locus-tag class description TREAZ_0008 PF03462 PCRF domain TREAZ_0008 PF00472 RF-1 domain TREAZ_0010 PF02881 SRP54-type protein, helical bundle domain TREAZ_0010 PF00448 SRP54-type protein, GTPase domain TREAZ_0012 PF02687 FtsX-like permease family TREAZ_0012 PF12704 MacB-like periplasmic core domain TREAZ_0013 PF00005 ABC transporter TREAZ_0015 PF00072 Response regulator receiver domain TREAZ_0018 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_0018 PF00005 ABC transporter TREAZ_0019 PF00005 ABC transporter TREAZ_0019 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_0020 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0021 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREAZ_0023 PF00270 DEAD/DEAH box helicase TREAZ_0023 PF08494 DEAD/H associated TREAZ_0023 PF00271 Helicase conserved C-terminal domain TREAZ_0024 PF01636 Phosphotransferase enzyme family TREAZ_0029 PF02653 Branched-chain amino acid transport system / permease component TREAZ_0030 PF02653 Branched-chain amino acid transport system / permease component TREAZ_0031 PF00005 ABC transporter TREAZ_0032 PF05336 L-rhamnose mutarotase TREAZ_0033 PF02915 Rubrerythrin TREAZ_0035 PF01475 Ferric uptake regulator family TREAZ_0038 PF00132 Bacterial transferase hexapeptide (six repeats) TREAZ_0048 PF01926 50S ribosome-binding GTPase TREAZ_0048 PF07650 KH domain TREAZ_0051 PF08279 HTH domain TREAZ_0051 PF03099 Biotin/lipoate A/B protein ligase family TREAZ_0051 PF02237 Biotin protein ligase C terminal domain TREAZ_0052 PF02403 Seryl-tRNA synthetase N-terminal domain TREAZ_0052 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREAZ_0055 PF00793 DAHP synthetase I family TREAZ_0055 PF18152 DAHP synthase ferredoxin-like domain TREAZ_0056 PF01232 Mannitol dehydrogenase Rossmann domain TREAZ_0056 PF08125 Mannitol dehydrogenase C-terminal domain TREAZ_0059 PF00133 tRNA synthetases class I (I, L, M and V) TREAZ_0059 PF09334 tRNA synthetases class I (M) TREAZ_0059 PF08264 Anticodon-binding domain of tRNA TREAZ_0059 PF13603 Leucyl-tRNA synthetase, Domain 2 TREAZ_0061 PF08207 Elongation factor P (EF-P) KOW-like domain TREAZ_0061 PF09285 Elongation factor P, C-terminal TREAZ_0061 PF01132 Elongation factor P (EF-P) OB domain TREAZ_0068 PF08439 Oligopeptidase F TREAZ_0068 PF01432 Peptidase family M3 TREAZ_0071 PF08245 Mur ligase middle domain TREAZ_0071 PF02875 Mur ligase family, glutamate ligase domain TREAZ_0073 PF08245 Mur ligase middle domain TREAZ_0073 PF02875 Mur ligase family, glutamate ligase domain TREAZ_0073 PF01225 Mur ligase family, catalytic domain TREAZ_0075 PF01242 6-pyruvoyl tetrahydropterin synthase TREAZ_0076 PF01871 AMMECR1 TREAZ_0077 PF02481 DNA recombination-mediator protein A TREAZ_0077 PF17782 DprA winged helix domain TREAZ_0078 PF03591 AzlC protein TREAZ_0079 PF05437 Branched-chain amino acid transport protein (AzlD) TREAZ_0080 PF04102 SlyX TREAZ_0082 PF01425 Amidase TREAZ_0088 PF00196 Bacterial regulatory proteins, luxR family TREAZ_0089 PF04101 Glycosyltransferase family 28 C-terminal domain TREAZ_0089 PF03033 Glycosyltransferase family 28 N-terminal domain TREAZ_0091 PF09115 DNA polymerase III, delta subunit, C terminal TREAZ_0092 PF13188 PAS domain TREAZ_0092 PF00989 PAS fold TREAZ_0092 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_0092 PF13426 PAS domain TREAZ_0092 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0093 PF00072 Response regulator receiver domain TREAZ_0093 PF00158 Sigma-54 interaction domain TREAZ_0093 PF02954 Bacterial regulatory protein, Fis family TREAZ_0095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_0097 PF01263 Aldose 1-epimerase TREAZ_0098 PF01991 ATP synthase (E/31 kDa) subunit TREAZ_0100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREAZ_0100 PF16886 ATPsynthase alpha/beta subunit N-term extension TREAZ_0100 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREAZ_0101 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREAZ_0101 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREAZ_0102 PF01813 ATP synthase subunit D TREAZ_0105 PF04551 GcpE protein TREAZ_0109 PF01649 Ribosomal protein S20 TREAZ_0110 PF00216 Bacterial DNA-binding protein TREAZ_0111 PF00795 Carbon-nitrogen hydrolase TREAZ_0112 PF00072 Response regulator receiver domain TREAZ_0112 PF00486 Transcriptional regulatory protein, C terminal TREAZ_0114 PF00994 Probable molybdopterin binding domain TREAZ_0114 PF18146 Damage-inducible protein CinA KH domain TREAZ_0114 PF02464 Competence-damaged protein TREAZ_0115 PF07497 Rho termination factor, RNA-binding domain TREAZ_0115 PF07498 Rho termination factor, N-terminal domain TREAZ_0115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREAZ_0116 PF01197 Ribosomal protein L31 TREAZ_0118 PF10672 S-adenosylmethionine-dependent methyltransferase TREAZ_0126 PF00730 HhH-GPD superfamily base excision DNA repair protein TREAZ_0126 PF00633 Helix-hairpin-helix motif TREAZ_0127 PF08264 Anticodon-binding domain of tRNA TREAZ_0127 PF00133 tRNA synthetases class I (I, L, M and V) TREAZ_0132 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain TREAZ_0132 PF00293 NUDIX domain TREAZ_0132 PF09297 NADH pyrophosphatase zinc ribbon domain TREAZ_0133 PF05681 Fumarate hydratase (Fumerase) TREAZ_0133 PF05683 Fumarase C-terminus TREAZ_0135 PF01145 SPFH domain / Band 7 family TREAZ_0136 PF01145 SPFH domain / Band 7 family TREAZ_0137 PF01192 RNA polymerase Rpb6 TREAZ_0145 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TREAZ_0145 PF02780 Transketolase, C-terminal domain TREAZ_0145 PF02779 Transketolase, pyrimidine binding domain TREAZ_0146 PF00809 Pterin binding enzyme TREAZ_0147 PF02457 DisA bacterial checkpoint controller nucleotide-binding TREAZ_0149 PF01648 4'-phosphopantetheinyl transferase superfamily TREAZ_0151 PF01416 tRNA pseudouridine synthase TREAZ_0152 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TREAZ_0152 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF TREAZ_0152 PF01189 16S rRNA methyltransferase RsmB/F TREAZ_0153 PF01325 Iron dependent repressor, N-terminal DNA binding domain TREAZ_0153 PF02742 Iron dependent repressor, metal binding and dimerisation domain TREAZ_0153 PF18357 Diphteria toxin repressor SH3 domain TREAZ_0154 PF00580 UvrD/REP helicase N-terminal domain TREAZ_0154 PF13361 UvrD-like helicase C-terminal domain TREAZ_0155 PF01725 Ham1 family TREAZ_0156 PF00672 HAMP domain TREAZ_0156 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_0156 PF00072 Response regulator receiver domain TREAZ_0156 PF01627 Hpt domain TREAZ_0156 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_0156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0157 PF04205 FMN-binding domain TREAZ_0158 PF13407 Periplasmic binding protein domain TREAZ_0159 PF08125 Mannitol dehydrogenase C-terminal domain TREAZ_0159 PF01232 Mannitol dehydrogenase Rossmann domain TREAZ_0160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_0160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_0164 PF03963 Flagellar hook capping protein - N-terminal region TREAZ_0165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREAZ_0165 PF07559 Flagellar basal body protein FlaE TREAZ_0165 PF00460 Flagella basal body rod protein TREAZ_0167 PF01618 MotA/TolQ/ExbB proton channel family TREAZ_0168 PF00691 OmpA family TREAZ_0168 PF13677 Membrane MotB of proton-channel complex MotA/MotB TREAZ_0169 PF03748 Flagellar basal body-associated protein FliL TREAZ_0170 PF02154 Flagellar motor switch protein FliM TREAZ_0170 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TREAZ_0171 PF04509 CheC-like family TREAZ_0171 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TREAZ_0174 PF00813 FliP family TREAZ_0175 PF01313 Bacterial export proteins, family 3 TREAZ_0176 PF01311 Bacterial export proteins, family 1 TREAZ_0177 PF01312 FlhB HrpN YscU SpaS Family TREAZ_0178 PF00771 FHIPEP family TREAZ_0179 PF00448 SRP54-type protein, GTPase domain TREAZ_0180 PF10609 NUBPL iron-transfer P-loop NTPase TREAZ_0182 PF04539 Sigma-70 region 3 TREAZ_0182 PF04545 Sigma-70, region 4 TREAZ_0182 PF04542 Sigma-70 region 2 TREAZ_0188 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0189 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0190 PF01547 Bacterial extracellular solute-binding protein TREAZ_0191 PF02502 Ribose/Galactose Isomerase TREAZ_0192 PF02734 DAK2 domain TREAZ_0193 PF02733 Dak1 domain TREAZ_0196 PF01547 Bacterial extracellular solute-binding protein TREAZ_0197 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0198 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0200 PF00501 AMP-binding enzyme TREAZ_0200 PF13193 AMP-binding enzyme C-terminal domain TREAZ_0201 PF03062 MBOAT, membrane-bound O-acyltransferase family TREAZ_0207 PF02056 Family 4 glycosyl hydrolase TREAZ_0207 PF11975 Family 4 glycosyl hydrolase C-terminal domain TREAZ_0210 PF02311 AraC-like ligand binding domain TREAZ_0210 PF12833 Helix-turn-helix domain TREAZ_0211 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0212 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0219 PF00356 Bacterial regulatory proteins, lacI family TREAZ_0221 PF01116 Fructose-bisphosphate aldolase class-II TREAZ_0222 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREAZ_0222 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREAZ_0230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_0230 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_0231 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREAZ_0231 PF00205 Thiamine pyrophosphate enzyme, central domain TREAZ_0231 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREAZ_0232 PF01261 Xylose isomerase-like TIM barrel TREAZ_0233 PF00672 HAMP domain TREAZ_0233 PF00211 Adenylate and Guanylate cyclase catalytic domain TREAZ_0235 PF02146 Sir2 family TREAZ_0237 PF00749 tRNA synthetases class I (E and Q), catalytic domain TREAZ_0238 PF02127 Aminopeptidase I zinc metalloprotease (M18) TREAZ_0239 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TREAZ_0240 PF17871 AAA lid domain TREAZ_0240 PF07724 AAA domain (Cdc48 subfamily) TREAZ_0240 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_0240 PF10431 C-terminal, D2-small domain, of ClpB protein TREAZ_0240 PF02861 Clp amino terminal domain, pathogenicity island component TREAZ_0241 PF02617 ATP-dependent Clp protease adaptor protein ClpS TREAZ_0245 PF03372 Endonuclease/Exonuclease/phosphatase family TREAZ_0249 PF01351 Ribonuclease HII TREAZ_0254 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TREAZ_0254 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TREAZ_0254 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TREAZ_0254 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TREAZ_0255 PF00266 Aminotransferase class-V TREAZ_0256 PF04324 BFD-like [2Fe-2S] binding domain TREAZ_0256 PF01592 NifU-like N terminal domain TREAZ_0256 PF01106 NifU-like domain TREAZ_0258 PF01209 ubiE/COQ5 methyltransferase family TREAZ_0267 PF00872 Transposase, Mutator family TREAZ_0272 PF00892 EamA-like transporter family TREAZ_0275 PF05958 tRNA (Uracil-5-)-methyltransferase TREAZ_0277 PF12627 Probable RNA and SrmB- binding site of polymerase A TREAZ_0277 PF12626 Polymerase A arginine-rich C-terminus TREAZ_0277 PF01743 Poly A polymerase head domain TREAZ_0282 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TREAZ_0282 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TREAZ_0286 PF00849 RNA pseudouridylate synthase TREAZ_0289 PF12838 4Fe-4S dicluster domain TREAZ_0289 PF13375 RnfC Barrel sandwich hybrid domain TREAZ_0289 PF10531 SLBB domain TREAZ_0289 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREAZ_0290 PF03116 NQR2, RnfD, RnfE family TREAZ_0293 PF02508 Rnf-Nqr subunit, membrane protein TREAZ_0295 PF09094 Domain of unknown function (DUF1925) TREAZ_0295 PF09095 Domain of unknown function (DUF1926) TREAZ_0295 PF03065 Glycosyl hydrolase family 57 TREAZ_0296 PF01588 Putative tRNA binding domain TREAZ_0296 PF09334 tRNA synthetases class I (M) TREAZ_0298 PF12838 4Fe-4S dicluster domain TREAZ_0298 PF13375 RnfC Barrel sandwich hybrid domain TREAZ_0298 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREAZ_0302 PF17954 Quercetinase C-terminal cupin domain TREAZ_0302 PF02678 Pirin TREAZ_0311 PF11798 IMS family HHH motif TREAZ_0311 PF11799 impB/mucB/samB family C-terminal domain TREAZ_0311 PF00817 impB/mucB/samB family TREAZ_0312 PF02811 PHP domain TREAZ_0312 PF14579 Helix-hairpin-helix motif TREAZ_0312 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREAZ_0312 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREAZ_0315 PF00665 Integrase core domain TREAZ_0317 PF00665 Integrase core domain TREAZ_0321 PF00589 Phage integrase family TREAZ_0321 PF12167 Arm DNA-binding domain TREAZ_0327 PF07196 Flagellin hook IN motif TREAZ_0327 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREAZ_0328 PF00669 Bacterial flagellin N-terminal helical region TREAZ_0328 PF00700 Bacterial flagellin C-terminal helical region TREAZ_0329 PF02623 FliW protein TREAZ_0330 PF02599 Global regulator protein family TREAZ_0331 PF00672 HAMP domain TREAZ_0331 PF01966 HD domain TREAZ_0332 PF00814 Glycoprotease family TREAZ_0333 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TREAZ_0337 PF02465 Flagellar hook-associated protein 2 N-terminus TREAZ_0337 PF07195 Flagellar hook-associated protein 2 C-terminus TREAZ_0340 PF00700 Bacterial flagellin C-terminal helical region TREAZ_0340 PF00669 Bacterial flagellin N-terminal helical region TREAZ_0341 PF00669 Bacterial flagellin N-terminal helical region TREAZ_0341 PF00700 Bacterial flagellin C-terminal helical region TREAZ_0342 PF01554 MatE TREAZ_0343 PF13472 GDSL-like Lipase/Acylhydrolase family TREAZ_0343 PF07859 alpha/beta hydrolase fold TREAZ_0345 PF04205 FMN-binding domain TREAZ_0345 PF03358 NADPH-dependent FMN reductase TREAZ_0345 PF00890 FAD binding domain TREAZ_0346 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_0346 PF12002 MgsA AAA+ ATPase C terminal TREAZ_0346 PF16193 AAA C-terminal domain TREAZ_0352 PF00672 HAMP domain TREAZ_0352 PF01966 HD domain TREAZ_0353 PF00072 Response regulator receiver domain TREAZ_0356 PF00589 Phage integrase family TREAZ_0356 PF02899 Phage integrase, N-terminal SAM-like domain TREAZ_0365 PF13614 AAA domain TREAZ_0371 PF13443 Cro/C1-type HTH DNA-binding domain TREAZ_0384 PF00271 Helicase conserved C-terminal domain TREAZ_0384 PF00176 SNF2 family N-terminal domain TREAZ_0401 PF00753 Metallo-beta-lactamase superfamily TREAZ_0401 PF12706 Beta-lactamase superfamily domain TREAZ_0402 PF13732 Domain of unknown function (DUF4162) TREAZ_0402 PF00005 ABC transporter TREAZ_0414 PF01668 SmpB protein TREAZ_0415 PF08308 PEGA domain TREAZ_0415 PF03781 Sulfatase-modifying factor enzyme 1 TREAZ_0416 PF10502 Signal peptidase, peptidase S26 TREAZ_0418 PF06969 HemN C-terminal domain TREAZ_0418 PF04055 Radical SAM superfamily TREAZ_0422 PF00672 HAMP domain TREAZ_0422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0422 PF07730 Histidine kinase TREAZ_0423 PF00072 Response regulator receiver domain TREAZ_0423 PF00196 Bacterial regulatory proteins, luxR family TREAZ_0430 PF04408 Helicase associated domain (HA2) TREAZ_0430 PF00270 DEAD/DEAH box helicase TREAZ_0430 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TREAZ_0430 PF00271 Helicase conserved C-terminal domain TREAZ_0431 PF02896 PEP-utilising enzyme, TIM barrel domain TREAZ_0431 PF00391 PEP-utilising enzyme, mobile domain TREAZ_0431 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TREAZ_0432 PF00248 Aldo/keto reductase family TREAZ_0434 PF17932 Tetracyclin repressor-like, C-terminal domain TREAZ_0434 PF00440 Bacterial regulatory proteins, tetR family TREAZ_0438 PF08402 TOBE domain TREAZ_0438 PF00005 ABC transporter TREAZ_0445 PF00005 ABC transporter TREAZ_0446 PF02632 BioY family TREAZ_0447 PF02237 Biotin protein ligase C terminal domain TREAZ_0447 PF03099 Biotin/lipoate A/B protein ligase family TREAZ_0448 PF00211 Adenylate and Guanylate cyclase catalytic domain TREAZ_0450 PF03358 NADPH-dependent FMN reductase TREAZ_0451 PF00672 HAMP domain TREAZ_0451 PF00211 Adenylate and Guanylate cyclase catalytic domain TREAZ_0451 PF02743 Cache domain TREAZ_0453 PF10509 Galactokinase galactose-binding signature TREAZ_0453 PF08544 GHMP kinases C terminal TREAZ_0454 PF01975 Survival protein SurE TREAZ_0458 PF02568 Thiamine biosynthesis protein (ThiI) TREAZ_0458 PF02926 THUMP domain TREAZ_0459 PF00266 Aminotransferase class-V TREAZ_0460 PF01022 Bacterial regulatory protein, arsR family TREAZ_0461 PF00742 Homoserine dehydrogenase TREAZ_0461 PF13840 ACT domain TREAZ_0461 PF01842 ACT domain TREAZ_0461 PF00696 Amino acid kinase family TREAZ_0461 PF03447 Homoserine dehydrogenase, NAD binding domain TREAZ_0464 PF13685 Iron-containing alcohol dehydrogenase TREAZ_0465 PF00155 Aminotransferase class I and II TREAZ_0466 PF13393 Histidyl-tRNA synthetase TREAZ_0469 PF08666 SAF domain TREAZ_0469 PF03102 NeuB family TREAZ_0472 PF01709 Transcriptional regulator TREAZ_0473 PF02075 Crossover junction endodeoxyribonuclease