locus-tag class description Trebr_0001 PF11638 DnaA N-terminal domain Trebr_0001 PF00308 Bacterial dnaA protein Trebr_0001 PF08299 Bacterial dnaA protein helix-turn-helix Trebr_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Trebr_0002 PF02767 DNA polymerase III beta subunit, central domain Trebr_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Trebr_0003 PF02463 RecF/RecN/SMC N terminal domain Trebr_0005 PF00468 Ribosomal protein L34 Trebr_0006 PF00825 Ribonuclease P Trebr_0007 PF01809 Putative membrane protein insertion efficiency factor Trebr_0008 PF02096 60Kd inner membrane protein Trebr_0008 PF14849 YidC periplasmic domain Trebr_0009 PF01424 R3H domain Trebr_0009 PF14804 Jag N-terminus Trebr_0011 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Trebr_0016 PF00691 OmpA family Trebr_0016 PF13488 Glycine zipper Trebr_0017 PF02614 Glucuronate isomerase Trebr_0018 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Trebr_0018 PF08666 SAF domain Trebr_0019 PF01232 Mannitol dehydrogenase Rossmann domain Trebr_0019 PF08125 Mannitol dehydrogenase C-terminal domain Trebr_0020 PF01497 Periplasmic binding protein Trebr_0020 PF12833 Helix-turn-helix domain Trebr_0021 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0022 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0023 PF13416 Bacterial extracellular solute-binding protein Trebr_0031 PF08032 RNA 2'-O ribose methyltransferase substrate binding Trebr_0031 PF00588 SpoU rRNA Methylase family Trebr_0034 PF12850 Calcineurin-like phosphoesterase superfamily domain Trebr_0035 PF02082 Transcriptional regulator Trebr_0036 PF00282 Pyridoxal-dependent decarboxylase conserved domain Trebr_0037 PF00202 Aminotransferase class-III Trebr_0042 PF02056 Family 4 glycosyl hydrolase Trebr_0042 PF11975 Family 4 glycosyl hydrolase C-terminal domain Trebr_0045 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0046 PF12833 Helix-turn-helix domain Trebr_0048 PF00291 Pyridoxal-phosphate dependent enzyme Trebr_0052 PF00596 Class II Aldolase and Adducin N-terminal domain Trebr_0053 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Trebr_0053 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trebr_0054 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trebr_0054 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trebr_0058 PF17755 UvrA DNA-binding domain Trebr_0058 PF17760 UvrA interaction domain Trebr_0059 PF02567 Phenazine biosynthesis-like protein Trebr_0062 PF01676 Metalloenzyme superfamily Trebr_0063 PF01048 Phosphorylase superfamily Trebr_0065 PF02872 5'-nucleotidase, C-terminal domain Trebr_0065 PF00149 Calcineurin-like phosphoesterase Trebr_0070 PF01791 DeoC/LacD family aldolase Trebr_0071 PF02608 ABC transporter substrate-binding protein PnrA-like Trebr_0072 PF13419 Haloacid dehalogenase-like hydrolase Trebr_0078 PF00583 Acetyltransferase (GNAT) family Trebr_0082 PF01548 Transposase Trebr_0082 PF02371 Transposase IS116/IS110/IS902 family Trebr_0084 PF01555 DNA methylase Trebr_0086 PF13649 Methyltransferase domain Trebr_0087 PF00005 ABC transporter Trebr_0092 PF03786 D-mannonate dehydratase (UxuA) Trebr_0093 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Trebr_0094 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Trebr_0095 PF03480 Bacterial extracellular solute-binding protein, family 7 Trebr_0096 PF00107 Zinc-binding dehydrogenase Trebr_0096 PF08240 Alcohol dehydrogenase GroES-like domain Trebr_0097 PF08240 Alcohol dehydrogenase GroES-like domain Trebr_0097 PF00107 Zinc-binding dehydrogenase Trebr_0098 PF07729 FCD domain Trebr_0098 PF00392 Bacterial regulatory proteins, gntR family Trebr_0099 PF00106 short chain dehydrogenase Trebr_0102 PF00072 Response regulator receiver domain Trebr_0103 PF00072 Response regulator receiver domain Trebr_0103 PF01339 CheB methylesterase Trebr_0104 PF03705 CheR methyltransferase, all-alpha domain Trebr_0104 PF01739 CheR methyltransferase, SAM binding domain Trebr_0105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0105 PF01627 Hpt domain Trebr_0105 PF01584 CheW-like domain Trebr_0105 PF02895 Signal transducing histidine kinase, homodimeric domain Trebr_0107 PF01584 CheW-like domain Trebr_0108 PF03975 CheD chemotactic sensory transduction Trebr_0110 PF10609 NUBPL iron-transfer P-loop NTPase Trebr_0111 PF01757 Acyltransferase family Trebr_0113 PF00285 Citrate synthase, C-terminal domain Trebr_0115 PF04773 FecR protein Trebr_0116 PF00211 Adenylate and Guanylate cyclase catalytic domain Trebr_0118 PF16353 Domain of unknown function(DUF4981) Trebr_0118 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Trebr_0118 PF02837 Glycosyl hydrolases family 2, sugar binding domain Trebr_0118 PF02929 Beta galactosidase small chain Trebr_0118 PF00703 Glycosyl hydrolases family 2 Trebr_0119 PF02837 Glycosyl hydrolases family 2, sugar binding domain Trebr_0119 PF02929 Beta galactosidase small chain Trebr_0119 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Trebr_0119 PF00703 Glycosyl hydrolases family 2 Trebr_0119 PF16353 Domain of unknown function(DUF4981) Trebr_0120 PF13416 Bacterial extracellular solute-binding protein Trebr_0121 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0122 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0123 PF00072 Response regulator receiver domain Trebr_0123 PF00196 Bacterial regulatory proteins, luxR family Trebr_0125 PF00465 Iron-containing alcohol dehydrogenase Trebr_0126 PF07881 L-fucose isomerase, first N-terminal domain Trebr_0126 PF07882 L-fucose isomerase, second N-terminal domain Trebr_0126 PF02952 L-fucose isomerase, C-terminal domain Trebr_0127 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trebr_0127 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trebr_0129 PF02311 AraC-like ligand binding domain Trebr_0129 PF12833 Helix-turn-helix domain Trebr_0130 PF05025 RbsD / FucU transport protein family Trebr_0131 PF13407 Periplasmic binding protein domain Trebr_0132 PF00005 ABC transporter Trebr_0133 PF02653 Branched-chain amino acid transport system / permease component Trebr_0134 PF00356 Bacterial regulatory proteins, lacI family Trebr_0135 PF13411 MerR HTH family regulatory protein Trebr_0136 PF02780 Transketolase, C-terminal domain Trebr_0136 PF02779 Transketolase, pyrimidine binding domain Trebr_0136 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Trebr_0140 PF03313 Serine dehydratase alpha chain Trebr_0141 PF03466 LysR substrate binding domain Trebr_0141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Trebr_0142 PF00575 S1 RNA binding domain Trebr_0143 PF06445 GyrI-like small molecule binding domain Trebr_0143 PF12833 Helix-turn-helix domain Trebr_0148 PF01548 Transposase Trebr_0148 PF02371 Transposase IS116/IS110/IS902 family Trebr_0149 PF08378 Nuclease-related domain Trebr_0153 PF01554 MatE Trebr_0157 PF01177 Asp/Glu/Hydantoin racemase Trebr_0163 PF00512 His Kinase A (phospho-acceptor) domain Trebr_0163 PF00989 PAS fold Trebr_0163 PF16736 Single Cache-like Trebr_0163 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0165 PF00486 Transcriptional regulatory protein, C terminal Trebr_0165 PF00072 Response regulator receiver domain Trebr_0167 PF16736 Single Cache-like Trebr_0167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0167 PF00512 His Kinase A (phospho-acceptor) domain Trebr_0167 PF00989 PAS fold Trebr_0168 PF00072 Response regulator receiver domain Trebr_0168 PF00486 Transcriptional regulatory protein, C terminal Trebr_0169 PF12849 PBP superfamily domain Trebr_0170 PF04055 Radical SAM superfamily Trebr_0170 PF06463 Molybdenum Cofactor Synthesis C Trebr_0171 PF18665 Tetracyclin repressor-like, C-terminal domain Trebr_0171 PF00440 Bacterial regulatory proteins, tetR family Trebr_0172 PF00210 Ferritin-like domain Trebr_0173 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0174 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0179 PF00475 Imidazoleglycerol-phosphate dehydratase Trebr_0180 PF08029 HisG, C-terminal domain Trebr_0180 PF01634 ATP phosphoribosyltransferase Trebr_0188 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0189 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0190 PF03633 Glycosyl hydrolase family 65, C-terminal domain Trebr_0190 PF03636 Glycosyl hydrolase family 65, N-terminal domain Trebr_0190 PF03632 Glycosyl hydrolase family 65 central catalytic domain Trebr_0191 PF03632 Glycosyl hydrolase family 65 central catalytic domain Trebr_0191 PF03633 Glycosyl hydrolase family 65, C-terminal domain Trebr_0191 PF03636 Glycosyl hydrolase family 65, N-terminal domain Trebr_0192 PF13419 Haloacid dehalogenase-like hydrolase Trebr_0194 PF00072 Response regulator receiver domain Trebr_0196 PF00672 HAMP domain Trebr_0196 PF00909 Ammonium Transporter Family Trebr_0197 PF03466 LysR substrate binding domain Trebr_0197 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Trebr_0203 PF00248 Aldo/keto reductase family Trebr_0209 PF00248 Aldo/keto reductase family Trebr_0211 PF03781 Sulfatase-modifying factor enzyme 1 Trebr_0215 PF00440 Bacterial regulatory proteins, tetR family Trebr_0218 PF00873 AcrB/AcrD/AcrF family Trebr_0221 PF05193 Peptidase M16 inactive domain Trebr_0221 PF00675 Insulinase (Peptidase family M16) Trebr_0223 PF00664 ABC transporter transmembrane region Trebr_0223 PF00005 ABC transporter Trebr_0224 PF12848 ABC transporter Trebr_0224 PF00005 ABC transporter Trebr_0227 PF02743 Cache domain Trebr_0227 PF00672 HAMP domain Trebr_0227 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0229 PF01592 NifU-like N terminal domain Trebr_0229 PF04324 BFD-like [2Fe-2S] binding domain Trebr_0229 PF01106 NifU-like domain Trebr_0230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Trebr_0231 PF01202 Shikimate kinase Trebr_0233 PF00563 EAL domain Trebr_0233 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0235 PF00005 ABC transporter Trebr_0235 PF13732 Domain of unknown function (DUF4162) Trebr_0237 PF00367 phosphotransferase system, EIIB Trebr_0237 PF02378 Phosphotransferase system, EIIC Trebr_0238 PF00391 PEP-utilising enzyme, mobile domain Trebr_0238 PF02896 PEP-utilising enzyme, TIM barrel domain Trebr_0238 PF05524 PEP-utilising enzyme, N-terminal Trebr_0239 PF00381 PTS HPr component phosphorylation site Trebr_0240 PF00874 PRD domain Trebr_0240 PF03123 CAT RNA binding domain Trebr_0241 PF00232 Glycosyl hydrolase family 1 Trebr_0247 PF00117 Glutamine amidotransferase class-I Trebr_0247 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Trebr_0248 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Trebr_0248 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Trebr_0248 PF02142 MGS-like domain Trebr_0251 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Trebr_0251 PF00056 lactate/malate dehydrogenase, NAD binding domain Trebr_0252 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0253 PF01926 50S ribosome-binding GTPase Trebr_0253 PF12631 MnmE helical domain Trebr_0253 PF10396 GTP-binding protein TrmE N-terminus Trebr_0254 PF01569 PAP2 superfamily Trebr_0256 PF00392 Bacterial regulatory proteins, gntR family Trebr_0256 PF00155 Aminotransferase class I and II Trebr_0257 PF02424 ApbE family Trebr_0258 PF00672 HAMP domain Trebr_0258 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0259 PF02938 GAD domain Trebr_0259 PF00152 tRNA synthetases class II (D, K and N) Trebr_0259 PF01336 OB-fold nucleic acid binding domain Trebr_0262 PF00356 Bacterial regulatory proteins, lacI family Trebr_0263 PF05025 RbsD / FucU transport protein family Trebr_0264 PF00005 ABC transporter Trebr_0265 PF02653 Branched-chain amino acid transport system / permease component Trebr_0266 PF13407 Periplasmic binding protein domain Trebr_0267 PF00294 pfkB family carbohydrate kinase Trebr_0268 PF08447 PAS fold Trebr_0268 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0268 PF13426 PAS domain Trebr_0269 PF04011 LemA family Trebr_0274 PF03129 Anticodon binding domain Trebr_0274 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Trebr_0274 PF04073 Aminoacyl-tRNA editing domain Trebr_0277 PF00266 Aminotransferase class-V Trebr_0278 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Trebr_0278 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Trebr_0282 PF04055 Radical SAM superfamily Trebr_0286 PF03275 UDP-galactopyranose mutase Trebr_0288 PF00535 Glycosyl transferase family 2 Trebr_0291 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trebr_0291 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Trebr_0291 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Trebr_0293 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Trebr_0294 PF00535 Glycosyl transferase family 2 Trebr_0298 PF13439 Glycosyltransferase Family 4 Trebr_0298 PF00534 Glycosyl transferases group 1 Trebr_0301 PF02096 60Kd inner membrane protein Trebr_0306 PF13089 Polyphosphate kinase N-terminal domain Trebr_0306 PF17941 Polyphosphate kinase C-terminal domain 1 Trebr_0306 PF13090 Polyphosphate kinase C-terminal domain 2 Trebr_0306 PF02503 Polyphosphate kinase middle domain Trebr_0308 PF01204 Trehalase Trebr_0309 PF02934 GatB/GatE catalytic domain Trebr_0309 PF02637 GatB domain Trebr_0314 PF02308 MgtC family Trebr_0319 PF07475 HPr Serine kinase C-terminal domain Trebr_0319 PF02603 HPr Serine kinase N terminus Trebr_0321 PF00072 Response regulator receiver domain Trebr_0321 PF12833 Helix-turn-helix domain Trebr_0322 PF02743 Cache domain Trebr_0322 PF00672 HAMP domain Trebr_0322 PF06580 Histidine kinase Trebr_0322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0325 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0327 PF00501 AMP-binding enzyme Trebr_0327 PF13193 AMP-binding enzyme C-terminal domain Trebr_0328 PF00877 NlpC/P60 family Trebr_0328 PF01476 LysM domain Trebr_0333 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Trebr_0333 PF00037 4Fe-4S binding domain Trebr_0333 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Trebr_0334 PF00037 4Fe-4S binding domain Trebr_0334 PF02906 Iron only hydrogenase large subunit, C-terminal domain Trebr_0334 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Trebr_0334 