Trebr_0001 SM00382 ATPases associated with a variety of cellular activities Trebr_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Trebr_0002 SM00480 DNA polymerase III beta subunit Trebr_0007 SM01234 Trebr_0007 Trebr_0009 SM00393 Putative single-stranded nucleic acids-binding domain Trebr_0009 SM01245 Trebr_0009 Trebr_0015 SM01324 Trebr_0015 Trebr_0018 SM00858 Trebr_0018 Trebr_0020 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0028 SM00710 Parallel beta-helix repeats Trebr_0031 SM00967 RNA 2'-O ribose methyltransferase substrate binding Trebr_0032 SM00986 Uracil DNA glycosylase superfamily Trebr_0032 SM00987 UreE urease accessory protein, C-terminal domain Trebr_0033 SM00014 Acid phosphatase homologues Trebr_0046 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0049 SM00530 Helix-turn-helix XRE-family like proteins Trebr_0052 SM01007 Class II Aldolase and Adducin N-terminal domain Trebr_0057 SM00244 prohibitin homologues Trebr_0066 SM00354 helix_turn _helix lactose operon repressor Trebr_0067 SM00382 ATPases associated with a variety of cellular activities Trebr_0070 SM01133 Trebr_0070 Trebr_0087 SM00382 ATPases associated with a variety of cellular activities Trebr_0096 SM00829 Enoylreductase Trebr_0097 SM00829 Enoylreductase Trebr_0098 SM00345 helix_turn_helix gluconate operon transcriptional repressor Trebr_0098 SM00895 Trebr_0098 Trebr_0100 SM00260 Two component signalling adaptor domain Trebr_0101 SM00260 Two component signalling adaptor domain Trebr_0102 SM00448 cheY-homologous receiver domain Trebr_0103 SM00448 cheY-homologous receiver domain Trebr_0104 SM00138 Methyltransferase, chemotaxis proteins Trebr_0105 SM00073 Histidine Phosphotransfer domain Trebr_0105 SM00260 Two component signalling adaptor domain Trebr_0105 SM00387 Histidine kinase-like ATPases Trebr_0105 SM01231 Trebr_0105 Trebr_0107 SM00260 Two component signalling adaptor domain Trebr_0112 SM00530 Helix-turn-helix XRE-family like proteins Trebr_0116 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Trebr_0116 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0119 SM01038 Beta galactosidase small chain Trebr_0123 SM00421 helix_turn_helix, Lux Regulon Trebr_0123 SM00448 cheY-homologous receiver domain Trebr_0124 SM00387 Histidine kinase-like ATPases Trebr_0128 SM01007 Class II Aldolase and Adducin N-terminal domain Trebr_0129 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0132 SM00382 ATPases associated with a variety of cellular activities Trebr_0134 SM00354 helix_turn _helix lactose operon repressor Trebr_0135 SM00422 helix_turn_helix, mercury resistance Trebr_0136 SM00861 Transketolase, pyrimidine binding domain Trebr_0142 SM00316 Ribosomal protein S1-like RNA-binding domain Trebr_0143 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0143 SM00871 Bacterial transcription activator, effector binding domain Trebr_0147 SM00966 SpoVT / AbrB like domain Trebr_0163 SM00387 Histidine kinase-like ATPases Trebr_0163 SM00388 His Kinase A (phosphoacceptor) domain Trebr_0165 SM00448 cheY-homologous receiver domain Trebr_0165 SM00862 Transcriptional regulatory protein, C terminal Trebr_0167 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0167 SM00387 Histidine kinase-like ATPases Trebr_0167 SM00388 His Kinase A (phosphoacceptor) domain Trebr_0168 SM00448 cheY-homologous receiver domain Trebr_0168 SM00862 Transcriptional regulatory protein, C terminal Trebr_0183 SM00028 Tetratricopeptide repeats Trebr_0184 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain Trebr_0193 SM00354 helix_turn _helix lactose operon repressor Trebr_0194 SM00448 cheY-homologous receiver domain Trebr_0196 SM00387 Histidine kinase-like ATPases Trebr_0201 SM00530 Helix-turn-helix XRE-family like proteins Trebr_0223 SM00382 ATPases associated with a variety of cellular activities Trebr_0224 SM00382 ATPases associated with a variety of cellular activities Trebr_0227 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0233 SM00267 diguanylate cyclase Trebr_0235 SM00382 ATPases associated with a variety of cellular activities Trebr_0236 SM00966 SpoVT / AbrB like domain Trebr_0240 SM01061 CAT RNA binding domain Trebr_0247 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Trebr_0248 SM00851 MGS-like domain Trebr_0248 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Trebr_0252 SM00267 diguanylate cyclase Trebr_0254 SM00014 Acid phosphatase homologues Trebr_0256 SM00345 helix_turn_helix gluconate operon transcriptional repressor Trebr_0258 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0262 SM00354 helix_turn _helix lactose operon repressor Trebr_0264 SM00382 ATPases associated with a variety of cellular activities Trebr_0268 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0268 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0276 SM00909 Sporulation and spore germination Trebr_0291 SM00984 UDP binding domain Trebr_0309 SM00845 GatB