RuvC TREAZ_0477 PF01330 RuvA N terminal domain TREAZ_0478 PF05496 Holliday junction DNA helicase RuvB P-loop domain TREAZ_0478 PF17864 RuvB AAA lid domain TREAZ_0478 PF05491 RuvB C-terminal winged helix domain TREAZ_0479 PF02547 Queuosine biosynthesis protein TREAZ_0483 PF02618 YceG-like family TREAZ_0484 PF08275 DNA primase catalytic core, N-terminal domain TREAZ_0484 PF10410 DnaB-helicase binding domain of primase TREAZ_0484 PF01807 CHC2 zinc finger TREAZ_0485 PF00140 Sigma-70 factor, region 1.2 TREAZ_0485 PF03979 Sigma-70 factor, region 1.1 TREAZ_0485 PF04542 Sigma-70 region 2 TREAZ_0485 PF04539 Sigma-70 region 3 TREAZ_0485 PF04545 Sigma-70, region 4 TREAZ_0490 PF04085 rod shape-determining protein MreC TREAZ_0492 PF00905 Penicillin binding protein transpeptidase domain TREAZ_0492 PF03717 Penicillin-binding Protein dimerisation domain TREAZ_0493 PF01098 Cell cycle protein TREAZ_0495 PF00589 Phage integrase family TREAZ_0495 PF02899 Phage integrase, N-terminal SAM-like domain TREAZ_0496 PF02386 Cation transport protein TREAZ_0502 PF00872 Transposase, Mutator family TREAZ_0506 PF13185 GAF domain TREAZ_0506 PF02954 Bacterial regulatory protein, Fis family TREAZ_0506 PF00158 Sigma-54 interaction domain TREAZ_0507 PF00575 S1 RNA binding domain TREAZ_0508 PF00849 RNA pseudouridylate synthase TREAZ_0508 PF01479 S4 domain TREAZ_0510 PF02616 Segregation and condensation protein ScpA TREAZ_0512 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TREAZ_0514 PF00154 recA bacterial DNA recombination protein TREAZ_0516 PF14572 Phosphoribosyl synthetase-associated domain TREAZ_0516 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TREAZ_0518 PF03781 Sulfatase-modifying factor enzyme 1 TREAZ_0525 PF00005 ABC transporter TREAZ_0527 PF02580 D-Tyr-tRNA(Tyr) deacylase TREAZ_0531 PF00834 Ribulose-phosphate 3 epimerase family TREAZ_0536 PF17853 GGDEF-like domain TREAZ_0536 PF12833 Helix-turn-helix domain TREAZ_0537 PF01702 Queuine tRNA-ribosyltransferase TREAZ_0540 PF00692 dUTPase TREAZ_0541 PF00013 KH domain TREAZ_0541 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TREAZ_0541 PF00575 S1 RNA binding domain TREAZ_0541 PF01138 3' exoribonuclease family, domain 1 TREAZ_0541 PF03725 3' exoribonuclease family, domain 2 TREAZ_0542 PF00312 Ribosomal protein S15 TREAZ_0543 PF01509 TruB family pseudouridylate synthase (N terminal domain) TREAZ_0544 PF02033 Ribosome-binding factor A TREAZ_0545 PF11987 Translation-initiation factor 2 TREAZ_0545 PF00009 Elongation factor Tu GTP binding domain TREAZ_0545 PF04760 Translation initiation factor IF-2, N-terminal region TREAZ_0546 PF13184 NusA-like KH domain TREAZ_0546 PF08529 NusA N-terminal domain TREAZ_0546 PF00575 S1 RNA binding domain TREAZ_0547 PF17384 RimP C-terminal SH3 domain TREAZ_0547 PF02576 RimP N-terminal domain TREAZ_0548 PF02743 Cache domain TREAZ_0548 PF00672 HAMP domain TREAZ_0548 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_0550 PF00488 MutS domain V TREAZ_0550 PF05190 MutS family domain IV TREAZ_0550 PF05192 MutS domain III TREAZ_0550 PF05188 MutS domain II TREAZ_0550 PF01624 MutS domain I TREAZ_0552 PF07244 Surface antigen variable number repeat TREAZ_0552 PF01103 Surface antigen TREAZ_0555 PF02223 Thymidylate kinase TREAZ_0561 PF03313 Serine dehydratase alpha chain TREAZ_0562 PF00005 ABC transporter TREAZ_0563 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0565 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_0565 PF01627 Hpt domain TREAZ_0565 PF00072 Response regulator receiver domain TREAZ_0568 PF08482 ATP-dependent helicase C-terminal TREAZ_0568 PF00270 DEAD/DEAH box helicase TREAZ_0568 PF04408 Helicase associated domain (HA2) TREAZ_0568 PF00271 Helicase conserved C-terminal domain TREAZ_0569 PF03120 NAD-dependent DNA ligase OB-fold domain TREAZ_0569 PF01653 NAD-dependent DNA ligase adenylation domain TREAZ_0569 PF00533 BRCA1 C Terminus (BRCT) domain TREAZ_0570 PF02390 Putative methyltransferase TREAZ_0572 PF01042 Endoribonuclease L-PSP TREAZ_0586 PF13307 Helicase C-terminal domain TREAZ_0586 PF06733 DEAD_2 TREAZ_0589 PF00589 Phage integrase family TREAZ_0589 PF13495 Phage integrase, N-terminal SAM-like domain TREAZ_0616 PF02545 Maf-like protein TREAZ_0617 PF00318 Ribosomal protein S2 TREAZ_0618 PF00889 Elongation factor TS TREAZ_0619 PF01765 Ribosome recycling factor TREAZ_0620 PF01255 Putative undecaprenyl diphosphate synthase TREAZ_0622 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TREAZ_0622 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TREAZ_0622 PF13288 DXP reductoisomerase C-terminal domain TREAZ_0623 PF17820 PDZ domain TREAZ_0623 PF02163 Peptidase family M50 TREAZ_0627 PF03796 DnaB-like helicase C terminal domain TREAZ_0627 PF00772 DnaB-like helicase N terminal domain TREAZ_0628 PF01281 Ribosomal protein L9, N-terminal domain TREAZ_0628 PF03948 Ribosomal protein L9, C-terminal domain TREAZ_0630 PF01084 Ribosomal protein S18 TREAZ_0631 PF00436 Single-strand binding protein family TREAZ_0632 PF01250 Ribosomal protein S6 TREAZ_0634 PF13847 Methyltransferase domain TREAZ_0637 PF04055 Radical SAM superfamily TREAZ_0638 PF04286 Protein of unknown function (DUF445) TREAZ_0640 PF00293 NUDIX domain TREAZ_0644 PF03853 YjeF-related protein N-terminus TREAZ_0644 PF01256 Carbohydrate kinase TREAZ_0646 PF12804 MobA-like NTP transferase domain TREAZ_0648 PF08402 TOBE domain TREAZ_0648 PF00005 ABC transporter TREAZ_0653 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system TREAZ_0656 PF07517 SecA DEAD-like domain TREAZ_0656 PF01043 SecA preprotein cross-linking domain TREAZ_0656 PF07516 SecA Wing and Scaffold domain TREAZ_0656 PF02810 SEC-C motif TREAZ_0657 PF03330 Lytic transglycolase TREAZ_0660 PF02719 Polysaccharide biosynthesis protein TREAZ_0661 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREAZ_0663 PF00111 2Fe-2S iron-sulfur cluster binding domain TREAZ_0663 PF01799 [2Fe-2S] binding domain TREAZ_0665 PF01761 3-dehydroquinate synthase TREAZ_0667 PF13749 Putative ATP-dependent DNA helicase recG C-terminal TREAZ_0667 PF17191 RecG wedge domain TREAZ_0667 PF00270 DEAD/DEAH box helicase TREAZ_0668 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TREAZ_0668 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TREAZ_0668 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TREAZ_0672 PF00535 Glycosyl transferase family 2 TREAZ_0675 PF01501 Glycosyl transferase family 8 TREAZ_0675 PF00535 Glycosyl transferase family 2 TREAZ_0676 PF08645 Polynucleotide kinase 3 phosphatase TREAZ_0677 PF00288 GHMP kinases N terminal domain TREAZ_0677 PF08544 GHMP kinases C terminal TREAZ_0678 PF01370 NAD dependent epimerase/dehydratase family TREAZ_0682 PF14849 YidC periplasmic domain TREAZ_0682 PF02096 60Kd inner membrane protein TREAZ_0690 PF02096 60Kd inner membrane protein TREAZ_0693 PF01066 CDP-alcohol phosphatidyltransferase TREAZ_0693 PF00483 Nucleotidyl transferase TREAZ_0695 PF02397 Bacterial sugar transferase TREAZ_0700 PF03755 YicC-like family, N-terminal region TREAZ_0700 PF08340 Domain of unknown function (DUF1732) TREAZ_0701 PF02875 Mur ligase family, glutamate ligase domain TREAZ_0701 PF08245 Mur ligase middle domain TREAZ_0701 PF01225 Mur ligase family, catalytic domain TREAZ_0702 PF00849 RNA pseudouridylate synthase TREAZ_0702 PF01479 S4 domain TREAZ_0703 PF08245 Mur ligase middle domain TREAZ_0703 PF02875 Mur ligase family, glutamate ligase domain TREAZ_0704 PF00849 RNA pseudouridylate synthase TREAZ_0707 PF01168 Alanine racemase, N-terminal domain TREAZ_0708 PF00398 Ribosomal RNA adenine dimethylase TREAZ_0717 PF00460 Flagella basal body rod protein TREAZ_0717 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREAZ_0718 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREAZ_0718 PF00460 Flagella basal body rod protein TREAZ_0720 PF03746 LamB/YcsF family TREAZ_0721 PF07286 Protein of unknown function (DUF1445) TREAZ_0722 PF02626 Carboxyltransferase domain, subdomain A and B TREAZ_0723 PF02682 Carboxyltransferase domain, subdomain C and D TREAZ_0725 PF01063 Amino-transferase class IV TREAZ_0730 PF13173 AAA domain TREAZ_0730 PF13635 Domain of unknown function (DUF4143) TREAZ_0732 PF12558 ATP-binding cassette cobalt transporter TREAZ_0732 PF00005 ABC transporter TREAZ_0733 PF07155 ECF-type riboflavin transporter, S component TREAZ_0735 PF05698 Bacterial trigger factor protein (TF) C-terminus TREAZ_0735 PF05697 Bacterial trigger factor protein (TF) TREAZ_0735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREAZ_0736 PF00574 Clp protease TREAZ_0737 PF07724 AAA domain (Cdc48 subfamily) TREAZ_0737 PF10431 C-terminal, D2-small domain, of ClpB protein TREAZ_0737 PF06689 ClpX C4-type zinc finger TREAZ_0738 PF05362 Lon protease (S16) C-terminal proteolytic domain TREAZ_0738 PF02190 ATP-dependent protease La (LON) substrate-binding domain TREAZ_0738 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_0739 PF03358 NADPH-dependent FMN reductase TREAZ_0740 PF02743 Cache domain TREAZ_0740 PF00672 HAMP domain TREAZ_0740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_0744 PF13439 Glycosyltransferase Family 4 TREAZ_0744 PF00534 Glycosyl transferases group 1 TREAZ_0745 PF11975 Family 4 glycosyl hydrolase C-terminal domain TREAZ_0745 PF02056 Family 4 glycosyl hydrolase TREAZ_0746 PF03477 ATP cone domain TREAZ_0749 PF04055 Radical SAM superfamily TREAZ_0749 PF06463 Molybdenum Cofactor Synthesis C TREAZ_0754 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TREAZ_0754 PF18074 Primosomal protein N C-terminal domain TREAZ_0754 PF00270 DEAD/DEAH box helicase TREAZ_0754 PF00271 Helicase conserved C-terminal domain TREAZ_0754 PF17764 3′ DNA-binding domain (3′BD) TREAZ_0755 PF13673 Acetyltransferase (GNAT) domain TREAZ_0758 PF03330 Lytic transglycolase TREAZ_0758 PF05036 Sporulation related domain TREAZ_0760 PF09369 Domain of unknown function (DUF1998) TREAZ_0760 PF00271 Helicase conserved C-terminal domain TREAZ_0760 PF00270 DEAD/DEAH box helicase TREAZ_0761 PF10431 C-terminal, D2-small domain, of ClpB protein TREAZ_0761 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_0761 PF07724 AAA domain (Cdc48 subfamily) TREAZ_0761 PF17871 AAA lid domain TREAZ_0761 PF02861 Clp amino terminal domain, pathogenicity island component TREAZ_0765 PF03781 Sulfatase-modifying factor enzyme 1 TREAZ_0766 PF13545 Crp-like helix-turn-helix domain TREAZ_0766 PF00027 Cyclic nucleotide-binding domain TREAZ_0768 PF01565 FAD binding domain TREAZ_0768 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TREAZ_0769 PF09190 DALR domain TREAZ_0769 PF01406 tRNA synthetases class I (C) catalytic domain TREAZ_0770 PF04545 Sigma-70, region 4 TREAZ_0770 PF04539 Sigma-70 region 3 TREAZ_0770 PF04542 Sigma-70 region 2 TREAZ_0774 PF00696 Amino acid kinase family TREAZ_0775 PF00365 Phosphofructokinase TREAZ_0793 PF07728 AAA domain (dynein-related subfamily) TREAZ_0795 PF05762 VWA domain containing CoxE-like protein TREAZ_0800 PF01966 HD domain TREAZ_0815 PF17131 Outer membrane lipoprotein-sorting protein TREAZ_0817 PF00440 Bacterial regulatory proteins, tetR family TREAZ_0818 PF00704 Glycosyl hydrolases family 18 TREAZ_0819 PF09308 LuxQ, periplasmic TREAZ_0819 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_0819 PF00072 Response regulator receiver domain TREAZ_0819 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0824 PF02463 RecF/RecN/SMC N terminal domain TREAZ_0825 PF01513 ATP-NAD kinase TREAZ_0827 PF01584 CheW-like domain TREAZ_0828 PF07687 Peptidase dimerisation domain TREAZ_0828 PF01546 Peptidase family M20/M25/M40 TREAZ_0831 PF02653 Branched-chain amino acid transport system / permease component TREAZ_0832 PF00005 ABC transporter TREAZ_0833 PF13407 Periplasmic binding protein domain TREAZ_0834 PF12833 Helix-turn-helix domain TREAZ_0834 PF10114 Sensory domain found in PocR TREAZ_0847 PF03687 Uncharacterised protein family (UPF0164) TREAZ_0848 PF09210 Domain of unknown function (DUF1957) TREAZ_0848 PF03065 Glycosyl hydrolase family 57 TREAZ_0850 PF01479 S4 domain TREAZ_0850 PF00849 RNA pseudouridylate synthase TREAZ_0853 PF05524 PEP-utilising enzyme, N-terminal TREAZ_0853 PF00381 PTS HPr component phosphorylation site TREAZ_0853 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREAZ_0853 PF02896 PEP-utilising enzyme, TIM barrel domain TREAZ_0853 PF00391 PEP-utilising enzyme, mobile domain TREAZ_0854 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TREAZ_0858 PF08241 Methyltransferase domain TREAZ_0859 PF13419 Haloacid dehalogenase-like hydrolase TREAZ_0861 PF00694 Aconitase C-terminal domain TREAZ_0861 PF00330 Aconitase family (aconitate hydratase) TREAZ_0863 PF16314 Domain of unknown function (DUF4954) TREAZ_0865 PF02308 MgtC family TREAZ_0867 PF14572 Phosphoribosyl synthetase-associated domain TREAZ_0867 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TREAZ_0868 PF00691 OmpA family TREAZ_0871 PF13186 Iron-sulfur cluster-binding domain TREAZ_0871 PF04055 Radical SAM superfamily TREAZ_0874 PF00665 Integrase core domain TREAZ_0879 PF00672 HAMP domain TREAZ_0879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0879 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_0879 PF01627 Hpt domain TREAZ_0879 PF00072 Response regulator receiver domain TREAZ_0879 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_0880 PF00072 Response regulator receiver domain TREAZ_0881 PF00196 Bacterial regulatory proteins, luxR family TREAZ_0881 PF03472 Autoinducer binding domain TREAZ_0882 PF00072 Response regulator receiver domain TREAZ_0882 PF01627 Hpt domain TREAZ_0882 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_0882 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0882 PF00672 HAMP domain TREAZ_0882 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_0883 PF00072 Response regulator receiver domain TREAZ_0884 PF00857 Isochorismatase family TREAZ_0885 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain TREAZ_0885 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TREAZ_0885 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TREAZ_0886 PF03129 Anticodon binding domain TREAZ_0886 PF02824 TGS domain TREAZ_0886 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREAZ_0886 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREAZ_0888 PF18269 T3SS EscN ATPase C-terminal domain TREAZ_0888 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREAZ_0888 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREAZ_0889 PF02108 Flagellar assembly protein FliH TREAZ_0890 PF14842 FliG N-terminal domain TREAZ_0890 PF14841 FliG middle domain TREAZ_0890 PF01706 FliG C-terminal domain TREAZ_0891 PF01514 Secretory protein of YscJ/FliF family TREAZ_0891 PF08345 Flagellar M-ring protein C-terminal TREAZ_0892 PF02049 Flagellar hook-basal body complex protein FliE TREAZ_0893 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREAZ_0893 PF00460 Flagella basal body rod protein TREAZ_0895 PF07724 AAA domain (Cdc48 subfamily) TREAZ_0895 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_0896 PF00227 Proteasome subunit TREAZ_0897 PF00589 Phage integrase family TREAZ_0897 PF02899 Phage integrase, N-terminal SAM-like domain TREAZ_0898 PF01131 DNA topoisomerase TREAZ_0898 PF01751 Toprim domain TREAZ_0898 PF01396 Topoisomerase DNA binding C4 zinc finger TREAZ_0899 PF02481 DNA recombination-mediator protein A TREAZ_0899 PF17782 DprA winged helix domain TREAZ_0901 PF02899 Phage integrase, N-terminal SAM-like domain TREAZ_0901 PF00589 Phage integrase family TREAZ_0902 PF00091 Tubulin/FtsZ family, GTPase domain TREAZ_0902 PF12327 FtsZ family, C-terminal domain TREAZ_0903 PF02491 SHS2 domain inserted in FTSA TREAZ_0905 PF01098 Cell cycle protein TREAZ_0906 PF00953 Glycosyl transferase family 4 TREAZ_0906 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TREAZ_0907 PF01225 Mur ligase family, catalytic domain TREAZ_0907 PF02875 Mur ligase family, glutamate ligase domain TREAZ_0907 PF08245 Mur ligase middle domain TREAZ_0909 PF01795 MraW methylase family TREAZ_0910 PF02381 MraZ protein, putative antitoxin-like TREAZ_0916 PF01116 Fructose-bisphosphate aldolase class-II TREAZ_0918 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_0918 PF09308 LuxQ, periplasmic TREAZ_0918 PF00072 Response regulator receiver domain TREAZ_0918 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0919 PF05198 Translation initiation factor IF-3, N-terminal domain TREAZ_0919 PF00707 Translation initiation factor IF-3, C-terminal domain TREAZ_0920 PF01632 Ribosomal protein L35 TREAZ_0921 PF00453 Ribosomal protein L20 TREAZ_0923 PF01238 Phosphomannose isomerase type I TREAZ_0924 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TREAZ_0925 PF11849 Domain of unknown function (DUF3369) TREAZ_0926 PF05698 Bacterial trigger factor protein (TF) C-terminus TREAZ_0929 PF03099 Biotin/lipoate A/B protein ligase family TREAZ_0931 PF04055 Radical SAM superfamily TREAZ_0931 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family TREAZ_0933 PF01590 GAF domain TREAZ_0933 PF00990 Diguanylate cyclase, GGDEF domain TREAZ_0933 PF00563 