locus_tag old_locus_tag gene Name start end strand product note type ID NCBI Trebr_0001 Trebr_0001 Trebr_0001 52 1593 + Chromosomal replication initiator protein dnaA COGs: COG0593 ATPase involved in DNA replication initiation~HAMAP: Chromosomal replication control%2C initiator DnaA~InterPro IPR003593:IPR013159:IPR013317:IPR001957~KEGG: ssm:Spirs_0001 chromosomal replication initiator protein DnaA~PFAM: Chromosomal replication control%2C initiator (DnaA)/regulator (Hda)%3B Chromosomal replication initiator%2C DnaA C-terminal~SMART: Chromosomal replication initiator%2C DnaA C-terminal%3B ATPase%2C AAA+ type%2C core~SPTR: Chromosomal replication initiator protein dnaA%3B~TIGRFAM: Chromosomal replication control%2C initiator DnaA~IMG reference gene:2504918866~PFAM: domain%3B Bacterial dnaA protein~TIGRFAM: chromosomal replication initiator protein DnaA gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0001 Trebr_0002 Trebr_0002 Trebr_0002 1841 2944 + DNA polymerase III%2C beta subunit COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)~InterPro IPR001001~KEGG: tde:TDE0231 DNA polymerase III%2C beta subunit~PFAM: DNA polymerase III%2C beta chain~PRIAM: DNA-directed DNA polymerase~SMART: DNA polymerase III%2C beta chain~SPTR: DNA polymerase III%2C beta subunit%3B~TIGRFAM: DNA polymerase III%2C beta chain~IMG reference gene:2504918867~PFAM: DNA polymerase III beta subunit%2C C-terminal domain%3B DNA polymerase III beta subunit%2C N-terminal domain%3B DNA polymerase III beta subunit%2C central domain~TIGRFAM: DNA polymerase III%2C beta subunit gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0002 Trebr_0003 Trebr_0003 Trebr_0003 2954 4042 + DNA replication and repair protein recF COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway)~HAMAP: DNA replication and repair protein recF~InterPro IPR003395:IPR001238~KEGG: tpp:TPASS_0003 recombination protein RecF~PFAM: RecF/RecN/SMC protein%2C N-terminal~SPTR: DNA replication and repair protein recF%3B~TIGRFAM: DNA-binding%2C RecF~IMG reference gene:2504918868~PFAM: RecF/RecN/SMC N terminal domain~TIGRFAM: recF protein gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0003 Trebr_0004 Trebr_0004 Trebr_0004 4035 4562 + protein of unknown function DUF721 InterPro IPR007922~KEGG: ssm:Spirs_0005 protein of unknown function DUF721~PFAM: Protein of unknown function DUF721~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918869~PFAM: Protein of unknown function (DUF721) gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0004 Trebr_0005 Trebr_0005 Trebr_0005 4651 4806 + 50S ribosomal protein L34 HAMAP: 50S ribosomal protein L34~InterPro IPR000271~KEGG: sta:STHERM_c00060 50S ribosomal protein L34~PFAM: Ribosomal protein L34~SPTR: 50S ribosomal protein L34%3B~TIGRFAM: Ribosomal protein L34~IMG reference gene:2504918870~PFAM: Ribosomal protein L34~TIGRFAM: ribosomal protein L34%2C bacterial type gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0005 Trebr_0006 Trebr_0006 Trebr_0006 4826 5188 + Ribonuclease P protein component COGs: COG0594 RNase P protein component~HAMAP: Ribonuclease P~InterPro IPR000100~KEGG: ssm:Spirs_0007 ribonuclease P protein component~PFAM: Ribonuclease P~SPTR: Ribonuclease P protein component%3B~TIGRFAM: Ribonuclease P~IMG reference gene:2504918871~PFAM: Ribonuclease P~TIGRFAM: ribonuclease P protein component%2C eubacterial gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0006 Trebr_0007 Trebr_0007 Trebr_0007 5185 5406 + UPF0161 protein yidD COGs: COG0759 conserved hypothetical protein~HAMAP: Protein of unknown function DUF37~InterPro IPR002696~KEGG: hna:Hneap_2412 protein of unknown function DUF37~PFAM: Protein of unknown function DUF37~SPTR: UPF0161 protein Hneap_2412%3B~TIGRFAM: Protein of unknown function DUF37~manually curated~IMG reference gene:2504918872~PFAM: Domain of unknown function DUF37~TIGRFAM: conserved hypothetical protein YidD gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0007 Trebr_0008 Trebr_0008 Trebr_0008 5446 7257 + Membrane protein oxaA COGs: COG0706 Preprotein translocase subunit YidC~HAMAP: Membrane protein oxaA~InterPro IPR001708:IPR019998:IPR020001~KEGG: tde:TDE2396 putative inner membrane protein translocase component YidC~PFAM: Membrane insertion protein%2C OxaA/YidC~SPTR: Membrane protein oxaA%3B~TIGRFAM: Membrane insertion protein%2C OxaA/YidC%2C core%3B Membrane insertion protein%2C OxoA/YidC%2C N-terminal~IMG reference gene:2504918873~PFAM: 60Kd inner membrane protein~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family%2C C-terminal domain%3B membrane protein insertase%2C YidC/Oxa1 family%2C N-terminal domain gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0008 Trebr_0009 Trebr_0009 Trebr_0009 7297 7998 + single-stranded nucleic acid binding R3H domain-containing protein COGs: COG1847 RNA-binding protein~InterPro IPR001374~KEGG: ssm:Spirs_0009 single-stranded nucleic acid binding R3H domain protein~PFAM: Single-stranded nucleic acid binding R3H~SMART: Single-stranded nucleic acid binding R3H~SPTR: Protein jag%3B~IMG reference gene:2504918874~PFAM: R3H domain gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0009 Trebr_0010 Trebr_0010 Trebr_0010 7998 8948 + hypothetical protein KEGG: tde:TDE2392 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918875 gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0010 Trebr_0011 Trebr_0011 Trebr_0011 8945 9973 + peptidyl-prolyl cis-trans isomerase cyclophilin type COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family~InterPro IPR002130:IPR001179~KEGG: tde:TDE2391 peptidyl-prolyl cis-trans isomerase~PFAM: Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%3B Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~SPTR: Peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2504918876~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase%3B Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0011 Trebr_0012 Trebr_0012 Trebr_0012 10081 10638 + hypothetical protein IMG reference gene:2504918877 gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0012 Trebr_0013 Trebr_0013 Trebr_0013 10647 12137 + hypothetical protein IMG reference gene:2504918878 gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0013 Trebr_0014 Trebr_0014 Trebr_0014 12321 13394 + hypothetical protein IMG reference gene:2504918879~PFAM: NlpC/P60 family gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0014 Trebr_0015 Trebr_0015 Trebr_0015 13391 14596 + hypothetical protein KEGG: sta:STHERM_c19940 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918880 gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0015 Trebr_0016 Trebr_0016 Trebr_0016 14943 16370 + OmpA/MotB domain protein COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein~InterPro IPR006665~KEGG: tde:TDE1992 OmpA family protein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: OmpA family protein%3B~IMG reference gene:2504918881~PFAM: OmpA family gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0016 Trebr_0017 Trebr_0017 Trebr_0017 16633 18039 - Uronate isomerase COGs: COG1904 Glucuronate isomerase~HAMAP: Uronate isomerase~InterPro IPR003766~KEGG: brm:Bmur_2037 glucuronate isomerase~PFAM: Uronate isomerase~PRIAM: Glucuronate isomerase~SPTR: Uronate isomerase%3B~IMG reference gene:2504918882~PFAM: Glucuronate isomerase gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0017 Trebr_0018 Trebr_0018 Trebr_0018 18036 19607 - Altronate dehydratase COGs: COG2721 Altronate dehydratase~InterPro IPR013974:IPR007392~KEGG: csh:Closa_1093 altronate dehydratase~PFAM: D-galactarate dehydratase/Altronate hydrolase%2C C-terminal%3B SAF domain~PRIAM: Altronate dehydratase~SPTR: D-galactarate dehydratase%3B~IMG reference gene:2504918883~PFAM: D-galactarate dehydratase / Altronate hydrolase%2C C terminus%3B SAF domain gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0018 Trebr_0019 Trebr_0019 Trebr_0019 19638 21116 - Tagaturonate reductase COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase~InterPro IPR013131:IPR013118~KEGG: cbe:Cbei_1838 altronate oxidoreductase~PFAM: Mannitol dehydrogenase%2C C-terminal%3B Mannitol dehydrogenase%2C N-terminal~PRIAM: Tagaturonate reductase~SPTR: Mannitol dehydrogenase%2C C-terminal domain%3B~IMG reference gene:2504918884~PFAM: Mannitol dehydrogenase C-terminal domain%3B Mannitol dehydrogenase Rossmann domain gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0019 Trebr_0020 Trebr_0020 Trebr_0020 21295 24633 + transcriptional regulator%2C AraC family COGs: COG1609 Transcriptional regulators~InterPro IPR018060:IPR000005~KEGG: rca:Rcas_3135 PAS/PAC sensor hybrid histidine kinase~PFAM: Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain~SPTR: PAS/PAC sensor hybrid histidine kinase%3B~IMG reference gene:2504918885~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family%3B family gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0020 Trebr_0021 Trebr_0021 Trebr_0021 24801 25730 + ABC-type transporter%2C integral membrane subunit COGs: COG4209 ABC-type polysaccharide transport system permease component~InterPro IPR000515~KEGG: mrb:Mrub_0281 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504918886~PFAM: Binding-protein-dependent transport system inner membrane component gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0021 Trebr_0022 Trebr_0022 Trebr_0022 25743 26645 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: mrb:Mrub_0280 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504918887~PFAM: Binding-protein-dependent transport system inner membrane component gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0022 Trebr_0023 Trebr_0023 Trebr_0023 26731 28299 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: mrb:Mrub_0279 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504918888~PFAM: Bacterial extracellular solute-binding protein gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0023 Trebr_0024 Trebr_0024 Trebr_0024 28531 30331 + pseudogene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0024 Trebr_0025 Trebr_0025 Trebr_0025 30297 33071 + hypothetical protein KEGG: tde:TDE1985 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918890~PFAM: FecR protein gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0025 Trebr_0026 Trebr_0026 Trebr_0026 33061 34293 + hypothetical protein KEGG: tde:TDE1984 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918891 gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0026 Trebr_0027 Trebr_0027 Trebr_0027 34295 36961 + hypothetical protein KEGG: tde:TDE1933 hypothetical protein~SPTR: Polymorphic outer membrane protein%3B~IMG reference gene:2504918892 gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0027 Trebr_0028 Trebr_0028 Trebr_0028 36975 40076 + polymorphic outer membrane protein InterPro IPR006626:IPR003368~KEGG: rba:RB4375 extracellular nuclease~PFAM: Polymorphic membrane protein%2C Chlamydia~SPTR: Polymorphic outer membrane protein%3B~TIGRFAM: Polymorphic membrane protein%2C Chlamydia~IMG reference gene:2504918893 gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0028 Trebr_0029 Trebr_0029 Trebr_0029 40643 40861 + hypothetical protein IMG reference gene:2504918894 gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0029 Trebr_0030 Trebr_0030 Trebr_0030 40946 41638 + hypothetical protein KEGG: dps:DP2996 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918895 gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0030 Trebr_0031 Trebr_0031 Trebr_0031 41735 42487 + tRNA/rRNA methyltransferase (SpoU) COGs: COG0566 rRNA methylase~InterPro IPR013123:IPR001537~KEGG: tde:TDE2713 RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase%2C SpoU%3B RNA 2-O ribose methyltransferase%2C substrate binding~SPTR: RNA methyltransferase%2C TrmH family%3B~IMG reference gene:2504918896~PFAM: SpoU rRNA Methylase family%3B RNA 2'-O ribose methyltransferase substrate binding gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0031 Trebr_0032 Trebr_0032 Trebr_0032 42622 43137 + hypothetical protein COGs: COG3663 G:T/U mismatch-specific DNA glycosylase~KEGG: ele:Elen_2134 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918897~PFAM: Uracil DNA glycosylase superfamily gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0032 Trebr_0033 Trebr_0033 Trebr_0033 43317 44192 + phosphoesterase PA-phosphatase related protein InterPro IPR000326~KEGG: sli:Slin_1798 phosphoesterase PA-phosphatase related protein~PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase~SMART: Phosphatidic acid phosphatase type 2/haloperoxidase~SPTR: Phosphoesterase PA-phosphatase related protein%3B~IMG reference gene:2504918898~PFAM: PAP2 superfamily gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0033 Trebr_0034 Trebr_0034 Trebr_0034 44197 44742 + phosphodiesterase%2C MJ0936 family COGs: COG0622 phosphoesterase~InterPro IPR004843:IPR000979~KEGG: ele:Elen_1720 phosphodiesterase%2C MJ0936 family~PFAM: Metallophosphoesterase~SPTR: Phosphodiesterase%2C MJ0936 family%3B~TIGRFAM: Uncharacterised protein family UPF0025~IMG reference gene:2504918899~PFAM: Calcineurin-like phosphoesterase~TIGRFAM: phosphoesterase%2C MJ0936 family gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0034 Trebr_0035 Trebr_0035 Trebr_0035 44722 45180 - transcriptional regulator%2C BadM/Rrf2 family COGs: COG1959 transcriptional regulator protein~InterPro IPR000944~KEGG: csh:Closa_2673 transcriptional regulator%2C BadM/Rrf2 family~PFAM: Transcriptional regulator%2C Rrf2~SPTR: Transcriptional regulator%2C BadM/Rrf2 family%3B~TIGRFAM: Transcriptional regulator%2C Rrf2~IMG reference gene:2504918900~PFAM: Transcriptional regulator~TIGRFAM: Rrf2 family protein gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0035 Trebr_0036 Trebr_0036 Trebr_0036 45240 46721 - Diaminobutyrate decarboxylase COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein~InterPro IPR002129~KEGG: bpu:BPUM_1020 diaminobutyrate decarboxylase~PFAM: Pyridoxal phosphate-dependent decarboxylase~PRIAM: Diaminobutyrate decarboxylase~SPTR: L-2%2C4-diaminobutyrate decarboxylase (Daba decarboxylase)(Daba-dc)%3B~IMG reference gene:2504918901~PFAM: Pyridoxal-dependent decarboxylase conserved domain gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0036 Trebr_0037 Trebr_0037 Trebr_0037 46708 48069 - 2%2C4-diaminobutyrate 4-transaminase COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase~InterPro IPR005814:IPR004637~KEGG: pva:Pvag_pPag30242 diaminobutyrate--2-oxoglutarateaminotransferase~PFAM: Aminotransferase class-III~PRIAM: Diaminobutyrate--2-oxoglutarate transaminase~SPTR: Diaminobutyrate--2-oxoglutarate aminotransferase%3B~TIGRFAM: Diaminobutyrate-2-oxoglutarate transaminase~IMG reference gene:2504918902~PFAM: Aminotransferase class-III~TIGRFAM: 2%2C4-diaminobutyrate 4-transaminases gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0037 Trebr_0038 Trebr_0038 Trebr_0038 48319 48546 + pseudogene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0038 Trebr_0039 Trebr_0039 Trebr_0039 48765 49664 + protein of unknown function DUF368 COGs: COG2035 membrane protein~InterPro IPR007163~KEGG: lme:LEUM_1472 hypothetical protein~PFAM: Protein of unknown function DUF368~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918904~PFAM: Domain of unknown function (DUF368) gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0039 Trebr_0040 Trebr_0040 Trebr_0040 49785 50345 - hypothetical protein IMG reference gene:2504918905 gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0040 Trebr_0041 Trebr_0041 Trebr_0041 50399 51073 - YhhN family protein InterPro IPR012506~KEGG: tde:TDE2729 hypothetical protein~PFAM: YhhN-like~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504918906~PFAM: YhhN-like protein gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0041 Trebr_0042 Trebr_0042 Trebr_0042 51380 52699 + Alpha-galactosidase COGs: COG1486 Alpha-galactosidase/6-phospho-beta-glucosidase family 4 of glycosyl hydrolase~InterPro IPR001088~KEGG: cpy:Cphy_0769 glycoside hydrolase family protein~PFAM: Glycoside hydrolase%2C family 4~PRIAM: Alpha-galactosidase~SPTR: Glycoside hydrolase family 4%3B~IMG reference gene:2504918907~PFAM: Family 4 glycosyl hydrolase%3B Family 4 glycosyl hydrolase C-terminal domain gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0042 Trebr_0043 Trebr_0043 Trebr_0043 52784 54043 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: cbe:Cbei_4445 extracellular solute-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein%3B~IMG reference gene:2504918908~PFAM: Bacterial extracellular solute-binding protein gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0043 Trebr_0044 Trebr_0044 Trebr_0044 54134 55033 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: sak:SAK_0533 sugar ABC transporter%2C permease protein%2C putative~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Carbohydrate ABC transporter membrane protein 1%2C CUT1 family (TC 3.A.1.1.