminal domain TMO_0531 PF00067 Cytochrome P450 TMO_0532 PF00378 Enoyl-CoA hydratase/isomerase TMO_0533 PF01411 tRNA synthetases class II (A) TMO_0533 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TMO_0533 PF02272 DHHA1 domain TMO_0536 PF01965 DJ-1/PfpI family TMO_0537 PF00583 Acetyltransferase (GNAT) family TMO_0538 PF00108 Thiolase, N-terminal domain TMO_0538 PF02803 Thiolase, C-terminal domain TMO_0539 PF00117 Glutamine amidotransferase class-I TMO_0539 PF00425 chorismate binding enzyme TMO_0539 PF04715 Anthranilate synthase component I, N terminal region TMO_0540 PF00582 Universal stress protein family TMO_0541 PF00107 Zinc-binding dehydrogenase TMO_0541 PF08240 Alcohol dehydrogenase GroES-like domain TMO_0542 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0542 PF03466 LysR substrate binding domain TMO_0543 PF04444 Catechol dioxygenase N terminus TMO_0543 PF00775 Dioxygenase TMO_0544 PF12833 Helix-turn-helix domain TMO_0547 PF00465 Iron-containing alcohol dehydrogenase TMO_0549 PF03061 Thioesterase superfamily TMO_0550 PF03692 Putative zinc- or iron-chelating domain TMO_0551 PF00501 AMP-binding enzyme TMO_0551 PF13193 AMP-binding enzyme C-terminal domain TMO_0552 PF12729 Four helix bundle sensory module for signal transduction TMO_0552 PF00672 HAMP domain TMO_0552 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_0554 PF00676 Dehydrogenase E1 component TMO_0555 PF02780 Transketolase, C-terminal domain TMO_0555 PF02779 Transketolase, pyrimidine binding domain TMO_0556 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_0557 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TMO_0558 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_0559 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TMO_0559 PF00205 Thiamine pyrophosphate enzyme, central domain TMO_0559 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TMO_0561 PF16658 Class II release factor RF3, C-terminal domain TMO_0561 PF00009 Elongation factor Tu GTP binding domain TMO_0565 PF00565 Staphylococcal nuclease homologue TMO_0566 PF00141 Peroxidase TMO_0567 PF02657 Fe-S metabolism associated domain TMO_0568 PF00596 Class II Aldolase and Adducin N-terminal domain TMO_0570 PF01425 Amidase TMO_0573 PF05138 Phenylacetic acid catabolic protein TMO_0574 PF13614 AAA domain TMO_0577 PF00483 Nucleotidyl transferase TMO_0578 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TMO_0578 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TMO_0578 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TMO_0579 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TMO_0579 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TMO_0579 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TMO_0579 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TMO_0580 PF03741 Integral membrane protein TerC family TMO_0581 PF01590 GAF domain TMO_0581 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_0582 PF00294 pfkB family carbohydrate kinase TMO_0584 PF00768 D-alanyl-D-alanine carboxypeptidase TMO_0584 PF07943 Penicillin-binding protein 5, C-terminal domain TMO_0587 PF02617 ATP-dependent Clp protease adaptor protein ClpS TMO_0588 PF00004 ATPase family associated with various cellular activities (AAA) TMO_0588 PF10431 C-terminal, D2-small domain, of ClpB protein TMO_0588 PF17871 AAA lid domain TMO_0588 PF02861 Clp amino terminal domain, pathogenicity island component TMO_0588 PF07724 AAA domain (Cdc48 subfamily) TMO_0595 PF00975 Thioesterase domain TMO_0595 PF00668 Condensation domain TMO_0595 PF00550 Phosphopantetheine attachment site TMO_0595 PF00501 AMP-binding enzyme TMO_0595 PF13193 AMP-binding enzyme C-terminal domain TMO_0597 PF04820 Tryptophan halogenase TMO_0599 PF13193 AMP-binding enzyme C-terminal domain TMO_0599 PF00501 AMP-binding enzyme TMO_0601 PF01435 Peptidase family M48 TMO_0603 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TMO_0603 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TMO_0603 PF00205 Thiamine pyrophosphate enzyme, central domain TMO_0605 PF00171 Aldehyde dehydrogenase family TMO_0606 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TMO_0607 PF01037 Lrp/AsnC ligand binding domain TMO_0608 PF18327 Proline utilization A proline dehydrogenase N-terminal domain TMO_0608 PF01619 Proline dehydrogenase TMO_0608 PF14850 DNA-binding domain of Proline dehydrogenase TMO_0608 PF00171 Aldehyde dehydrogenase family TMO_0609 PF04204 Homoserine O-succinyltransferase TMO_0611 PF07690 Major Facilitator Superfamily TMO_0615 PF13649 Methyltransferase domain TMO_0616 PF07690 Major Facilitator Superfamily TMO_0618 PF02203 Tar ligand binding domain homologue TMO_0618 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_0618 PF00672 HAMP domain TMO_0620 PF00210 Ferritin-like domain TMO_0621 PF04324 BFD-like [2Fe-2S] binding domain TMO_0622 PF13193 AMP-binding enzyme C-terminal domain TMO_0622 PF00501 AMP-binding enzyme TMO_0624 PF13617 YnbE-like lipoprotein TMO_0628 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_0628 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_0629 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0629 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0629 PF12806 Acetyl-CoA dehydrogenase C-terminal like TMO_0629 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0630 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0631 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0631 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0631 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0632 PF00378 Enoyl-CoA hydratase/isomerase TMO_0632 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_0632 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_0633 PF00005 ABC transporter TMO_0634 PF00005 ABC transporter TMO_0634 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_0636 PF02653 Branched-chain amino acid transport system / permease component TMO_0639 PF13193 AMP-binding enzyme C-terminal domain TMO_0639 PF00501 AMP-binding enzyme TMO_0640 PF01975 Survival protein SurE TMO_0643 PF01636 Phosphotransferase enzyme family TMO_0646 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0646 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0646 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0648 PF00698 Acyl transferase domain TMO_0648 PF08240 Alcohol dehydrogenase GroES-like domain TMO_0648 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_0648 PF00107 Zinc-binding dehydrogenase TMO_0648 PF08659 KR domain TMO_0648 PF16197 Ketoacyl-synthetase C-terminal extension TMO_0648 PF00550 Phosphopantetheine attachment site TMO_0648 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_0648 PF14765 Polyketide synthase dehydratase TMO_0649 PF02743 Cache domain TMO_0649 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_0649 PF00672 HAMP domain TMO_0651 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TMO_0651 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TMO_0654 PF04542 Sigma-70 region 2 TMO_0654 PF00140 Sigma-70 factor, region 1.2 TMO_0654 PF04545 Sigma-70, region 4 TMO_0657 PF00351 Biopterin-dependent aromatic amino acid hydroxylase TMO_0662 PF02615 Malate/L-lactate dehydrogenase TMO_0664 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_0666 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_0669 PF00999 Sodium/hydrogen exchanger family TMO_0672 PF07969 Amidohydrolase family TMO_0677 PF00561 alpha/beta hydrolase fold TMO_0678 PF09335 SNARE associated Golgi protein TMO_0680 PF01467 Cytidylyltransferase-like TMO_0680 PF00294 pfkB family carbohydrate kinase TMO_0681 PF13580 SIS domain TMO_0683 PF01370 NAD dependent epimerase/dehydratase family TMO_0686 PF01507 Phosphoadenosine phosphosulfate reductase family TMO_0687 PF00009 Elongation factor Tu GTP binding domain TMO_0689 PF00501 AMP-binding enzyme TMO_0689 PF13193 AMP-binding enzyme C-terminal domain TMO_0693 PF13452 N-terminal half of MaoC dehydratase TMO_0694 PF02515 CoA-transferase family III TMO_0695 PF01047 MarR family TMO_0696 PF00106 short chain dehydrogenase TMO_0697 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0697 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0697 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0698 PF00501 AMP-binding enzyme TMO_0698 PF13193 AMP-binding enzyme C-terminal domain TMO_0699 PF00378 Enoyl-CoA hydratase/isomerase TMO_0700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_0703 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0704 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0706 PF16363 GDP-mannose 4,6 dehydratase TMO_0707 PF01370 NAD dependent epimerase/dehydratase family TMO_0708 PF02397 Bacterial sugar transferase TMO_0709 PF01370 NAD dependent epimerase/dehydratase family TMO_0710 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TMO_0710 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TMO_0710 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TMO_0712 PF06082 Exopolysaccharide biosynthesis protein YbjH TMO_0713 PF00483 Nucleotidyl transferase TMO_0715 PF01050 Mannose-6-phosphate isomerase TMO_0715 PF00483 Nucleotidyl transferase TMO_0719 PF13358 DDE superfamily endonuclease TMO_0720 PF13592 Winged helix-turn helix TMO_0724 PF08274 PhnA Zinc-Ribbon TMO_0724 PF03831 PhnA domain TMO_0726 PF13977 BetI-type transcriptional repressor, C-terminal TMO_0726 PF00440 Bacterial regulatory proteins, tetR family TMO_0727 PF04235 Protein of unknown function (DUF418) TMO_0729 PF03551 Transcriptional regulator PadR-like family TMO_0731 PF07690 Major Facilitator Superfamily TMO_0732 PF03466 LysR substrate binding domain TMO_0732 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_0733 PF18029 Glyoxalase-like domain TMO_0734 PF07237 Protein of unknown function (DUF1428) TMO_0737 PF01047 MarR family TMO_0738 PF00892 EamA-like transporter family TMO_0739 PF00107 Zinc-binding dehydrogenase TMO_0739 PF16884 N-terminal domain of oxidoreductase TMO_0740 PF00892 EamA-like transporter family TMO_0741 PF02423 Ornithine cyclodeaminase/mu-crystallin family TMO_0743 PF01047 MarR family TMO_0745 PF03960 ArsC family TMO_0746 PF18027 Cytosolic carboxypeptidase N-terminal domain TMO_0746 PF00246 Zinc carboxypeptidase TMO_0747 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_0748 PF00271 Helicase conserved C-terminal domain TMO_0748 PF00270 DEAD/DEAH box helicase TMO_0749 PF00672 HAMP domain TMO_0749 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_0753 PF18030 RimK PreATP-grasp domain TMO_0753 PF08443 RimK-like ATP-grasp domain TMO_0754 PF01554 MatE TMO_0758 PF00990 Diguanylate cyclase, GGDEF domain TMO_0758 PF00563 EAL domain TMO_0758 PF03707 Bacterial signalling protein N terminal repeat TMO_0760 PF08502 LeuA allosteric (dimerisation) domain TMO_0760 PF00682 HMGL-like TMO_0762 PF04085 rod shape-determining protein MreC TMO_0764 PF03717 Penicillin-binding Protein dimerisation domain TMO_0764 PF00905 Penicillin binding protein transpeptidase domain TMO_0765 PF01098 Cell cycle protein TMO_0767 PF13091 PLD-like domain TMO_0768 PF03352 Methyladenine glycosylase TMO_0768 PF00958 GMP synthase C terminal domain TMO_0768 PF13302 Acetyltransferase (GNAT) domain TMO_0768 PF00117 Glutamine amidotransferase class-I TMO_0768 PF13673 Acetyltransferase (GNAT) domain TMO_0769 PF01613 Flavin reductase like domain TMO_0770 PF00440 Bacterial regulatory proteins, tetR family TMO_0770 PF08361 MAATS-type transcriptional repressor, C-terminal region TMO_0780 PF03129 Anticodon binding domain TMO_0780 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TMO_0780 PF02824 TGS domain TMO_0780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TMO_0786 PF03600 Citrate transporter TMO_0787 PF02696 Uncharacterized ACR, YdiU/UPF0061 family TMO_0789 PF00875 DNA photolyase TMO_0789 PF03441 FAD binding domain of DNA photolyase TMO_0790 PF00149 Calcineurin-like phosphoesterase TMO_0791 PF01965 DJ-1/PfpI family TMO_0792 PF01965 DJ-1/PfpI family TMO_0801 PF02653 Branched-chain amino acid transport system / permease component TMO_0803 PF00005 ABC transporter TMO_0803 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_0804 PF00005 ABC transporter TMO_0805 PF00501 AMP-binding enzyme TMO_0805 PF13193 AMP-binding enzyme C-terminal domain TMO_0806 PF01695 IstB-like ATP binding protein TMO_0807 PF00665 Integrase core domain TMO_0808 PF13356 Arm DNA-binding domain TMO_0808 PF00589 Phage integrase family TMO_0811 PF00474 Sodium:solute symporter family TMO_0814 PF00929 Exonuclease TMO_0816 PF12146 Serine aminopeptidase, S33 TMO_0819 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_0820 PF12848 ABC transporter TMO_0820 PF00005 ABC transporter TMO_0821 PF09827 CRISPR associated protein Cas2 TMO_0823 PF04333 MlaA lipoprotein TMO_0824 PF03551 Transcriptional regulator PadR-like family TMO_0824 PF13847 Methyltransferase domain TMO_0825 PF02219 Methylenetetrahydrofolate reductase TMO_0826 PF02574 Homocysteine S-methyltransferase TMO_0826 PF02607 B12 binding domain TMO_0826 PF02965 Vitamin B12 dependent methionine synthase, activation domain TMO_0826 PF00809 Pterin binding enzyme TMO_0826 PF02310 B12 binding domain TMO_0827 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TMO_0827 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TMO_0828 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TMO_0829 PF02233 NAD(P) transhydrogenase beta subunit TMO_0830 PF02668 Taurine catabolism dioxygenase TauD, TfdA family TMO_0831 PF12833 Helix-turn-helix domain TMO_0831 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term TMO_0833 PF01165 Ribosomal protein S21 TMO_0836 PF02222 ATP-grasp domain TMO_0836 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TMO_0837 PF00731 AIR carboxylase TMO_0840 PF03060 Nitronate monooxygenase TMO_0843 PF02441 Flavoprotein TMO_0845 PF00501 AMP-binding enzyme TMO_0845 PF13193 AMP-binding enzyme C-terminal domain TMO_0846 PF00501 AMP-binding enzyme TMO_0846 PF16177 Acetyl-coenzyme A synthetase N-terminus TMO_0846 PF13193 AMP-binding enzyme C-terminal domain TMO_0848 PF07690 Major Facilitator Superfamily TMO_0852 PF00698 Acyl transferase domain TMO_0852 PF08240 Alcohol dehydrogenase GroES-like domain TMO_0852 PF00107 Zinc-binding dehydrogenase TMO_0852 PF16197 Ketoacyl-synthetase C-terminal extension TMO_0852 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_0852 PF08659 KR domain TMO_0852 PF00550 Phosphopantetheine attachment site TMO_0852 PF14765 Polyketide synthase dehydratase TMO_0852 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_0854 PF12706 Beta-lactamase superfamily domain TMO_0856 PF00106 short chain dehydrogenase TMO_0859 PF00440 Bacterial regulatory proteins, tetR family TMO_0859 PF08362 YcdC-like protein, C-terminal region TMO_0863 PF02608 ABC transporter substrate-binding protein PnrA-like TMO_0864 PF03171 2OG-Fe(II) oxygenase superfamily TMO_0864 PF14226 non-haem dioxygenase in morphine synthesis N-terminal TMO_0868 PF04069 Substrate binding domain of ABC-type glycine betaine transport system TMO_0869 PF00528 Binding-protein-dependent transport system inner membrane component TMO_0870 PF00571 CBS domain TMO_0870 PF00005 ABC transporter TMO_0872 PF00011 Hsp20/alpha crystallin family TMO_0873 PF13808 DDE_Tnp_1-associated TMO_0873 PF01609 Transposase DDE domain TMO_0874 PF01197 Ribosomal protein L31 TMO_0875 PF00691 OmpA family TMO_0875 PF13677 Membrane MotB of proton-channel complex MotA/MotB TMO_0878 PF00459 Inositol monophosphatase family TMO_0879 PF08207 Elongation factor P (EF-P) KOW-like domain TMO_0879 PF09285 Elongation factor P, C-terminal TMO_0879 PF01132 Elongation factor P (EF-P) OB domain TMO_0880 PF02581 Thiamine monophosphate synthase TMO_0881 PF01791 DeoC/LacD family aldolase TMO_0883 PF00162 Phosphoglycerate kinase TMO_0884 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TMO_0884 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TMO_0886 PF00456 Transketolase, thiamine diphosphate binding domain TMO_0886 PF02780 Transketolase, C-terminal domain TMO_0886 PF02779 Transketolase, pyrimidine binding domain TMO_0887 PF01235 Sodium:alanine symporter family TMO_0888 PF10415 Fumarase C C-terminus TMO_0888 PF00206 Lyase TMO_0889 PF17763 Glutaminase/Asparaginase C-terminal domain TMO_0889 PF00710 Asparaginase, N-terminal TMO_0894 PF01812 5-formyltetrahydrofolate cyclo-ligase family TMO_0896 PF13277 YmdB-like protein TMO_0897 PF01709 Transcriptional regulator TMO_0898 PF02075 Crossover junction endodeoxyribonuclease RuvC TMO_0899 PF01330 RuvA N terminal domain TMO_0899 PF07499 RuvA, C-terminal domain TMO_0900 PF17864 RuvB AAA lid domain TMO_0900 PF05491 RuvB C-terminal winged helix domain TMO_0900 PF05496 Holliday junction DNA helicase RuvB P-loop domain TMO_0901 PF03061 Thioesterase superfamily TMO_0902 PF01425 Amidase TMO_0903 PF01618 MotA/TolQ/ExbB proton channel family TMO_0904 PF02472 Biopolymer transport protein ExbD/TolR TMO_0907 PF04052 TolB amino-terminal domain TMO_0907 PF07676 WD40-like Beta Propeller Repeat TMO_0908 PF00691 OmpA family TMO_0910 PF01171 PP-loop family TMO_0911 PF00004 ATPase family associated with various cellular activities (AAA) TMO_0911 PF17862 AAA+ lid domain TMO_0911 PF06480 FtsH Extracellular TMO_0911 PF01434 Peptidase family M41 TMO_0912 PF00809 Pterin binding enzyme TMO_0913 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TMO_0913 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TMO_0913 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TMO_0913 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TMO_0915 PF08543 Phosphomethylpyrimidine kinase TMO_0917 PF00563 EAL domain TMO_0917 PF00990 Diguanylate cyclase, GGDEF domain TMO_0917 PF03707 Bacterial signalling protein N terminal repeat TMO_0918 PF00266 Aminotransferase class-V TMO_0919 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TMO_0919 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TMO_0919 PF01842 ACT domain TMO_0920 PF13393 Histidyl-tRNA synthetase TMO_0921 PF00709 Adenylosuccinate synthetase TMO_0924 PF00005 ABC transporter TMO_0925 PF00005 ABC transporter TMO_0927 PF02653 Branched-chain amino acid transport system / permease component TMO_0929 PF09856 Predicted transcriptional regulator (DUF2083) TMO_0929 PF06114 IrrE N-terminal-like domain TMO_0929 PF01381 Helix-turn-helix TMO_0930 PF00072 Response regulator receiver domain TMO_0930 PF00486 Transcriptional regulatory protein, C terminal TMO_0932 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0932 PF18698 Histidine kinase sensor domain TMO_0932 PF00512 His Kinase A (phospho-acceptor) domain TMO_0932 PF00672 HAMP domain TMO_0932 PF00989 PAS fold TMO_0934 PF04545 Sigma-70, region 4 TMO_0934 PF04542 Sigma-70 region 2 TMO_0934 PF00140 Sigma-70 factor, region 1.2 TMO_0935 PF00849 RNA pseudouridylate synthase TMO_0938 PF05958 tRNA (Uracil-5-)-methyltransferase TMO_0939 PF01212 Beta-eliminating lyase TMO_0940 PF13193 AMP-binding enzyme C-terminal domain TMO_0940 PF00501 AMP-binding enzyme TMO_0943 PF01118 Semialdehyde dehydrogenase, NAD binding domain TMO_0944 PF01381 Helix-turn-helix TMO_0944 PF07883 Cupin domain TMO_0945 PF00202 Aminotransferase class-III TMO_0946 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TMO_0946 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TMO_0948 PF07690 Major Facilitator Superfamily TMO_0949 PF00989 PAS fold TMO_0949 PF13188 PAS domain TMO_0949 PF00512 His Kinase A (phospho-acceptor) domain TMO_0949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0950 PF01266 FAD dependent oxidoreductase TMO_0951 PF04241 Protein of unknown function (DUF423) TMO_0953 PF01434 Peptidase family M41 TMO_0953 PF17862 AAA+ lid domain TMO_0953 PF00004 ATPase family associated with various cellular activities (AAA) TMO_0956 PF02687 FtsX-like permease family TMO_0956 PF00005 ABC transporter TMO_0956 PF12704 MacB-like periplasmic core domain TMO_0957 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_0958 PF03976 Polyphosphate kinase 2 (PPK2) TMO_0960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_0960 PF00529 HlyD membrane-fusion protein of T1SS TMO_0961 PF00005 ABC transporter TMO_0961 PF00664 ABC transporter transmembrane region TMO_0963 PF00850 Histone deacetylase domain TMO_0964 PF02609 Exonuclease VII small subunit TMO_0965 PF00348 Polyprenyl synthetase TMO_0966 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TMO_0966 PF02780 Transketolase, C-terminal domain TMO_0966 PF02779 Transketolase, pyrimidine binding domain TMO_0967 PF01479 S4 domain TMO_0967 PF01728 FtsJ-like methyltransferase TMO_0968 PF00027 Cyclic nucleotide-binding domain TMO_0968 PF00325 Bacterial regulatory proteins, crp family TMO_0971 PF00581 Rhodanese-like domain TMO_0973 PF13193 AMP-binding enzyme C-terminal domain TMO_0973 PF00501 AMP-binding enzyme TMO_0974 PF00440 Bacterial regulatory proteins, tetR family TMO_0975 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TMO_0975 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TMO_0976 PF13452 N-terminal half of MaoC dehydratase TMO_0979 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_0979 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_0979 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_0980 PF01381 Helix-turn-helix TMO_0981 PF02567 Phenazine biosynthesis-like protein TMO_0983 PF01264 Chorismate synthase TMO_0985 PF03631 Virulence factor BrkB TMO_0986 PF01556 DnaJ C terminal domain TMO_0986 PF00226 DnaJ domain TMO_0987 PF05433 Glycine zipper 2TM domain TMO_0987 PF16998 17 kDa outer membrane surface antigen TMO_0988 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region TMO_0988 PF01243 Pyridoxamine 5'-phosphate oxidase TMO_0989 PF16916 Dimerisation domain of Zinc Transporter TMO_0989 PF01545 Cation efflux family TMO_0990 PF00156 Phosphoribosyl transferase domain TMO_0991 PF03352 Methyladenine glycosylase TMO_0994 PF00534 Glycosyl transferases group 1 TMO_0994 PF13439 Glycosyltransferase Family 4 TMO_0995 PF13439 Glycosyltransferase Family 4 TMO_0995 PF00534 Glycosyl transferases group 1 TMO_0996 PF13537 Glutamine amidotransferase domain TMO_0996 PF00733 Asparagine synthase TMO_0997 PF06674 Protein of unknown function (DUF1176) TMO_0998 PF00989 PAS fold TMO_0998 PF00512 His Kinase A (phospho-acceptor) domain TMO_0998 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_0999 PF00692 dUTPase TMO_1000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TMO_1001 PF01634 ATP phosphoribosyltransferase TMO_1002 PF00815 Histidinol dehydrogenase TMO_1003 PF06793 Uncharacterised protein family (UPF0262) TMO_1004 PF01451 Low molecular weight phosphotyrosine protein phosphatase TMO_1005 PF01176 Translation initiation factor 1A / IF-1 TMO_1006 PF02545 Maf-like protein TMO_1007 PF00575 S1 RNA binding domain TMO_1007 PF10150 Ribonuclease E/G family TMO_1008 PF03884 DNA gyrase inhibitor YacG TMO_1015 PF03180 NLPA lipoprotein TMO_1016 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_1017 PF08502 LeuA allosteric (dimerisation) domain TMO_1017 PF00682 HMGL-like TMO_1018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1018 PF03466 LysR substrate binding domain TMO_1020 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TMO_1020 PF00037 4Fe-4S binding domain TMO_1020 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TMO_1021 PF12838 4Fe-4S dicluster domain TMO_1021 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TMO_1021 PF01568 Molydopterin dinucleotide binding domain TMO_1021 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TMO_1021 PF00384 Molybdopterin oxidoreductase TMO_1022 PF02634 FdhD/NarQ family TMO_1025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_1025 PF00005 ABC transporter TMO_1026 PF00171 Aldehyde dehydrogenase family TMO_1027 PF01266 FAD dependent oxidoreductase TMO_1029 PF01266 FAD dependent oxidoreductase TMO_1031 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1032 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1032 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_1033 PF03466 LysR substrate binding domain TMO_1033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1041 PF08281 Sigma-70, region 4 TMO_1041 PF04542 Sigma-70 region 2 TMO_1043 PF00248 Aldo/keto reductase family TMO_1044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1044 PF03466 LysR substrate binding domain TMO_1045 PF00593 TonB dependent receptor TMO_1045 PF07715 TonB-dependent Receptor Plug Domain TMO_1047 PF01613 Flavin reductase like domain TMO_1057 PF05114 Protein of unknown function (DUF692) TMO_1058 PF01810 LysE type translocator TMO_1062 PF02872 5'-nucleotidase, C-terminal domain TMO_1062 PF00149 Calcineurin-like phosphoesterase TMO_1065 PF00005 ABC transporter TMO_1065 PF00664 ABC transporter transmembrane region TMO_1065 PF03412 Peptidase C39 family TMO_1066 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_1066 PF00529 HlyD membrane-fusion protein of T1SS TMO_1068 PF00989 PAS fold TMO_1068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1068 PF00512 His Kinase A (phospho-acceptor) domain TMO_1069 PF00171 Aldehyde dehydrogenase family TMO_1074 PF02561 Flagellar protein FliS TMO_1075 PF07195 Flagellar hook-associated protein 2 C-terminus TMO_1075 PF07196 Flagellin hook IN motif TMO_1075 PF02465 Flagellar hook-associated protein 2 N-terminus TMO_1077 PF00700 Bacterial flagellin C-terminal helical region TMO_1077 PF00669 Bacterial flagellin N-terminal helical region TMO_1078 PF00669 Bacterial flagellin N-terminal helical region TMO_1078 PF00700 Bacterial flagellin C-terminal helical region TMO_1082 PF01270 Glycosyl hydrolases family 8 TMO_1083 PF03170 Bacterial cellulose synthase subunit TMO_1084 PF00535 Glycosyl transferase family 2 TMO_1084 PF03552 Cellulose synthase TMO_1084 PF07238 PilZ domain TMO_1086 PF02623 FliW protein TMO_1088 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TMO_1088 PF07196 Flagellin hook IN motif TMO_1091 PF02119 Flagellar P-ring protein TMO_1092 PF10768 Class II flagellar assembly regulator TMO_1093 PF01258 Prokaryotic dksA/traR C4-type zinc finger TMO_1094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1094 PF00989 PAS fold TMO_1094 PF00512 His Kinase A (phospho-acceptor) domain TMO_1095 PF02107 Flagellar L-ring protein TMO_1097 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TMO_1097 PF00460 Flagella basal body rod protein TMO_1098 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TMO_1098 PF00460 Flagella basal body rod protein TMO_1100 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TMO_1100 PF02154 Flagellar motor switch protein FliM TMO_1103 PF00072 Response regulator receiver domain TMO_1106 PF13677 Membrane MotB of proton-channel complex MotA/MotB TMO_1106 PF00691 OmpA family TMO_1108 PF17785 PUA-like domain TMO_1108 PF10672 S-adenosylmethionine-dependent methyltransferase TMO_1109 PF00588 SpoU rRNA Methylase family TMO_1111 PF16925 Tetracyclin repressor-like, C-terminal domain TMO_1111 PF00440 Bacterial regulatory proteins, tetR family TMO_1115 PF03466 LysR substrate binding domain TMO_1115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1116 PF00813 FliP family TMO_1120 PF02599 Global regulator protein family TMO_1122 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TMO_1123 PF02049 Flagellar hook-basal body complex protein FliE TMO_1124 PF01313 Bacterial export proteins, family 3 TMO_1125 PF01311 Bacterial export proteins, family 1 TMO_1126 PF01312 FlhB HrpN YscU SpaS Family TMO_1127 PF13188 PAS domain TMO_1127 PF00072 Response regulator receiver domain TMO_1127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1127 PF08448 PAS fold TMO_1127 PF00512 His Kinase A (phospho-acceptor) domain TMO_1129 PF00154 recA bacterial DNA recombination protein TMO_1130 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TMO_1130 PF01411 tRNA synthetases class II (A) TMO_1130 PF02272 DHHA1 domain TMO_1133 PF00583 Acetyltransferase (GNAT) family TMO_1133 PF13673 Acetyltransferase (GNAT) domain TMO_1134 PF07683 Cobalamin synthesis protein cobW C-terminal domain TMO_1134 PF02492 CobW/HypB/UreG, nucleotide-binding domain TMO_1135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_1135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_1136 PF00180 Isocitrate/isopropylmalate dehydrogenase TMO_1139 PF00083 Sugar (and other) transporter TMO_1142 PF00440 Bacterial regulatory proteins, tetR family TMO_1142 PF17922 Tetracyclin repressor-like, C-terminal domain TMO_1144 PF00043 Glutathione S-transferase, C-terminal domain TMO_1144 PF02798 Glutathione S-transferase, N-terminal domain TMO_1145 PF02798 Glutathione S-transferase, N-terminal domain TMO_1145 PF00043 Glutathione S-transferase, C-terminal domain TMO_1146 PF02653 Branched-chain amino acid transport system / permease component TMO_1147 PF00005 ABC transporter TMO_1148 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family TMO_1149 PF02626 Carboxyltransferase domain, subdomain A and B TMO_1151 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_1151 PF00289 Biotin carboxylase, N-terminal domain TMO_1151 PF02785 Biotin carboxylase C-terminal domain TMO_1152 PF00364 Biotin-requiring enzyme TMO_1153 PF03746 LamB/YcsF family TMO_1154 PF03466 LysR substrate binding domain TMO_1154 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1156 PF01965 DJ-1/PfpI family TMO_1158 PF01066 CDP-alcohol phosphatidyltransferase TMO_1160 PF08220 DeoR-like helix-turn-helix domain TMO_1160 PF00455 DeoR C terminal sensor domain TMO_1162 PF01638 HxlR-like helix-turn-helix TMO_1163 PF00873 AcrB/AcrD/AcrF family TMO_1166 PF16363 GDP-mannose 4,6 dehydratase TMO_1168 PF01209 ubiE/COQ5 methyltransferase family TMO_1169 