EAL domain TREAZ_0933 PF00360 Phytochrome region TREAZ_0934 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_0934 PF09308 LuxQ, periplasmic TREAZ_0934 PF00072 Response regulator receiver domain TREAZ_0934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_0935 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TREAZ_0936 PF00682 HMGL-like TREAZ_0936 PF02436 Conserved carboxylase domain TREAZ_0938 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TREAZ_0938 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TREAZ_0938 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TREAZ_0938 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TREAZ_0939 PF00929 Exonuclease TREAZ_0940 PF16811 TRAP transporter T-component TREAZ_0942 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREAZ_0945 PF00005 ABC transporter TREAZ_0946 PF04539 Sigma-70 region 3 TREAZ_0946 PF03979 Sigma-70 factor, region 1.1 TREAZ_0946 PF00140 Sigma-70 factor, region 1.2 TREAZ_0946 PF04542 Sigma-70 region 2 TREAZ_0946 PF04545 Sigma-70, region 4 TREAZ_0947 PF05257 CHAP domain TREAZ_0947 PF01476 LysM domain TREAZ_0949 PF00294 pfkB family carbohydrate kinase TREAZ_0953 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_0953 PF00672 HAMP domain TREAZ_0953 PF02743 Cache domain TREAZ_0958 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREAZ_0959 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0961 PF00005 ABC transporter TREAZ_0961 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_0963 PF05167 Uncharacterised ACR (DUF711) TREAZ_0971 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0972 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0975 PF00342 Phosphoglucose isomerase TREAZ_0976 PF02863 Arginine repressor, C-terminal domain TREAZ_0976 PF01316 Arginine repressor, DNA binding domain TREAZ_0980 PF00356 Bacterial regulatory proteins, lacI family TREAZ_0982 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0983 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0987 PF00248 Aldo/keto reductase family TREAZ_0990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_0990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_0991 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0992 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_0993 PF01547 Bacterial extracellular solute-binding protein TREAZ_0995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREAZ_0995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREAZ_0996 PF01261 Xylose isomerase-like TIM barrel TREAZ_0997 PF00356 Bacterial regulatory proteins, lacI family TREAZ_0999 PF11975 Family 4 glycosyl hydrolase C-terminal domain TREAZ_0999 PF02056 Family 4 glycosyl hydrolase TREAZ_1000 PF00488 MutS domain V TREAZ_1000 PF01713 Smr domain TREAZ_1001 PF03193 RsgA GTPase TREAZ_1001 PF16745 RsgA N-terminal domain TREAZ_1005 PF00753 Metallo-beta-lactamase superfamily TREAZ_1008 PF02594 Uncharacterised ACR, YggU family COG1872 TREAZ_1009 PF00180 Isocitrate/isopropylmalate dehydrogenase TREAZ_1010 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_1010 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_1011 PF02653 Branched-chain amino acid transport system / permease component TREAZ_1012 PF00005 ABC transporter TREAZ_1013 PF13407 Periplasmic binding protein domain TREAZ_1016 PF13580 SIS domain TREAZ_1018 PF00480 ROK family TREAZ_1025 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TREAZ_1025 PF01676 Metalloenzyme superfamily TREAZ_1028 PF07944 Beta-L-arabinofuranosidase, GH127 TREAZ_1047 PF01336 OB-fold nucleic acid binding domain TREAZ_1047 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREAZ_1047 PF14579 Helix-hairpin-helix motif TREAZ_1047 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREAZ_1047 PF02811 PHP domain TREAZ_1050 PF01726 LexA DNA binding domain TREAZ_1050 PF00717 Peptidase S24-like TREAZ_1058 PF01555 DNA methylase TREAZ_1068 PF00196 Bacterial regulatory proteins, luxR family TREAZ_1068 PF00072 Response regulator receiver domain TREAZ_1076 PF00012 Hsp70 protein TREAZ_1077 PF00012 Hsp70 protein TREAZ_1082 PF00248 Aldo/keto reductase family TREAZ_1083 PF00248 Aldo/keto reductase family TREAZ_1090 PF13187 4Fe-4S dicluster domain TREAZ_1091 PF01551 Peptidase family M23 TREAZ_1091 PF01464 Transglycosylase SLT domain TREAZ_1091 PF10145 Phage-related minor tail protein TREAZ_1094 PF17092 Penicillin-binding protein OB-like domain TREAZ_1094 PF00905 Penicillin binding protein transpeptidase domain TREAZ_1094 PF00912 Transglycosylase TREAZ_1095 PF17762 HTH domain found in ParB protein TREAZ_1095 PF02195 ParB-like nuclease domain TREAZ_1096 PF09308 LuxQ, periplasmic TREAZ_1096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1096 PF00072 Response regulator receiver domain TREAZ_1096 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1097 PF04199 Putative cyclase TREAZ_1098 PF03764 Elongation factor G, domain IV TREAZ_1098 PF14492 Elongation Factor G, domain II TREAZ_1098 PF03144 Elongation factor Tu domain 2 TREAZ_1098 PF00009 Elongation factor Tu GTP binding domain TREAZ_1098 PF00679 Elongation factor G C-terminus TREAZ_1099 PF00334 Nucleoside diphosphate kinase TREAZ_1100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREAZ_1100 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TREAZ_1101 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREAZ_1101 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TREAZ_1102 PF00753 Metallo-beta-lactamase superfamily TREAZ_1102 PF16123 Hydroxyacylglutathione hydrolase C-terminus TREAZ_1108 PF04474 Protein of unknown function (DUF554) TREAZ_1109 PF00248 Aldo/keto reductase family TREAZ_1112 PF01479 S4 domain TREAZ_1112 PF00849 RNA pseudouridylate synthase TREAZ_1113 PF00933 Glycosyl hydrolase family 3 N terminal domain TREAZ_1116 PF01554 MatE TREAZ_1117 PF01554 MatE TREAZ_1118 PF01336 OB-fold nucleic acid binding domain TREAZ_1118 PF00152 tRNA synthetases class II (D, K and N) TREAZ_1120 PF00149 Calcineurin-like phosphoesterase TREAZ_1122 PF00535 Glycosyl transferase family 2 TREAZ_1130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREAZ_1143 PF00722 Glycosyl hydrolases family 16 TREAZ_1147 PF03062 MBOAT, membrane-bound O-acyltransferase family TREAZ_1149 PF07238 PilZ domain TREAZ_1149 PF00535 Glycosyl transferase family 2 TREAZ_1157 PF00072 Response regulator receiver domain TREAZ_1157 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1157 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_1157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1157 PF00672 HAMP domain TREAZ_1157 PF01627 Hpt domain TREAZ_1159 PF11798 IMS family HHH motif TREAZ_1159 PF11799 impB/mucB/samB family C-terminal domain TREAZ_1159 PF00817 impB/mucB/samB family TREAZ_1165 PF00005 ABC transporter TREAZ_1172 PF07732 Multicopper oxidase TREAZ_1172 PF07731 Multicopper oxidase TREAZ_1175 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TREAZ_1175 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TREAZ_1179 PF04055 Radical SAM superfamily TREAZ_1179 PF00919 Uncharacterized protein family UPF0004 TREAZ_1185 PF01515 Phosphate acetyl/butaryl transferase TREAZ_1186 PF13174 Tetratricopeptide repeat TREAZ_1186 PF13176 Tetratricopeptide repeat TREAZ_1188 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TREAZ_1195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREAZ_1196 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1197 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1198 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_1198 PF00005 ABC transporter TREAZ_1199 PF00005 ABC transporter TREAZ_1199 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_1201 PF01554 MatE TREAZ_1202 PF04620 Flagellar filament outer layer protein Flaa TREAZ_1204 PF01520 N-acetylmuramoyl-L-alanine amidase TREAZ_1205 PF02655 ATP-grasp domain TREAZ_1205 PF00206 Lyase TREAZ_1207 PF02348 Cytidylyltransferase TREAZ_1209 PF13186 Iron-sulfur cluster-binding domain TREAZ_1211 PF00591 Glycosyl transferase family, a/b domain TREAZ_1211 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TREAZ_1211 PF02885 Glycosyl transferase family, helical bundle domain TREAZ_1212 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TREAZ_1212 PF17768 RecJ OB domain TREAZ_1212 PF01368 DHH family TREAZ_1212 PF02272 DHHA1 domain TREAZ_1213 PF01551 Peptidase family M23 TREAZ_1214 PF01165 Ribosomal protein S21 TREAZ_1219 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TREAZ_1219 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TREAZ_1220 PF00698 Acyl transferase domain TREAZ_1222 PF00109 Beta-ketoacyl synthase, N-terminal domain TREAZ_1222 PF02801 Beta-ketoacyl synthase, C-terminal domain TREAZ_1223 PF07977 FabA-like domain TREAZ_1224 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TREAZ_1224 PF12241 Trans-2-enoyl-CoA reductase catalytic region TREAZ_1224 PF07055 Enoyl reductase FAD binding domain TREAZ_1225 PF00364 Biotin-requiring enzyme TREAZ_1226 PF00289 Biotin carboxylase, N-terminal domain TREAZ_1226 PF02785 Biotin carboxylase C-terminal domain TREAZ_1226 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TREAZ_1227 PF01039 Carboxyl transferase domain TREAZ_1228 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TREAZ_1231 PF01048 Phosphorylase superfamily TREAZ_1236 PF00873 AcrB/AcrD/AcrF family TREAZ_1249 PF04073 Aminoacyl-tRNA editing domain TREAZ_1249 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREAZ_1249 PF03129 Anticodon binding domain TREAZ_1250 PF00703 Glycosyl hydrolases family 2 TREAZ_1250 PF16353 Domain of unknown function(DUF4981) TREAZ_1250 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TREAZ_1250 PF02929 Beta galactosidase small chain TREAZ_1250 PF02837 Glycosyl hydrolases family 2, sugar binding domain TREAZ_1258 PF12344 Ultra-violet resistance protein B TREAZ_1258 PF02151 UvrB/uvrC motif TREAZ_1258 PF00271 Helicase conserved C-terminal domain TREAZ_1258 PF17757 UvrB interaction domain TREAZ_1258 PF04851 Type III restriction enzyme, res subunit TREAZ_1261 PF02361 Cobalt transport protein TREAZ_1265 PF00923 Transaldolase/Fructose-6-phosphate aldolase TREAZ_1266 PF05036 Sporulation related domain TREAZ_1266 PF03330 Lytic transglycolase TREAZ_1268 PF00950 ABC 3 transport family TREAZ_1269 PF03749 Sugar fermentation stimulation protein RE domain TREAZ_1269 PF17746 SfsA N-terminal OB domain TREAZ_1270 PF00005 ABC transporter TREAZ_1274 PF00403 Heavy-metal-associated domain TREAZ_1279 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREAZ_1280 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1281 PF00005 ABC transporter TREAZ_1282 PF04983 RNA polymerase Rpb1, domain 3 TREAZ_1282 PF00623 RNA polymerase Rpb1, domain 2 TREAZ_1282 PF04998 RNA polymerase Rpb1, domain 5 TREAZ_1282 PF04997 RNA polymerase Rpb1, domain 1 TREAZ_1282 PF05000 RNA polymerase Rpb1, domain 4 TREAZ_1283 PF04560 RNA polymerase Rpb2, domain 7 TREAZ_1283 PF04563 RNA polymerase beta subunit TREAZ_1283 PF04565 RNA polymerase Rpb2, domain 3 TREAZ_1283 PF04561 RNA polymerase Rpb2, domain 2 TREAZ_1283 PF00562 RNA polymerase Rpb2, domain 6 TREAZ_1283 PF10385 RNA polymerase beta subunit external 1 domain TREAZ_1284 PF16320 Ribosomal protein L7/L12 dimerisation domain TREAZ_1284 PF00542 Ribosomal protein L7/L12 C-terminal domain TREAZ_1285 PF00466 Ribosomal protein L10 TREAZ_1286 PF00687 Ribosomal protein L1p/L10e family TREAZ_1287 PF03946 Ribosomal protein L11, N-terminal domain TREAZ_1287 PF00298 Ribosomal protein L11, RNA binding domain TREAZ_1288 PF00467 KOW motif TREAZ_1288 PF02357 Transcription termination factor nusG TREAZ_1289 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TREAZ_1291 PF00471 Ribosomal protein L33 TREAZ_1296 PF01584 CheW-like domain TREAZ_1297 PF07194 P2 response regulator binding domain TREAZ_1297 PF01627 Hpt domain TREAZ_1297 PF02895 Signal transducing histidine kinase, homodimeric domain TREAZ_1297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1297 PF01584 CheW-like domain TREAZ_1299 PF00773 RNB domain TREAZ_1303 PF01842 ACT domain TREAZ_1303 PF00696 Amino acid kinase family TREAZ_1304 PF01113 Dihydrodipicolinate reductase, N-terminus TREAZ_1304 PF05173 Dihydrodipicolinate reductase, C-terminus TREAZ_1306 PF00701 Dihydrodipicolinate synthetase family TREAZ_1307 PF02774 Semialdehyde dehydrogenase, dimerisation domain TREAZ_1307 PF01118 Semialdehyde dehydrogenase, NAD binding domain TREAZ_1308 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TREAZ_1308 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TREAZ_1309 PF00155 Aminotransferase class I and II TREAZ_1312 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain TREAZ_1312 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain TREAZ_1314 PF00570 HRDC domain TREAZ_1314 PF00270 DEAD/DEAH box helicase TREAZ_1314 PF16124 RecQ zinc-binding TREAZ_1314 PF00271 Helicase conserved C-terminal domain TREAZ_1314 PF09382 RQC domain TREAZ_1315 PF01926 50S ribosome-binding GTPase TREAZ_1315 PF06071 Protein of unknown function (DUF933) TREAZ_1317 PF01593 Flavin containing amine oxidoreductase TREAZ_1318 PF01053 Cys/Met metabolism PLP-dependent enzyme TREAZ_1319 PF01053 Cys/Met metabolism PLP-dependent enzyme TREAZ_1320 PF02082 Transcriptional regulator TREAZ_1321 PF02082 Transcriptional regulator TREAZ_1322 PF13458 Periplasmic binding protein TREAZ_1323 PF02653 Branched-chain amino acid transport system / permease component TREAZ_1325 PF12399 Branched-chain amino acid ATP-binding cassette transporter TREAZ_1325 PF00005 ABC transporter TREAZ_1326 PF00005 ABC transporter TREAZ_1327 PF14535 AMP-binding enzyme C-terminal domain TREAZ_1327 PF00501 AMP-binding enzyme TREAZ_1330 PF00005 ABC transporter TREAZ_1331 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1334 PF16124 RecQ zinc-binding TREAZ_1334 PF00570 HRDC domain TREAZ_1334 PF00271 Helicase conserved C-terminal domain TREAZ_1334 PF00270 DEAD/DEAH box helicase TREAZ_1334 PF09382 RQC domain TREAZ_1337 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1338 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1339 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREAZ_1340 PF00005 ABC transporter TREAZ_1342 PF07475 HPr Serine kinase C-terminal domain TREAZ_1342 PF02603 HPr Serine kinase N terminus TREAZ_1343 PF00381 PTS HPr component phosphorylation site TREAZ_1344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1344 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1344 PF00989 PAS fold TREAZ_1344 PF00672 HAMP domain TREAZ_1345 PF00158 Sigma-54 interaction domain TREAZ_1345 PF00072 Response regulator receiver domain TREAZ_1345 PF02954 Bacterial regulatory protein, Fis family TREAZ_1346 PF01726 LexA DNA binding domain TREAZ_1346 PF00717 Peptidase S24-like TREAZ_1348 PF02659 Putative manganese efflux pump TREAZ_1349 PF00999 Sodium/hydrogen exchanger family TREAZ_1350 PF10672 S-adenosylmethionine-dependent methyltransferase TREAZ_1350 PF17785 PUA-like domain TREAZ_1351 PF13090 Polyphosphate kinase C-terminal domain 2 TREAZ_1351 PF02503 Polyphosphate kinase middle domain TREAZ_1351 PF13089 Polyphosphate kinase N-terminal domain TREAZ_1351 PF17941 Polyphosphate kinase C-terminal domain 1 TREAZ_1352 PF02541 Ppx/GppA phosphatase family TREAZ_1354 PF01204 Trehalase TREAZ_1356 PF02934 GatB/GatE catalytic domain TREAZ_1356 PF02637 GatB domain TREAZ_1361 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREAZ_1361 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREAZ_1362 PF06134 L-rhamnose isomerase (RhaA) TREAZ_1364 PF02535 ZIP Zinc transporter TREAZ_1365 PF05191 Adenylate kinase, active site lid TREAZ_1366 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TREAZ_1366 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TREAZ_1367 PF01207 Dihydrouridine synthase (Dus) TREAZ_1368 PF00072 Response regulator receiver domain TREAZ_1371 PF01979 Amidohydrolase family TREAZ_1372 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TREAZ_1381 PF00465 Iron-containing alcohol dehydrogenase TREAZ_1382 PF10371 Domain of unknown function TREAZ_1382 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TREAZ_1382 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TREAZ_1382 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TREAZ_1382 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREAZ_1383 PF03819 MazG nucleotide pyrophosphohydrolase domain TREAZ_1386 PF00144 Beta-lactamase TREAZ_1387 PF01195 Peptidyl-tRNA hydrolase TREAZ_1388 PF00574 Clp protease TREAZ_1389 PF01268 Formate--tetrahydrofolate ligase TREAZ_1390 PF01168 Alanine racemase, N-terminal domain TREAZ_1390 PF00842 Alanine racemase, C-terminal domain TREAZ_1393 PF01569 PAP2 superfamily TREAZ_1394 PF12631 MnmE helical domain TREAZ_1394 PF01926 50S ribosome-binding GTPase TREAZ_1394 PF10396 GTP-binding protein TrmE N-terminus TREAZ_1395 PF01554 MatE TREAZ_1397 PF00072 Response regulator receiver domain TREAZ_1397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1397 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1397 PF01627 Hpt domain TREAZ_1398 