-)%3B~IMG reference gene:2504918909~PFAM: Binding-protein-dependent transport system inner membrane component gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0044 Trebr_0045 Trebr_0045 Trebr_0045 55111 55941 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918910~PFAM: Binding-protein-dependent transport system inner membrane component gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0045 Trebr_0046 Trebr_0046 Trebr_0046 55893 56768 - transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060:IPR003313:IPR000005~KEGG: csh:Closa_0320 transcriptional regulator%2C AraC family~PFAM: AraC protein%2C arabinose-binding/dimerisation%3B Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504918911~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family%3B AraC-like ligand binding domain gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0046 Trebr_0047 Trebr_0047 Trebr_0047 56838 57323 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein COGs: COG3467 flavin-nucleotide-binding protein~KEGG: fsu:Fisuc_2301 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein~SPTR: Predicted flavin-nucleotide-binding protein%3B~IMG reference gene:2504918912~PFAM: Pyridoxamine 5'-phosphate oxidase gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0047 Trebr_0048 Trebr_0048 Trebr_0048 57475 58848 - pyridoxal-phosphate dependent TrpB-like enzyme COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB)~InterPro IPR001926:IPR006316~KEGG: ccb:Clocel_2504 pyridoxal-phosphate dependent TrpB-like enzyme~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~PRIAM: Tryptophan synthase~SPTR: Pyridoxal-phosphate dependent TrpB-like enzyme%3B~TIGRFAM: Tryptophan synthase%2C beta chain-like~IMG reference gene:2504918913~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0048 Trebr_0049 Trebr_0049 Trebr_0049 59122 59451 - helix-turn-helix domain protein InterPro IPR001387~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~IMG reference gene:2504918914~PFAM: Helix-turn-helix gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0049 Trebr_0050 Trebr_0050 Trebr_0050 59620 60735 + hypothetical protein KEGG: cbe:Cbei_1299 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918915~PFAM: Acyltransferase family gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0050 Trebr_0051 Trebr_0051 Trebr_0051 60800 61750 - Auxin Efflux Carrier COGs: COG0679 permease~InterPro IPR004776~KEGG: brm:Bmur_2337 auxin efflux carrier~PFAM: Auxin efflux carrier~SPTR: Auxin Efflux Carrier%3B~IMG reference gene:2504918916~PFAM: Membrane transport protein gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0051 Trebr_0052 Trebr_0052 Trebr_0052 61771 62409 - L-fuculose-phosphate aldolase COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase~InterPro IPR001303~KEGG: bcg:BCG9842_B4923 L-fuculose phosphate aldolase~PFAM: Class II aldolase/adducin%2C N-terminal~PRIAM: L-fuculose-phosphate aldolase~SPTR: Aldolase%2C class II%3B~IMG reference gene:2504918917~PFAM: Class II Aldolase and Adducin N-terminal domain~TIGRFAM: L-ribulose-5-phosphate 4-epimerase gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0052 Trebr_0053 Trebr_0053 Trebr_0053 62460 63503 - Phosphoglycerate dehydrogenase COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase~InterPro IPR006139:IPR006140~KEGG: elm:ELI_0529 hypothetical protein~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic region~PRIAM: Phosphoglycerate dehydrogenase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918918~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0053 Trebr_0054 Trebr_0054 Trebr_0054 63618 65141 - L-xylulokinase COGs: COG1070 Sugar (pentulose and hexulose) kinase~InterPro IPR018484:IPR018485~KEGG: elm:ELI_0528 hypothetical protein~PFAM: Carbohydrate kinase%2C FGGY%2C N-terminal%3B Carbohydrate kinase%2C FGGY%2C C-terminal~PRIAM: L-xylulokinase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918919~PFAM: FGGY family of carbohydrate kinases%2C N-terminal domain%3B FGGY family of carbohydrate kinases%2C C-terminal domain gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0054 Trebr_0055 Trebr_0055 Trebr_0055 65258 66211 - transcriptional regulator%2C DeoR family COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain~InterPro IPR007324~KEGG: elm:ELI_0527 hypothetical protein~PFAM: Putative sugar-binding region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918920~PFAM: Putative sugar-binding domain gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0055 Trebr_0056 Trebr_0056 Trebr_0056 66291 66509 - hypothetical protein COGs: COG4877 conserved hypothetical protein~KEGG: cst:CLOST_2156 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918921 gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0056 Trebr_0057 Trebr_0057 Trebr_0057 66513 67541 - band 7 protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR001107~KEGG: eel:EUBELI_02036 hypothetical protein~PFAM: Band 7 protein~SMART: Band 7 protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918922~PFAM: SPFH domain / Band 7 family gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0057 Trebr_0058 Trebr_0058 Trebr_0058 67768 70098 - ABC transporter related protein COGs: COG0178 Excinuclease ATPase subunit~InterPro IPR003439~KEGG: bln:Blon_1685 ABC transporter related~PFAM: ABC transporter-like~SPTR: ABC transporter related protein%3B~IMG reference gene:2504918923~PFAM: ABC transporter~TIGRFAM: excinuclease ABC%2C A subunit gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0058 Trebr_0059 Trebr_0059 Trebr_0059 70173 71024 - phenazine biosynthesis protein PhzF family COGs: COG0384 epimerase PhzC/PhzF homolog~InterPro IPR003719~KEGG: cba:CLB_2120 PhzF family phenazine biosynthesis protein~PFAM: Phenazine biosynthesis PhzC/PhzF protein~SPTR: Phenazine biosynthesis protein%2C PhzF family%3B~TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein~IMG reference gene:2504918924~PFAM: Phenazine biosynthesis-like protein~TIGRFAM: phenazine biosynthesis protein PhzF family gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0059 Trebr_0060 Trebr_0060 Trebr_0060 71057 71551 - protein of unknown function UPF0153 InterPro IPR005358~KEGG: sss:SSUSC84_0904 hypothetical protein~PFAM: Uncharacterised protein family UPF0153~SPTR: Predicted Fe-S-cluster oxidoreductase%3B~manually curated~IMG reference gene:2504918925~PFAM: Uncharacterised protein family (UPF0153) gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0060 Trebr_0061 Trebr_0061 Trebr_0061 71717 72400 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein InterPro IPR011576~KEGG: str:Sterm_2242 hypothetical protein~PFAM: Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918926~PFAM: Pyridoxamine 5'-phosphate oxidase gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0061 Trebr_0062 Trebr_0062 Trebr_0062 72581 73801 - Phosphopentomutase COGs: COG1015 Phosphopentomutase~HAMAP: Phosphopentomutase~InterPro IPR013553:IPR006124:IPR010045~KEGG: cpf:CPF_0376 phosphopentomutase~PRIAM: Phosphopentomutase~SPTR: Phosphopentomutase%3B~TIGRFAM: Phosphopentomutase~IMG reference gene:2504918927~PFAM: Metalloenzyme superfamily~TIGRFAM: phosphopentomutase gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0062 Trebr_0063 Trebr_0063 Trebr_0063 73791 74597 - uridine phosphorylase COGs: COG2820 Uridine phosphorylase~InterPro IPR000845:IPR010058~KEGG: sak:SAK_2011 uridine phosphorylase~PFAM: Nucleoside phosphorylase~PRIAM: Uridine phosphorylase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Uridine phosphorylase~IMG reference gene:2504918928~PFAM: Phosphorylase superfamily~TIGRFAM: uridine phosphorylase gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0063 Trebr_0064 Trebr_0064 Trebr_0064 75230 75385 + hypothetical protein IMG reference gene:2504918929 gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0064 Trebr_0065 Trebr_0065 Trebr_0065 75462 77024 + 5'-nucleotidase COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase~InterPro IPR004843:IPR008334~KEGG: ssm:Spirs_1043 5'-nucleotidase~PFAM: 5'-Nucleotidase%2C C-terminal%3B Metallophosphoesterase~PRIAM: 5'-nucleotidase~SPTR: 5'-nucleotidase%3B~IMG reference gene:2504918930~PFAM: Calcineurin-like phosphoesterase%3B 5'-nucleotidase%2C C-terminal domain gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0065 Trebr_0066 Trebr_0066 Trebr_0066 77171 78187 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: ipo:Ilyop_0110 transcriptional regulator%2C LacI family~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504918931~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0066 Trebr_0067 Trebr_0067 Trebr_0067 78223 79749 + Monosaccharide-transporting ATPase COGs: COG3845 ABC-type uncharacterized transport systems ATPase components~InterPro IPR003593:IPR003439~KEGG: cbt:CLH_2725 galactose/methyl galactoside import ATP-binding protein MglA~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Sugar ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504918932~PFAM: ABC transporter gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0067 Trebr_0068 Trebr_0068 Trebr_0068 79736 80779 + ABC-type transporter%2C integral membrane subunit COGs: COG4603 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: cpr:CPR_1550 ABC transporter permease~PFAM: Bacterial inner-membrane translocator~SPTR: ABC transporter%2C permease protein%3B~IMG reference gene:2504918933~PFAM: Branched-chain amino acid transport system / permease component gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0068 Trebr_0069 Trebr_0069 Trebr_0069 80789 81736 + ABC-type transporter%2C integral membrane subunit COGs: COG1079 ABC-type transport system permease component~InterPro IPR001851~KEGG: cpe:CPE1577 ABC transporter~PFAM: Bacterial inner-membrane translocator~SPTR: ABC transporter%3B~IMG reference gene:2504918934~PFAM: Branched-chain amino acid transport system / permease component gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0069 Trebr_0070 Trebr_0070 Trebr_0070 81864 82514 + Deoxyribose-phosphate aldolase COGs: COG0274 Deoxyribose-phosphate aldolase~HAMAP: Deoxyribose-phosphate aldolase~InterPro IPR002915:IPR011343~KEGG: ipo:Ilyop_1462 deoxyribose-phosphate aldolase~PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase~PRIAM: Deoxyribose-phosphate aldolase~SPTR: Deoxyribose-phosphate aldolase%3B~TIGRFAM: Deoxyribose-phosphate aldolase~IMG reference gene:2504918935~PFAM: DeoC/LacD family aldolase~TIGRFAM: deoxyribose-phosphate aldolase gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0070 Trebr_0071 Trebr_0071 Trebr_0071 82612 83673 + basic membrane lipoprotein COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein~InterPro IPR003760~KEGG: cbk:CLL_A2974 membrane lipoprotein TmpC~PFAM: Basic membrane lipoprotein~SPTR: Membrane lipoprotein tmpc%3B~IMG reference gene:2504918936~PFAM: Basic membrane protein gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0071 Trebr_0072 Trebr_0072 Trebr_0072 83960 84622 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 COGs: COG0637 phosphatase/phosphohexomutase~InterPro IPR005834:IPR006402~KEGG: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~manually curated~IMG reference gene:2504918937~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0072 Trebr_0073 Trebr_0073 Trebr_0073 84676 85225 - pseudogene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0073 Trebr_0074 Trebr_0074 Trebr_0074 85591 85920 - hypothetical protein IMG reference gene:2504918939 gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0074 Trebr_0075 Trebr_0075 Trebr_0075 85932 86417 - hypothetical protein IMG reference gene:2504918940~PFAM: Curli production assembly/transport component CsgG gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0075 Trebr_0076 Trebr_0076 Trebr_0076 86672 86797 - pseudogene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0076 Trebr_0077 Trebr_0077 Trebr_0077 86802 86951 - hypothetical protein KEGG: tde:TDE0196 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918942~PFAM: Uncharacterized protein conserved in bacteria (DUF2191) gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0077 Trebr_0078 Trebr_0078 Trebr_0078 87346 87813 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: bay:RBAM_024110 YrkN~PFAM: GCN5-related N-acetyltransferase~SPTR: Acetyltransferase%2C GNAT family%3B~IMG reference gene:2504918943~PFAM: Acetyltransferase (GNAT) family gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0078 Trebr_0079 Trebr_0079 Trebr_0079 88212 88688 - hypothetical protein IMG reference gene:2504918944 gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0079 Trebr_0080 Trebr_0080 Trebr_0080 89050 89898 - hypothetical protein KEGG: ppy:PPE_01337 