domain Trebr_0309 SM00870 Trebr_0309 Trebr_0311 SM00028 Tetratricopeptide repeats Trebr_0318 SM00116 Domain in cystathionine beta-synthase and other proteins. Trebr_0320 SM00481 DNA polymerase alpha chain like domain Trebr_0321 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0321 SM00448 cheY-homologous receiver domain Trebr_0322 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0333 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Trebr_0334 SM00902 Iron hydrogenase small subunit Trebr_0334 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Trebr_0335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0335 SM01049 Trebr_0335 Trebr_0338 SM00382 ATPases associated with a variety of cellular activities Trebr_0342 SM00862 Transcriptional regulatory protein, C terminal Trebr_0344 SM00470 ParB-like nuclease domain Trebr_0345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0347 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Trebr_0347 SM00478 endonuclease III Trebr_0347 SM00525 Trebr_0347 Trebr_0351 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Trebr_0354 SM00028 Tetratricopeptide repeats Trebr_0357 SM00382 ATPases associated with a variety of cellular activities Trebr_0360 SM00530 Helix-turn-helix XRE-family like proteins Trebr_0363 SM00100 Cyclic nucleotide-monophosphate binding domain Trebr_0364 SM00487 DEAD-like helicases superfamily Trebr_0364 SM00490 helicase superfamily c-terminal domain Trebr_0375 SM00470 ParB-like nuclease domain Trebr_0386 SM01060 Trebr_0386 Trebr_0389 SM00450 Rhodanese Homology Domain Trebr_0393 SM00450 Rhodanese Homology Domain Trebr_0394 SM00419 helix_turn_helix, cAMP Regulatory protein Trebr_0395 SM00267 diguanylate cyclase Trebr_0396 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0396 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_0398 SM01230 Trebr_0398 Trebr_0399 SM00938 Nitrogen regulatory protein P-II Trebr_0400 SM00052 Putative diguanylate phosphodiesterase Trebr_0400 SM00267 diguanylate cyclase Trebr_0401 SM01209 Trebr_0401 Trebr_0401 SM01210 Trebr_0401 Trebr_0407 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_0410 SM01040 BRO family, N-terminal domain Trebr_0418 SM00382 ATPases associated with a variety of cellular activities Trebr_0421 SM00354 helix_turn _helix lactose operon repressor Trebr_0433 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Trebr_0435 SM01144 Trebr_0435 Trebr_0447 SM00530 Helix-turn-helix XRE-family like proteins Trebr_0452 SM00354 helix_turn _helix lactose operon repressor Trebr_0453 SM00481 DNA polymerase alpha chain like domain Trebr_0454 SM00100 Cyclic nucleotide-monophosphate binding domain Trebr_0455 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0456 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0456 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0457 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0459 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_0461 SM00382 ATPases associated with a variety of cellular activities Trebr_0465 SM00900 Trebr_0465 Trebr_0466 SM00354 helix_turn _helix lactose operon repressor Trebr_0471 SM00382 ATPases associated with a variety of cellular activities Trebr_0473 SM00382 ATPases associated with a variety of cellular activities Trebr_0474 SM00636 Trebr_0474 Trebr_0478 SM01192 Trebr_0478 Trebr_0478 SM01193 Trebr_0478 Trebr_0479 SM00563 Phosphate acyltransferases Trebr_0486 SM00849 Metallo-beta-lactamase superfamily Trebr_0486 SM01027 Beta-Casp domain Trebr_0496 SM01068 Putative carbohydrate binding domain Trebr_0499 SM00382 ATPases associated with a variety of cellular activities Trebr_0502 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_0505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0508 SM00382 ATPases associated with a variety of cellular activities Trebr_0508 SM01086 C-terminal, D2-small domain, of ClpB protein Trebr_0513 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Trebr_0526 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_0530 SM00387 Histidine kinase-like ATPases Trebr_0532 SM00421 helix_turn_helix, Lux Regulon Trebr_0532 SM00448 cheY-homologous receiver domain Trebr_0535 SM00331 Sigma factor PP2C-like phosphatases Trebr_0538 SM00382 ATPases associated with a variety of cellular activities Trebr_0541 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0541 SM00448 cheY-homologous receiver domain Trebr_0542 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0544 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0544 SM00871 Bacterial transcription activator, effector binding domain Trebr_0546 SM00382 ATPases associated with a variety of cellular activities Trebr_0549 SM00798 AICARFT/IMPCHase bienzyme Trebr_0549 SM00851 MGS-like domain Trebr_0552 SM00382 ATPases associated with a variety of cellular activities Trebr_0563 SM00116 Domain in cystathionine beta-synthase and other proteins. Trebr_0563 SM01131 Trebr_0563 