PF01134 Glucose inhibited division protein A TREAZ_1398 PF13932 GidA associated domain TREAZ_1399 PF01230 HIT domain TREAZ_1403 PF08239 Bacterial SH3 domain TREAZ_1404 PF12848 ABC transporter TREAZ_1404 PF00005 ABC transporter TREAZ_1404 PF16326 ABC transporter C-terminal domain TREAZ_1406 PF16363 GDP-mannose 4,6 dehydratase TREAZ_1407 PF07687 Peptidase dimerisation domain TREAZ_1407 PF01546 Peptidase family M20/M25/M40 TREAZ_1409 PF00005 ABC transporter TREAZ_1409 PF08402 TOBE domain TREAZ_1410 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1411 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1412 PF13416 Bacterial extracellular solute-binding protein TREAZ_1414 PF00248 Aldo/keto reductase family TREAZ_1415 PF00107 Zinc-binding dehydrogenase TREAZ_1415 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_1416 PF01047 MarR family TREAZ_1416 PF00480 ROK family TREAZ_1419 PF00830 Ribosomal L28 family TREAZ_1420 PF03099 Biotin/lipoate A/B protein ligase family TREAZ_1420 PF12706 Beta-lactamase superfamily domain TREAZ_1422 PF00814 Glycoprotease family TREAZ_1424 PF04545 Sigma-70, region 4 TREAZ_1424 PF03979 Sigma-70 factor, region 1.1 TREAZ_1424 PF00140 Sigma-70 factor, region 1.2 TREAZ_1424 PF04542 Sigma-70 region 2 TREAZ_1424 PF04539 Sigma-70 region 3 TREAZ_1429 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1432 PF03104 DNA polymerase family B, exonuclease domain TREAZ_1432 PF00136 DNA polymerase family B TREAZ_1435 PF06969 HemN C-terminal domain TREAZ_1435 PF04055 Radical SAM superfamily TREAZ_1437 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREAZ_1437 PF03129 Anticodon binding domain TREAZ_1438 PF00571 CBS domain TREAZ_1438 PF00478 IMP dehydrogenase / GMP reductase domain TREAZ_1439 PF12683 Protein of unknown function (DUF3798) TREAZ_1446 PF01066 CDP-alcohol phosphatidyltransferase TREAZ_1448 PF02074 Carboxypeptidase Taq (M32) metallopeptidase TREAZ_1451 PF13635 Domain of unknown function (DUF4143) TREAZ_1451 PF13173 AAA domain TREAZ_1456 PF00075 RNase H TREAZ_1457 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_1457 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_1458 PF00118 TCP-1/cpn60 chaperonin family TREAZ_1460 PF00210 Ferritin-like domain TREAZ_1461 PF00691 OmpA family TREAZ_1462 PF00005 ABC transporter TREAZ_1466 PF07715 TonB-dependent Receptor Plug Domain TREAZ_1466 PF00593 TonB dependent receptor TREAZ_1471 PF02492 CobW/HypB/UreG, nucleotide-binding domain TREAZ_1472 PF12704 MacB-like periplasmic core domain TREAZ_1472 PF00005 ABC transporter TREAZ_1472 PF02687 FtsX-like permease family TREAZ_1474 PF12728 Helix-turn-helix domain TREAZ_1474 PF12727 PBP superfamily domain TREAZ_1478 PF02310 B12 binding domain TREAZ_1478 PF02607 B12 binding domain TREAZ_1480 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_1481 PF01208 Uroporphyrinogen decarboxylase (URO-D) TREAZ_1482 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1483 PF00005 ABC transporter TREAZ_1486 PF00291 Pyridoxal-phosphate dependent enzyme TREAZ_1487 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREAZ_1489 PF04055 Radical SAM superfamily TREAZ_1489 PF02579 Dinitrogenase iron-molybdenum cofactor TREAZ_1491 PF01638 HxlR-like helix-turn-helix TREAZ_1492 PF00872 Transposase, Mutator family TREAZ_1495 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_1495 PF08369 Proto-chlorophyllide reductase 57 kD subunit TREAZ_1496 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_1497 PF01053 Cys/Met metabolism PLP-dependent enzyme TREAZ_1500 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1501 PF00005 ABC transporter TREAZ_1503 PF02595 Glycerate kinase family TREAZ_1505 PF03009 Glycerophosphoryl diester phosphodiesterase family TREAZ_1507 PF03023 Lipid II flippase MurJ TREAZ_1519 PF02867 Ribonucleotide reductase, barrel domain TREAZ_1519 PF08471 Class II vitamin B12-dependent ribonucleotide reductase TREAZ_1523 PF02110 Hydroxyethylthiazole kinase family TREAZ_1524 PF02525 Flavodoxin-like fold TREAZ_1526 PF07726 ATPase family associated with various cellular activities (AAA) TREAZ_1526 PF17863 AAA lid domain TREAZ_1533 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TREAZ_1533 PF04324 BFD-like [2Fe-2S] binding domain TREAZ_1533 PF18267 Rubredoxin NAD+ reductase C-terminal domain TREAZ_1533 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREAZ_1533 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TREAZ_1535 PF03063 Prismane/CO dehydrogenase family TREAZ_1536 PF02082 Transcriptional regulator TREAZ_1539 PF13545 Crp-like helix-turn-helix domain TREAZ_1539 PF00027 Cyclic nucleotide-binding domain TREAZ_1545 PF02811 PHP domain TREAZ_1547 PF01078 Magnesium chelatase, subunit ChlI TREAZ_1547 PF13335 Magnesium chelatase, subunit ChlI C-terminal TREAZ_1549 PF00675 Insulinase (Peptidase family M16) TREAZ_1549 PF08367 Peptidase M16C associated TREAZ_1549 PF05193 Peptidase M16 inactive domain TREAZ_1550 PF01706 FliG C-terminal domain TREAZ_1550 PF14842 FliG N-terminal domain TREAZ_1550 PF14841 FliG middle domain TREAZ_1551 PF17874 MalT-like TPR region TREAZ_1551 PF00196 Bacterial regulatory proteins, luxR family TREAZ_1552 PF01497 Periplasmic binding protein TREAZ_1552 PF12833 Helix-turn-helix domain TREAZ_1553 PF12833 Helix-turn-helix domain TREAZ_1553 PF01497 Periplasmic binding protein TREAZ_1554 PF00270 DEAD/DEAH box helicase TREAZ_1554 PF00271 Helicase conserved C-terminal domain TREAZ_1555 PF02607 B12 binding domain TREAZ_1555 PF02310 B12 binding domain TREAZ_1556 PF00005 ABC transporter TREAZ_1556 PF03459 TOBE domain TREAZ_1556 PF17912 MalK OB fold domain TREAZ_1557 PF06470 SMC proteins Flexible Hinge Domain TREAZ_1557 PF02463 RecF/RecN/SMC N terminal domain TREAZ_1562 PF13361 UvrD-like helicase C-terminal domain TREAZ_1562 PF00580 UvrD/REP helicase N-terminal domain TREAZ_1563 PF01769 Divalent cation transporter TREAZ_1563 PF03448 MgtE intracellular N domain TREAZ_1563 PF00571 CBS domain TREAZ_1564 PF00958 GMP synthase C terminal domain TREAZ_1564 PF00117 Glutamine amidotransferase class-I TREAZ_1564 PF02540 NAD synthase TREAZ_1565 PF00709 Adenylosuccinate synthetase TREAZ_1567 PF00571 CBS domain TREAZ_1567 PF00478 IMP dehydrogenase / GMP reductase domain TREAZ_1568 PF14698 Argininosuccinate lyase C-terminal TREAZ_1568 PF00206 Lyase TREAZ_1572 PF06250 YhcG PDDEXK nuclease domain TREAZ_1572 PF17761 DUF1016 N-terminal domain TREAZ_1577 PF01547 Bacterial extracellular solute-binding protein TREAZ_1578 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1580 PF00356 Bacterial regulatory proteins, lacI family TREAZ_1583 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TREAZ_1584 PF02683 Cytochrome C biogenesis protein transmembrane region TREAZ_1585 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREAZ_1585 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TREAZ_1586 PF00578 AhpC/TSA family TREAZ_1587 PF04898 Glutamate synthase central domain TREAZ_1587 PF00310 Glutamine amidotransferases class-II TREAZ_1587 PF01493 GXGXG motif TREAZ_1587 PF01645 Conserved region in glutamate synthase TREAZ_1588 PF00877 NlpC/P60 family TREAZ_1590 PF07475 HPr Serine kinase C-terminal domain TREAZ_1590 PF02603 HPr Serine kinase N terminus TREAZ_1593 PF13614 AAA domain TREAZ_1594 PF02195 ParB-like nuclease domain TREAZ_1594 PF17762 HTH domain found in ParB protein TREAZ_1599 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1600 PF00005 ABC transporter TREAZ_1601 PF00291 Pyridoxal-phosphate dependent enzyme TREAZ_1603 PF01053 Cys/Met metabolism PLP-dependent enzyme TREAZ_1604 PF00132 Bacterial transferase hexapeptide (six repeats) TREAZ_1607 PF00266 Aminotransferase class-V TREAZ_1610 PF00581 Rhodanese-like domain TREAZ_1610 PF00899 ThiF family TREAZ_1614 PF00291 Pyridoxal-phosphate dependent enzyme TREAZ_1616 PF03788 LrgA family TREAZ_1620 PF00343 Carbohydrate phosphorylase TREAZ_1620 PF11897 Protein of unknown function (DUF3417) TREAZ_1628 PF01380 SIS domain TREAZ_1629 PF01212 Beta-eliminating lyase TREAZ_1630 PF01321 Creatinase/Prolidase N-terminal domain TREAZ_1630 PF00557 Metallopeptidase family M24 TREAZ_1631 PF02615 Malate/L-lactate dehydrogenase TREAZ_1633 PF00072 Response regulator receiver domain TREAZ_1634 PF09308 LuxQ, periplasmic TREAZ_1634 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1634 PF00072 Response regulator receiver domain TREAZ_1636 PF08668 HDOD domain TREAZ_1644 PF00809 Pterin binding enzyme TREAZ_1645 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit TREAZ_1645 PF04060 Putative Fe-S cluster TREAZ_1647 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit TREAZ_1648 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain TREAZ_1648 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit TREAZ_1649 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TREAZ_1650 PF03063 Prismane/CO dehydrogenase family TREAZ_1656 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1657 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1658 PF00356 Bacterial regulatory proteins, lacI family TREAZ_1660 PF01261 Xylose isomerase-like TIM barrel TREAZ_1661 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1661 PF05384 Sensor protein DegS TREAZ_1661 PF07730 Histidine kinase TREAZ_1662 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_1662 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_1665 PF00196 Bacterial regulatory proteins, luxR family TREAZ_1665 PF00072 Response regulator receiver domain TREAZ_1673 PF00970 Oxidoreductase FAD-binding domain TREAZ_1673 PF00111 2Fe-2S iron-sulfur cluster binding domain TREAZ_1673 PF00175 Oxidoreductase NAD-binding domain TREAZ_1676 PF02310 B12 binding domain TREAZ_1676 PF02607 B12 binding domain TREAZ_1678 PF01541 GIY-YIG catalytic domain TREAZ_1678 PF08459 UvrC Helix-hairpin-helix N-terminal TREAZ_1678 PF02151 UvrB/uvrC motif TREAZ_1681 PF00255 Glutathione peroxidase TREAZ_1683 PF00309 Sigma-54 factor, Activator interacting domain (AID) TREAZ_1683 PF04963 Sigma-54 factor, core binding domain TREAZ_1683 PF04552 Sigma-54, DNA binding domain TREAZ_1687 PF07516 SecA Wing and Scaffold domain TREAZ_1687 PF02810 SEC-C motif TREAZ_1687 PF07517 SecA DEAD-like domain TREAZ_1687 PF01043 SecA preprotein cross-linking domain TREAZ_1692 PF00403 Heavy-metal-associated domain TREAZ_1694 PF01022 Bacterial regulatory protein, arsR family TREAZ_1696 PF01554 MatE TREAZ_1700 PF01926 50S ribosome-binding GTPase TREAZ_1700 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TREAZ_1701 PF02896 PEP-utilising enzyme, TIM barrel domain TREAZ_1701 PF05524 PEP-utilising enzyme, N-terminal TREAZ_1701 PF00391 PEP-utilising enzyme, mobile domain TREAZ_1704 PF06832 Penicillin-Binding Protein C-terminus Family TREAZ_1704 PF00905 Penicillin binding protein transpeptidase domain TREAZ_1704 PF00912 Transglycosylase TREAZ_1705 PF05552 Conserved TM helix TREAZ_1705 PF00924 Mechanosensitive ion channel TREAZ_1706 PF00207 Alpha-2-macroglobulin family TREAZ_1706 PF07703 Alpha-2-macroglobulin bait region domain TREAZ_1706 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TREAZ_1706 PF11974 Bacterial alpha-2-macroglobulin MG3 domain TREAZ_1706 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain TREAZ_1706 PF17962 Bacterial macroglobulin domain 6 TREAZ_1706 PF01835 MG2 domain TREAZ_1707 PF00872 Transposase, Mutator family TREAZ_1712 PF00144 Beta-lactamase TREAZ_1718 PF00183 Hsp90 protein TREAZ_1719 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_1719 PF08369 Proto-chlorophyllide reductase 57 kD subunit TREAZ_1720 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_1721 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREAZ_1722 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1723 PF00005 ABC transporter TREAZ_1724 PF09084 NMT1/THI5 like TREAZ_1726 PF02773 S-adenosylmethionine synthetase, C-terminal domain TREAZ_1726 PF02772 S-adenosylmethionine synthetase, central domain TREAZ_1726 PF00438 S-adenosylmethionine synthetase, N-terminal domain TREAZ_1727 PF01554 MatE TREAZ_1730 PF00899 ThiF family TREAZ_1731 PF00009 Elongation factor Tu GTP binding domain TREAZ_1732 PF01507 Phosphoadenosine phosphosulfate reductase family TREAZ_1733 PF01507 Phosphoadenosine phosphosulfate reductase family TREAZ_1734 PF12857 TOBE-like domain TREAZ_1734 PF00005 ABC transporter TREAZ_1734 PF17850 CysA C-terminal regulatory domain TREAZ_1735 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1736 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TREAZ_1740 PF14824 Sirohaem biosynthesis protein central TREAZ_1740 PF10414 Sirohaem synthase dimerisation region TREAZ_1742 PF01979 Amidohydrolase family TREAZ_1742 PF13382 Adenine deaminase C-terminal domain TREAZ_1744 PF06745 KaiC TREAZ_1744 PF18073 Rubredoxin metal binding domain TREAZ_1746 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) TREAZ_1750 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TREAZ_1752 PF00011 Hsp20/alpha crystallin family TREAZ_1762 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREAZ_1767 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREAZ_1768 PF02779 Transketolase, pyrimidine binding domain TREAZ_1768 PF00456 Transketolase, thiamine diphosphate binding domain TREAZ_1774 PF01081 KDPG and KHG aldolase TREAZ_1782 PF02511 Thymidylate synthase complementing protein TREAZ_1784 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREAZ_1784 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREAZ_1785 PF00596 Class II Aldolase and Adducin N-terminal domain TREAZ_1792 PF12169 DNA polymerase III subunits gamma and tau domain III TREAZ_1793 PF02575 YbaB/EbfC DNA-binding family TREAZ_1794 PF13662 Toprim domain TREAZ_1794 PF02132 RecR protein TREAZ_1795 PF00465 Iron-containing alcohol dehydrogenase TREAZ_1796 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TREAZ_1800 PF00873 AcrB/AcrD/AcrF family TREAZ_1801 PF00529 HlyD membrane-fusion protein of T1SS TREAZ_1801 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TREAZ_1803 PF02909 Tetracyclin repressor-like, C-terminal domain TREAZ_1803 PF00440 Bacterial regulatory proteins, tetR family TREAZ_1806 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_1806 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_1807 PF01515 Phosphate acetyl/butaryl transferase TREAZ_1809 PF04539 Sigma-70 region 3 TREAZ_1809 PF00140 Sigma-70 factor, region 1.2 TREAZ_1809 PF03979 Sigma-70 factor, region 1.1 TREAZ_1809 PF04542 Sigma-70 region 2 TREAZ_1809 PF04545 Sigma-70, region 4 TREAZ_1811 PF02446 4-alpha-glucanotransferase TREAZ_1817 PF00501 AMP-binding enzyme TREAZ_1817 PF13193 AMP-binding enzyme C-terminal domain TREAZ_1820 PF18125 RlmM ferredoxin-like domain TREAZ_1820 PF01728 FtsJ-like methyltransferase TREAZ_1821 PF04023 FeoA domain TREAZ_1821 PF17910 FeoB cytosolic helical domain TREAZ_1821 PF02421 Ferrous iron transport protein B TREAZ_1821 PF07670 Nucleoside recognition TREAZ_1821 PF07664 Ferrous iron transport protein B C terminus TREAZ_1825 PF01921 tRNA synthetases class I (K) TREAZ_1826 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1826 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_1826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1826 PF00672 HAMP domain TREAZ_1826 PF00072 Response regulator receiver domain TREAZ_1826 PF01627 Hpt domain TREAZ_1830 PF00465 Iron-containing alcohol dehydrogenase TREAZ_1832 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TREAZ_1834 PF02203 Tar ligand binding domain homologue TREAZ_1834 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_1834 PF00672 HAMP domain TREAZ_1835 PF00171 Aldehyde dehydrogenase family TREAZ_1838 PF00356 Bacterial regulatory proteins, lacI family TREAZ_1839 PF16353 Domain of unknown function(DUF4981) TREAZ_1839 PF00703 Glycosyl hydrolases family 2 TREAZ_1839 PF02929 Beta galactosidase small chain TREAZ_1839 PF02837 Glycosyl hydrolases family 2, sugar binding domain TREAZ_1839 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TREAZ_1841 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1842 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_1843 PF02449 Beta-galactosidase TREAZ_1843 PF08532 Beta-galactosidase trimerisation domain TREAZ_1843 PF08533 Beta-galactosidase C-terminal domain TREAZ_1845 PF00588 SpoU rRNA Methylase family TREAZ_1848 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TREAZ_1851 PF01627 Hpt domain TREAZ_1851 PF00989 PAS fold TREAZ_1851 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1851 PF00072 Response regulator receiver domain TREAZ_1851 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREAZ_1851 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1852 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1852 PF00072 Response regulator receiver domain TREAZ_1852 PF01627 Hpt domain TREAZ_1854 PF01554 MatE TREAZ_1855 PF00440 Bacterial regulatory proteins, tetR family TREAZ_1855 PF13305 Tetracyclin repressor-like, C-terminal domain TREAZ_1862 PF01554 MatE TREAZ_1865 PF13407 Periplasmic binding protein domain TREAZ_1867 PF02653 Branched-chain amino acid