methyltransferase type 11~SPTR: Methyltransferase type 11%3B~IMG reference gene:2504918945 gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0080 Trebr_0081 Trebr_0081 Trebr_0081 89991 90818 - hypothetical protein KEGG: dde:Dde_0890 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918946 gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0081 Trebr_0082 Trebr_0082 Trebr_0082 91066 92196 + transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: bpb:bpr_IV010 IS110 family transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504918947~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0082 Trebr_0083 Trebr_0083 Trebr_0083 92462 93540 - pseudogene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0083 Trebr_0084 Trebr_0084 Trebr_0084 93533 94732 - DNA methylase N-4/N-6 domain protein COGs: COG0863 DNA modification methylase~InterPro IPR002941~KEGG: mar:MAE_14190 site-specific DNA-methyltransferase~PFAM: DNA methylase N-4/N-6~SPTR: Site-specific DNA-methyltransferase (Cytosine-N4-specific)%3B~IMG reference gene:2504918949~PFAM: DNA methylase gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0084 Trebr_0085 Trebr_0085 Trebr_0085 95281 95370 + pseudogene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0085 Trebr_0086 Trebr_0086 Trebr_0086 95433 96149 - Methyltransferase type 11 COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase~InterPro IPR013216~KEGG: tde:TDE1608 hypothetical protein~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918951~PFAM: Methyltransferase domain gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0086 Trebr_0087 Trebr_0087 Trebr_0087 96346 97332 + Sulfate-transporting ATPase COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: ssm:Spirs_0361 ABC transporter related protein~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504918952~PFAM: ABC transporter gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0087 Trebr_0088 Trebr_0088 Trebr_0088 97325 98224 + ABC-2 type transporter InterPro IPR013525~KEGG: ssm:Spirs_0360 ABC-type transport system%2C membrane protein~PFAM: ABC-2 type transporter~SPTR: ABC-type transport system%2C membrane protein%3B~IMG reference gene:2504918953 gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0088 Trebr_0089 Trebr_0089 Trebr_0089 98228 100441 + ABC-type uncharacterized transport system InterPro IPR019196~KEGG: ssm:Spirs_0359 ABC-type uncharacterized transport system~PFAM: ABC-type uncharacterised transport system~SPTR: ABC-type uncharacterized transport system%3B~IMG reference gene:2504918954~PFAM: ABC-type uncharacterized transport system gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0089 Trebr_0090 Trebr_0090 Trebr_0090 100438 101442 + hypothetical protein KEGG: ssm:Spirs_0358 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918955 gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0090 Trebr_0091 Trebr_0091 Trebr_0091 101569 103179 - Mannitol 2-dehydrogenase COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase~InterPro IPR013131:IPR013118~KEGG: eel:EUBELI_20594 fructuronate reductase~PFAM: Mannitol dehydrogenase%2C C-terminal%3B Mannitol dehydrogenase%2C N-terminal~PRIAM: Mannitol 2-dehydrogenase~SPTR: Mannitol dehydrogenase%3B~IMG reference gene:2504918956~PFAM: Mannitol dehydrogenase C-terminal domain%3B Mannitol dehydrogenase Rossmann domain gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0091 Trebr_0092 Trebr_0092 Trebr_0092 103191 104270 - Mannonate dehydratase COGs: COG1312 D-mannonate dehydratase~HAMAP: Mannonate dehydratase~InterPro IPR004628~KEGG: bpb:bpr_I0685 D-mannonate dehydratase UxuA~PFAM: Mannonate dehydratase~PRIAM: Mannonate dehydratase~SPTR: Mannonate dehydratase%3B~TIGRFAM: Mannonate dehydratase~IMG reference gene:2504918957~PFAM: D-mannonate dehydratase (UxuA)~TIGRFAM: mannonate dehydratase gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0092 Trebr_0093 Trebr_0093 Trebr_0093 104302 105600 - TRAP dicarboxylate transporter%2C DctM subunit COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component~InterPro IPR010656:IPR004681~KEGG: asu:Asuc_0368 TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: TRAP dicarboxylate transporter%2C DctM subunit%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~IMG reference gene:2504918958~PFAM: DctM-like transporters~TIGRFAM: TRAP transporter%2C DctM subunit gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0093 Trebr_0094 Trebr_0094 Trebr_0094 105645 106178 - Tripartite ATP-independent periplasmic transporter DctQ component COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component~InterPro IPR007387~KEGG: asu:Asuc_0367 tripartite ATP-independent periplasmic transporter DctQ~PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~SPTR: Tripartite ATP-independent periplasmic transporter DctQ component%3B~IMG reference gene:2504918959~PFAM: Tripartite ATP-independent periplasmic transporters%2C DctQ component gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0094 Trebr_0095 Trebr_0095 Trebr_0095 106294 107316 - TRAP dicarboxylate transporter%2C DctP subunit COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component~InterPro IPR018389:IPR004682~KEGG: asu:Asuc_0366 TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~SPTR: TRAP dicarboxylate transporter%2C DctP subunit%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~IMG reference gene:2504918960~PFAM: Bacterial extracellular solute-binding protein%2C family 7~TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor%2C DctP family gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0095 Trebr_0096 Trebr_0096 Trebr_0096 107621 108643 + L-threonine 3-dehydrogenase COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase~InterPro IPR013154:IPR013149~KEGG: bss:BSUW23_06280 putative oxidoreductase~PFAM: Alcohol dehydrogenase GroES-like%3B Alcohol dehydrogenase%2C zinc-binding~PRIAM: L-threonine 3-dehydrogenase~SPTR: YjmD%3B~IMG reference gene:2504918961~PFAM: Alcohol dehydrogenase GroES-like domain%3B Zinc-binding dehydrogenase~TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0096 Trebr_0097 Trebr_0097 Trebr_0097 108676 109692 + L-iditol 2-dehydrogenase COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase~InterPro IPR013154:IPR013149~KEGG: efe:EFER_2666 putative L-threonine 3-dehydrogenase~PFAM: Alcohol dehydrogenase GroES-like%3B Alcohol dehydrogenase%2C zinc-binding~PRIAM: L-iditol 2-dehydrogenase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918962~PFAM: Alcohol dehydrogenase GroES-like domain%3B Zinc-binding dehydrogenase gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0097 Trebr_0098 Trebr_0098 Trebr_0098 109784 110509 + transcriptional regulator%2C GntR family COGs: COG1802 Transcriptional regulators~InterPro IPR000524:IPR011711~KEGG: has:Halsa_0900 transcriptional regulator%2C GntR family~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR~SPTR: Regulatory protein%2C GntR family%3B~IMG reference gene:2504918963~PFAM: Bacterial regulatory proteins%2C gntR family%3B FCD domain gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0098 Trebr_0099 Trebr_0099 Trebr_0099 110623 111423 - Gluconate 5-dehydrogenase COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)~InterPro IPR002198~KEGG: bfs:BF0083 gluconate 5-dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR~PRIAM: Gluconate 5-dehydrogenase~SPTR: Oxidoreductase%2C short chain dehydrogenase/reductase family protein%3B~IMG reference gene:2504918964~PFAM: short chain dehydrogenase gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0099 Trebr_0100 Trebr_0100 Trebr_0100 111535 112005 - CheW protein COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545~KEGG: glo:Glov_1734 CheW protein~PFAM: CheW-like protein~SMART: CheW-like protein~SPTR: CheW protein%3B~IMG reference gene:2504918965~PFAM: CheW-like domain gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0100 Trebr_0101 Trebr_0101 Trebr_0101 112075 112572 - CheW protein COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545~KEGG: dma:DMR_23770 chemotaxis protein CheW~PFAM: CheW-like protein~SMART: CheW-like protein~SPTR: Chemotaxis protein CheW%3B~IMG reference gene:2504918966~PFAM: CheW-like domain gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0101 Trebr_0102 Trebr_0102 Trebr_0102 112589 112957 - response regulator receiver protein COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789~KEGG: gsu:GSU1289 chemotaxis protein CheY~PFAM: Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region~SPTR: Chemotaxis protein CheY%3B~IMG reference gene:2504918967~PFAM: Response regulator receiver domain gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0102 Trebr_0103 Trebr_0103 Trebr_0103 113101 114210 - response regulator receiver modulated CheB methylesterase COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain~HAMAP: Chemotaxis response regulator protein-glutamate methylesterase~InterPro IPR001789:IPR000673~KEGG: ssm:Spirs_1823 response regulator receiver modulated CheB methylesterase~PFAM: Signal transduction response regulator%2C chemotaxis%2C protein-glutamate methylesterase%3B Signal transduction response regulator%2C receiver region~PRIAM: Protein-glutamate methylesterase~SMART: Signal transduction response regulator%2C receiver region~SPTR: Response regulator receiver modulated CheB methylesterase%3B~IMG reference gene:2504918968~PFAM: CheB methylesterase%3B Response regulator receiver domain gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0103 Trebr_0104 Trebr_0104 Trebr_0104 114210 115064 - MCP methyltransferase%2C CheR-type COGs: COG1352 Methylase of chemotaxis methyl-accepting protein~InterPro IPR000780~KEGG: CheR-type MCP methyltransferase~PFAM: MCP methyltransferase%2C CheR-type~PRIAM: Protein-glutamate O-methyltransferase~SMART: MCP methyltransferase%2C CheR-type~SPTR: MCP methyltransferase%2C CheR-type%3B~IMG reference gene:2504918969~PFAM: CheR methyltransferase%2C SAM binding domain%3B CheR methyltransferase%2C all-alpha domain gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0104 Trebr_0105 Trebr_0105 Trebr_0105 115068 117230 - CheA signal transduction histidine kinase COGs: COG0643 Chemotaxis protein histidine kinase and related kinase~InterPro IPR008207:IPR003594:IPR002545:IPR004105~KEGG: ppd:Ppro_1607 CheA signal transduction histidine kinases~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup%2C homodimeric%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region%3B CheW-like protein~SMART: CheW-like protein%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region%3B ATP-binding region%2C ATPase-like~SPTR: CheA signal transduction histidine kinase%3B~IMG reference gene:2504918970~PFAM: CheW-like domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Signal transducing histidine kinase%2C homodimeric domain%3B Hpt domain gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0105 Trebr_0106 Trebr_0106 Trebr_0106 117223 117573 - hypothetical protein IMG reference gene:2504918971~PFAM: STAS domain gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0106 Trebr_0107 Trebr_0107 Trebr_0107 117731 118207 + CheW protein COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545~KEGG: mgm:Mmc1_3653 CheW protein~PFAM: CheW-like protein~SMART: CheW-like protein~SPTR: CheW protein%3B~IMG reference gene:2504918972~PFAM: CheW-like domain gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0107 Trebr_0108 Trebr_0108 Trebr_0108 118232 118825 - CheD COGs: COG1871 Chemotaxis protein%3B stimulates methylation of MCP protein~HAMAP: Chemoreceptor glutamine deamidase cheD~InterPro IPR005659~KEGG: sbl:Sbal_2116 chemoreceptor glutamine deamidase CheD~PFAM: Chemoreceptor glutamine deamidase cheD~PRIAM: Protein-glutamine glutaminase~SPTR: Probable chemoreceptor glutamine deamidase CheD%3B~IMG reference gene:2504918973~PFAM: CheD gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0108 Trebr_0109 Trebr_0109 Trebr_0109 118834 120597 - hypothetical protein KEGG: ssm:Spirs_0578 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918974 gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0109 Trebr_0110 Trebr_0110 Trebr_0110 120599 121585 - cobyrinic acid ac-diamide synthase COGs: COG0455 ATPase involved in chromosome partitioning~KEGG: ssm:Spirs_1797 cobyrinic acid ac-diamide synthase~SPTR: Cobyrinic acid ac-diamide synthase%3B~IMG reference gene:2504918975~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0110 Trebr_0111 Trebr_0111 Trebr_0111 121719 122840 - hypothetical protein KEGG: pin:Ping_1180 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918976~PFAM: Acyltransferase family gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0111 Trebr_0112 Trebr_0112 Trebr_0112 123042 123356 + helix-turn-helix domain protein InterPro IPR001387~KEGG: oca:OCAR_6455 hypothetical protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Conserved domain protein%3B~IMG reference gene:2504918977~PFAM: Helix-turn-helix gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0112 Trebr_0113 Trebr_0113 Trebr_0113 123486 124874 + Citrate synthase COGs: COG0372 Citrate synthase~InterPro IPR002020~KEGG: cth:Cthe_3027 citrate synthase~PFAM: Citrate synthase-like~SPTR: Citrate (Si)-synthase%3B~IMG reference gene:2504918978~PFAM: Citrate synthase gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0113 Trebr_0114 Trebr_0114 Trebr_0114 124919 127426 - hypothetical protein KEGG: tde:TDE1984 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918979 gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0114 Trebr_0115 Trebr_0115 Trebr_0115 127416 130433 - FecR protein InterPro IPR006860~KEGG: tde:TDE1985 hypothetical protein~PFAM: FecR protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504918980~PFAM: FecR protein gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0115 Trebr_0116 Trebr_0116 Trebr_0116 130393 132852 - adenylate/guanylate cyclase with integral membrane sensor COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR003660:IPR001054~KEGG: tde:TDE1986 adenylate cyclase%2C putative~PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase%3B HAMP linker domain~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase%3B HAMP linker domain~SPTR: Adenylate cyclase%3B~IMG reference gene:2504918981~PFAM: Adenylate and Guanylate cyclase catalytic domain%3B HAMP domain gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0116 Trebr_0117 Trebr_0117 Trebr_0117 132955 134145 + putative leucyl aminopeptidase COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T)~KEGG: sta:STHERM_c01250 putative leucyl aminopeptidase~SPTR: Putative leucyl aminopeptidase%3B~IMG reference gene:2504918982~PFAM: Thermophilic metalloprotease (M29) gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0117 Trebr_0118 Trebr_0118 Trebr_0118 134295 135239 - glycoside