PF02256 Iron hydrogenase small subunit Trebr_0335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0335 PF17200 Single Cache domain 2 Trebr_0335 PF00672 HAMP domain Trebr_0336 PF04102 SlyX Trebr_0337 PF12683 Protein of unknown function (DUF3798) Trebr_0338 PF00005 ABC transporter Trebr_0342 PF00072 Response regulator receiver domain Trebr_0342 PF00486 Transcriptional regulatory protein, C terminal Trebr_0343 PF09179 TilS substrate binding domain Trebr_0343 PF01171 PP-loop family Trebr_0343 PF11734 TilS substrate C-terminal domain Trebr_0344 PF02195 ParB-like nuclease domain Trebr_0345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0345 PF00672 HAMP domain Trebr_0346 PF00924 Mechanosensitive ion channel Trebr_0346 PF05552 Conserved TM helix Trebr_0347 PF00730 HhH-GPD superfamily base excision DNA repair protein Trebr_0348 PF02772 S-adenosylmethionine synthetase, central domain Trebr_0348 PF00438 S-adenosylmethionine synthetase, N-terminal domain Trebr_0348 PF02773 S-adenosylmethionine synthetase, C-terminal domain Trebr_0351 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Trebr_0352 PF04055 Radical SAM superfamily Trebr_0352 PF13186 Iron-sulfur cluster-binding domain Trebr_0356 PF01555 DNA methylase Trebr_0357 PF00005 ABC transporter Trebr_0357 PF09383 NIL domain Trebr_0358 PF02653 Branched-chain amino acid transport system / permease component Trebr_0364 PF00271 Helicase conserved C-terminal domain Trebr_0364 PF04851 Type III restriction enzyme, res subunit Trebr_0366 PF13419 Haloacid dehalogenase-like hydrolase Trebr_0369 PF00268 Ribonucleotide reductase, small chain Trebr_0370 PF02867 Ribonucleotide reductase, barrel domain Trebr_0370 PF00317 Ribonucleotide reductase, all-alpha domain Trebr_0370 PF03477 ATP cone domain Trebr_0371 PF16363 GDP-mannose 4,6 dehydratase Trebr_0372 PF04321 RmlD substrate binding domain Trebr_0373 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Trebr_0374 PF00483 Nucleotidyl transferase Trebr_0375 PF17762 HTH domain found in ParB protein Trebr_0375 PF02195 ParB-like nuclease domain Trebr_0376 PF13614 AAA domain Trebr_0384 PF00072 Response regulator receiver domain Trebr_0386 PF00199 Catalase Trebr_0386 PF06628 Catalase-related immune-responsive Trebr_0387 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Trebr_0387 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trebr_0389 PF00581 Rhodanese-like domain Trebr_0390 PF00294 pfkB family carbohydrate kinase Trebr_0393 PF13686 DsrE/DsrF/DrsH-like family Trebr_0395 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0396 PF11849 Domain of unknown function (DUF3369) Trebr_0397 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trebr_0397 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trebr_0398 PF00120 Glutamine synthetase, catalytic domain Trebr_0398 PF18318 Glutamine synthetase C-terminal domain Trebr_0398 PF12437 Glutamine synthetase type III N terminal Trebr_0399 PF00909 Ammonium Transporter Family Trebr_0400 PF00563 EAL domain Trebr_0400 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0400 PF03707 Bacterial signalling protein N terminal repeat Trebr_0401 PF02844 Phosphoribosylglycinamide synthetase, N domain Trebr_0401 PF02843 Phosphoribosylglycinamide synthetase, C domain Trebr_0401 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Trebr_0407 PF13186 Iron-sulfur cluster-binding domain Trebr_0407 PF04055 Radical SAM superfamily Trebr_0412 PF02384 N-6 DNA Methylase Trebr_0412 PF12161 HsdM N-terminal domain Trebr_0414 PF01554 MatE Trebr_0415 PF00999 Sodium/hydrogen exchanger family Trebr_0416 PF01554 MatE Trebr_0417 PF05167 Uncharacterised ACR (DUF711) Trebr_0418 PF18073 Rubredoxin metal binding domain Trebr_0418 PF06745 KaiC Trebr_0420 PF00480 ROK family Trebr_0421 PF00356 Bacterial regulatory proteins, lacI family Trebr_0422 PF01547 Bacterial extracellular solute-binding protein Trebr_0423 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0424 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0425 PF00294 pfkB family carbohydrate kinase Trebr_0426 PF03632 Glycosyl hydrolase family 65 central catalytic domain Trebr_0426 PF03636 Glycosyl hydrolase family 65, N-terminal domain Trebr_0426 PF03633 Glycosyl hydrolase family 65, C-terminal domain Trebr_0427 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0428 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0433 PF00672 HAMP domain Trebr_0433 PF00211 Adenylate and Guanylate cyclase catalytic domain Trebr_0438 PF00535 Glycosyl transferase family 2 Trebr_0439 PF05045 Rhamnan synthesis protein F Trebr_0439 PF14307 Glycosyltransferase WbsX Trebr_0443 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Trebr_0444 PF16363 GDP-mannose 4,6 dehydratase Trebr_0449 PF04552 Sigma-54, DNA binding domain Trebr_0449 PF04963 Sigma-54 factor, core binding domain Trebr_0449 PF00309 Sigma-54 factor, Activator interacting domain (AID) Trebr_0451 PF13335 Magnesium chelatase, subunit ChlI C-terminal Trebr_0451 PF01078 Magnesium chelatase, subunit ChlI Trebr_0452 PF00356 Bacterial regulatory proteins, lacI family Trebr_0453 PF02811 PHP domain Trebr_0454 PF00027 Cyclic nucleotide-binding domain Trebr_0454 PF13302 Acetyltransferase (GNAT) domain Trebr_0455 PF12833 Helix-turn-helix domain Trebr_0455 PF02311 AraC-like ligand binding domain Trebr_0457 PF00672 HAMP domain Trebr_0457 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0457 PF17202 Single cache domain 3 Trebr_0459 PF01966 HD domain Trebr_0459 PF00672 HAMP domain Trebr_0460 PF02080 TrkA-C domain Trebr_0460 PF00999 Sodium/hydrogen exchanger family Trebr_0460 PF03471 Transporter associated domain Trebr_0461 PF00005 ABC transporter Trebr_0461 PF12848 ABC transporter Trebr_0461 PF16326 ABC transporter C-terminal domain Trebr_0462 PF00696 Amino acid kinase family Trebr_0463 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Trebr_0463 PF03466 LysR substrate binding domain Trebr_0464 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Trebr_0464 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Trebr_0465 PF00890 FAD binding domain Trebr_0465 PF14537 Cytochrome c3 Trebr_0466 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Trebr_0466 PF00356 Bacterial regulatory proteins, lacI family Trebr_0467 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0468 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0471 PF00664 ABC transporter transmembrane region Trebr_0471 PF00005 ABC transporter Trebr_0473 PF00005 ABC transporter Trebr_0474 PF00704 Glycosyl hydrolases family 18 Trebr_0474 PF01476 LysM domain Trebr_0477 PF03372 Endonuclease/Exonuclease/phosphatase family Trebr_0478 PF03952 Enolase, N-terminal domain Trebr_0478 PF00113 Enolase, C-terminal TIM barrel domain Trebr_0483 PF02511 Thymidylate synthase complementing protein Trebr_0486 PF10996 Beta-Casp domain Trebr_0486 PF00753 Metallo-beta-lactamase superfamily Trebr_0486 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Trebr_0487 PF00365 Phosphofructokinase Trebr_0489 PF01979 Amidohydrolase family Trebr_0490 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Trebr_0490 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Trebr_0491 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Trebr_0491 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Trebr_0494 PF01554 MatE Trebr_0496 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Trebr_0496 PF06165 Glycosyltransferase family 36 Trebr_0498 PF02561 Flagellar protein FliS Trebr_0499 PF00004 ATPase family associated with various cellular activities (AAA) Trebr_0499 PF17862 AAA+ lid domain Trebr_0499 PF01434 Peptidase family M41 Trebr_0500 PF01554 MatE Trebr_0502 PF13286 Phosphohydrolase-associated domain Trebr_0502 PF01966 HD domain Trebr_0504 PF00291 Pyridoxal-phosphate dependent enzyme Trebr_0505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0505 PF00672 HAMP domain Trebr_0505 PF02743 Cache domain Trebr_0507 PF02617 ATP-dependent Clp protease adaptor protein ClpS Trebr_0508 PF17871 AAA lid domain Trebr_0508 PF00004 ATPase family associated with various cellular activities (AAA) Trebr_0508 PF10431 C-terminal, D2-small domain, of ClpB protein Trebr_0508 PF02861 Clp amino terminal domain, pathogenicity island component Trebr_0508 PF07724 AAA domain (Cdc48 subfamily) Trebr_0509 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Trebr_0511 PF04172 LrgB-like family Trebr_0512 PF03788 LrgA family Trebr_0513 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Trebr_0513 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Trebr_0514 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0514 PF13426 PAS domain Trebr_0514 PF08447 PAS fold Trebr_0515 PF01053 Cys/Met metabolism PLP-dependent enzyme Trebr_0520 PF16360 GTP-binding GTPase Middle Region Trebr_0520 PF01926 50S ribosome-binding GTPase Trebr_0520 PF13167 GTP-binding GTPase N-terminal Trebr_0523 PF04542 Sigma-70 region 2 Trebr_0523 PF08281 Sigma-70, region 4 Trebr_0525 PF00580 UvrD/REP helicase N-terminal domain Trebr_0525 PF13361 UvrD-like helicase C-terminal domain Trebr_0526 PF18693 TRAM domain Trebr_0526 PF04055 Radical SAM superfamily Trebr_0526 PF00919 Uncharacterized protein family UPF0004 Trebr_0529 PF13382 Adenine deaminase C-terminal domain Trebr_0529 PF01979 Amidohydrolase family Trebr_0530 PF05384 Sensor protein DegS Trebr_0530 PF07730 Histidine kinase Trebr_0530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0532 PF00072 Response regulator receiver domain Trebr_0532 PF00196 Bacterial regulatory proteins, luxR family Trebr_0533 PF03781 Sulfatase-modifying factor enzyme 1 Trebr_0534 PF03781 Sulfatase-modifying factor enzyme 1 Trebr_0537 PF02653 Branched-chain amino acid transport system / permease component Trebr_0538 PF00005 ABC transporter Trebr_0539 PF13407 Periplasmic binding protein domain Trebr_0540 PF13407 Periplasmic binding protein domain Trebr_0541 PF12833 Helix-turn-helix domain Trebr_0541 PF00072 Response regulator receiver domain Trebr_0541 PF12833 Helix-turn-helix domain Trebr_0541 PF00072 Response regulator receiver domain Trebr_0542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0542 PF06580 Histidine kinase Trebr_0542 PF00672 HAMP domain Trebr_0542 PF02743 Cache domain Trebr_0544 PF06445 GyrI-like small molecule binding domain Trebr_0544 PF12833 Helix-turn-helix domain Trebr_0546 PF00005 ABC transporter Trebr_0546 PF12558 ATP-binding cassette cobalt transporter Trebr_0547 PF07155 ECF-type riboflavin transporter, S component Trebr_0549 PF02142 MGS-like domain Trebr_0549 PF01808 AICARFT/IMPCHase bienzyme Trebr_0550 PF00953 Glycosyl transferase family 4 Trebr_0551 PF08239 Bacterial SH3 domain Trebr_0552 PF16326 ABC transporter C-terminal domain Trebr_0552 PF00005 ABC transporter Trebr_0552 PF12848 ABC transporter Trebr_0554 PF16363 GDP-mannose 4,6 dehydratase Trebr_0555 PF01546 Peptidase family M20/M25/M40 Trebr_0555 PF07687 Peptidase dimerisation domain Trebr_0560 PF00436 Single-strand binding protein family Trebr_0562 PF02146 Sir2 family Trebr_0563 PF01368 DHH family Trebr_0563 PF00571 CBS domain Trebr_0563 PF07085 DRTGG domain Trebr_0563 PF02833 DHHA2 domain Trebr_0565 PF02446 4-alpha-glucanotransferase Trebr_0566 PF00849 RNA pseudouridylate synthase Trebr_0566 PF01479 S4 domain Trebr_0567 PF02683 Cytochrome C biogenesis protein transmembrane region Trebr_0570 PF02608 ABC transporter substrate-binding protein PnrA-like Trebr_0571 PF00005 ABC transporter Trebr_0572 PF02653 Branched-chain amino acid transport system / permease component Trebr_0573 PF02653 Branched-chain amino acid transport system / permease component Trebr_0575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0575 PF02743 Cache domain Trebr_0575 PF00672 HAMP domain Trebr_0576 PF01921 tRNA synthetases class I (K) Trebr_0577 PF00270 DEAD/DEAH box helicase Trebr_0577 PF00271 Helicase conserved C-terminal domain Trebr_0588 PF01134 Glucose inhibited division protein A Trebr_0588 PF13932 GidA associated domain Trebr_0589 PF00962 Adenosine/AMP deaminase Trebr_0590 PF01432 Peptidase family M3 Trebr_0590 PF08439 Oligopeptidase F Trebr_0591 PF00271 Helicase conserved C-terminal domain Trebr_0591 PF00270 DEAD/DEAH box helicase Trebr_0592 PF00691 OmpA family Trebr_0594 PF00563 EAL domain Trebr_0594 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0594 PF03707 Bacterial signalling protein N terminal repeat Trebr_0595 PF13416 Bacterial extracellular solute-binding protein Trebr_0596 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0597 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0598 PF08402 TOBE domain Trebr_0598 PF00005 ABC transporter Trebr_0600 PF05437 Branched-chain amino acid transport protein (AzlD) Trebr_0601 PF03591 AzlC protein Trebr_0604 PF03819 MazG nucleotide pyrophosphohydrolase domain Trebr_0605 PF01195 Peptidyl-tRNA hydrolase Trebr_0606 PF00574 Clp protease Trebr_0608 PF03880 DbpA RNA binding domain Trebr_0610 PF02690 Na+/Pi-cotransporter Trebr_0614 PF00005 ABC transporter Trebr_0615 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0616 PF00133 tRNA synthetases class I (I, L, M and V) Trebr_0616 PF10458 Valyl tRNA synthetase tRNA binding arm Trebr_0616 PF08264 Anticodon-binding domain of tRNA Trebr_0618 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Trebr_0619 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Trebr_0619 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Trebr_0621 PF01590 GAF domain Trebr_0621 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0621 PF00563 EAL domain Trebr_0621 PF00360 Phytochrome region Trebr_0623 PF16193 AAA C-terminal domain Trebr_0623 PF12002 MgsA AAA+ ATPase C terminal Trebr_0623 PF00004 ATPase family associated with various cellular activities (AAA) Trebr_0626 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Trebr_0626 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Trebr_0627 PF02649 Type I GTP cyclohydrolase folE2 Trebr_0629 PF00919 Uncharacterized protein family UPF0004 Trebr_0629 PF04055 Radical SAM superfamily Trebr_0629 PF01938 TRAM domain Trebr_0633 PF13649 Methyltransferase domain Trebr_0634 