transport system / permease component TREAZ_1868 PF00005 ABC transporter TREAZ_1869 PF13407 Periplasmic binding protein domain TREAZ_1870 PF08769 Sporulation initiation factor Spo0A C terminal TREAZ_1870 PF00072 Response regulator receiver domain TREAZ_1871 PF00672 HAMP domain TREAZ_1871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1871 PF02743 Cache domain TREAZ_1871 PF06580 Histidine kinase TREAZ_1873 PF00005 ABC transporter TREAZ_1875 PF00117 Glutamine amidotransferase class-I TREAZ_1875 PF06418 CTP synthase N-terminus TREAZ_1878 PF04468 PSP1 C-terminal conserved region TREAZ_1882 PF01551 Peptidase family M23 TREAZ_1882 PF04225 Opacity-associated protein A LysM-like domain TREAZ_1886 PF02405 Permease MlaE TREAZ_1887 PF00005 ABC transporter TREAZ_1890 PF01411 tRNA synthetases class II (A) TREAZ_1890 PF02272 DHHA1 domain TREAZ_1890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREAZ_1891 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_1891 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_1892 PF08032 RNA 2'-O ribose methyltransferase substrate binding TREAZ_1892 PF00588 SpoU rRNA Methylase family TREAZ_1898 PF00365 Phosphofructokinase TREAZ_1899 PF01170 Putative RNA methylase family UPF0020 TREAZ_1899 PF02926 THUMP domain TREAZ_1902 PF07478 D-ala D-ala ligase C-terminus TREAZ_1902 PF01820 D-ala D-ala ligase N-terminus TREAZ_1903 PF00501 AMP-binding enzyme TREAZ_1911 PF00196 Bacterial regulatory proteins, luxR family TREAZ_1911 PF00072 Response regulator receiver domain TREAZ_1925 PF00665 Integrase core domain TREAZ_1927 PF00486 Transcriptional regulatory protein, C terminal TREAZ_1927 PF00072 Response regulator receiver domain TREAZ_1928 PF00672 HAMP domain TREAZ_1928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_1928 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_1928 PF13426 PAS domain TREAZ_1959 PF00211 Adenylate and Guanylate cyclase catalytic domain TREAZ_1964 PF00005 ABC transporter TREAZ_1966 PF01380 SIS domain TREAZ_1969 PF03129 Anticodon binding domain TREAZ_1969 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREAZ_1969 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREAZ_1971 PF00455 DeoR C terminal sensor domain TREAZ_1971 PF08220 DeoR-like helix-turn-helix domain TREAZ_1973 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_1973 PF17758 Proteasomal ATPase OB N-terminal domain TREAZ_1973 PF16450 Proteasomal ATPase OB C-terminal domain TREAZ_1984 PF01252 Signal peptidase (SPase) II TREAZ_1985 PF01784 NIF3 (NGG1p interacting factor 3) TREAZ_1994 PF00005 ABC transporter TREAZ_1994 PF13732 Domain of unknown function (DUF4162) TREAZ_1998 PF08125 Mannitol dehydrogenase C-terminal domain TREAZ_1998 PF01232 Mannitol dehydrogenase Rossmann domain TREAZ_1999 PF02629 CoA binding domain TREAZ_1999 PF06971 Putative DNA-binding protein N-terminus TREAZ_2002 PF02906 Iron only hydrogenase large subunit, C-terminal domain TREAZ_2002 PF02256 Iron hydrogenase small subunit TREAZ_2002 PF12838 4Fe-4S dicluster domain TREAZ_2006 PF00465 Iron-containing alcohol dehydrogenase TREAZ_2006 PF00171 Aldehyde dehydrogenase family TREAZ_2007 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREAZ_2009 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2013 PF00005 ABC transporter TREAZ_2014 PF02653 Branched-chain amino acid transport system / permease component TREAZ_2015 PF13407 Periplasmic binding protein domain TREAZ_2018 PF08543 Phosphomethylpyrimidine kinase TREAZ_2020 PF04439 Streptomycin adenylyltransferase TREAZ_2021 PF00588 SpoU rRNA Methylase family TREAZ_2021 PF08032 RNA 2'-O ribose methyltransferase substrate binding TREAZ_2022 PF10996 Beta-Casp domain TREAZ_2022 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TREAZ_2022 PF00753 Metallo-beta-lactamase superfamily TREAZ_2023 PF07702 UTRA domain TREAZ_2023 PF00392 Bacterial regulatory proteins, gntR family TREAZ_2025 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2026 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2029 PF00899 ThiF family TREAZ_2030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_2030 PF00672 HAMP domain TREAZ_2033 PF00672 HAMP domain TREAZ_2033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2033 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2033 PF01627 Hpt domain TREAZ_2033 PF00072 Response regulator receiver domain TREAZ_2033 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2035 PF05690 Thiazole biosynthesis protein ThiG TREAZ_2036 PF04055 Radical SAM superfamily TREAZ_2036 PF06968 Biotin and Thiamin Synthesis associated domain TREAZ_2037 PF02581 Thiamine monophosphate synthase TREAZ_2040 PF00464 Serine hydroxymethyltransferase TREAZ_2042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2042 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2042 PF00672 HAMP domain TREAZ_2042 PF01627 Hpt domain TREAZ_2042 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2042 PF00072 Response regulator receiver domain TREAZ_2046 PF03006 Haemolysin-III related TREAZ_2048 PF02666 Phosphatidylserine decarboxylase TREAZ_2049 PF01066 CDP-alcohol phosphatidyltransferase TREAZ_2051 PF01739 CheR methyltransferase, SAM binding domain TREAZ_2051 PF03705 CheR methyltransferase, all-alpha domain TREAZ_2052 PF00072 Response regulator receiver domain TREAZ_2052 PF01339 CheB methylesterase TREAZ_2054 PF00291 Pyridoxal-phosphate dependent enzyme TREAZ_2055 PF10518 TAT (twin-arginine translocation) pathway signal sequence TREAZ_2055 PF00149 Calcineurin-like phosphoesterase TREAZ_2057 PF00753 Metallo-beta-lactamase superfamily TREAZ_2060 PF01336 OB-fold nucleic acid binding domain TREAZ_2060 PF00152 tRNA synthetases class II (D, K and N) TREAZ_2060 PF02938 GAD domain TREAZ_2061 PF02417 Chromate transporter TREAZ_2062 PF02417 Chromate transporter TREAZ_2064 PF00694 Aconitase C-terminal domain TREAZ_2065 PF00330 Aconitase family (aconitate hydratase) TREAZ_2066 PF01381 Helix-turn-helix TREAZ_2070 PF02502 Ribose/Galactose Isomerase TREAZ_2071 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2076 PF00356 Bacterial regulatory proteins, lacI family TREAZ_2079 PF07726 ATPase family associated with various cellular activities (AAA) TREAZ_2079 PF17863 AAA lid domain TREAZ_2081 PF01047 MarR family TREAZ_2081 PF00480 ROK family TREAZ_2083 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2084 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2088 PF07726 ATPase family associated with various cellular activities (AAA) TREAZ_2088 PF17863 AAA lid domain TREAZ_2090 PF13673 Acetyltransferase (GNAT) domain TREAZ_2090 PF13302 Acetyltransferase (GNAT) domain TREAZ_2090 PF03352 Methyladenine glycosylase TREAZ_2090 PF00117 Glutamine amidotransferase class-I TREAZ_2090 PF00958 GMP synthase C terminal domain TREAZ_2092 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TREAZ_2092 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TREAZ_2098 PF00403 Heavy-metal-associated domain TREAZ_2103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2103 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2103 PF00989 PAS fold TREAZ_2103 PF16736 Single Cache-like TREAZ_2104 PF00486 Transcriptional regulatory protein, C terminal TREAZ_2104 PF00072 Response regulator receiver domain TREAZ_2106 PF01381 Helix-turn-helix TREAZ_2109 PF13416 Bacterial extracellular solute-binding protein TREAZ_2112 PF00005 ABC transporter TREAZ_2112 PF03459 TOBE domain TREAZ_2112 PF17912 MalK OB fold domain TREAZ_2113 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2114 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2116 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TREAZ_2116 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TREAZ_2117 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain TREAZ_2117 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain TREAZ_2118 PF01979 Amidohydrolase family TREAZ_2120 PF00248 Aldo/keto reductase family TREAZ_2121 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TREAZ_2123 PF02554 Carbon starvation protein CstA TREAZ_2124 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TREAZ_2125 PF01180 Dihydroorotate dehydrogenase TREAZ_2126 PF00156 Phosphoribosyl transferase domain TREAZ_2127 PF05448 Acetyl xylan esterase (AXE1) TREAZ_2128 PF00232 Glycosyl hydrolase family 1 TREAZ_2130 PF00849 RNA pseudouridylate synthase TREAZ_2133 PF05193 Peptidase M16 inactive domain TREAZ_2133 PF00675 Insulinase (Peptidase family M16) TREAZ_2134 PF01554 MatE TREAZ_2135 PF00860 Permease family TREAZ_2137 PF09308 LuxQ, periplasmic TREAZ_2137 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2137 PF00072 Response regulator receiver domain TREAZ_2139 PF01424 R3H domain TREAZ_2139 PF14804 Jag N-terminus TREAZ_2140 PF14849 YidC periplasmic domain TREAZ_2140 PF02096 60Kd inner membrane protein TREAZ_2141 PF01809 Putative membrane protein insertion efficiency factor TREAZ_2142 PF00825 Ribonuclease P TREAZ_2143 PF00468 Ribosomal protein L34 TREAZ_2146 PF02661 Fic/DOC family TREAZ_2146 PF12728 Helix-turn-helix domain TREAZ_2148 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TREAZ_2148 PF00128 Alpha amylase, catalytic domain TREAZ_2149 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) TREAZ_2151 PF00072 Response regulator receiver domain TREAZ_2151 PF01627 Hpt domain TREAZ_2151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2151 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2155 PF13173 AAA domain TREAZ_2155 PF13635 Domain of unknown function (DUF4143) TREAZ_2170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2170 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2170 PF01627 Hpt domain TREAZ_2170 PF00072 Response regulator receiver domain TREAZ_2170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2170 PF00672 HAMP domain TREAZ_2171 PF00669 Bacterial flagellin N-terminal helical region TREAZ_2171 PF00700 Bacterial flagellin C-terminal helical region TREAZ_2174 PF00211 Adenylate and Guanylate cyclase catalytic domain TREAZ_2177 PF00672 HAMP domain TREAZ_2177 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_2178 PF00230 Major intrinsic protein TREAZ_2180 PF02772 S-adenosylmethionine synthetase, central domain TREAZ_2180 PF00438 S-adenosylmethionine synthetase, N-terminal domain TREAZ_2180 PF02773 S-adenosylmethionine synthetase, C-terminal domain TREAZ_2181 PF04972 BON domain TREAZ_2181 PF01476 LysM domain TREAZ_2183 PF07556 Protein of unknown function (DUF1538) TREAZ_2190 PF02978 Signal peptide binding domain TREAZ_2190 PF02881 SRP54-type protein, helical bundle domain TREAZ_2190 PF00448 SRP54-type protein, GTPase domain TREAZ_2191 PF03707 Bacterial signalling protein N terminal repeat TREAZ_2191 PF00990 Diguanylate cyclase, GGDEF domain TREAZ_2191 PF00563 EAL domain TREAZ_2193 PF03707 Bacterial signalling protein N terminal repeat TREAZ_2193 PF00563 EAL domain TREAZ_2193 PF00990 Diguanylate cyclase, GGDEF domain TREAZ_2194 PF00334 Nucleoside diphosphate kinase TREAZ_2195 PF00989 PAS fold TREAZ_2195 PF01627 Hpt domain TREAZ_2195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2195 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2195 PF00072 Response regulator receiver domain TREAZ_2195 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREAZ_2198 PF01594 AI-2E family transporter TREAZ_2200 PF00990 Diguanylate cyclase, GGDEF domain TREAZ_2200 PF17151 Periplasmic sensor domain TREAZ_2208 PF00248 Aldo/keto reductase family TREAZ_2210 PF03630 Fumble TREAZ_2211 PF01556 DnaJ C terminal domain TREAZ_2211 PF00226 DnaJ domain TREAZ_2211 PF00684 DnaJ central domain TREAZ_2212 PF00012 Hsp70 protein TREAZ_2213 PF01025 GrpE TREAZ_2215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREAZ_2215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREAZ_2216 PF00266 Aminotransferase class-V TREAZ_2218 PF02673 Bacitracin resistance protein BacA TREAZ_2222 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREAZ_2222 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREAZ_2223 PF00196 Bacterial regulatory proteins, luxR family TREAZ_2223 PF00072 Response regulator receiver domain TREAZ_2224 PF01026 TatD related DNase TREAZ_2225 PF01207 Dihydrouridine synthase (Dus) TREAZ_2226 PF01261 Xylose isomerase-like TIM barrel TREAZ_2229 PF07729 FCD domain TREAZ_2229 PF00392 Bacterial regulatory proteins, gntR family TREAZ_2232 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREAZ_2233 PF01208 Uroporphyrinogen decarboxylase (URO-D) TREAZ_2234 PF02743 Cache domain TREAZ_2234 PF00672 HAMP domain TREAZ_2234 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_2237 PF01409 tRNA synthetases class II core domain (F) TREAZ_2238 PF00672 HAMP domain TREAZ_2238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2238 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2238 PF01627 Hpt domain TREAZ_2238 PF00072 Response regulator receiver domain TREAZ_2238 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2240 PF01121 Dephospho-CoA kinase TREAZ_2241 PF16916 Dimerisation domain of Zinc Transporter TREAZ_2241 PF01545 Cation efflux family TREAZ_2243 PF00436 Single-strand binding protein family TREAZ_2245 PF01914 MarC family integral membrane protein TREAZ_2248 PF00085 Thioredoxin TREAZ_2255 PF00593 TonB dependent receptor TREAZ_2255 PF07715 TonB-dependent Receptor Plug Domain TREAZ_2257 PF01032 FecCD transport family TREAZ_2258 PF00005 ABC transporter TREAZ_2259 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREAZ_2260 PF08369 Proto-chlorophyllide reductase 57 kD subunit TREAZ_2260 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_2261 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TREAZ_2263 PF02277 Phosphoribosyltransferase TREAZ_2264 PF02654 Cobalamin-5-phosphate synthase TREAZ_2266 PF00749 tRNA synthetases class I (E and Q), catalytic domain TREAZ_2266 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain TREAZ_2274 PF01106 NifU-like domain TREAZ_2275 PF11842 Domain of unknown function (DUF3362) TREAZ_2275 PF04055 Radical SAM superfamily TREAZ_2275 PF08497 Radical SAM N-terminal TREAZ_2276 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREAZ_2280 PF02447 GntP family permease TREAZ_2283 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_2284 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TREAZ_2284 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREAZ_2287 PF16875 Glycosyl hydrolase family 36 N-terminal domain TREAZ_2287 PF16874 Glycosyl hydrolase family 36 C-terminal domain TREAZ_2288 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TREAZ_2288 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREAZ_2289 PF00872 Transposase, Mutator family TREAZ_2290 PF06480 FtsH Extracellular TREAZ_2290 PF17862 AAA+ lid domain TREAZ_2290 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_2290 PF01434 Peptidase family M41 TREAZ_2297 PF12849 PBP superfamily domain TREAZ_2298 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2299 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2300 PF00005 ABC transporter TREAZ_2301 PF01895 PhoU domain TREAZ_2302 PF00072 Response regulator receiver domain TREAZ_2302 PF00486 Transcriptional regulatory protein, C terminal TREAZ_2303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2303 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2303 PF00989 PAS fold TREAZ_2303 PF11808 Phosphate regulon sensor protein PhoR TREAZ_2304 PF00923 Transaldolase/Fructose-6-phosphate aldolase TREAZ_2306 PF00171 Aldehyde dehydrogenase family TREAZ_2307 PF02653 Branched-chain amino acid transport system / permease component TREAZ_2308 PF00005 ABC transporter TREAZ_2309 PF13407 Periplasmic binding protein domain TREAZ_2310 PF00072 Response regulator receiver domain TREAZ_2314 PF13419 Haloacid dehalogenase-like hydrolase TREAZ_2316 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2317 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2320 PF02653 Branched-chain amino acid transport system / permease component TREAZ_2321 PF00005 ABC transporter TREAZ_2323 PF01208 Uroporphyrinogen decarboxylase (URO-D) TREAZ_2324 PF06580 Histidine kinase TREAZ_2324 PF13492 GAF domain TREAZ_2324 PF07694 5TMR of 5TMR-LYT TREAZ_2324 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2326 PF00196 Bacterial regulatory proteins, luxR family TREAZ_2326 PF00072 Response regulator receiver domain TREAZ_2327 PF01112 Asparaginase TREAZ_2329 PF01202 Shikimate kinase TREAZ_2336 PF05258 Dna[CI] antecedent, DciA TREAZ_2337 PF02463 RecF/RecN/SMC N terminal domain TREAZ_2338 PF02768 DNA polymerase III beta subunit, C-terminal domain TREAZ_2338 PF02767 DNA polymerase III beta subunit, central domain TREAZ_2338 PF00712 DNA polymerase III beta subunit, N-terminal domain TREAZ_2339 PF00308 Bacterial dnaA protein TREAZ_2339 PF11638 DnaA N-terminal domain TREAZ_2339 PF08299 Bacterial dnaA protein helix-turn-helix TREAZ_2341 PF00986 DNA gyrase B subunit, carboxyl terminus TREAZ_2341 PF00204 DNA gyrase B TREAZ_2341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2341 PF01751 Toprim domain