hydrolase family 42 domain 5 loop region InterPro IPR004199~PFAM: Glycoside hydrolase%2C family 42%2C domain 5~IMG reference gene:2504918983~PFAM: pfkB family carbohydrate kinase%3B Beta galactosidase small chain gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0118 Trebr_0119 Trebr_0119 Trebr_0119 135385 138552 - glycoside hydrolase family 2 TIM barrel COGs: COG3250 Beta-galactosidase/beta-glucuronidase~InterPro IPR006104:IPR006103:IPR004199~KEGG: rca:Rcas_2493 beta-galactosidase~PFAM: Glycoside hydrolase family 2%2C TIM barrel%3B Glycoside hydrolase family 2%2C carbohydrate-binding%3B Glycoside hydrolase%2C family 42%2C domain 5~SPTR: Glycoside hydrolase family 2 TIM barrel%3B~IMG reference gene:2504918984~PFAM: domain%3B Glycosyl hydrolases family 2%2C TIM barrel domain%3B Glycosyl hydrolases family 2%2C sugar binding domain%3B Beta galactosidase small chain gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0119 Trebr_0120 Trebr_0120 Trebr_0120 138719 140014 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: cpy:Cphy_3590 extracellular solute-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504918985~PFAM: Bacterial extracellular solute-binding protein gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0120 Trebr_0121 Trebr_0121 Trebr_0121 140127 141014 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: cpy:Cphy_3589 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504918986~PFAM: Binding-protein-dependent transport system inner membrane component gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0121 Trebr_0122 Trebr_0122 Trebr_0122 141001 141816 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: cpy:Cphy_3588 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504918987~PFAM: Binding-protein-dependent transport system inner membrane component gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0122 Trebr_0123 Trebr_0123 Trebr_0123 141818 142495 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR001789:IPR000792~KEGG: ssm:Spirs_4097 two component transcriptional regulator%2C LuxR family~PFAM: Signal transduction response regulator%2C receiver region%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region%3B Transcription regulator LuxR%2C C-terminal~SPTR: Two component transcriptional regulator%2C LuxR family%3B~IMG reference gene:2504918988~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0123 Trebr_0124 Trebr_0124 Trebr_0124 142485 143789 - putative signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594:IPR011712~KEGG: ssm:Spirs_1060 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 3%2C dimerisation and phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504918989~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0124 Trebr_0125 Trebr_0125 Trebr_0125 144013 145161 - lactaldehyde reductase COGs: COG1454 Alcohol dehydrogenase class IV~InterPro IPR001670:IPR013460~KEGG: eel:EUBELI_20348 L-1%2C2-propanediol oxidoreductase~PFAM: Alcohol dehydrogenase%2C iron-type~PRIAM: Lactaldehyde reductase~SPTR: Lactaldehyde reductase%3B~TIGRFAM: Lactaldehyde reductase~IMG reference gene:2504918990~PFAM: Iron-containing alcohol dehydrogenase~TIGRFAM: lactaldehyde reductase gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0125 Trebr_0126 Trebr_0126 Trebr_0126 145174 146958 - L-fucose isomerase COGs: COG2407 L-fucose isomerase and related protein~HAMAP: L-fucose isomerase~InterPro IPR012888:IPR012889:IPR015888:IPR005763~KEGG: cpe:CPE0318 L-fucose isomerase~PFAM: L-fucose isomerase%2C N-terminal-1%3B L-fucose isomerase%2C N-terminal-2%3B L-fucose isomerase-like%2C C-terminal~PRIAM: L-fucose isomerase~SPTR: L-fucose isomerase 1%3B~TIGRFAM: L-fucose isomerase~IMG reference gene:2504918991~PFAM: L-fucose isomerase%2C C-terminal domain%3B L-fucose isomerase%2C first N-terminal domain%3B L-fucose isomerase%2C second N-terminal domain~TIGRFAM: L-fucose isomerase gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0126 Trebr_0127 Trebr_0127 Trebr_0127 147166 148602 - Rhamnulokinase COGs: COG1070 Sugar (pentulose and hexulose) kinase~InterPro IPR018484:IPR018485~KEGG: cpf:CPF_1049 L-fuculokinase~PFAM: Carbohydrate kinase%2C FGGY%2C N-terminal%3B Carbohydrate kinase%2C FGGY%2C C-terminal~PRIAM: Rhamnulokinase~SPTR: Carbohydrate kinase%2C FGGY family protein%3B~IMG reference gene:2504918992~PFAM: FGGY family of carbohydrate kinases%2C N-terminal domain%3B FGGY family of carbohydrate kinases%2C C-terminal domain gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0127 Trebr_0128 Trebr_0128 Trebr_0128 148712 149416 - L-fuculose-phosphate aldolase COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase~InterPro IPR001303~KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase~PFAM: Class II aldolase/adducin%2C N-terminal~PRIAM: L-fuculose-phosphate aldolase~SPTR: L-fuculose phosphate aldolase%3B~IMG reference gene:2504918993~PFAM: Class II Aldolase and Adducin N-terminal domain gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0128 Trebr_0129 Trebr_0129 Trebr_0129 149567 150433 + transcriptional regulator with cupin sensor%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060:IPR013096:IPR000005~KEGG: ccb:Clocel_1498 transcriptional regulator%2C AraC family~PFAM: Helix-turn-helix%2C AraC type%3B Cupin 2%2C conserved barrel~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504918994~PFAM: Cupin domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0129 Trebr_0130 Trebr_0130 Trebr_0130 150721 151176 + RbsD or FucU transport COGs: COG4154 Fucose dissimilation pathway protein FucU~InterPro IPR007721~KEGG: tra:Trad_2112 RbsD or FucU transport~PFAM: RbsD/FucU transport~SPTR: RbsD or FucU transport%3B~IMG reference gene:2504918995~PFAM: RbsD / FucU transport protein family gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0130 Trebr_0131 Trebr_0131 Trebr_0131 151359 152438 + galactose-binding protein COGs: COG1879 ABC-type sugar transport system periplasmic component~KEGG: str:Sterm_1702 galactose-binding protein~SPTR: Putative mglB homolog%3B~IMG reference gene:2504918996 gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0131 Trebr_0132 Trebr_0132 Trebr_0132 152591 154093 + Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: pjd:Pjdr2_4330 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~IMG reference gene:2504918997~PFAM: ABC transporter gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0132 Trebr_0133 Trebr_0133 Trebr_0133 154118 155116 + ABC-type transporter%2C integral membrane subunit COGs: COG4211 ABC-type glucose/galactose transport system permease component~InterPro IPR001851~KEGG: str:Sterm_4009 inner-membrane translocator~PFAM: Bacterial inner-membrane translocator~SPTR: Putative sugar ABC transporter (Permease)%3B~IMG reference gene:2504918998~PFAM: Branched-chain amino acid transport system / permease component gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0133 Trebr_0134 Trebr_0134 Trebr_0134 155148 156131 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: ttr:Tter_2385 transcriptional regulator%2C LacI family~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504918999~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0134 Trebr_0135 Trebr_0135 Trebr_0135 156424 156798 - transcriptional regulator%2C MerR family COGs: COG0789 transcriptional regulator protein~InterPro IPR000551:IPR015358~KEGG: elm:ELI_1032 MerR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MerR%3B Transcription regulator MerR%2C DNA binding~SMART: HTH transcriptional regulator%2C MerR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919000~PFAM: MerR%2C DNA binding%3B MerR family regulatory protein gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0135 Trebr_0136 Trebr_0136 Trebr_0136 157120 158895 - 1-deoxy-D-xylulose-5-phosphate synthase COGs: COG1154 Deoxyxylulose-5-phosphate synthase~InterPro IPR005475:IPR005476~KEGG: cac:CA_P0106 1-deoxy-D-xylulose-5-phosphate synthase~PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase~SPTR: 1-deoxyxylulose-5-phosphate synthase%2C dehydrogenase%3B~IMG reference gene:2504919001~PFAM: Transketolase%2C thiamine diphosphate binding domain%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0136 Trebr_0137 Trebr_0137 Trebr_0137 159199 160206 + uncharacterized Fe-S center protein%2C putative ferredoxin COGs: COG2768 Uncharacterized Fe-S center protein~KEGG: pdi:BDI_0351 uncharacterized Fe-S center protein%2C putative ferredoxin~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919002 gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0137 Trebr_0138 Trebr_0138 Trebr_0138 160218 161213 + Protein of unknown function DUF318%2C transmembrane COGs: COG0701 permease~InterPro IPR005524~KEGG: mac:MA0366 hypothetical protein~PFAM: Protein of unknown function DUF318%2C transmembrane~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919003~PFAM: Predicted permease gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0138 Trebr_0139 Trebr_0139 Trebr_0139 161314 162510 - solute carrier family 1 (glial high affinity glutamate transporter)%2C member 2 COGs: COG1301 Na+/H+-dicarboxylate symporter~KEGG: eel:EUBELI_01747 solute carrier family 1 (glial high affinity glutamate transporter)%2C member 2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919004~PFAM: Sodium:dicarboxylate symporter family gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0139 Trebr_0140 Trebr_0140 Trebr_0140 162637 163926 - UPF0597 protein yhaM COGs: COG3681 conserved hypothetical protein~HAMAP: Uncharacterised protein family UPF0597~InterPro IPR010469~KEGG: csh:Closa_0439 protein of unknown function DUF1063~SPTR: UPF0597 protein CLOBOL_05336%3B~IMG reference gene:2504919005~PFAM: Serine dehydratase alpha chain gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0140 Trebr_0141 Trebr_0141 Trebr_0141 164198 165094 + transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: csh:Closa_0440 transcriptional regulator%2C LysR family~PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~SPTR: Transcriptional regulator%2C LysR family%3B~IMG reference gene:2504919006~PFAM: LysR substrate binding domain%3B Bacterial regulatory helix-turn-helix protein%2C lysR family gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0141 Trebr_0142 Trebr_0142 Trebr_0142 165191 166279 + RNA binding S1 domain protein COGs: COG0539 Ribosomal protein S1~InterPro IPR003029~KEGG: gur:Gura_2939 30S ribosomal protein S1~PFAM: Ribosomal protein S1%2C RNA binding domain~SPTR: SSU ribosomal protein S1P%3B~IMG reference gene:2504919007~PFAM: S1 RNA binding domain gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0142 Trebr_0143 Trebr_0143 Trebr_0143 166509 167342 + transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060:IPR000005:IPR010499~KEGG: csh:Closa_1152 transcriptional regulator%2C AraC family~PFAM: Helix-turn-helix%2C AraC type%3B Bacterial transcription activator%2C effector binding~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504919008~PFAM: Bacterial transcription activator%2C effector binding domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0143 Trebr_0144 Trebr_0144 Trebr_0144 167457 168012 - pseudogene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0144 Trebr_0145 Trebr_0145 Trebr_0145 168041 168508 - hypothetical protein KEGG: cdl:CDR20291_0527 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919010 gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0145 Trebr_0146 Trebr_0146 Trebr_0146 168585 168914 - transcriptional modulator of MazE/toxin%2C MazF COGs: COG2337 Growth inhibitor~InterPro IPR003477~KEGG: tde:TDE2247 PemK family protein~PFAM: PemK-like protein~SPTR: PemK family protein%3B~IMG reference gene:2504919011~PFAM: PemK-like protein gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0146 Trebr_0147 Trebr_0147 Trebr_0147 168902 169150 - SpoVT/AbrB domain-containing protein InterPro IPR007159~KEGG: ssm:Spirs_0703 transcriptional regulator/antitoxin%2C MazE~PFAM: Transcription regulator AbrB/SpoV%2C predicted~SPTR: Transcriptional regulator/antitoxin%2C MazE%3B~IMG reference gene:2504919012~PFAM: SpoVT / AbrB like domain gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0147 Trebr_0148 Trebr_0148 Trebr_0148 169366 170496 + transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: bpb:bpr_IV010 IS110 family transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504919013~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0148 Trebr_0149 Trebr_0149 Trebr_0149 170766 171509 - NERD domain protein InterPro IPR011528:IPR013498~KEGG: zpr:ZPR_4418 hypothetical membrane protein~PFAM: NERD%3B DNA topoisomerase%2C type IA%2C zn finger~SPTR: Hypothetical membrane protein%3B~IMG reference gene:2504919014~PFAM: Nuclease-related domain%3B Topoisomerase DNA binding C4 zinc finger gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0149 Trebr_0150 Trebr_0150 Trebr_0150 171510 171962 - hypothetical protein IMG reference gene:2504919015 gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0150 Trebr_0151 Trebr_0151 Trebr_0151 172260 172481 - protein of unknown function DUF1697 InterPro IPR012545~KEGG: csh:Closa_3141 protein of unknown function DUF1697~PFAM: Protein of unknown function DUF1697~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919016~PFAM: Protein of unknown function (DUF1697) gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0151 Trebr_0152 Trebr_0152 Trebr_0152 172524 172817 - pseudogene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0152 Trebr_0153 Trebr_0153 Trebr_0153 173407 174729 + multi antimicrobial extrusion protein MatE COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: csh:Closa_1153 multi antimicrobial extrusion protein MatE~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Multi antimicrobial extrusion protein MatE%3B~IMG reference gene:2504919018~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0153 Trebr_0154 Trebr_0154 Trebr_0154 174905 175804 - Methyltransferase type 11 InterPro IPR013216~KEGG: bth:BT_2972 hypothetical protein~PFAM: Methyltransferase type 11~SPTR: SAM-dependent methyltransferase%3B~IMG reference gene:2504919019~PFAM: Methyltransferase domain gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0154 Trebr_0155 Trebr_0155 Trebr_0155 175929 176210 - hypothetical protein KEGG: cpr:CPR_0719 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919020 gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0155 Trebr_0156 Trebr_0156 Trebr_0156 176441 176587 - pseudogene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0156 Trebr_0157 Trebr_0157 Trebr_0157 176739 177431 + aspartate racemase COGs: COG1794 Aspartate racemase~InterPro IPR015942:IPR004380~KEGG: cbe:Cbei_3176 aspartate racemase~PFAM: Asp/Glu/hydantoin racemase~SPTR: Aspartate racemase%3B~TIGRFAM: Aspartate racemase~IMG reference gene:2504919022~PFAM: Asp/Glu/Hydantoin racemase~TIGRFAM: aspartate racemase gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0157 Trebr_0158 Trebr_0158 Trebr_0158 177528 177854 - TfoX domain-containing protein InterPro IPR007076~KEGG: shi:Shel_09460 regulator of competence-specific genes~PFAM: TfoX%2C N-terminal~SPTR: TfoX N-terminal domain family protein%3B~IMG reference gene:2504919023~PFAM: TfoX N-terminal domain gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0158 Trebr_0159 Trebr_0159 Trebr_0159 177872 178237 - hypothetical protein KEGG: ccb:Clocel_2348 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919024 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0159 Trebr_0160 Trebr_0160 Trebr_0160 178536 178820 + hypothetical protein KEGG: cce:Ccel_2739 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919025 gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0160 Trebr_0161 Trebr_0161 Trebr_0161 178826 179698 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: bpb:bpr_I0998 GNAT family acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Acetyltransferase GNAT family%3B~IMG reference gene:2504919026~PFAM: Acetyltransferase (GNAT) family gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0161 Trebr_0162 Trebr_0162 Trebr_0162 179736 180848 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG2768 Uncharacterized Fe-S center protein~InterPro IPR001450~KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein%3B~IMG reference gene:2504919027~PFAM: 4Fe-4S binding domain%3B Domain of unknown function (DUF362) gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0162 Trebr_0163 Trebr_0163 Trebr_0163 180891 182651 - integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003661:IPR003594~KEGG: sus:Acid_1102 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504919028~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0163 Trebr_0164 Trebr_0164 Trebr_0164 182825 183253 + hypothetical protein IMG reference gene:2504919029 gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0164 Trebr_0165 Trebr_0165 Trebr_0165 183386 184102 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: aba:Acid345_3061 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2504919030~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0165 Trebr_0166 Trebr_0166 Trebr_0166 184107 185417 - major facilitator superfamily MFS_1 COGs: COG0738 Fucose permease~InterPro IPR011701~KEGG: amt:Amet_3781 major facilitator transporter~PFAM: Major facilitator superfamily MFS-1~SPTR: Major facilitator superfamily MFS_1%3B~IMG reference gene:2504919031~PFAM: Major Facilitator Superfamily gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0166 Trebr_0167 Trebr_0167 Trebr_0167 185458 187332 - integral membrane sensor signal transduction histidine kinase COGs: COG5002 Signal transduction histidine kinase~InterPro IPR003660:IPR003661:IPR003594~KEGG: ssm:Spirs_1696 multi-sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain~SPTR: Multi-sensor signal transduction histidine kinase%3B~IMG reference gene:2504919032~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0167 Trebr_0168 Trebr_0168 Trebr_0168 187319 188065 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: sta:STHERM_c05370 transcriptional regulatory protein~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region~SPTR: Transcriptional regulatory protein%3B~IMG reference gene:2504919033~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0168 Trebr_0169 Trebr_0169 Trebr_0169 188409 189278 + phosphate binding protein COGs: COG0226 ABC-type phosphate transport system periplasmic component~InterPro IPR006059:IPR011862~KEGG: ssm:Spirs_1702 phosphate binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Phosphate binding protein%3B~TIGRFAM: Phosphate binding protein~IMG reference gene:2504919034~TIGRFAM: phosphate binding protein gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0169 Trebr_0170 Trebr_0170 Trebr_0170 189474 190628 + Radical SAM domain protein COGs: COG0535 Fe-S oxidoreductase~InterPro IPR007197~KEGG: bpb:bpr_I2638 radical SAM domain-containing protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504919035~PFAM: Radical SAM superfamily gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0170 Trebr_0171 Trebr_0171 Trebr_0171 190625 191359 + regulatory protein TetR InterPro IPR001647~KEGG: cpy:Cphy_1864 TetR family transcriptional regulator~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919036~PFAM: Bacterial regulatory proteins%2C tetR family gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0171 Trebr_0172 Trebr_0172 Trebr_0172 191344 191814 - bacterioferritin COGs: COG2193 Bacterioferritin (cytochrome b1)~InterPro IPR008331:IPR002024~KEGG: gme:Gmet_1908 bacterioferritin~PFAM: Ferritin/Dps protein~SPTR: Bacterioferritin%3B~TIGRFAM: Bacterioferritin~IMG reference gene:2504919037~PFAM: Ferritin-like domain~TIGRFAM: bacterioferritin gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0172 Trebr_0173 Trebr_0173 Trebr_0173 192019 192921 + phosphate ABC transporter%2C inner membrane subunit PstC COGs: COG0573 ABC-type phosphate transport system permease component~InterPro IPR000515:IPR011864~KEGG: ssm:Spirs_1701 phosphate ABC transporter%2C inner membrane subunit PstC~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Phosphate ABC transporter%2C inner membrane subunit PstC%3B~TIGRFAM: Phosphate ABC transporter%2C permease protein PstC~IMG reference gene:2504919038~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: phosphate ABC transporter%2C permease protein PstC%3B phosphate ABC transporter%2C permease protein PstA gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0173 Trebr_0174 Trebr_0174 Trebr_0174 192921 194600 + phosphate ABC transporter%2C inner membrane subunit PstA COGs: COG0581 ABC-type phosphate transport system permease component~InterPro IPR000515:IPR005672~KEGG: ssm:Spirs_1700 phosphate ABC transporter%2C inner membrane subunit PstA~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Phosphate ABC transporter%2C inner membrane subunit PstA%3B~TIGRFAM: Phosphate transport system permease protein 2~IMG reference gene:2504919039~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: phosphate ABC transporter%2C permease protein PstA gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0174 Trebr_0175 Trebr_0175 Trebr_0175 194657 195496 + protein of unknown function DUF1113 COGs: COG4905 membrane protein~InterPro IPR010540~KEGG: cce:Ccel_0197 protein of unknown function DUF1113~PFAM: Protein of unknown function DUF1113~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919040~PFAM: Protein of unknown function (DUF1113) gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0175 Trebr_0176 Trebr_0176 Trebr_0176 195555 196427 - hypothetical protein KEGG: bpo:BP951000_1114 hypothetical protein~IMG reference gene:2504919041 gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0176 Trebr_0177 Trebr_0177 Trebr_0177 196476 197051 + hypothetical protein KEGG: alv:Alvin_1609 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919042 gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0177 Trebr_0178 Trebr_0178 Trebr_0178 197138 198172 - aromatic amino acid beta-eliminating lyase/threonine aldolase COGs: COG2008 Threonine aldolase~InterPro IPR001597~KEGG: ppy:PPE_04154 threonine aldolase~PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919043~PFAM: Beta-eliminating lyase gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0178 Trebr_0179 Trebr_0179 Trebr_0179 198169 198819 - Imidazoleglycerol-phosphate dehydratase COGs: COG0131 Imidazoleglycerol-phosphate dehydratase~HAMAP: Imidazoleglycerol-phosphate dehydratase~InterPro IPR000807~KEGG: lcz:LCAZH_1420 imidazoleglycerol-phosphate dehydratase~PFAM: Imidazoleglycerol-phosphate dehydratase~PRIAM: Imidazoleglycerol-phosphate dehydratase~SPTR: Imidazoleglycerol-phosphate dehydratase%3B~IMG reference gene:2504919044~PFAM: Imidazoleglycerol-phosphate dehydratase gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0179 Trebr_0180 Trebr_0180 Trebr_0180 198844 199698 - ATP phosphoribosyltransferase COGs: COG0040 ATP phosphoribosyltransferase~HAMAP: Histidine biosynthesis HisG%2C ATP phosphoribosyltransferase%2C subgroup~InterPro IPR013820:IPR013115:IPR020621~KEGG: kko:Kkor_0854 ATP phosphoribosyltransferase~PFAM: ATP phosphoribosyltransferase%2C catalytic region%3B Histidine biosynthesis HisG%2C C-terminal~PRIAM: ATP phosphoribosyltransferase~SPTR: ATP phosphoribosyltransferase%3B~TIGRFAM: ATP phosphoribosyltransferase%2C catalytic region%3B Histidine biosynthesis HisG%2C C-terminal~IMG reference gene:2504919045~PFAM: HisG%2C C-terminal domain%3B ATP phosphoribosyltransferase~TIGRFAM: ATP phosphoribosyltransferase%2C C-terminal domain%3B ATP phosphoribosyltransferase gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0180 Trebr_0181 Trebr_0181 Trebr_0181 200203 201390 + sodium/hydrogen exchanger COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter~InterPro IPR006153~KEGG: cdf:CD0657 putative Na(+)/H(+) antiporter~PFAM: Cation/H+ exchanger~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919046~PFAM: Sodium/hydrogen exchanger family gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0181 Trebr_0182 Trebr_0182 Trebr_0182 201540 202538 - protein of unknown function DUF88 InterPro IPR002790~KEGG: ssm:Spirs_3345 hypothetical protein~PFAM: Protein of unknown function DUF88~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919047~PFAM: Protein of unknown function DUF88 gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0182 Trebr_0183 Trebr_0183 Trebr_0183 202601 203233 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: psl:Psta_3609 tetratricopeptide TPR_2 repeat protein~PFAM: Tetratricopeptide TPR-1~SPTR: Tetratricopeptide TPR_2 repeat protein%3B~IMG reference gene:2504919048~PFAM: Tetratricopeptide repeat gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0183 Trebr_0184 Trebr_0184 Trebr_0184 203553 205403 + coagulation factor 5/8 type domain protein InterPro IPR000421~KEGG: sta:STHERM_c15300 hypothetical protein~PFAM: Coagulation factor 5/8 type%2C C-terminal~SMART: Coagulation factor 5/8 type%2C C-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919049~PFAM: F5/8 type C domain%3B Glycosyl hydrolase family 71 gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0184 Trebr_0185 Trebr_0185 Trebr_0185 205616 206347 + hypothetical protein KEGG: sta:STHERM_c15290 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919050 gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0185 Trebr_0186 Trebr_0186 Trebr_0186 206419 207894 + hypothetical protein KEGG: sta:STHERM_c15280 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919051 gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0186 Trebr_0187 Trebr_0187 Trebr_0187 207929 209320 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: sta:STHERM_c15360 extracellular solute-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein%3B~IMG reference gene:2504919052~PFAM: Bacterial extracellular solute-binding protein gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0187 Trebr_0188 Trebr_0188 Trebr_0188 209497 210369 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: sta:STHERM_c15350 transporter~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Transporter%3B~IMG reference gene:2504919053~PFAM: Binding-protein-dependent transport system inner membrane component gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0188 Trebr_0189 Trebr_0189 Trebr_0189 210382 211263 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: sta:STHERM_c15340 transporter~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Carbohydrate ABC transporter membrane protein 2%2C CUT1 family%3B~IMG reference gene:2504919054~PFAM: Binding-protein-dependent transport system inner membrane component gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0189 Trebr_0190 Trebr_0190 Trebr_0190 211281 213638 + Kojibiose phosphorylase COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase)~InterPro IPR005196:IPR005195:IPR005194~KEGG: sta:STHERM_c15330 kojibiose phosphorylase~PFAM: Glycoside hydrolase family 65%2C central catalytic%3B Glycoside hydrolase family 65%2C N-terminal%3B Glycoside hydrolase%2C family 65%2C C-terminal~PRIAM: Kojibiose phosphorylase~SPTR: Kojibiose phosphorylase%3B~IMG reference gene:2504919055~PFAM: Glycosyl hydrolase family 65%2C C-terminal domain%3B Glycosyl hydrolase family 65 central catalytic domain%3B Glycosyl hydrolase family 65%2C N-terminal domain gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0190 Trebr_0191 Trebr_0191 Trebr_0191 213635 215995 + Kojibiose phosphorylase COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase)~InterPro IPR005196:IPR005195~KEGG: sta:STHERM_c15320 kojibiose phosphorylase~PFAM: Glycoside hydrolase family 65%2C central catalytic%3B Glycoside hydrolase family 65%2C N-terminal~PRIAM: Kojibiose phosphorylase~SPTR: Glycoside hydrolase family 65 central catalytic%3B~IMG reference gene:2504919056~PFAM: Glycosyl hydrolase family 65%2C N-terminal domain%3B Glycosyl hydrolase family 65 central catalytic domain gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0191 Trebr_0192 Trebr_0192 Trebr_0192 215983 216618 + beta-phosphoglucomutase COGs: COG0637 phosphatase/phosphohexomutase~InterPro IPR005834:IPR010972:IPR010976:IPR006402~KEGG: sta:STHERM_c15310 hypothetical protein~PFAM: Haloacid dehalogenase-like hydrolase~PRIAM: Beta-phosphoglucomutase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Beta-phosphoglucomutase%3B Beta-phosphoglucomutase hydrolase%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~IMG reference gene:2504919057~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED%3B beta-phosphoglucomutase%3B beta-phosphoglucomutase family hydrolase gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0192 Trebr_0193 Trebr_0193 Trebr_0193 216643 217659 - transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: cpy:Cphy_3312 LacI family transcription regulator~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504919058~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0193 Trebr_0194 Trebr_0194 Trebr_0194 217938 218306 + response regulator receiver protein COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789~KEGG: dno:DNO_0868 two-component response regulator~PFAM: Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919059~PFAM: Response regulator receiver domain gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0194 Trebr_0195 Trebr_0195 Trebr_0195 218475 218921 + hypothetical protein KEGG: sta:STHERM_c03610 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919060 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0195 Trebr_0196 Trebr_0196 Trebr_0196 218937 221714 + multi-sensor signal transduction