PF12804 MobA-like NTP transferase domain TMO_1169 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_1170 PF13478 XdhC Rossmann domain TMO_1170 PF02625 XdhC and CoxI family TMO_1174 PF00941 FAD binding domain in molybdopterin dehydrogenase TMO_1174 PF03450 CO dehydrogenase flavoprotein C-terminal domain TMO_1175 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TMO_1175 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TMO_1176 PF01799 [2Fe-2S] binding domain TMO_1176 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_1177 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TMO_1180 PF00072 Response regulator receiver domain TMO_1180 PF00196 Bacterial regulatory proteins, luxR family TMO_1181 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_1181 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1182 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1183 PF00005 ABC transporter TMO_1183 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_1184 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_1184 PF00005 ABC transporter TMO_1185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_1190 PF00857 Isochorismatase family TMO_1192 PF00857 Isochorismatase family TMO_1197 PF01425 Amidase TMO_1199 PF12804 MobA-like NTP transferase domain TMO_1200 PF00893 Small Multidrug Resistance protein TMO_1204 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_1206 PF13193 AMP-binding enzyme C-terminal domain TMO_1206 PF00501 AMP-binding enzyme TMO_1208 PF03591 AzlC protein TMO_1210 PF01433 Peptidase family M1 domain TMO_1210 PF11940 Domain of unknown function (DUF3458) Ig-like fold TMO_1210 PF17432 Domain of unknown function (DUF3458_C) ARM repeats TMO_1211 PF00144 Beta-lactamase TMO_1213 PF12833 Helix-turn-helix domain TMO_1214 PF00672 HAMP domain TMO_1214 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_1214 PF17200 Single Cache domain 2 TMO_1215 PF02698 DUF218 domain TMO_1216 PF00990 Diguanylate cyclase, GGDEF domain TMO_1216 PF00072 Response regulator receiver domain TMO_1218 PF01513 ATP-NAD kinase TMO_1219 PF04055 Radical SAM superfamily TMO_1219 PF06463 Molybdenum Cofactor Synthesis C TMO_1223 PF02895 Signal transducing histidine kinase, homodimeric domain TMO_1223 PF01584 CheW-like domain TMO_1223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1223 PF01627 Hpt domain TMO_1223 PF07194 P2 response regulator binding domain TMO_1225 PF01339 CheB methylesterase TMO_1225 PF00072 Response regulator receiver domain TMO_1226 PF01339 CheB methylesterase TMO_1226 PF00072 Response regulator receiver domain TMO_1227 PF01739 CheR methyltransferase, SAM binding domain TMO_1227 PF03705 CheR methyltransferase, all-alpha domain TMO_1228 PF00486 Transcriptional regulatory protein, C terminal TMO_1228 PF00072 Response regulator receiver domain TMO_1229 PF18269 T3SS EscN ATPase C-terminal domain TMO_1229 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TMO_1229 PF02874 ATP synthase alpha/beta family, beta-barrel domain TMO_1232 PF00005 ABC transporter TMO_1234 PF07690 Major Facilitator Superfamily TMO_1238 PF10609 NUBPL iron-transfer P-loop NTPase TMO_1239 PF00448 SRP54-type protein, GTPase domain TMO_1240 PF00771 FHIPEP family TMO_1241 PF00158 Sigma-54 interaction domain TMO_1241 PF02954 Bacterial regulatory protein, Fis family TMO_1242 PF01618 MotA/TolQ/ExbB proton channel family TMO_1243 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TMO_1245 PF14841 FliG middle domain TMO_1245 PF01706 FliG C-terminal domain TMO_1245 PF14842 FliG N-terminal domain TMO_1246 PF08345 Flagellar M-ring protein C-terminal TMO_1246 PF01514 Secretory protein of YscJ/FliF family TMO_1248 PF07559 Flagellar basal body protein FlaE TMO_1248 PF00460 Flagella basal body rod protein TMO_1248 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TMO_1249 PF03963 Flagellar hook capping protein - N-terminal region TMO_1249 PF13861 FlgD Tudor-like domain TMO_1249 PF13860 FlgD Ig-like domain TMO_1251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1251 PF00989 PAS fold TMO_1251 PF00512 His Kinase A (phospho-acceptor) domain TMO_1253 PF13193 AMP-binding enzyme C-terminal domain TMO_1253 PF00501 AMP-binding enzyme TMO_1254 PF00563 EAL domain TMO_1254 PF00360 Phytochrome region TMO_1254 PF00990 Diguanylate cyclase, GGDEF domain TMO_1254 PF01590 GAF domain TMO_1255 PF03466 LysR substrate binding domain TMO_1255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1256 PF03150 Di-haem cytochrome c peroxidase TMO_1256 PF00034 Cytochrome c TMO_1257 PF15887 Putative zinc-binding metallo-peptidase TMO_1257 PF10005 zinc-ribbon domain TMO_1258 PF00117 Glutamine amidotransferase class-I TMO_1258 PF04715 Anthranilate synthase component I, N terminal region TMO_1258 PF00425 chorismate binding enzyme TMO_1262 PF00753 Metallo-beta-lactamase superfamily TMO_1264 PF01740 STAS domain TMO_1264 PF00916 Sulfate permease family TMO_1265 PF13229 Right handed beta helix region TMO_1265 PF12708 Pectate lyase superfamily protein TMO_1265 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) TMO_1268 PF04055 Radical SAM superfamily TMO_1270 PF13426 PAS domain TMO_1270 PF08447 PAS fold TMO_1270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_1271 PF07286 Protein of unknown function (DUF1445) TMO_1272 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_1274 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_1276 PF01425 Amidase TMO_1278 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TMO_1280 PF00005 ABC transporter TMO_1281 PF00950 ABC 3 transport family TMO_1282 PF01297 Zinc-uptake complex component A periplasmic TMO_1285 PF00378 Enoyl-CoA hydratase/isomerase TMO_1286 PF13193 AMP-binding enzyme C-terminal domain TMO_1286 PF00501 AMP-binding enzyme TMO_1287 PF00106 short chain dehydrogenase TMO_1288 PF00440 Bacterial regulatory proteins, tetR family TMO_1290 PF00005 ABC transporter TMO_1291 PF02653 Branched-chain amino acid transport system / permease component TMO_1292 PF04198 Putative sugar-binding domain TMO_1293 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TMO_1293 PF01266 FAD dependent oxidoreductase TMO_1295 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TMO_1295 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TMO_1302 PF07715 TonB-dependent Receptor Plug Domain TMO_1302 PF00593 TonB dependent receptor TMO_1306 PF00892 EamA-like transporter family TMO_1312 PF07715 TonB-dependent Receptor Plug Domain TMO_1312 PF00593 TonB dependent receptor TMO_1317 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1318 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1319 PF13416 Bacterial extracellular solute-binding protein TMO_1320 PF17912 MalK OB fold domain TMO_1320 PF00005 ABC transporter TMO_1321 PF00455 DeoR C terminal sensor domain TMO_1321 PF08220 DeoR-like helix-turn-helix domain TMO_1323 PF05922 Peptidase inhibitor I9 TMO_1323 PF00082 Subtilase family TMO_1325 PF07683 Cobalamin synthesis protein cobW C-terminal domain TMO_1325 PF02492 CobW/HypB/UreG, nucleotide-binding domain TMO_1329 PF01037 Lrp/AsnC ligand binding domain TMO_1330 PF00593 TonB dependent receptor TMO_1330 PF07715 TonB-dependent Receptor Plug Domain TMO_1333 PF01497 Periplasmic binding protein TMO_1334 PF01032 FecCD transport family TMO_1335 PF00005 ABC transporter TMO_1336 PF00067 Cytochrome P450 TMO_1337 PF01741 Large-conductance mechanosensitive channel, MscL TMO_1339 PF13505 Outer membrane protein beta-barrel domain TMO_1341 PF01618 MotA/TolQ/ExbB proton channel family TMO_1345 PF03552 Cellulose synthase TMO_1345 PF00535 Glycosyl transferase family 2 TMO_1345 PF07238 PilZ domain TMO_1347 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) TMO_1348 PF01380 SIS domain TMO_1348 PF01418 Helix-turn-helix domain, rpiR family TMO_1348 PF02685 Glucokinase TMO_1349 PF04371 Porphyromonas-type peptidyl-arginine deiminase TMO_1350 PF02678 Pirin TMO_1350 PF05726 Pirin C-terminal cupin domain TMO_1351 PF01321 Creatinase/Prolidase N-terminal domain TMO_1351 PF00557 Metallopeptidase family M24 TMO_1356 PF00155 Aminotransferase class I and II TMO_1357 PF07685 CobB/CobQ-like glutamine amidotransferase domain TMO_1358 PF07715 TonB-dependent Receptor Plug Domain TMO_1358 PF00593 TonB dependent receptor TMO_1361 PF08482 ATP-dependent helicase C-terminal TMO_1361 PF00270 DEAD/DEAH box helicase TMO_1361 PF04408 Helicase associated domain (HA2) TMO_1361 PF00271 Helicase conserved C-terminal domain TMO_1363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1363 PF03466 LysR substrate binding domain TMO_1364 PF01425 Amidase TMO_1370 PF13419 Haloacid dehalogenase-like hydrolase TMO_1371 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TMO_1371 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TMO_1372 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_1372 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_1372 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_1373 PF00171 Aldehyde dehydrogenase family TMO_1374 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1376 PF01773 Na+ dependent nucleoside transporter N-terminus TMO_1376 PF07662 Na+ dependent nucleoside transporter C-terminus TMO_1379 PF00106 short chain dehydrogenase TMO_1381 PF13193 AMP-binding enzyme C-terminal domain TMO_1381 PF00501 AMP-binding enzyme TMO_1382 PF00440 Bacterial regulatory proteins, tetR family TMO_1384 PF00873 AcrB/AcrD/AcrF family TMO_1385 PF01297 Zinc-uptake complex component A periplasmic TMO_1386 PF01475 Ferric uptake regulator family TMO_1387 PF00005 ABC transporter TMO_1388 PF00950 ABC 3 transport family TMO_1390 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1391 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1392 PF00005 ABC transporter TMO_1392 PF08402 TOBE domain TMO_1397 PF06750 Bacterial Peptidase A24 N-terminal domain TMO_1397 PF01478 Type IV leader peptidase family TMO_1400 PF00005 ABC transporter TMO_1401 PF02405 Permease MlaE TMO_1402 PF00501 AMP-binding enzyme TMO_1402 PF13193 AMP-binding enzyme C-terminal domain TMO_1403 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_1403 PF00378 Enoyl-CoA hydratase/isomerase TMO_1403 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_1404 PF07729 FCD domain TMO_1404 PF00392 Bacterial regulatory proteins, gntR family TMO_1406 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_1407 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_1408 PF02515 CoA-transferase family III TMO_1409 PF00378 Enoyl-CoA hydratase/isomerase TMO_1410 PF07859 alpha/beta hydrolase fold TMO_1412 PF01425 Amidase TMO_1415 PF00248 Aldo/keto reductase family TMO_1416 PF00881 Nitroreductase family TMO_1417 PF00563 EAL domain TMO_1417 PF03707 Bacterial signalling protein N terminal repeat TMO_1417 PF00990 Diguanylate cyclase, GGDEF domain TMO_1418 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_1419 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1420 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_1420 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1421 PF00005 ABC transporter TMO_1421 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_1422 PF00384 Molybdopterin oxidoreductase TMO_1422 PF01568 Molydopterin dinucleotide binding domain TMO_1424 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TMO_1424 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_1428 PF08882 Acetone carboxylase gamma subunit TMO_1429 PF02538 Hydantoinase B/oxoprolinase TMO_1430 PF05378 Hydantoinase/oxoprolinase N-terminal region TMO_1430 PF01968 Hydantoinase/oxoprolinase TMO_1431 PF01590 GAF domain TMO_1431 PF02954 Bacterial regulatory protein, Fis family TMO_1431 PF00158 Sigma-54 interaction domain TMO_1434 PF00501 AMP-binding enzyme TMO_1434 PF13193 AMP-binding enzyme C-terminal domain TMO_1435 PF00975 Thioesterase domain TMO_1436 PF02541 Ppx/GppA phosphatase family TMO_1437 PF01728 FtsJ-like methyltransferase TMO_1438 PF00478 IMP dehydrogenase / GMP reductase domain TMO_1438 PF00571 CBS domain TMO_1439 PF01189 16S rRNA methyltransferase RsmB/F TMO_1439 PF01029 NusB family TMO_1441 PF02308 MgtC family TMO_1443 PF12697 Alpha/beta hydrolase family TMO_1444 PF00892 EamA-like transporter family TMO_1445 PF00958 GMP synthase C terminal domain TMO_1445 PF00117 Glutamine amidotransferase class-I TMO_1445 PF02540 NAD synthase TMO_1447 PF07993 Male sterility protein TMO_1447 PF00550 Phosphopantetheine attachment site TMO_1448 PF00248 Aldo/keto reductase family TMO_1449 PF03466 LysR substrate binding domain TMO_1449 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1450 PF00005 ABC transporter TMO_1450 PF00664 ABC transporter transmembrane region TMO_1451 PF00005 ABC transporter TMO_1451 PF03412 Peptidase C39 family TMO_1451 PF00664 ABC transporter transmembrane region TMO_1454 PF04945 YHS domain TMO_1456 PF01161 Phosphatidylethanolamine-binding protein TMO_1460 PF09370 Phosphoenolpyruvate hydrolase-like TMO_1462 PF17754 MftR C-terminal domain TMO_1462 PF00440 Bacterial regulatory proteins, tetR family TMO_1463 PF03033 Glycosyltransferase family 28 N-terminal domain TMO_1466 PF01011 PQQ enzyme repeat TMO_1467 PF00999 Sodium/hydrogen exchanger family TMO_1470 PF13247 4Fe-4S dicluster domain TMO_1470 PF00037 4Fe-4S binding domain TMO_1478 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TMO_1478 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TMO_1479 PF00115 Cytochrome C and Quinol oxidase polypeptide I TMO_1480 PF00510 Cytochrome c oxidase subunit III TMO_1483 PF01925 Sulfite exporter TauE/SafE TMO_1485 PF00578 AhpC/TSA family TMO_1485 PF10417 C-terminal domain of 1-Cys peroxiredoxin TMO_1486 PF01037 Lrp/AsnC ligand binding domain TMO_1492 PF08240 Alcohol dehydrogenase GroES-like domain TMO_1492 PF00107 Zinc-binding dehydrogenase TMO_1493 PF16925 Tetracyclin repressor-like, C-terminal domain TMO_1493 PF00440 Bacterial regulatory proteins, tetR family TMO_1494 PF03466 LysR substrate binding domain TMO_1494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1498 PF13443 Cro/C1-type HTH DNA-binding domain TMO_1499 PF00043 Glutathione S-transferase, C-terminal domain TMO_1499 PF02798 Glutathione S-transferase, N-terminal domain TMO_1501 PF01609 Transposase DDE domain TMO_1501 PF13808 DDE_Tnp_1-associated TMO_1502 PF17862 AAA+ lid domain TMO_1502 PF00004 ATPase family associated with various cellular activities (AAA) TMO_1502 PF01434 Peptidase family M41 TMO_1502 PF06480 FtsH Extracellular TMO_1503 PF08240 Alcohol dehydrogenase GroES-like domain TMO_1504 PF00920 Dehydratase family TMO_1506 PF01521 Iron-sulphur cluster biosynthesis TMO_1507 PF01966 HD domain TMO_1507 PF13286 Phosphohydrolase-associated domain TMO_1508 PF03485 Arginyl tRNA synthetase N terminal domain TMO_1508 PF05746 DALR anticodon binding domain TMO_1508 PF00750 tRNA synthetases class I (R) TMO_1510 PF00933 Glycosyl hydrolase family 3 N terminal domain TMO_1511 PF02616 Segregation and condensation protein ScpA TMO_1512 PF04079 Segregation and condensation complex subunit ScpB TMO_1514 PF00664 ABC transporter transmembrane region TMO_1514 PF00005 ABC transporter TMO_1514 PF03412 Peptidase C39 family TMO_1515 PF03412 Peptidase C39 family TMO_1515 PF00664 ABC transporter transmembrane region TMO_1515 PF00005 ABC transporter TMO_1520 PF00486 Transcriptional regulatory protein, C terminal TMO_1520 PF00072 Response regulator receiver domain TMO_1522 PF01679 Proteolipid membrane potential modulator TMO_1524 PF01841 Transglutaminase-like superfamily TMO_1524 PF08379 Bacterial transglutaminase-like N-terminal region TMO_1526 PF14403 Circularly permuted ATP-grasp type 2 TMO_1527 PF13581 Histidine kinase-like ATPase domain TMO_1528 PF01740 STAS domain TMO_1530 PF03471 Transporter associated domain TMO_1530 PF03741 Integral membrane protein TerC family TMO_1531 PF00571 CBS domain TMO_1531 PF03471 Transporter associated domain TMO_1531 PF01595 Cyclin M transmembrane N-terminal domain TMO_1533 PF13416 Bacterial extracellular solute-binding protein TMO_1534 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1535 PF00005 ABC transporter TMO_1535 PF08402 TOBE domain TMO_1536 PF02416 mttA/Hcf106 family TMO_1537 PF02416 mttA/Hcf106 family TMO_1538 PF00902 Sec-independent protein translocase protein (TatC) TMO_1539 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TMO_1539 PF02403 Seryl-tRNA synthetase N-terminal domain TMO_1540 PF01975 Survival protein SurE TMO_1542 PF01476 LysM domain TMO_1542 PF01551 Peptidase family M23 TMO_1543 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_1543 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_1546 PF02699 Preprotein translocase subunit TMO_1547 PF02355 Protein export membrane protein TMO_1548 PF07549 SecD/SecF GG Motif TMO_1548 PF02355 Protein export membrane protein TMO_1550 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TMO_1550 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TMO_1551 PF01593 Flavin containing amine oxidoreductase TMO_1554 PF01134 Glucose inhibited division protein A TMO_1556 PF17755 UvrA DNA-binding domain TMO_1556 PF17760 UvrA interaction domain TMO_1557 PF00672 HAMP domain TMO_1557 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_1559 PF01546 Peptidase family M20/M25/M40 TMO_1559 PF07687 Peptidase dimerisation domain TMO_1561 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1562 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1566 PF00436 Single-strand binding protein family TMO_1568 PF01047 MarR family TMO_1569 PF02566 OsmC-like protein TMO_1570 PF00521 DNA gyrase/topoisomerase IV, subunit A TMO_1570 PF03989 DNA gyrase C-terminal domain, beta-propeller TMO_1571 PF01467 Cytidylyltransferase-like TMO_1572 PF02547 Queuosine biosynthesis protein TMO_1573 PF01702 Queuine tRNA-ribosyltransferase TMO_1574 PF00501 AMP-binding enzyme TMO_1574 PF13193 AMP-binding enzyme C-terminal domain TMO_1578 PF00171 Aldehyde dehydrogenase family TMO_1579 PF01261 Xylose isomerase-like TIM barrel TMO_1581 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TMO_1581 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TMO_1582 PF13419 Haloacid dehalogenase-like hydrolase TMO_1583 PF01464 Transglycosylase SLT domain TMO_1584 PF00701 Dihydrodipicolinate synthetase family TMO_1585 PF01668 SmpB protein TMO_1586 PF00174 Oxidoreductase molybdopterin binding domain TMO_1587 PF03167 Uracil DNA glycosylase superfamily TMO_1589 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TMO_1590 PF01192 RNA polymerase Rpb6 TMO_1591 PF02824 TGS domain TMO_1591 PF04607 Region found in RelA / SpoT proteins TMO_1591 PF13291 ACT domain TMO_1592 PF00156 Phosphoribosyl transferase domain TMO_1593 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TMO_1594 PF01648 4'-phosphopantetheinyl transferase superfamily TMO_1595 PF10502 Signal peptidase, peptidase S26 TMO_1596 PF00035 Double-stranded RNA binding motif TMO_1596 PF14622 Ribonuclease-III-like TMO_1597 PF01926 50S ribosome-binding GTPase TMO_1597 PF07650 KH domain TMO_1602 PF03466 LysR substrate binding domain TMO_1602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1603 PF02565 Recombination protein O C terminal TMO_1603 PF11967 Recombination protein O N terminal TMO_1604 PF00521 DNA gyrase/topoisomerase IV, subunit A TMO_1604 PF03989 DNA gyrase C-terminal domain, beta-propeller TMO_1605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_1608 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_1609 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_1610 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_1611 PF04377 Arginine-tRNA-protein transferase, C terminus TMO_1611 PF04376 Arginine-tRNA-protein transferase, N terminus TMO_1612 PF13291 ACT domain TMO_1612 PF00291 Pyridoxal-phosphate dependent enzyme TMO_1613 PF01804 Penicillin amidase TMO_1616 PF00490 Delta-aminolevulinic acid dehydratase TMO_1617 PF00378 Enoyl-CoA hydratase/isomerase TMO_1618 PF12802 MarR family TMO_1619 PF17284 Spermidine synthase tetramerisation domain TMO_1620 PF02675 S-adenosylmethionine decarboxylase TMO_1621 PF00561 alpha/beta hydrolase fold TMO_1624 PF14760 Rnk N-terminus TMO_1624 PF01272 Transcription elongation factor, GreA/GreB, C-term TMO_1625 PF00271 Helicase conserved C-terminal domain TMO_1625 PF00270 DEAD/DEAH box helicase TMO_1625 PF17191 RecG wedge domain TMO_1627 PF17757 UvrB interaction domain TMO_1627 PF03461 TRCF domain TMO_1627 PF02559 CarD-like/TRCF domain TMO_1627 PF00270 DEAD/DEAH box helicase TMO_1627 PF00271 Helicase conserved C-terminal domain TMO_1630 PF00072 Response regulator receiver domain TMO_1630 PF00486 Transcriptional regulatory protein, C terminal TMO_1631 PF13193 AMP-binding enzyme C-terminal domain TMO_1631 PF00501 AMP-binding enzyme TMO_1632 PF00672 HAMP domain TMO_1632 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_1632 PF17200 Single Cache domain 2 TMO_1633 PF12105 SpoU, rRNA methylase, C-terminal TMO_1633 PF00588 SpoU rRNA Methylase family TMO_1634 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_1634 PF12729 Four helix bundle sensory module for signal transduction TMO_1634 PF00672 HAMP domain TMO_1636 PF13439 Glycosyltransferase Family 4 TMO_1636 PF00534 Glycosyl transferases group 1 TMO_1638 PF00313 'Cold-shock' DNA-binding domain TMO_1639 PF00313 'Cold-shock' DNA-binding domain TMO_1643 PF00005 ABC transporter TMO_1644 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_1644 PF00005 ABC transporter TMO_1646 PF02653 Branched-chain amino acid transport system / permease component TMO_1648 PF00330 Aconitase family (aconitate hydratase) TMO_1649 PF02874 ATP synthase alpha/beta family, beta-barrel domain TMO_1649 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TMO_1650 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TMO_1653 PF00119 ATP synthase A chain TMO_1654 PF00137 ATP synthase subunit C TMO_1655 PF00430 ATP synthase B/B' CF(0) TMO_1656 PF02874 ATP synthase alpha/beta family, beta-barrel domain TMO_1656 PF00306 ATP synthase alpha/beta chain, C terminal domain TMO_1656 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TMO_1657 PF00231 ATP synthase TMO_1659 PF07690 Major Facilitator Superfamily TMO_1662 PF00391 PEP-utilising enzyme, mobile domain TMO_1662 PF02896 PEP-utilising enzyme, TIM barrel domain TMO_1662 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TMO_1663 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1664 PF00005 ABC transporter TMO_1665 PF00528 Binding-protein-dependent transport system inner membrane component TMO_1666 PF04069 Substrate binding domain of ABC-type glycine betaine transport system TMO_1668 PF00990 Diguanylate cyclase, GGDEF domain TMO_1669 PF07859 alpha/beta hydrolase fold TMO_1672 PF00872 Transposase, Mutator family TMO_1674 PF13406 Transglycosylase SLT domain TMO_1675 PF03330 Lytic transglycolase TMO_1675 PF05036 Sporulation related domain TMO_1676 PF00768 D-alanyl-D-alanine carboxypeptidase TMO_1676 PF07943 Penicillin-binding protein 5, C-terminal domain TMO_1677 PF02223 Thymidylate kinase TMO_1678 PF09115 DNA polymerase III, delta subunit, C terminal TMO_1679 PF09334 tRNA synthetases class I (M) TMO_1680 PF01026 TatD related DNase TMO_1681 PF12706 Beta-lactamase superfamily domain TMO_1681 PF03099 Biotin/lipoate A/B protein ligase family TMO_1684 PF07690 Major Facilitator Superfamily TMO_1686 PF08281 Sigma-70, region 4 TMO_1686 PF04542 Sigma-70 region 2 TMO_1688 PF01027 Inhibitor of apoptosis-promoting Bax1 TMO_1691 PF03796 DnaB-like helicase C terminal domain TMO_1691 PF14528 LAGLIDADG-like domain TMO_1691 PF00772 DnaB-like helicase N terminal domain TMO_1692 PF00296 Luciferase-like monooxygenase TMO_1693 PF03819 MazG nucleotide pyrophosphohydrolase domain TMO_1694 PF00106 short chain dehydrogenase TMO_1695 PF00106 short chain dehydrogenase TMO_1696 PF00118 TCP-1/cpn60 chaperonin family TMO_1697 PF00166 Chaperonin 10 Kd subunit TMO_1698 PF13167 GTP-binding GTPase N-terminal TMO_1698 PF16360 GTP-binding GTPase Middle Region TMO_1698 PF01926 50S ribosome-binding GTPase TMO_1699 PF17209 Hfq protein TMO_1701 PF02254 TrkA-N domain TMO_1701 PF02080 TrkA-C domain TMO_1702 PF00158 Sigma-54 interaction domain TMO_1702 PF00072 Response regulator receiver domain TMO_1702 PF02954 Bacterial regulatory protein, Fis family TMO_1703 PF00672 HAMP domain TMO_1703 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1704 PF00158 Sigma-54 interaction domain TMO_1704 PF00072 Response regulator receiver domain TMO_1704 PF02954 Bacterial regulatory protein, Fis family TMO_1705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1705 PF00512 His Kinase A (phospho-acceptor) domain TMO_1705 PF00989 PAS fold TMO_1706 PF01207 Dihydrouridine synthase (Dus) TMO_1707 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TMO_1707 PF02542 YgbB family TMO_1708 PF04608 Phosphatidylglycerophosphatase A TMO_1709 PF02464 Competence-damaged protein TMO_1709 PF00994 Probable molybdopterin binding domain TMO_1710 PF12680 SnoaL-like domain TMO_1710 PF08281 Sigma-70, region 4 TMO_1710 PF04542 Sigma-70 region 2 TMO_1713 PF04055 Radical SAM superfamily TMO_1713 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family TMO_1714 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_1714 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TMO_1715 PF02817 e3 binding domain TMO_1715 PF00364 Biotin-requiring enzyme TMO_1715 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TMO_1716 PF02780 Transketolase, C-terminal domain TMO_1716 PF02779 Transketolase, pyrimidine binding domain TMO_1716 PF00364 Biotin-requiring enzyme TMO_1717 PF00676 Dehydrogenase E1 component TMO_1718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1718 PF03466 LysR substrate binding domain TMO_1719 PF00378 Enoyl-CoA hydratase/isomerase TMO_1721 PF04977 Septum formation initiator TMO_1723 PF02653 Branched-chain amino acid transport system / permease component TMO_1725 PF00005 ABC transporter TMO_1725 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_1726 PF00005 ABC transporter TMO_1727 PF01774 UreD urease accessory protein TMO_1728 PF00547 Urease, gamma subunit TMO_1729 PF00699 Urease beta subunit TMO_1730 PF01979 Amidohydrolase family TMO_1730 PF00449 Urease alpha-subunit, N-terminal domain TMO_1731 PF02814 UreE urease accessory protein, N-terminal domain TMO_1731 PF05194 UreE urease accessory protein, C-terminal domain TMO_1732 PF01730 UreF TMO_1733 PF02492 CobW/HypB/UreG, nucleotide-binding domain TMO_1739 PF02397 Bacterial sugar transferase TMO_1744 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1744 PF03466 LysR substrate binding domain TMO_1746 PF00113 Enolase, C-terminal TIM barrel domain TMO_1746 PF03952 Enolase, N-terminal domain TMO_1747 PF00793 DAHP synthetase I family TMO_1748 PF06418 CTP synthase N-terminus TMO_1748 PF00117 Glutamine amidotransferase class-I TMO_1750 PF00121 Triosephosphate isomerase TMO_1751 PF13145 PPIC-type PPIASE domain TMO_1752 PF00425 chorismate binding enzyme TMO_1752 PF04715 Anthranilate synthase component I, N terminal region TMO_1753 PF13302 Acetyltransferase (GNAT) domain TMO_1755 PF04748 Divergent polysaccharide deacetylase TMO_1756 PF00376 MerR family regulatory protein TMO_1756 PF09278 MerR, DNA binding TMO_1757 PF00403 Heavy-metal-associated domain TMO_1758 PF00117 Glutamine amidotransferase class-I TMO_1759 PF00591 Glycosyl transferase family, a/b domain TMO_1759 PF02885 Glycosyl transferase family, helical bundle domain TMO_1760 PF00218 Indole-3-glycerol phosphate synthase TMO_1761 PF01967 MoaC family TMO_1762 PF00994 Probable molybdopterin binding domain TMO_1762 PF03454 MoeA C-terminal region (domain IV) TMO_1762 PF03453 MoeA N-terminal region (domain I and II) TMO_1763 PF01726 LexA DNA binding domain TMO_1763 PF00717 Peptidase S24-like TMO_1764 PF03772 Competence protein TMO_1764 PF00753 Metallo-beta-lactamase superfamily TMO_1765 PF00749 tRNA synthetases class I (E and Q), catalytic domain TMO_1766 PF03180 NLPA lipoprotein TMO_1768 PF02684 Lipid-A-disaccharide synthetase TMO_1769 PF17930 LpxI N-terminal domain TMO_1769 PF06230 LpxI C-terminal domain TMO_1770 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_1770 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TMO_1771 PF07977 FabA-like domain TMO_1772 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TMO_1772 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_1774 PF07244 Surface antigen variable number repeat TMO_1774 PF01103 Surface antigen TMO_1775 PF17820 PDZ domain TMO_1775 PF02163 Peptidase family M50 TMO_1776 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TMO_1776 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TMO_1776 PF13288 DXP reductoisomerase C-terminal domain TMO_1778 PF01255 Putative undecaprenyl diphosphate synthase TMO_1779 PF01765 Ribosome recycling factor TMO_1780 PF00696 Amino acid kinase family TMO_1781 PF00889 Elongation factor TS TMO_1782 PF00318 Ribosomal protein S2 TMO_1783 PF14579 Helix-hairpin-helix motif TMO_1783 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TMO_1783 PF07733 Bacterial DNA polymerase III alpha NTPase domain TMO_1783 PF02811 PHP domain TMO_1787 PF01425 Amidase TMO_1789 PF00380 Ribosomal protein S9/S16 TMO_1790 PF00572 Ribosomal protein L13 TMO_1791 PF00378 Enoyl-CoA hydratase/isomerase TMO_1792 PF13380 CoA binding domain TMO_1793 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_1795 PF02525 Flavodoxin-like fold TMO_1796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1796 PF03466 LysR substrate binding domain TMO_1798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1798 PF03466 LysR substrate binding domain TMO_1799 PF00202 Aminotransferase class-III TMO_1804 