Trebr_0569 SM00347 helix_turn_helix multiple antibiotic resistance protein Trebr_0571 SM00382 ATPases associated with a variety of cellular activities Trebr_0575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0577 SM00487 DEAD-like helicases superfamily Trebr_0577 SM00490 helicase superfamily c-terminal domain Trebr_0581 SM00028 Tetratricopeptide repeats Trebr_0588 SM01228 Trebr_0588 Trebr_0591 SM00487 DEAD-like helicases superfamily Trebr_0591 SM00490 helicase superfamily c-terminal domain Trebr_0594 SM00052 Putative diguanylate phosphodiesterase Trebr_0594 SM00267 diguanylate cyclase Trebr_0598 SM00382 ATPases associated with a variety of cellular activities Trebr_0602 SM00642 Alpha-amylase domain Trebr_0603 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0609 SM00849 Metallo-beta-lactamase superfamily Trebr_0614 SM00382 ATPases associated with a variety of cellular activities Trebr_0619 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Trebr_0621 SM00267 diguanylate cyclase Trebr_0623 SM00382 ATPases associated with a variety of cellular activities Trebr_0628 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_0629 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_0637 SM00448 cheY-homologous receiver domain Trebr_0638 SM00331 Sigma factor PP2C-like phosphatases Trebr_0640 SM00331 Sigma factor PP2C-like phosphatases Trebr_0646 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0647 SM01130 Trebr_0647 Trebr_0648 SM00859 Semialdehyde dehydrogenase, NAD binding domain Trebr_0652 SM01001 AIR carboxylase Trebr_0660 SM00420 helix_turn_helix, Deoxyribose operon repressor Trebr_0660 SM01134 Trebr_0660 Trebr_0662 SM00876 Biotin and Thiamin Synthesis associated domain Trebr_0663 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_0665 SM00345 helix_turn_helix gluconate operon transcriptional repressor Trebr_0666 SM00382 ATPases associated with a variety of cellular activities Trebr_0684 SM00642 Alpha-amylase domain Trebr_0685 SM00642 Alpha-amylase domain Trebr_0689 SM00642 Alpha-amylase domain Trebr_0690 SM01230 Trebr_0690 Trebr_0691 SM01012 Trebr_0691 Trebr_0695 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Trebr_0696 SM00822 Trebr_0696 Trebr_0697 SM00825 Beta-ketoacyl synthase Trebr_0703 SM00382 ATPases associated with a variety of cellular activities Trebr_0706 SM00382 ATPases associated with a variety of cellular activities Trebr_0710 SM00849 Metallo-beta-lactamase superfamily Trebr_0712 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0713 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0713 SM00448 cheY-homologous receiver domain Trebr_0718 SM00322 K homology RNA-binding domain Trebr_0718 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_0719 SM00138 Methyltransferase, chemotaxis proteins Trebr_0720 SM00448 cheY-homologous receiver domain Trebr_0722 SM00028 Tetratricopeptide repeats Trebr_0725 SM00257 Lysin motif Trebr_0726 SM00530 Helix-turn-helix XRE-family like proteins Trebr_0730 SM00530 Helix-turn-helix XRE-family like proteins Trebr_0755 SM00062 Bacterial periplasmic substrate-binding proteins Trebr_0762 SM00073 Histidine Phosphotransfer domain Trebr_0762 SM00260 Two component signalling adaptor domain Trebr_0762 SM00387 Histidine kinase-like ATPases Trebr_0762 SM01231 Trebr_0762 Trebr_0763 SM00138 Methyltransferase, chemotaxis proteins Trebr_0763 SM00260 Two component signalling adaptor domain Trebr_0765 SM00448 cheY-homologous receiver domain Trebr_0767 SM00841 Elongation factor P, C-terminal Trebr_0767 SM01185 Trebr_0767 Trebr_0771 SM00267 diguanylate cyclase Trebr_0780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_0785 SM00155 Phospholipase D. Active site motifs. Trebr_0789 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Trebr_0792 SM00028 Tetratricopeptide repeats Trebr_0793 SM00883 Chaperonin 10 Kd subunit Trebr_0795 SM00487 DEAD-like helicases superfamily Trebr_0795 SM00490 helicase superfamily c-terminal domain Trebr_0797 SM00481 DNA polymerase alpha chain like domain Trebr_0798 SM00382 ATPases associated with a variety of cellular activities Trebr_0798 SM00930 Trebr_0798 Trebr_0802 SM00387 Histidine kinase-like ATPases Trebr_0802 SM00388 His Kinase A (phosphoacceptor) domain Trebr_0803 SM00448 cheY-homologous receiver domain Trebr_0803 SM00862 Transcriptional regulatory protein, C terminal Trebr_0807 SM00530 Helix-turn-helix XRE-family like proteins Trebr_0824 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Trebr_0829 SM01323 Trebr_0829 Trebr_0836 SM00917 LeuA allosteric (dimerisation) domain Trebr_0843 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0844 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_0845 SM00382 ATPases associated with a variety of cellular activities Trebr_0855 SM00900 Trebr_0855 Trebr_0860 SM00052 Putative diguanylate phosphodiesterase Trebr_0862 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0866 SM00257 