histidine kinase COGs: COG0004 Ammonia permease~InterPro IPR003594:IPR001905:IPR008207~KEGG: sta:STHERM_c03600 putative ammonia permease with sensory box/GGDEF domains~PFAM: Ammonium transporter%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region%3B ATP-binding region%2C ATPase-like~SMART: ATP-binding region%2C ATPase-like~SPTR: Probable ammonia permease with sensory box/GGDEF domains%3B~TIGRFAM: Ammonium transporter~IMG reference gene:2504919061~PFAM: Ammonium Transporter Family%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Hpt domain~TIGRFAM: ammonium transporter gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0196 Trebr_0197 Trebr_0197 Trebr_0197 222228 223112 - transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: bmq:BMQ_3743 transcriptional regulator%2C LysR family~PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~SPTR: Transcriptional regulator%2C LysR family%3B~IMG reference gene:2504919062~PFAM: LysR substrate binding domain%3B Bacterial regulatory helix-turn-helix protein%2C lysR family gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0197 Trebr_0198 Trebr_0198 Trebr_0198 223265 224119 - transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: afn:Acfer_0523 transcriptional regulator%2C LysR family~PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~SPTR: Transcriptional regulator%3B~IMG reference gene:2504919063~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family%3B LysR substrate binding domain gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0198 Trebr_0199 Trebr_0199 Trebr_0199 224208 224687 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: csh:Closa_3290 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919064~PFAM: Acetyltransferase (GNAT) family gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0199 Trebr_0200 Trebr_0200 Trebr_0200 225064 226098 - acyltransferase 3 COGs: COG3274 conserved hypothetical protein~InterPro IPR002656~KEGG: ssm:Spirs_0710 hypothetical protein~PFAM: Acyltransferase 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919065~PFAM: Acyltransferase family gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0200 Trebr_0201 Trebr_0201 Trebr_0201 226268 226612 + helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE2445 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504919066~PFAM: Helix-turn-helix gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0201 Trebr_0202 Trebr_0202 Trebr_0202 226650 227210 - protein of unknown function DUF419 KEGG: str:Sterm_3350 protein of unknown function DUF419~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919067 gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0202 Trebr_0203 Trebr_0203 Trebr_0203 227677 228543 + 2%2C5-didehydrogluconate reductase COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase~InterPro IPR001395~KEGG: ccb:Clocel_1467 2%2C5-didehydrogluconate reductase~PFAM: Aldo/keto reductase~PRIAM: 2%2C5-didehydrogluconate reductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919068~PFAM: Aldo/keto reductase family gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0203 Trebr_0204 Trebr_0204 Trebr_0204 228688 229245 + flavodoxin KEGG: ccv:CCV52592_1956 flavodoxin~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919069 gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0204 Trebr_0205 Trebr_0205 Trebr_0205 229290 229775 + pseudogene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0205 Trebr_0206 Trebr_0206 Trebr_0206 229934 230449 + flavodoxin KEGG: afn:Acfer_0531 flavodoxin~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919071~PFAM: NADPH-dependent FMN reductase gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0206 Trebr_0207 Trebr_0207 Trebr_0207 230484 230954 + hypothetical protein KEGG: tde:TDE0356 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504919072 gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0207 Trebr_0208 Trebr_0208 Trebr_0208 231117 231650 + flavodoxin KEGG: hhe:HH1031 flavodoxin~SPTR: Flavodoxin%3B~IMG reference gene:2504919073~PFAM: Flavodoxin-like fold gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0208 Trebr_0209 Trebr_0209 Trebr_0209 231647 232612 + Aryl-alcohol dehydrogenase (NADP(+)) COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase)~InterPro IPR001395~KEGG: ttm:Tthe_0870 aldo/keto reductase~PFAM: Aldo/keto reductase~PRIAM: Aryl-alcohol dehydrogenase (NADP(+))~SPTR: Aldo/keto reductase%3B~IMG reference gene:2504919074~PFAM: Aldo/keto reductase family gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0209 Trebr_0210 Trebr_0210 Trebr_0210 232710 233297 + protein of unknown function DUF323 KEGG: fsu:Fisuc_1693 protein of unknown function DUF323~SPTR: Conserved domain protein%3B~IMG reference gene:2504919075~PFAM: Flavodoxin-like fold gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0210 Trebr_0211 Trebr_0211 Trebr_0211 233340 234233 + Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: fsu:Fisuc_1693 protein of unknown function DUF323~PFAM: Sulphatase-modifying factor~SPTR: Serine/threonine-protein kinase Pkn1%3B~IMG reference gene:2504919076~PFAM: Formylglycine-generating sulfatase enzyme gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0211 Trebr_0212 Trebr_0212 Trebr_0212 234246 234386 + hypothetical protein IMG reference gene:2504919077 gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0212 Trebr_0213 Trebr_0213 Trebr_0213 234383 235045 + Holliday junction ATP-dependent DNA helicase RuvA KEGG: fsu:Fisuc_1692 Holliday junction ATP-dependent DNA helicase RuvA~SPTR: Holliday junction ATP-dependent DNA helicase RuvA%3B~IMG reference gene:2504919078 gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0213 Trebr_0214 Trebr_0214 Trebr_0214 235309 235518 + hypothetical protein IMG reference gene:2504919079 gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0214 Trebr_0215 Trebr_0215 Trebr_0215 235786 237036 + regulatory protein TetR InterPro IPR001647~KEGG: ssm:Spirs_0035 transcriptional regulator%2C TetR family~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%2C TetR family%3B~IMG reference gene:2504919080~PFAM: Bacterial regulatory proteins%2C tetR family gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0215 Trebr_0216 Trebr_0216 Trebr_0216 237178 238554 + outer membrane efflux protein COGs: COG1538 Outer membrane protein~InterPro IPR003423~KEGG: ssm:Spirs_0036 outer membrane efflux protein~PFAM: Outer membrane efflux protein~SPTR: Outer membrane efflux protein%3B~IMG reference gene:2504919081~PFAM: Outer membrane efflux protein gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0216 Trebr_0217 Trebr_0217 Trebr_0217 238567 239496 + efflux transporter%2C RND family%2C MFP subunit COGs: COG0845 Membrane-fusion protein~InterPro IPR006143~KEGG: ssm:Spirs_0037 efflux transporter%2C RND family%2C MFP subunit~PFAM: Secretion protein HlyD~SPTR: Efflux transporter%2C RND family%2C MFP subunit%3B~TIGRFAM: Secretion protein HlyD~IMG reference gene:2504919082~TIGRFAM: RND family efflux transporter%2C MFP subunit gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0217 Trebr_0218 Trebr_0218 Trebr_0218 239497 242814 + acriflavin resistance protein COGs: COG0841 Cation/multidrug efflux pump~InterPro IPR001036~KEGG: ssm:Spirs_0038 acriflavin resistance protein~PFAM: Acriflavin resistance protein~SPTR: Acriflavin resistance protein%3B~IMG reference gene:2504919083~PFAM: AcrB/AcrD/AcrF family~TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)%3B The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0218 Trebr_0219 Trebr_0219 Trebr_0219 242804 243187 + hypothetical protein KEGG: sta:STHERM_c21680 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919084 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0219 Trebr_0220 Trebr_0220 Trebr_0220 243369 245282 + hypothetical protein KEGG: ccb:Clocel_3315 regulator of chromosome condensation RCC1~SPTR: Regulator of chromosome condensation RCC1%3B~IMG reference gene:2504919085 gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0220 Trebr_0221 Trebr_0221 Trebr_0221 245382 248243 - peptidase M16 domain protein COGs: COG0612 Zn-dependent peptidase~InterPro IPR011765:IPR007863~KEGG: dfe:Dfer_4913 peptidase M16 domain protein~PFAM: Peptidase M16%2C N-terminal%3B Peptidase M16%2C C-terminal~SPTR: Peptidase M16 domain protein%3B~IMG reference gene:2504919086~PFAM: Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0221 Trebr_0222 Trebr_0222 Trebr_0222 248409 248918 + hypothetical protein COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family~KEGG: ckr:CKR_2518 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919087~PFAM: Flavin reductase like domain gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0222 Trebr_0223 Trebr_0223 Trebr_0223 248984 250726 + Xenobiotic-transporting ATPase COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR003593:IPR001140:IPR003439~KEGG: ipo:Ilyop_1313 ABC transporter related protein~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504919088~PFAM: ABC transporter%3B ABC transporter transmembrane region gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0223 Trebr_0224 Trebr_0224 Trebr_0224 251029 252789 - ATP-binding cassette protein%2C ChvD family COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003593:IPR003439~KEGG: glo:Glov_2441 putative ABC transporter ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~TIGRFAM: ATP-binding cassette protein%2C ChvD family~IMG reference gene:2504919089~PFAM: ABC transporter~TIGRFAM: ATP-binding cassette protein%2C ChvD family gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0224 Trebr_0225 Trebr_0225 Trebr_0225 252949 253371 - hypothetical protein IMG reference gene:2504919090 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0225 Trebr_0226 Trebr_0226 Trebr_0226 253469 253975 - Protein of unknown function DUF2147 InterPro IPR019223~KEGG: tde:TDE1857 hypothetical protein~PFAM: Protein of unknown function DUF2147~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919091~PFAM: Uncharacterized protein conserved in bacteria (DUF2147) gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0226 Trebr_0227 Trebr_0227 Trebr_0227 253995 256172 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: ssm:Spirs_3246 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2504919092~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0227 Trebr_0228 Trebr_0228 Trebr_0228 256337 257098 - hypothetical protein KEGG: tde:TDE0098 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504919093~PFAM: Protein of unknown function (DUF3298) gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0228 Trebr_0229 Trebr_0229 Trebr_0229 257291 257521 + nitrogen-fixing NifU domain-containing protein COGs: COG0694 Thioredoxin-like protein and domains~InterPro IPR001075~KEGG: ssm:Spirs_4302 nitrogen-fixing NifU domain protein~PFAM: NIF system FeS cluster assembly%2C NifU%2C C-terminal~SPTR: NifU-like protein%3B~IMG reference gene:2504919094~PFAM: NifU-like domain gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0229 Trebr_0230 Trebr_0230 Trebr_0230 257554 258105 + Peptidylprolyl isomerase COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2~InterPro IPR001179~KEGG: tde:TDE1925 peptidyl-prolyl cis-trans isomerase%2C FKBP-type~PFAM: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~PRIAM: Peptidylprolyl isomerase~SPTR: Peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2504919095~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0230 Trebr_0231 Trebr_0231 Trebr_0231 258123 258737 - Shikimate kinase COGs: COG0703 Shikimate kinase~HAMAP: Shikimate kinase~InterPro IPR000623~KEGG: sta:STHERM_c05910 shikimate kinase~PFAM: Shikimate kinase~SPTR: Shikimate kinase%3B~IMG reference gene:2504919096~PFAM: Shikimate kinase gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0231 Trebr_0232 Trebr_0232 Trebr_0232 258791 259441 + hypothetical protein KEGG: oih:OB1807 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919097 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0232 Trebr_0233 Trebr_0233 Trebr_0233 259365 261788 - diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160~KEGG: cdf:CD1841 putative signaling protein~PFAM: Diguanylate cyclase%2C predicted~SMART: Diguanylate cyclase%2C predicted~SPTR: Putative diguanylate cyclase%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504919098~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0233 Trebr_0234 Trebr_0234 Trebr_0234 261865 262512 - hypothetical protein KEGG: clj:CLJU_c26850 hypothetical protein~SPTR: Putative membrane protein%3B~IMG reference gene:2504919099 gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0234 Trebr_0235 Trebr_0235 Trebr_0235 262594 263445 - ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: clj:CLJU_c26860 ABC transporter ATPase~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504919100~PFAM: ABC transporter gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0235 Trebr_0236 Trebr_0236 Trebr_0236 263432 263683 - transcriptional regulator%2C AbrB family InterPro IPR007159:IPR006339~KEGG: dhd:Dhaf_1655 transcriptional regulator%2C AbrB family~PFAM: Transcription regulator AbrB/SpoV%2C predicted~SPTR: Transcriptional regulator%2C AbrB family%3B~TIGRFAM: Transcription regulator AbrB~IMG reference gene:2504919101~PFAM: SpoVT / AbrB like domain~TIGRFAM: looped-hinge helix DNA binding domain%2C AbrB family gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0236 Trebr_0237 Trebr_0237 Trebr_0237 263755 264048 - Phosphotransferase system EIIB/cysteine%2C phosphorylation site InterPro IPR018113~KEGG: lgs:LEGAS_0034 PTS system sucrose-specific transporter subunit EIIBC~PFAM: Phosphotransferase system EIIB/cysteine%2C phosphorylation site~SPTR: Phosphotransferase system maltose-specific enzyme IICB component%3B~IMG reference gene:2504919102~PFAM: phosphotransferase system%2C EIIB gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0237 Trebr_0238 Trebr_0238 Trebr_0238 264045 265715 - phosphoenolpyruvate-protein phosphotransferase COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component)~InterPro IPR008731:IPR008279:IPR000121:IPR006318~KEGG: PTS system enzyme I~PFAM: PEP-utilising enzyme%3B Phosphotransferase system%2C PEP-utilising enzyme%2C N-terminal%3B PEP-utilising enzyme%2C mobile region~PRIAM: Phosphoenolpyruvate--protein phosphotransferase~SPTR: Phosphoenolpyruvate--protein phosphotransferase%3B~TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase~IMG reference gene:2504919103~PFAM: PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C mobile domain%3B PEP-utilising enzyme%2C N-terminal~TIGRFAM: phosphoenolpyruvate-protein phosphotransferase gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0238 Trebr_0239 Trebr_0239 Trebr_0239 265716 265973 - Phosphotransferase system%2C phosphocarrier