TREAZ_2342 PF13635 Domain of unknown function (DUF4143) TREAZ_2342 PF13173 AAA domain TREAZ_2344 PF03781 Sulfatase-modifying factor enzyme 1 TREAZ_2346 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2348 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2349 PF13416 Bacterial extracellular solute-binding protein TREAZ_2350 PF04298 Putative neutral zinc metallopeptidase TREAZ_2351 PF00521 DNA gyrase/topoisomerase IV, subunit A TREAZ_2351 PF03989 DNA gyrase C-terminal domain, beta-propeller TREAZ_2353 PF04073 Aminoacyl-tRNA editing domain TREAZ_2362 PF00072 Response regulator receiver domain TREAZ_2362 PF01627 Hpt domain TREAZ_2362 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2362 PF00672 HAMP domain TREAZ_2362 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2374 PF07690 Major Facilitator Superfamily TREAZ_2375 PF13419 Haloacid dehalogenase-like hydrolase TREAZ_2377 PF12706 Beta-lactamase superfamily domain TREAZ_2379 PF00933 Glycosyl hydrolase family 3 N terminal domain TREAZ_2379 PF01915 Glycosyl hydrolase family 3 C-terminal domain TREAZ_2380 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREAZ_2382 PF01758 Sodium Bile acid symporter family TREAZ_2384 PF02614 Glucuronate isomerase TREAZ_2389 PF00005 ABC transporter TREAZ_2390 PF12683 Protein of unknown function (DUF3798) TREAZ_2391 PF00579 tRNA synthetases class I (W and Y) TREAZ_2392 PF02690 Na+/Pi-cotransporter TREAZ_2394 PF01546 Peptidase family M20/M25/M40 TREAZ_2394 PF07687 Peptidase dimerisation domain TREAZ_2396 PF02086 D12 class N6 adenine-specific DNA methyltransferase TREAZ_2397 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_2397 PF00107 Zinc-binding dehydrogenase TREAZ_2398 PF02163 Peptidase family M50 TREAZ_2399 PF10282 Lactonase, 7-bladed beta-propeller TREAZ_2400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TREAZ_2400 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TREAZ_2406 PF02384 N-6 DNA Methylase TREAZ_2408 PF00872 Transposase, Mutator family TREAZ_2409 PF00872 Transposase, Mutator family TREAZ_2410 PF00872 Transposase, Mutator family TREAZ_2411 PF00872 Transposase, Mutator family TREAZ_2415 PF01435 Peptidase family M48 TREAZ_2415 PF13181 Tetratricopeptide repeat TREAZ_2422 PF02080 TrkA-C domain TREAZ_2422 PF02254 TrkA-N domain TREAZ_2423 PF02386 Cation transport protein TREAZ_2424 PF01627 Hpt domain TREAZ_2424 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2424 PF00072 Response regulator receiver domain TREAZ_2424 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2424 PF00672 HAMP domain TREAZ_2426 PF18766 SWI2/SNF2 ATPase TREAZ_2426 PF11867 Domain of unknown function (DUF3387) TREAZ_2426 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TREAZ_2433 PF01420 Type I restriction modification DNA specificity domain TREAZ_2435 PF02384 N-6 DNA Methylase TREAZ_2436 PF00072 Response regulator receiver domain TREAZ_2437 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2437 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2437 PF00672 HAMP domain TREAZ_2437 PF01627 Hpt domain TREAZ_2437 PF00072 Response regulator receiver domain TREAZ_2442 PF02895 Signal transducing histidine kinase, homodimeric domain TREAZ_2442 PF01584 CheW-like domain TREAZ_2442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2442 PF07194 P2 response regulator binding domain TREAZ_2442 PF01627 Hpt domain TREAZ_2445 PF00072 Response regulator receiver domain TREAZ_2453 PF12072 Domain of unknown function (DUF3552) TREAZ_2453 PF00013 KH domain TREAZ_2453 PF01966 HD domain TREAZ_2454 PF13277 YmdB-like protein TREAZ_2456 PF00872 Transposase, Mutator family TREAZ_2458 PF12729 Four helix bundle sensory module for signal transduction TREAZ_2458 PF00672 HAMP domain TREAZ_2458 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_2459 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TREAZ_2459 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TREAZ_2460 PF02446 4-alpha-glucanotransferase TREAZ_2465 PF00886 Ribosomal protein S16 TREAZ_2467 PF01782 RimM N-terminal domain TREAZ_2468 PF01746 tRNA (Guanine-1)-methyltransferase TREAZ_2469 PF01245 Ribosomal protein L19 TREAZ_2472 PF11871 Domain of unknown function (DUF3391) TREAZ_2472 PF01966 HD domain TREAZ_2473 PF02021 Uncharacterised protein family UPF0102 TREAZ_2475 PF00990 Diguanylate cyclase, GGDEF domain TREAZ_2476 PF01048 Phosphorylase superfamily TREAZ_2477 PF02664 S-Ribosylhomocysteinase (LuxS) TREAZ_2492 PF00216 Bacterial DNA-binding protein TREAZ_2504 PF12728 Helix-turn-helix domain TREAZ_2505 PF00589 Phage integrase family TREAZ_2505 PF02899 Phage integrase, N-terminal SAM-like domain TREAZ_2507 PF00501 AMP-binding enzyme TREAZ_2507 PF13193 AMP-binding enzyme C-terminal domain TREAZ_2514 PF03852 DNA mismatch endonuclease Vsr TREAZ_2514 PF04480 Protein of unknown function (DUF559) TREAZ_2516 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREAZ_2517 PF02574 Homocysteine S-methyltransferase TREAZ_2517 PF02607 B12 binding domain TREAZ_2517 PF02310 B12 binding domain TREAZ_2517 PF02965 Vitamin B12 dependent methionine synthase, activation domain TREAZ_2517 PF00809 Pterin binding enzyme TREAZ_2523 PF01343 Peptidase family S49 TREAZ_2525 PF13367 PrsW family intramembrane metalloprotease TREAZ_2527 PF12833 Helix-turn-helix domain TREAZ_2527 PF00072 Response regulator receiver domain TREAZ_2528 PF13173 AAA domain TREAZ_2528 PF13635 Domain of unknown function (DUF4143) TREAZ_2529 PF06580 Histidine kinase TREAZ_2529 PF02743 Cache domain TREAZ_2529 PF00672 HAMP domain TREAZ_2529 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2536 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_2536 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_2537 PF13932 GidA associated domain TREAZ_2537 PF01134 Glucose inhibited division protein A TREAZ_2540 PF01595 Cyclin M transmembrane N-terminal domain TREAZ_2540 PF00571 CBS domain TREAZ_2540 PF03471 Transporter associated domain TREAZ_2541 PF02843 Phosphoribosylglycinamide synthetase, C domain TREAZ_2541 PF02844 Phosphoribosylglycinamide synthetase, N domain TREAZ_2541 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TREAZ_2542 PF02142 MGS-like domain TREAZ_2542 PF01808 AICARFT/IMPCHase bienzyme TREAZ_2543 PF00551 Formyl transferase TREAZ_2544 PF02769 AIR synthase related protein, C-terminal domain TREAZ_2544 PF00586 AIR synthase related protein, N-terminal domain TREAZ_2545 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2547 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2548 PF01547 Bacterial extracellular solute-binding protein TREAZ_2551 PF00356 Bacterial regulatory proteins, lacI family TREAZ_2553 PF01695 IstB-like ATP binding protein TREAZ_2554 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2554 PF01627 Hpt domain TREAZ_2554 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2554 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2554 PF00072 Response regulator receiver domain TREAZ_2554 PF00672 HAMP domain TREAZ_2555 PF00156 Phosphoribosyl transferase domain TREAZ_2556 PF01259 SAICAR synthetase TREAZ_2557 PF00731 AIR carboxylase TREAZ_2560 PF02901 Pyruvate formate lyase-like TREAZ_2560 PF01228 Glycine radical TREAZ_2561 PF04055 Radical SAM superfamily TREAZ_2573 PF00072 Response regulator receiver domain TREAZ_2573 PF12833 Helix-turn-helix domain TREAZ_2574 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2575 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2577 PF16874 Glycosyl hydrolase family 36 C-terminal domain TREAZ_2577 PF16875 Glycosyl hydrolase family 36 N-terminal domain TREAZ_2578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2578 PF00672 HAMP domain TREAZ_2578 PF06580 Histidine kinase TREAZ_2578 PF02743 Cache domain TREAZ_2579 PF02527 rRNA small subunit methyltransferase G TREAZ_2580 PF00005 ABC transporter TREAZ_2580 PF00664 ABC transporter transmembrane region TREAZ_2581 PF00664 ABC transporter transmembrane region TREAZ_2581 PF00005 ABC transporter TREAZ_2582 PF02743 Cache domain TREAZ_2582 PF00672 HAMP domain TREAZ_2582 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_2584 PF01554 MatE TREAZ_2585 PF01047 MarR family TREAZ_2586 PF01661 Macro domain TREAZ_2587 PF00149 Calcineurin-like phosphoesterase TREAZ_2590 PF09297 NADH pyrophosphatase zinc ribbon domain TREAZ_2590 PF00293 NUDIX domain TREAZ_2591 PF02661 Fic/DOC family TREAZ_2591 PF13784 Fic/DOC family N-terminal TREAZ_2592 PF16921 Tex protein YqgF-like domain TREAZ_2592 PF09371 Tex-like protein N-terminal domain TREAZ_2592 PF17674 HHH domain TREAZ_2592 PF00575 S1 RNA binding domain TREAZ_2597 PF00872 Transposase, Mutator family TREAZ_2598 PF00226 DnaJ domain TREAZ_2598 PF00684 DnaJ central domain TREAZ_2598 PF01556 DnaJ C terminal domain TREAZ_2600 PF00684 DnaJ central domain TREAZ_2600 PF01556 DnaJ C terminal domain TREAZ_2600 PF00226 DnaJ domain TREAZ_2605 PF09261 Alpha mannosidase middle domain TREAZ_2605 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 TREAZ_2605 PF07748 Glycosyl hydrolases family 38 C-terminal domain TREAZ_2605 PF01074 Glycosyl hydrolases family 38 N-terminal domain TREAZ_2605 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain TREAZ_2613 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TREAZ_2613 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TREAZ_2614 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TREAZ_2614 PF03484 tRNA synthetase B5 domain TREAZ_2615 PF00580 UvrD/REP helicase N-terminal domain TREAZ_2615 PF12705 PD-(D/E)XK nuclease superfamily TREAZ_2615 PF13361 UvrD-like helicase C-terminal domain TREAZ_2616 PF01554 MatE TREAZ_2617 PF12705 PD-(D/E)XK nuclease superfamily TREAZ_2618 PF13375 RnfC Barrel sandwich hybrid domain TREAZ_2618 PF13237 4Fe-4S dicluster domain TREAZ_2618 PF10531 SLBB domain TREAZ_2618 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREAZ_2619 PF03116 NQR2, RnfD, RnfE family TREAZ_2620 PF04205 FMN-binding domain TREAZ_2621 PF02508 Rnf-Nqr subunit, membrane protein TREAZ_2622 PF02508 Rnf-Nqr subunit, membrane protein TREAZ_2623 PF04060 Putative Fe-S cluster TREAZ_2623 PF13187 4Fe-4S dicluster domain TREAZ_2623 PF00037 4Fe-4S binding domain TREAZ_2625 PF13416 Bacterial extracellular solute-binding protein TREAZ_2626 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2627 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2628 PF00171 Aldehyde dehydrogenase family TREAZ_2629 PF00456 Transketolase, thiamine diphosphate binding domain TREAZ_2630 PF02779 Transketolase, pyrimidine binding domain TREAZ_2630 PF02780 Transketolase, C-terminal domain TREAZ_2631 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TREAZ_2631 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TREAZ_2637 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_2637 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_2638 PF00107 Zinc-binding dehydrogenase TREAZ_2638 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_2641 PF00072 Response regulator receiver domain TREAZ_2641 PF00990 Diguanylate cyclase, GGDEF domain TREAZ_2644 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2645 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2646 PF00164 Ribosomal protein S12/S23 TREAZ_2647 PF00177 Ribosomal protein S7p/S5e TREAZ_2649 PF03143 Elongation factor Tu C-terminal domain TREAZ_2649 PF00009 Elongation factor Tu GTP binding domain TREAZ_2649 PF03144 Elongation factor Tu domain 2 TREAZ_2650 PF00338 Ribosomal protein S10p/S20e TREAZ_2651 PF00297 Ribosomal protein L3 TREAZ_2652 PF00573 Ribosomal protein L4/L1 family TREAZ_2653 PF00276 Ribosomal protein L23 TREAZ_2654 PF00181 Ribosomal Proteins L2, RNA binding domain TREAZ_2654 PF03947 Ribosomal Proteins L2, C-terminal domain TREAZ_2655 PF00203 Ribosomal protein S19 TREAZ_2656 PF00237 Ribosomal protein L22p/L17e TREAZ_2657 PF00189 Ribosomal protein S3, C-terminal domain TREAZ_2657 PF07650 KH domain TREAZ_2658 PF00252 Ribosomal protein L16p/L10e TREAZ_2659 PF00831 Ribosomal L29 protein TREAZ_2660 PF00366 Ribosomal protein S17 TREAZ_2661 PF00238 Ribosomal protein L14p/L23e TREAZ_2662 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TREAZ_2662 PF00467 KOW motif TREAZ_2663 PF00673 ribosomal L5P family C-terminus TREAZ_2663 PF00281 Ribosomal protein L5 TREAZ_2664 PF00253 Ribosomal protein S14p/S29e TREAZ_2665 PF00410 Ribosomal protein S8 TREAZ_2666 PF00347 Ribosomal protein L6 TREAZ_2667 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TREAZ_2668 PF00333 Ribosomal protein S5, N-terminal domain TREAZ_2668 PF03719 Ribosomal protein S5, C-terminal domain TREAZ_2669 PF00327 Ribosomal protein L30p/L7e TREAZ_2670 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TREAZ_2671 PF00344 SecY translocase TREAZ_2672 PF00416 Ribosomal protein S13/S18 TREAZ_2673 PF00411 Ribosomal protein S11 TREAZ_2674 PF00163 Ribosomal protein S4/S9 N-terminal domain TREAZ_2674 PF01479 S4 domain TREAZ_2675 PF01000 RNA polymerase Rpb3/RpoA insert domain TREAZ_2675 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TREAZ_2675 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TREAZ_2676 PF01196 Ribosomal protein L17 TREAZ_2679 PF09587 Bacterial capsule synthesis protein PGA_cap TREAZ_2681 PF17827 PrmC N-terminal domain TREAZ_2681 PF13847 Methyltransferase domain TREAZ_2682 PF03462 PCRF domain TREAZ_2682 PF00472 RF-1 domain TREAZ_2687 PF00872 Transposase, Mutator family TREAZ_2692 PF12848 ABC transporter TREAZ_2692 PF00005 ABC transporter TREAZ_2693 PF00270 DEAD/DEAH box helicase TREAZ_2693 PF00271 Helicase conserved C-terminal domain TREAZ_2694 PF01972 Serine dehydrogenase proteinase TREAZ_2694 PF01957 NfeD-like C-terminal, partner-binding TREAZ_2695 PF12127 SigmaW regulon antibacterial TREAZ_2703 PF04012 PspA/IM30 family TREAZ_2707 PF00588 SpoU rRNA Methylase family TREAZ_2709 PF04452 RNA methyltransferase TREAZ_2710 PF13180 PDZ domain TREAZ_2710 PF03572 Peptidase family S41 TREAZ_2713 PF02368 Bacterial Ig-like domain (group 2) TREAZ_2715 PF00395 S-layer homology domain TREAZ_2715 PF00331 Glycosyl hydrolase family 10 TREAZ_2715 PF02018 Carbohydrate binding domain TREAZ_2715 PF06452 Carbohydrate family 9 binding domain-like TREAZ_2716 PF02368 Bacterial Ig-like domain (group 2) TREAZ_2717 PF02018 Carbohydrate binding domain TREAZ_2717 PF06452 Carbohydrate family 9 binding domain-like TREAZ_2717 PF00331 Glycosyl hydrolase family 10 TREAZ_2717 PF00395 S-layer homology domain TREAZ_2718 PF02018 Carbohydrate binding domain TREAZ_2718 PF06452 Carbohydrate family 9 binding domain-like TREAZ_2718 PF00331 Glycosyl hydrolase family 10 TREAZ_2720 PF10609 NUBPL iron-transfer P-loop NTPase TREAZ_2722 PF01790 Prolipoprotein diacylglyceryl transferase TREAZ_2723 PF14821 Threonine synthase N terminus TREAZ_2723 PF00291 Pyridoxal-phosphate dependent enzyme TREAZ_2724 PF02810 SEC-C motif TREAZ_2725 PF03949 Malic enzyme, NAD binding domain TREAZ_2725 PF00390 Malic enzyme, N-terminal domain TREAZ_2726 PF01367 5'-3' exonuclease, C-terminal SAM fold TREAZ_2726 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TREAZ_2726 PF00476 DNA polymerase family A TREAZ_2726 PF01612 3'-5' exonuclease TREAZ_2729 PF13185 GAF domain TREAZ_2730 PF13635 Domain of unknown function (DUF4143) TREAZ_2730 PF13173 AAA domain TREAZ_2731 PF10509 Galactokinase galactose-binding signature TREAZ_2731 PF00288 GHMP kinases N terminal domain TREAZ_2731 PF08544 GHMP kinases C terminal TREAZ_2733 PF02561 Flagellar protein FliS TREAZ_2736 PF13361 UvrD-like helicase C-terminal domain TREAZ_2736 PF00580 UvrD/REP helicase N-terminal domain TREAZ_2737 PF07969 Amidohydrolase family TREAZ_2738 PF00919 Uncharacterized protein family UPF0004 TREAZ_2738 PF18693 TRAM domain TREAZ_2738 PF04055 Radical SAM superfamily TREAZ_2746 PF17862 AAA+ lid domain TREAZ_2746 PF01434 Peptidase family M41 TREAZ_2746 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_2748 PF00005 ABC transporter TREAZ_2753 PF00480 ROK family TREAZ_2754 PF13580 SIS domain TREAZ_2762 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2763 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2764 PF00392 Bacterial regulatory proteins, gntR family TREAZ_2766 PF00144 Beta-lactamase TREAZ_2769 PF00572 Ribosomal protein L13 TREAZ_2770 PF00380 Ribosomal protein S9/S16 TREAZ_2771 PF02631 RecX family TREAZ_2773 PF03807 NADP oxidoreductase coenzyme F420-dependent TREAZ_2773 PF14748 Pyrroline-5-carboxylate reductase dimerisation TREAZ_2774 PF00696 Amino acid kinase family TREAZ_2775 PF00171 Aldehyde dehydrogenase family TREAZ_2778 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TREAZ_2781 PF04452 RNA methyltransferase TREAZ_2783 PF02954 Bacterial regulatory protein, Fis family TREAZ_2783 PF00158 Sigma-54 interaction domain TREAZ_2783 PF00072 Response regulator receiver domain TREAZ_2784 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2784 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2786 PF03764 Elongation factor G, domain IV TREAZ_2786 PF14492 Elongation Factor G, domain II TREAZ_2786 PF00009 Elongation factor Tu GTP binding domain TREAZ_2786 PF00679 