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_1806 PF01966 HD domain TMO_1807 PF03091 CutA1 divalent ion tolerance protein TMO_1808 PF13411 MerR HTH family regulatory protein TMO_1809 PF00216 Bacterial DNA-binding protein TMO_1810 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TMO_1810 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TMO_1811 PF02504 Fatty acid synthesis protein TMO_1812 PF01783 Ribosomal L32p protein family TMO_1818 PF02769 AIR synthase related protein, C-terminal domain TMO_1818 PF00586 AIR synthase related protein, N-terminal domain TMO_1819 PF01029 NusB family TMO_1820 PF00885 6,7-dimethyl-8-ribityllumazine synthase TMO_1821 PF00925 GTP cyclohydrolase II TMO_1821 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TMO_1822 PF00677 Lumazine binding domain TMO_1823 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TMO_1823 PF01872 RibD C-terminal domain TMO_1824 PF03477 ATP cone domain TMO_1825 PF00464 Serine hydroxymethyltransferase TMO_1826 PF02502 Ribose/Galactose Isomerase TMO_1827 PF05443 ROS/MUCR transcriptional regulator protein TMO_1833 PF01336 OB-fold nucleic acid binding domain TMO_1833 PF00152 tRNA synthetases class II (D, K and N) TMO_1833 PF02938 GAD domain TMO_1834 PF00570 HRDC domain TMO_1834 PF01612 3'-5' exonuclease TMO_1837 PF01594 AI-2E family transporter TMO_1838 PF01066 CDP-alcohol phosphatidyltransferase TMO_1840 PF02769 AIR synthase related protein, C-terminal domain TMO_1840 PF00586 AIR synthase related protein, N-terminal domain TMO_1841 PF00551 Formyl transferase TMO_1842 PF00334 Nucleoside diphosphate kinase TMO_1843 PF12848 ABC transporter TMO_1843 PF00005 ABC transporter TMO_1846 PF00883 Cytosol aminopeptidase family, catalytic domain TMO_1846 PF02789 Cytosol aminopeptidase family, N-terminal domain TMO_1849 PF04453 LPS transport system D TMO_1850 PF09312 SurA N-terminal domain TMO_1850 PF00639 PPIC-type PPIASE domain TMO_1851 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TMO_1852 PF00398 Ribosomal RNA adenine dimethylase TMO_1853 PF01699 Sodium/calcium exchanger protein TMO_1854 PF00625 Guanylate kinase TMO_1855 PF03755 YicC-like family, N-terminal region TMO_1855 PF08340 Domain of unknown function (DUF1732) TMO_1856 PF00106 short chain dehydrogenase TMO_1857 PF07715 TonB-dependent Receptor Plug Domain TMO_1857 PF00593 TonB dependent receptor TMO_1859 PF01032 FecCD transport family TMO_1860 PF00005 ABC transporter TMO_1862 PF02618 YceG-like family TMO_1863 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_1863 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_1864 PF00550 Phosphopantetheine attachment site TMO_1866 PF00698 Acyl transferase domain TMO_1868 PF01250 Ribosomal protein S6 TMO_1869 PF01084 Ribosomal protein S18 TMO_1871 PF01281 Ribosomal protein L9, N-terminal domain TMO_1871 PF03948 Ribosomal protein L9, C-terminal domain TMO_1873 PF00772 DnaB-like helicase N terminal domain TMO_1873 PF03796 DnaB-like helicase C terminal domain TMO_1874 PF01168 Alanine racemase, N-terminal domain TMO_1874 PF00842 Alanine racemase, C-terminal domain TMO_1875 PF02405 Permease MlaE TMO_1876 PF00005 ABC transporter TMO_1877 PF18073 Rubredoxin metal binding domain TMO_1877 PF06745 KaiC TMO_1878 PF02674 Colicin V production protein TMO_1879 PF00156 Phosphoribosyl transferase domain TMO_1879 PF13537 Glutamine amidotransferase domain TMO_1880 PF00106 short chain dehydrogenase TMO_1883 PF00291 Pyridoxal-phosphate dependent enzyme TMO_1884 PF01926 50S ribosome-binding GTPase TMO_1884 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TMO_1888 PF01734 Patatin-like phospholipase TMO_1890 PF00107 Zinc-binding dehydrogenase TMO_1890 PF08240 Alcohol dehydrogenase GroES-like domain TMO_1892 PF00593 TonB dependent receptor TMO_1892 PF07715 TonB-dependent Receptor Plug Domain TMO_1892 PF07660 Secretin and TonB N terminus short domain TMO_1894 PF13532 2OG-Fe(II) oxygenase superfamily TMO_1895 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA TMO_1896 PF02887 Pyruvate kinase, alpha/beta domain TMO_1896 PF00224 Pyruvate kinase, barrel domain TMO_1900 PF13360 PQQ-like domain TMO_1901 PF02445 Quinolinate synthetase A protein TMO_1902 PF02910 Fumarate reductase flavoprotein C-term TMO_1902 PF00890 FAD binding domain TMO_1903 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TMO_1903 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TMO_1905 PF00072 Response regulator receiver domain TMO_1905 PF01966 HD domain TMO_1907 PF01925 Sulfite exporter TauE/SafE TMO_1908 PF10458 Valyl tRNA synthetase tRNA binding arm TMO_1908 PF00133 tRNA synthetases class I (I, L, M and V) TMO_1908 PF08264 Anticodon-binding domain of tRNA TMO_1910 PF02321 Outer membrane efflux protein TMO_1913 PF00501 AMP-binding enzyme TMO_1913 PF13193 AMP-binding enzyme C-terminal domain TMO_1915 PF00512 His Kinase A (phospho-acceptor) domain TMO_1915 PF01627 Hpt domain TMO_1915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1915 PF00072 Response regulator receiver domain TMO_1917 PF00437 Type II/IV secretion system protein TMO_1922 PF00263 Bacterial type II and III secretion system protein TMO_1922 PF03958 Bacterial type II/III secretion system short domain TMO_1924 PF00512 His Kinase A (phospho-acceptor) domain TMO_1924 PF00989 PAS fold TMO_1924 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1924 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1924 PF00512 His Kinase A (phospho-acceptor) domain TMO_1924 PF00989 PAS fold TMO_1925 PF14492 Elongation Factor G, domain II TMO_1925 PF00009 Elongation factor Tu GTP binding domain TMO_1925 PF03764 Elongation factor G, domain IV TMO_1925 PF00679 Elongation factor G C-terminus TMO_1928 PF07733 Bacterial DNA polymerase III alpha NTPase domain TMO_1928 PF01336 OB-fold nucleic acid binding domain TMO_1928 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TMO_1928 PF02811 PHP domain TMO_1928 PF14579 Helix-hairpin-helix motif TMO_1929 PF13649 Methyltransferase domain TMO_1930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1930 PF00512 His Kinase A (phospho-acceptor) domain TMO_1930 PF00989 PAS fold TMO_1931 PF04293 SpoVR like protein TMO_1933 PF06798 PrkA serine protein kinase C-terminal domain TMO_1933 PF08298 PrkA AAA domain TMO_1939 PF01032 FecCD transport family TMO_1940 PF00005 ABC transporter TMO_1941 PF17768 RecJ OB domain TMO_1941 PF02272 DHHA1 domain TMO_1941 PF01368 DHH family TMO_1942 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded TMO_1943 PF00742 Homoserine dehydrogenase TMO_1943 PF01842 ACT domain TMO_1943 PF03447 Homoserine dehydrogenase, NAD binding domain TMO_1944 PF00155 Aminotransferase class I and II TMO_1945 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus TMO_1945 PF00561 alpha/beta hydrolase fold TMO_1946 PF03466 LysR substrate binding domain TMO_1946 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1947 PF07690 Major Facilitator Superfamily TMO_1948 PF03601 Conserved hypothetical protein 698 TMO_1949 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_1950 PF00005 ABC transporter TMO_1951 PF02687 FtsX-like permease family TMO_1951 PF12704 MacB-like periplasmic core domain TMO_1954 PF00860 Permease family TMO_1957 PF08990 Erythronolide synthase docking TMO_1957 PF08240 Alcohol dehydrogenase GroES-like domain TMO_1957 PF16197 Ketoacyl-synthetase C-terminal extension TMO_1957 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_1957 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_1957 PF08659 KR domain TMO_1957 PF14765 Polyketide synthase dehydratase TMO_1957 PF00698 Acyl transferase domain TMO_1957 PF00550 Phosphopantetheine attachment site TMO_1958 PF03466 LysR substrate binding domain TMO_1958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1959 PF01810 LysE type translocator TMO_1962 PF17770 Ribonuclease J C-terminal domain TMO_1962 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TMO_1962 PF12706 Beta-lactamase superfamily domain TMO_1963 PF03309 Type III pantothenate kinase TMO_1964 PF08279 HTH domain TMO_1964 PF02237 Biotin protein ligase C terminal domain TMO_1964 PF03099 Biotin/lipoate A/B protein ligase family TMO_1965 PF00361 Proton-conducting membrane transporter TMO_1966 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus TMO_1966 PF00361 Proton-conducting membrane transporter TMO_1967 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TMO_1967 PF00361 Proton-conducting membrane transporter TMO_1968 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TMO_1969 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TMO_1970 PF12838 4Fe-4S dicluster domain TMO_1971 PF00146 NADH dehydrogenase TMO_1972 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal TMO_1972 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TMO_1972 PF00384 Molybdopterin oxidoreductase TMO_1973 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TMO_1973 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TMO_1973 PF10531 SLBB domain TMO_1975 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TMO_1976 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TMO_1977 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TMO_1978 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TMO_1979 PF00743 Flavin-binding monooxygenase-like TMO_1980 PF00216 Bacterial DNA-binding protein TMO_1981 PF02190 ATP-dependent protease La (LON) substrate-binding domain TMO_1981 PF05362 Lon protease (S16) C-terminal proteolytic domain TMO_1981 PF00004 ATPase family associated with various cellular activities (AAA) TMO_1982 PF07724 AAA domain (Cdc48 subfamily) TMO_1982 PF06689 ClpX C4-type zinc finger TMO_1982 PF10431 C-terminal, D2-small domain, of ClpB protein TMO_1983 PF00574 Clp protease TMO_1984 PF05698 Bacterial trigger factor protein (TF) C-terminus TMO_1984 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TMO_1984 PF05697 Bacterial trigger factor protein (TF) TMO_1986 PF01757 Acyltransferase family TMO_1988 PF03853 YjeF-related protein N-terminus TMO_1988 PF01256 Carbohydrate kinase TMO_1989 PF01471 Putative peptidoglycan binding domain TMO_1989 PF08238 Sel1 repeat TMO_1991 PF00155 Aminotransferase class I and II TMO_1992 PF00543 Nitrogen regulatory protein P-II TMO_1993 PF03951 Glutamine synthetase, beta-Grasp domain TMO_1993 PF00120 Glutamine synthetase, catalytic domain TMO_1995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_1995 PF03466 LysR substrate binding domain TMO_1996 PF01751 Toprim domain TMO_1996 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_1996 PF00204 DNA gyrase B TMO_1996 PF00986 DNA gyrase B subunit, carboxyl terminus TMO_2001 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_2003 PF07969 Amidohydrolase family TMO_2004 PF12697 Alpha/beta hydrolase family TMO_2005 PF00857 Isochorismatase family TMO_2006 PF00271 Helicase conserved C-terminal domain TMO_2006 PF00270 DEAD/DEAH box helicase TMO_2007 PF12697 Alpha/beta hydrolase family TMO_2009 PF02653 Branched-chain amino acid transport system / permease component TMO_2010 PF00005 ABC transporter TMO_2011 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_2011 PF00005 ABC transporter TMO_2013 PF02954 Bacterial regulatory protein, Fis family TMO_2013 PF13185 GAF domain TMO_2013 PF00158 Sigma-54 interaction domain TMO_2014 PF00756 Putative esterase TMO_2015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TMO_2015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TMO_2015 PF00205 Thiamine pyrophosphate enzyme, central domain TMO_2016 PF00970 Oxidoreductase FAD-binding domain TMO_2016 PF00042 Globin TMO_2016 PF00175 Oxidoreductase NAD-binding domain TMO_2018 PF00534 Glycosyl transferases group 1 TMO_2019 PF00534 Glycosyl transferases group 1 TMO_2019 PF13439 Glycosyltransferase Family 4 TMO_2024 PF00005 ABC transporter TMO_2024 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_2025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_2026 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2027 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_2027 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2028 PF00325 Bacterial regulatory proteins, crp family TMO_2028 PF00027 Cyclic nucleotide-binding domain TMO_2029 PF02673 Bacitracin resistance protein BacA TMO_2030 PF00378 Enoyl-CoA hydratase/isomerase TMO_2031 PF02633 Creatinine amidohydrolase TMO_2032 PF00296 Luciferase-like monooxygenase TMO_2033 PF00378 Enoyl-CoA hydratase/isomerase TMO_2034 PF00501 AMP-binding enzyme TMO_2035 PF00925 GTP cyclohydrolase II TMO_2035 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TMO_2036 PF01613 Flavin reductase like domain TMO_2037 PF07690 Major Facilitator Superfamily TMO_2038 PF12833 Helix-turn-helix domain TMO_2038 PF02311 AraC-like ligand binding domain TMO_2039 PF01037 Lrp/AsnC ligand binding domain TMO_2040 PF01207 Dihydrouridine synthase (Dus) TMO_2044 PF13458 Periplasmic binding protein TMO_2046 PF00005 ABC transporter TMO_2047 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_2047 PF00005 ABC transporter TMO_2048 PF11862 Domain of unknown function (DUF3382) TMO_2048 PF02653 Branched-chain amino acid transport system / permease component TMO_2049 PF02653 Branched-chain amino acid transport system / permease component TMO_2051 PF00155 Aminotransferase class I and II TMO_2052 PF00027 Cyclic nucleotide-binding domain TMO_2052 PF13545 Crp-like helix-turn-helix domain TMO_2056 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TMO_2058 PF13493 Domain of unknown function (DUF4118) TMO_2058 PF00512 His Kinase A (phospho-acceptor) domain TMO_2058 PF02702 Osmosensitive K+ channel His kinase sensor domain TMO_2058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_2058 PF13492 GAF domain TMO_2059 PF00486 Transcriptional regulatory protein, C terminal TMO_2059 PF00072 Response regulator receiver domain TMO_2063 PF00271 Helicase conserved C-terminal domain TMO_2063 PF00270 DEAD/DEAH box helicase TMO_2063 PF08494 DEAD/H associated TMO_2065 PF01068 ATP dependent DNA ligase domain TMO_2065 PF04679 ATP dependent DNA ligase C terminal region TMO_2065 PF04675 DNA ligase N terminus TMO_2066 PF01734 Patatin-like phospholipase TMO_2066 PF11856 Protein of unknown function (DUF3376) TMO_2070 PF01544 CorA-like Mg2+ transporter protein TMO_2072 PF07715 TonB-dependent Receptor Plug Domain TMO_2072 PF00593 TonB dependent receptor TMO_2075 PF01593 Flavin containing amine oxidoreductase TMO_2078 PF07244 Surface antigen variable number repeat TMO_2078 PF01103 Surface antigen TMO_2078 PF17243 POTRA domain TamA domain 1 TMO_2081 PF07690 Major Facilitator Superfamily TMO_2084 PF02803 Thiolase, C-terminal domain TMO_2084 PF00108 Thiolase, N-terminal domain TMO_2085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_2085 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain TMO_2085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_2086 PF09339 IclR helix-turn-helix domain TMO_2089 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TMO_2089 PF01842 ACT domain TMO_2089 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TMO_2090 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2092 PF00005 ABC transporter TMO_2093 PF06299 Protein of unknown function (DUF1045) TMO_2095 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TMO_2095 PF02885 Glycosyl transferase family, helical bundle domain TMO_2095 PF00591 Glycosyl transferase family, a/b domain TMO_2096 PF07969 Amidohydrolase family TMO_2097 PF00005 ABC transporter TMO_2098 PF00005 ABC transporter TMO_2099 PF06007 Phosphonate metabolism protein PhnJ TMO_2100 PF05861 Bacterial phosphonate metabolism protein (PhnI) TMO_2101 PF05845 Bacterial phosphonate metabolism protein (PhnH) TMO_2102 PF06754 Phosphonate metabolism protein PhnG TMO_2103 PF00392 Bacterial regulatory proteins, gntR family TMO_2104 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TMO_2108 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TMO_2109 PF00271 Helicase conserved C-terminal domain TMO_2109 PF00570 HRDC domain TMO_2109 PF09382 RQC domain TMO_2109 PF00270 DEAD/DEAH box helicase TMO_2109 PF16124 RecQ zinc-binding TMO_2110 PF00563 EAL domain TMO_2110 PF00990 Diguanylate cyclase, GGDEF domain TMO_2110 PF03707 Bacterial signalling protein N terminal repeat TMO_2111 PF00892 EamA-like transporter family TMO_2113 PF03734 L,D-transpeptidase catalytic domain TMO_2113 PF17969 L,D-transpeptidase C-terminal domain TMO_2115 PF02567 Phenazine biosynthesis-like protein TMO_2116 PF01609 Transposase DDE domain TMO_2116 PF13808 DDE_Tnp_1-associated TMO_2117 PF02566 OsmC-like protein TMO_2118 PF07690 Major Facilitator Superfamily TMO_2119 PF11856 Protein of unknown function (DUF3376) TMO_2119 PF01734 Patatin-like phospholipase TMO_2121 PF00226 DnaJ domain TMO_2121 PF01556 DnaJ C terminal domain TMO_2123 PF03600 Citrate transporter TMO_2123 PF02080 TrkA-C domain TMO_2124 PF02798 Glutathione S-transferase, N-terminal domain TMO_2124 PF00043 Glutathione S-transferase, C-terminal domain TMO_2125 PF01804 Penicillin amidase TMO_2126 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_2129 PF07729 FCD domain TMO_2129 PF00392 Bacterial regulatory proteins, gntR family TMO_2131 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_2132 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_2132 PF00005 ABC transporter TMO_2133 PF00005 ABC transporter TMO_2135 PF02653 Branched-chain amino acid transport system / permease component TMO_2136 PF02653 Branched-chain amino acid transport system / permease component TMO_2137 PF17200 Single Cache domain 2 TMO_2137 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_2137 PF00672 HAMP domain TMO_2139 PF04454 Encapsulating protein for peroxidase TMO_2141 PF02535 ZIP Zinc transporter TMO_2143 PF03594 Benzoate membrane transport protein TMO_2144 PF03205 Molybdopterin guanine dinucleotide synthesis protein B TMO_2145 PF00005 ABC transporter TMO_2146 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2147 PF00005 ABC transporter TMO_2148 PF04324 BFD-like [2Fe-2S] binding domain TMO_2148 PF18267 Rubredoxin NAD+ reductase C-terminal domain TMO_2148 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_2148 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TMO_2148 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TMO_2149 PF00355 Rieske [2Fe-2S] domain TMO_2150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TMO_2150 PF01568 Molydopterin dinucleotide binding domain TMO_2150 PF04324 BFD-like [2Fe-2S] binding domain TMO_2150 PF00384 Molybdopterin oxidoreductase TMO_2152 PF14824 Sirohaem biosynthesis protein central TMO_2152 PF10414 Sirohaem synthase dimerisation region TMO_2152 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TMO_2153 PF00591 Glycosyl transferase family, a/b domain TMO_2153 PF02885 Glycosyl transferase family, helical bundle domain TMO_2154 PF00512 His Kinase A (phospho-acceptor) domain TMO_2154 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_2154 PF00072 Response regulator receiver domain TMO_2154 PF00497 Bacterial extracellular solute-binding proteins, family 3 TMO_2154 PF01627 Hpt domain TMO_2155 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TMO_2155 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TMO_2156 PF03616 Sodium/glutamate symporter TMO_2158 PF00005 ABC transporter TMO_2159 PF13533 Biotin-lipoyl like TMO_2161 PF07883 Cupin domain TMO_2163 PF00106 short chain dehydrogenase TMO_2163 PF00561 alpha/beta hydrolase fold TMO_2166 PF00994 Probable molybdopterin binding domain TMO_2166 PF02464 Competence-damaged protein TMO_2166 PF18146 Damage-inducible protein CinA KH domain TMO_2168 PF17746 SfsA N-terminal OB domain TMO_2168 PF03749 Sugar fermentation stimulation protein RE domain TMO_2169 PF00557 Metallopeptidase family M24 TMO_2170 PF04002 RadC-like JAB domain TMO_2178 PF08534 Redoxin TMO_2178 PF00462 Glutaredoxin TMO_2180 PF02311 AraC-like ligand binding domain TMO_2180 PF12833 Helix-turn-helix domain TMO_2181 PF00440 Bacterial regulatory proteins, tetR family TMO_2182 PF01638 HxlR-like helix-turn-helix TMO_2184 PF01494 FAD binding domain TMO_2185 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_2187 PF03743 Bacterial conjugation TrbI-like protein TMO_2190 PF04610 TrbL/VirB6 plasmid conjugal transfer protein TMO_2192 PF03135 CagE, TrbE, VirB family, component of type IV transporter system TMO_2195 PF00437 Type II/IV secretion system protein TMO_2197 PF02534 Type IV secretory system Conjugative DNA transfer TMO_2200 PF10502 Signal peptidase, peptidase S26 TMO_2203 PF13614 AAA domain TMO_2208 PF01381 Helix-turn-helix TMO_2209 PF08241 Methyltransferase domain TMO_2210 PF05284 Protein of unknown function (DUF736) TMO_2211 PF02811 PHP domain TMO_2211 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TMO_2211 PF07733 Bacterial DNA polymerase III alpha NTPase domain TMO_2211 PF14579 Helix-hairpin-helix motif TMO_2227 PF18818 Metallopeptidase superfamily domain TMO_2227 PF08401 Domain of unknown function (DUF1738) TMO_2227 PF13362 Toprim domain TMO_2234 PF05275 Copper resistance protein B precursor (CopB) TMO_2235 PF07732 Multicopper oxidase TMO_2235 PF07731 Multicopper oxidase TMO_2235 PF00394 Multicopper oxidase TMO_2238 PF00403 Heavy-metal-associated domain TMO_2240 PF00175 Oxidoreductase NAD-binding domain TMO_2240 PF00970 Oxidoreductase FAD-binding domain TMO_2240 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_2241 PF00376 MerR family regulatory protein TMO_2241 PF09278 MerR, DNA binding TMO_2242 PF07690 Major Facilitator Superfamily TMO_2245 PF01545 Cation efflux family TMO_2245 PF16916 Dimerisation domain of Zinc Transporter TMO_2246 PF00873 AcrB/AcrD/AcrF family TMO_2247 PF00529 HlyD membrane-fusion protein of T1SS TMO_2247 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_2248 PF03466 LysR substrate binding domain TMO_2248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2250 PF04002 RadC-like JAB domain TMO_2251 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_2252 PF10397 Adenylosuccinate lyase C-terminus TMO_2252 PF00206 Lyase TMO_2257 PF01259 SAICAR synthetase TMO_2258 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase TMO_2260 PF00586 AIR synthase related protein, N-terminal domain TMO_2260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TMO_2260 PF02769 AIR synthase related protein, C-terminal domain TMO_2261 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TMO_2261 PF02769 AIR synthase related protein, C-terminal domain TMO_2261 PF00586 AIR synthase related protein, N-terminal domain TMO_2262 PF01722 BolA-like protein TMO_2263 PF00462 Glutaredoxin TMO_2267 PF07715 TonB-dependent Receptor Plug Domain TMO_2267 PF00593 TonB dependent receptor TMO_2271 PF01979 Amidohydrolase family TMO_2272 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_2273 PF00581 Rhodanese-like domain TMO_2274 PF03466 LysR substrate binding domain TMO_2274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2277 PF03401 Tripartite tricarboxylate transporter family receptor TMO_2279 PF00115 Cytochrome C and Quinol oxidase polypeptide I TMO_2282 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TMO_2282 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TMO_2283 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase TMO_2283 PF12801 4Fe-4S binding domain TMO_2283 PF13746 4Fe-4S dicluster domain TMO_2287 PF01479 S4 domain TMO_2287 PF00163 Ribosomal protein S4/S9 N-terminal domain TMO_2288 PF00005 ABC transporter TMO_2289 PF01032 FecCD transport family TMO_2291 PF00593 TonB dependent receptor TMO_2291 PF07715 TonB-dependent Receptor Plug Domain TMO_2293 PF00857 Isochorismatase family TMO_2294 PF00682 HMGL-like TMO_2294 PF08502 LeuA allosteric (dimerisation) domain TMO_2297 PF09190 DALR domain TMO_2297 PF01406 tRNA synthetases class I (C) catalytic domain TMO_2298 PF00749 tRNA synthetases class I (E and Q), catalytic domain TMO_2299 PF00795 Carbon-nitrogen hydrolase TMO_2299 PF02540 NAD synthase TMO_2301 PF01474 Class-II DAHP synthetase family TMO_2302 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_2302 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TMO_2303 PF00171 Aldehyde dehydrogenase family TMO_2306 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_2308 PF01979 Amidohydrolase family TMO_2309 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_2311 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_2313 PF01380 SIS domain TMO_2329 PF00291 Pyridoxal-phosphate dependent enzyme TMO_2330 PF02080 TrkA-C domain TMO_2330 PF00999 Sodium/hydrogen exchanger family TMO_2330 PF03471 Transporter associated domain TMO_2333 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_2334 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TMO_2334 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TMO_2335 PF14824 Sirohaem biosynthesis protein central TMO_2335 PF10414 Sirohaem synthase dimerisation region TMO_2335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TMO_2336 PF01507 Phosphoadenosine phosphosulfate reductase family TMO_2337 PF00459 Inositol monophosphatase family TMO_2338 PF02631 RecX family TMO_2339 PF13614 AAA domain TMO_2341 PF03481 Putative GTP-binding controlling metal-binding TMO_2341 PF01300 Telomere recombination TMO_2342 PF00512 His Kinase A (phospho-acceptor) domain TMO_2342 PF00989 PAS fold TMO_2342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_2344 PF01565 FAD binding domain TMO_2344 PF02913 FAD linked oxidases, C-terminal domain TMO_2346 PF00221 Aromatic amino acid lyase TMO_2347 PF01979 Amidohydrolase family TMO_2348 PF01979 Amidohydrolase family TMO_2349 PF00392 Bacterial regulatory proteins, gntR family TMO_2349 PF07702 UTRA domain TMO_2351 PF00291 Pyridoxal-phosphate dependent enzyme TMO_2354 PF01810 LysE type translocator TMO_2356 PF02203 Tar ligand binding domain homologue TMO_2356 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_2356 PF00672 HAMP domain TMO_2357 PF16527 Two-component sensor protein CpxA, periplasmic domain TMO_2357 PF00672 HAMP domain TMO_2357 PF00512 His Kinase A (phospho-acceptor) domain TMO_2357 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_2358 PF00486 Transcriptional regulatory protein, C terminal TMO_2358 PF00072 Response regulator receiver domain TMO_2359 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_2360 PF02687 FtsX-like permease family TMO_2360 PF12704 MacB-like periplasmic core domain TMO_2360 PF00005 ABC transporter TMO_2361 PF02321 Outer membrane efflux protein TMO_2364 PF08361 MAATS-type transcriptional repressor, C-terminal region TMO_2364 PF00440 Bacterial regulatory proteins, tetR family TMO_2366 PF02803 Thiolase, C-terminal domain TMO_2366 PF00108 Thiolase, N-terminal domain TMO_2383 PF03237 Terminase-like family TMO_2384 PF11985 Protein of unknown function (DUF3486) TMO_2396 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) TMO_2408 PF00108 Thiolase, N-terminal domain TMO_2408 PF02803 Thiolase, C-terminal domain TMO_2409 PF00268 Ribonucleotide reductase, small chain TMO_2410 PF03477 ATP cone domain TMO_2410 PF02867 Ribonucleotide reductase, barrel domain TMO_2410 PF00317 Ribonucleotide reductase, all-alpha domain TMO_2411 PF02867 Ribonucleotide reductase, barrel domain TMO_2411 PF03477 ATP cone domain TMO_2411 PF00317 Ribonucleotide reductase, all-alpha domain TMO_2412 PF09856 Predicted transcriptional regulator (DUF2083) TMO_2412 PF06114 IrrE N-terminal-like domain TMO_2412 PF01381 Helix-turn-helix TMO_2413 PF03972 MmgE/PrpD family TMO_2414 PF00285 Citrate synthase, C-terminal domain TMO_2416 PF01717 Cobalamin-independent synthase, Catalytic domain TMO_2416 PF08267 Cobalamin-independent synthase, N-terminal domain TMO_2417 PF01757 Acyltransferase family TMO_2421 PF13193 AMP-binding enzyme C-terminal domain TMO_2421 PF00501 AMP-binding enzyme TMO_2422 PF00378 Enoyl-CoA hydratase/isomerase TMO_2423 PF00440 Bacterial regulatory proteins, tetR family TMO_2424 PF02566 OsmC-like protein TMO_2430 PF00999 Sodium/hydrogen exchanger family TMO_2431 PF01494 FAD binding domain TMO_2432 PF00206 Lyase TMO_2432 PF10397 Adenylosuccinate lyase C-terminus TMO_2434 PF00775 Dioxygenase TMO_2434 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal TMO_2435 PF02627 Carboxymuconolactone decarboxylase family TMO_2436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2436 PF03466 LysR substrate binding domain TMO_2437 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_2439 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_2442 PF00571 CBS domain TMO_2445 PF01037 Lrp/AsnC ligand binding domain TMO_2448 PF02511 Thymidylate synthase complementing protein TMO_2455 PF13593 SBF-like CPA transporter family (DUF4137) TMO_2456 PF03466 LysR substrate binding domain TMO_2456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2459 PF03466 LysR substrate binding domain TMO_2459 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2460 PF07690 Major Facilitator Superfamily TMO_2462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2462 PF03466 LysR substrate binding domain TMO_2463 PF00248 Aldo/keto reductase family TMO_2471 PF00005 ABC transporter TMO_2472 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2473 PF09084 NMT1/THI5 like TMO_2476 PF03334 Na+/H+ antiporter subunit TMO_2479 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TMO_2480 PF00361 Proton-conducting membrane transporter TMO_2481 PF00361 Proton-conducting membrane transporter TMO_2483 PF00361 Proton-conducting membrane transporter TMO_2490 PF12833 Helix-turn-helix domain TMO_2490 PF06719 AraC-type transcriptional regulator N-terminus TMO_2493 PF00472 RF-1 domain TMO_2494 PF02743 Cache domain TMO_2494 