PF00572 Ribosomal protein L13 Trebr_0635 PF00380 Ribosomal protein S9/S16 Trebr_0636 PF02631 RecX family Trebr_0637 PF00072 Response regulator receiver domain Trebr_0637 PF00486 Transcriptional regulatory protein, C terminal Trebr_0640 PF07228 Stage II sporulation protein E (SpoIIE) Trebr_0640 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain Trebr_0641 PF01343 Peptidase family S49 Trebr_0644 PF16314 Domain of unknown function (DUF4954) Trebr_0646 PF12833 Helix-turn-helix domain Trebr_0646 PF02311 AraC-like ligand binding domain Trebr_0647 PF00701 Dihydrodipicolinate synthetase family Trebr_0648 PF02774 Semialdehyde dehydrogenase, dimerisation domain Trebr_0648 PF01118 Semialdehyde dehydrogenase, NAD binding domain Trebr_0649 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Trebr_0649 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Trebr_0651 PF00293 NUDIX domain Trebr_0651 PF09297 NADH pyrophosphatase zinc ribbon domain Trebr_0651 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Trebr_0652 PF00731 AIR carboxylase Trebr_0653 PF01259 SAICAR synthetase Trebr_0654 PF00156 Phosphoribosyl transferase domain Trebr_0655 PF00586 AIR synthase related protein, N-terminal domain Trebr_0655 PF02769 AIR synthase related protein, C-terminal domain Trebr_0656 PF00551 Formyl transferase Trebr_0657 PF02447 GntP family permease Trebr_0658 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Trebr_0659 PF07005 Sugar-binding N-terminal domain Trebr_0659 PF17042 Nucleotide-binding C-terminal domain Trebr_0660 PF00455 DeoR C terminal sensor domain Trebr_0660 PF08220 DeoR-like helix-turn-helix domain Trebr_0661 PF12631 MnmE helical domain Trebr_0661 PF01926 50S ribosome-binding GTPase Trebr_0661 PF10396 GTP-binding protein TrmE N-terminus Trebr_0663 PF06968 Biotin and Thiamin Synthesis associated domain Trebr_0663 PF04055 Radical SAM superfamily Trebr_0665 PF00392 Bacterial regulatory proteins, gntR family Trebr_0666 PF00005 ABC transporter Trebr_0668 PF00155 Aminotransferase class I and II Trebr_0670 PF14535 AMP-binding enzyme C-terminal domain Trebr_0670 PF00501 AMP-binding enzyme Trebr_0672 PF03781 Sulfatase-modifying factor enzyme 1 Trebr_0674 PF00310 Glutamine amidotransferases class-II Trebr_0675 PF13187 4Fe-4S dicluster domain Trebr_0675 PF01645 Conserved region in glutamate synthase Trebr_0676 PF13247 4Fe-4S dicluster domain Trebr_0679 PF01380 SIS domain Trebr_0680 PF12705 PD-(D/E)XK nuclease superfamily Trebr_0680 PF13361 UvrD-like helicase C-terminal domain Trebr_0680 PF00580 UvrD/REP helicase N-terminal domain Trebr_0684 PF00128 Alpha amylase, catalytic domain Trebr_0685 PF00128 Alpha amylase, catalytic domain Trebr_0685 PF17999 Pullulanase N1-terminal domain Trebr_0685 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Trebr_0686 PF13416 Bacterial extracellular solute-binding protein Trebr_0687 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0688 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0689 PF11941 Domain of unknown function (DUF3459) Trebr_0689 PF00128 Alpha amylase, catalytic domain Trebr_0690 PF03951 Glutamine synthetase, beta-Grasp domain Trebr_0690 PF00120 Glutamine synthetase, catalytic domain Trebr_0693 PF00733 Asparagine synthase Trebr_0693 PF13537 Glutamine amidotransferase domain Trebr_0694 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Trebr_0694 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Trebr_0695 PF00698 Acyl transferase domain Trebr_0697 PF02801 Beta-ketoacyl synthase, C-terminal domain Trebr_0697 PF00109 Beta-ketoacyl synthase, N-terminal domain Trebr_0698 PF07977 FabA-like domain Trebr_0702 PF13180 PDZ domain Trebr_0703 PF00005 ABC transporter Trebr_0704 PF01895 PhoU domain Trebr_0706 PF00005 ABC transporter Trebr_0708 PF00551 Formyl transferase Trebr_0708 PF01842 ACT domain Trebr_0710 PF01613 Flavin reductase like domain Trebr_0710 PF00753 Metallo-beta-lactamase superfamily Trebr_0712 PF06580 Histidine kinase Trebr_0712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0712 PF07694 5TMR of 5TMR-LYT Trebr_0713 PF00072 Response regulator receiver domain Trebr_0714 PF03480 Bacterial extracellular solute-binding protein, family 7 Trebr_0716 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Trebr_0717 PF03480 Bacterial extracellular solute-binding protein, family 7 Trebr_0718 PF00013 KH domain Trebr_0718 PF12072 Domain of unknown function (DUF3552) Trebr_0718 PF01966 HD domain Trebr_0719 PF01739 CheR methyltransferase, SAM binding domain Trebr_0719 PF03705 CheR methyltransferase, all-alpha domain Trebr_0720 PF00072 Response regulator receiver domain Trebr_0720 PF01339 CheB methylesterase Trebr_0723 PF00348 Polyprenyl synthetase Trebr_0724 PF01728 FtsJ-like methyltransferase Trebr_0725 PF01551 Peptidase family M23 Trebr_0725 PF01464 Transglycosylase SLT domain Trebr_0725 PF10145 Phage-related minor tail protein Trebr_0726 PF01381 Helix-turn-helix Trebr_0728 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Trebr_0728 PF00205 Thiamine pyrophosphate enzyme, central domain Trebr_0728 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Trebr_0729 PF05191 Adenylate kinase, active site lid Trebr_0733 PF01943 Polysaccharide biosynthesis protein Trebr_0735 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Trebr_0736 PF01820 D-ala D-ala ligase N-terminus Trebr_0736 PF07478 D-ala D-ala ligase C-terminus Trebr_0739 PF13302 Acetyltransferase (GNAT) domain Trebr_0740 PF00535 Glycosyl transferase family 2 Trebr_0746 PF00535 Glycosyl transferase family 2 Trebr_0751 PF00977 Histidine biosynthesis protein Trebr_0752 PF00117 Glutamine amidotransferase class-I Trebr_0753 PF00118 TCP-1/cpn60 chaperonin family Trebr_0754 PF00075 RNase H Trebr_0755 PF00497 Bacterial extracellular solute-binding proteins, family 3 Trebr_0756 PF00768 D-alanyl-D-alanine carboxypeptidase Trebr_0756 PF07943 Penicillin-binding protein 5, C-terminal domain Trebr_0758 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Trebr_0758 PF00205 Thiamine pyrophosphate enzyme, central domain Trebr_0758 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Trebr_0759 PF00155 Aminotransferase class I and II Trebr_0762 PF02895 Signal transducing histidine kinase, homodimeric domain Trebr_0762 PF01584 CheW-like domain Trebr_0762 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0762 PF01627 Hpt domain Trebr_0762 PF07194 P2 response regulator binding domain Trebr_0763 PF01584 CheW-like domain Trebr_0765 PF00072 Response regulator receiver domain Trebr_0767 PF01132 Elongation factor P (EF-P) OB domain Trebr_0767 PF08207 Elongation factor P (EF-P) KOW-like domain Trebr_0767 PF09285 Elongation factor P, C-terminal Trebr_0768 PF00152 tRNA synthetases class II (D, K and N) Trebr_0769 PF01171 PP-loop family Trebr_0771 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0771 PF00072 Response regulator receiver domain Trebr_0772 PF06071 Protein of unknown function (DUF933) Trebr_0772 PF01926 50S ribosome-binding GTPase Trebr_0777 PF04060 Putative Fe-S cluster Trebr_0778 PF13581 Histidine kinase-like ATPase domain Trebr_0782 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Trebr_0782 PF03129 Anticodon binding domain Trebr_0784 PF00830 Ribosomal L28 family Trebr_0785 PF13396 Phospholipase_D-nuclease N-terminal Trebr_0785 PF13091 PLD-like domain Trebr_0787 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Trebr_0787 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Trebr_0787 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Trebr_0789 PF01411 tRNA synthetases class II (A) Trebr_0789 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Trebr_0790 PF13145 PPIC-type PPIASE domain Trebr_0791 PF01029 NusB family Trebr_0793 PF00166 Chaperonin 10 Kd subunit Trebr_0794 PF00140 Sigma-70 factor, region 1.2 Trebr_0794 PF03979 Sigma-70 factor, region 1.1 Trebr_0794 PF04545 Sigma-70, region 4 Trebr_0794 PF04542 Sigma-70 region 2 Trebr_0794 PF04539 Sigma-70 region 3 Trebr_0795 PF17191 RecG wedge domain Trebr_0795 PF00271 Helicase conserved C-terminal domain Trebr_0795 PF00270 DEAD/DEAH box helicase Trebr_0796 PF02325 YGGT family Trebr_0797 PF07733 Bacterial DNA polymerase III alpha NTPase domain Trebr_0797 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Trebr_0797 PF14579 Helix-hairpin-helix motif Trebr_0797 PF02811 PHP domain Trebr_0798 PF00005 ABC transporter Trebr_0798 PF09383 NIL domain Trebr_0799 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0800 PF03180 NLPA lipoprotein Trebr_0802 PF00989 PAS fold Trebr_0802 PF00512 His Kinase A (phospho-acceptor) domain Trebr_0802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0802 PF16736 Single Cache-like Trebr_0803 PF00486 Transcriptional regulatory protein, C terminal Trebr_0803 PF00072 Response regulator receiver domain Trebr_0808 PF00483 Nucleotidyl transferase Trebr_0809 PF16363 GDP-mannose 4,6 dehydratase Trebr_0810 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Trebr_0811 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Trebr_0811 PF00205 Thiamine pyrophosphate enzyme, central domain Trebr_0811 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Trebr_0812 PF00682 HMGL-like Trebr_0812 PF07836 DmpG-like communication domain Trebr_0813 PF01761 3-dehydroquinate synthase Trebr_0814 PF16363 GDP-mannose 4,6 dehydratase Trebr_0816 PF00535 Glycosyl transferase family 2 Trebr_0818 PF00132 Bacterial transferase hexapeptide (six repeats) Trebr_0819 PF05045 Rhamnan synthesis protein F Trebr_0819 PF14307 Glycosyltransferase WbsX Trebr_0824 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Trebr_0824 PF03129 Anticodon binding domain Trebr_0824 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Trebr_0828 PF13472 GDSL-like Lipase/Acylhydrolase family Trebr_0829 PF02699 Preprotein translocase subunit Trebr_0830 PF02355 Protein export membrane protein Trebr_0831 PF02355 Protein export membrane protein Trebr_0832 PF02401 LytB protein Trebr_0833 PF04073 Aminoacyl-tRNA editing domain Trebr_0834 PF00162 Phosphoglycerate kinase Trebr_0836 PF08502 LeuA allosteric (dimerisation) domain Trebr_0836 PF00682 HMGL-like Trebr_0839 PF00464 Serine hydroxymethyltransferase Trebr_0840 PF00156 Phosphoribosyl transferase domain Trebr_0841 PF02153 Prephenate dehydrogenase Trebr_0842 PF00793 DAHP synthetase I family Trebr_0842 PF18152 DAHP synthase ferredoxin-like domain Trebr_0843 PF12833 Helix-turn-helix domain Trebr_0845 PF17760 UvrA interaction domain Trebr_0845 PF17755 UvrA DNA-binding domain Trebr_0845 PF00005 ABC transporter Trebr_0846 PF04453 LPS transport system D Trebr_0846 PF03968 OstA-like protein Trebr_0847 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Trebr_0847 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trebr_0848 PF04994 TfoX C-terminal domain Trebr_0848 PF04993 TfoX N-terminal domain Trebr_0850 PF00795 Carbon-nitrogen hydrolase Trebr_0850 PF02540 NAD synthase Trebr_0852 PF13187 4Fe-4S dicluster domain Trebr_0852 PF04060 Putative Fe-S cluster Trebr_0852 PF00037 4Fe-4S binding domain Trebr_0853 PF02508 Rnf-Nqr subunit, membrane protein Trebr_0854 PF02508 Rnf-Nqr subunit, membrane protein Trebr_0856 PF03116 NQR2, RnfD, RnfE family Trebr_0857 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Trebr_0857 PF13237 4Fe-4S dicluster domain Trebr_0857 PF13375 RnfC Barrel sandwich hybrid domain Trebr_0857 PF10531 SLBB domain Trebr_0860 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0860 PF10442 FIST C domain Trebr_0860 PF00563 EAL domain Trebr_0860 PF08495 FIST N domain Trebr_0862 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0863 PF01063 Amino-transferase class IV Trebr_0865 PF00691 OmpA family Trebr_0866 PF01476 LysM domain Trebr_0866 PF08239 Bacterial SH3 domain Trebr_0866 PF00877 NlpC/P60 family Trebr_0870 PF00301 Rubredoxin Trebr_0871 PF12704 MacB-like periplasmic core domain Trebr_0871 PF02687 FtsX-like permease family Trebr_0871 PF00005 ABC transporter Trebr_0872 PF00005 ABC transporter Trebr_0873 PF13533 Biotin-lipoyl like Trebr_0875 PF00117 Glutamine amidotransferase class-I Trebr_0875 PF06418 CTP synthase N-terminus Trebr_0878 PF00005 ABC transporter Trebr_0879 PF01814 Hemerythrin HHE cation binding domain Trebr_0881 PF00986 DNA gyrase B subunit, carboxyl terminus Trebr_0881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_0881 PF00204 DNA gyrase B Trebr_0881 PF01751 Toprim domain Trebr_0882 PF00521 DNA gyrase/topoisomerase IV, subunit A Trebr_0884 PF09186 Domain of unknown function (DUF1949) Trebr_0884 PF01205 Uncharacterized protein family UPF0029 Trebr_0886 PF00152 tRNA synthetases class II (D, K and N) Trebr_0886 PF01336 OB-fold nucleic acid binding domain Trebr_0888 PF01980 tRNA-methyltransferase O Trebr_0888 PF18389 TrmO C-terminal domain Trebr_0890 PF02881 SRP54-type protein, helical bundle domain Trebr_0890 PF00448 SRP54-type protein, GTPase domain Trebr_0890 PF02978 Signal peptide binding domain Trebr_0894 PF00990 Diguanylate cyclase, GGDEF domain Trebr_0897 PF07470 Glycosyl Hydrolase Family 88 Trebr_0898 PF05746 DALR anticodon binding domain Trebr_0898 PF03485 Arginyl tRNA synthetase N terminal domain Trebr_0898 PF00750 tRNA synthetases class I (R) Trebr_0900 PF00672 HAMP domain Trebr_0900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_0900 PF05227 CHASE3 domain Trebr_0902 PF00886 Ribosomal protein S16 Trebr_0904 PF05239 PRC-barrel domain Trebr_0904 PF01782 RimM N-terminal domain Trebr_0905 PF01746 tRNA (Guanine-1)-methyltransferase Trebr_0906 PF01245 Ribosomal protein L19 Trebr_0910 PF02021 Uncharacterised protein family UPF0102 Trebr_0918 PF01177 Asp/Glu/Hydantoin racemase Trebr_0919 PF00072 Response regulator receiver domain Trebr_0919 PF01966 HD domain Trebr_0920 PF00180 Isocitrate/isopropylmalate dehydrogenase Trebr_0924 PF02687 FtsX-like permease family Trebr_0924 PF12704 MacB-like periplasmic core domain Trebr_0924 PF00005 ABC transporter Trebr_0928 PF00005 ABC transporter Trebr_0931 PF00579 tRNA synthetases class I (W and Y) Trebr_0934 PF01966 HD domain Trebr_0934 PF00672 HAMP domain Trebr_0935 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Trebr_0936 PF05164 