Lysin motif Trebr_0869 SM00028 Tetratricopeptide repeats Trebr_0872 SM00382 ATPases associated with a variety of cellular activities Trebr_0878 SM00382 ATPases associated with a variety of cellular activities Trebr_0881 SM00433 TopoisomeraseII Trebr_0882 SM00434 DNA Topoisomerase IV Trebr_0889 SM00342 helix_turn_helix, arabinose operon control protein Trebr_0889 SM00871 Bacterial transcription activator, effector binding domain Trebr_0890 SM00382 ATPases associated with a variety of cellular activities Trebr_0890 SM00962 SRP54-type protein, GTPase domain Trebr_0890 SM00963 SRP54-type protein, helical bundle domain Trebr_0894 SM00267 diguanylate cyclase Trebr_0898 SM00836 DALR anticodon binding domain Trebr_0898 SM01016 Arginyl tRNA synthetase N terminal dom Trebr_0900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_0900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_0915 SM00849 Metallo-beta-lactamase superfamily Trebr_0919 SM00448 cheY-homologous receiver domain Trebr_0919 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_0920 SM01329 Trebr_0920 Trebr_0928 SM00382 ATPases associated with a variety of cellular activities Trebr_0934 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trebr_0934 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_0952 SM00842 Cell division protein FtsA Trebr_0953 SM00864 Tubulin/FtsZ family, GTPase domain Trebr_0953 SM00865 Tubulin/FtsZ family, C-terminal domain Trebr_0955 SM00028 Tetratricopeptide repeats Trebr_0957 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Trebr_0957 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Trebr_0957 SM00493 Trebr_0957 Trebr_0960 SM00382 ATPases associated with a variety of cellular activities Trebr_0960 SM01086 C-terminal, D2-small domain, of ClpB protein Trebr_0967 SM00382 ATPases associated with a variety of cellular activities Trebr_0969 SM00382 ATPases associated with a variety of cellular activities Trebr_0971 SM00981 Trebr_0971 Trebr_0976 SM00529 Helix-turn-helix diphteria tox regulatory element Trebr_0979 SM00062 Bacterial periplasmic substrate-binding proteins Trebr_0981 SM00382 ATPases associated with a variety of cellular activities Trebr_0983 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_0985 SM01091 Transporter associated domain Trebr_0986 SM00028 Tetratricopeptide repeats Trebr_0991 SM00382 ATPases associated with a variety of cellular activities Trebr_0991 SM00962 SRP54-type protein, GTPase domain Trebr_0994 SM00382 ATPases associated with a variety of cellular activities Trebr_0998 SM00382 ATPases associated with a variety of cellular activities Trebr_0998 SM01086 C-terminal, D2-small domain, of ClpB protein Trebr_1002 SM00448 cheY-homologous receiver domain Trebr_1002 SM00862 Transcriptional regulatory protein, C terminal Trebr_1003 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_1003 SM00387 Histidine kinase-like ATPases Trebr_1003 SM00388 His Kinase A (phosphoacceptor) domain Trebr_1011 SM00342 helix_turn_helix, arabinose operon control protein Trebr_1019 SM00857 Resolvase, N terminal domain Trebr_1020 SM00287 Bacterial SH3 domain homologues Trebr_1028 SM00244 prohibitin homologues Trebr_1029 SM00244 prohibitin homologues Trebr_1031 SM00382 ATPases associated with a variety of cellular activities Trebr_1032 SM00382 ATPases associated with a variety of cellular activities Trebr_1034 SM00422 helix_turn_helix, mercury resistance Trebr_1036 SM00530 Helix-turn-helix XRE-family like proteins Trebr_1043 SM00530 Helix-turn-helix XRE-family like proteins Trebr_1049 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_1058 SM00518 AP endonuclease family 2 Trebr_1063 SM00382 ATPases associated with a variety of cellular activities Trebr_1076 SM00100 Cyclic nucleotide-monophosphate binding domain Trebr_1077 SM00562 Trebr_1077 Trebr_1082 SM00354 helix_turn _helix lactose operon repressor Trebr_1084 SM00382 ATPases associated with a variety of cellular activities Trebr_1087 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Trebr_1097 SM00636 Trebr_1097 Trebr_1099 SM00382 ATPases associated with a variety of cellular activities Trebr_1100 SM00477 DNA/RNA non-specific endonuclease Trebr_1100 SM00892 DNA/RNA non-specific endonuclease Trebr_1103 SM00845 GatB domain Trebr_1107 SM00052 Putative diguanylate phosphodiesterase Trebr_1108 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_1111 SM01400 Trebr_1111 Trebr_1114 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trebr_1115 SM00487 DEAD-like helicases superfamily Trebr_1115 SM00490 helicase superfamily c-terminal domain Trebr_1142 SM00382 ATPases associated with a variety of cellular activities Trebr_1142 SM00962 SRP54-type protein, GTPase domain Trebr_1146 SM01245 Trebr_1146 Trebr_1150 SM00248 ankyrin repeats Trebr_1154 SM00091 PAS domain Trebr_1154 SM00387 Histidine kinase-like ATPases Trebr_1154 SM00388 His Kinase A (phosphoacceptor) domain Trebr_1155 