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_2494 PF00672 HAMP domain TMO_2495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_2495 PF17200 Single Cache domain 2 TMO_2495 PF00672 HAMP domain TMO_2496 PF01435 Peptidase family M48 TMO_2498 PF00578 AhpC/TSA family TMO_2499 PF02627 Carboxymuconolactone decarboxylase family TMO_2500 PF13537 Glutamine amidotransferase domain TMO_2500 PF00733 Asparagine synthase TMO_2501 PF08245 Mur ligase middle domain TMO_2501 PF02875 Mur ligase family, glutamate ligase domain TMO_2501 PF08443 RimK-like ATP-grasp domain TMO_2502 PF05343 M42 glutamyl aminopeptidase TMO_2503 PF00571 CBS domain TMO_2503 PF00291 Pyridoxal-phosphate dependent enzyme TMO_2504 PF02272 DHHA1 domain TMO_2504 PF01411 tRNA synthetases class II (A) TMO_2504 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TMO_2506 PF00581 Rhodanese-like domain TMO_2508 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_2508 PF04324 BFD-like [2Fe-2S] binding domain TMO_2511 PF00005 ABC transporter TMO_2512 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2513 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2514 PF00497 Bacterial extracellular solute-binding proteins, family 3 TMO_2515 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_2516 PF07995 Glucose / Sorbosone dehydrogenase TMO_2518 PF02954 Bacterial regulatory protein, Fis family TMO_2518 PF00072 Response regulator receiver domain TMO_2518 PF00158 Sigma-54 interaction domain TMO_2522 PF13195 Protein of unknown function (DUF4011) TMO_2522 PF13086 AAA domain TMO_2522 PF13087 AAA domain TMO_2523 PF13195 Protein of unknown function (DUF4011) TMO_2523 PF13087 AAA domain TMO_2523 PF13086 AAA domain TMO_2524 PF03466 LysR substrate binding domain TMO_2524 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2526 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_2529 PF00378 Enoyl-CoA hydratase/isomerase TMO_2530 PF00378 Enoyl-CoA hydratase/isomerase TMO_2531 PF02515 CoA-transferase family III TMO_2532 PF02515 CoA-transferase family III TMO_2533 PF13416 Bacterial extracellular solute-binding protein TMO_2534 PF00005 ABC transporter TMO_2534 PF08402 TOBE domain TMO_2535 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2536 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2537 PF00171 Aldehyde dehydrogenase family TMO_2539 PF00106 short chain dehydrogenase TMO_2540 PF13439 Glycosyltransferase Family 4 TMO_2540 PF00534 Glycosyl transferases group 1 TMO_2541 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_2541 PF14602 Hexapeptide repeat of succinyl-transferase TMO_2541 PF12804 MobA-like NTP transferase domain TMO_2542 PF01235 Sodium:alanine symporter family TMO_2544 PF00005 ABC transporter TMO_2546 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TMO_2546 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TMO_2547 PF01979 Amidohydrolase family TMO_2548 PF02660 Glycerol-3-phosphate acyltransferase TMO_2549 PF00975 Thioesterase domain TMO_2549 PF00550 Phosphopantetheine attachment site TMO_2549 PF00668 Condensation domain TMO_2549 PF00501 AMP-binding enzyme TMO_2549 PF13193 AMP-binding enzyme C-terminal domain TMO_2551 PF02481 DNA recombination-mediator protein A TMO_2551 PF17782 DprA winged helix domain TMO_2552 PF01131 DNA topoisomerase TMO_2552 PF01396 Topoisomerase DNA binding C4 zinc finger TMO_2552 PF13368 Topoisomerase C-terminal repeat TMO_2552 PF01751 Toprim domain TMO_2553 PF08461 Ribonuclease R winged-helix domain TMO_2553 PF17876 Cold shock domain TMO_2553 PF00575 S1 RNA binding domain TMO_2553 PF08206 Ribonuclease B OB domain TMO_2553 PF00773 RNB domain TMO_2554 PF03328 HpcH/HpaI aldolase/citrate lyase family TMO_2555 PF07690 Major Facilitator Superfamily TMO_2556 PF00970 Oxidoreductase FAD-binding domain TMO_2556 PF00175 Oxidoreductase NAD-binding domain TMO_2558 PF00471 Ribosomal protein L33 TMO_2559 PF00072 Response regulator receiver domain TMO_2559 PF00990 Diguanylate cyclase, GGDEF domain TMO_2560 PF00072 Response regulator receiver domain TMO_2561 PF00480 ROK family TMO_2562 PF00817 impB/mucB/samB family TMO_2562 PF11799 impB/mucB/samB family C-terminal domain TMO_2565 PF00795 Carbon-nitrogen hydrolase TMO_2566 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) TMO_2568 PF00871 Acetokinase family TMO_2569 PF01515 Phosphate acetyl/butaryl transferase TMO_2570 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TMO_2570 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TMO_2571 PF01047 MarR family TMO_2573 PF00364 Biotin-requiring enzyme TMO_2573 PF00289 Biotin carboxylase, N-terminal domain TMO_2573 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_2573 PF02785 Biotin carboxylase C-terminal domain TMO_2574 PF00378 Enoyl-CoA hydratase/isomerase TMO_2575 PF01039 Carboxyl transferase domain TMO_2576 PF01323 DSBA-like thioredoxin domain TMO_2577 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_2577 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_2577 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_2578 PF02803 Thiolase, C-terminal domain TMO_2578 PF00108 Thiolase, N-terminal domain TMO_2579 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_2579 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_2579 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_2581 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2581 PF03466 LysR substrate binding domain TMO_2583 PF01965 DJ-1/PfpI family TMO_2584 PF01965 DJ-1/PfpI family TMO_2585 PF07690 Major Facilitator Superfamily TMO_2586 PF04542 Sigma-70 region 2 TMO_2586 PF08281 Sigma-70, region 4 TMO_2586 PF12680 SnoaL-like domain TMO_2588 PF00593 TonB dependent receptor TMO_2588 PF07715 TonB-dependent Receptor Plug Domain TMO_2590 PF01757 Acyltransferase family TMO_2591 PF03448 MgtE intracellular N domain TMO_2591 PF01769 Divalent cation transporter TMO_2591 PF00571 CBS domain TMO_2592 PF00390 Malic enzyme, N-terminal domain TMO_2592 PF03949 Malic enzyme, NAD binding domain TMO_2592 PF01515 Phosphate acetyl/butaryl transferase TMO_2593 PF03099 Biotin/lipoate A/B protein ligase family TMO_2594 PF02632 BioY family TMO_2596 PF00708 Acylphosphatase TMO_2597 PF01565 FAD binding domain TMO_2597 PF02913 FAD linked oxidases, C-terminal domain TMO_2598 PF00289 Biotin carboxylase, N-terminal domain TMO_2598 PF00364 Biotin-requiring enzyme TMO_2598 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_2598 PF02785 Biotin carboxylase C-terminal domain TMO_2600 PF01039 Carboxyl transferase domain TMO_2602 PF13419 Haloacid dehalogenase-like hydrolase TMO_2603 PF00849 RNA pseudouridylate synthase TMO_2603 PF01479 S4 domain TMO_2604 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TMO_2605 PF00004 ATPase family associated with various cellular activities (AAA) TMO_2605 PF16193 AAA C-terminal domain TMO_2605 PF12002 MgsA AAA+ ATPase C terminal TMO_2606 PF17820 PDZ domain TMO_2606 PF13180 PDZ domain TMO_2607 PF01196 Ribosomal protein L17 TMO_2608 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TMO_2608 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TMO_2608 PF01000 RNA polymerase Rpb3/RpoA insert domain TMO_2609 PF00411 Ribosomal protein S11 TMO_2610 PF00416 Ribosomal protein S13/S18 TMO_2611 PF05191 Adenylate kinase, active site lid TMO_2612 PF00344 SecY translocase TMO_2613 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TMO_2614 PF00327 Ribosomal protein L30p/L7e TMO_2615 PF00333 Ribosomal protein S5, N-terminal domain TMO_2615 PF03719 Ribosomal protein S5, C-terminal domain TMO_2616 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TMO_2617 PF00347 Ribosomal protein L6 TMO_2618 PF00410 Ribosomal protein S8 TMO_2619 PF00253 Ribosomal protein S14p/S29e TMO_2620 PF00281 Ribosomal protein L5 TMO_2620 PF00673 ribosomal L5P family C-terminus TMO_2621 PF00467 KOW motif TMO_2621 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TMO_2622 PF00238 Ribosomal protein L14p/L23e TMO_2623 PF00366 Ribosomal protein S17 TMO_2624 PF00831 Ribosomal L29 protein TMO_2625 PF00252 Ribosomal protein L16p/L10e TMO_2626 PF07650 KH domain TMO_2626 PF00189 Ribosomal protein S3, C-terminal domain TMO_2627 PF00237 Ribosomal protein L22p/L17e TMO_2628 PF00203 Ribosomal protein S19 TMO_2629 PF00181 Ribosomal Proteins L2, RNA binding domain TMO_2629 PF03947 Ribosomal Proteins L2, C-terminal domain TMO_2630 PF00276 Ribosomal protein L23 TMO_2631 PF00573 Ribosomal protein L4/L1 family TMO_2632 PF00297 Ribosomal protein L3 TMO_2633 PF00338 Ribosomal protein S10p/S20e TMO_2634 PF03143 Elongation factor Tu C-terminal domain TMO_2634 PF03144 Elongation factor Tu domain 2 TMO_2634 PF00009 Elongation factor Tu GTP binding domain TMO_2635 PF00009 Elongation factor Tu GTP binding domain TMO_2635 PF03144 Elongation factor Tu domain 2 TMO_2635 PF00679 Elongation factor G C-terminus TMO_2635 PF14492 Elongation Factor G, domain II TMO_2635 PF03764 Elongation factor G, domain IV TMO_2636 PF00177 Ribosomal protein S7p/S5e TMO_2637 PF00164 Ribosomal protein S12/S23 TMO_2638 PF00623 RNA polymerase Rpb1, domain 2 TMO_2638 PF04997 RNA polymerase Rpb1, domain 1 TMO_2638 PF04998 RNA polymerase Rpb1, domain 5 TMO_2638 PF05000 RNA polymerase Rpb1, domain 4 TMO_2638 PF04983 RNA polymerase Rpb1, domain 3 TMO_2639 PF04563 RNA polymerase beta subunit TMO_2639 PF04561 RNA polymerase Rpb2, domain 2 TMO_2639 PF10385 RNA polymerase beta subunit external 1 domain TMO_2639 PF04565 RNA polymerase Rpb2, domain 3 TMO_2639 PF04560 RNA polymerase Rpb2, domain 7 TMO_2639 PF00562 RNA polymerase Rpb2, domain 6 TMO_2641 PF00542 Ribosomal protein L7/L12 C-terminal domain TMO_2641 PF16320 Ribosomal protein L7/L12 dimerisation domain TMO_2642 PF00466 Ribosomal protein L10 TMO_2643 PF00687 Ribosomal protein L1p/L10e family TMO_2644 PF03946 Ribosomal protein L11, N-terminal domain TMO_2644 PF00298 Ribosomal protein L11, RNA binding domain TMO_2645 PF02357 Transcription termination factor nusG TMO_2645 PF00467 KOW motif TMO_2646 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TMO_2647 PF03143 Elongation factor Tu C-terminal domain TMO_2647 PF03144 Elongation factor Tu domain 2 TMO_2647 PF00009 Elongation factor Tu GTP binding domain TMO_2648 PF00588 SpoU rRNA Methylase family TMO_2648 PF08032 RNA 2'-O ribose methyltransferase substrate binding TMO_2649 PF00582 Universal stress protein family TMO_2649 PF00512 His Kinase A (phospho-acceptor) domain TMO_2649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_2649 PF13493 Domain of unknown function (DUF4118) TMO_2649 PF02702 Osmosensitive K+ channel His kinase sensor domain TMO_2650 PF00072 Response regulator receiver domain TMO_2650 PF00486 Transcriptional regulatory protein, C terminal TMO_2651 PF13180 PDZ domain TMO_2652 PF00384 Molybdopterin oxidoreductase TMO_2652 PF01568 Molydopterin dinucleotide binding domain TMO_2653 PF00005 ABC transporter TMO_2653 PF00664 ABC transporter transmembrane region TMO_2657 PF03441 FAD binding domain of DNA photolyase TMO_2657 PF00875 DNA photolyase TMO_2658 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TMO_2658 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_2661 PF00106 short chain dehydrogenase TMO_2663 PF04244 Deoxyribodipyrimidine photo-lyase-related protein TMO_2665 PF02321 Outer membrane efflux protein TMO_2666 PF00873 AcrB/AcrD/AcrF family TMO_2667 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_2668 PF08361 MAATS-type transcriptional repressor, C-terminal region TMO_2668 PF00440 Bacterial regulatory proteins, tetR family TMO_2669 PF00872 Transposase, Mutator family TMO_2670 PF13676 TIR domain TMO_2675 PF01618 MotA/TolQ/ExbB proton channel family TMO_2676 PF02472 Biopolymer transport protein ExbD/TolR TMO_2678 PF00994 Probable molybdopterin binding domain TMO_2680 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase TMO_2682 PF00535 Glycosyl transferase family 2 TMO_2683 PF00512 His Kinase A (phospho-acceptor) domain TMO_2683 PF08521 Two-component sensor kinase N-terminal TMO_2683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_2684 PF00072 Response regulator receiver domain TMO_2684 PF00486 Transcriptional regulatory protein, C terminal TMO_2685 PF09297 NADH pyrophosphatase zinc ribbon domain TMO_2685 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain TMO_2685 PF00293 NUDIX domain TMO_2686 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding TMO_2686 PF12169 DNA polymerase III subunits gamma and tau domain III TMO_2686 PF12170 DNA polymerase III tau subunit V interacting with alpha TMO_2687 PF02575 YbaB/EbfC DNA-binding family TMO_2691 PF00210 Ferritin-like domain TMO_2693 PF13662 Toprim domain TMO_2693 PF02132 RecR protein TMO_2697 PF02646 RmuC family TMO_2698 PF01327 Polypeptide deformylase TMO_2699 PF02911 Formyl transferase, C-terminal domain TMO_2699 PF00551 Formyl transferase TMO_2701 PF00593 TonB dependent receptor TMO_2701 PF07715 TonB-dependent Receptor Plug Domain TMO_2703 PF12680 SnoaL-like domain TMO_2703 PF08281 Sigma-70, region 4 TMO_2703 PF04542 Sigma-70 region 2 TMO_2705 PF07687 Peptidase dimerisation domain TMO_2705 PF01546 Peptidase family M20/M25/M40 TMO_2706 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal TMO_2706 PF14602 Hexapeptide repeat of succinyl-transferase TMO_2706 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_2708 PF00990 Diguanylate cyclase, GGDEF domain TMO_2708 PF08448 PAS fold TMO_2708 PF00563 EAL domain TMO_2709 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_2709 PF00672 HAMP domain TMO_2709 PF13426 PAS domain TMO_2710 PF00696 Amino acid kinase family TMO_2711 PF01926 50S ribosome-binding GTPase TMO_2712 PF02096 60Kd inner membrane protein TMO_2712 PF14849 YidC periplasmic domain TMO_2713 PF01809 Putative membrane protein insertion efficiency factor TMO_2714 PF00825 Ribonuclease P TMO_2715 PF00468 Ribosomal protein L34 TMO_2717 PF00690 Cation transporter/ATPase, N-terminus TMO_2717 PF00689 Cation transporting ATPase, C-terminus TMO_2718 PF09335 SNARE associated Golgi protein TMO_2719 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TMO_2719 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_2720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_2720 PF00672 HAMP domain TMO_2720 PF00512 His Kinase A (phospho-acceptor) domain TMO_2721 PF01596 O-methyltransferase TMO_2723 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_2723 PF00005 ABC transporter TMO_2724 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_2725 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2728 PF00005 ABC transporter TMO_2729 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2730 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2733 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2733 PF03466 LysR substrate binding domain TMO_2734 PF01297 Zinc-uptake complex component A periplasmic TMO_2735 PF00005 ABC transporter TMO_2736 PF00950 ABC 3 transport family TMO_2737 PF00950 ABC 3 transport family TMO_2738 PF00196 Bacterial regulatory proteins, luxR family TMO_2738 PF00072 Response regulator receiver domain TMO_2739 PF00672 HAMP domain TMO_2739 PF16527 Two-component sensor protein CpxA, periplasmic domain TMO_2739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_2739 PF00512 His Kinase A (phospho-acceptor) domain TMO_2743 PF01921 tRNA synthetases class I (K) TMO_2746 PF01351 Ribonuclease HII TMO_2747 PF01555 DNA methylase TMO_2747 PF18755 Restriction Enzyme Adenine Methylase Associated TMO_2749 PF14815 NUDIX domain TMO_2749 PF00633 Helix-hairpin-helix motif TMO_2749 PF00730 HhH-GPD superfamily base excision DNA repair protein TMO_2750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2750 PF03466 LysR substrate binding domain TMO_2753 PF03795 YCII-related domain TMO_2754 PF04542 Sigma-70 region 2 TMO_2754 PF08281 Sigma-70, region 4 TMO_2756 PF06965 Na+/H+ antiporter 1 TMO_2756 PF13462 Thioredoxin TMO_2757 PF02463 RecF/RecN/SMC N terminal domain TMO_2758 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TMO_2759 PF02514 CobN/Magnesium Chelatase TMO_2760 PF07683 Cobalamin synthesis protein cobW C-terminal domain TMO_2760 PF02492 CobW/HypB/UreG, nucleotide-binding domain TMO_2761 PF00593 TonB dependent receptor TMO_2761 PF07715 TonB-dependent Receptor Plug Domain TMO_2764 PF01152 Bacterial-like globin TMO_2765 PF07883 Cupin domain TMO_2766 PF00892 EamA-like transporter family TMO_2767 PF07685 CobB/CobQ-like glutamine amidotransferase domain TMO_2767 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TMO_2768 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TMO_2769 PF01888 CbiD TMO_2770 PF02571 Precorrin-6x reductase CbiJ/CobK TMO_2771 PF04955 HupE / UreJ protein TMO_2772 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TMO_2773 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TMO_2774 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TMO_2775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TMO_2776 PF02570 Precorrin-8X methylmutase TMO_2777 PF01903 CbiX TMO_2779 PF00119 ATP synthase A chain TMO_2780 PF00137 ATP synthase subunit C TMO_2781 PF00430 ATP synthase B/B' CF(0) TMO_2782 PF00430 ATP synthase B/B' CF(0) TMO_2783 PF07228 Stage II sporulation protein E (SpoIIE) TMO_2783 PF00672 HAMP domain TMO_2787 PF00266 Aminotransferase class-V TMO_2788 PF02347 Glycine cleavage system P-protein TMO_2789 PF01597 Glycine cleavage H-protein TMO_2790 PF01571 Aminomethyltransferase folate-binding domain TMO_2790 PF08669 Glycine cleavage T-protein C-terminal barrel domain TMO_2793 PF02401 LytB protein TMO_2794 PF01636 Phosphotransferase enzyme family TMO_2795 PF00075 RNase H TMO_2797 PF08534 Redoxin TMO_2798 PF02683 Cytochrome C biogenesis protein transmembrane region TMO_2798 PF11412 Disulphide bond corrector protein DsbC TMO_2798 PF13098 Thioredoxin-like domain TMO_2799 PF02622 Uncharacterized ACR, COG1678 TMO_2801 PF13302 Acetyltransferase (GNAT) domain TMO_2802 PF01206 Sulfurtransferase TusA TMO_2803 PF00675 Insulinase (Peptidase family M16) TMO_2803 PF05193 Peptidase M16 inactive domain TMO_2804 PF14821 Threonine synthase N terminus TMO_2804 PF00291 Pyridoxal-phosphate dependent enzyme TMO_2805 PF02074 Carboxypeptidase Taq (M32) metallopeptidase TMO_2806 PF02628 Cytochrome oxidase assembly protein TMO_2807 PF02104 SURF1 family TMO_2809 PF00510 Cytochrome c oxidase subunit III TMO_2810 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 TMO_2812 PF01040 UbiA prenyltransferase family TMO_2813 PF00115 Cytochrome C and Quinol oxidase polypeptide I TMO_2814 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TMO_2814 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TMO_2815 PF01523 Putative modulator of DNA gyrase TMO_2817 PF16868 NMT1-like family TMO_2818 PF05853 beta-keto acid cleavage enzyme TMO_2820 PF00202 Aminotransferase class-III TMO_2822 PF04452 RNA methyltransferase TMO_2823 PF01040 UbiA prenyltransferase family TMO_2825 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TMO_2829 PF01523 Putative modulator of DNA gyrase TMO_2830 PF00459 Inositol monophosphatase family TMO_2831 PF00664 ABC transporter transmembrane region TMO_2831 PF00005 ABC transporter TMO_2833 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) TMO_2834 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TMO_2838 PF01425 Amidase TMO_2842 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2843 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2844 PF08402 TOBE domain TMO_2844 PF00005 ABC transporter TMO_2846 PF01047 MarR family TMO_2847 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_2848 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2849 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2849 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_2850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_2850 PF00005 ABC transporter TMO_2851 PF00330 Aconitase family (aconitate hydratase) TMO_2859 PF05853 beta-keto acid cleavage enzyme TMO_2860 PF00202 Aminotransferase class-III TMO_2862 PF00005 ABC transporter TMO_2865 PF00497 Bacterial extracellular solute-binding proteins, family 3 TMO_2866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2866 PF03466 LysR substrate binding domain TMO_2867 PF13533 Biotin-lipoyl like TMO_2869 PF12833 Helix-turn-helix domain TMO_2869 PF07883 Cupin domain TMO_2870 PF00364 Biotin-requiring enzyme TMO_2870 PF00561 alpha/beta hydrolase fold TMO_2871 PF03741 Integral membrane protein TerC family TMO_2872 PF01476 LysM domain TMO_2872 PF01551 Peptidase family M23 TMO_2873 PF02601 Exonuclease VII, large subunit TMO_2873 PF13742 OB-fold nucleic acid binding domain TMO_2874 PF02843 Phosphoribosylglycinamide synthetase, C domain TMO_2874 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TMO_2874 PF02844 Phosphoribosylglycinamide synthetase, N domain TMO_2875 PF13677 Membrane MotB of proton-channel complex MotA/MotB TMO_2875 PF00691 OmpA family TMO_2876 PF01618 MotA/TolQ/ExbB proton channel family TMO_2877 PF14437 MafB19-like deaminase TMO_2878 PF07722 Peptidase C26 TMO_2879 PF00849 RNA pseudouridylate synthase TMO_2879 PF01479 S4 domain TMO_2882 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_2885 PF01119 DNA mismatch repair protein, C-terminal domain TMO_2885 PF08676 MutL C terminal dimerisation domain TMO_2886 PF00342 Phosphoglucose isomerase TMO_2887 PF05193 Peptidase M16 inactive domain TMO_2888 PF05193 Peptidase M16 inactive domain TMO_2888 PF00675 Insulinase (Peptidase family M16) TMO_2890 PF01252 Signal peptidase (SPase) II TMO_2891 PF00133 tRNA synthetases class I (I, L, M and V) TMO_2891 PF08264 Anticodon-binding domain of tRNA TMO_2891 PF06827 Zinc finger found in FPG and IleRS TMO_2892 PF01687 Riboflavin kinase TMO_2892 PF06574 FAD synthetase TMO_2893 PF01575 MaoC like domain TMO_2894 PF00561 alpha/beta hydrolase fold TMO_2896 PF03956 Lysine exporter LysO TMO_2897 PF08240 Alcohol dehydrogenase GroES-like domain TMO_2897 PF14765 Polyketide synthase dehydratase TMO_2897 PF00550 Phosphopantetheine attachment site TMO_2897 PF08659 KR domain TMO_2897 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_2897 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_2897 PF16197 Ketoacyl-synthetase C-terminal extension TMO_2897 PF09277 Erythronolide synthase, docking TMO_2897 PF00698 Acyl transferase domain TMO_2897 PF08990 Erythronolide synthase docking TMO_2899 PF07690 Major Facilitator Superfamily TMO_2900 PF13533 Biotin-lipoyl like TMO_2906 PF00005 ABC transporter TMO_2906 PF08402 TOBE domain TMO_2907 PF01266 FAD dependent oxidoreductase TMO_2909 PF00557 Metallopeptidase family M24 TMO_2911 PF00672 HAMP domain TMO_2911 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_2912 PF12729 Four helix bundle sensory module for signal transduction TMO_2912 PF00672 HAMP domain TMO_2912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_2915 PF06751 Ethanolamine ammonia lyase large subunit (EutB) TMO_2916 PF05985 Ethanolamine ammonia-lyase light chain (EutC) TMO_2917 PF06224 Winged helix DNA-binding domain TMO_2918 PF08450 SMP-30/Gluconolactonase/LRE-like region TMO_2920 PF00005 ABC transporter TMO_2921 PF01032 FecCD transport family TMO_2924 PF00593 TonB dependent receptor TMO_2924 PF07715 TonB-dependent Receptor Plug Domain TMO_2925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_2925 PF03466 LysR substrate binding domain TMO_2926 PF00158 Sigma-54 interaction domain TMO_2926 PF02954 Bacterial regulatory protein, Fis family TMO_2926 PF00072 Response regulator receiver domain TMO_2927 PF07730 Histidine kinase TMO_2931 PF00107 Zinc-binding dehydrogenase TMO_2931 PF08240 Alcohol dehydrogenase GroES-like domain TMO_2933 PF01590 GAF domain TMO_2933 PF00158 Sigma-54 interaction domain TMO_2933 PF02954 Bacterial regulatory protein, Fis family TMO_2934 PF00005 ABC transporter TMO_2935 PF02361 Cobalt transport protein TMO_2937 PF02553 Cobalt transport protein component CbiN TMO_2938 PF01891 Cobalt uptake substrate-specific transmembrane region TMO_2939 PF03795 YCII-related domain TMO_2943 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_2943 PF00175 Oxidoreductase NAD-binding domain TMO_2943 PF00970 Oxidoreductase FAD-binding domain TMO_2947 PF08713 DNA alkylation repair enzyme TMO_2948 PF05962 HutD TMO_2949 PF17392 Urocanase C-terminal domain TMO_2949 PF01175 Urocanase Rossmann-like domain TMO_2949 PF17391 Urocanase N-terminal domain TMO_2950 PF00221 Aromatic amino acid lyase TMO_2951 PF00571 CBS domain TMO_2951 PF00005 ABC transporter TMO_2952 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2954 PF07702 UTRA domain TMO_2954 PF00392 Bacterial regulatory proteins, gntR family TMO_2955 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_2956 PF01037 Lrp/AsnC ligand binding domain TMO_2958 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TMO_2958 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TMO_2962 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TMO_2963 PF00857 Isochorismatase family TMO_2964 PF02311 AraC-like ligand binding domain TMO_2964 PF12833 Helix-turn-helix domain TMO_2965 PF00829 Ribosomal prokaryotic L21 protein TMO_2966 PF01016 Ribosomal L27 protein TMO_2967 PF01018 GTP1/OBG TMO_2967 PF01926 50S ribosome-binding GTPase TMO_2968 PF01472 PUA domain TMO_2968 PF00696 Amino acid kinase family TMO_2969 PF00171 Aldehyde dehydrogenase family TMO_2970 PF01467 Cytidylyltransferase-like TMO_2972 PF02590 Predicted SPOUT methyltransferase TMO_2973 PF01613 Flavin reductase like domain TMO_2974 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TMO_2974 PF01676 Metalloenzyme superfamily TMO_2975 PF01551 Peptidase family M23 TMO_2976 PF03572 Peptidase family S41 TMO_2976 PF13180 PDZ domain TMO_2978 PF00293 NUDIX domain TMO_2980 PF00528 Binding-protein-dependent transport system inner membrane component TMO_2981 PF00005 ABC transporter TMO_2981 PF03459 TOBE domain TMO_2984 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TMO_2985 PF02874 ATP synthase alpha/beta family, beta-barrel domain TMO_2985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TMO_2986 PF00231 ATP synthase TMO_2987 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TMO_2987 PF00306 ATP synthase alpha/beta chain, C terminal domain TMO_2987 PF02874 ATP synthase alpha/beta family, beta-barrel domain TMO_2988 PF00213 ATP synthase delta (OSCP) subunit TMO_2989 PF00270 DEAD/DEAH box helicase TMO_2989 PF17764 3′ DNA-binding domain (3′BD) TMO_2989 PF18074 Primosomal protein N C-terminal domain TMO_2989 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TMO_2990 PF00923 Transaldolase/Fructose-6-phosphate aldolase TMO_2992 PF02899 Phage integrase, N-terminal SAM-like domain TMO_2992 PF00589 Phage integrase family TMO_2993 PF00394 Multicopper oxidase TMO_2993 PF07731 Multicopper oxidase TMO_2993 PF07732 Multicopper oxidase TMO_2995 PF13545 Crp-like helix-turn-helix domain TMO_2995 PF00027 Cyclic nucleotide-binding domain TMO_2997 PF00005 ABC transporter TMO_3001 PF08281 Sigma-70, region 4 TMO_3001 PF04542 Sigma-70 region 2 TMO_3004 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_3004 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TMO_3005 PF02817 e3 binding domain TMO_3005 PF00364 Biotin-requiring enzyme TMO_3005 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TMO_3006 PF02779 Transketolase, pyrimidine binding domain TMO_3006 PF16870 2-oxoglutarate dehydrogenase C-terminal TMO_3006 PF00676 Dehydrogenase E1 component TMO_3006 PF16078 2-oxoglutarate dehydrogenase N-terminus TMO_3007 PF00549 CoA-ligase TMO_3007 PF02629 CoA binding domain TMO_3008 PF08442 ATP-grasp domain TMO_3008 PF00549 CoA-ligase TMO_3009 PF00056 lactate/malate dehydrogenase, NAD binding domain TMO_3009 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TMO_3010 PF03969 AFG1-like ATPase TMO_3012 PF02774 Semialdehyde dehydrogenase, dimerisation domain TMO_3012 PF01118 Semialdehyde dehydrogenase, NAD binding domain TMO_3015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_3015 PF00005 ABC transporter TMO_3016 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_3016 PF00005 ABC transporter TMO_3017 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_3017 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3018 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3019 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_3020 PF13409 Glutathione S-transferase, N-terminal domain TMO_3021 PF03358 NADPH-dependent FMN reductase TMO_3022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_3022 PF03466 LysR substrate binding domain TMO_3025 PF00310 Glutamine amidotransferases class-II TMO_3025 PF04898 Glutamate synthase central domain TMO_3025 PF01493 GXGXG motif TMO_3025 PF01645 Conserved region in glutamate synthase TMO_3026 PF01113 Dihydrodipicolinate reductase, N-terminus TMO_3026 PF05173 Dihydrodipicolinate reductase, C-terminus TMO_3028 PF00285 Citrate synthase, C-terminal domain TMO_3030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TMO_3030 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TMO_3033 PF01230 HIT domain TMO_3034 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_3035 PF00849 RNA pseudouridylate synthase TMO_3036 PF01042 Endoribonuclease L-PSP TMO_3037 PF00293 NUDIX domain TMO_3038 PF00848 Ring hydroxylating alpha subunit (catalytic domain) TMO_3038 PF00355 Rieske [2Fe-2S] domain TMO_3040 PF16363 GDP-mannose 4,6 dehydratase TMO_3041 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TMO_3043 PF01266 FAD dependent oxidoreductase TMO_3044 PF00378 Enoyl-CoA hydratase/isomerase TMO_3049 PF00561 alpha/beta hydrolase fold TMO_3050 PF01435 Peptidase family M48 TMO_3053 PF00140 Sigma-70 factor, region 1.2 TMO_3053 PF04542 