Cell division protein ZapA Trebr_0938 PF00453 Ribosomal protein L20 Trebr_0939 PF01632 Ribosomal protein L35 Trebr_0940 PF00707 Translation initiation factor IF-3, C-terminal domain Trebr_0940 PF05198 Translation initiation factor IF-3, N-terminal domain Trebr_0942 PF01116 Fructose-bisphosphate aldolase class-II Trebr_0946 PF02381 MraZ protein, putative antitoxin-like Trebr_0947 PF01795 MraW methylase family Trebr_0949 PF02875 Mur ligase family, glutamate ligase domain Trebr_0949 PF01225 Mur ligase family, catalytic domain Trebr_0949 PF08245 Mur ligase middle domain Trebr_0950 PF01098 Cell cycle protein Trebr_0951 PF08478 POTRA domain, FtsQ-type Trebr_0951 PF03799 Cell division protein FtsQ Trebr_0952 PF02491 SHS2 domain inserted in FTSA Trebr_0953 PF12327 FtsZ family, C-terminal domain Trebr_0953 PF00091 Tubulin/FtsZ family, GTPase domain Trebr_0954 PF02899 Phage integrase, N-terminal SAM-like domain Trebr_0954 PF00589 Phage integrase family Trebr_0956 PF02481 DNA recombination-mediator protein A Trebr_0957 PF01131 DNA topoisomerase Trebr_0957 PF01751 Toprim domain Trebr_0957 PF01396 Topoisomerase DNA binding C4 zinc finger Trebr_0958 PF00589 Phage integrase family Trebr_0958 PF02899 Phage integrase, N-terminal SAM-like domain Trebr_0959 PF00227 Proteasome subunit Trebr_0960 PF07724 AAA domain (Cdc48 subfamily) Trebr_0960 PF00004 ATPase family associated with various cellular activities (AAA) Trebr_0961 PF00460 Flagella basal body rod protein Trebr_0962 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Trebr_0962 PF00460 Flagella basal body rod protein Trebr_0963 PF02049 Flagellar hook-basal body complex protein FliE Trebr_0964 PF01514 Secretory protein of YscJ/FliF family Trebr_0964 PF08345 Flagellar M-ring protein C-terminal Trebr_0965 PF14842 FliG N-terminal domain Trebr_0965 PF14841 FliG middle domain Trebr_0965 PF01706 FliG C-terminal domain Trebr_0966 PF02108 Flagellar assembly protein FliH Trebr_0967 PF02874 ATP synthase alpha/beta family, beta-barrel domain Trebr_0967 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trebr_0967 PF18269 T3SS EscN ATPase C-terminal domain Trebr_0969 PF03129 Anticodon binding domain Trebr_0969 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Trebr_0969 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Trebr_0970 PF13439 Glycosyltransferase Family 4 Trebr_0970 PF00534 Glycosyl transferases group 1 Trebr_0971 PF02926 THUMP domain Trebr_0971 PF02568 Thiamine biosynthesis protein (ThiI) Trebr_0972 PF00501 AMP-binding enzyme Trebr_0975 PF00953 Glycosyl transferase family 4 Trebr_0977 PF01914 MarC family integral membrane protein Trebr_0978 PF14698 Argininosuccinate lyase C-terminal Trebr_0978 PF00206 Lyase Trebr_0980 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_0982 PF02562 PhoH-like protein Trebr_0983 PF07698 7TM receptor with intracellular HD hydrolase Trebr_0983 PF01966 HD domain Trebr_0983 PF07697 7TM-HD extracellular Trebr_0984 PF02130 Uncharacterized protein family UPF0054 Trebr_0985 PF03471 Transporter associated domain Trebr_0985 PF00571 CBS domain Trebr_0991 PF02881 SRP54-type protein, helical bundle domain Trebr_0991 PF00448 SRP54-type protein, GTPase domain Trebr_0993 PF12704 MacB-like periplasmic core domain Trebr_0993 PF02687 FtsX-like permease family Trebr_0994 PF00005 ABC transporter Trebr_0995 PF02687 FtsX-like permease family Trebr_0995 PF12704 MacB-like periplasmic core domain Trebr_0997 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Trebr_0998 PF17871 AAA lid domain Trebr_0998 PF07724 AAA domain (Cdc48 subfamily) Trebr_0998 PF10431 C-terminal, D2-small domain, of ClpB protein Trebr_0998 PF02861 Clp amino terminal domain, pathogenicity island component Trebr_0998 PF00004 ATPase family associated with various cellular activities (AAA) Trebr_1002 PF00486 Transcriptional regulatory protein, C terminal Trebr_1002 PF00072 Response regulator receiver domain Trebr_1003 PF00512 His Kinase A (phospho-acceptor) domain Trebr_1003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_1003 PF00672 HAMP domain Trebr_1007 PF00872 Transposase, Mutator family Trebr_1008 PF17932 Tetracyclin repressor-like, C-terminal domain Trebr_1008 PF00440 Bacterial regulatory proteins, tetR family Trebr_1010 PF04463 Protein of unknown function (DUF523) Trebr_1011 PF12833 Helix-turn-helix domain Trebr_1013 PF02811 PHP domain Trebr_1024 PF01039 Carboxyl transferase domain Trebr_1028 PF01145 SPFH domain / Band 7 family Trebr_1029 PF01145 SPFH domain / Band 7 family Trebr_1030 PF00440 Bacterial regulatory proteins, tetR family Trebr_1031 PF08021 Siderophore-interacting FAD-binding domain Trebr_1031 PF00005 ABC transporter Trebr_1031 PF00664 ABC transporter transmembrane region Trebr_1031 PF04954 Siderophore-interacting protein Trebr_1032 PF00005 ABC transporter Trebr_1032 PF00664 ABC transporter transmembrane region Trebr_1034 PF07739 TipAS antibiotic-recognition domain Trebr_1034 PF13411 MerR HTH family regulatory protein Trebr_1039 PF06441 Epoxide hydrolase N terminus Trebr_1040 PF04229 GrpB protein Trebr_1044 PF01965 DJ-1/PfpI family Trebr_1045 PF13280 WYL domain Trebr_1045 PF08279 HTH domain Trebr_1047 PF13173 AAA domain Trebr_1047 PF13635 Domain of unknown function (DUF4143) Trebr_1048 PF13649 Methyltransferase domain Trebr_1049 PF00072 Response regulator receiver domain Trebr_1051 PF10609 NUBPL iron-transfer P-loop NTPase Trebr_1054 PF00474 Sodium:solute symporter family Trebr_1055 PF01588 Putative tRNA binding domain Trebr_1056 PF01053 Cys/Met metabolism PLP-dependent enzyme Trebr_1058 PF01261 Xylose isomerase-like TIM barrel Trebr_1063 PF03412 Peptidase C39 family Trebr_1063 PF00664 ABC transporter transmembrane region Trebr_1063 PF00005 ABC transporter Trebr_1068 PF00534 Glycosyl transferases group 1 Trebr_1068 PF13439 Glycosyltransferase Family 4 Trebr_1069 PF00872 Transposase, Mutator family Trebr_1074 PF00117 Glutamine amidotransferase class-I Trebr_1074 PF02540 NAD synthase Trebr_1074 PF00958 GMP synthase C terminal domain Trebr_1075 PF00117 Glutamine amidotransferase class-I Trebr_1075 PF06418 CTP synthase N-terminus Trebr_1077 PF00334 Nucleoside diphosphate kinase Trebr_1078 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trebr_1078 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Trebr_1079 PF01960 ArgJ family Trebr_1080 PF00696 Amino acid kinase family Trebr_1081 PF00202 Aminotransferase class-III Trebr_1082 PF00356 Bacterial regulatory proteins, lacI family Trebr_1083 PF18610 Periplasmic binding protein domain Trebr_1083 PF13407 Periplasmic binding protein domain Trebr_1084 PF00005 ABC transporter Trebr_1085 PF02653 Branched-chain amino acid transport system / permease component Trebr_1086 PF01081 KDPG and KHG aldolase Trebr_1087 PF01022 Bacterial regulatory protein, arsR family Trebr_1088 PF01368 DHH family Trebr_1088 PF02272 DHHA1 domain Trebr_1088 PF17768 RecJ OB domain Trebr_1088 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Trebr_1089 PF02565 Recombination protein O C terminal Trebr_1089 PF11967 Recombination protein O N terminal Trebr_1090 PF10672 S-adenosylmethionine-dependent methyltransferase Trebr_1090 PF17785 PUA-like domain Trebr_1094 PF01026 TatD related DNase Trebr_1096 PF10502 Signal peptidase, peptidase S26 Trebr_1097 PF00704 Glycosyl hydrolases family 18 Trebr_1097 PF00041 Fibronectin type III domain Trebr_1098 PF00950 ABC 3 transport family Trebr_1099 PF00005 ABC transporter Trebr_1102 PF01425 Amidase Trebr_1103 PF02637 GatB domain Trebr_1103 PF02934 GatB/GatE catalytic domain Trebr_1107 PF03707 Bacterial signalling protein N terminal repeat Trebr_1107 PF00990 Diguanylate cyclase, GGDEF domain Trebr_1107 PF00563 EAL domain Trebr_1108 PF00672 HAMP domain Trebr_1108 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_1108 PF17202 Single cache domain 3 Trebr_1110 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Trebr_1110 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Trebr_1111 PF14572 Phosphoribosyl synthetase-associated domain Trebr_1111 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Trebr_1112 PF00365 Phosphofructokinase Trebr_1113 PF03692 Putative zinc- or iron-chelating domain Trebr_1114 PF13180 PDZ domain Trebr_1115 PF00271 Helicase conserved C-terminal domain Trebr_1115 PF04851 Type III restriction enzyme, res subunit Trebr_1115 PF02151 UvrB/uvrC motif Trebr_1115 PF12344 Ultra-violet resistance protein B Trebr_1115 PF17757 UvrB interaction domain Trebr_1116 PF18267 Rubredoxin NAD+ reductase C-terminal domain Trebr_1116 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trebr_1116 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Trebr_1116 PF04324 BFD-like [2Fe-2S] binding domain Trebr_1117 PF12706 Beta-lactamase superfamily domain Trebr_1117 PF03099 Biotin/lipoate A/B protein ligase family Trebr_1118 PF02887 Pyruvate kinase, alpha/beta domain Trebr_1118 PF00224 Pyruvate kinase, barrel domain Trebr_1118 PF00391 PEP-utilising enzyme, mobile domain Trebr_1124 PF00583 Acetyltransferase (GNAT) family Trebr_1124 PF14268 YoaP-like Trebr_1127 PF00589 Phage integrase family Trebr_1127 PF13495 Phage integrase, N-terminal SAM-like domain Trebr_1129 PF01548 Transposase Trebr_1129 PF02371 Transposase IS116/IS110/IS902 family Trebr_1130 PF00872 Transposase, Mutator family Trebr_1138 PF01313 Bacterial export proteins, family 3 Trebr_1139 PF01311 Bacterial export proteins, family 1 Trebr_1140 PF01312 FlhB HrpN YscU SpaS Family Trebr_1141 PF00771 FHIPEP family Trebr_1142 PF00448 SRP54-type protein, GTPase domain Trebr_1143 PF10609 NUBPL iron-transfer P-loop NTPase Trebr_1145 PF04542 Sigma-70 region 2 Trebr_1145 PF04539 Sigma-70 region 3 Trebr_1145 PF04545 Sigma-70, region 4 Trebr_1151 PF04101 Glycosyltransferase family 28 C-terminal domain Trebr_1151 PF03033 Glycosyltransferase family 28 N-terminal domain Trebr_1153 PF12169 DNA polymerase III subunits gamma and tau domain III Trebr_1154 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_1154 PF00512 His Kinase A (phospho-acceptor) domain Trebr_1154 PF00989 PAS fold Trebr_1155 PF00158 Sigma-54 interaction domain Trebr_1155 PF02954 Bacterial regulatory protein, Fis family Trebr_1155 PF00072 Response regulator receiver domain Trebr_1156 PF01047 MarR family Trebr_1159 PF01966 HD domain Trebr_1160 PF00330 Aconitase family (aconitate hydratase) Trebr_1161 PF01192 RNA polymerase Rpb6 Trebr_1163 PF02780 Transketolase, C-terminal domain Trebr_1163 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Trebr_1163 PF02779 Transketolase, pyrimidine binding domain Trebr_1164 PF00809 Pterin binding enzyme Trebr_1165 PF02457 DisA bacterial checkpoint controller nucleotide-binding Trebr_1167 PF01648 4'-phosphopantetheinyl transferase superfamily Trebr_1168 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) Trebr_1169 PF01416 tRNA pseudouridine synthase Trebr_1170 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Trebr_1170 PF00271 Helicase conserved C-terminal domain Trebr_1170 PF18074 Primosomal protein N C-terminal domain Trebr_1170 PF00270 DEAD/DEAH box helicase Trebr_1170 PF17764 3′ DNA-binding domain (3′BD) Trebr_1171 PF03167 Uracil DNA glycosylase superfamily Trebr_1174 PF01880 Desulfoferrodoxin Trebr_1175 PF01594 AI-2E family transporter Trebr_1176 PF02403 Seryl-tRNA synthetase N-terminal domain Trebr_1176 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Trebr_1177 PF04402 Protein of unknown function (DUF541) Trebr_1178 PF02743 Cache domain Trebr_1178 PF00672 HAMP domain Trebr_1178 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_1179 PF08245 Mur ligase middle domain Trebr_1179 PF02875 Mur ligase family, glutamate ligase domain Trebr_1179 PF01225 Mur ligase family, catalytic domain Trebr_1182 PF01263 Aldose 1-epimerase Trebr_1183 PF01991 ATP synthase (E/31 kDa) subunit Trebr_1185 PF02874 ATP synthase alpha/beta family, beta-barrel domain Trebr_1185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trebr_1185 PF16886 ATPsynthase alpha/beta subunit N-term extension Trebr_1186 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trebr_1186 PF02874 ATP synthase alpha/beta family, beta-barrel domain Trebr_1187 PF01813 ATP synthase subunit D Trebr_1190 PF04551 GcpE protein Trebr_1193 PF02397 Bacterial sugar transferase Trebr_1197 PF03477 ATP cone domain Trebr_1199 PF00005 ABC transporter Trebr_1200 PF02632 BioY family Trebr_1201 PF00795 Carbon-nitrogen hydrolase Trebr_1202 PF08544 GHMP kinases C terminal Trebr_1202 PF10509 Galactokinase galactose-binding signature Trebr_1203 PF01975 Survival protein SurE Trebr_1206 PF00817 impB/mucB/samB family Trebr_1206 PF11799 impB/mucB/samB family C-terminal domain Trebr_1206 PF11798 IMS family HHH motif Trebr_1210 PF02390 Putative methyltransferase Trebr_1211 PF01653 NAD-dependent DNA ligase adenylation domain Trebr_1211 PF03120 NAD-dependent DNA ligase OB-fold domain Trebr_1211 PF00533 BRCA1 C Terminus (BRCT) domain Trebr_1213 PF01551 Peptidase family M23 Trebr_1213 PF08525 Opacity-associated protein A N-terminal motif Trebr_1213 PF01476 LysM domain Trebr_1217 PF07664 Ferrous iron transport protein B C terminus Trebr_1217 PF17910 FeoB cytosolic helical domain Trebr_1217 PF02421 Ferrous iron transport protein B Trebr_1217 PF07670 Nucleoside recognition Trebr_1220 PF00258 Flavodoxin Trebr_1222 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Trebr_1227 PF00005 ABC transporter Trebr_1228 PF00072 Response regulator receiver domain Trebr_1228 PF12833 Helix-turn-helix domain Trebr_1229 PF06580 Histidine kinase Trebr_1229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_1229 PF00672 HAMP domain Trebr_1229 PF02743 Cache domain Trebr_1230 PF00005 ABC transporter Trebr_1231 PF00005 ABC transporter Trebr_1232 PF02653 Branched-chain amino acid transport system / permease component Trebr_1236 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trebr_1240 PF00440 Bacterial regulatory proteins, tetR family Trebr_1241 PF02535 ZIP Zinc transporter Trebr_1242 PF03466 LysR substrate binding domain Trebr_1242 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Trebr_1243 PF01717 