SM00382 ATPases associated with a variety of cellular activities Trebr_1155 SM00448 cheY-homologous receiver domain Trebr_1156 SM00347 helix_turn_helix multiple antibiotic resistance protein Trebr_1159 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_1161 SM01409 Trebr_1161 Trebr_1163 SM00861 Transketolase, pyrimidine binding domain Trebr_1170 SM00487 DEAD-like helicases superfamily Trebr_1170 SM00490 helicase superfamily c-terminal domain Trebr_1171 SM00986 Uracil DNA glycosylase superfamily Trebr_1171 SM00987 UreE urease accessory protein, C-terminal domain Trebr_1178 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_1199 SM00382 ATPases associated with a variety of cellular activities Trebr_1204 SM00028 Tetratricopeptide repeats Trebr_1211 SM00292 breast cancer carboxy-terminal domain Trebr_1211 SM00532 Ligase N family Trebr_1215 SM00899 Trebr_1215 Trebr_1216 SM00899 Trebr_1216 Trebr_1227 SM00382 ATPases associated with a variety of cellular activities Trebr_1228 SM00342 helix_turn_helix, arabinose operon control protein Trebr_1228 SM00448 cheY-homologous receiver domain Trebr_1229 SM00387 Histidine kinase-like ATPases Trebr_1231 SM00382 ATPases associated with a variety of cellular activities Trebr_1248 SM00382 ATPases associated with a variety of cellular activities Trebr_1256 SM00567 E-Z type HEAT repeats Trebr_1257 SM00260 Two component signalling adaptor domain Trebr_1260 SM00382 ATPases associated with a variety of cellular activities Trebr_1263 SM00382 ATPases associated with a variety of cellular activities Trebr_1266 SM00382 ATPases associated with a variety of cellular activities Trebr_1267 SM00955 Trebr_1267 Trebr_1273 SM01324 Trebr_1273 Trebr_1286 SM00487 DEAD-like helicases superfamily Trebr_1286 SM00490 helicase superfamily c-terminal domain Trebr_1287 SM00382 ATPases associated with a variety of cellular activities Trebr_1288 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_1290 SM00849 Metallo-beta-lactamase superfamily Trebr_1291 SM00382 ATPases associated with a variety of cellular activities Trebr_1299 SM00650 Ribosomal RNA adenine dimethylases Trebr_1306 SM00382 ATPases associated with a variety of cellular activities Trebr_1308 SM00957 SecA DEAD-like domain Trebr_1308 SM00958 SecA preprotein cross-linking domain Trebr_1316 SM00382 ATPases associated with a variety of cellular activities Trebr_1347 SM01005 Alanine racemase, C-terminal domain Trebr_1349 SM00834 Putative regulatory protein Trebr_1353 SM00487 DEAD-like helicases superfamily Trebr_1353 SM00490 helicase superfamily c-terminal domain Trebr_1353 SM00982 Trebr_1353 Trebr_1353 SM01058 CarD-like/TRCF domain Trebr_1360 SM00028 Tetratricopeptide repeats Trebr_1363 SM00400 zinc finger Trebr_1363 SM00493 Trebr_1363 Trebr_1366 SM00849 Metallo-beta-lactamase superfamily Trebr_1386 SM00363 S4 RNA-binding domain Trebr_1392 SM00028 Tetratricopeptide repeats Trebr_1400 SM00530 Helix-turn-helix XRE-family like proteins Trebr_1402 SM00854 Bacterial capsule synthesis protein PGA_cap Trebr_1403 SM00487 DEAD-like helicases superfamily Trebr_1403 SM00490 helicase superfamily c-terminal domain Trebr_1403 SM00847 Helicase associated domain (HA2) Add an annotation Trebr_1406 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_1409 SM00060 Fibronectin type 3 domain Trebr_1410 SM00060 Fibronectin type 3 domain Trebr_1413 SM00358 Double-stranded RNA binding motif Trebr_1413 SM00535 Ribonuclease III family Trebr_1426 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trebr_1428 SM00382 ATPases associated with a variety of cellular activities Trebr_1437 SM00331 Sigma factor PP2C-like phosphatases Trebr_1438 SM00331 Sigma factor PP2C-like phosphatases Trebr_1444 SM01130 Trebr_1444 Trebr_1448 SM00345 helix_turn_helix gluconate operon transcriptional repressor Trebr_1448 SM00895 Trebr_1448 Trebr_1449 SM00838 Elongation factor G C-terminus Trebr_1449 SM00889 Elongation factor G, domain IV Trebr_1450 SM00871 Bacterial transcription activator, effector binding domain Trebr_1451 SM00382 ATPases associated with a variety of cellular activities Trebr_1452 SM00382 ATPases associated with a variety of cellular activities Trebr_1453 SM00342 helix_turn_helix, arabinose operon control protein Trebr_1457 SM00028 Tetratricopeptide repeats Trebr_1460 SM00100 Cyclic nucleotide-monophosphate binding domain Trebr_1465 SM00460 Transglutaminase/protease-like homologues Trebr_1472 SM00382 ATPases associated with a variety of cellular activities Trebr_1472 SM01086 C-terminal, D2-small domain, of ClpB protein Trebr_1475 SM01264 Trebr_1475 Trebr_1476 SM00917 LeuA allosteric (dimerisation) domain Trebr_1478 SM00421 helix_turn_helix, Lux Regulon Trebr_1479 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Trebr_1480 SM00382 ATPases associated with a variety of cellular activities Trebr_1484 SM00248 ankyrin repeats Trebr_1488 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_1489 