Sigma-70 region 2 TMO_3053 PF04545 Sigma-70, region 4 TMO_3055 PF00037 4Fe-4S binding domain TMO_3055 PF11953 Domain of unknown function (DUF3470) TMO_3056 PF01479 S4 domain TMO_3058 PF00183 Hsp90 protein TMO_3060 PF00330 Aconitase family (aconitate hydratase) TMO_3060 PF00694 Aconitase C-terminal domain TMO_3061 PF00330 Aconitase family (aconitate hydratase) TMO_3061 PF00694 Aconitase C-terminal domain TMO_3062 PF00005 ABC transporter TMO_3062 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_3063 PF00501 AMP-binding enzyme TMO_3064 PF02653 Branched-chain amino acid transport system / permease component TMO_3067 PF00005 ABC transporter TMO_3069 PF03737 Aldolase/RraA TMO_3070 PF00920 Dehydratase family TMO_3072 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_3074 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_3075 PF00392 Bacterial regulatory proteins, gntR family TMO_3075 PF07729 FCD domain TMO_3077 PF00005 ABC transporter TMO_3078 PF03379 CcmB protein TMO_3079 PF01578 Cytochrome C assembly protein TMO_3081 PF03100 CcmE TMO_3082 PF01578 Cytochrome C assembly protein TMO_3082 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TMO_3083 PF08534 Redoxin TMO_3084 PF03918 Cytochrome C biogenesis protein TMO_3086 PF00005 ABC transporter TMO_3088 PF00497 Bacterial extracellular solute-binding proteins, family 3 TMO_3089 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3090 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3092 PF02653 Branched-chain amino acid transport system / permease component TMO_3093 PF02653 Branched-chain amino acid transport system / permease component TMO_3094 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_3094 PF00005 ABC transporter TMO_3095 PF00005 ABC transporter TMO_3096 PF13458 Periplasmic binding protein TMO_3097 PF14489 QueF-like protein TMO_3098 PF02325 YGGT family TMO_3099 PF02594 Uncharacterised ACR, YggU family COG1872 TMO_3100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TMO_3100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TMO_3104 PF03435 Saccharopine dehydrogenase NADP binding domain TMO_3104 PF16653 Saccharopine dehydrogenase C-terminal domain TMO_3105 PF00764 Arginosuccinate synthase TMO_3107 PF00072 Response regulator receiver domain TMO_3107 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_3108 PF13417 Glutathione S-transferase, N-terminal domain TMO_3108 PF00043 Glutathione S-transferase, C-terminal domain TMO_3109 PF16123 Hydroxyacylglutathione hydrolase C-terminus TMO_3109 PF00753 Metallo-beta-lactamase superfamily TMO_3110 PF04055 Radical SAM superfamily TMO_3110 PF13186 Iron-sulfur cluster-binding domain TMO_3112 PF03070 TENA/THI-4/PQQC family TMO_3113 PF12706 Beta-lactamase superfamily domain TMO_3115 PF04055 Radical SAM superfamily TMO_3117 PF01027 Inhibitor of apoptosis-promoting Bax1 TMO_3118 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_3120 PF02142 MGS-like domain TMO_3120 PF01808 AICARFT/IMPCHase bienzyme TMO_3124 PF05088 Bacterial NAD-glutamate dehydrogenase TMO_3126 PF01494 FAD binding domain TMO_3127 PF01047 MarR family TMO_3129 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_3131 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_3133 PF00085 Thioredoxin TMO_3135 PF03966 Trm112p-like protein TMO_3137 PF01494 FAD binding domain TMO_3138 PF00543 Nitrogen regulatory protein P-II TMO_3139 PF00909 Ammonium Transporter Family TMO_3140 PF00155 Aminotransferase class I and II TMO_3141 PF09397 Ftsk gamma domain TMO_3141 PF17854 FtsK alpha domain TMO_3141 PF01580 FtsK/SpoIIIE family TMO_3141 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TMO_3144 PF07722 Peptidase C26 TMO_3146 PF01235 Sodium:alanine symporter family TMO_3148 PF02630 SCO1/SenC TMO_3149 PF03186 CobD/Cbib protein TMO_3151 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TMO_3152 PF00300 Histidine phosphatase superfamily (branch 1) TMO_3153 PF02654 Cobalamin-5-phosphate synthase TMO_3154 PF02277 Phosphoribosyltransferase TMO_3156 PF04545 Sigma-70, region 4 TMO_3156 PF04542 Sigma-70 region 2 TMO_3157 PF12973 ChrR Cupin-like domain TMO_3159 PF01144 Coenzyme A transferase TMO_3160 PF01144 Coenzyme A transferase TMO_3163 PF00106 short chain dehydrogenase TMO_3164 PF01329 Pterin 4 alpha carbinolamine dehydratase TMO_3168 PF00749 tRNA synthetases class I (E and Q), catalytic domain TMO_3169 PF00682 HMGL-like TMO_3169 PF07836 DmpG-like communication domain TMO_3171 PF01063 Amino-transferase class IV TMO_3173 PF03737 Aldolase/RraA TMO_3174 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_3174 PF00512 His Kinase A (phospho-acceptor) domain TMO_3174 PF17149 Periplasmic sensor domain found in signal transduction proteins TMO_3174 PF00672 HAMP domain TMO_3174 PF00072 Response regulator receiver domain TMO_3174 PF01627 Hpt domain TMO_3177 PF02581 Thiamine monophosphate synthase TMO_3178 PF02110 Hydroxyethylthiazole kinase family TMO_3180 PF02600 Disulfide bond formation protein DsbB TMO_3181 PF16868 NMT1-like family TMO_3182 PF02789 Cytosol aminopeptidase family, N-terminal domain TMO_3182 PF00883 Cytosol aminopeptidase family, catalytic domain TMO_3184 PF12833 Helix-turn-helix domain TMO_3184 PF06029 AlkA N-terminal domain TMO_3184 PF02805 Metal binding domain of Ada TMO_3184 PF00730 HhH-GPD superfamily base excision DNA repair protein TMO_3185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_3185 PF00005 ABC transporter TMO_3186 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3186 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_3187 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3188 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_3189 PF00459 Inositol monophosphatase family TMO_3190 PF00034 Cytochrome c TMO_3191 PF02348 Cytidylyltransferase TMO_3192 PF01842 ACT domain TMO_3192 PF01817 Chorismate mutase type II TMO_3192 PF00800 Prephenate dehydratase TMO_3193 PF00893 Small Multidrug Resistance protein TMO_3194 PF08671 Anti-repressor SinI TMO_3194 PF01381 Helix-turn-helix TMO_3197 PF00005 ABC transporter TMO_3198 PF13472 GDSL-like Lipase/Acylhydrolase family TMO_3200 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_3201 PF02515 CoA-transferase family III TMO_3202 PF00682 HMGL-like TMO_3203 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_3203 PF03466 LysR substrate binding domain TMO_3205 PF12697 Alpha/beta hydrolase family TMO_3209 PF00005 ABC transporter TMO_3211 PF01612 3'-5' exonuclease TMO_3211 PF00476 DNA polymerase family A TMO_3211 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TMO_3211 PF01367 5'-3' exonuclease, C-terminal SAM fold TMO_3217 PF00011 Hsp20/alpha crystallin family TMO_3219 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TMO_3220 PF02224 Cytidylate kinase TMO_3221 PF00575 S1 RNA binding domain TMO_3223 PF16347 Domain of unknown function (DUF4976) TMO_3223 PF00884 Sulfatase TMO_3225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_3225 PF03466 LysR substrate binding domain TMO_3226 PF13416 Bacterial extracellular solute-binding protein TMO_3227 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3228 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3229 PF01343 Peptidase family S49 TMO_3230 PF00216 Bacterial DNA-binding protein TMO_3232 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TMO_3233 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMO_3234 PF00291 Pyridoxal-phosphate dependent enzyme TMO_3235 PF00290 Tryptophan synthase alpha chain TMO_3236 PF01039 Carboxyl transferase domain TMO_3237 PF02875 Mur ligase family, glutamate ligase domain TMO_3237 PF08245 Mur ligase middle domain TMO_3238 PF00561 alpha/beta hydrolase fold TMO_3241 PF00085 Thioredoxin TMO_3242 PF13361 UvrD-like helicase C-terminal domain TMO_3242 PF00580 UvrD/REP helicase N-terminal domain TMO_3242 PF12705 PD-(D/E)XK nuclease superfamily TMO_3243 PF12705 PD-(D/E)XK nuclease superfamily TMO_3244 PF12804 MobA-like NTP transferase domain TMO_3245 PF01636 Phosphotransferase enzyme family TMO_3246 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TMO_3247 PF02881 SRP54-type protein, helical bundle domain TMO_3247 PF00448 SRP54-type protein, GTPase domain TMO_3247 PF02978 Signal peptide binding domain TMO_3248 PF00886 Ribosomal protein S16 TMO_3249 PF01782 RimM N-terminal domain TMO_3249 PF05239 PRC-barrel domain TMO_3250 PF01746 tRNA (Guanine-1)-methyltransferase TMO_3251 PF01245 Ribosomal protein L19 TMO_3252 PF00330 Aconitase family (aconitate hydratase) TMO_3253 PF00694 Aconitase C-terminal domain TMO_3254 PF00180 Isocitrate/isopropylmalate dehydrogenase TMO_3255 PF02774 Semialdehyde dehydrogenase, dimerisation domain TMO_3255 PF01118 Semialdehyde dehydrogenase, NAD binding domain TMO_3256 PF13640 2OG-Fe(II) oxygenase superfamily TMO_3256 PF18331 PKHD-type hydroxylase C-terminal domain TMO_3260 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_3262 PF00378 Enoyl-CoA hydratase/isomerase TMO_3263 PF00583 Acetyltransferase (GNAT) family TMO_3263 PF13380 CoA binding domain TMO_3263 PF13607 Succinyl-CoA ligase like flavodoxin domain TMO_3264 PF13607 Succinyl-CoA ligase like flavodoxin domain TMO_3264 PF00583 Acetyltransferase (GNAT) family TMO_3264 PF13380 CoA binding domain TMO_3265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_3265 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_3265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_3266 PF13520 Amino acid permease TMO_3268 PF08892 YqcI/YcgG family TMO_3270 PF08543 Phosphomethylpyrimidine kinase TMO_3271 PF03328 HpcH/HpaI aldolase/citrate lyase family TMO_3272 PF01575 MaoC like domain TMO_3273 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TMO_3274 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TMO_3275 PF02910 Fumarate reductase flavoprotein C-term TMO_3275 PF00890 FAD binding domain TMO_3276 PF13085 2Fe-2S iron-sulfur cluster binding domain TMO_3277 PF00005 ABC transporter TMO_3277 PF00664 ABC transporter transmembrane region TMO_3278 PF00664 ABC transporter transmembrane region TMO_3278 PF00005 ABC transporter TMO_3278 PF04954 Siderophore-interacting protein TMO_3278 PF08021 Siderophore-interacting FAD-binding domain TMO_3280 PF00593 TonB dependent receptor TMO_3280 PF07715 TonB-dependent Receptor Plug Domain TMO_3283 PF06906 Protein of unknown function (DUF1272) TMO_3284 PF00012 Hsp70 protein TMO_3285 PF01168 Alanine racemase, N-terminal domain TMO_3290 PF00535 Glycosyl transferase family 2 TMO_3295 PF03466 LysR substrate binding domain TMO_3295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_3296 PF02567 Phenazine biosynthesis-like protein TMO_3299 PF03466 LysR substrate binding domain TMO_3299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_3300 PF02254 TrkA-N domain TMO_3300 PF00999 Sodium/hydrogen exchanger family TMO_3301 PF00484 Carbonic anhydrase TMO_3302 PF03009 Glycerophosphoryl diester phosphodiesterase family TMO_3303 PF13416 Bacterial extracellular solute-binding protein TMO_3304 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3305 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3306 PF08402 TOBE domain TMO_3306 PF00005 ABC transporter TMO_3307 PF00924 Mechanosensitive ion channel TMO_3307 PF05552 Conserved TM helix TMO_3309 PF03060 Nitronate monooxygenase TMO_3310 PF03060 Nitronate monooxygenase TMO_3311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_3311 PF03466 LysR substrate binding domain TMO_3313 PF02230 Phospholipase/Carboxylesterase TMO_3315 PF01914 MarC family integral membrane protein TMO_3316 PF02541 Ppx/GppA phosphatase family TMO_3317 PF13090 Polyphosphate kinase C-terminal domain 2 TMO_3317 PF17941 Polyphosphate kinase C-terminal domain 1 TMO_3317 PF02503 Polyphosphate kinase middle domain TMO_3317 PF13089 Polyphosphate kinase N-terminal domain TMO_3320 PF00464 Serine hydroxymethyltransferase TMO_3321 PF00202 Aminotransferase class-III TMO_3322 PF03594 Benzoate membrane transport protein TMO_3323 PF00392 Bacterial regulatory proteins, gntR family TMO_3323 PF00155 Aminotransferase class I and II TMO_3324 PF03009 Glycerophosphoryl diester phosphodiesterase family TMO_3325 PF13607 Succinyl-CoA ligase like flavodoxin domain TMO_3325 PF00583 Acetyltransferase (GNAT) family TMO_3325 PF13380 CoA binding domain TMO_3328 PF01180 Dihydroorotate dehydrogenase TMO_3330 PF01546 Peptidase family M20/M25/M40 TMO_3330 PF07687 Peptidase dimerisation domain TMO_3331 PF02386 Cation transport protein TMO_3332 PF01227 GTP cyclohydrolase I TMO_3333 PF04379 ApaG domain TMO_3334 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_3335 PF00005 ABC transporter TMO_3337 PF13416 Bacterial extracellular solute-binding protein TMO_3341 PF00180 Isocitrate/isopropylmalate dehydrogenase TMO_3341 PF18324 Hypothetical protein TT1725 TMO_3343 PF02727 Copper amine oxidase, N2 domain TMO_3343 PF01179 Copper amine oxidase, enzyme domain TMO_3343 PF02728 Copper amine oxidase, N3 domain TMO_3345 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term TMO_3345 PF12833 Helix-turn-helix domain TMO_3346 PF03372 Endonuclease/Exonuclease/phosphatase family TMO_3347 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_3348 PF07724 AAA domain (Cdc48 subfamily) TMO_3348 PF00004 ATPase family associated with various cellular activities (AAA) TMO_3348 PF10431 C-terminal, D2-small domain, of ClpB protein TMO_3349 PF00227 Proteasome subunit TMO_3350 PF05977 Transmembrane secretion effector TMO_3352 PF00561 alpha/beta hydrolase fold TMO_3354 PF00892 EamA-like transporter family TMO_3356 PF00155 Aminotransferase class I and II TMO_3356 PF00392 Bacterial regulatory proteins, gntR family TMO_3358 PF00475 Imidazoleglycerol-phosphate dehydratase TMO_3360 PF00117 Glutamine amidotransferase class-I TMO_3361 PF00977 Histidine biosynthesis protein TMO_3362 PF00977 Histidine biosynthesis protein TMO_3363 PF01502 Phosphoribosyl-AMP cyclohydrolase TMO_3364 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TMO_3365 PF01230 HIT domain TMO_3367 PF05035 2-keto-3-deoxy-galactonokinase TMO_3368 PF01081 KDPG and KHG aldolase TMO_3371 PF00034 Cytochrome c TMO_3371 PF03150 Di-haem cytochrome c peroxidase TMO_3373 PF07715 TonB-dependent Receptor Plug Domain TMO_3373 PF00593 TonB dependent receptor TMO_3377 PF12852 Cupin TMO_3377 PF12833 Helix-turn-helix domain TMO_3378 PF07690 Major Facilitator Superfamily TMO_3382 PF02589 LUD domain TMO_3383 PF11870 Domain of unknown function (DUF3390) TMO_3383 PF02589 LUD domain TMO_3383 PF13183 4Fe-4S dicluster domain TMO_3384 PF02754 Cysteine-rich domain TMO_3385 PF06725 3D domain TMO_3385 PF03562 MltA specific insert domain TMO_3386 PF00067 Cytochrome P450 TMO_3389 PF13537 Glutamine amidotransferase domain TMO_3389 PF00733 Asparagine synthase TMO_3392 PF00067 Cytochrome P450 TMO_3395 PF04186 FxsA cytoplasmic membrane protein TMO_3396 PF02556 Preprotein translocase subunit SecB TMO_3397 PF03466 LysR substrate binding domain TMO_3397 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_3398 PF05368 NmrA-like family TMO_3399 PF00905 Penicillin binding protein transpeptidase domain TMO_3400 PF00929 Exonuclease TMO_3401 PF01121 Dephospho-CoA kinase TMO_3402 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TMO_3402 PF08501 Shikimate dehydrogenase substrate binding domain TMO_3402 PF01488 Shikimate / quinate 5-dehydrogenase TMO_3403 PF02545 Maf-like protein TMO_3404 PF03618 Kinase/pyrophosphorylase TMO_3405 PF01208 Uroporphyrinogen decarboxylase (URO-D) TMO_3406 PF00762 Ferrochelatase TMO_3408 PF07497 Rho termination factor, RNA-binding domain TMO_3408 PF07498 Rho termination factor, N-terminal domain TMO_3408 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TMO_3409 PF08240 Alcohol dehydrogenase GroES-like domain TMO_3409 PF00107 Zinc-binding dehydrogenase TMO_3410 PF01738 Dienelactone hydrolase family TMO_3411 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TMO_3411 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TMO_3412 PF03190 Protein of unknown function, DUF255 TMO_3415 PF12631 MnmE helical domain TMO_3415 PF10396 GTP-binding protein TrmE N-terminus TMO_3415 PF01926 50S ribosome-binding GTPase TMO_3416 PF01134 Glucose inhibited division protein A TMO_3416 PF13932 GidA associated domain TMO_3417 PF02527 rRNA small subunit methyltransferase G TMO_3418 PF13614 AAA domain TMO_3419 PF02195 ParB-like nuclease domain TMO_3419 PF17762 HTH domain found in ParB protein TMO_3422 PF13603 Leucyl-tRNA synthetase, Domain 2 TMO_3422 PF00133 tRNA synthetases class I (I, L, M and V) TMO_3422 PF08264 Anticodon-binding domain of tRNA TMO_3423 PF12100 Domain of unknown function (DUF3576) TMO_3426 PF13609 Gram-negative porin TMO_3429 PF01168 Alanine racemase, N-terminal domain TMO_3432 PF00925 GTP cyclohydrolase II TMO_3435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TMO_3435 PF01872 RibD C-terminal domain TMO_3436 PF08240 Alcohol dehydrogenase GroES-like domain TMO_3436 PF00107 Zinc-binding dehydrogenase TMO_3438 PF11380 Stealth protein CR2, conserved region 2 TMO_3438 PF17102 Stealth protein CR3, conserved region 3 TMO_3438 PF17101 Stealth protein CR1, conserved region 1 TMO_3438 PF17103 Stealth protein CR4, conserved region 4 TMO_3438 PF00534 Glycosyl transferases group 1 TMO_3440 PF00072 Response regulator receiver domain TMO_3440 PF00486 Transcriptional regulatory protein, C terminal TMO_3441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_3441 PF03466 LysR substrate binding domain TMO_3444 PF00378 Enoyl-CoA hydratase/isomerase TMO_3445 PF01381 Helix-turn-helix TMO_3446 PF01078 Magnesium chelatase, subunit ChlI TMO_3446 PF13335 Magnesium chelatase, subunit ChlI C-terminal TMO_3448 PF10576 Iron-sulfur binding domain of endonuclease III TMO_3448 PF00633 Helix-hairpin-helix motif TMO_3448 PF00730 HhH-GPD superfamily base excision DNA repair protein TMO_3450 PF00719 Inorganic pyrophosphatase TMO_3451 PF07690 Major Facilitator Superfamily TMO_3453 PF00294 pfkB family carbohydrate kinase TMO_3458 PF07702 UTRA domain TMO_3458 PF00392 Bacterial regulatory proteins, gntR family TMO_3459 PF00107 Zinc-binding dehydrogenase TMO_3459 PF08240 Alcohol dehydrogenase GroES-like domain TMO_3460 PF00756 Putative esterase TMO_3461 PF01381 Helix-turn-helix TMO_3462 PF03960 ArsC family TMO_3463 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TMO_3463 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TMO_3464 PF13369 Transglutaminase-like superfamily TMO_3466 PF02021 Uncharacterised protein family UPF0102 TMO_3467 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TMO_3469 PF04055 Radical SAM superfamily TMO_3469 PF06969 HemN C-terminal domain TMO_3470 PF01725 Ham1 family TMO_3471 PF01138 3' exoribonuclease family, domain 1 TMO_3471 PF03725 3' exoribonuclease family, domain 2 TMO_3472 PF01628 HrcA protein C terminal domain TMO_3473 PF01025 GrpE TMO_3474 PF00012 Hsp70 protein TMO_3475 PF01556 DnaJ C terminal domain TMO_3475 PF00226 DnaJ domain TMO_3475 PF00684 DnaJ central domain TMO_3476 PF01113 Dihydrodipicolinate reductase, N-terminus TMO_3476 PF05173 Dihydrodipicolinate reductase, C-terminus TMO_3477 PF00892 EamA-like transporter family TMO_3478 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus TMO_3478 PF00561 alpha/beta hydrolase fold TMO_3480 PF13533 Biotin-lipoyl like TMO_3481 PF00005 ABC transporter TMO_3483 PF07804 HipA-like C-terminal domain TMO_3483 PF13657 HipA N-terminal domain TMO_3485 PF00149 Calcineurin-like phosphoesterase TMO_3486 PF12857 TOBE-like domain TMO_3486 PF00005 ABC transporter TMO_3488 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3490 PF00356 Bacterial regulatory proteins, lacI family TMO_3491 PF03023 Lipid II flippase MurJ TMO_3492 PF08335 GlnD PII-uridylyltransferase TMO_3492 PF01909 Nucleotidyltransferase domain TMO_3492 PF01966 HD domain TMO_3493 PF03180 NLPA lipoprotein TMO_3494 PF03180 NLPA lipoprotein TMO_3495 PF00672 HAMP domain TMO_3495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_3496 PF07859 alpha/beta hydrolase fold TMO_3498 PF09924 Uncharacterised conserved protein (DUF2156) TMO_3498 PF03706 Lysylphosphatidylglycerol synthase TM region TMO_3500 PF13193 AMP-binding enzyme C-terminal domain TMO_3500 PF00501 AMP-binding enzyme TMO_3501 PF05188 MutS domain II TMO_3501 PF05192 MutS domain III TMO_3501 PF05190 MutS family domain IV TMO_3501 PF00488 MutS domain V TMO_3501 PF01624 MutS domain I TMO_3502 PF01515 Phosphate acetyl/butaryl transferase TMO_3502 PF03949 Malic enzyme, NAD binding domain TMO_3502 PF00390 Malic enzyme, N-terminal domain TMO_3503 PF00512 His Kinase A (phospho-acceptor) domain TMO_3503 PF16736 Single Cache-like TMO_3503 PF00989 PAS fold TMO_3503 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_3504 PF00501 AMP-binding enzyme TMO_3504 PF13193 AMP-binding enzyme C-terminal domain TMO_3505 PF12849 PBP superfamily domain TMO_3506 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3507 PF00528 Binding-protein-dependent transport system inner membrane component TMO_3508 PF00005 ABC transporter TMO_3509 PF01895 PhoU domain TMO_3510 PF00486 Transcriptional regulatory protein, C terminal TMO_3510 PF00072 Response regulator receiver domain TMO_3511 PF01810 LysE type translocator TMO_3512 PF00579 tRNA synthetases class I (W and Y) TMO_3513 PF01925 Sulfite exporter TauE/SafE TMO_3516 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_3516 PF00672 HAMP domain TMO_3517 PF00376 MerR family regulatory protein TMO_3517 PF09278 MerR, DNA binding TMO_3519 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_3520 PF00873 AcrB/AcrD/AcrF family TMO_3521 PF01106 NifU-like domain TMO_3522 PF00781 Diacylglycerol kinase catalytic domain TMO_3525 PF00814 Glycoprotease family TMO_3526 PF00583 Acetyltransferase (GNAT) family TMO_3526 PF00814 Glycoprotease family TMO_3527 PF05443 ROS/MUCR transcriptional regulator protein TMO_3528 PF01475 Ferric uptake regulator family TMO_3531 PF01938 TRAM domain TMO_3531 PF00919 Uncharacterized protein family UPF0004 TMO_3531 PF04055 Radical SAM superfamily TMO_3532 PF02562 PhoH-like protein TMO_3533 PF02130 Uncharacterized protein family UPF0054 TMO_3534 PF03471 Transporter associated domain TMO_3534 PF00571 CBS domain TMO_3535 PF00795 Carbon-nitrogen hydrolase TMO_3536 PF01381 Helix-turn-helix TMO_3537 PF02773 S-adenosylmethionine synthetase, C-terminal domain TMO_3537 PF00438 S-adenosylmethionine synthetase, N-terminal domain TMO_3537 PF02772 S-adenosylmethionine synthetase, central domain TMO_3538 PF02390 Putative methyltransferase TMO_3539 PF02576 RimP N-terminal domain TMO_3539 PF17384 RimP C-terminal SH3 domain TMO_3540 PF13184 NusA-like KH domain TMO_3540 PF00575 S1 RNA binding domain TMO_3540 PF08529 NusA N-terminal domain TMO_3542 PF00009 Elongation factor Tu GTP binding domain TMO_3542 PF08364 Bacterial translation initiation factor IF-2 associated region TMO_3542 PF03144 Elongation factor Tu domain 2 TMO_3542 PF11987 Translation-initiation factor 2 TMO_3542 PF04760 Translation initiation factor IF-2, N-terminal region TMO_3543 PF02033 Ribosome-binding factor A TMO_3544 PF16198 tRNA pseudouridylate synthase B C-terminal domain TMO_3544 PF01509 TruB family pseudouridylate synthase (N terminal domain) TMO_3544 PF09157 Pseudouridine synthase II TruB, C-terminal TMO_3545 PF00312 Ribosomal protein S15 TMO_3546 PF00575 S1 RNA binding domain TMO_3546 PF00013 KH domain TMO_3546 PF01138 3' exoribonuclease family, domain 1 TMO_3546 PF03725 3' exoribonuclease family, domain 2 TMO_3546 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TMO_3551 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TMO_3551 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TMO_3554 PF00899 ThiF family TMO_3555 PF00291 Pyridoxal-phosphate dependent enzyme TMO_3556 PF02082 Transcriptional regulator TMO_3557 PF00692 dUTPase TMO_3558 PF02441 Flavoprotein TMO_3558 PF04127 DNA / pantothenate metabolism flavoprotein TMO_3559 PF03109 ABC1 family TMO_3560 PF01209 ubiE/COQ5 methyltransferase family TMO_3561 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TMO_3561 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TMO_3563 PF00378 Enoyl-CoA hydratase/isomerase TMO_3564 PF01649 Ribosomal protein S20 TMO_a0001 PF00668 Condensation domain TMO_a0001 PF00550 Phosphopantetheine attachment site TMO_a0001 PF00975 Thioesterase domain TMO_a0001 PF13193 AMP-binding enzyme C-terminal domain TMO_a0001 PF00501 AMP-binding enzyme TMO_a0004 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TMO_a0005 PF05016 ParE toxin of type II toxin-antitoxin system, parDE TMO_a0011 PF02423 Ornithine cyclodeaminase/mu-crystallin family TMO_a0012 PF00491 Arginase family TMO_a0015 PF01979 Amidohydrolase family TMO_a0016 PF02492 CobW/HypB/UreG, nucleotide-binding domain TMO_a0016 PF07683 Cobalamin synthesis protein cobW C-terminal domain TMO_a0022 PF01266 FAD dependent oxidoreductase TMO_a0023 PF00005 ABC transporter TMO_a0023 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_a0024 PF00528 Binding-protein-dependent transport system inner membrane component TMO_a0025 PF00528 Binding-protein-dependent transport system inner membrane component TMO_a0026 PF00528 Binding-protein-dependent transport system inner membrane component TMO_a0027 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_a0028 PF16527 Two-component sensor protein CpxA, periplasmic domain TMO_a0028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_a0028 PF00672 HAMP domain TMO_a0028 PF00512 His Kinase A (phospho-acceptor) domain TMO_a0029 PF00072 Response regulator receiver domain TMO_a0029 PF00486 Transcriptional regulatory protein, C terminal TMO_a0030 PF01569 PAP2 superfamily TMO_a0034 PF03781 Sulfatase-modifying factor enzyme 1 TMO_a0034 PF12867 DinB superfamily TMO_a0035 PF10017 Histidine-specific methyltransferase, SAM-dependent TMO_a0049 PF01037 Lrp/AsnC ligand binding domain TMO_a0051 PF02515 CoA-transferase family III TMO_a0052 PF06055 Exopolysaccharide synthesis, ExoD TMO_a0053 PF13188 PAS domain TMO_a0053 PF03707 Bacterial signalling protein N terminal repeat TMO_a0053 PF00990 Diguanylate cyclase, GGDEF domain TMO_a0053 PF00563 EAL domain TMO_a0054 PF01161 Phosphatidylethanolamine-binding protein TMO_a0056 PF00459 Inositol monophosphatase family TMO_a0068 PF04717 Type VI secretion system, phage-baseplate injector TMO_a0070 PF03781 Sulfatase-modifying factor enzyme 1 TMO_a0072 PF00005 ABC transporter TMO_a0074 PF00069 Protein kinase domain TMO_a0078 PF00691 OmpA family TMO_a0078 PF05736 OprF membrane domain TMO_a0082 PF00004 ATPase family associated with various cellular activities (AAA) TMO_a0082 PF17871 AAA lid domain TMO_a0082 PF07724 AAA domain (Cdc48 subfamily) TMO_a0082 PF10431 C-terminal, D2-small domain, of ClpB protein TMO_a0095 PF04717 Type VI secretion system, phage-baseplate injector TMO_a0098 PF05593 RHS Repeat TMO_a0098 PF03527 RHS protein TMO_a0105 PF09722 Protein of unknown function (DUF2384) TMO_a0107 PF00128 Alpha amylase, catalytic domain TMO_a0108 PF07859 alpha/beta hydrolase fold TMO_a0111 PF07690 Major Facilitator Superfamily TMO_a0116 PF05016 ParE toxin of type II toxin-antitoxin system, parDE TMO_a0118 PF00664 ABC transporter transmembrane region TMO_a0118 PF00005 ABC transporter TMO_a0119 PF01032 FecCD transport family TMO_a0120 PF01032 FecCD transport family TMO_a0122 PF00005 ABC transporter TMO_a0123 PF07715 TonB-dependent Receptor Plug Domain TMO_a0123 PF00593 TonB dependent receptor TMO_a0124 PF14525 AraC-binding-like domain TMO_a0124 PF12833 Helix-turn-helix domain TMO_a0125 PF04405 Domain of Unknown function (DUF542) TMO_a0125 PF01814 Hemerythrin HHE cation binding domain TMO_a0127 PF00005 ABC transporter TMO_a0127 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_a0128 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_a0128 PF00005 ABC transporter TMO_a0130 PF00528 Binding-protein-dependent transport system inner membrane component TMO_a0131 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_a0132 PF08028 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0132 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0132 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0133 PF00296 Luciferase-like monooxygenase TMO_a0134 PF03466 LysR substrate binding domain TMO_a0134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_a0136 PF00561 alpha/beta hydrolase fold TMO_a0138 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0138 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0138 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0140 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0142 PF07015 VirC1 protein TMO_a0146 PF03079 ARD/ARD' family TMO_a0147 PF00596 Class II Aldolase and Adducin N-terminal domain TMO_a0152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_a0152 PF02743 Cache domain TMO_a0152 PF00512 His Kinase A (phospho-acceptor) domain TMO_a0153 PF00158 Sigma-54 interaction domain TMO_a0153 PF00072 Response regulator receiver domain TMO_a0153 PF02954 Bacterial regulatory protein, Fis family TMO_a0156 PF01039 Carboxyl transferase domain TMO_a0158 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_a0158 PF02785 Biotin carboxylase C-terminal domain TMO_a0158 PF00289 Biotin carboxylase, N-terminal domain TMO_a0160 PF01575 MaoC like domain TMO_a0162 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0162 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0162 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0163 PF00005 ABC transporter TMO_a0165 PF11862 Domain of unknown function (DUF3382) TMO_a0165 PF02653 Branched-chain amino acid transport system / permease component TMO_a0166 PF02653 Branched-chain amino acid transport