Cobalamin-independent synthase, Catalytic domain Trebr_1243 PF08267 Cobalamin-independent synthase, N-terminal domain Trebr_1244 PF02219 Methylenetetrahydrofolate reductase Trebr_1247 PF01297 Zinc-uptake complex component A periplasmic Trebr_1248 PF00005 ABC transporter Trebr_1249 PF00950 ABC 3 transport family Trebr_1252 PF00692 dUTPase Trebr_1255 PF01702 Queuine tRNA-ribosyltransferase Trebr_1257 PF01584 CheW-like domain Trebr_1259 PF01513 ATP-NAD kinase Trebr_1260 PF02463 RecF/RecN/SMC N terminal domain Trebr_1262 PF02608 ABC transporter substrate-binding protein PnrA-like Trebr_1266 PF03459 TOBE domain Trebr_1266 PF00005 ABC transporter Trebr_1266 PF17912 MalK OB fold domain Trebr_1267 PF00773 RNB domain Trebr_1268 PF00144 Beta-lactamase Trebr_1268 PF11954 Domain of unknown function (DUF3471) Trebr_1275 PF01554 MatE Trebr_1276 PF00480 ROK family Trebr_1278 PF04539 Sigma-70 region 3 Trebr_1278 PF04542 Sigma-70 region 2 Trebr_1278 PF03979 Sigma-70 factor, region 1.1 Trebr_1278 PF00140 Sigma-70 factor, region 1.2 Trebr_1278 PF04545 Sigma-70, region 4 Trebr_1279 PF00764 Arginosuccinate synthase Trebr_1280 PF13840 ACT domain Trebr_1280 PF00696 Amino acid kinase family Trebr_1280 PF03447 Homoserine dehydrogenase, NAD binding domain Trebr_1280 PF00742 Homoserine dehydrogenase Trebr_1280 PF01842 ACT domain Trebr_1281 PF18152 DAHP synthase ferredoxin-like domain Trebr_1281 PF00793 DAHP synthetase I family Trebr_1282 PF10369 Small subunit of acetolactate synthase Trebr_1282 PF01842 ACT domain Trebr_1283 PF12832 MFS_1 like family Trebr_1284 PF04474 Protein of unknown function (DUF554) Trebr_1286 PF00271 Helicase conserved C-terminal domain Trebr_1286 PF00270 DEAD/DEAH box helicase Trebr_1287 PF00005 ABC transporter Trebr_1287 PF12848 ABC transporter Trebr_1288 PF00672 HAMP domain Trebr_1288 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_1288 PF02743 Cache domain Trebr_1290 PF00753 Metallo-beta-lactamase superfamily Trebr_1290 PF12706 Beta-lactamase superfamily domain Trebr_1291 PF00005 ABC transporter Trebr_1299 PF00398 Ribosomal RNA adenine dimethylase Trebr_1300 PF01168 Alanine racemase, N-terminal domain Trebr_1302 PF00849 RNA pseudouridylate synthase Trebr_1305 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1306 PF00005 ABC transporter Trebr_1306 PF08402 TOBE domain Trebr_1307 PF08245 Mur ligase middle domain Trebr_1307 PF02875 Mur ligase family, glutamate ligase domain Trebr_1308 PF02810 SEC-C motif Trebr_1308 PF07516 SecA Wing and Scaffold domain Trebr_1308 PF01043 SecA preprotein cross-linking domain Trebr_1308 PF07517 SecA DEAD-like domain Trebr_1312 PF00293 NUDIX domain Trebr_1315 PF00263 Bacterial type II and III secretion system protein Trebr_1315 PF03958 Bacterial type II/III secretion system short domain Trebr_1316 PF00437 Type II/IV secretion system protein Trebr_1317 PF00482 Type II secretion system (T2SS), protein F Trebr_1330 PF00872 Transposase, Mutator family Trebr_1335 PF00872 Transposase, Mutator family Trebr_1341 PF13393 Histidyl-tRNA synthetase Trebr_1342 PF03309 Type III pantothenate kinase Trebr_1343 PF00860 Permease family Trebr_1345 PF00291 Pyridoxal-phosphate dependent enzyme Trebr_1345 PF14821 Threonine synthase N terminus Trebr_1347 PF01168 Alanine racemase, N-terminal domain Trebr_1347 PF00842 Alanine racemase, C-terminal domain Trebr_1353 PF00270 DEAD/DEAH box helicase Trebr_1353 PF02559 CarD-like/TRCF domain Trebr_1353 PF03461 TRCF domain Trebr_1353 PF00271 Helicase conserved C-terminal domain Trebr_1353 PF17757 UvrB interaction domain Trebr_1354 PF13419 Haloacid dehalogenase-like hydrolase Trebr_1355 PF01098 Cell cycle protein Trebr_1356 PF03717 Penicillin-binding Protein dimerisation domain Trebr_1356 PF00905 Penicillin binding protein transpeptidase domain Trebr_1362 PF04542 Sigma-70 region 2 Trebr_1362 PF00140 Sigma-70 factor, region 1.2 Trebr_1362 PF03979 Sigma-70 factor, region 1.1 Trebr_1362 PF04545 Sigma-70, region 4 Trebr_1362 PF04539 Sigma-70 region 3 Trebr_1363 PF01807 CHC2 zinc finger Trebr_1363 PF08275 DNA primase catalytic core, N-terminal domain Trebr_1366 PF00753 Metallo-beta-lactamase superfamily Trebr_1368 PF08323 Starch synthase catalytic domain Trebr_1368 PF00534 Glycosyl transferases group 1 Trebr_1373 PF12627 Probable RNA and SrmB- binding site of polymerase A Trebr_1373 PF01743 Poly A polymerase head domain Trebr_1373 PF13735 tRNA nucleotidyltransferase domain 2 putative Trebr_1374 PF00579 tRNA synthetases class I (W and Y) Trebr_1376 PF01588 Putative tRNA binding domain Trebr_1376 PF09334 tRNA synthetases class I (M) Trebr_1386 PF01479 S4 domain Trebr_1386 PF00849 RNA pseudouridylate synthase Trebr_1388 PF12627 Probable RNA and SrmB- binding site of polymerase A Trebr_1388 PF01743 Poly A polymerase head domain Trebr_1388 PF12626 Polymerase A arginine-rich C-terminus Trebr_1390 PF10672 S-adenosylmethionine-dependent methyltransferase Trebr_1390 PF01170 Putative RNA methylase family UPF0020 Trebr_1390 PF02926 THUMP domain Trebr_1393 PF04055 Radical SAM superfamily Trebr_1395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trebr_1395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Trebr_1397 PF00694 Aconitase C-terminal domain Trebr_1398 PF00330 Aconitase family (aconitate hydratase) Trebr_1399 PF01625 Peptide methionine sulfoxide reductase Trebr_1399 PF08534 Redoxin Trebr_1399 PF01641 SelR domain Trebr_1400 PF01381 Helix-turn-helix Trebr_1401 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Trebr_1401 PF02896 PEP-utilising enzyme, TIM barrel domain Trebr_1401 PF00391 PEP-utilising enzyme, mobile domain Trebr_1403 PF04408 Helicase associated domain (HA2) Trebr_1403 PF00271 Helicase conserved C-terminal domain Trebr_1403 PF00270 DEAD/DEAH box helicase Trebr_1403 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Trebr_1404 PF02254 TrkA-N domain Trebr_1404 PF02080 TrkA-C domain Trebr_1405 PF02386 Cation transport protein Trebr_1406 PF04055 Radical SAM superfamily Trebr_1407 PF10502 Signal peptidase, peptidase S26 Trebr_1413 PF00035 Double-stranded RNA binding motif Trebr_1413 PF14622 Ribonuclease-III-like Trebr_1414 PF00550 Phosphopantetheine attachment site Trebr_1415 PF01783 Ribosomal L32p protein family Trebr_1416 PF01467 Cytidylyltransferase-like Trebr_1419 PF02545 Maf-like protein Trebr_1420 PF00318 Ribosomal protein S2 Trebr_1421 PF00889 Elongation factor TS Trebr_1422 PF01765 Ribosome recycling factor Trebr_1423 PF01255 Putative undecaprenyl diphosphate synthase Trebr_1425 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Trebr_1425 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Trebr_1425 PF13288 DXP reductoisomerase C-terminal domain Trebr_1426 PF17820 PDZ domain Trebr_1426 PF02163 Peptidase family M50 Trebr_1428 PF03796 DnaB-like helicase C terminal domain Trebr_1428 PF00772 DnaB-like helicase N terminal domain Trebr_1429 PF01281 Ribosomal protein L9, N-terminal domain Trebr_1429 PF03948 Ribosomal protein L9, C-terminal domain Trebr_1430 PF01084 Ribosomal protein S18 Trebr_1431 PF00436 Single-strand binding protein family Trebr_1432 PF01250 Ribosomal protein S6 Trebr_1433 PF09334 tRNA synthetases class I (M) Trebr_1433 PF13603 Leucyl-tRNA synthetase, Domain 2 Trebr_1433 PF00133 tRNA synthetases class I (I, L, M and V) Trebr_1433 PF08264 Anticodon-binding domain of tRNA Trebr_1434 PF16916 Dimerisation domain of Zinc Transporter Trebr_1434 PF01545 Cation efflux family Trebr_1442 PF03033 Glycosyltransferase family 28 N-terminal domain Trebr_1442 PF04101 Glycosyltransferase family 28 C-terminal domain Trebr_1444 PF00701 Dihydrodipicolinate synthetase family Trebr_1445 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1447 PF01547 Bacterial extracellular solute-binding protein Trebr_1449 PF03144 Elongation factor Tu domain 2 Trebr_1449 PF00009 Elongation factor Tu GTP binding domain Trebr_1449 PF03764 Elongation factor G, domain IV Trebr_1449 PF14492 Elongation Factor G, domain II Trebr_1449 PF00679 Elongation factor G C-terminus Trebr_1451 PF00005 ABC transporter Trebr_1451 PF00664 ABC transporter transmembrane region Trebr_1452 PF00664 ABC transporter transmembrane region Trebr_1452 PF00005 ABC transporter Trebr_1454 PF01165 Ribosomal protein S21 Trebr_1456 PF07238 PilZ domain Trebr_1460 PF13545 Crp-like helix-turn-helix domain Trebr_1460 PF00027 Cyclic nucleotide-binding domain Trebr_1461 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Trebr_1461 PF01565 FAD binding domain Trebr_1462 PF09190 DALR domain Trebr_1462 PF01406 tRNA synthetases class I (C) catalytic domain Trebr_1463 PF04545 Sigma-70, region 4 Trebr_1463 PF04539 Sigma-70 region 3 Trebr_1463 PF04542 Sigma-70 region 2 Trebr_1465 PF01833 IPT/TIG domain Trebr_1465 PF00128 Alpha amylase, catalytic domain Trebr_1465 PF00686 Starch binding domain Trebr_1465 PF02806 Alpha amylase, C-terminal all-beta domain Trebr_1466 PF00696 Amino acid kinase family Trebr_1467 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Trebr_1468 PF04002 RadC-like JAB domain Trebr_1470 PF00248 Aldo/keto reductase family Trebr_1471 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Trebr_1472 PF02861 Clp amino terminal domain, pathogenicity island component Trebr_1472 PF17871 AAA lid domain Trebr_1472 PF07724 AAA domain (Cdc48 subfamily) Trebr_1472 PF00004 ATPase family associated with various cellular activities (AAA) Trebr_1472 PF10431 C-terminal, D2-small domain, of ClpB protein Trebr_1475 PF08367 Peptidase M16C associated Trebr_1475 PF05193 Peptidase M16 inactive domain Trebr_1475 PF00675 Insulinase (Peptidase family M16) Trebr_1476 PF08502 LeuA allosteric (dimerisation) domain Trebr_1476 PF00682 HMGL-like Trebr_1479 PF01330 RuvA N terminal domain Trebr_1480 PF17864 RuvB AAA lid domain Trebr_1480 PF05496 Holliday junction DNA helicase RuvB P-loop domain Trebr_1480 PF05491 RuvB C-terminal winged helix domain Trebr_1481 PF02547 Queuosine biosynthesis protein Trebr_1482 PF02915 Rubrerythrin Trebr_1483 PF01475 Ferric uptake regulator family Trebr_1487 PF01026 TatD related DNase Trebr_1488 PF00672 HAMP domain Trebr_1488 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_1488 PF02743 Cache domain Trebr_1489 PF02743 Cache domain Trebr_1489 PF00672 HAMP domain Trebr_1489 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_1490 PF00211 Adenylate and Guanylate cyclase catalytic domain Trebr_1491 PF00072 Response regulator receiver domain Trebr_1491 PF01584 CheW-like domain Trebr_1491 PF01627 Hpt domain Trebr_1491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_1492 PF03705 CheR methyltransferase, all-alpha domain Trebr_1492 PF01739 CheR methyltransferase, SAM binding domain Trebr_1493 PF01339 CheB methylesterase Trebr_1493 PF00072 Response regulator receiver domain Trebr_1496 PF00226 DnaJ domain Trebr_1496 PF01556 DnaJ C terminal domain Trebr_1496 PF00684 DnaJ central domain Trebr_1497 PF00012 Hsp70 protein Trebr_1498 PF01025 GrpE Trebr_1500 PF03590 Aspartate-ammonia ligase Trebr_1501 PF13361 UvrD-like helicase C-terminal domain Trebr_1501 PF00580 UvrD/REP helicase N-terminal domain Trebr_1504 PF05958 tRNA (Uracil-5-)-methyltransferase Trebr_1504 PF01938 TRAM domain Trebr_1511 PF00534 Glycosyl transferases group 1 Trebr_1511 PF08323 Starch synthase catalytic domain Trebr_1512 PF00155 Aminotransferase class I and II Trebr_1514 PF01050 Mannose-6-phosphate isomerase Trebr_1514 PF00483 Nucleotidyl transferase Trebr_1515 PF08666 SAF domain Trebr_1515 PF03102 NeuB family Trebr_1516 PF01668 SmpB protein Trebr_1518 PF01300 Telomere recombination Trebr_1522 PF01973 Protein of unknown function DUF115 Trebr_1528 PF08264 Anticodon-binding domain of tRNA Trebr_1528 PF00133 tRNA synthetases class I (I, L, M and V) Trebr_1529 PF00633 Helix-hairpin-helix motif Trebr_1529 PF00730 HhH-GPD superfamily base excision DNA repair protein Trebr_1529 PF14815 NUDIX domain Trebr_1531 PF00004 ATPase family associated with various cellular activities (AAA) Trebr_1531 PF02190 ATP-dependent protease La (LON) substrate-binding domain Trebr_1531 PF05362 Lon protease (S16) C-terminal proteolytic domain Trebr_1532 PF00069 Protein kinase domain Trebr_1532 PF03793 PASTA domain Trebr_1534 PF00498 FHA domain Trebr_1534 PF01061 ABC-2 type transporter Trebr_1534 PF00005 ABC transporter Trebr_1535 PF02075 Crossover junction endodeoxyribonuclease RuvC Trebr_1536 PF01709 Transcriptional regulator Trebr_1537 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Trebr_1537 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Trebr_1539 PF01321 Creatinase/Prolidase N-terminal domain Trebr_1539 PF00557 Metallopeptidase family M24 Trebr_1542 PF01725 Ham1 family Trebr_1544 PF00700 Bacterial flagellin C-terminal helical region Trebr_1544 PF00669 Bacterial flagellin N-terminal helical region Trebr_1545 PF00669 Bacterial flagellin N-terminal helical region Trebr_1545 PF00700 Bacterial flagellin C-terminal helical region Trebr_1546 PF03646 FlaG protein Trebr_1547 PF07195 Flagellar hook-associated protein 2 C-terminus Trebr_1547 PF02465 Flagellar hook-associated protein 2 N-terminus Trebr_1550 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Trebr_1551 PF00814 Glycoprotease family Trebr_1552 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain Trebr_1552 PF02278 Polysaccharide lyase family 8, super-sandwich domain Trebr_1552 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain Trebr_1554 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain Trebr_1554 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain Trebr_1554 PF02278 Polysaccharide lyase family 8, super-sandwich domain Trebr_1556 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain Trebr_1556 PF02278 Polysaccharide lyase family 8, super-sandwich domain Trebr_1556 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain Trebr_1558 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1559 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1560 PF06445 GyrI-like small molecule binding domain Trebr_1560 PF12833 Helix-turn-helix domain Trebr_1561 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Trebr_1561 