protein HPr COGs: COG1925 Phosphotransferase system HPr-related protein~InterPro IPR005698~KEGG: cpy:Cphy_1769 phosphotransferase system%2C phosphocarrier protein HPr~PFAM: Phosphotransferase system%2C phosphocarrier HPr protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phosphotransferase system%2C phosphocarrier HPr protein~IMG reference gene:2504919104~PFAM: PTS HPr component phosphorylation site~TIGRFAM: Phosphotransferase System HPr (HPr) Family gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0239 Trebr_0240 Trebr_0240 Trebr_0240 265978 266820 - transcriptional antiterminator%2C BglG COGs: COG3711 Transcriptional antiterminator~InterPro IPR004341:IPR011608~KEGG: bld:BLi04201 LicT~PFAM: CAT RNA-binding region%3B PRD~SPTR: Putative transcription antiterminator LicT%3B~IMG reference gene:2504919105~PFAM: CAT RNA binding domain%3B PRD domain gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0240 Trebr_0241 Trebr_0241 Trebr_0241 266833 268266 - 6-phospho-beta-glucosidase COGs: COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase~InterPro IPR001360~KEGG: cbe:Cbei_3271 glycoside hydrolase family protein~PFAM: Glycoside hydrolase%2C family 1~PRIAM: 6-phospho-beta-glucosidase~SPTR: 6-phospho-beta-glucosidase%3B~IMG reference gene:2504919106~PFAM: Glycosyl hydrolase family 1 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0241 Trebr_0242 Trebr_0242 Trebr_0242 268291 270271 - pseudogene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0242 Trebr_0243 Trebr_0243 Trebr_0243 270574 271896 - hypothetical protein IMG reference gene:2504919108 gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0243 Trebr_0244 Trebr_0244 Trebr_0244 271962 273443 - hypothetical protein KEGG: bth:BT_3066 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919109 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0244 Trebr_0245 Trebr_0245 Trebr_0245 273440 274468 - hypothetical protein IMG reference gene:2504919110 gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0245 Trebr_0246 Trebr_0246 Trebr_0246 274585 275160 - hypothetical protein IMG reference gene:2504919111 gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0246 Trebr_0247 Trebr_0247 Trebr_0247 275577 276854 + carbamoyl-phosphate synthase%2C small subunit COGs: COG0505 Carbamoylphosphate synthase small subunit~InterPro IPR002474:IPR000991:IPR006274~KEGG: carbamoyl-phosphate synthase small subunit~PFAM: Carbamoyl phosphate synthase%2C small subunit%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal~PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing)~SPTR: Carbamoyl-phosphate synthase%2C small subunit%3B~TIGRFAM: Carbamoyl phosphate synthase%2C small subunit~IMG reference gene:2504919112~PFAM: Carbamoyl-phosphate synthase small chain%2C CPSase domain%3B Glutamine amidotransferase class-I~TIGRFAM: carbamoyl-phosphate synthase%2C small subunit gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0247 Trebr_0248 Trebr_0248 Trebr_0248 276975 281267 + Diaminopimelate epimerase COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ)~HAMAP: Diaminopimelate epimerase~InterProIPR005481:IPR005479:IPR005480:IPR011607:IPR 001653:IPR006275~KEGG: carbamoyl-phosphate synthase large subunit~PFAM: Carbamoyl phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl phosphate synthase%2C large subunit%2C N-terminal%3B Carbamoyl phosphate synthetase%2C large subunit%2C oligomerisation%3B MGS-like%3B Diaminopimelate epimerase~PRIAM: Carbamoyl-phosphate synthase (ammonia).%2C Diaminopimelate epimerase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Carbamoyl phosphate synthase%2C large subunit%2C glutamine-dependent%3B Diaminopimelate epimerase~IMG reference gene:2504919113~PFAM: Carbamoyl-phosphate synthase L chain%2C ATP binding domain%3B MGS-like domain%3B Carbamoyl-phosphate synthetase large chain%2C oligomerisation domain%3B Carbamoyl-phosphate synthase L chain%2C N-terminal domain%3B Diaminopimelate epimerase~TIGRFAM: diaminopimelate epimerase%3B carbamoyl-phosphate synthase%2C large subunit gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0248 Trebr_0249 Trebr_0249 Trebr_0249 281632 282225 + hypothetical protein IMG reference gene:2504919114 gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0249 Trebr_0250 Trebr_0250 Trebr_0250 282418 283596 - hypothetical protein KEGG: elm:ELI_1095 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919115~PFAM: Protein of unknown function (DUF2974) gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0250 Trebr_0251 Trebr_0251 Trebr_0251 283666 284613 - L-lactate dehydrogenase COGs: COG0039 Malate/lactate dehydrogenase~HAMAP: L-lactate dehydrogenase~InterPro IPR001236:IPR011304~KEGG: tde:TDE0351 L-lactate dehydrogenase~PFAM: Lactate/malate dehydrogenase~PRIAM: L-lactate dehydrogenase~SPTR: L-lactate dehydrogenase%3B~TIGRFAM: L-lactate dehydrogenase~IMG reference gene:2504919116~PFAM: lactate/malate dehydrogenase%2C alpha/beta C-terminal domain%3B lactate/malate dehydrogenase%2C NAD binding domain~TIGRFAM: L-lactate dehydrogenase gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0251 Trebr_0252 Trebr_0252 Trebr_0252 284780 285925 - diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160~KEGG: lpp:lpp1170 hypothetical protein~PFAM: Diguanylate cyclase%2C predicted~SMART: Diguanylate cyclase%2C predicted~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504919117~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0252 Trebr_0253 Trebr_0253 Trebr_0253 286146 287675 - tRNA modification GTPase mnmE COGs: COG0486 GTPase~HAMAP: tRNA modification GTPase TrmE~InterPro IPR018948:IPR002917:IPR004520:IPR005225~KEGG: tde:TDE2180 tRNA modification GTPase TrmE~PFAM: GTP-binding protein TrmE%2C N-terminal%3B GTP-binding protein%2C HSR1-related~SPTR: tRNA modification GTPase TrmE%3B~TIGRFAM: tRNA modification GTPase TrmE%3B Small GTP-binding protein~IMG reference gene:2504919118~PFAM: GTPase of unknown function%3B GTP-binding protein TrmE N-terminus~TIGRFAM: small GTP-binding protein domain%3B tRNA modification GTPase TrmE gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0253 Trebr_0254 Trebr_0254 Trebr_0254 287692 288771 - phosphoesterase PA-phosphatase related protein InterPro IPR000326~KEGG: tde:TDE2181 PAP2 family protein~PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase~SMART: Phosphatidic acid phosphatase type 2/haloperoxidase~SPTR: PAP2 family protein%3B~IMG reference gene:2504919119~PFAM: PAP2 superfamily gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0254 Trebr_0255 Trebr_0255 Trebr_0255 288761 291094 - hypothetical protein COGs: COG1306 conserved hypothetical protein~KEGG: tde:TDE2182 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504919120 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0255 Trebr_0256 Trebr_0256 Trebr_0256 291118 292671 - transcriptional regulator%2C GntR family COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs~InterPro IPR000524~KEGG: elm:ELI_4583 transcriptional regulator~PFAM: HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919121~PFAM: Aminotransferase class I and II%3B Bacterial regulatory proteins%2C gntR family gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0256 Trebr_0257 Trebr_0257 Trebr_0257 292801 293823 - ApbE family lipoprotein COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis~InterPro IPR003374~KEGG: toc:Toce_0687 ApbE family lipoprotein~PFAM: ApbE-like lipoprotein~SPTR: Thiamin biosynthesis lipoprotein%3B~IMG reference gene:2504919122~PFAM: ApbE family gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0257 Trebr_0258 Trebr_0258 Trebr_0258 293971 296043 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR001450:IPR007202~KEGG: ssm:Spirs_3433 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B Putative Fe-S cluster%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2504919123~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B Putative Fe-S cluster%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0258 Trebr_0259 Trebr_0259 Trebr_0259 296130 297947 - aspartyl-tRNA synthetase COGs: COG0173 Aspartyl-tRNA synthetase~InterPro IPR004365:IPR004364:IPR004115:IPR004524~KEGG: tde:TDE1587 aspartyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type%3B GAD domain~PRIAM: Aspartate--tRNA ligase~SPTR: Aspartyl-tRNA synthetase%3B~TIGRFAM: Aspartyl-tRNA synthetase%2C class IIb%2C bacterial/mitochondrial type~IMG reference gene:2504919124~PFAM: GAD domain%3B tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: aspartyl-tRNA synthetase%2C bacterial type gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0259 Trebr_0260 Trebr_0260 Trebr_0260 297994 298371 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein COGs: COG1433 conserved hypothetical protein~InterPro IPR003731~KEGG: eel:EUBELI_20470 peptidylprolyl isomerase~PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis~SPTR: Dinitrogenase iron-molybdenum cofactor biosynthesis%3B~IMG reference gene:2504919125~PFAM: Dinitrogenase iron-molybdenum cofactor gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0260 Trebr_0261 Trebr_0261 Trebr_0261 298459 299037 - UPF0059 membrane protein yebN COGs: COG1971 membrane protein~HAMAP: UPF0059 membrane protein yebN~InterPro IPR003810~KEGG: ele:Elen_1273 protein of unknown function DUF204~PFAM: Protein of unknown function DUF204~SPTR: UPF0059 membrane protein CLOSTMETH_02454%3B~IMG reference gene:2504919126~PFAM: Domain of unknown function DUF gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0261 Trebr_0262 Trebr_0262 Trebr_0262 299180 300196 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: ttr:Tter_0828 transcriptional regulator%2C LacI family~PFAM: Periplasmic binding protein/LacI transcriptional regulator%3B HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504919127~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0262 Trebr_0263 Trebr_0263 Trebr_0263 300278 300673 + D-ribose pyranase COGs: COG1869 ABC-type ribose transport system auxiliary component~HAMAP: D-ribose pyranase~InterPro IPR007721~KEGG: lps:LPST_C2989 D-ribose pyranase~PFAM: RbsD/FucU transport~SPTR: D-ribose pyranase%3B~IMG reference gene:2504919128~PFAM: RbsD / FucU transport protein family gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0263 Trebr_0264 Trebr_0264 Trebr_0264 300687 302180 + Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: bld:BLi03843 RbsA~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919129~PFAM: ABC transporter gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0264 Trebr_0265 Trebr_0265 Trebr_0265 302177 303115 + ABC-type transporter%2C integral membrane subunit COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components~InterPro IPR001851~KEGG: sha:SH0178 ribose ABC transporter permease~PFAM: Bacterial inner-membrane translocator~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919130~PFAM: Branched-chain amino acid transport system / permease component gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0265 Trebr_0266 Trebr_0266 Trebr_0266 303125 304009 + periplasmic binding protein/LacI transcriptional regulator COGs: COG1879 ABC-type sugar transport system periplasmic component~InterPro IPR001761~KEGG: esi:Exig_2383 periplasmic binding protein/LacI transcriptional regulator~PFAM: Periplasmic binding protein/LacI transcriptional regulator~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919131~PFAM: family gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0266 Trebr_0267 Trebr_0267 Trebr_0267 304079 305005 + Ribokinase COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: csh:Closa_3271 ribokinase~PFAM: Carbohydrate/purine kinase~PRIAM: Ribokinase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919132~PFAM: pfkB family carbohydrate kinase~TIGRFAM: ribokinase gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0267 Trebr_0268 Trebr_0268 Trebr_0268 305109 306932 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE2549 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504919133~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0268 Trebr_0269 Trebr_0269 Trebr_0269 307092 307703 + LemA family protein COGs: COG1704 conserved hypothetical protein~InterPro IPR007156~KEGG: tde:TDE0955 LemA family protein~PFAM: LemA~SPTR: LemA family protein%3B~IMG reference gene:2504919134~PFAM: LemA family gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0269 Trebr_0270 Trebr_0270 Trebr_0270 307729 308463 + protein of unknown function DUF477 COGs: COG3762 membrane protein~InterPro IPR007621~KEGG: tde:TDE2528 hypothetical protein~PFAM: Protein of unknown function DUF477~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919135~PFAM: Domain of unknown function (DUF477) gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0270 Trebr_0271 Trebr_0271 Trebr_0271 308453 309253 + protein of unknown function DUF477 COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type~InterPro IPR007621~KEGG: tde:TDE0956 hypothetical protein~PFAM: Protein of unknown function DUF477~SPTR: Beta-propeller domain of methanol dehydrogenase type protein%3B~IMG reference gene:2504919136~PFAM: Domain of unknown function (DUF477) gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0271 Trebr_0272 Trebr_0272 Trebr_0272 309525 310055 - GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: gbm:Gbem_1244 GNAT family acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Acetyltransferase%2C GNAT family%3B~IMG reference gene:2504919137~PFAM: Acetyltransferase (GNAT) family gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0272 Trebr_0273 Trebr_0273 Trebr_0273 310062 311363 - hypothetical protein KEGG: tmz:Tmz1t_0258 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919138 gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0273 Trebr_0274 Trebr_0274 Trebr_0274 311845 313692 + Prolyl-tRNA synthetase COGs: COG0442 Prolyl-tRNA synthetase~HAMAP: Prolyl-tRNA synthetase~InterPro IPR002314:IPR007214:IPR004154:IPR004500~KEGG: tde:TDE2220 prolyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region%3B YbaK/aminoacyl-tRNA synthetase associated region%3B Anticodon-binding~SPTR: Prolyl-tRNA synthetase%3B~TIGRFAM: Prolyl-tRNA synthetase%2C class IIa%2C bacterial~IMG reference gene:2504919139~PFAM: Anticodon binding domain%3B YbaK / prolyl-tRNA synthetases associated domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: prolyl-tRNA synthetase%2C family II gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0274 Trebr_0275 Trebr_0275 Trebr_0275 313706 314872 + hypothetical protein KEGG: tde:TDE2221 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919140 gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0275 Trebr_0276 Trebr_0276 Trebr_0276 315122 315976 - Lipoprotein LpqB%2C GerMN domain protein COGs: COG5401 Spore germination protein~InterPro