system / permease component TMO_a0167 PF00501 AMP-binding enzyme TMO_a0168 PF00005 ABC transporter TMO_a0168 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_a0169 PF17934 Tetracyclin repressor-like, C-terminal domain TMO_a0169 PF00440 Bacterial regulatory proteins, tetR family TMO_a0171 PF08361 MAATS-type transcriptional repressor, C-terminal region TMO_a0171 PF00440 Bacterial regulatory proteins, tetR family TMO_a0173 PF01593 Flavin containing amine oxidoreductase TMO_a0174 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_a0174 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TMO_a0176 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_a0180 PF01370 NAD dependent epimerase/dehydratase family TMO_a0181 PF00171 Aldehyde dehydrogenase family TMO_a0185 PF03466 LysR substrate binding domain TMO_a0185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_a0188 PF02322 Cytochrome bd terminal oxidase subunit II TMO_a0189 PF01654 Cytochrome bd terminal oxidase subunit I TMO_a0190 PF00664 ABC transporter transmembrane region TMO_a0190 PF00005 ABC transporter TMO_a0191 PF00005 ABC transporter TMO_a0191 PF00664 ABC transporter transmembrane region TMO_a0193 PF00672 HAMP domain TMO_a0193 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_a0195 PF00106 short chain dehydrogenase TMO_a0196 PF01209 ubiE/COQ5 methyltransferase family TMO_a0199 PF12833 Helix-turn-helix domain TMO_a0203 PF01850 PIN domain TMO_a0206 PF00512 His Kinase A (phospho-acceptor) domain TMO_a0206 PF01627 Hpt domain TMO_a0206 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TMO_a0206 PF00672 HAMP domain TMO_a0206 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_a0206 PF00072 Response regulator receiver domain TMO_a0207 PF00916 Sulfate permease family TMO_a0207 PF01740 STAS domain TMO_a0211 PF02446 4-alpha-glucanotransferase TMO_a0212 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TMO_a0212 PF00128 Alpha amylase, catalytic domain TMO_a0213 PF00128 Alpha amylase, catalytic domain TMO_a0213 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TMO_a0213 PF02806 Alpha amylase, C-terminal all-beta domain TMO_a0214 PF00128 Alpha amylase, catalytic domain TMO_a0214 PF16657 Maltogenic Amylase, C-terminal domain TMO_a0215 PF00128 Alpha amylase, catalytic domain TMO_a0215 PF11896 Domain of unknown function (DUF3416) TMO_a0219 PF02358 Trehalose-phosphatase TMO_a0220 PF00982 Glycosyltransferase family 20 TMO_a0221 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_a0223 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_a0224 PF00368 Hydroxymethylglutaryl-coenzyme A reductase TMO_a0225 PF00155 Aminotransferase class I and II TMO_a0225 PF00392 Bacterial regulatory proteins, gntR family TMO_a0226 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term TMO_a0226 PF12833 Helix-turn-helix domain TMO_a0228 PF02653 Branched-chain amino acid transport system / permease component TMO_a0230 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_a0230 PF00005 ABC transporter TMO_a0231 PF00005 ABC transporter TMO_a0232 PF00108 Thiolase, N-terminal domain TMO_a0232 PF02803 Thiolase, C-terminal domain TMO_a0233 PF13193 AMP-binding enzyme C-terminal domain TMO_a0233 PF00501 AMP-binding enzyme TMO_a0234 PF13193 AMP-binding enzyme C-terminal domain TMO_a0234 PF00501 AMP-binding enzyme TMO_a0243 PF00672 HAMP domain TMO_a0243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_a0243 PF00512 His Kinase A (phospho-acceptor) domain TMO_a0243 PF01627 Hpt domain TMO_a0243 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TMO_a0243 PF00072 Response regulator receiver domain TMO_a0244 PF00107 Zinc-binding dehydrogenase TMO_a0244 PF08240 Alcohol dehydrogenase GroES-like domain TMO_a0245 PF02653 Branched-chain amino acid transport system / permease component TMO_a0246 PF02653 Branched-chain amino acid transport system / permease component TMO_a0247 PF00005 ABC transporter TMO_a0248 PF13407 Periplasmic binding protein domain TMO_a0250 PF08450 SMP-30/Gluconolactonase/LRE-like region TMO_a0251 PF00171 Aldehyde dehydrogenase family TMO_a0252 PF00171 Aldehyde dehydrogenase family TMO_a0253 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TMO_a0254 PF00920 Dehydratase family TMO_a0256 PF02653 Branched-chain amino acid transport system / permease component TMO_a0257 PF00005 ABC transporter TMO_a0258 PF13407 Periplasmic binding protein domain TMO_a0259 PF03466 LysR substrate binding domain TMO_a0259 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_a0261 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_a0261 PF03466 LysR substrate binding domain TMO_a0262 PF08240 Alcohol dehydrogenase GroES-like domain TMO_a0262 PF00107 Zinc-binding dehydrogenase TMO_a0265 PF17925 Tetracyclin repressor-like, C-terminal domain TMO_a0265 PF00440 Bacterial regulatory proteins, tetR family TMO_a0267 PF07690 Major Facilitator Superfamily TMO_a0269 PF00873 AcrB/AcrD/AcrF family TMO_a0271 PF00440 Bacterial regulatory proteins, tetR family TMO_a0272 PF00106 short chain dehydrogenase TMO_a0273 PF13192 Thioredoxin domain TMO_a0273 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_a0274 PF02082 Transcriptional regulator TMO_a0278 PF01227 GTP cyclohydrolase I TMO_a0283 PF00392 Bacterial regulatory proteins, gntR family TMO_a0283 PF07729 FCD domain TMO_a0284 PF02515 CoA-transferase family III TMO_a0285 PF00682 HMGL-like TMO_a0287 PF00857 Isochorismatase family TMO_a0288 PF03466 LysR substrate binding domain TMO_a0288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_a0289 PF00248 Aldo/keto reductase family TMO_a0295 PF02653 Branched-chain amino acid transport system / permease component TMO_a0297 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_a0297 PF00005 ABC transporter TMO_a0298 PF00005 ABC transporter TMO_a0299 PF04909 Amidohydrolase TMO_a0300 PF02515 CoA-transferase family III TMO_a0302 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TMO_a0303 PF00924 Mechanosensitive ion channel TMO_a0304 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TMO_a0304 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TMO_a0305 PF03450 CO dehydrogenase flavoprotein C-terminal domain TMO_a0305 PF00941 FAD binding domain in molybdopterin dehydrogenase TMO_a0306 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_a0306 PF01799 [2Fe-2S] binding domain TMO_a0309 PF00313 'Cold-shock' DNA-binding domain TMO_a0310 PF00313 'Cold-shock' DNA-binding domain TMO_a0311 PF13298 DNA polymerase Ligase (LigD) TMO_a0311 PF01068 ATP dependent DNA ligase domain TMO_a0311 PF04679 ATP dependent DNA ligase C terminal region TMO_a0312 PF02735 Ku70/Ku80 beta-barrel domain TMO_a0314 PF01566 Natural resistance-associated macrophage protein TMO_a0314 PF03358 NADPH-dependent FMN reductase TMO_a0317 PF08003 Protein of unknown function (DUF1698) TMO_a0319 PF16363 GDP-mannose 4,6 dehydratase TMO_a0324 PF04055 Radical SAM superfamily TMO_a0324 PF02310 B12 binding domain TMO_a0325 PF16363 GDP-mannose 4,6 dehydratase TMO_a0326 PF01370 NAD dependent epimerase/dehydratase family TMO_a0327 PF08281 Sigma-70, region 4 TMO_a0327 PF04542 Sigma-70 region 2 TMO_a0332 PF00115 Cytochrome C and Quinol oxidase polypeptide I TMO_a0334 PF01011 PQQ enzyme repeat TMO_a0340 PF00171 Aldehyde dehydrogenase family TMO_a0341 PF00005 ABC transporter TMO_a0341 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_a0342 PF00528 Binding-protein-dependent transport system inner membrane component TMO_a0342 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_a0343 PF00528 Binding-protein-dependent transport system inner membrane component TMO_a0345 PF00202 Aminotransferase class-III TMO_a0347 PF01425 Amidase TMO_a0349 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_a0350 PF00872 Transposase, Mutator family TMO_a0351 PF00872 Transposase, Mutator family TMO_a0357 PF18766 SWI2/SNF2 ATPase TMO_a0357 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TMO_a0357 PF12008 Type I restriction and modification enzyme - subunit R C terminal TMO_a0360 PF12161 HsdM N-terminal domain TMO_a0360 PF02384 N-6 DNA Methylase TMO_a0361 PF13276 HTH-like domain TMO_a0361 PF13333 Integrase core domain TMO_a0361 PF00665 Integrase core domain TMO_a0362 PF00589 Phage integrase family TMO_a0362 PF02899 Phage integrase, N-terminal SAM-like domain TMO_a0370 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) TMO_a0372 PF08401 Domain of unknown function (DUF1738) TMO_a0372 PF18818 Metallopeptidase superfamily domain TMO_a0373 PF01609 Transposase DDE domain TMO_a0373 PF13808 DDE_Tnp_1-associated TMO_a0374 PF07015 VirC1 protein TMO_a0377 PF14310 Fibronectin type III-like domain TMO_a0377 PF01915 Glycosyl hydrolase family 3 C-terminal domain TMO_a0377 PF00933 Glycosyl hydrolase family 3 N terminal domain TMO_a0378 PF17645 Arylmalonate decarboxylase TMO_a0379 PF18665 Tetracyclin repressor-like, C-terminal domain TMO_a0379 PF00440 Bacterial regulatory proteins, tetR family TMO_a0384 PF01494 FAD binding domain TMO_a0385 PF13193 AMP-binding enzyme C-terminal domain TMO_a0385 PF00501 AMP-binding enzyme TMO_a0386 PF00440 Bacterial regulatory proteins, tetR family TMO_a0386 PF18665 Tetracyclin repressor-like, C-terminal domain TMO_a0387 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_a0389 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_a0393 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TMO_a0395 PF00440 Bacterial regulatory proteins, tetR family TMO_a0396 PF00890 FAD binding domain TMO_a0396 PF14537 Cytochrome c3 TMO_a0397 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TMO_a0398 PF00392 Bacterial regulatory proteins, gntR family TMO_a0398 PF07702 UTRA domain TMO_a0399 PF13458 Periplasmic binding protein TMO_a0400 PF02653 Branched-chain amino acid transport system / permease component TMO_a0401 PF02653 Branched-chain amino acid transport system / permease component TMO_a0401 PF11862 Domain of unknown function (DUF3382) TMO_a0402 PF00005 ABC transporter TMO_a0402 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_a0403 PF00005 ABC transporter TMO_a0407 PF00890 FAD binding domain TMO_a0407 PF14537 Cytochrome c3 TMO_a0414 PF01425 Amidase TMO_a0415 PF00005 ABC transporter TMO_a0416 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_a0416 PF00005 ABC transporter TMO_a0419 PF13458 Periplasmic binding protein TMO_a0420 PF00392 Bacterial regulatory proteins, gntR family TMO_a0420 PF07729 FCD domain TMO_a0426 PF03062 MBOAT, membrane-bound O-acyltransferase family TMO_a0433 PF18146 Damage-inducible protein CinA KH domain TMO_a0433 PF00994 Probable molybdopterin binding domain TMO_a0433 PF02464 Competence-damaged protein TMO_a0434 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain TMO_a0434 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain TMO_a0435 PF00732 GMC oxidoreductase TMO_a0435 PF05199 GMC oxidoreductase TMO_a0437 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TMO_a0438 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_a0439 PF03972 MmgE/PrpD family TMO_a0440 PF01575 MaoC like domain TMO_a0441 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0441 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0441 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0443 PF02515 CoA-transferase family III TMO_a0444 PF03328 HpcH/HpaI aldolase/citrate lyase family TMO_a0447 PF00378 Enoyl-CoA hydratase/isomerase TMO_a0451 PF00043 Glutathione S-transferase, C-terminal domain TMO_a0451 PF02798 Glutathione S-transferase, N-terminal domain TMO_a0452 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0452 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0452 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0453 PF02785 Biotin carboxylase C-terminal domain TMO_a0453 PF00364 Biotin-requiring enzyme TMO_a0453 PF00289 Biotin carboxylase, N-terminal domain TMO_a0453 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_a0454 PF01039 Carboxyl transferase domain TMO_a0459 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) TMO_a0459 PF06594 Haemolysin-type calcium binding protein related domain TMO_a0462 PF00378 Enoyl-CoA hydratase/isomerase TMO_a0464 PF00501 AMP-binding enzyme TMO_a0464 PF13193 AMP-binding enzyme C-terminal domain TMO_a0466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_a0466 PF00512 His Kinase A (phospho-acceptor) domain TMO_a0466 PF00989 PAS fold TMO_a0467 PF02694 Uncharacterised BCR, YnfA/UPF0060 family TMO_a0470 PF00072 Response regulator receiver domain TMO_a0470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_a0470 PF01627 Hpt domain TMO_a0470 PF00672 HAMP domain TMO_a0470 PF00512 His Kinase A (phospho-acceptor) domain TMO_a0471 PF00072 Response regulator receiver domain TMO_a0471 PF00990 Diguanylate cyclase, GGDEF domain TMO_a0483 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TMO_a0483 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TMO_a0486 PF04989 Cephalosporin hydroxylase TMO_a0487 PF05711 Macrocin-O-methyltransferase (TylF) TMO_a0493 PF03328 HpcH/HpaI aldolase/citrate lyase family TMO_a0494 PF05853 beta-keto acid cleavage enzyme TMO_a0496 PF02653 Branched-chain amino acid transport system / permease component TMO_a0497 PF00005 ABC transporter TMO_a0498 PF00005 ABC transporter TMO_a0498 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_a0500 PF13193 AMP-binding enzyme C-terminal domain TMO_a0500 PF00501 AMP-binding enzyme TMO_a0501 PF13452 N-terminal half of MaoC dehydratase TMO_a0502 PF00106 short chain dehydrogenase TMO_a0503 PF00378 Enoyl-CoA hydratase/isomerase TMO_a0504 PF01047 MarR family TMO_a0507 PF00378 Enoyl-CoA hydratase/isomerase TMO_a0509 PF00501 AMP-binding enzyme TMO_a0509 PF13193 AMP-binding enzyme C-terminal domain TMO_a0510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0510 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0511 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0511 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0511 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0512 PF00501 AMP-binding enzyme TMO_a0512 PF13193 AMP-binding enzyme C-terminal domain TMO_a0515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_a0516 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0516 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0516 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0519 PF02515 CoA-transferase family III TMO_a0520 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_a0520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_a0520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_a0521 PF00378 Enoyl-CoA hydratase/isomerase TMO_a0522 PF12833 Helix-turn-helix domain TMO_a0522 PF02311 AraC-like ligand binding domain TMO_a0524 PF00501 AMP-binding enzyme TMO_a0524 PF13193 AMP-binding enzyme C-terminal domain TMO_a0525 PF00378 Enoyl-CoA hydratase/isomerase TMO_a0526 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TMO_a0530 PF00106 short chain dehydrogenase TMO_a0531 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_a0531 PF03466 LysR substrate binding domain TMO_a0532 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_a0535 PF00072 Response regulator receiver domain TMO_a0535 PF00196 Bacterial regulatory proteins, luxR family TMO_a0537 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_a0540 PF00378 Enoyl-CoA hydratase/isomerase TMO_a0541 PF12561 ToxR activated gene A lipoprotein domain TMO_a0541 PF00041 Fibronectin type III domain TMO_a0542 PF00501 AMP-binding enzyme TMO_a0542 PF13193 AMP-binding enzyme C-terminal domain TMO_a0550 PF07690 Major Facilitator Superfamily TMO_a0551 PF07883 Cupin domain TMO_a0552 PF00355 Rieske [2Fe-2S] domain TMO_a0553 PF13577 SnoaL-like domain TMO_a0554 PF00355 Rieske [2Fe-2S] domain TMO_a0554 PF00848 Ring hydroxylating alpha subunit (catalytic domain) TMO_a0555 PF14759 Reductase C-terminal TMO_a0555 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_a0557 PF13417 Glutathione S-transferase, N-terminal domain TMO_a0558 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_a0560 PF00171 Aldehyde dehydrogenase family TMO_a0567 PF07687 Peptidase dimerisation domain TMO_a0567 PF01546 Peptidase family M20/M25/M40 TMO_a0570 PF00501 AMP-binding enzyme TMO_a0570 PF13193 AMP-binding enzyme C-terminal domain TMO_a0573 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_a0577 PF04773 FecR protein TMO_a0577 PF16220 Domain of unknown function (DUF4880) TMO_a0578 PF08281 Sigma-70, region 4 TMO_a0578 PF04542 Sigma-70 region 2 TMO_a0581 PF00733 Asparagine synthase TMO_a0581 PF00733 Asparagine synthase TMO_a0581 PF13537 Glutamine amidotransferase domain TMO_a0581 PF13537 Glutamine amidotransferase domain TMO_a0582 PF01804 Penicillin amidase TMO_a0583 PF00378 Enoyl-CoA hydratase/isomerase TMO_a0587 PF03062 MBOAT, membrane-bound O-acyltransferase family TMO_a0591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_a0591 PF03466 LysR substrate binding domain TMO_a0593 PF04221 RelB antitoxin TMO_a0598 PF07804 HipA-like C-terminal domain TMO_a0598 PF13657 HipA N-terminal domain TMO_a0599 PF01381 Helix-turn-helix TMO_a0600 PF06628 Catalase-related immune-responsive TMO_a0600 PF18011 C-terminal domain found in long catalases TMO_a0600 PF00199 Catalase TMO_a0601 PF00571 CBS domain TMO_a0602 PF03167 Uracil DNA glycosylase superfamily TMO_a0603 PF00501 AMP-binding enzyme TMO_a0603 PF13193 AMP-binding enzyme C-terminal domain TMO_a0603 PF13193 AMP-binding enzyme C-terminal domain TMO_a0603 PF00668 Condensation domain TMO_a0603 PF00550 Phosphopantetheine attachment site TMO_a0603 PF00668 Condensation domain TMO_a0603 PF00501 AMP-binding enzyme TMO_a0603 PF00975 Thioesterase domain TMO_a0603 PF00975 Thioesterase domain TMO_a0603 PF00550 Phosphopantetheine attachment site TMO_b0001 PF08240 Alcohol dehydrogenase GroES-like domain TMO_b0001 PF13823 Alcohol dehydrogenase GroES-associated TMO_b0001 PF00107 Zinc-binding dehydrogenase TMO_b0008 PF17482 Phage tail sheath C-terminal domain TMO_b0008 PF04984 Phage tail sheath protein subtilisin-like domain TMO_b0019 PF00909 Ammonium Transporter Family TMO_b0020 PF02668 Taurine catabolism dioxygenase TauD, TfdA family TMO_b0021 PF00596 Class II Aldolase and Adducin N-terminal domain TMO_b0022 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0023 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0024 PF00005 ABC transporter TMO_b0025 PF09084 NMT1/THI5 like TMO_b0027 PF00392 Bacterial regulatory proteins, gntR family TMO_b0027 PF07729 FCD domain TMO_b0028 PF00072 Response regulator receiver domain TMO_b0028 PF01627 Hpt domain TMO_b0028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_b0028 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TMO_b0028 PF00672 HAMP domain TMO_b0028 PF00512 His Kinase A (phospho-acceptor) domain TMO_b0029 PF00072 Response regulator receiver domain TMO_b0030 PF07690 Major Facilitator Superfamily TMO_b0031 PF03466 LysR substrate binding domain TMO_b0031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0032 PF01740 STAS domain TMO_b0032 PF00916 Sulfate permease family TMO_b0035 PF00440 Bacterial regulatory proteins, tetR family TMO_b0036 PF00005 ABC transporter TMO_b0036 PF00664 ABC transporter transmembrane region TMO_b0040 PF00005 ABC transporter TMO_b0040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_b0041 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_b0041 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0042 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0047 PF01425 Amidase TMO_b0048 PF13533 Biotin-lipoyl like TMO_b0051 PF12833 Helix-turn-helix domain TMO_b0051 PF02311 AraC-like ligand binding domain TMO_b0057 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0058 PF00005 ABC transporter TMO_b0059 PF13378 Enolase C-terminal domain-like TMO_b0059 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TMO_b0060 PF01266 FAD dependent oxidoreductase TMO_b0061 PF00205 Thiamine pyrophosphate enzyme, central domain TMO_b0061 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TMO_b0061 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TMO_b0062 PF03466 LysR substrate binding domain TMO_b0062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0065 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_b0066 PF01554 MatE TMO_b0068 PF00873 AcrB/AcrD/AcrF family TMO_b0074 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0075 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_b0076 PF00501 AMP-binding enzyme TMO_b0076 PF13193 AMP-binding enzyme C-terminal domain TMO_b0077 PF00378 Enoyl-CoA hydratase/isomerase TMO_b0080 PF00593 TonB dependent receptor TMO_b0080 PF07715 TonB-dependent Receptor Plug Domain TMO_b0081 PF11806 Domain of unknown function (DUF3327) TMO_b0081 PF00756 Putative esterase TMO_b0083 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0083 PF03466 LysR substrate binding domain TMO_b0086 PF07729 FCD domain TMO_b0086 PF00392 Bacterial regulatory proteins, gntR family TMO_b0087 PF00701 Dihydrodipicolinate synthetase family TMO_b0090 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0091 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0092 PF00005 ABC transporter TMO_b0093 PF01266 FAD dependent oxidoreductase TMO_b0094 PF05544 Proline racemase TMO_b0096 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0097 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_b0100 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0101 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0102 PF00005 ABC transporter TMO_b0102 PF17912 MalK OB fold domain TMO_b0103 PF17912 MalK OB fold domain TMO_b0103 PF00005 ABC transporter TMO_b0104 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TMO_b0104 PF01266 FAD dependent oxidoreductase TMO_b0107 PF02322 Cytochrome bd terminal oxidase subunit II TMO_b0108 PF01654 Cytochrome bd terminal oxidase subunit I TMO_b0109 PF00501 AMP-binding enzyme TMO_b0109 PF13193 AMP-binding enzyme C-terminal domain TMO_b0112 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0113 PF00561 alpha/beta hydrolase fold TMO_b0115 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TMO_b0117 PF00848 Ring hydroxylating alpha subunit (catalytic domain) TMO_b0117 PF00355 Rieske [2Fe-2S] domain TMO_b0119 PF00106 short chain dehydrogenase TMO_b0121 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_b0122 PF01118 Semialdehyde dehydrogenase, NAD binding domain TMO_b0122 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation TMO_b0123 PF07836 DmpG-like communication domain TMO_b0123 PF00682 HMGL-like TMO_b0125 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_b0125 PF14759 Reductase C-terminal TMO_b0127 PF17158 Membrane-associated sensor, integral membrane domain TMO_b0127 PF00990 Diguanylate cyclase, GGDEF domain TMO_b0129 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_b0129 PF00512 His Kinase A (phospho-acceptor) domain TMO_b0129 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TMO_b0129 PF00672 HAMP domain TMO_b0129 PF00072 Response regulator receiver domain TMO_b0129 PF01627 Hpt domain TMO_b0136 PF01810 LysE type translocator TMO_b0137 PF13537 Glutamine amidotransferase domain TMO_b0137 PF00733 Asparagine synthase TMO_b0138 PF01209 ubiE/COQ5 methyltransferase family TMO_b0139 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0139 PF03466 LysR substrate binding domain TMO_b0140 PF00005 ABC transporter TMO_b0144 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0145 PF00440 Bacterial regulatory proteins, tetR family TMO_b0145 PF08362 YcdC-like protein, C-terminal region TMO_b0149 PF17954 Quercetinase C-terminal cupin domain TMO_b0149 PF02678 Pirin TMO_b0150 PF00920 Dehydratase family TMO_b0152 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0153 PF00005 ABC transporter TMO_b0154 PF04221 RelB antitoxin TMO_b0156 PF00205 Thiamine pyrophosphate enzyme, central domain TMO_b0156 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TMO_b0156 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TMO_b0157 PF00067 Cytochrome P450 TMO_b0158 PF00080 Copper/zinc superoxide dismutase (SODC) TMO_b0159 PF00884 Sulfatase TMO_b0159 PF16347 Domain of unknown function (DUF4976) TMO_b0161 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0161 PF03466 LysR substrate binding domain TMO_b0162 PF08240 Alcohol dehydrogenase GroES-like domain TMO_b0162 PF00107 Zinc-binding dehydrogenase TMO_b0164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0164 PF03466 LysR substrate binding domain TMO_b0166 PF00440 Bacterial regulatory proteins, tetR family TMO_b0171 PF07702 UTRA domain TMO_b0171 PF00392 Bacterial regulatory proteins, gntR family TMO_b0172 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain TMO_b0172 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain TMO_b0175 PF01425 Amidase TMO_b0176 PF01425 Amidase TMO_b0177 PF09084 NMT1/THI5 like TMO_b0179 PF00155 Aminotransferase class I and II TMO_b0180 PF00561 alpha/beta hydrolase fold TMO_b0181 PF07687 Peptidase dimerisation domain TMO_b0181 PF01546 Peptidase family M20/M25/M40 TMO_b0182 PF07690 Major Facilitator Superfamily TMO_b0187 PF00289 Biotin carboxylase, N-terminal domain TMO_b0187 PF00364 Biotin-requiring enzyme TMO_b0187 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_b0187 PF02785 Biotin carboxylase C-terminal domain TMO_b0187 PF02436 Conserved carboxylase domain TMO_b0187 PF00682 HMGL-like TMO_b0188 PF13193 AMP-binding enzyme C-terminal domain TMO_b0188 PF00501 AMP-binding enzyme TMO_b0189 PF17158 Membrane-associated sensor, integral membrane domain TMO_b0189 PF00990 Diguanylate cyclase, GGDEF domain TMO_b0190 PF00676 Dehydrogenase E1 component TMO_b0190 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal TMO_b0191 PF02779 Transketolase, pyrimidine binding domain TMO_b0191 PF02780 Transketolase, C-terminal domain TMO_b0192 PF02817 e3 binding domain TMO_b0192 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TMO_b0192 PF00364 Biotin-requiring enzyme TMO_b0193 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_b0193 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TMO_b0194 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_b0194 PF01799 [2Fe-2S] binding domain TMO_b0195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TMO_b0196 PF07690 Major Facilitator Superfamily TMO_b0197 PF16925 Tetracyclin repressor-like, C-terminal domain TMO_b0197 PF00440 Bacterial regulatory proteins, tetR family TMO_b0198 PF00857 Isochorismatase family TMO_b0200 PF00005 ABC transporter TMO_b0201 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0205 PF00440 Bacterial regulatory proteins, tetR family TMO_b0206 PF00107 Zinc-binding dehydrogenase TMO_b0206 PF08240 Alcohol dehydrogenase GroES-like domain TMO_b0209 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_b0210 PF00027 Cyclic nucleotide-binding domain TMO_b0210 PF07885 Ion channel TMO_b0214 PF12833 Helix-turn-helix domain TMO_b0214 PF12852 Cupin TMO_b0217 PF00199 Catalase TMO_b0219 PF01032 FecCD transport family TMO_b0220 PF00005 ABC transporter TMO_b0221 PF01497 Periplasmic binding protein TMO_b0222 PF07715 TonB-dependent Receptor Plug Domain TMO_b0222 PF00593 TonB dependent receptor TMO_b0223 PF00486 Transcriptional regulatory protein, C terminal TMO_b0223 PF00072 Response regulator receiver domain TMO_b0225 PF00512 His Kinase A (phospho-acceptor) domain TMO_b0225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_b0225 PF00672 HAMP domain TMO_b0226 PF12833 Helix-turn-helix domain TMO_b0226 PF12852 Cupin TMO_b0228 PF00248 Aldo/keto reductase family TMO_b0229 PF08447 PAS fold TMO_b0229 PF13426 PAS domain TMO_b0229 PF07536 HWE histidine kinase TMO_b0233 PF08361 MAATS-type transcriptional repressor, C-terminal region TMO_b0233 PF00440 Bacterial regulatory proteins, tetR family TMO_b0234 PF13193 AMP-binding enzyme C-terminal domain TMO_b0234 PF00501 AMP-binding enzyme TMO_b0235 PF00005 ABC transporter TMO_b0236 PF00005 ABC transporter TMO_b0236 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_b0238 PF02653 Branched-chain amino acid transport system / permease component TMO_b0239 PF13458 Periplasmic binding protein TMO_b0240 PF00501 AMP-binding enzyme TMO_b0240 PF13193 AMP-binding enzyme C-terminal domain TMO_b0241 PF00378 Enoyl-CoA hydratase/isomerase TMO_b0242 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_b0242 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_b0242 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_b0243 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_b0243 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_b0243 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_b0245 PF13175 AAA ATPase domain TMO_b0246 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TMO_b0249 PF00106 short chain dehydrogenase TMO_b0251 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0257 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_b0257 PF00672 HAMP domain TMO_b0257 PF17200 Single Cache domain 2 TMO_b0258 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TMO_b0260 PF09339 IclR helix-turn-helix domain TMO_b0260 PF01614 Bacterial transcriptional regulator TMO_b0262 PF01425 Amidase TMO_b0263 PF04299 Putative FMN-binding domain TMO_b0264 PF07859 alpha/beta hydrolase fold TMO_b0265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_b0265 PF00005 ABC transporter TMO_b0266 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0267 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0267 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_b0268 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_b0269 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TMO_b0270 PF07883 Cupin domain TMO_b0270 