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trebr_1563 PF02910 Fumarate reductase flavoprotein C-term Trebr_1563 PF00890 FAD binding domain Trebr_1566 PF02311 AraC-like ligand binding domain Trebr_1566 PF12833 Helix-turn-helix domain Trebr_1569 PF06470 SMC proteins Flexible Hinge Domain Trebr_1569 PF02463 RecF/RecN/SMC N terminal domain Trebr_1572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Trebr_1572 PF03466 LysR substrate binding domain Trebr_1576 PF05697 Bacterial trigger factor protein (TF) Trebr_1576 PF05698 Bacterial trigger factor protein (TF) C-terminus Trebr_1576 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Trebr_1577 PF00574 Clp protease Trebr_1578 PF07724 AAA domain (Cdc48 subfamily) Trebr_1578 PF10431 C-terminal, D2-small domain, of ClpB protein Trebr_1578 PF06689 ClpX C4-type zinc finger Trebr_1580 PF00271 Helicase conserved C-terminal domain Trebr_1580 PF00270 DEAD/DEAH box helicase Trebr_1582 PF05192 MutS domain III Trebr_1582 PF01624 MutS domain I Trebr_1582 PF05188 MutS domain II Trebr_1582 PF00488 MutS domain V Trebr_1582 PF05190 MutS family domain IV Trebr_1584 PF07244 Surface antigen variable number repeat Trebr_1584 PF01103 Surface antigen Trebr_1586 PF02223 Thymidylate kinase Trebr_1588 PF01761 3-dehydroquinate synthase Trebr_1589 PF00266 Aminotransferase class-V Trebr_1592 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Trebr_1592 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Trebr_1592 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Trebr_1592 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Trebr_1593 PF00929 Exonuclease Trebr_1594 PF04542 Sigma-70 region 2 Trebr_1594 PF04539 Sigma-70 region 3 Trebr_1594 PF04545 Sigma-70, region 4 Trebr_1594 PF00140 Sigma-70 factor, region 1.2 Trebr_1595 PF01476 LysM domain Trebr_1595 PF05257 CHAP domain Trebr_1597 PF00813 FliP family Trebr_1599 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Trebr_1600 PF02154 Flagellar motor switch protein FliM Trebr_1600 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Trebr_1601 PF03748 Flagellar basal body-associated protein FliL Trebr_1602 PF00691 OmpA family Trebr_1602 PF13677 Membrane MotB of proton-channel complex MotA/MotB Trebr_1603 PF01618 MotA/TolQ/ExbB proton channel family Trebr_1605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Trebr_1605 PF00460 Flagella basal body rod protein Trebr_1605 PF07559 Flagellar basal body protein FlaE Trebr_1606 PF03963 Flagellar hook capping protein - N-terminal region Trebr_1608 PF06971 Putative DNA-binding protein N-terminus Trebr_1608 PF02629 CoA binding domain Trebr_1609 PF10672 S-adenosylmethionine-dependent methyltransferase Trebr_1612 PF01351 Ribonuclease HII Trebr_1616 PF00156 Phosphoribosyl transferase domain Trebr_1619 PF00512 His Kinase A (phospho-acceptor) domain Trebr_1619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_1619 PF13426 PAS domain Trebr_1619 PF00672 HAMP domain Trebr_1620 PF00072 Response regulator receiver domain Trebr_1620 PF00486 Transcriptional regulatory protein, C terminal Trebr_1621 PF04962 KduI/IolB family Trebr_1622 PF00425 chorismate binding enzyme Trebr_1622 PF04715 Anthranilate synthase component I, N terminal region Trebr_1623 PF00117 Glutamine amidotransferase class-I Trebr_1623 PF00591 Glycosyl transferase family, a/b domain Trebr_1623 PF02885 Glycosyl transferase family, helical bundle domain Trebr_1624 PF00218 Indole-3-glycerol phosphate synthase Trebr_1625 PF00291 Pyridoxal-phosphate dependent enzyme Trebr_1626 PF00290 Tryptophan synthase alpha chain Trebr_1627 PF00728 Glycosyl hydrolase family 20, catalytic domain Trebr_1627 PF02838 Glycosyl hydrolase family 20, domain 2 Trebr_1627 PF07691 PA14 domain Trebr_1630 PF00117 Glutamine amidotransferase class-I Trebr_1630 PF00958 GMP synthase C terminal domain Trebr_1630 PF13673 Acetyltransferase (GNAT) domain Trebr_1630 PF03352 Methyladenine glycosylase Trebr_1630 PF13302 Acetyltransferase (GNAT) domain Trebr_1631 PF02719 Polysaccharide biosynthesis protein Trebr_1632 PF02397 Bacterial sugar transferase Trebr_1636 PF02502 Ribose/Galactose Isomerase Trebr_1637 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Trebr_1638 PF00155 Aminotransferase class I and II Trebr_1639 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Trebr_1650 PF00534 Glycosyl transferases group 1 Trebr_1650 PF13439 Glycosyltransferase Family 4 Trebr_1651 PF00535 Glycosyl transferase family 2 Trebr_1661 PF03193 RsgA GTPase Trebr_1662 PF01713 Smr domain Trebr_1662 PF00488 MutS domain V Trebr_1663 PF02378 Phosphotransferase system, EIIC Trebr_1663 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Trebr_1663 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Trebr_1664 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Trebr_1667 PF01106 NifU-like domain Trebr_1667 PF01592 NifU-like N terminal domain Trebr_1667 PF04324 BFD-like [2Fe-2S] binding domain Trebr_1668 PF00266 Aminotransferase class-V Trebr_1671 PF00392 Bacterial regulatory proteins, gntR family Trebr_1671 PF00155 Aminotransferase class I and II Trebr_1672 PF09587 Bacterial capsule synthesis protein PGA_cap Trebr_1673 PF02690 Na+/Pi-cotransporter Trebr_1674 PF00206 Lyase Trebr_1674 PF10397 Adenylosuccinate lyase C-terminus Trebr_1675 PF07730 Histidine kinase Trebr_1675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_1676 PF00196 Bacterial regulatory proteins, luxR family Trebr_1676 PF00072 Response regulator receiver domain Trebr_1678 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1679 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1681 PF08402 TOBE domain Trebr_1681 PF00005 ABC transporter Trebr_1682 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1683 PF01547 Bacterial extracellular solute-binding protein Trebr_1685 PF02903 Alpha amylase, N-terminal ig-like domain Trebr_1685 PF16657 Maltogenic Amylase, C-terminal domain Trebr_1685 PF00128 Alpha amylase, catalytic domain Trebr_1686 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Trebr_1687 PF02436 Conserved carboxylase domain Trebr_1687 PF00682 HMGL-like Trebr_1687 PF00364 Biotin-requiring enzyme Trebr_1689 PF01113 Dihydrodipicolinate reductase, N-terminus Trebr_1689 PF05173 Dihydrodipicolinate reductase, C-terminus Trebr_1690 PF00696 Amino acid kinase family Trebr_1690 PF01842 ACT domain Trebr_1691 PF00595 PDZ domain Trebr_1692 PF00557 Metallopeptidase family M24 Trebr_1693 PF00226 DnaJ domain Trebr_1693 PF01556 DnaJ C terminal domain Trebr_1696 PF01813 ATP synthase subunit D Trebr_1697 PF02874 ATP synthase alpha/beta family, beta-barrel domain Trebr_1697 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trebr_1698 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trebr_1698 PF02874 ATP synthase alpha/beta family, beta-barrel domain Trebr_1698 PF16886 ATPsynthase alpha/beta subunit N-term extension Trebr_1702 PF01496 V-type ATPase 116kDa subunit family Trebr_1705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Trebr_1706 PF03840 Preprotein translocase SecG subunit Trebr_1707 PF00121 Triosephosphate isomerase Trebr_1709 PF00563 EAL domain Trebr_1709 PF03707 Bacterial signalling protein N terminal repeat Trebr_1709 PF00990 Diguanylate cyclase, GGDEF domain Trebr_1710 PF01479 S4 domain Trebr_1710 PF00849 RNA pseudouridylate synthase Trebr_1711 PF01614 Bacterial transcriptional regulator Trebr_1711 PF09339 IclR helix-turn-helix domain Trebr_1712 PF00285 Citrate synthase, C-terminal domain Trebr_1713 PF00849 RNA pseudouridylate synthase Trebr_1713 PF01479 S4 domain Trebr_1715 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Trebr_1719 PF02954 Bacterial regulatory protein, Fis family Trebr_1719 PF00072 Response regulator receiver domain Trebr_1719 PF00158 Sigma-54 interaction domain Trebr_1720 PF00575 S1 RNA binding domain Trebr_1721 PF02224 Cytidylate kinase Trebr_1722 PF00849 RNA pseudouridylate synthase Trebr_1722 PF01479 S4 domain Trebr_1723 PF04079 Segregation and condensation complex subunit ScpB Trebr_1724 PF02616 Segregation and condensation protein ScpA Trebr_1725 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Trebr_1726 PF00154 recA bacterial DNA recombination protein Trebr_1730 PF00834 Ribulose-phosphate 3 epimerase family Trebr_1733 PF14842 FliG N-terminal domain Trebr_1733 PF14841 FliG middle domain Trebr_1733 PF01706 FliG C-terminal domain Trebr_1734 PF00905 Penicillin binding protein transpeptidase domain Trebr_1734 PF00912 Transglycosylase Trebr_1734 PF17092 Penicillin-binding protein OB-like domain Trebr_1735 PF17762 HTH domain found in ParB protein Trebr_1735 PF02195 ParB-like nuclease domain Trebr_1743 PF04055 Radical SAM superfamily Trebr_1743 PF00919 Uncharacterized protein family UPF0004 Trebr_1746 PF01515 Phosphate acetyl/butaryl transferase Trebr_1748 PF13187 4Fe-4S dicluster domain Trebr_1750 PF01551 Peptidase family M23 Trebr_1750 PF04225 Opacity-associated protein A LysM-like domain Trebr_1753 PF00111 2Fe-2S iron-sulfur cluster binding domain Trebr_1753 PF01799 [2Fe-2S] binding domain Trebr_1755 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Trebr_1756 PF02719 Polysaccharide biosynthesis protein Trebr_1760 PF00483 Nucleotidyl transferase Trebr_1761 PF00892 EamA-like transporter family Trebr_1762 PF01554 MatE Trebr_1765 PF06421 GTP-binding protein LepA C-terminus Trebr_1765 PF00679 Elongation factor G C-terminus Trebr_1765 PF14492 Elongation Factor G, domain II Trebr_1765 PF00009 Elongation factor Tu GTP binding domain Trebr_1765 PF03144 Elongation factor Tu domain 2 Trebr_1766 PF13180 PDZ domain Trebr_1768 PF06480 FtsH Extracellular Trebr_1768 PF00004 ATPase family associated with various cellular activities (AAA) Trebr_1768 PF17862 AAA+ lid domain Trebr_1768 PF01434 Peptidase family M41 Trebr_1769 PF01171 PP-loop family Trebr_1770 PF14693 Ribosomal protein TL5, C-terminal domain Trebr_1770 PF01386 Ribosomal L25p family Trebr_1771 PF04026 SpoVG Trebr_1772 PF08544 GHMP kinases C terminal Trebr_1772 PF00288 GHMP kinases N terminal domain Trebr_1776 PF01966 HD domain Trebr_1777 PF01467 Cytidylyltransferase-like Trebr_1778 PF01926 50S ribosome-binding GTPase Trebr_1778 PF01018 GTP1/OBG Trebr_1779 PF01016 Ribosomal L27 protein Trebr_1781 PF00829 Ribosomal prokaryotic L21 protein Trebr_1789 PF00664 ABC transporter transmembrane region Trebr_1789 PF00005 ABC transporter Trebr_1790 PF00664 ABC transporter transmembrane region Trebr_1790 PF00005 ABC transporter Trebr_1791 PF13280 WYL domain Trebr_1791 PF08279 HTH domain Trebr_1792 PF01381 Helix-turn-helix Trebr_1794 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_1794 PF00672 HAMP domain Trebr_1801 PF02350 UDP-N-acetylglucosamine 2-epimerase Trebr_1804 PF00872 Transposase, Mutator family Trebr_1807 PF00534 Glycosyl transferases group 1 Trebr_1810 PF00534 Glycosyl transferases group 1 Trebr_1814 PF02863 Arginine repressor, C-terminal domain Trebr_1814 PF01316 Arginine repressor, DNA binding domain Trebr_1817 PF00005 ABC transporter Trebr_1819 PF00342 Phosphoglucose isomerase Trebr_1823 PF00149 Calcineurin-like phosphoesterase Trebr_1823 PF12320 Type 5 capsule protein repressor C-terminal domain Trebr_1824 PF13476 AAA domain Trebr_1826 PF00478 IMP dehydrogenase / GMP reductase domain Trebr_1826 PF00571 CBS domain Trebr_1827 PF00849 RNA pseudouridylate synthase Trebr_1828 PF00814 Glycoprotease family Trebr_1832 PF06733 DEAD_2 Trebr_1832 PF13307 Helicase C-terminal domain Trebr_1834 PF04620 Flagellar filament outer layer protein Flaa Trebr_1836 PF01520 N-acetylmuramoyl-L-alanine amidase Trebr_1836 PF04122 Putative cell wall binding repeat 2 Trebr_1837 PF02844 Phosphoribosylglycinamide synthetase, N domain Trebr_1837 PF02843 Phosphoribosylglycinamide synthetase, C domain Trebr_1837 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Trebr_1838 PF02348 Cytidylyltransferase Trebr_1842 PF02601 Exonuclease VII, large subunit Trebr_1842 PF13742 OB-fold nucleic acid binding domain Trebr_1843 PF02609 Exonuclease VII small subunit Trebr_1844 PF01119 DNA mismatch repair protein, C-terminal domain Trebr_1844 PF08676 MutL C terminal dimerisation domain Trebr_1851 PF01740 STAS domain Trebr_1853 PF02599 Global regulator protein family Trebr_1854 PF02623 FliW protein Trebr_1855 PF00669 Bacterial flagellin N-terminal helical region Trebr_1855 PF00700 Bacterial flagellin C-terminal helical region Trebr_1856 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Trebr_1856 PF07196 Flagellin hook IN motif Trebr_1858 PF00403 Heavy-metal-associated domain Trebr_1859 PF02583 Metal-sensitive transcriptional repressor Trebr_1861 PF01118 Semialdehyde dehydrogenase, NAD binding domain Trebr_1861 PF02774 Semialdehyde dehydrogenase, dimerisation domain Trebr_1862 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_1862 PF00072 Response regulator receiver domain Trebr_1872 PF00535 Glycosyl transferase family 2 Trebr_1875 PF00535 Glycosyl transferase family 2 Trebr_1876 PF13439 Glycosyltransferase Family 4 Trebr_1876 PF00534 Glycosyl transferases group 1 Trebr_1880 PF02875 Mur ligase family, glutamate ligase domain Trebr_1880 PF08245 Mur ligase middle domain Trebr_1880 PF01225 Mur ligase family, catalytic domain Trebr_1881 PF07478 D-ala D-ala ligase C-terminus Trebr_1881 PF01820 D-ala D-ala ligase N-terminus Trebr_1882 PF08245 Mur ligase middle domain Trebr_1882 PF02875 Mur ligase family, glutamate ligase domain Trebr_1883 PF00501 AMP-binding enzyme Trebr_1884 PF00709 Adenylosuccinate synthetase Trebr_1885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Trebr_1885 PF00460 Flagella basal body rod protein Trebr_1886 PF00460 Flagella basal body rod protein Trebr_1886 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Trebr_1888 PF14492 Elongation Factor G, domain II Trebr_1888 PF03144 Elongation factor Tu domain 2 Trebr_1888 PF00679 Elongation factor G C-terminus Trebr_1888 PF03764 Elongation factor G, domain IV Trebr_1888 PF00009 Elongation factor Tu GTP binding domain Trebr_1889 PF01238 Phosphomannose isomerase type I Trebr_1892 PF01048 Phosphorylase superfamily Trebr_1894 PF01145 SPFH domain / Band 7 family Trebr_1896 PF02417 Chromate