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_1490 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Trebr_1490 SM00448 cheY-homologous receiver domain Trebr_1491 SM00073 Histidine Phosphotransfer domain Trebr_1491 SM00260 Two component signalling adaptor domain Trebr_1491 SM00387 Histidine kinase-like ATPases Trebr_1491 SM00448 cheY-homologous receiver domain Trebr_1492 SM00138 Methyltransferase, chemotaxis proteins Trebr_1495 SM00260 Two component signalling adaptor domain Trebr_1496 SM00271 DnaJ molecular chaperone homology domain Trebr_1508 SM00342 helix_turn_helix, arabinose operon control protein Trebr_1515 SM00858 Trebr_1515 Trebr_1524 SM00267 diguanylate cyclase Trebr_1525 SM00028 Tetratricopeptide repeats Trebr_1529 SM00478 endonuclease III Trebr_1531 SM00382 ATPases associated with a variety of cellular activities Trebr_1531 SM00464 Found in ATP-dependent protease La (LON) Trebr_1532 SM00220 Serine/Threonine protein kinases, catalytic domain Trebr_1534 SM00240 Forkhead associated domain Trebr_1554 SM00635 Bacterial Ig-like domain 2 Trebr_1560 SM00342 helix_turn_helix, arabinose operon control protein Trebr_1566 SM00342 helix_turn_helix, arabinose operon control protein Trebr_1578 SM00382 ATPases associated with a variety of cellular activities Trebr_1578 SM00994 ClpX C4-type zinc finger Trebr_1578 SM01086 C-terminal, D2-small domain, of ClpB protein Trebr_1580 SM00487 DEAD-like helicases superfamily Trebr_1580 SM00490 helicase superfamily c-terminal domain Trebr_1582 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Trebr_1582 SM00534 ATPase domain of DNA mismatch repair MUTS family Trebr_1583 SM00935 Outer membrane protein (OmpH-like) Trebr_1593 SM00479 Trebr_1593 Trebr_1595 SM00257 Lysin motif Trebr_1608 SM00881 CoA binding domain Trebr_1610 SM00849 Metallo-beta-lactamase superfamily Trebr_1611 SM00712 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. Trebr_1619 SM00387 Histidine kinase-like ATPases Trebr_1619 SM00388 His Kinase A (phosphoacceptor) domain Trebr_1620 SM00448 cheY-homologous receiver domain Trebr_1620 SM00862 Transcriptional regulatory protein, C terminal Trebr_1647 SM00530 Helix-turn-helix XRE-family like proteins Trebr_1660 SM00530 Helix-turn-helix XRE-family like proteins Trebr_1662 SM00463 Small MutS-related domain Trebr_1662 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Trebr_1662 SM00534 ATPase domain of DNA mismatch repair MUTS family Trebr_1671 SM00345 helix_turn_helix gluconate operon transcriptional repressor Trebr_1672 SM00854 Bacterial capsule synthesis protein PGA_cap Trebr_1674 SM00998 Adenylosuccinate lyase C-terminus Trebr_1676 SM00421 helix_turn_helix, Lux Regulon Trebr_1676 SM00448 cheY-homologous receiver domain Trebr_1681 SM00382 ATPases associated with a variety of cellular activities Trebr_1685 SM00642 Alpha-amylase domain Trebr_1691 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trebr_1693 SM00271 DnaJ molecular chaperone homology domain Trebr_1708 SM00897 FIST N domain Trebr_1708 SM01204 Trebr_1708 Trebr_1709 SM00052 Putative diguanylate phosphodiesterase Trebr_1709 SM00267 diguanylate cyclase Trebr_1710 SM00363 S4 RNA-binding domain Trebr_1711 SM00346 helix_turn_helix isocitrate lyase regulation Trebr_1715 SM00360 RNA recognition motif Trebr_1718 SM00028 Tetratricopeptide repeats Trebr_1719 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trebr_1719 SM00382 ATPases associated with a variety of cellular activities Trebr_1720 SM00316 Ribosomal protein S1-like RNA-binding domain Trebr_1722 SM00363 S4 RNA-binding domain Trebr_1726 SM00382 ATPases associated with a variety of cellular activities Trebr_1735 SM00470 ParB-like nuclease domain Trebr_1738 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_1738 SM00331 Sigma factor PP2C-like phosphatases Trebr_1743 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_1744 SM00028 Tetratricopeptide repeats Trebr_1754 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Trebr_1757 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Trebr_1757 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Trebr_1766 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trebr_1768 SM00382 ATPases associated with a variety of cellular activities Trebr_1776 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_1789 SM00382 ATPases associated with a variety of cellular activities Trebr_1790 SM00382 ATPases associated with a variety of cellular activities Trebr_1792 SM00530 Helix-turn-helix XRE-family like proteins Trebr_1794 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_1794 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_1817 SM00382 ATPases associated with a variety of cellular activities Trebr_1826 SM00116 Domain in cystathionine beta-synthase and other proteins. Trebr_1826 SM01240 Trebr_1826 Trebr_1831 SM00563 Phosphate acyltransferases Trebr_1832 SM00491 Trebr_1832 Trebr_1833 