PF12833 Helix-turn-helix domain TMO_b0274 PF02463 RecF/RecN/SMC N terminal domain TMO_b0279 PF13808 DDE_Tnp_1-associated TMO_b0279 PF01609 Transposase DDE domain TMO_b0286 PF00891 O-methyltransferase domain TMO_b0286 PF16864 Dimerisation domain TMO_b0287 PF00248 Aldo/keto reductase family TMO_b0289 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0291 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_b0292 PF00583 Acetyltransferase (GNAT) family TMO_b0292 PF13607 Succinyl-CoA ligase like flavodoxin domain TMO_b0292 PF13380 CoA binding domain TMO_b0293 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_b0293 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_b0293 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_b0294 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_b0294 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_b0294 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_b0296 PF00378 Enoyl-CoA hydratase/isomerase TMO_b0297 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TMO_b0299 PF07690 Major Facilitator Superfamily TMO_b0301 PF00205 Thiamine pyrophosphate enzyme, central domain TMO_b0301 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TMO_b0301 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TMO_b0302 PF00534 Glycosyl transferases group 1 TMO_b0302 PF13439 Glycosyltransferase Family 4 TMO_b0303 PF00512 His Kinase A (phospho-acceptor) domain TMO_b0303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_b0306 PF00929 Exonuclease TMO_b0311 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_b0313 PF00171 Aldehyde dehydrogenase family TMO_b0314 PF03466 LysR substrate binding domain TMO_b0314 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0317 PF01144 Coenzyme A transferase TMO_b0319 PF01144 Coenzyme A transferase TMO_b0320 PF03621 MbtH-like protein TMO_b0321 PF02668 Taurine catabolism dioxygenase TauD, TfdA family TMO_b0323 PF13193 AMP-binding enzyme C-terminal domain TMO_b0323 PF00975 Thioesterase domain TMO_b0323 PF00550 Phosphopantetheine attachment site TMO_b0323 PF00668 Condensation domain TMO_b0323 PF00501 AMP-binding enzyme TMO_b0324 PF00550 Phosphopantetheine attachment site TMO_b0324 PF00668 Condensation domain TMO_b0324 PF13193 AMP-binding enzyme C-terminal domain TMO_b0324 PF00501 AMP-binding enzyme TMO_b0325 PF00501 AMP-binding enzyme TMO_b0325 PF00668 Condensation domain TMO_b0325 PF13193 AMP-binding enzyme C-terminal domain TMO_b0325 PF00550 Phosphopantetheine attachment site TMO_b0327 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) TMO_b0329 PF01804 Penicillin amidase TMO_b0330 PF01804 Penicillin amidase TMO_b0331 PF00593 TonB dependent receptor TMO_b0331 PF07715 TonB-dependent Receptor Plug Domain TMO_b0332 PF00005 ABC transporter TMO_b0333 PF01497 Periplasmic binding protein TMO_b0334 PF01032 FecCD transport family TMO_b0335 PF00005 ABC transporter TMO_b0335 PF00664 ABC transporter transmembrane region TMO_b0341 PF00456 Transketolase, thiamine diphosphate binding domain TMO_b0341 PF17831 Pyruvate dehydrogenase E1 component middle domain TMO_b0342 PF01037 Lrp/AsnC ligand binding domain TMO_b0344 PF00005 ABC transporter TMO_b0345 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0346 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0347 PF12849 PBP superfamily domain TMO_b0351 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0352 PF00005 ABC transporter TMO_b0352 PF08402 TOBE domain TMO_b0353 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0353 PF03466 LysR substrate binding domain TMO_b0354 PF00596 Class II Aldolase and Adducin N-terminal domain TMO_b0355 PF14552 Tautomerase enzyme TMO_b0356 PF03466 LysR substrate binding domain TMO_b0356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0358 PF04542 Sigma-70 region 2 TMO_b0358 PF04539 Sigma-70 region 3 TMO_b0358 PF04545 Sigma-70, region 4 TMO_b0362 PF07475 HPr Serine kinase C-terminal domain TMO_b0362 PF02603 HPr Serine kinase N terminus TMO_b0363 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0366 PF13193 AMP-binding enzyme C-terminal domain TMO_b0366 PF00501 AMP-binding enzyme TMO_b0367 PF00378 Enoyl-CoA hydratase/isomerase TMO_b0368 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_b0368 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_b0368 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_b0369 PF07729 FCD domain TMO_b0369 PF00392 Bacterial regulatory proteins, gntR family TMO_b0370 PF01627 Hpt domain TMO_b0370 PF00512 His Kinase A (phospho-acceptor) domain TMO_b0370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_b0370 PF00672 HAMP domain TMO_b0370 PF00072 Response regulator receiver domain TMO_b0371 PF00072 Response regulator receiver domain TMO_b0371 PF00196 Bacterial regulatory proteins, luxR family TMO_b0372 PF17912 MalK OB fold domain TMO_b0372 PF00005 ABC transporter TMO_b0374 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0376 PF00149 Calcineurin-like phosphoesterase TMO_b0379 PF00005 ABC transporter TMO_b0379 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_b0380 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_b0380 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0381 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0382 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_b0383 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0383 PF03466 LysR substrate binding domain TMO_b0385 PF01425 Amidase TMO_b0387 PF03328 HpcH/HpaI aldolase/citrate lyase family TMO_b0388 PF01575 MaoC like domain TMO_b0391 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_b0391 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_b0391 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_b0392 PF00248 Aldo/keto reductase family TMO_b0395 PF02979 Nitrile hydratase, alpha chain TMO_b0396 PF02211 Nitrile hydratase beta subunit TMO_b0399 PF12802 MarR family TMO_b0401 PF00440 Bacterial regulatory proteins, tetR family TMO_b0402 PF01593 Flavin containing amine oxidoreductase TMO_b0403 PF00171 Aldehyde dehydrogenase family TMO_b0404 PF01425 Amidase TMO_b0405 PF00005 ABC transporter TMO_b0406 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_b0406 PF00005 ABC transporter TMO_b0408 PF02653 Branched-chain amino acid transport system / permease component TMO_b0412 PF00171 Aldehyde dehydrogenase family TMO_b0413 PF03466 LysR substrate binding domain TMO_b0413 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0414 PF00171 Aldehyde dehydrogenase family TMO_b0416 PF08240 Alcohol dehydrogenase GroES-like domain TMO_b0416 PF00107 Zinc-binding dehydrogenase TMO_b0417 PF01022 Bacterial regulatory protein, arsR family TMO_b0419 PF00574 Clp protease TMO_b0420 PF00990 Diguanylate cyclase, GGDEF domain TMO_b0421 PF00171 Aldehyde dehydrogenase family TMO_b0424 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0425 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_b0425 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_b0426 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_b0428 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TMO_b0431 PF00171 Aldehyde dehydrogenase family TMO_b0432 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_b0433 PF03328 HpcH/HpaI aldolase/citrate lyase family TMO_b0434 PF00378 Enoyl-CoA hydratase/isomerase TMO_b0436 PF00501 AMP-binding enzyme TMO_b0436 PF13193 AMP-binding enzyme C-terminal domain TMO_b0437 PF07729 FCD domain TMO_b0437 PF00392 Bacterial regulatory proteins, gntR family TMO_b0438 PF07883 Cupin domain TMO_b0439 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_b0441 PF02653 Branched-chain amino acid transport system / permease component TMO_b0443 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_b0443 PF00005 ABC transporter TMO_b0444 PF00005 ABC transporter TMO_b0445 PF00795 Carbon-nitrogen hydrolase TMO_b0446 PF01613 Flavin reductase like domain TMO_b0450 PF07690 Major Facilitator Superfamily TMO_b0451 PF14710 Respiratory nitrate reductase alpha N-terminal TMO_b0451 PF00384 Molybdopterin oxidoreductase TMO_b0451 PF01568 Molydopterin dinucleotide binding domain TMO_b0452 PF13247 4Fe-4S dicluster domain TMO_b0452 PF14711 Respiratory nitrate reductase beta C-terminal TMO_b0453 PF02613 Nitrate reductase delta subunit TMO_b0454 PF02665 Nitrate reductase gamma subunit TMO_b0455 PF00639 PPIC-type PPIASE domain TMO_b0455 PF09312 SurA N-terminal domain TMO_b0457 PF00994 Probable molybdopterin binding domain TMO_b0457 PF03454 MoeA C-terminal region (domain IV) TMO_b0457 PF03453 MoeA N-terminal region (domain I and II) TMO_b0459 PF04055 Radical SAM superfamily TMO_b0459 PF06463 Molybdenum Cofactor Synthesis C TMO_b0460 PF00994 Probable molybdopterin binding domain TMO_b0462 PF00990 Diguanylate cyclase, GGDEF domain TMO_b0462 PF17151 Periplasmic sensor domain TMO_b0463 PF00990 Diguanylate cyclase, GGDEF domain TMO_b0464 PF00005 ABC transporter TMO_b0465 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0466 PF00497 Bacterial extracellular solute-binding proteins, family 3 TMO_b0467 PF00701 Dihydrodipicolinate synthetase family TMO_b0468 PF02798 Glutathione S-transferase, N-terminal domain TMO_b0469 PF01266 FAD dependent oxidoreductase TMO_b0469 PF05690 Thiazole biosynthesis protein ThiG TMO_b0470 PF01266 FAD dependent oxidoreductase TMO_b0471 PF03466 LysR substrate binding domain TMO_b0471 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0473 PF11862 Domain of unknown function (DUF3382) TMO_b0473 PF02653 Branched-chain amino acid transport system / permease component TMO_b0475 PF00005 ABC transporter TMO_b0476 PF00005 ABC transporter TMO_b0476 PF12857 TOBE-like domain TMO_b0477 PF03069 Acetamidase/Formamidase family TMO_b0480 PF02374 Anion-transporting ATPase TMO_b0480 PF17886 HSP20-like domain found in ArsA TMO_b0483 PF00664 ABC transporter transmembrane region TMO_b0483 PF00005 ABC transporter TMO_b0486 PF01734 Patatin-like phospholipase TMO_b0487 PF03466 LysR substrate binding domain TMO_b0487 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0490 PF01569 PAP2 superfamily TMO_b0491 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0491 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_b0492 PF00528 Binding-protein-dependent transport system inner membrane component TMO_b0493 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_b0494 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_b0494 PF00005 ABC transporter TMO_b0495 PF00005 ABC transporter TMO_b0495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_b0496 PF13193 AMP-binding enzyme C-terminal domain TMO_b0496 PF00501 AMP-binding enzyme TMO_b0502 PF05721 Phytanoyl-CoA dioxygenase (PhyH) TMO_b0503 PF12833 Helix-turn-helix domain TMO_b0504 PF08220 DeoR-like helix-turn-helix domain TMO_b0504 PF00455 DeoR C terminal sensor domain TMO_b0506 PF07690 Major Facilitator Superfamily TMO_b0508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0508 PF03466 LysR substrate binding domain TMO_b0509 PF01638 HxlR-like helix-turn-helix TMO_b0511 PF01323 DSBA-like thioredoxin domain TMO_b0516 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TMO_b0517 PF07729 FCD domain TMO_b0517 PF00392 Bacterial regulatory proteins, gntR family TMO_b0518 PF00485 Phosphoribulokinase / Uridine kinase family TMO_b0519 PF00732 GMC oxidoreductase TMO_b0519 PF05199 GMC oxidoreductase TMO_b0521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0521 PF03466 LysR substrate binding domain TMO_b0522 PF03358 NADPH-dependent FMN reductase TMO_b0524 PF00501 AMP-binding enzyme TMO_b0524 PF13193 AMP-binding enzyme C-terminal domain TMO_b0525 PF00890 FAD binding domain TMO_b0525 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) TMO_b0529 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0531 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH TMO_b0532 PF00924 Mechanosensitive ion channel TMO_b0534 PF00578 AhpC/TSA family TMO_b0534 PF10417 C-terminal domain of 1-Cys peroxiredoxin TMO_b0537 PF06445 GyrI-like small molecule binding domain TMO_b0537 PF12833 Helix-turn-helix domain TMO_b0538 PF07690 Major Facilitator Superfamily TMO_b0540 PF01266 FAD dependent oxidoreductase TMO_b0541 PF04267 Sarcosine oxidase, delta subunit family TMO_b0542 PF08669 Glycine cleavage T-protein C-terminal barrel domain TMO_b0542 PF01571 Aminomethyltransferase folate-binding domain TMO_b0542 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_b0542 PF17806 Sarcosine oxidase A3 domain TMO_b0546 PF00694 Aconitase C-terminal domain TMO_b0547 PF00330 Aconitase family (aconitate hydratase) TMO_b0548 PF02515 CoA-transferase family III TMO_b0549 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_b0549 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_b0549 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_b0551 PF01968 Hydantoinase/oxoprolinase TMO_b0551 PF05378 Hydantoinase/oxoprolinase N-terminal region TMO_b0552 PF02538 Hydantoinase B/oxoprolinase TMO_b0553 PF07702 UTRA domain TMO_b0553 PF00392 Bacterial regulatory proteins, gntR family TMO_b0559 PF00196 Bacterial regulatory proteins, luxR family TMO_b0560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TMO_b0560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TMO_b0561 PF00501 AMP-binding enzyme TMO_b0561 PF13193 AMP-binding enzyme C-terminal domain TMO_b0562 PF00392 Bacterial regulatory proteins, gntR family TMO_b0562 PF07702 UTRA domain TMO_b0566 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_b0569 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_b0569 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_b0569 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_b0572 PF00672 HAMP domain TMO_b0572 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_b0572 PF16591 Helical bimodular sensor domain TMO_b0573 PF00892 EamA-like transporter family TMO_b0574 PF01327 Polypeptide deformylase TMO_b0575 PF00106 short chain dehydrogenase TMO_b0576 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_b0576 PF03466 LysR substrate binding domain TMO_b0577 PF00440 Bacterial regulatory proteins, tetR family TMO_b0581 PF08502 LeuA allosteric (dimerisation) domain TMO_b0581 PF00682 HMGL-like TMO_b0584 PF13188 PAS domain TMO_b0584 PF00989 PAS fold TMO_b0584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_b0584 PF00512 His Kinase A (phospho-acceptor) domain TMO_b0586 PF13614 AAA domain TMO_b0587 PF02195 ParB-like nuclease domain TMO_b0587 PF17762 HTH domain found in ParB protein TMO_b0591 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TMO_b0591 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_b0593 PF12833 Helix-turn-helix domain TMO_b0593 PF01965 DJ-1/PfpI family TMO_b0594 PF12823 Domain of unknown function (DUF3817) TMO_c0001 PF00665 Integrase core domain TMO_c0002 PF01695 IstB-like ATP binding protein TMO_c0005 PF03466 LysR substrate binding domain TMO_c0005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0007 PF05425 Copper resistance protein D TMO_c0008 PF04234 CopC domain TMO_c0011 PF05275 Copper resistance protein B precursor (CopB) TMO_c0012 PF00394 Multicopper oxidase TMO_c0012 PF07731 Multicopper oxidase TMO_c0012 PF07732 Multicopper oxidase TMO_c0013 PF00072 Response regulator receiver domain TMO_c0013 PF00486 Transcriptional regulatory protein, C terminal TMO_c0014 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0014 PF00672 HAMP domain TMO_c0015 PF01022 Bacterial regulatory protein, arsR family TMO_c0018 PF01758 Sodium Bile acid symporter family TMO_c0019 PF03960 ArsC family TMO_c0020 PF03551 Transcriptional regulator PadR-like family TMO_c0024 PF00873 AcrB/AcrD/AcrF family TMO_c0025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_c0035 PF04002 RadC-like JAB domain TMO_c0046 PF12728 Helix-turn-helix domain TMO_c0048 PF01434 Peptidase family M41 TMO_c0048 PF06480 FtsH Extracellular TMO_c0048 PF17862 AAA+ lid domain TMO_c0048 PF00004 ATPase family associated with various cellular activities (AAA) TMO_c0068 PF06067 Domain of unknown function (DUF932) TMO_c0072 PF13700 Domain of unknown function (DUF4158) TMO_c0072 PF01526 Tn3 transposase DDE domain TMO_c0072 PF13700 Domain of unknown function (DUF4158) TMO_c0072 PF01526 Tn3 transposase DDE domain TMO_c0073 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_c0073 PF00403 Heavy-metal-associated domain TMO_c0073 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TMO_c0074 PF00403 Heavy-metal-associated domain TMO_c0075 PF02411 MerT mercuric transport protein TMO_c0076 PF00376 MerR family regulatory protein TMO_c0076 PF09278 MerR, DNA binding TMO_c0082 PF01252 Signal peptidase (SPase) II TMO_c0083 PF00403 Heavy-metal-associated domain TMO_c0084 PF13411 MerR HTH family regulatory protein TMO_c0087 PF01751 Toprim domain TMO_c0087 PF01131 DNA topoisomerase TMO_c0088 PF00436 Single-strand binding protein family TMO_c0095 PF13614 AAA domain TMO_c0100 PF04389 Peptidase family M28 TMO_c0102 PF00291 Pyridoxal-phosphate dependent enzyme TMO_c0103 PF00291 Pyridoxal-phosphate dependent enzyme TMO_c0106 PF04542 Sigma-70 region 2 TMO_c0106 PF00140 Sigma-70 factor, region 1.2 TMO_c0106 PF04539 Sigma-70 region 3 TMO_c0106 PF04545 Sigma-70, region 4 TMO_c0106 PF04546 Sigma-70, non-essential region TMO_c0106 PF03979 Sigma-70 factor, region 1.1 TMO_c0107 PF13662 Toprim domain TMO_c0107 PF01807 CHC2 zinc finger TMO_c0107 PF08275 DNA primase catalytic core, N-terminal domain TMO_c0109 PF00117 Glutamine amidotransferase class-I TMO_c0109 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TMO_c0110 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TMO_c0110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_c0110 PF02142 MGS-like domain TMO_c0111 PF03449 Transcription elongation factor, N-terminal TMO_c0111 PF01272 Transcription elongation factor, GreA/GreB, C-term TMO_c0113 PF05145 Transition state regulatory protein AbrB TMO_c0114 PF01037 Lrp/AsnC ligand binding domain TMO_c0115 PF06258 Mitochondrial fission ELM1 TMO_c0116 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_c0117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0117 PF03466 LysR substrate binding domain TMO_c0118 PF00990 Diguanylate cyclase, GGDEF domain TMO_c0118 PF17151 Periplasmic sensor domain TMO_c0119 PF09345 Domain of unknown function (DUF1987) TMO_c0123 PF00174 Oxidoreductase molybdopterin binding domain TMO_c0125 PF00271 Helicase conserved C-terminal domain TMO_c0125 PF04851 Type III restriction enzyme, res subunit TMO_c0125 PF02151 UvrB/uvrC motif TMO_c0125 PF12344 Ultra-violet resistance protein B TMO_c0125 PF17757 UvrB interaction domain TMO_c0126 PF13533 Biotin-lipoyl like TMO_c0127 PF00873 AcrB/AcrD/AcrF family TMO_c0129 PF02152 Dihydroneopterin aldolase TMO_c0130 PF12826 Helix-hairpin-helix motif TMO_c0130 PF01541 GIY-YIG catalytic domain TMO_c0130 PF02151 UvrB/uvrC motif TMO_c0130 PF08459 UvrC Helix-hairpin-helix N-terminal TMO_c0131 PF01066 CDP-alcohol phosphatidyltransferase TMO_c0132 PF02391 MoaE protein TMO_c0134 PF04545 Sigma-70, region 4 TMO_c0134 PF04539 Sigma-70 region 3 TMO_c0134 PF04542 Sigma-70 region 2 TMO_c0138 PF01638 HxlR-like helix-turn-helix TMO_c0139 PF01063 Amino-transferase class IV TMO_c0140 PF12802 MarR family TMO_c0141 PF00072 Response regulator receiver domain TMO_c0141 PF00486 Transcriptional regulatory protein, C terminal TMO_c0142 PF00672 HAMP domain TMO_c0142 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0144 PF00990 Diguanylate cyclase, GGDEF domain TMO_c0144 PF07694 5TMR of 5TMR-LYT TMO_c0145 PF01588 Putative tRNA binding domain TMO_c0148 PF04545 Sigma-70, region 4 TMO_c0148 PF04542 Sigma-70 region 2 TMO_c0148 PF00140 Sigma-70 factor, region 1.2 TMO_c0149 PF00596 Class II Aldolase and Adducin N-terminal domain TMO_c0150 PF01008 Initiation factor 2 subunit family TMO_c0151 PF01048 Phosphorylase superfamily TMO_c0152 PF02167 Cytochrome C1 family TMO_c0153 PF00032 Cytochrome b(C-terminal)/b6/petD TMO_c0153 PF00033 Cytochrome b/b6/petB TMO_c0154 PF00355 Rieske [2Fe-2S] domain TMO_c0154 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TMO_c0155 PF00588 SpoU rRNA Methylase family TMO_c0156 PF01218 Coproporphyrinogen III oxidase TMO_c0160 PF13735 tRNA nucleotidyltransferase domain 2 putative TMO_c0160 PF12627 Probable RNA and SrmB- binding site of polymerase A TMO_c0160 PF01743 Poly A polymerase head domain TMO_c0162 PF00293 NUDIX domain TMO_c0164 PF00293 NUDIX domain TMO_c0165 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_c0165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_c0165 PF18158 Adaptive response protein AidB N-terminal domain TMO_c0166 PF17925 Tetracyclin repressor-like, C-terminal domain TMO_c0166 PF00440 Bacterial regulatory proteins, tetR family TMO_c0178 PF08544 GHMP kinases C terminal TMO_c0178 PF00288 GHMP kinases N terminal domain TMO_c0183 PF00557 Metallopeptidase family M24 TMO_c0183 PF01321 Creatinase/Prolidase N-terminal domain TMO_c0185 PF13361 UvrD-like helicase C-terminal domain TMO_c0185 PF00580 UvrD/REP helicase N-terminal domain TMO_c0191 PF00149 Calcineurin-like phosphoesterase TMO_c0191 PF02872 5'-nucleotidase, C-terminal domain TMO_c0193 PF02913 FAD linked oxidases, C-terminal domain TMO_c0193 PF01565 FAD binding domain TMO_c0195 PF00005 ABC transporter TMO_c0196 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0198 PF00392 Bacterial regulatory proteins, gntR family TMO_c0198 PF00155 Aminotransferase class I and II TMO_c0200 PF00795 Carbon-nitrogen hydrolase TMO_c0203 PF02769 AIR synthase related protein, C-terminal domain TMO_c0203 PF00586 AIR synthase related protein, N-terminal domain TMO_c0204 PF13439 Glycosyltransferase Family 4 TMO_c0208 PF00106 short chain dehydrogenase TMO_c0209 PF03466 LysR substrate binding domain TMO_c0209 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0210 PF00378 Enoyl-CoA hydratase/isomerase TMO_c0211 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_c0211 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_c0213 PF00743 Flavin-binding monooxygenase-like TMO_c0214 PF00561 alpha/beta hydrolase fold TMO_c0220 PF00005 ABC transporter TMO_c0221 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TMO_c0227 PF00355 Rieske [2Fe-2S] domain TMO_c0227 PF00848 Ring hydroxylating alpha subunit (catalytic domain) TMO_c0229 PF01575 MaoC like domain TMO_c0229 PF00171 Aldehyde dehydrogenase family TMO_c0230 PF00533 BRCA1 C Terminus (BRCT) domain TMO_c0230 PF01653 NAD-dependent DNA ligase adenylation domain TMO_c0230 PF12826 Helix-hairpin-helix motif TMO_c0230 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TMO_c0230 PF03120 NAD-dependent DNA ligase OB-fold domain TMO_c0231 PF02463 RecF/RecN/SMC N terminal domain TMO_c0232 PF13525 Outer membrane lipoprotein TMO_c0233 PF01381 Helix-turn-helix TMO_c0234 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TMO_c0235 PF00091 Tubulin/FtsZ family, GTPase domain TMO_c0235 PF12327 FtsZ family, C-terminal domain TMO_c0236 PF02491 SHS2 domain inserted in FTSA TMO_c0237 PF03799 Cell division protein FtsQ TMO_c0237 PF08478 POTRA domain, FtsQ-type TMO_c0238 PF01820 D-ala D-ala ligase N-terminus TMO_c0238 PF07478 D-ala D-ala ligase C-terminus TMO_c0239 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TMO_c0239 PF01565 FAD binding domain TMO_c0240 PF08245 Mur ligase middle domain TMO_c0240 PF01225 Mur ligase family, catalytic domain TMO_c0240 PF02875 Mur ligase family, glutamate ligase domain TMO_c0241 PF03033 Glycosyltransferase family 28 N-terminal domain TMO_c0241 PF04101 Glycosyltransferase family 28 C-terminal domain TMO_c0242 PF01098 Cell cycle protein TMO_c0243 PF08245 Mur ligase middle domain TMO_c0244 PF00953 Glycosyl transferase family 4 TMO_c0245 PF01225 Mur ligase family, catalytic domain TMO_c0245 PF08245 Mur ligase middle domain TMO_c0245 PF02875 Mur ligase family, glutamate ligase domain TMO_c0246 PF01225 Mur ligase family, catalytic domain TMO_c0246 PF02875 Mur ligase family, glutamate ligase domain TMO_c0246 PF08245 Mur ligase middle domain TMO_c0247 PF00905 Penicillin binding protein transpeptidase domain TMO_c0247 PF03717 Penicillin-binding Protein dimerisation domain TMO_c0249 PF01795 MraW methylase family TMO_c0250 PF02381 MraZ protein, putative antitoxin-like TMO_c0251 PF01510 N-acetylmuramoyl-L-alanine amidase TMO_c0252 PF00892 EamA-like transporter family TMO_c0255 PF05099 Tellurite resistance protein TerB TMO_c0255 PF00226 DnaJ domain TMO_c0256 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_c0258 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_c0259 PF05378 Hydantoinase/oxoprolinase N-terminal region TMO_c0259 PF01968 Hydantoinase/oxoprolinase TMO_c0264 PF03466 LysR substrate binding domain TMO_c0264 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0267 PF07883 Cupin domain TMO_c0267 PF01381 Helix-turn-helix TMO_c0269 PF00732 GMC oxidoreductase TMO_c0269 PF05199 GMC oxidoreductase TMO_c0270 PF00034 Cytochrome c TMO_c0271 PF02558 Ketopantoate reductase PanE/ApbA TMO_c0271 PF08546 Ketopantoate reductase PanE/ApbA C terminal TMO_c0272 PF00892 EamA-like transporter family TMO_c0273 PF01638 HxlR-like helix-turn-helix TMO_c0274 PF02798 Glutathione S-transferase, N-terminal domain TMO_c0274 PF00043 Glutathione S-transferase, C-terminal domain TMO_c0276 PF01361 Tautomerase enzyme TMO_c0277 PF14759 Reductase C-terminal TMO_c0277 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_c0278 PF00301 Rubredoxin TMO_c0279 PF11583 P-aminobenzoate N-oxygenase AurF TMO_c0280 PF00464 Serine hydroxymethyltransferase TMO_c0281 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TMO_c0281 PF00117 Glutamine amidotransferase class-I TMO_c0282 PF00155 Aminotransferase class I and II TMO_c0282 PF00392 Bacterial regulatory proteins, gntR family TMO_c0284 PF01794 Ferric reductase like transmembrane component TMO_c0285 PF07690 Major Facilitator Superfamily TMO_c0286 PF03466 LysR substrate binding domain TMO_c0286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0287 PF00248 Aldo/keto reductase family TMO_c0288 PF13193 AMP-binding enzyme C-terminal domain TMO_c0288 PF00501 AMP-binding enzyme TMO_c0291 PF05981 CreA protein TMO_c0292 PF04011 LemA family TMO_c0293 PF01435 Peptidase family M48 TMO_c0294 PF01980 tRNA-methyltransferase O TMO_c0298 PF06693 Protein of unknown function (DUF1190) TMO_c0299 PF03738 Glutathionylspermidine synthase preATP-grasp TMO_c0301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0301 PF00072 Response regulator receiver domain TMO_c0302 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0307 PF00158 Sigma-54 interaction domain TMO_c0307 PF00072 Response regulator receiver domain TMO_c0307 PF02954 Bacterial regulatory protein, Fis family TMO_c0309 PF03109 ABC1 family TMO_c0311 PF00563 EAL domain TMO_c0311 PF03707 Bacterial signalling protein N terminal repeat TMO_c0311 PF00990 Diguanylate cyclase, GGDEF domain TMO_c0312 PF01546 Peptidase family M20/M25/M40 TMO_c0312 PF07687 Peptidase dimerisation domain TMO_c0314 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TMO_c0314 PF00205 Thiamine pyrophosphate enzyme, central domain TMO_c0314 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TMO_c0317 PF01850 PIN domain TMO_c0319 PF05161 MOFRL family TMO_c0319 PF13660 Domain of unknown function (DUF4147) TMO_c0320 PF02633 Creatinine amidohydrolase TMO_c0323 PF07969 Amidohydrolase family TMO_c0325 PF12833 Helix-turn-helix domain TMO_c0326 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) TMO_c0330 PF05114 Protein of unknown function (DUF692) TMO_c0332 PF00155 Aminotransferase class I and II TMO_c0333 PF00291 Pyridoxal-phosphate dependent enzyme TMO_c0334 PF00392 Bacterial regulatory proteins, gntR family TMO_c0334 PF00155 Aminotransferase class I and II TMO_c0335 PF02652 L-lactate permease TMO_c0337 PF01758 Sodium Bile acid symporter family TMO_c0338 PF03358 NADPH-dependent FMN reductase TMO_c0340 PF00561 alpha/beta hydrolase fold TMO_c0345 PF05853 beta-keto acid cleavage enzyme TMO_c0346 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_c0347 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0349 PF00005 ABC transporter TMO_c0349 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_c0351 PF00202 Aminotransferase class-III TMO_c0352 PF05378 Hydantoinase/oxoprolinase N-terminal region TMO_c0352 PF01968 Hydantoinase/oxoprolinase TMO_c0354 PF07690 Major Facilitator Superfamily TMO_c0355 PF01638 HxlR-like helix-turn-helix TMO_c0358 PF00330 Aconitase family (aconitate hydratase) TMO_c0359 PF00694 Aconitase C-terminal domain TMO_c0360 PF04303 PrpF protein TMO_c0361 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_c0363 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_c0364 PF07690 Major Facilitator Superfamily TMO_c0365 PF15723 Motility quorum-sensing regulator, toxin of MqsA TMO_c0366 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA TMO_c0368 PF13193 AMP-binding enzyme C-terminal domain TMO_c0368 PF00501 AMP-binding enzyme TMO_c0370 PF01209 ubiE/COQ5 methyltransferase family TMO_c0374 PF00672 HAMP domain TMO_c0374 PF17149 Periplasmic sensor domain found in signal transduction proteins TMO_c0374 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0374 PF01627 Hpt domain TMO_c0374 PF00072 Response regulator receiver domain TMO_c0375 PF01979 Amidohydrolase family TMO_c0376 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin TMO_c0377 PF01180 Dihydroorotate dehydrogenase TMO_c0378 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TMO_c0378 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_c0379 PF01546 Peptidase family M20/M25/M40 TMO_c0379 PF07687 Peptidase dimerisation domain TMO_c0380 PF00171 Aldehyde dehydrogenase family TMO_c0381 PF08362 