transporter Trebr_1897 PF01554 MatE Trebr_1898 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Trebr_1898 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Trebr_1900 PF00005 ABC transporter Trebr_1903 PF00155 Aminotransferase class I and II Trebr_1905 PF00072 Response regulator receiver domain Trebr_1906 PF00795 Carbon-nitrogen hydrolase Trebr_1908 PF01649 Ribosomal protein S20 Trebr_1909 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Trebr_1909 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF Trebr_1909 PF01189 16S rRNA methyltransferase RsmB/F Trebr_1910 PF00849 RNA pseudouridylate synthase Trebr_1911 PF00933 Glycosyl hydrolase family 3 N terminal domain Trebr_1912 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Trebr_1913 PF03480 Bacterial extracellular solute-binding protein, family 7 Trebr_1915 PF04041 beta-1,4-mannooligosaccharide phosphorylase Trebr_1917 PF04041 beta-1,4-mannooligosaccharide phosphorylase Trebr_1920 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1921 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_1926 PF00356 Bacterial regulatory proteins, lacI family Trebr_1926 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Trebr_1928 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Trebr_1928 PF01676 Metalloenzyme superfamily Trebr_1932 PF06123 Inner membrane protein CreD Trebr_1933 PF01027 Inhibitor of apoptosis-promoting Bax1 Trebr_1936 PF03717 Penicillin-binding Protein dimerisation domain Trebr_1936 PF00905 Penicillin binding protein transpeptidase domain Trebr_1938 PF01551 Peptidase family M23 Trebr_1938 PF04225 Opacity-associated protein A LysM-like domain Trebr_1940 PF01522 Polysaccharide deacetylase Trebr_1941 PF01264 Chorismate synthase Trebr_1942 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Trebr_1942 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Trebr_1942 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Trebr_1942 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Trebr_1944 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Trebr_1945 PF02559 CarD-like/TRCF domain Trebr_1946 PF02542 YgbB family Trebr_1946 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Trebr_1948 PF13419 Haloacid dehalogenase-like hydrolase Trebr_1950 PF02472 Biopolymer transport protein ExbD/TolR Trebr_1951 PF01618 MotA/TolQ/ExbB proton channel family Trebr_1955 PF01869 BadF/BadG/BcrA/BcrD ATPase family Trebr_1958 PF00672 HAMP domain Trebr_1958 PF00211 Adenylate and Guanylate cyclase catalytic domain Trebr_1959 PF03023 Lipid II flippase MurJ Trebr_1960 PF01321 Creatinase/Prolidase N-terminal domain Trebr_1960 PF00557 Metallopeptidase family M24 Trebr_1963 PF02151 UvrB/uvrC motif Trebr_1963 PF01541 GIY-YIG catalytic domain Trebr_1963 PF08459 UvrC Helix-hairpin-helix N-terminal Trebr_1964 PF05193 Peptidase M16 inactive domain Trebr_1964 PF00675 Insulinase (Peptidase family M16) Trebr_1965 PF01138 3' exoribonuclease family, domain 1 Trebr_1965 PF00013 KH domain Trebr_1965 PF00575 S1 RNA binding domain Trebr_1965 PF03725 3' exoribonuclease family, domain 2 Trebr_1965 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Trebr_1966 PF00312 Ribosomal protein S15 Trebr_1968 PF01509 TruB family pseudouridylate synthase (N terminal domain) Trebr_1969 PF02033 Ribosome-binding factor A Trebr_1970 PF00009 Elongation factor Tu GTP binding domain Trebr_1970 PF11987 Translation-initiation factor 2 Trebr_1970 PF04760 Translation initiation factor IF-2, N-terminal region Trebr_1971 PF00575 S1 RNA binding domain Trebr_1971 PF08529 NusA N-terminal domain Trebr_1971 PF13184 NusA-like KH domain Trebr_1972 PF17384 RimP C-terminal SH3 domain Trebr_1972 PF02576 RimP N-terminal domain Trebr_1978 PF00872 Transposase, Mutator family Trebr_1986 PF14535 AMP-binding enzyme C-terminal domain Trebr_1986 PF00501 AMP-binding enzyme Trebr_1989 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Trebr_1989 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Trebr_1990 PF01048 Phosphorylase superfamily Trebr_1991 PF04073 Aminoacyl-tRNA editing domain Trebr_1993 PF13191 AAA ATPase domain Trebr_1993 PF00069 Protein kinase domain Trebr_2000 PF09383 NIL domain Trebr_2000 PF00005 ABC transporter Trebr_2011 PF00916 Sulfate permease family Trebr_2011 PF01740 STAS domain Trebr_2013 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2014 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2015 PF03061 Thioesterase superfamily Trebr_2017 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2018 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2019 PF01547 Bacterial extracellular solute-binding protein Trebr_2021 PF00480 ROK family Trebr_2021 PF01047 MarR family Trebr_2022 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Trebr_2023 PF01979 Amidohydrolase family Trebr_2024 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Trebr_2024 PF06165 Glycosyltransferase family 36 Trebr_2027 PF06826 Predicted Permease Membrane Region Trebr_2027 PF02080 TrkA-C domain Trebr_2028 PF00890 FAD binding domain Trebr_2028 PF02910 Fumarate reductase flavoprotein C-term Trebr_2030 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Trebr_2030 PF00175 Oxidoreductase NAD-binding domain Trebr_2034 PF01593 Flavin containing amine oxidoreductase Trebr_2037 PF00206 Lyase Trebr_2037 PF10415 Fumarase C C-terminus Trebr_2038 PF00056 lactate/malate dehydrogenase, NAD binding domain Trebr_2038 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Trebr_2040 PF01022 Bacterial regulatory protein, arsR family Trebr_2042 PF00860 Permease family Trebr_2044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_2044 PF00672 HAMP domain Trebr_2045 PF00180 Isocitrate/isopropylmalate dehydrogenase Trebr_2053 PF01501 Glycosyl transferase family 8 Trebr_2053 PF00535 Glycosyl transferase family 2 Trebr_2061 PF01042 Endoribonuclease L-PSP Trebr_2062 PF00294 pfkB family carbohydrate kinase Trebr_2063 PF00749 tRNA synthetases class I (E and Q), catalytic domain Trebr_2065 PF02653 Branched-chain amino acid transport system / permease component Trebr_2066 PF00005 ABC transporter Trebr_2068 PF00356 Bacterial regulatory proteins, lacI family Trebr_2069 PF00403 Heavy-metal-associated domain Trebr_2070 PF01022 Bacterial regulatory protein, arsR family Trebr_2072 PF00679 Elongation factor G C-terminus Trebr_2072 PF14492 Elongation Factor G, domain II Trebr_2072 PF03764 Elongation factor G, domain IV Trebr_2072 PF00009 Elongation factor Tu GTP binding domain Trebr_2072 PF03144 Elongation factor Tu domain 2 Trebr_2075 PF01121 Dephospho-CoA kinase Trebr_2076 PF01612 3'-5' exonuclease Trebr_2076 PF00476 DNA polymerase family A Trebr_2076 PF01367 5'-3' exonuclease, C-terminal SAM fold Trebr_2076 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Trebr_2083 PF00871 Acetokinase family Trebr_2084 PF00294 pfkB family carbohydrate kinase Trebr_2086 PF00486 Transcriptional regulatory protein, C terminal Trebr_2086 PF00072 Response regulator receiver domain Trebr_2087 PF00072 Response regulator receiver domain Trebr_2087 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Trebr_2087 PF01627 Hpt domain Trebr_2087 PF00512 His Kinase A (phospho-acceptor) domain Trebr_2087 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_2087 PF00672 HAMP domain Trebr_2090 PF01176 Translation initiation factor 1A / IF-1 Trebr_2091 PF00684 DnaJ central domain Trebr_2091 PF00226 DnaJ domain Trebr_2091 PF01556 DnaJ C terminal domain Trebr_2095 PF00092 von Willebrand factor type A domain Trebr_2097 PF01882 Protein of unknown function DUF58 Trebr_2098 PF17863 AAA lid domain Trebr_2098 PF07726 ATPase family associated with various cellular activities (AAA) Trebr_2102 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Trebr_2102 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Trebr_2105 PF01197 Ribosomal protein L31 Trebr_2106 PF07497 Rho termination factor, RNA-binding domain Trebr_2106 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Trebr_2106 PF07498 Rho termination factor, N-terminal domain Trebr_2109 PF01728 FtsJ-like methyltransferase Trebr_2109 PF18125 RlmM ferredoxin-like domain Trebr_2111 PF07859 alpha/beta hydrolase fold Trebr_2113 PF13291 ACT domain Trebr_2113 PF04607 Region found in RelA / SpoT proteins Trebr_2113 PF02824 TGS domain Trebr_2114 PF05175 Methyltransferase small domain Trebr_2114 PF17827 PrmC N-terminal domain Trebr_2115 PF00472 RF-1 domain Trebr_2115 PF03462 PCRF domain Trebr_2117 PF06100 MCRA family Trebr_2118 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Trebr_2122 PF01066 CDP-alcohol phosphatidyltransferase Trebr_2125 PF00293 NUDIX domain Trebr_2128 PF02229 Transcriptional Coactivator p15 (PC4) Trebr_2130 PF00717 Peptidase S24-like Trebr_2130 PF01726 LexA DNA binding domain Trebr_2131 PF00381 PTS HPr component phosphorylation site Trebr_2132 PF07475 HPr Serine kinase C-terminal domain Trebr_2132 PF02603 HPr Serine kinase N terminus Trebr_2134 PF01479 S4 domain Trebr_2134 PF00849 RNA pseudouridylate synthase Trebr_2135 PF00571 CBS domain Trebr_2135 PF01595 Cyclin M transmembrane N-terminal domain Trebr_2135 PF03471 Transporter associated domain Trebr_2136 PF01595 Cyclin M transmembrane N-terminal domain Trebr_2136 PF00571 CBS domain Trebr_2136 PF03471 Transporter associated domain Trebr_2138 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Trebr_2138 PF00586 AIR synthase related protein, N-terminal domain Trebr_2138 PF02769 AIR synthase related protein, C-terminal domain Trebr_2142 PF01037 Lrp/AsnC ligand binding domain Trebr_2143 PF00155 Aminotransferase class I and II Trebr_2145 PF00005 ABC transporter Trebr_2146 PF00293 NUDIX domain Trebr_2146 PF13344 Haloacid dehalogenase-like hydrolase Trebr_2147 PF01699 Sodium/calcium exchanger protein Trebr_2149 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Trebr_2150 PF00005 ABC transporter Trebr_2151 PF12704 MacB-like periplasmic core domain Trebr_2151 PF02687 FtsX-like permease family Trebr_2152 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Trebr_2152 PF12241 Trans-2-enoyl-CoA reductase catalytic region Trebr_2152 PF07055 Enoyl reductase FAD binding domain Trebr_2153 PF00109 Beta-ketoacyl synthase, N-terminal domain Trebr_2153 PF02801 Beta-ketoacyl synthase, C-terminal domain Trebr_2154 PF13193 AMP-binding enzyme C-terminal domain Trebr_2154 PF00501 AMP-binding enzyme Trebr_2155 PF00085 Thioredoxin Trebr_2161 PF01554 MatE Trebr_2164 PF03480 Bacterial extracellular solute-binding protein, family 7 Trebr_2166 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Trebr_2169 PF00005 ABC transporter Trebr_2173 PF09827 CRISPR associated protein Cas2 Trebr_2174 PF01867 CRISPR associated protein Cas1 Trebr_2187 PF14748 Pyrroline-5-carboxylate reductase dimerisation Trebr_2187 PF03807 NADP oxidoreductase coenzyme F420-dependent Trebr_2188 PF00696 Amino acid kinase family Trebr_2189 PF00171 Aldehyde dehydrogenase family Trebr_2191 PF01327 Polypeptide deformylase Trebr_2192 PF02911 Formyl transferase, C-terminal domain Trebr_2192 PF00551 Formyl transferase Trebr_2194 PF03553 Na+/H+ antiporter family Trebr_2195 PF02203 Tar ligand binding domain homologue Trebr_2195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_2195 PF00672 HAMP domain Trebr_2196 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Trebr_2196 PF08501 Shikimate dehydrogenase substrate binding domain Trebr_2197 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Trebr_2199 PF01926 50S ribosome-binding GTPase Trebr_2199 PF07650 KH domain Trebr_2200 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Trebr_2200 PF00128 Alpha amylase, catalytic domain Trebr_2201 PF00343 Carbohydrate phosphorylase Trebr_2202 PF00474 Sodium:solute symporter family Trebr_2203 PF00563 EAL domain Trebr_2203 PF03707 Bacterial signalling protein N terminal repeat Trebr_2203 PF00990 Diguanylate cyclase, GGDEF domain Trebr_2205 PF00933 Glycosyl hydrolase family 3 N terminal domain Trebr_2206 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trebr_2212 PF03773 Predicted permease Trebr_2214 PF12146 Serine aminopeptidase, S33 Trebr_2216 PF00266 Aminotransferase class-V Trebr_2217 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Trebr_2217 PF01842 ACT domain Trebr_2217 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trebr_2220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Trebr_2220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Trebr_2225 PF01370 NAD dependent epimerase/dehydratase family Trebr_2226 PF16363 GDP-mannose 4,6 dehydratase Trebr_2227 PF01370 NAD dependent epimerase/dehydratase family Trebr_2228 PF00535 Glycosyl transferase family 2 Trebr_2229 PF00535 Glycosyl transferase family 2 Trebr_2233 PF00872 Transposase, Mutator family Trebr_2238 PF02446 4-alpha-glucanotransferase Trebr_2240 PF00291 Pyridoxal-phosphate dependent enzyme Trebr_2240 PF14821 Threonine synthase N terminus Trebr_2242 PF07687 Peptidase dimerisation domain Trebr_2242 PF01546 Peptidase family M20/M25/M40 Trebr_2244 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Trebr_2250 PF00588 SpoU rRNA Methylase family Trebr_2251 PF02954 Bacterial regulatory protein, Fis family Trebr_2251 PF00158 Sigma-54 interaction domain Trebr_2251 PF13185 GAF domain Trebr_2253 PF04452 RNA methyltransferase Trebr_2254 PF03572 Peptidase family S41 Trebr_2254 PF13180 PDZ domain Trebr_2256 PF10609 NUBPL iron-transfer P-loop NTPase Trebr_2257 PF01790 Prolipoprotein diacylglyceryl transferase Trebr_2258 PF00456 Transketolase, thiamine diphosphate binding domain Trebr_2258 PF02779 Transketolase, pyrimidine binding domain Trebr_2259 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Trebr_2261 PF00011 Hsp20/alpha crystallin family Trebr_2262 PF00571 CBS domain Trebr_2262 PF00478 IMP dehydrogenase / GMP reductase domain Trebr_2263 PF00005 ABC transporter Trebr_2264 PF12399 Branched-chain amino acid ATP-binding cassette transporter Trebr_2264 PF00005 ABC transporter Trebr_2265 PF02653 Branched-chain amino acid transport system / permease component Trebr_2265 PF11862 Domain of unknown function (DUF3382) Trebr_2266 PF02653 