SM00028 Tetratricopeptide repeats Trebr_1833 SM00954 Region found in RelA / SpoT proteins Trebr_1835 SM00909 Sporulation and spore germination Trebr_1836 SM00646 Trebr_1836 Trebr_1837 SM01209 Trebr_1837 Trebr_1841 SM00642 Alpha-amylase domain Trebr_1844 SM00853 MutL C terminal dimerisation domain Trebr_1844 SM01340 Trebr_1844 Trebr_1845 SM00028 Tetratricopeptide repeats Trebr_1845 SM00671 Sel1-like repeats. Trebr_1846 SM00028 Tetratricopeptide repeats Trebr_1847 SM00028 Tetratricopeptide repeats Trebr_1850 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Trebr_1850 SM00331 Sigma factor PP2C-like phosphatases Trebr_1861 SM00859 Semialdehyde dehydrogenase, NAD binding domain Trebr_1862 SM00421 helix_turn_helix, Lux Regulon Trebr_1862 SM00448 cheY-homologous receiver domain Trebr_1866 SM00028 Tetratricopeptide repeats Trebr_1867 SM00530 Helix-turn-helix XRE-family like proteins Trebr_1868 SM00530 Helix-turn-helix XRE-family like proteins Trebr_1884 SM00788 Adenylosuccinate synthetase Trebr_1888 SM00838 Elongation factor G C-terminus Trebr_1888 SM00889 Elongation factor G, domain IV Trebr_1894 SM00244 prohibitin homologues Trebr_1900 SM00382 ATPases associated with a variety of cellular activities Trebr_1905 SM00448 cheY-homologous receiver domain Trebr_1907 SM00411 bacterial (prokaryotic) histone like domain Trebr_1926 SM00354 helix_turn _helix lactose operon repressor Trebr_1927 SM00886 Stress responsive A/B Barrel Domain Trebr_1936 SM00740 Trebr_1936 Trebr_1938 SM00257 Lysin motif Trebr_1945 SM01058 CarD-like/TRCF domain Trebr_1958 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Trebr_1961 SM00028 Tetratricopeptide repeats Trebr_1963 SM00465 GIY-YIG type nucleases (URI domain) Trebr_1965 SM00316 Ribosomal protein S1-like RNA-binding domain Trebr_1965 SM00322 K homology RNA-binding domain Trebr_1966 SM01387 Trebr_1966 Trebr_1971 SM00316 Ribosomal protein S1-like RNA-binding domain Trebr_1979 SM00287 Bacterial SH3 domain homologues Trebr_1993 SM00220 Serine/Threonine protein kinases, catalytic domain Trebr_1994 SM00530 Helix-turn-helix XRE-family like proteins Trebr_2000 SM00382 ATPases associated with a variety of cellular activities Trebr_2024 SM01068 Putative carbohydrate binding domain Trebr_2040 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Trebr_2044 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_2045 SM01329 Trebr_2045 Trebr_2050 SM00530 Helix-turn-helix XRE-family like proteins Trebr_2066 SM00382 ATPases associated with a variety of cellular activities Trebr_2068 SM00354 helix_turn _helix lactose operon repressor Trebr_2070 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Trebr_2072 SM00838 Elongation factor G C-terminus Trebr_2072 SM00889 Elongation factor G, domain IV Trebr_2076 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Trebr_2076 SM00474 3'-5' exonuclease Trebr_2076 SM00475 5'-3' exonuclease Trebr_2076 SM00482 DNA polymerase A domain Trebr_2086 SM00448 cheY-homologous receiver domain Trebr_2087 SM00073 Histidine Phosphotransfer domain Trebr_2087 SM00387 Histidine kinase-like ATPases Trebr_2087 SM00388 His Kinase A (phosphoacceptor) domain Trebr_2087 SM00448 cheY-homologous receiver domain Trebr_2090 SM00316 Ribosomal protein S1-like RNA-binding domain Trebr_2091 SM00271 DnaJ molecular chaperone homology domain Trebr_2092 SM00463 Small MutS-related domain Trebr_2094 SM00028 Tetratricopeptide repeats Trebr_2094 SM00327 von Willebrand factor (vWF) type A domain Trebr_2095 SM00327 von Willebrand factor (vWF) type A domain Trebr_2106 SM00357 Cold shock protein domain Trebr_2106 SM00382 ATPases associated with a variety of cellular activities Trebr_2106 SM00959 Rho termination factor, N-terminal domain Trebr_2113 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_2113 SM00954 Region found in RelA / SpoT proteins Trebr_2115 SM00937 Trebr_2115 Trebr_2121 SM00098 Alkaline phosphatase homologues Trebr_2135 SM00116 Domain in cystathionine beta-synthase and other proteins. Trebr_2135 SM01091 Transporter associated domain Trebr_2136 SM01091 Transporter associated domain Trebr_2138 SM01211 Trebr_2138 Trebr_2142 SM00344 helix_turn_helix ASNC type Trebr_2144 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_2145 SM00382 ATPases associated with a variety of cellular activities Trebr_2150 SM00382 ATPases associated with a variety of cellular activities Trebr_2153 SM00825 Beta-ketoacyl synthase Trebr_2157 SM00060 Fibronectin type 3 domain Trebr_2157 SM00710 Parallel beta-helix repeats Trebr_2169 SM00382 ATPases associated with a variety of cellular activities Trebr_2179 SM00487 DEAD-like helicases superfamily Trebr_2186 SM00530 Helix-turn-helix XRE-family like proteins Trebr_2193 SM00740 Trebr_2193 Trebr_2195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_2200 SM00642 Alpha-amylase domain Trebr_2203 SM00052 Putative diguanylate phosphodiesterase Trebr_2203 SM00267 diguanylate cyclase