Elongation factor G C-terminus TREAZ_2786 PF03144 Elongation factor Tu domain 2 TREAZ_2790 PF00586 AIR synthase related protein, N-terminal domain TREAZ_2790 PF02769 AIR synthase related protein, C-terminal domain TREAZ_2790 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TREAZ_2809 PF09827 CRISPR associated protein Cas2 TREAZ_2810 PF01867 CRISPR associated protein Cas1 TREAZ_2826 PF00005 ABC transporter TREAZ_2830 PF10634 Fe2+ transport protein TREAZ_2831 PF03239 Iron permease FTR1 family TREAZ_2833 PF02558 Ketopantoate reductase PanE/ApbA TREAZ_2833 PF08546 Ketopantoate reductase PanE/ApbA C terminal TREAZ_2834 PF00916 Sulfate permease family TREAZ_2834 PF01740 STAS domain TREAZ_2837 PF01728 FtsJ-like methyltransferase TREAZ_2839 PF00348 Polyprenyl synthetase TREAZ_2841 PF01464 Transglycosylase SLT domain TREAZ_2841 PF01551 Peptidase family M23 TREAZ_2841 PF10145 Phage-related minor tail protein TREAZ_2843 PF16360 GTP-binding GTPase Middle Region TREAZ_2843 PF01926 50S ribosome-binding GTPase TREAZ_2843 PF13167 GTP-binding GTPase N-terminal TREAZ_2846 PF00795 Carbon-nitrogen hydrolase TREAZ_2846 PF02540 NAD synthase TREAZ_2847 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TREAZ_2847 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TREAZ_2850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREAZ_2850 PF00306 ATP synthase alpha/beta chain, C terminal domain TREAZ_2850 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREAZ_2851 PF00213 ATP synthase delta (OSCP) subunit TREAZ_2852 PF00430 ATP synthase B/B' CF(0) TREAZ_2853 PF00137 ATP synthase subunit C TREAZ_2854 PF00119 ATP synthase A chain TREAZ_2856 PF00990 Diguanylate cyclase, GGDEF domain TREAZ_2856 PF00072 Response regulator receiver domain TREAZ_2857 PF17854 FtsK alpha domain TREAZ_2857 PF09397 Ftsk gamma domain TREAZ_2857 PF01580 FtsK/SpoIIIE family TREAZ_2859 PF01464 Transglycosylase SLT domain TREAZ_2859 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain TREAZ_2868 PF12320 Type 5 capsule protein repressor C-terminal domain TREAZ_2868 PF00149 Calcineurin-like phosphoesterase TREAZ_2870 PF13476 AAA domain TREAZ_2873 PF02311 AraC-like ligand binding domain TREAZ_2873 PF12833 Helix-turn-helix domain TREAZ_2874 PF03952 Enolase, N-terminal domain TREAZ_2874 PF00113 Enolase, C-terminal TIM barrel domain TREAZ_2879 PF02629 CoA binding domain TREAZ_2879 PF06971 Putative DNA-binding protein N-terminus TREAZ_2880 PF00266 Aminotransferase class-V TREAZ_2881 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TREAZ_2881 PF01842 ACT domain TREAZ_2881 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TREAZ_2886 PF00834 Ribulose-phosphate 3 epimerase family TREAZ_2887 PF12706 Beta-lactamase superfamily domain TREAZ_2888 PF00107 Zinc-binding dehydrogenase TREAZ_2888 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_2889 PF00107 Zinc-binding dehydrogenase TREAZ_2889 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_2891 PF01325 Iron dependent repressor, N-terminal DNA binding domain TREAZ_2891 PF00480 ROK family TREAZ_2895 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2896 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2898 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_2898 PF00107 Zinc-binding dehydrogenase TREAZ_2902 PF00672 HAMP domain TREAZ_2902 PF00072 Response regulator receiver domain TREAZ_2902 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_2902 PF01627 Hpt domain TREAZ_2902 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2903 PF01687 Riboflavin kinase TREAZ_2903 PF06574 FAD synthetase TREAZ_2904 PF00348 Polyprenyl synthetase TREAZ_2905 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREAZ_2912 PF03773 Predicted permease TREAZ_2916 PF00890 FAD binding domain TREAZ_2916 PF04205 FMN-binding domain TREAZ_2923 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2924 PF00005 ABC transporter TREAZ_2926 PF02441 Flavoprotein TREAZ_2927 PF01040 UbiA prenyltransferase family TREAZ_2928 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TREAZ_2929 PF02424 ApbE family TREAZ_2940 PF01048 Phosphorylase superfamily TREAZ_2943 PF01026 TatD related DNase TREAZ_2944 PF01171 PP-loop family TREAZ_2945 PF00899 ThiF family TREAZ_2946 PF02347 Glycine cleavage system P-protein TREAZ_2947 PF02347 Glycine cleavage system P-protein TREAZ_2948 PF01597 Glycine cleavage H-protein TREAZ_2949 PF01571 Aminomethyltransferase folate-binding domain TREAZ_2949 PF08669 Glycine cleavage T-protein C-terminal barrel domain TREAZ_2952 PF01435 Peptidase family M48 TREAZ_2955 PF02954 Bacterial regulatory protein, Fis family TREAZ_2955 PF00158 Sigma-54 interaction domain TREAZ_2955 PF01590 GAF domain TREAZ_2956 PF00909 Ammonium Transporter Family TREAZ_2957 PF00543 Nitrogen regulatory protein P-II TREAZ_2960 PF01695 IstB-like ATP binding protein TREAZ_2961 PF00120 Glutamine synthetase, catalytic domain TREAZ_2961 PF12437 Glutamine synthetase type III N terminal TREAZ_2961 PF18318 Glutamine synthetase C-terminal domain TREAZ_2964 PF02653 Branched-chain amino acid transport system / permease component TREAZ_2965 PF00005 ABC transporter TREAZ_2969 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2970 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_2971 PF00664 ABC transporter transmembrane region TREAZ_2971 PF00005 ABC transporter TREAZ_2973 PF10396 GTP-binding protein TrmE N-terminus TREAZ_2973 PF12631 MnmE helical domain TREAZ_2973 PF01926 50S ribosome-binding GTPase TREAZ_2975 PF10415 Fumarase C C-terminus TREAZ_2975 PF00206 Lyase TREAZ_2979 PF06968 Biotin and Thiamin Synthesis associated domain TREAZ_2979 PF04055 Radical SAM superfamily TREAZ_2981 PF01627 Hpt domain TREAZ_2981 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREAZ_2981 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_2981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_2981 PF00072 Response regulator receiver domain TREAZ_2981 PF00989 PAS fold TREAZ_2982 PF02915 Rubrerythrin TREAZ_2983 PF00072 Response regulator receiver domain TREAZ_2983 PF00196 Bacterial regulatory proteins, luxR family TREAZ_2984 PF07730 Histidine kinase TREAZ_2984 PF17200 Single Cache domain 2 TREAZ_2989 PF01053 Cys/Met metabolism PLP-dependent enzyme TREAZ_2991 PF03928 Haem-degrading TREAZ_2992 PF14310 Fibronectin type III-like domain TREAZ_2992 PF01915 Glycosyl hydrolase family 3 C-terminal domain TREAZ_2992 PF07691 PA14 domain TREAZ_2992 PF00933 Glycosyl hydrolase family 3 N terminal domain TREAZ_2994 PF02384 N-6 DNA Methylase TREAZ_2995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREAZ_2999 PF01063 Amino-transferase class IV TREAZ_3001 PF02743 Cache domain TREAZ_3001 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_3001 PF00672 HAMP domain TREAZ_3003 PF13416 Bacterial extracellular solute-binding protein TREAZ_3004 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3005 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3006 PF08402 TOBE domain TREAZ_3006 PF00005 ABC transporter TREAZ_3009 PF02581 Thiamine monophosphate synthase TREAZ_3011 PF13419 Haloacid dehalogenase-like hydrolase TREAZ_3014 PF01969 Protein of unknown function DUF111 TREAZ_3016 PF13411 MerR HTH family regulatory protein TREAZ_3018 PF01544 CorA-like Mg2+ transporter protein TREAZ_3019 PF01300 Telomere recombination TREAZ_3019 PF03481 Putative GTP-binding controlling metal-binding TREAZ_3022 PF13344 Haloacid dehalogenase-like hydrolase TREAZ_3023 PF18152 DAHP synthase ferredoxin-like domain TREAZ_3023 PF00793 DAHP synthetase I family TREAZ_3024 PF01791 DeoC/LacD family aldolase TREAZ_3025 PF10369 Small subunit of acetolactate synthase TREAZ_3026 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TREAZ_3026 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TREAZ_3028 PF08502 LeuA allosteric (dimerisation) domain TREAZ_3028 PF00682 HMGL-like TREAZ_3029 PF00180 Isocitrate/isopropylmalate dehydrogenase TREAZ_3031 PF00205 Thiamine pyrophosphate enzyme, central domain TREAZ_3031 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREAZ_3031 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREAZ_3032 PF00107 Zinc-binding dehydrogenase TREAZ_3032 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_3034 PF00501 AMP-binding enzyme TREAZ_3034 PF13193 AMP-binding enzyme C-terminal domain TREAZ_3035 PF00849 RNA pseudouridylate synthase TREAZ_3038 PF00483 Nucleotidyl transferase TREAZ_3039 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TREAZ_3040 PF04321 RmlD substrate binding domain TREAZ_3041 PF16363 GDP-mannose 4,6 dehydratase TREAZ_3044 PF13173 AAA domain TREAZ_3044 PF13635 Domain of unknown function (DUF4143) TREAZ_3053 PF00483 Nucleotidyl transferase TREAZ_3055 PF16363 GDP-mannose 4,6 dehydratase TREAZ_3057 PF01370 NAD dependent epimerase/dehydratase family TREAZ_3066 PF00535 Glycosyl transferase family 2 TREAZ_3079 PF07724 AAA domain (Cdc48 subfamily) TREAZ_3079 PF17871 AAA lid domain TREAZ_3079 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_3079 PF10431 C-terminal, D2-small domain, of ClpB protein TREAZ_3079 PF02861 Clp amino terminal domain, pathogenicity island component TREAZ_3080 PF07676 WD40-like Beta Propeller Repeat TREAZ_3083 PF01070 FMN-dependent dehydrogenase TREAZ_3084 PF02952 L-fucose isomerase, C-terminal domain TREAZ_3084 PF07881 L-fucose isomerase, first N-terminal domain TREAZ_3084 PF07882 L-fucose isomerase, second N-terminal domain TREAZ_3085 PF05025 RbsD / FucU transport protein family TREAZ_3086 PF09587 Bacterial capsule synthesis protein PGA_cap TREAZ_3088 PF00155 Aminotransferase class I and II TREAZ_3089 PF00474 Sodium:solute symporter family TREAZ_3091 PF01812 5-formyltetrahydrofolate cyclo-ligase family TREAZ_3094 PF03180 NLPA lipoprotein TREAZ_3095 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3096 PF09383 NIL domain TREAZ_3096 PF00005 ABC transporter TREAZ_3097 PF00072 Response regulator receiver domain TREAZ_3098 PF00989 PAS fold TREAZ_3098 PF01627 Hpt domain TREAZ_3098 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREAZ_3098 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3098 PF00072 Response regulator receiver domain TREAZ_3098 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3099 PF00271 Helicase conserved C-terminal domain TREAZ_3099 PF00270 DEAD/DEAH box helicase TREAZ_3099 PF17191 RecG wedge domain TREAZ_3101 PF02811 PHP domain TREAZ_3101 PF14579 Helix-hairpin-helix motif TREAZ_3101 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREAZ_3101 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREAZ_3103 PF00990 Diguanylate cyclase, GGDEF domain TREAZ_3103 PF17151 Periplasmic sensor domain TREAZ_3105 PF01264 Chorismate synthase TREAZ_3106 PF00294 pfkB family carbohydrate kinase TREAZ_3107 PF00107 Zinc-binding dehydrogenase TREAZ_3107 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_3111 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TREAZ_3113 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3114 PF12911 N-terminal TM domain of oligopeptide transport permease C TREAZ_3114 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_3115 PF00005 ABC transporter TREAZ_3116 PF00005 ABC transporter TREAZ_3116 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_3117 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TREAZ_3118 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TREAZ_3122 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TREAZ_3123 PF00873 AcrB/AcrD/AcrF family TREAZ_3124 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_3124 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_3131 PF12848 ABC transporter TREAZ_3131 PF00005 ABC transporter TREAZ_3132 PF03006 Haemolysin-III related TREAZ_3133 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TREAZ_3140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_3140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_3144 PF00072 Response regulator receiver domain TREAZ_3144 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3144 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3144 PF00672 HAMP domain TREAZ_3144 PF01627 Hpt domain TREAZ_3144 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREAZ_3145 PF02954 Bacterial regulatory protein, Fis family TREAZ_3145 PF00072 Response regulator receiver domain TREAZ_3145 PF00158 Sigma-54 interaction domain TREAZ_3146 PF00871 Acetokinase family TREAZ_3147 PF00294 pfkB family carbohydrate kinase TREAZ_3148 PF01965 DJ-1/PfpI family TREAZ_3149 PF01050 Mannose-6-phosphate isomerase TREAZ_3149 PF00483 Nucleotidyl transferase TREAZ_3150 PF01327 Polypeptide deformylase TREAZ_3151 PF00551 Formyl transferase TREAZ_3151 PF02911 Formyl transferase, C-terminal domain TREAZ_3152 PF03793 PASTA domain TREAZ_3156 PF00501 AMP-binding enzyme TREAZ_3156 PF13193 AMP-binding enzyme C-terminal domain TREAZ_3158 PF08501 Shikimate dehydrogenase substrate binding domain TREAZ_3158 PF01488 Shikimate / quinate 5-dehydrogenase TREAZ_3159 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TREAZ_3161 PF00005 ABC transporter TREAZ_3161 PF00664 ABC transporter transmembrane region TREAZ_3162 PF00005 ABC transporter TREAZ_3162 PF00664 ABC transporter transmembrane region TREAZ_3164 PF00501 AMP-binding enzyme TREAZ_3164 PF13193 AMP-binding enzyme C-terminal domain TREAZ_3169 PF00285 Citrate synthase, C-terminal domain TREAZ_3170 PF07804 HipA-like C-terminal domain TREAZ_3170 PF13657 HipA N-terminal domain TREAZ_3172 PF01381 Helix-turn-helix TREAZ_3173 PF00679 Elongation factor G C-terminus TREAZ_3173 PF14492 Elongation Factor G, domain II TREAZ_3173 PF03764 Elongation factor G, domain IV TREAZ_3173 PF00009 Elongation factor Tu GTP binding domain TREAZ_3175 PF00986 DNA gyrase B subunit, carboxyl terminus TREAZ_3175 PF00204 DNA gyrase B TREAZ_3175 PF01751 Toprim domain TREAZ_3175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3176 PF01554 MatE TREAZ_3177 PF00521 DNA gyrase/topoisomerase IV, subunit A TREAZ_3179 PF00211 Adenylate and Guanylate cyclase catalytic domain TREAZ_3179 PF00672 HAMP domain TREAZ_3183 PF02542 YgbB family TREAZ_3184 PF00633 Helix-hairpin-helix motif TREAZ_3184 PF10576 Iron-sulfur binding domain of endonuclease III TREAZ_3184 PF00730 HhH-GPD superfamily base excision DNA repair protein TREAZ_3186 PF13419 Haloacid dehalogenase-like hydrolase TREAZ_3192 PF01370 NAD dependent epimerase/dehydratase family TREAZ_3194 PF13180 PDZ domain TREAZ_3199 PF01053 Cys/Met metabolism PLP-dependent enzyme TREAZ_3200 PF01053 Cys/Met metabolism PLP-dependent enzyme TREAZ_3202 PF03180 NLPA lipoprotein TREAZ_3203 PF01641 SelR domain TREAZ_3203 PF01625 Peptide methionine sulfoxide reductase TREAZ_3203 PF08534 Redoxin TREAZ_3204 PF00005 ABC transporter TREAZ_3204 PF09383 NIL domain TREAZ_3205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREAZ_3205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREAZ_3206 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3207 PF02542 YgbB family TREAZ_3207 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TREAZ_3208 PF02559 CarD-like/TRCF domain TREAZ_3209 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREAZ_3213 PF02954 Bacterial regulatory protein, Fis family TREAZ_3213 PF00158 Sigma-54 interaction domain TREAZ_3213 PF01590 GAF domain TREAZ_3214 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREAZ_3215 PF00543 Nitrogen regulatory protein P-II TREAZ_3216 PF00543 Nitrogen regulatory protein P-II TREAZ_3217 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_3218 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_3219 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_3220 PF00148 Nitrogenase component 1 type Oxidoreductase TREAZ_3221 PF04055 Radical SAM superfamily TREAZ_3221 PF02579 Dinitrogenase iron-molybdenum cofactor TREAZ_3223 PF00682 HMGL-like TREAZ_3223 PF08502 LeuA allosteric (dimerisation) domain TREAZ_3225 PF03459 TOBE domain TREAZ_3230 PF12727 PBP superfamily domain TREAZ_3230 PF12728 Helix-turn-helix domain TREAZ_3231 PF01634 ATP phosphoribosyltransferase TREAZ_3231 PF08029 HisG, C-terminal domain TREAZ_3232 PF00475 Imidazoleglycerol-phosphate dehydratase TREAZ_3233 PF00117 Glutamine amidotransferase class-I TREAZ_3234 PF00977 Histidine biosynthesis protein TREAZ_3235 PF01502 Phosphoribosyl-AMP cyclohydrolase TREAZ_3235 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TREAZ_3236 PF00155 Aminotransferase class I and II TREAZ_3237 PF00815 Histidinol dehydrogenase TREAZ_3238 PF02615 Malate/L-lactate dehydrogenase TREAZ_3239 PF13193 AMP-binding enzyme C-terminal domain TREAZ_3239 PF00501 AMP-binding enzyme TREAZ_3249 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TREAZ_3249 PF00037 4Fe-4S binding domain TREAZ_3249 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREAZ_3250 PF02256 Iron hydrogenase small subunit TREAZ_3250 PF02906 Iron only hydrogenase large subunit, C-terminal domain TREAZ_3250 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TREAZ_3250 PF00037 4Fe-4S binding domain TREAZ_3252 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3253 