Branched-chain amino acid transport system / permease component Trebr_2267 PF13458 Periplasmic binding protein Trebr_2269 PF01196 Ribosomal protein L17 Trebr_2270 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Trebr_2270 PF01000 RNA polymerase Rpb3/RpoA insert domain Trebr_2270 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Trebr_2271 PF00163 Ribosomal protein S4/S9 N-terminal domain Trebr_2271 PF01479 S4 domain Trebr_2272 PF00411 Ribosomal protein S11 Trebr_2273 PF00416 Ribosomal protein S13/S18 Trebr_2274 PF00444 Ribosomal protein L36 Trebr_2275 PF00344 SecY translocase Trebr_2276 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Trebr_2277 PF00327 Ribosomal protein L30p/L7e Trebr_2278 PF00333 Ribosomal protein S5, N-terminal domain Trebr_2278 PF03719 Ribosomal protein S5, C-terminal domain Trebr_2279 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Trebr_2280 PF00347 Ribosomal protein L6 Trebr_2281 PF00410 Ribosomal protein S8 Trebr_2282 PF00253 Ribosomal protein S14p/S29e Trebr_2283 PF00673 ribosomal L5P family C-terminus Trebr_2283 PF00281 Ribosomal protein L5 Trebr_2284 PF00467 KOW motif Trebr_2284 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Trebr_2285 PF00238 Ribosomal protein L14p/L23e Trebr_2286 PF00366 Ribosomal protein S17 Trebr_2287 PF00831 Ribosomal L29 protein Trebr_2288 PF00252 Ribosomal protein L16p/L10e Trebr_2289 PF07650 KH domain Trebr_2289 PF00189 Ribosomal protein S3, C-terminal domain Trebr_2290 PF00237 Ribosomal protein L22p/L17e Trebr_2291 PF00203 Ribosomal protein S19 Trebr_2292 PF03947 Ribosomal Proteins L2, C-terminal domain Trebr_2292 PF00181 Ribosomal Proteins L2, RNA binding domain Trebr_2293 PF00276 Ribosomal protein L23 Trebr_2294 PF00573 Ribosomal protein L4/L1 family Trebr_2295 PF00297 Ribosomal protein L3 Trebr_2296 PF00338 Ribosomal protein S10p/S20e Trebr_2297 PF03143 Elongation factor Tu C-terminal domain Trebr_2297 PF03144 Elongation factor Tu domain 2 Trebr_2297 PF00009 Elongation factor Tu GTP binding domain Trebr_2298 PF00177 Ribosomal protein S7p/S5e Trebr_2299 PF00164 Ribosomal protein S12/S23 Trebr_2300 PF04997 RNA polymerase Rpb1, domain 1 Trebr_2300 PF04983 RNA polymerase Rpb1, domain 3 Trebr_2300 PF00623 RNA polymerase Rpb1, domain 2 Trebr_2300 PF05000 RNA polymerase Rpb1, domain 4 Trebr_2300 PF04998 RNA polymerase Rpb1, domain 5 Trebr_2301 PF04560 RNA polymerase Rpb2, domain 7 Trebr_2301 PF04563 RNA polymerase beta subunit Trebr_2301 PF04561 RNA polymerase Rpb2, domain 2 Trebr_2301 PF04565 RNA polymerase Rpb2, domain 3 Trebr_2301 PF10385 RNA polymerase beta subunit external 1 domain Trebr_2301 PF00562 RNA polymerase Rpb2, domain 6 Trebr_2302 PF00542 Ribosomal protein L7/L12 C-terminal domain Trebr_2302 PF16320 Ribosomal protein L7/L12 dimerisation domain Trebr_2303 PF00466 Ribosomal protein L10 Trebr_2304 PF00687 Ribosomal protein L1p/L10e family Trebr_2305 PF00298 Ribosomal protein L11, RNA binding domain Trebr_2305 PF03946 Ribosomal protein L11, N-terminal domain Trebr_2306 PF00467 KOW motif Trebr_2306 PF02357 Transcription termination factor nusG Trebr_2307 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Trebr_2308 PF00471 Ribosomal protein L33 Trebr_2309 PF00132 Bacterial transferase hexapeptide (six repeats) Trebr_2315 PF00037 4Fe-4S binding domain Trebr_2315 PF11953 Domain of unknown function (DUF3470) Trebr_2316 PF17854 FtsK alpha domain Trebr_2316 PF09397 Ftsk gamma domain Trebr_2316 PF01580 FtsK/SpoIIIE family Trebr_2319 PF01915 Glycosyl hydrolase family 3 C-terminal domain Trebr_2319 PF00933 Glycosyl hydrolase family 3 N terminal domain Trebr_2319 PF14310 Fibronectin type III-like domain Trebr_2321 PF00578 AhpC/TSA family Trebr_2321 PF10417 C-terminal domain of 1-Cys peroxiredoxin Trebr_2322 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Trebr_2322 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Trebr_2324 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Trebr_2324 PF00970 Oxidoreductase FAD-binding domain Trebr_2324 PF00175 Oxidoreductase NAD-binding domain Trebr_2325 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trebr_2325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Trebr_2326 PF00501 AMP-binding enzyme Trebr_2327 PF01409 tRNA synthetases class II core domain (F) Trebr_2331 PF01590 GAF domain Trebr_2331 PF00990 Diguanylate cyclase, GGDEF domain Trebr_2331 PF00360 Phytochrome region Trebr_2331 PF00563 EAL domain Trebr_2333 PF00211 Adenylate and Guanylate cyclase catalytic domain Trebr_2333 PF00072 Response regulator receiver domain Trebr_2339 PF01207 Dihydrouridine synthase (Dus) Trebr_2340 PF01026 TatD related DNase Trebr_2341 PF04225 Opacity-associated protein A LysM-like domain Trebr_2341 PF01551 Peptidase family M23 Trebr_2344 PF04468 PSP1 C-terminal conserved region Trebr_2347 PF01554 MatE Trebr_2348 PF01636 Phosphotransferase enzyme family Trebr_2349 PF02311 AraC-like ligand binding domain Trebr_2349 PF12833 Helix-turn-helix domain Trebr_2351 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2352 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2353 PF17385 Lacto-N-biose phosphorylase central domain Trebr_2353 PF17386 Lacto-N-biose phosphorylase C-terminal domain Trebr_2353 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain Trebr_2354 PF13186 Iron-sulfur cluster-binding domain Trebr_2354 PF04055 Radical SAM superfamily Trebr_2355 PF16347 Domain of unknown function (DUF4976) Trebr_2355 PF00884 Sulfatase Trebr_2356 PF02073 Thermophilic metalloprotease (M29) Trebr_2359 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Trebr_2359 PF01926 50S ribosome-binding GTPase Trebr_2360 PF02896 PEP-utilising enzyme, TIM barrel domain Trebr_2360 PF00391 PEP-utilising enzyme, mobile domain Trebr_2360 PF05524 PEP-utilising enzyme, N-terminal Trebr_2361 PF01502 Phosphoribosyl-AMP cyclohydrolase Trebr_2361 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Trebr_2362 PF00815 Histidinol dehydrogenase Trebr_2364 PF01594 AI-2E family transporter Trebr_2365 PF01256 Carbohydrate kinase Trebr_2365 PF03853 YjeF-related protein N-terminus Trebr_2366 PF02664 S-Ribosylhomocysteinase (LuxS) Trebr_2367 PF10509 Galactokinase galactose-binding signature Trebr_2367 PF08544 GHMP kinases C terminal Trebr_2367 PF00288 GHMP kinases N terminal domain Trebr_2368 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Trebr_2368 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Trebr_2369 PF00293 NUDIX domain Trebr_2370 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Trebr_2370 PF10371 Domain of unknown function Trebr_2370 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Trebr_2370 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Trebr_2370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Trebr_2371 PF01734 Patatin-like phospholipase Trebr_2372 PF03459 TOBE domain Trebr_2372 PF00005 ABC transporter Trebr_2374 PF10460 Peptidase M30 Trebr_2375 PF04452 RNA methyltransferase Trebr_2379 PF02527 rRNA small subunit methyltransferase G Trebr_2381 PF00012 Hsp70 protein Trebr_2383 PF00211 Adenylate and Guanylate cyclase catalytic domain Trebr_2383 PF02743 Cache domain Trebr_2383 PF00672 HAMP domain Trebr_2384 PF01435 Peptidase family M48 Trebr_2388 PF00365 Phosphofructokinase Trebr_2389 PF01979 Amidohydrolase family Trebr_2391 PF06153 Cyclic-di-AMP receptor Trebr_2399 PF00440 Bacterial regulatory proteins, tetR family Trebr_2399 PF16295 Tetracyclin repressor-like, C-terminal domain Trebr_2400 PF09371 Tex-like protein N-terminal domain Trebr_2400 PF00575 S1 RNA binding domain Trebr_2400 PF16921 Tex protein YqgF-like domain Trebr_2400 PF17674 HHH domain Trebr_2411 PF00171 Aldehyde dehydrogenase family Trebr_2413 PF00669 Bacterial flagellin N-terminal helical region Trebr_2413 PF00700 Bacterial flagellin C-terminal helical region Trebr_2414 PF13662 Toprim domain Trebr_2414 PF02132 RecR protein Trebr_2415 PF02575 YbaB/EbfC DNA-binding family Trebr_2416 PF12169 DNA polymerase III subunits gamma and tau domain III Trebr_2418 PF08482 ATP-dependent helicase C-terminal Trebr_2418 PF00271 Helicase conserved C-terminal domain Trebr_2418 PF04408 Helicase associated domain (HA2) Trebr_2418 PF00270 DEAD/DEAH box helicase Trebr_2419 PF00672 HAMP domain Trebr_2419 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Trebr_2419 PF02203 Tar ligand binding domain homologue Trebr_2420 PF03006 Haemolysin-III related Trebr_2421 PF08032 RNA 2'-O ribose methyltransferase substrate binding Trebr_2421 PF00588 SpoU rRNA Methylase family Trebr_2422 PF02810 SEC-C motif Trebr_2427 PF07992 Pyridine nucleotide-disulphide oxidoreductase Trebr_2428 PF02386 Cation transport protein Trebr_2430 PF00183 Hsp90 protein Trebr_2432 PF00491 Arginase family Trebr_2434 PF02872 5'-nucleotidase, C-terminal domain Trebr_2434 PF00149 Calcineurin-like phosphoesterase Trebr_2436 PF01170 Putative RNA methylase family UPF0020 Trebr_2436 PF02926 THUMP domain Trebr_2441 PF01420 Type I restriction modification DNA specificity domain Trebr_2442 PF02384 N-6 DNA Methylase Trebr_2442 PF12161 HsdM N-terminal domain Trebr_2443 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Trebr_2443 PF00271 Helicase conserved C-terminal domain Trebr_2443 PF08463 EcoEI R protein C-terminal Trebr_2443 PF04851 Type III restriction enzyme, res subunit Trebr_2453 PF02195 ParB-like nuclease domain Trebr_2458 PF00176 SNF2 family N-terminal domain Trebr_2458 PF00271 Helicase conserved C-terminal domain Trebr_2459 PF00270 DEAD/DEAH box helicase Trebr_2459 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Trebr_2459 PF17191 RecG wedge domain Trebr_2462 PF02796 Helix-turn-helix domain of resolvase Trebr_2462 PF00239 Resolvase, N terminal domain Trebr_2465 PF00593 TonB dependent receptor Trebr_2465 PF07715 TonB-dependent Receptor Plug Domain Trebr_2466 PF02607 B12 binding domain Trebr_2466 PF02310 B12 binding domain Trebr_2466 PF02574 Homocysteine S-methyltransferase Trebr_2466 PF02965 Vitamin B12 dependent methionine synthase, activation domain Trebr_2466 PF00809 Pterin binding enzyme Trebr_2469 PF00535 Glycosyl transferase family 2 Trebr_2472 PF13411 MerR HTH family regulatory protein Trebr_2473 PF04304 Protein of unknown function (DUF454) Trebr_2475 PF00005 ABC transporter Trebr_2477 PF01497 Periplasmic binding protein Trebr_2478 PF01032 FecCD transport family Trebr_2479 PF00005 ABC transporter Trebr_2482 PF00072 Response regulator receiver domain Trebr_2482 PF12833 Helix-turn-helix domain Trebr_2483 PF00672 HAMP domain Trebr_2483 PF02743 Cache domain Trebr_2483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_2483 PF06580 Histidine kinase Trebr_2485 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2486 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2488 PF17189 Glycosyl hydrolase family 30 beta sandwich domain Trebr_2489 PF04055 Radical SAM superfamily Trebr_2489 PF08497 Radical SAM N-terminal Trebr_2489 PF11842 Domain of unknown function (DUF3362) Trebr_2492 PF13091 PLD-like domain Trebr_2495 PF01252 Signal peptidase (SPase) II Trebr_2496 PF01784 NIF3 (NGG1p interacting factor 3) Trebr_2498 PF08668 HDOD domain Trebr_2499 PF00588 SpoU rRNA Methylase family Trebr_2502 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Trebr_2509 PF06832 Penicillin-Binding Protein C-terminus Family Trebr_2509 PF00912 Transglycosylase Trebr_2509 PF00905 Penicillin binding protein transpeptidase domain Trebr_2510 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Trebr_2510 PF17962 Bacterial macroglobulin domain 6 Trebr_2510 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Trebr_2510 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Trebr_2510 PF00207 Alpha-2-macroglobulin family Trebr_2510 PF07703 Alpha-2-macroglobulin bait region domain Trebr_2510 PF01835 MG2 domain Trebr_2511 PF02673 Bacitracin resistance protein BacA Trebr_2514 PF03063 Prismane/CO dehydrogenase family Trebr_2517 PF00156 Phosphoribosyl transferase domain Trebr_2519 PF00365 Phosphofructokinase Trebr_2520 PF08279 HTH domain Trebr_2520 PF03099 Biotin/lipoate A/B protein ligase family Trebr_2520 PF02237 Biotin protein ligase C terminal domain Trebr_2522 PF07556 Protein of unknown function (DUF1538) Trebr_2523 PF01048 Phosphorylase superfamily Trebr_2525 PF04298 Putative neutral zinc metallopeptidase Trebr_2527 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2528 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2529 PF13419 Haloacid dehalogenase-like hydrolase Trebr_2531 PF12833 Helix-turn-helix domain Trebr_2531 PF00072 Response regulator receiver domain Trebr_2532 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_2532 PF02743 Cache domain Trebr_2532 PF00672 HAMP domain Trebr_2532 PF06580 Histidine kinase Trebr_2536 PF00331 Glycosyl hydrolase family 10 Trebr_2536 PF07859 alpha/beta hydrolase fold Trebr_2537 PF01966 HD domain Trebr_2540 PF00899 ThiF family Trebr_2545 PF00480 ROK family Trebr_2546 PF03932 CutC family Trebr_2547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Trebr_2547 PF03466 LysR substrate binding domain Trebr_2549 PF00294 pfkB family carbohydrate kinase Trebr_2555 PF00544 Pectate lyase Trebr_2560 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Trebr_2560 PF03484 tRNA synthetase B5 domain Trebr_2570 PF00005 ABC transporter Trebr_2570 PF02687 FtsX-like permease family Trebr_2570 PF12704 MacB-like periplasmic core domain Trebr_2577 PF07690 Major Facilitator Superfamily Trebr_2578 PF00356 Bacterial regulatory proteins, lacI family Trebr_2581 PF02677 Epoxyqueuosine reductase QueH Trebr_2582 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2583 PF00528 Binding-protein-dependent transport system inner membrane component Trebr_2585 PF00583 Acetyltransferase (GNAT) family Trebr_2585 PF00696 Amino acid kinase family Trebr_2586 PF03989 DNA gyrase C-terminal domain, beta-propeller Trebr_2586 PF00521 DNA gyrase/topoisomerase IV, subunit A Trebr_2587 PF00986 DNA gyrase B subunit, carboxyl terminus Trebr_2587 PF00204 DNA gyrase B Trebr_2587 PF01751 Toprim domain Trebr_2587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trebr_R0022 PF02915 Rubrerythrin