YcdC-like protein, C-terminal region TMO_c0381 PF00440 Bacterial regulatory proteins, tetR family TMO_c0382 PF00459 Inositol monophosphatase family TMO_c0383 PF09827 CRISPR associated protein Cas2 TMO_c0384 PF01867 CRISPR associated protein Cas1 TMO_c0388 PF09704 CRISPR-associated protein (Cas_Cas5) TMO_c0391 PF02678 Pirin TMO_c0391 PF05726 Pirin C-terminal cupin domain TMO_c0393 PF01053 Cys/Met metabolism PLP-dependent enzyme TMO_c0394 PF00155 Aminotransferase class I and II TMO_c0394 PF00392 Bacterial regulatory proteins, gntR family TMO_c0397 PF01638 HxlR-like helix-turn-helix TMO_c0399 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TMO_c0401 PF14226 non-haem dioxygenase in morphine synthesis N-terminal TMO_c0401 PF03171 2OG-Fe(II) oxygenase superfamily TMO_c0404 PF02608 ABC transporter substrate-binding protein PnrA-like TMO_c0405 PF00005 ABC transporter TMO_c0408 PF01048 Phosphorylase superfamily TMO_c0408 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus TMO_c0413 PF00248 Aldo/keto reductase family TMO_c0414 PF00440 Bacterial regulatory proteins, tetR family TMO_c0415 PF02311 AraC-like ligand binding domain TMO_c0415 PF12833 Helix-turn-helix domain TMO_c0417 PF07715 TonB-dependent Receptor Plug Domain TMO_c0417 PF00593 TonB dependent receptor TMO_c0418 PF08241 Methyltransferase domain TMO_c0419 PF03466 LysR substrate binding domain TMO_c0419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0420 PF07690 Major Facilitator Superfamily TMO_c0421 PF02525 Flavodoxin-like fold TMO_c0422 PF03466 LysR substrate binding domain TMO_c0422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0424 PF01625 Peptide methionine sulfoxide reductase TMO_c0425 PF02690 Na+/Pi-cotransporter TMO_c0429 PF00108 Thiolase, N-terminal domain TMO_c0429 PF02803 Thiolase, C-terminal domain TMO_c0430 PF00005 ABC transporter TMO_c0431 PF00005 ABC transporter TMO_c0431 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_c0433 PF13458 Periplasmic binding protein TMO_c0436 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TMO_c0437 PF01799 [2Fe-2S] binding domain TMO_c0437 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_c0438 PF06719 AraC-type transcriptional regulator N-terminus TMO_c0438 PF12833 Helix-turn-helix domain TMO_c0439 PF09335 SNARE associated Golgi protein TMO_c0440 PF12320 Type 5 capsule protein repressor C-terminal domain TMO_c0440 PF00149 Calcineurin-like phosphoesterase TMO_c0441 PF13476 AAA domain TMO_c0442 PF00202 Aminotransferase class-III TMO_c0443 PF00392 Bacterial regulatory proteins, gntR family TMO_c0443 PF00155 Aminotransferase class I and II TMO_c0444 PF00155 Aminotransferase class I and II TMO_c0444 PF00392 Bacterial regulatory proteins, gntR family TMO_c0445 PF01425 Amidase TMO_c0446 PF01979 Amidohydrolase family TMO_c0447 PF02492 CobW/HypB/UreG, nucleotide-binding domain TMO_c0447 PF07683 Cobalamin synthesis protein cobW C-terminal domain TMO_c0448 PF00171 Aldehyde dehydrogenase family TMO_c0450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TMO_c0451 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0452 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0452 PF12911 N-terminal TM domain of oligopeptide transport permease C TMO_c0453 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_c0453 PF00005 ABC transporter TMO_c0454 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TMO_c0454 PF00005 ABC transporter TMO_c0455 PF00291 Pyridoxal-phosphate dependent enzyme TMO_c0456 PF01037 Lrp/AsnC ligand binding domain TMO_c0457 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_c0460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_c0461 PF00005 ABC transporter TMO_c0462 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0464 PF00497 Bacterial extracellular solute-binding proteins, family 3 TMO_c0465 PF00392 Bacterial regulatory proteins, gntR family TMO_c0465 PF07729 FCD domain TMO_c0466 PF03561 Allantoicase repeat TMO_c0467 PF04115 Ureidoglycolate lyase TMO_c0473 PF00392 Bacterial regulatory proteins, gntR family TMO_c0473 PF00155 Aminotransferase class I and II TMO_c0475 PF02082 Transcriptional regulator TMO_c0478 PF02754 Cysteine-rich domain TMO_c0478 PF13183 4Fe-4S dicluster domain TMO_c0479 PF01565 FAD binding domain TMO_c0480 PF02913 FAD linked oxidases, C-terminal domain TMO_c0480 PF01565 FAD binding domain TMO_c0481 PF00444 Ribosomal protein L36 TMO_c0484 PF00501 AMP-binding enzyme TMO_c0484 PF13193 AMP-binding enzyme C-terminal domain TMO_c0485 PF01039 Carboxyl transferase domain TMO_c0486 PF00487 Fatty acid desaturase TMO_c0490 PF01494 FAD binding domain TMO_c0492 PF00171 Aldehyde dehydrogenase family TMO_c0493 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TMO_c0493 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TMO_c0494 PF03466 LysR substrate binding domain TMO_c0494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0496 PF08681 Protein of unknown function (DUF1778) TMO_c0497 PF00005 ABC transporter TMO_c0498 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0499 PF09084 NMT1/THI5 like TMO_c0500 PF00491 Arginase family TMO_c0501 PF03466 LysR substrate binding domain TMO_c0501 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0504 PF03315 Serine dehydratase beta chain TMO_c0504 PF03313 Serine dehydratase alpha chain TMO_c0505 PF01546 Peptidase family M20/M25/M40 TMO_c0505 PF07687 Peptidase dimerisation domain TMO_c0506 PF03466 LysR substrate binding domain TMO_c0506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0507 PF00180 Isocitrate/isopropylmalate dehydrogenase TMO_c0507 PF18324 Hypothetical protein TT1725 TMO_c0509 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_c0510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_c0510 PF00672 HAMP domain TMO_c0510 PF12729 Four helix bundle sensory module for signal transduction TMO_c0511 PF00672 HAMP domain TMO_c0511 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_c0516 PF09827 CRISPR associated protein Cas2 TMO_c0517 PF01867 CRISPR associated protein Cas1 TMO_c0518 PF18541 RuvC endonuclease subdomain 3 TMO_c0518 PF18470 Cas9 alpha-helical lobe domain TMO_c0518 PF13395 HNH endonuclease TMO_c0520 PF01547 Bacterial extracellular solute-binding protein TMO_c0521 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0522 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0523 PF00005 ABC transporter TMO_c0523 PF08402 TOBE domain TMO_c0524 PF00072 Response regulator receiver domain TMO_c0524 PF01627 Hpt domain TMO_c0524 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0524 PF00672 HAMP domain TMO_c0524 PF17149 Periplasmic sensor domain found in signal transduction proteins TMO_c0526 PF00375 Sodium:dicarboxylate symporter family TMO_c0527 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0527 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0528 PF00072 Response regulator receiver domain TMO_c0528 PF02954 Bacterial regulatory protein, Fis family TMO_c0528 PF00158 Sigma-54 interaction domain TMO_c0530 PF00990 Diguanylate cyclase, GGDEF domain TMO_c0530 PF07694 5TMR of 5TMR-LYT TMO_c0531 PF01212 Beta-eliminating lyase TMO_c0533 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TMO_c0533 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TMO_c0534 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0534 PF03466 LysR substrate binding domain TMO_c0535 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TMO_c0538 PF03466 LysR substrate binding domain TMO_c0538 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0541 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0541 PF03466 LysR substrate binding domain TMO_c0542 PF13460 NAD(P)H-binding TMO_c0543 PF01638 HxlR-like helix-turn-helix TMO_c0545 PF02525 Flavodoxin-like fold TMO_c0547 PF05724 Thiopurine S-methyltransferase (TPMT) TMO_c0548 PF00196 Bacterial regulatory proteins, luxR family TMO_c0549 PF01134 Glucose inhibited division protein A TMO_c0550 PF00106 short chain dehydrogenase TMO_c0553 PF00593 TonB dependent receptor TMO_c0553 PF07715 TonB-dependent Receptor Plug Domain TMO_c0556 PF13473 Cupredoxin-like domain TMO_c0556 PF09375 Imelysin TMO_c0557 PF04261 Dyp-type peroxidase family TMO_c0558 PF13473 Cupredoxin-like domain TMO_c0558 PF09375 Imelysin TMO_c0559 PF03239 Iron permease FTR1 family TMO_c0561 PF00989 PAS fold TMO_c0561 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0561 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0562 PF00989 PAS fold TMO_c0562 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0562 PF13188 PAS domain TMO_c0562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0563 PF00551 Formyl transferase TMO_c0564 PF16868 NMT1-like family TMO_c0571 PF00072 Response regulator receiver domain TMO_c0571 PF00672 HAMP domain TMO_c0571 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0571 PF01627 Hpt domain TMO_c0571 PF17149 Periplasmic sensor domain found in signal transduction proteins TMO_c0571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0572 PF00072 Response regulator receiver domain TMO_c0572 PF00196 Bacterial regulatory proteins, luxR family TMO_c0573 PF07690 Major Facilitator Superfamily TMO_c0581 PF04909 Amidohydrolase TMO_c0584 PF01970 Tripartite tricarboxylate transporter TctA family TMO_c0587 PF03070 TENA/THI-4/PQQC family TMO_c0588 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_c0589 PF01521 Iron-sulphur cluster biosynthesis TMO_c0590 PF13533 Biotin-lipoyl like TMO_c0591 PF00873 AcrB/AcrD/AcrF family TMO_c0592 PF02254 TrkA-N domain TMO_c0592 PF00999 Sodium/hydrogen exchanger family TMO_c0594 PF07549 SecD/SecF GG Motif TMO_c0594 PF02355 Protein export membrane protein TMO_c0595 PF00975 Thioesterase domain TMO_c0597 PF00005 ABC transporter TMO_c0597 PF00664 ABC transporter transmembrane region TMO_c0600 PF00873 AcrB/AcrD/AcrF family TMO_c0602 PF00501 AMP-binding enzyme TMO_c0602 PF13193 AMP-binding enzyme C-terminal domain TMO_c0602 PF00668 Condensation domain TMO_c0602 PF00550 Phosphopantetheine attachment site TMO_c0603 PF08659 KR domain TMO_c0603 PF00550 Phosphopantetheine attachment site TMO_c0603 PF16197 Ketoacyl-synthetase C-terminal extension TMO_c0603 PF00501 AMP-binding enzyme TMO_c0603 PF00668 Condensation domain TMO_c0603 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_c0603 PF13193 AMP-binding enzyme C-terminal domain TMO_c0603 PF14765 Polyketide synthase dehydratase TMO_c0603 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_c0604 PF00501 AMP-binding enzyme TMO_c0604 PF00668 Condensation domain TMO_c0604 PF00550 Phosphopantetheine attachment site TMO_c0604 PF13193 AMP-binding enzyme C-terminal domain TMO_c0605 PF00501 AMP-binding enzyme TMO_c0605 PF13193 AMP-binding enzyme C-terminal domain TMO_c0605 PF00668 Condensation domain TMO_c0605 PF00550 Phosphopantetheine attachment site TMO_c0606 PF00501 AMP-binding enzyme TMO_c0606 PF00668 Condensation domain TMO_c0606 PF00550 Phosphopantetheine attachment site TMO_c0606 PF13193 AMP-binding enzyme C-terminal domain TMO_c0607 PF13193 AMP-binding enzyme C-terminal domain TMO_c0607 PF00668 Condensation domain TMO_c0607 PF16197 Ketoacyl-synthetase C-terminal extension TMO_c0607 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_c0607 PF08659 KR domain TMO_c0607 PF00550 Phosphopantetheine attachment site TMO_c0607 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_c0607 PF00501 AMP-binding enzyme TMO_c0607 PF14765 Polyketide synthase dehydratase TMO_c0608 PF16197 Ketoacyl-synthetase C-terminal extension TMO_c0608 PF00668 Condensation domain TMO_c0608 PF13193 AMP-binding enzyme C-terminal domain TMO_c0608 PF00501 AMP-binding enzyme TMO_c0608 PF00109 Beta-ketoacyl synthase, N-terminal domain TMO_c0608 PF02801 Beta-ketoacyl synthase, C-terminal domain TMO_c0608 PF08659 KR domain TMO_c0608 PF14765 Polyketide synthase dehydratase TMO_c0608 PF00550 Phosphopantetheine attachment site TMO_c0609 PF00668 Condensation domain TMO_c0609 PF00550 Phosphopantetheine attachment site TMO_c0609 PF00501 AMP-binding enzyme TMO_c0609 PF13193 AMP-binding enzyme C-terminal domain TMO_c0610 PF00668 Condensation domain TMO_c0610 PF00501 AMP-binding enzyme TMO_c0610 PF13193 AMP-binding enzyme C-terminal domain TMO_c0610 PF00550 Phosphopantetheine attachment site TMO_c0611 PF00668 Condensation domain TMO_c0611 PF00550 Phosphopantetheine attachment site TMO_c0611 PF00501 AMP-binding enzyme TMO_c0611 PF00501 AMP-binding enzyme TMO_c0611 PF00550 Phosphopantetheine attachment site TMO_c0611 PF00668 Condensation domain TMO_c0611 PF13193 AMP-binding enzyme C-terminal domain TMO_c0611 PF13193 AMP-binding enzyme C-terminal domain TMO_c0612 PF03621 MbtH-like protein TMO_c0619 PF07690 Major Facilitator Superfamily TMO_c0620 PF00392 Bacterial regulatory proteins, gntR family TMO_c0620 PF07729 FCD domain TMO_c0622 PF03626 Prokaryotic Cytochrome C oxidase subunit IV TMO_c0623 PF00510 Cytochrome c oxidase subunit III TMO_c0624 PF00115 Cytochrome C and Quinol oxidase polypeptide I TMO_c0625 PF06481 COX Aromatic Rich Motif TMO_c0625 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TMO_c0628 PF01555 DNA methylase TMO_c0631 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TMO_c0633 PF00982 Glycosyltransferase family 20 TMO_c0634 PF05116 Sucrose-6F-phosphate phosphohydrolase TMO_c0634 PF00982 Glycosyltransferase family 20 TMO_c0635 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TMO_c0635 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TMO_c0636 PF00128 Alpha amylase, catalytic domain TMO_c0639 PF01063 Amino-transferase class IV TMO_c0641 PF00378 Enoyl-CoA hydratase/isomerase TMO_c0642 PF12833 Helix-turn-helix domain TMO_c0642 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term TMO_c0643 PF02913 FAD linked oxidases, C-terminal domain TMO_c0643 PF01565 FAD binding domain TMO_c0644 PF04909 Amidohydrolase TMO_c0645 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_c0647 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_c0648 PF00571 CBS domain TMO_c0648 PF00291 Pyridoxal-phosphate dependent enzyme TMO_c0649 PF00682 HMGL-like TMO_c0652 PF02655 ATP-grasp domain TMO_c0652 PF00206 Lyase TMO_c0658 PF07883 Cupin domain TMO_c0659 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_c0660 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_c0661 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TMO_c0662 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_c0663 PF13417 Glutathione S-transferase, N-terminal domain TMO_c0664 PF01381 Helix-turn-helix TMO_c0665 PF00266 Aminotransferase class-V TMO_c0666 PF00266 Aminotransferase class-V TMO_c0667 PF02082 Transcriptional regulator TMO_c0668 PF00132 Bacterial transferase hexapeptide (six repeats) TMO_c0668 PF06426 Serine acetyltransferase, N-terminal TMO_c0669 PF02129 X-Pro dipeptidyl-peptidase (S15 family) TMO_c0670 PF00291 Pyridoxal-phosphate dependent enzyme TMO_c0673 PF09339 IclR helix-turn-helix domain TMO_c0673 PF01614 Bacterial transcriptional regulator TMO_c0674 PF00557 Metallopeptidase family M24 TMO_c0674 PF01321 Creatinase/Prolidase N-terminal domain TMO_c0675 PF00403 Heavy-metal-associated domain TMO_c0676 PF13411 MerR HTH family regulatory protein TMO_c0677 PF00398 Ribosomal RNA adenine dimethylase TMO_c0678 PF03702 Anhydro-N-acetylmuramic acid kinase TMO_c0679 PF00579 tRNA synthetases class I (W and Y) TMO_c0680 PF04264 YceI-like domain TMO_c0681 PF01047 MarR family TMO_c0683 PF13533 Biotin-lipoyl like TMO_c0685 PF03710 Glutamate-ammonia ligase adenylyltransferase TMO_c0685 PF08335 GlnD PII-uridylyltransferase TMO_c0686 PF00578 AhpC/TSA family TMO_c0687 PF04305 Protein of unknown function (DUF455) TMO_c0694 PF01575 MaoC like domain TMO_c0694 PF00171 Aldehyde dehydrogenase family TMO_c0695 PF13649 Methyltransferase domain TMO_c0697 PF00196 Bacterial regulatory proteins, luxR family TMO_c0697 PF03472 Autoinducer binding domain TMO_c0698 PF00765 Autoinducer synthase TMO_c0701 PF03462 PCRF domain TMO_c0701 PF00472 RF-1 domain TMO_c0702 PF00905 Penicillin binding protein transpeptidase domain TMO_c0702 PF00912 Transglycosylase TMO_c0702 PF17092 Penicillin-binding protein OB-like domain TMO_c0703 PF01520 N-acetylmuramoyl-L-alanine amidase TMO_c0703 PF11741 AMIN domain TMO_c0704 PF12111 Polyribonucleotide phosphorylase C terminal TMO_c0704 PF10150 Ribonuclease E/G family TMO_c0704 PF00575 S1 RNA binding domain TMO_c0705 PF00155 Aminotransferase class I and II TMO_c0709 PF13419 Haloacid dehalogenase-like hydrolase TMO_c0712 PF01850 PIN domain TMO_c0714 PF03466 LysR substrate binding domain TMO_c0714 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_c0715 PF08447 PAS fold TMO_c0715 PF13426 PAS domain TMO_c0717 PF04209 homogentisate 1,2-dioxygenase TMO_c0718 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TMO_c0720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TMO_c0720 PF16591 Helical bimodular sensor domain TMO_c0720 PF00672 HAMP domain TMO_c0721 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_c0721 PF00072 Response regulator receiver domain TMO_c0726 PF00248 Aldo/keto reductase family TMO_c0727 PF13193 AMP-binding enzyme C-terminal domain TMO_c0727 PF00550 Phosphopantetheine attachment site TMO_c0727 PF00501 AMP-binding enzyme TMO_c0727 PF00668 Condensation domain TMO_c0728 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TMO_c0728 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TMO_c0730 PF05690 Thiazole biosynthesis protein ThiG TMO_c0730 PF02597 ThiS family TMO_c0731 PF01220 Dehydroquinase class II TMO_c0732 PF00364 Biotin-requiring enzyme TMO_c0733 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_c0733 PF02785 Biotin carboxylase C-terminal domain TMO_c0733 PF00289 Biotin carboxylase, N-terminal domain TMO_c0734 PF01168 Alanine racemase, N-terminal domain TMO_c0734 PF14031 Putative serine dehydratase domain TMO_c0735 PF04317 YcjX-like family, DUF463 TMO_c0736 PF05128 Domain of unknown function (DUF697) TMO_c0737 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TMO_c0741 PF08471 Class II vitamin B12-dependent ribonucleotide reductase TMO_c0741 PF02867 Ribonucleotide reductase, barrel domain TMO_c0749 PF00005 ABC transporter TMO_c0749 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_c0750 PF00005 ABC transporter TMO_c0751 PF02653 Branched-chain amino acid transport system / permease component TMO_c0752 PF11862 Domain of unknown function (DUF3382) TMO_c0752 PF02653 Branched-chain amino acid transport system / permease component TMO_c0753 PF07690 Major Facilitator Superfamily TMO_c0754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0754 PF03466 LysR substrate binding domain TMO_c0758 PF01139 tRNA-splicing ligase RtcB TMO_c0759 PF00158 Sigma-54 interaction domain TMO_c0759 PF06956 Regulator of RNA terminal phosphate cyclase TMO_c0760 PF02082 Transcriptional regulator TMO_c0761 PF13458 Periplasmic binding protein TMO_c0763 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TMO_c0764 PF00111 2Fe-2S iron-sulfur cluster binding domain TMO_c0764 PF01799 [2Fe-2S] binding domain TMO_c0765 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TMO_c0765 PF00034 Cytochrome c TMO_c0766 PF00501 AMP-binding enzyme TMO_c0767 PF00005 ABC transporter TMO_c0770 PF02653 Branched-chain amino acid transport system / permease component TMO_c0771 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_c0771 PF00005 ABC transporter TMO_c0773 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_c0773 PF12806 Acetyl-CoA dehydrogenase C-terminal like TMO_c0773 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_c0773 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_c0777 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TMO_c0777 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TMO_c0778 PF00211 Adenylate and Guanylate cyclase catalytic domain TMO_c0778 PF00072 Response regulator receiver domain TMO_c0782 PF12806 Acetyl-CoA dehydrogenase C-terminal like TMO_c0782 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_c0782 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_c0782 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_c0783 PF00378 Enoyl-CoA hydratase/isomerase TMO_c0783 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TMO_c0783 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TMO_c0784 PF00108 Thiolase, N-terminal domain TMO_c0784 PF02803 Thiolase, C-terminal domain TMO_c0786 PF00501 AMP-binding enzyme TMO_c0786 PF13193 AMP-binding enzyme C-terminal domain TMO_c0787 PF01381 Helix-turn-helix TMO_c0793 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TMO_c0793 PF02896 PEP-utilising enzyme, TIM barrel domain TMO_c0793 PF00391 PEP-utilising enzyme, mobile domain TMO_c0794 PF02092 Glycyl-tRNA synthetase beta subunit TMO_c0794 PF05746 DALR anticodon binding domain TMO_c0796 PF02091 Glycyl-tRNA synthetase alpha subunit TMO_c0798 PF06965 Na+/H+ antiporter 1 TMO_c0798 PF01343 Peptidase family S49 TMO_c0799 PF05175 Methyltransferase small domain TMO_c0801 PF00348 Polyprenyl synthetase TMO_c0802 PF00989 PAS fold TMO_c0802 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0806 PF00501 AMP-binding enzyme TMO_c0807 PF02770 Acyl-CoA dehydrogenase, middle domain TMO_c0807 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TMO_c0807 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TMO_c0808 PF00378 Enoyl-CoA hydratase/isomerase TMO_c0813 PF00440 Bacterial regulatory proteins, tetR family TMO_c0814 PF00144 Beta-lactamase TMO_c0818 PF02567 Phenazine biosynthesis-like protein TMO_c0819 PF00392 Bacterial regulatory proteins, gntR family TMO_c0819 PF00155 Aminotransferase class I and II TMO_c0822 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_c0822 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TMO_c0823 PF02785 Biotin carboxylase C-terminal domain TMO_c0823 PF00289 Biotin carboxylase, N-terminal domain TMO_c0823 PF00364 Biotin-requiring enzyme TMO_c0823 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_c0824 PF02785 Biotin carboxylase C-terminal domain TMO_c0824 PF00289 Biotin carboxylase, N-terminal domain TMO_c0824 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TMO_c0827 PF01161 Phosphatidylethanolamine-binding protein TMO_c0828 PF12833 Helix-turn-helix domain TMO_c0830 PF01810 LysE type translocator TMO_c0831 PF02310 B12 binding domain TMO_c0831 PF01642 Methylmalonyl-CoA mutase TMO_c0832 PF01642 Methylmalonyl-CoA mutase TMO_c0836 PF07715 TonB-dependent Receptor Plug Domain TMO_c0836 PF00593 TonB dependent receptor TMO_c0837 PF00005 ABC transporter TMO_c0837 PF06472 ABC transporter transmembrane region 2 TMO_c0838 PF00248 Aldo/keto reductase family TMO_c0840 PF17991 Thioredoxin like C-terminal domain TMO_c0840 PF02683 Cytochrome C biogenesis protein transmembrane region TMO_c0840 PF00578 AhpC/TSA family TMO_c0841 PF00583 Acetyltransferase (GNAT) family TMO_c0842 PF02146 Sir2 family TMO_c0843 PF00881 Nitroreductase family TMO_c0845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0845 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0845 PF00989 PAS fold TMO_c0847 PF00034 Cytochrome c TMO_c0848 PF03167 Uracil DNA glycosylase superfamily TMO_c0849 PF00158 Sigma-54 interaction domain TMO_c0849 PF01590 GAF domain TMO_c0849 PF02954 Bacterial regulatory protein, Fis family TMO_c0850 PF01513 ATP-NAD kinase TMO_c0851 PF00676 Dehydrogenase E1 component TMO_c0852 PF02779 Transketolase, pyrimidine binding domain TMO_c0852 PF02780 Transketolase, C-terminal domain TMO_c0853 PF00364 Biotin-requiring enzyme TMO_c0853 PF00561 alpha/beta hydrolase fold TMO_c0854 PF00106 short chain dehydrogenase TMO_c0856 PF08007 Cupin superfamily protein TMO_c0858 PF05402 Coenzyme PQQ synthesis protein D (PqqD) TMO_c0861 PF13537 Glutamine amidotransferase domain TMO_c0861 PF00733 Asparagine synthase TMO_c0866 PF07715 TonB-dependent Receptor Plug Domain TMO_c0866 PF00593 TonB dependent receptor TMO_c0867 PF00440 Bacterial regulatory proteins, tetR family TMO_c0867 PF08362 YcdC-like protein, C-terminal region TMO_c0869 PF00378 Enoyl-CoA hydratase/isomerase TMO_c0870 PF00108 Thiolase, N-terminal domain TMO_c0870 PF02803 Thiolase, C-terminal domain TMO_c0871 PF16884 N-terminal domain of oxidoreductase TMO_c0871 PF00107 Zinc-binding dehydrogenase TMO_c0872 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_c0872 PF00989 PAS fold TMO_c0872 PF00512 His Kinase A (phospho-acceptor) domain TMO_c0876 PF01557 Fumarylacetoacetate (FAA) hydrolase family TMO_c0877 PF00563 EAL domain TMO_c0877 PF12792 CSS motif domain associated with EAL TMO_c0879 PF01381 Helix-turn-helix TMO_c0880 PF00005 ABC transporter TMO_c0881 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0882 PF00528 Binding-protein-dependent transport system inner membrane component TMO_c0884 PF00990 Diguanylate cyclase, GGDEF domain TMO_c0884 PF00563 EAL domain TMO_c0884 PF03707 Bacterial signalling protein N terminal repeat TMO_c0884 PF13188 PAS domain TMO_c0885 PF13185 GAF domain TMO_c0886 PF07690 Major Facilitator Superfamily TMO_c0887 PF03466 LysR substrate binding domain TMO_c0887 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TMO_c0888 PF07690 Major Facilitator Superfamily TMO_c0889 PF01047 MarR family TMO_c0891 PF00676 Dehydrogenase E1 component TMO_c0892 PF02779 Transketolase, pyrimidine binding domain TMO_c0892 PF02780 Transketolase, C-terminal domain TMO_c0903 PF13533 Biotin-lipoyl like TMO_c0907 PF07687 Peptidase dimerisation domain TMO_c0907 PF01546 Peptidase family M20/M25/M40 TMO_c0910 PF03458 UPF0126 domain TMO_c0915 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_c0917 PF03480 Bacterial extracellular solute-binding protein, family 7 TMO_c0918 PF03597 Cytochrome oxidase maturation protein cbb3-type TMO_c0919 PF00403 Heavy-metal-associated domain TMO_c0921 PF13746 4Fe-4S dicluster domain TMO_c0921 PF12801 4Fe-4S binding domain TMO_c0921 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase TMO_c0922 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TMO_c0922 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TMO_c0924 PF00115 Cytochrome C and Quinol oxidase polypeptide I TMO_c0928 PF00005 ABC transporter TMO_c0929 PF00005 ABC transporter TMO_c0929 PF12399 Branched-chain amino acid ATP-binding cassette transporter TMO_c0931 PF02653 Branched-chain amino acid transport system / permease component TMO_c0934 PF01169 Uncharacterized protein family UPF0016 TMO_c0936 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TMO_c0936 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TMO_c0938 PF01381 Helix-turn-helix TMO_c0941 PF13193 AMP-binding enzyme C-terminal domain TMO_c0941 PF00501 AMP-binding enzyme TMO_c0942 PF13193 AMP-binding enzyme C-terminal domain TMO_c0942 PF00501 AMP-binding enzyme TMO_d0004 PF01965 DJ-1/PfpI family TMO_d0006 PF00989 PAS fold TMO_d0006 PF00512 His Kinase A (phospho-acceptor) domain TMO_d0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TMO_d0006 PF13188 PAS domain TMO_d0007 PF03652 Holliday junction resolvase TMO_d0008 PF02686 Glu-tRNAGln amidotransferase C subunit TMO_d0009 PF01425 Amidase TMO_d0010 PF02934 GatB/GatE catalytic domain TMO_d0010 PF02637 GatB domain TMO_d0017 PF00528 Binding-protein-dependent transport system inner membrane component TMO_d0018 PF00005 ABC transporter TMO_d0018 PF09383 NIL domain TMO_d0021 PF06508 Queuosine biosynthesis protein QueC TMO_d0023 PF00501 AMP-binding enzyme TMO_d0023 PF13193 AMP-binding enzyme C-terminal domain TMO_d0024 PF00440 Bacterial regulatory proteins, tetR family TMO_d0024 PF17925 Tetracyclin repressor-like, C-terminal domain TMO_d0027 PF00455 DeoR C terminal sensor domain TMO_d0027 PF08220 DeoR-like helix-turn-helix domain TMO_d0029 PF00005 ABC transporter TMO_d0029 PF08402 TOBE domain TMO_d0031 PF00528 Binding-protein-dependent transport system inner membrane component TMO_d0033 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TMO_d0035 PF08220 DeoR-like helix-turn-helix domain TMO_d0035 PF00455 DeoR C terminal sensor domain TMO_d0037 PF17806 Sarcosine oxidase A3 domain TMO_d0037 PF07992 Pyridine nucleotide-disulphide oxidoreductase TMO_d0037 PF08669 Glycine cleavage T-protein C-terminal barrel domain TMO_d0037 PF01571 Aminomethyltransferase folate-binding domain TMO_d0038 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TMO_d0038 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TMO_d0041 PF03328 HpcH/HpaI aldolase/citrate lyase family TMO_d0043 PF00497 Bacterial extracellular solute-binding proteins, family 3 TMO_d0044 PF00528 Binding-protein-dependent transport system inner membrane component TMO_d0045 PF00005 ABC transporter TMO_d0046 PF01266 FAD dependent oxidoreductase TMO_d0048 PF00005 ABC transporter TMO_d0049 PF00664 ABC transporter transmembrane region TMO_d0049 PF00005 ABC transporter TMO_d0050 PF08021 Siderophore-interacting FAD-binding domain TMO_d0050 PF04954 Siderophore-interacting protein TMO_d0051 PF01032 FecCD transport family TMO_d0053 PF00593 TonB dependent receptor TMO_d0053 PF07715 TonB-dependent Receptor Plug Domain TMO_d0058 PF10609 NUBPL iron-transfer P-loop NTPase TMO_d0059 PF01145 SPFH domain / Band 7 family TMO_d0060 PF01145 SPFH domain / Band 7 family TMO_d0063 PF13180 PDZ domain TMO_d0064 PF00248 Aldo/keto reductase family TMO_d0067 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TMO_d0067 PF00205 Thiamine pyrophosphate enzyme, central domain TMO_d0067 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TMO_d0068 PF10369 Small subunit of acetolactate synthase TMO_d0068 PF01842 ACT domain TMO_d0069 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TMO_d0069 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TMO_d0070 PF03631 Virulence factor BrkB