Trebr_2209 SM00226 Low molecular weight phosphatase family Trebr_2213 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Trebr_2237 SM00530 Helix-turn-helix XRE-family like proteins Trebr_2239 SM00642 Alpha-amylase domain Trebr_2245 SM00271 DnaJ molecular chaperone homology domain Trebr_2251 SM00382 ATPases associated with a variety of cellular activities Trebr_2254 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Trebr_2254 SM00245 tail specific protease Trebr_2258 SM00861 Transketolase, pyrimidine binding domain Trebr_2262 SM00116 Domain in cystathionine beta-synthase and other proteins. Trebr_2263 SM00382 ATPases associated with a variety of cellular activities Trebr_2264 SM00382 ATPases associated with a variety of cellular activities Trebr_2270 SM00662 RNA polymerases D Trebr_2271 SM00363 S4 RNA-binding domain Trebr_2271 SM01390 Trebr_2271 Trebr_2284 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Trebr_2285 SM01374 Trebr_2285 Trebr_2292 SM01382 Trebr_2292 Trebr_2292 SM01383 Trebr_2292 Trebr_2296 SM01403 Trebr_2296 Trebr_2300 SM00663 RNA polymerase I subunit A N-terminus Trebr_2305 SM00649 Ribosomal protein L11/L12 Trebr_2306 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Trebr_2306 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Trebr_2316 SM00382 ATPases associated with a variety of cellular activities Trebr_2316 SM00843 Trebr_2316 Trebr_2319 SM01217 Trebr_2319 Trebr_2331 SM00267 diguanylate cyclase Trebr_2333 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Trebr_2333 SM01080 Trebr_2333 Trebr_2349 SM00342 helix_turn_helix, arabinose operon control protein Trebr_2358 SM00422 helix_turn_helix, mercury resistance Trebr_2363 SM00563 Phosphate acyltransferases Trebr_2370 SM00890 Domain of unknown function Trebr_2372 SM00382 ATPases associated with a variety of cellular activities Trebr_2380 SM00028 Tetratricopeptide repeats Trebr_2381 SM00257 Lysin motif Trebr_2383 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Trebr_2383 SM01080 Trebr_2383 Trebr_2385 SM00287 Bacterial SH3 domain homologues Trebr_2386 SM00116 Domain in cystathionine beta-synthase and other proteins. Trebr_2400 SM00316 Ribosomal protein S1-like RNA-binding domain Trebr_2400 SM00732 Likely ribonuclease with RNase H fold. Trebr_2407 SM00060 Fibronectin type 3 domain Trebr_2414 SM00493 Trebr_2414 Trebr_2416 SM00382 ATPases associated with a variety of cellular activities Trebr_2418 SM00487 DEAD-like helicases superfamily Trebr_2418 SM00490 helicase superfamily c-terminal domain Trebr_2419 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Trebr_2419 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_2430 SM00387 Histidine kinase-like ATPases Trebr_2439 SM00487 DEAD-like helicases superfamily Trebr_2439 SM00490 helicase superfamily c-terminal domain Trebr_2443 SM00487 DEAD-like helicases superfamily Trebr_2446 SM00470 ParB-like nuclease domain Trebr_2453 SM00470 ParB-like nuclease domain Trebr_2458 SM00487 DEAD-like helicases superfamily Trebr_2458 SM00490 helicase superfamily c-terminal domain Trebr_2462 SM00857 Resolvase, N terminal domain Trebr_2466 SM01018 B12 binding domain Trebr_2467 SM00530 Helix-turn-helix XRE-family like proteins Trebr_2472 SM00422 helix_turn_helix, mercury resistance Trebr_2472 SM00871 Bacterial transcription activator, effector binding domain Trebr_2475 SM00382 ATPases associated with a variety of cellular activities Trebr_2479 SM00382 ATPases associated with a variety of cellular activities Trebr_2482 SM00342 helix_turn_helix, arabinose operon control protein Trebr_2482 SM00448 cheY-homologous receiver domain Trebr_2483 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_2483 SM00387 Histidine kinase-like ATPases Trebr_2489 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_2490 SM00729 Elongator protein 3, MiaB family, Radical SAM Trebr_2492 SM00155 Phospholipase D. Active site motifs. Trebr_2510 SM01359 Trebr_2510 Trebr_2510 SM01360 Trebr_2510 Trebr_2521 SM00938 Nitrogen regulatory protein P-II Trebr_2531 SM00342 helix_turn_helix, arabinose operon control protein Trebr_2531 SM00448 cheY-homologous receiver domain Trebr_2532 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Trebr_2532 SM00387 Histidine kinase-like ATPases Trebr_2533 SM00347 helix_turn_helix multiple antibiotic resistance protein Trebr_2537 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Trebr_2543 SM00530 Helix-turn-helix XRE-family like proteins Trebr_2550 SM00710 Parallel beta-helix repeats Trebr_2555 SM00656 Trebr_2555 Trebr_2560 SM00873 B3/4 domain Trebr_2560 SM00874 tRNA synthetase B5 domain Trebr_2570 SM00382 ATPases associated with a variety of cellular activities Trebr_2575 SM00530 Helix-turn-helix XRE-family like proteins Trebr_2578 SM00354 helix_turn _helix lactose operon repressor Trebr_2586 SM00434 DNA Topoisomerase IV Trebr_2587 SM00387 Histidine kinase-like ATPases Trebr_2587 SM00433 TopoisomeraseII