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3254 PF00860 Permease family TREAZ_3256 PF01791 DeoC/LacD family aldolase TREAZ_3258 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_3258 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_3259 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3260 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3261 PF01547 Bacterial extracellular solute-binding protein TREAZ_3263 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_3263 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_3264 PF12833 Helix-turn-helix domain TREAZ_3265 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_3265 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_3266 PF00884 Sulfatase TREAZ_3266 PF16347 Domain of unknown function (DUF4976) TREAZ_3268 PF00011 Hsp20/alpha crystallin family TREAZ_3270 PF13277 YmdB-like protein TREAZ_3274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3274 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3274 PF00072 Response regulator receiver domain TREAZ_3274 PF00989 PAS fold TREAZ_3274 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREAZ_3274 PF01627 Hpt domain TREAZ_3275 PF00072 Response regulator receiver domain TREAZ_3275 PF00196 Bacterial regulatory proteins, luxR family TREAZ_3276 PF07730 Histidine kinase TREAZ_3276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3276 PF13185 GAF domain TREAZ_3306 PF08271 TFIIB zinc-binding TREAZ_3308 PF03144 Elongation factor Tu domain 2 TREAZ_3308 PF00009 Elongation factor Tu GTP binding domain TREAZ_3308 PF03143 Elongation factor Tu C-terminal domain TREAZ_3316 PF00211 Adenylate and Guanylate cyclase catalytic domain TREAZ_3322 PF01467 Cytidylyltransferase-like TREAZ_3323 PF01783 Ribosomal L32p protein family TREAZ_3324 PF00550 Phosphopantetheine attachment site TREAZ_3325 PF14622 Ribonuclease-III-like TREAZ_3325 PF00035 Double-stranded RNA binding motif TREAZ_3326 PF01743 Poly A polymerase head domain TREAZ_3326 PF13735 tRNA nucleotidyltransferase domain 2 putative TREAZ_3326 PF12627 Probable RNA and SrmB- binding site of polymerase A TREAZ_3328 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TREAZ_3328 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TREAZ_3329 PF02649 Type I GTP cyclohydrolase folE2 TREAZ_3331 PF04055 Radical SAM superfamily TREAZ_3331 PF01938 TRAM domain TREAZ_3331 PF00919 Uncharacterized protein family UPF0004 TREAZ_3341 PF00579 tRNA synthetases class I (W and Y) TREAZ_3342 PF00072 Response regulator receiver domain TREAZ_3342 PF00989 PAS fold TREAZ_3342 PF01627 Hpt domain TREAZ_3342 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREAZ_3342 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3347 PF01118 Semialdehyde dehydrogenase, NAD binding domain TREAZ_3347 PF02774 Semialdehyde dehydrogenase, dimerisation domain TREAZ_3348 PF01960 ArgJ family TREAZ_3349 PF00696 Amino acid kinase family TREAZ_3350 PF00202 Aminotransferase class-III TREAZ_3351 PF00665 Integrase core domain TREAZ_3351 PF13936 Helix-turn-helix domain TREAZ_3355 PF00005 ABC transporter TREAZ_3358 PF03313 Serine dehydratase alpha chain TREAZ_3359 PF03315 Serine dehydratase beta chain TREAZ_3359 PF01842 ACT domain TREAZ_3360 PF00764 Arginosuccinate synthase TREAZ_3361 PF00206 Lyase TREAZ_3361 PF14698 Argininosuccinate lyase C-terminal TREAZ_3362 PF17149 Periplasmic sensor domain found in signal transduction proteins TREAZ_3362 PF00672 HAMP domain TREAZ_3362 PF00072 Response regulator receiver domain TREAZ_3362 PF01627 Hpt domain TREAZ_3362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3362 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3365 PF00005 ABC transporter TREAZ_3370 PF01464 Transglycosylase SLT domain TREAZ_3374 PF00301 Rubredoxin TREAZ_3376 PF02699 Preprotein translocase subunit TREAZ_3377 PF02355 Protein export membrane protein TREAZ_3378 PF02355 Protein export membrane protein TREAZ_3379 PF02401 LytB protein TREAZ_3380 PF08264 Anticodon-binding domain of tRNA TREAZ_3380 PF10458 Valyl tRNA synthetase tRNA binding arm TREAZ_3380 PF00133 tRNA synthetases class I (I, L, M and V) TREAZ_3382 PF01554 MatE TREAZ_3383 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TREAZ_3383 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TREAZ_3384 PF00121 Triosephosphate isomerase TREAZ_3384 PF00162 Phosphoglycerate kinase TREAZ_3385 PF09308 LuxQ, periplasmic TREAZ_3385 PF00072 Response regulator receiver domain TREAZ_3385 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3386 PF13458 Periplasmic binding protein TREAZ_3387 PF02653 Branched-chain amino acid transport system / permease component TREAZ_3388 PF02653 Branched-chain amino acid transport system / permease component TREAZ_3388 PF11862 Domain of unknown function (DUF3382) TREAZ_3389 PF00005 ABC transporter TREAZ_3389 PF12399 Branched-chain amino acid ATP-binding cassette transporter TREAZ_3392 PF00480 ROK family TREAZ_3397 PF00571 CBS domain TREAZ_3398 PF03840 Preprotein translocase SecG subunit TREAZ_3399 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREAZ_3402 PF01496 V-type ATPase 116kDa subunit family TREAZ_3402 PF01496 V-type ATPase 116kDa subunit family TREAZ_3406 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREAZ_3406 PF16886 ATPsynthase alpha/beta subunit N-term extension TREAZ_3406 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREAZ_3407 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREAZ_3407 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREAZ_3415 PF01813 ATP synthase subunit D TREAZ_3418 PF00226 DnaJ domain TREAZ_3418 PF01556 DnaJ C terminal domain TREAZ_3418 PF00684 DnaJ central domain TREAZ_3419 PF00557 Metallopeptidase family M24 TREAZ_3421 PF00595 PDZ domain TREAZ_3421 PF13180 PDZ domain TREAZ_3423 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREAZ_3423 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREAZ_3424 PF08676 MutL C terminal dimerisation domain TREAZ_3424 PF01119 DNA mismatch repair protein, C-terminal domain TREAZ_3425 PF02609 Exonuclease VII small subunit TREAZ_3426 PF13742 OB-fold nucleic acid binding domain TREAZ_3426 PF02601 Exonuclease VII, large subunit TREAZ_3427 PF00696 Amino acid kinase family TREAZ_3427 PF00583 Acetyltransferase (GNAT) family TREAZ_3430 PF01554 MatE TREAZ_3431 PF02805 Metal binding domain of Ada TREAZ_3431 PF12833 Helix-turn-helix domain TREAZ_3432 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TREAZ_3432 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TREAZ_3434 PF00107 Zinc-binding dehydrogenase TREAZ_3434 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_3435 PF00596 Class II Aldolase and Adducin N-terminal domain TREAZ_3437 PF02779 Transketolase, pyrimidine binding domain TREAZ_3437 PF02780 Transketolase, C-terminal domain TREAZ_3438 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TREAZ_3438 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREAZ_3439 PF02817 e3 binding domain TREAZ_3439 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TREAZ_3439 PF00364 Biotin-requiring enzyme TREAZ_3440 PF00455 DeoR C terminal sensor domain TREAZ_3440 PF08220 DeoR-like helix-turn-helix domain TREAZ_3441 PF00140 Sigma-70 factor, region 1.2 TREAZ_3441 PF04539 Sigma-70 region 3 TREAZ_3441 PF04542 Sigma-70 region 2 TREAZ_3441 PF04545 Sigma-70, region 4 TREAZ_3441 PF03979 Sigma-70 factor, region 1.1 TREAZ_3445 PF00166 Chaperonin 10 Kd subunit TREAZ_3447 PF01029 NusB family TREAZ_3449 PF01411 tRNA synthetases class II (A) TREAZ_3449 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREAZ_3452 PF00365 Phosphofructokinase TREAZ_3457 PF17863 AAA lid domain TREAZ_3457 PF07726 ATPase family associated with various cellular activities (AAA) TREAZ_3458 PF01882 Protein of unknown function DUF58 TREAZ_3460 PF00092 von Willebrand factor type A domain TREAZ_3463 PF01176 Translation initiation factor 1A / IF-1 TREAZ_3466 PF00156 Phosphoribosyl transferase domain TREAZ_3468 PF04041 beta-1,4-mannooligosaccharide phosphorylase TREAZ_3469 PF00534 Glycosyl transferases group 1 TREAZ_3469 PF13579 Glycosyl transferase 4-like domain TREAZ_3470 PF01381 Helix-turn-helix TREAZ_3480 PF00750 tRNA synthetases class I (R) TREAZ_3480 PF05746 DALR anticodon binding domain TREAZ_3480 PF03485 Arginyl tRNA synthetase N terminal domain TREAZ_3481 PF12833 Helix-turn-helix domain TREAZ_3482 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_3482 PF00005 ABC transporter TREAZ_3483 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREAZ_3484 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3485 PF12911 N-terminal TM domain of oligopeptide transport permease C TREAZ_3485 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3486 PF00005 ABC transporter TREAZ_3486 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_3488 PF11975 Family 4 glycosyl hydrolase C-terminal domain TREAZ_3488 PF02056 Family 4 glycosyl hydrolase TREAZ_3493 PF00829 Ribosomal prokaryotic L21 protein TREAZ_3495 PF01016 Ribosomal L27 protein TREAZ_3496 PF01018 GTP1/OBG TREAZ_3496 PF01926 50S ribosome-binding GTPase TREAZ_3497 PF01467 Cytidylyltransferase-like TREAZ_3501 PF08544 GHMP kinases C terminal TREAZ_3501 PF00288 GHMP kinases N terminal domain TREAZ_3502 PF04026 SpoVG TREAZ_3504 PF01386 Ribosomal L25p family TREAZ_3504 PF14693 Ribosomal protein TL5, C-terminal domain TREAZ_3505 PF11734 TilS substrate C-terminal domain TREAZ_3505 PF01171 PP-loop family TREAZ_3506 PF17862 AAA+ lid domain TREAZ_3506 PF01434 Peptidase family M41 TREAZ_3506 PF06480 FtsH Extracellular TREAZ_3506 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_3508 PF13180 PDZ domain TREAZ_3508 PF17820 PDZ domain TREAZ_3509 PF00771 FHIPEP family TREAZ_3510 PF00009 Elongation factor Tu GTP binding domain TREAZ_3510 PF06421 GTP-binding protein LepA C-terminus TREAZ_3510 PF00679 Elongation factor G C-terminus TREAZ_3510 PF14492 Elongation Factor G, domain II TREAZ_3510 PF03144 Elongation factor Tu domain 2 TREAZ_3520 PF17149 Periplasmic sensor domain found in signal transduction proteins TREAZ_3520 PF00672 HAMP domain TREAZ_3520 PF00072 Response regulator receiver domain TREAZ_3520 PF01627 Hpt domain TREAZ_3520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3520 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3521 PF13722 5TM C-terminal transporter carbon starvation CstA TREAZ_3521 PF02554 Carbon starvation protein CstA TREAZ_3522 PF00285 Citrate synthase, C-terminal domain TREAZ_3523 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3524 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3524 PF12911 N-terminal TM domain of oligopeptide transport permease C TREAZ_3525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_3525 PF00005 ABC transporter TREAZ_3526 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_3526 PF00005 ABC transporter TREAZ_3527 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREAZ_3528 PF02127 Aminopeptidase I zinc metalloprotease (M18) TREAZ_3536 PF02579 Dinitrogenase iron-molybdenum cofactor TREAZ_3536 PF04055 Radical SAM superfamily TREAZ_3537 PF01734 Patatin-like phospholipase TREAZ_3538 PF00291 Pyridoxal-phosphate dependent enzyme TREAZ_3541 PF02190 ATP-dependent protease La (LON) substrate-binding domain TREAZ_3541 PF00004 ATPase family associated with various cellular activities (AAA) TREAZ_3541 PF05362 Lon protease (S16) C-terminal proteolytic domain TREAZ_3544 PF07238 PilZ domain TREAZ_3545 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TREAZ_3548 PF04002 RadC-like JAB domain TREAZ_3549 PF03180 NLPA lipoprotein TREAZ_3550 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3551 PF09383 NIL domain TREAZ_3551 PF00005 ABC transporter TREAZ_3557 PF02608 ABC transporter substrate-binding protein PnrA-like TREAZ_3559 PF00005 ABC transporter TREAZ_3559 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_3560 PF00005 ABC transporter TREAZ_3560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREAZ_3561 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3561 PF12911 N-terminal TM domain of oligopeptide transport permease C TREAZ_3562 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3563 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREAZ_3570 PF00472 RF-1 domain TREAZ_3570 PF03462 PCRF domain TREAZ_3571 PF01139 tRNA-splicing ligase RtcB TREAZ_3577 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3577 PF00072 Response regulator receiver domain TREAZ_3577 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3577 PF09308 LuxQ, periplasmic TREAZ_3578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3578 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3578 PF01627 Hpt domain TREAZ_3578 PF00072 Response regulator receiver domain TREAZ_3580 PF00781 Diacylglycerol kinase catalytic domain TREAZ_3581 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREAZ_3581 PF00512 His Kinase A (phospho-acceptor) domain TREAZ_3581 PF01627 Hpt domain TREAZ_3581 PF00072 Response regulator receiver domain TREAZ_3582 PF17200 Single Cache domain 2 TREAZ_3582 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_3582 PF00672 HAMP domain TREAZ_3584 PF04073 Aminoacyl-tRNA editing domain TREAZ_3585 PF00149 Calcineurin-like phosphoesterase TREAZ_3585 PF02872 5'-nucleotidase, C-terminal domain TREAZ_3586 PF08323 Starch synthase catalytic domain TREAZ_3586 PF00534 Glycosyl transferases group 1 TREAZ_3588 PF14535 AMP-binding enzyme C-terminal domain TREAZ_3588 PF00501 AMP-binding enzyme TREAZ_3594 PF14535 AMP-binding enzyme C-terminal domain TREAZ_3594 PF00501 AMP-binding enzyme TREAZ_3596 PF02887 Pyruvate kinase, alpha/beta domain TREAZ_3596 PF00224 Pyruvate kinase, barrel domain TREAZ_3596 PF00391 PEP-utilising enzyme, mobile domain TREAZ_3601 PF00255 Glutathione peroxidase TREAZ_3602 PF00474 Sodium:solute symporter family TREAZ_3604 PF00270 DEAD/DEAH box helicase TREAZ_3604 PF00271 Helicase conserved C-terminal domain TREAZ_3605 PF03471 Transporter associated domain TREAZ_3605 PF01595 Cyclin M transmembrane N-terminal domain TREAZ_3605 PF00571 CBS domain TREAZ_3608 PF00155 Aminotransferase class I and II TREAZ_3610 PF13416 Bacterial extracellular solute-binding protein TREAZ_3612 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3614 PF00905 Penicillin binding protein transpeptidase domain TREAZ_3614 PF03717 Penicillin-binding Protein dimerisation domain TREAZ_3615 PF10502 Signal peptidase, peptidase S26 TREAZ_3616 PF01551 Peptidase family M23 TREAZ_3616 PF08525 Opacity-associated protein A N-terminal motif TREAZ_3616 PF01476 LysM domain TREAZ_3620 PF00768 D-alanyl-D-alanine carboxypeptidase TREAZ_3620 PF07943 Penicillin-binding protein 5, C-terminal domain TREAZ_3621 PF01336 OB-fold nucleic acid binding domain TREAZ_3621 PF00152 tRNA synthetases class II (D, K and N) TREAZ_3623 PF02677 Epoxyqueuosine reductase QueH TREAZ_3624 PF01026 TatD related DNase TREAZ_3626 PF08543 Phosphomethylpyrimidine kinase TREAZ_3626 PF02581 Thiamine monophosphate synthase TREAZ_3628 PF03551 Transcriptional regulator PadR-like family TREAZ_3632 PF00270 DEAD/DEAH box helicase TREAZ_3632 PF02559 CarD-like/TRCF domain TREAZ_3632 PF03461 TRCF domain TREAZ_3632 PF17757 UvrB interaction domain TREAZ_3632 PF00271 Helicase conserved C-terminal domain TREAZ_3635 PF01553 Acyltransferase TREAZ_3636 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TREAZ_3639 PF01695 IstB-like ATP binding protein TREAZ_3642 PF02502 Ribose/Galactose Isomerase TREAZ_3643 PF02734 DAK2 domain TREAZ_3644 PF02733 Dak1 domain TREAZ_3646 PF00107 Zinc-binding dehydrogenase TREAZ_3646 PF08240 Alcohol dehydrogenase GroES-like domain TREAZ_3647 PF17806 Sarcosine oxidase A3 domain TREAZ_3647 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREAZ_3647 PF08669 Glycine cleavage T-protein C-terminal barrel domain TREAZ_3647 PF01571 Aminomethyltransferase folate-binding domain TREAZ_3648 PF00890 FAD binding domain TREAZ_3648 PF04205 FMN-binding domain TREAZ_3649 PF01134 Glucose inhibited division protein A TREAZ_3649 PF13932 GidA associated domain TREAZ_3651 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3652 PF00528 Binding-protein-dependent transport system inner membrane component TREAZ_3653 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREAZ_3653 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREAZ_3653 PF00205 Thiamine pyrophosphate enzyme, central domain TREAZ_3654 PF00465 Iron-containing alcohol dehydrogenase TREAZ_3654 PF00171 Aldehyde dehydrogenase family TREAZ_3656 PF00672 HAMP domain TREAZ_3656 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREAZ_3656 PF02203 Tar ligand binding domain homologue TREAZ_3658 PF00005 ABC transporter TREAZ_3658 PF17755 UvrA DNA-binding domain TREAZ_3658 PF17760 UvrA interaction domain TREAZ_3660 PF02562 PhoH-like protein TREAZ_3661 PF07698 7TM receptor with intracellular HD hydrolase TREAZ_3661 PF07697 7TM-HD extracellular TREAZ_3661 PF01966 HD domain TREAZ_3662 PF02130 Uncharacterized protein family UPF0054 TREAZ_3663 PF00571 CBS domain TREAZ_3663 PF03471 Transporter associated domain