IPR019606~KEGG: tde:TDE2081 hypothetical protein~PFAM: Lipoprotein LpqB%2C GerMN domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919141~PFAM: Sporulation and spore germination gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0276 Trebr_0277 Trebr_0277 Trebr_0277 316149 317993 - 2-aminoethylphosphonate aminotransferase COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase~InterPro IPR000192:IPR017688~KEGG: tde:TDE1415 nucleotidyl transferase/aminotransferase%2C class V~PFAM: Aminotransferase%2C class V/Cysteine desulfurase~PRIAM: 2-aminoethylphosphonate--pyruvate transaminase~SPTR: Nucleotidyl transferase/aminotransferase%2C class V%3B~TIGRFAM: 2-aminoethylphosphonate aminotransferase~IMG reference gene:2504919142~PFAM: Nucleotidyl transferase%3B Aminotransferase class-V~TIGRFAM: 2-aminoethylphosphonate aminotransferase gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0277 Trebr_0278 Trebr_0278 Trebr_0278 318011 319162 - phosphonopyruvate decarboxylase COGs: COG0028 Thiamine pyrophosphate-requiring protein~InterPro IPR011766:IPR017684~KEGG: tde:TDE1414 phosphonopyruvate decarboxylase%2C putative~PFAM: Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~PRIAM: Phosphonopyruvate decarboxylase~SPTR: Phosphonopyruvate decarboxylase%2C putative%3B~TIGRFAM: Phosphonopyruvate decarboxylase~IMG reference gene:2504919143~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: phosphonopyruvate decarboxylase gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0278 Trebr_0279 Trebr_0279 Trebr_0279 319193 320539 - phosphoenolpyruvate phosphomutase COGs: COG2513 PEP phosphonomutase~InterPro IPR004820:IPR004821:IPR012698~KEGG: tde:TDE1413 cytidylyltransferase/phosphoenolpyruvate phosphomutase%2C putative~PFAM: Cytidylyltransferase~PRIAM: Phosphoenolpyruvate mutase~SPTR: Cytidylyltransferase/phosphoenolpyruvate phosphomutase%2C putative%3B~TIGRFAM: Phosphoenolpyruvate phosphomutase%2C core%3B Cytidyltransferase-related~IMG reference gene:2504919144~PFAM: Cytidylyltransferase~TIGRFAM: phosphoenolpyruvate phosphomutase gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0279 Trebr_0280 Trebr_0280 Trebr_0280 320675 322393 + hypothetical protein KEGG: ank:AnaeK_4433 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919145 gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0280 Trebr_0281 Trebr_0281 Trebr_0281 322459 324492 + Formate C-acetyltransferase COGs: COG1882 Pyruvate-formate lyase~InterPro IPR004184:IPR001150~KEGG: dsy:DSY3016 putative pyruvate-formate lyase~PFAM: Formate C-acetyltransferase glycine radical%3B Pyruvate formate-lyase%2C PFL~PRIAM: Formate C-acetyltransferase~SPTR: Putative pyruvate-formate lyase%3B~IMG reference gene:2504919146~PFAM: Glycine radical%3B Pyruvate formate lyase gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0281 Trebr_0282 Trebr_0282 Trebr_0282 324489 325265 + (Formate-C-acetyltransferase)-activating enzyme COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR007197~KEGG: mth:MTH345 pyruvate formate-lyase 2 activating enzyme~PFAM: Radical SAM~PRIAM: [Formate-C-acetyltransferase]-activating enzyme~SPTR: Pyruvate-formate lyase-activating enzyme%3B~IMG reference gene:2504919147~PFAM: Radical SAM superfamily gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0282 Trebr_0283 Trebr_0283 Trebr_0283 325276 326739 + polysaccharide biosynthesis protein COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid~InterPro IPR002797~KEGG: ere:EUBREC_2621 polysaccharide biosynthesis protein~PFAM: Polysaccharide biosynthesis protein~SPTR: Polysaccharide biosynthesis protein%3B~IMG reference gene:2504919148~PFAM: Polysaccharide biosynthesis protein gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0283 Trebr_0284 Trebr_0284 Trebr_0284 326821 327027 + hypothetical protein IMG reference gene:2504919149 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0284 Trebr_0285 Trebr_0285 Trebr_0285 327067 327313 + pseudogene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0285 Trebr_0286 Trebr_0286 Trebr_0286 327314 328426 + UDP-galactopyranose mutase COGs: COG0562 UDP-galactopyranose mutase~InterPro IPR015899:IPR004379~KEGG: bfs:BF1370 putative LPS biosynthesis related UDP-galactopyranose mutase~PFAM: UDP-galactopyranose mutase%2C C-terminal~PRIAM: UDP-galactopyranose mutase~SPTR: Putative LPS biosynthesis related UDP-galactopyranose mutase%3B~TIGRFAM: UDP-galactopyranose mutase~IMG reference gene:2504919151~PFAM: UDP-galactopyranose mutase~TIGRFAM: UDP-galactopyranose mutase gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0286 Trebr_0287 Trebr_0287 Trebr_0287 328404 329315 + exopolysaccharide biosynthesis protein KEGG: cbi:CLJ_B2914 exopolysaccharide biosynthesis protein~SPTR: Exopolysaccharide biosynthesis protein%3B~IMG reference gene:2504919152 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0287 Trebr_0288 Trebr_0288 Trebr_0288 329321 330235 + glycosyl transferase family 2 COGs: COG1216 glycosyltransferase~InterPro IPR001173~KEGG: fsu:Fisuc_0984 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase family 2%3B~IMG reference gene:2504919153~PFAM: Glycosyl transferase family 2 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0288 Trebr_0289 Trebr_0289 Trebr_0289 330240 331400 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: nhl:Nhal_3660 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyltransferase%2C group 1 family protein%3B~IMG reference gene:2504919154~PFAM: Glycosyl transferases group 1 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0289 Trebr_0290 Trebr_0290 Trebr_0290 331391 332227 + hypothetical protein KEGG: ljf:FI9785_687 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919155~PFAM: Glycosyl transferase family 2 gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0290 Trebr_0291 Trebr_0291 Trebr_0291 332322 333488 + nucleotide sugar dehydrogenase COGs: COG1004 UDP-glucose 6-dehydrogenase~InterPro IPR001732:IPR014026:IPR014027:IPR017476~KEGG: efe:EFER_2111 UDP-glucose 6-dehydrogenase~PFAM: UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal%3B UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation%3B UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal~PRIAM: UDP-glucose 6-dehydrogenase~SPTR: UDP-glucose dehydrogenase%3B~TIGRFAM: Nucleotide sugar dehydrogenase~IMG reference gene:2504919156~PFAM: UDP-glucose/GDP-mannose dehydrogenase family%2C NAD binding domain%3B UDP-glucose/GDP-mannose dehydrogenase family%2C central domain%3B UDP-glucose/GDP-mannose dehydrogenase family%2C UDP binding domain~TIGRFAM: nucleotide sugar dehydrogenase gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0291 Trebr_0292 Trebr_0292 Trebr_0292 333495 334661 + hypothetical protein KEGG: cch:Cag_1863 glycosyl transferase%2C group 1 family protein~SPTR: Glycosyl transferase%2C group 1 family protein%3B~IMG reference gene:2504919157 gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0292 Trebr_0293 Trebr_0293 Trebr_0293 334689 335816 + TDP-4-keto-6-deoxy-D-glucose transaminase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653:IPR012749~KEGG: cbk:CLL_A3243 TDP-4-oxo-6-deoxy-D-glucose transaminase~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase~IMG reference gene:2504919158~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family~TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0293 Trebr_0294 Trebr_0294 Trebr_0294 335813 336736 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: dol:Dole_1293 ribonuclease III~PFAM: Glycosyl transferase%2C family 2~SPTR: Bactoprenol glucosyl transferase%3B~IMG reference gene:2504919159~PFAM: Glycosyl transferase family 2 gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0294 Trebr_0295 Trebr_0295 Trebr_0295 336726 337082 + protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: shi:Shel_14330 hypothetical protein~PFAM: Protein of unknown function DUF6%2C transmembrane~SPTR: EamA-like transporter family%3B~IMG reference gene:2504919160~PFAM: EamA-like transporter family gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0295 Trebr_0296 Trebr_0296 Trebr_0296 337075 337416 + protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: elm:ELI_1406 EamA-like transporter family~PFAM: Protein of unknown function DUF6%2C transmembrane~SPTR: EamA-like transporter family%3B~IMG reference gene:2504919161~PFAM: EamA-like transporter family gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0296 Trebr_0297 Trebr_0297 Trebr_0297 337453 339282 + hypothetical protein KEGG: bpb:bpr_I0355 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919162 gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0297 Trebr_0298 Trebr_0298 Trebr_0298 339369 340421 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: bxe:Bxe_A3712 putative glycosyl transferases group 1 protein~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase%2C group 1 family%3B~IMG reference gene:2504919163~PFAM: Glycosyl transferases group 1 gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0298 Trebr_0299 Trebr_0299 Trebr_0299 340513 342429 - hypothetical protein KEGG: tde:TDE1231 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919164 gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0299 Trebr_0300 Trebr_0300 Trebr_0300 342456 344297 - hypothetical protein KEGG: tde:TDE1234 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919165 gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0300 Trebr_0301 Trebr_0301 Trebr_0301 344438 347143 + 60 kDa inner membrane insertion protein COGs: COG0706 Preprotein translocase subunit YidC~InterPro IPR001708~KEGG: tde:TDE1436 inner membrane protein~PFAM: Membrane insertion protein%2C OxaA/YidC~SPTR: Inner membrane protein%3B~IMG reference gene:2504919166~PFAM: 60Kd inner membrane protein%3B Type I phosphodiesterase / nucleotide pyrophosphatase~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family%2C C-terminal domain gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0301 Trebr_0302 Trebr_0302 Trebr_0302 347143 348387 + CDP-glycerol:poly(glycerophosphate)glycerophosphotransferase InterPro IPR007554~KEGG: tde:TDE1435 hypothetical protein~PFAM: CDP-glycerol glycerophosphotransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919167~PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0302 Trebr_0303 Trebr_0303 Trebr_0303 348384 349460 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: ipo:Ilyop_2681 glycosyl transferase group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase group 1%3B~IMG reference gene:2504919168~PFAM: Glycosyl transferases group 1 gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0303 Trebr_0304 Trebr_0304 Trebr_0304 349438 350556 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: cow:Calow_0028 glycosyl transferase group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase%3B~IMG reference gene:2504919169~PFAM: Glycosyl transferases group 1 gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0304 Trebr_0305 Trebr_0305 Trebr_0305 350687 352088 + pseudogene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0305 Trebr_0306 Trebr_0306 Trebr_0306 352101 354230 - Polyphosphate kinase COGs: COG0855 Polyphosphate kinase~HAMAP: Polyphosphate kinase~InterPro IPR003414~KEGG: hmo:HM1_0232 polyphosphate kinase~PFAM: Polyphosphate kinase~PRIAM: Polyphosphate kinase~SPTR: Polyphosphate kinase%3B~TIGRFAM: polyphosphate kinase 1~IMG reference gene:2504919171~PFAM: Polyphosphate kinase~TIGRFAM: polyphosphate kinase 1 gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0306 Trebr_0307 Trebr_0307 Trebr_0307 354269 355828 - Ppx/GppA phosphatase COGs: COG0248 Exopolyphosphatase~InterPro IPR003695:IPR006674~KEGG: sta:STHERM_c22140 hypothetical protein~PFAM: Ppx/GppA phosphatase%3B Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SPTR: Ppx/GppA phosphatase%3B~IMG reference gene:2504919172~PFAM: HD domain%3B Ppx/GppA phosphatase family gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0307 Trebr_0308 Trebr_0308 Trebr_0308 355866 357296 - hypothetical protein COGs: COG1626 Neutral trehalase~KEGG: tpp:TPASS_0931 hypothetical protein~SPTR: Trehalase%3B~IMG reference gene:2504919173~PFAM: Trehalase gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0308 Trebr_0309 Trebr_0309 Trebr_0309 357394 359727 + Asn/Gln amidotransferase COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)~InterPro IPR006075:IPR018027:IPR006034~KEGG: sta:STHERM_c22190 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B~PFAM: Asn/Gln amidotransferase%3B Glutamyl-tRNA(Gln) amidotransferase%2C subunit B/E%2C N-terminal%3B Asparaginase/glutaminase~SPTR: Putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B%3B~IMG reference gene:2504919174~PFAM: GatB/GatE catalytic domain%3B Asparaginase%3B GatB domain~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C B subunit gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0309 Trebr_0310 Trebr_0310 Trebr_0310 359768 361561 - hypothetical protein KEGG: tde:TDE0994 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919175 gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0310 Trebr_0311 Trebr_0311 Trebr_0311 361625 363133 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: tpp:TPASS_0954 hypothetical protein~PFAM: Tetratricopeptide TPR-1~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919176~PFAM: Tetratricopeptide repeat gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0311 Trebr_0312 Trebr_0312 Trebr_0312 363166 364359 + TraB family protein COGs: COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein)~InterPro IPR002816:IPR005230~KEGG: tde:TDE0026 TraB family protein~PFAM: Pheromone shutdown-related%2C TraB~SPTR: TraB family protein%3B~TIGRFAM: Pheromone shutdown%2C TraB~IMG reference gene:2504919177~PFAM: TraB family~TIGRFAM: pheromone shutdown-related protein TraB gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0312 Trebr_0313 Trebr_0313 Trebr_0313 364385 365125 + hypothetical protein KEGG: tde:TDE2545 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919178 gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0313 Trebr_0314 Trebr_0314 Trebr_0314 365149 365847 + MgtC/SapB transporter COGs: COG1285 membrane protein~InterPro IPR003416~KEGG: tde:TDE0863 MgtC family protein~PFAM: MgtC/SapB transporter~SPTR: MgtC family protein%3B~IMG reference gene:2504919179~PFAM: MgtC family gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0314 Trebr_0315 Trebr_0315 Trebr_0315 365902 366321 - PilT domain-containing protein KEGG: chy:CHY_1722 PilT domain-containing protein~SPTR: PIN domain protein%3B~IMG reference gene:2504919180 gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0315 Trebr_0316 Trebr_0316 Trebr_0316 366318 366542 - hypothetical protein IMG reference gene:2504919181 gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0316 Trebr_0317 Trebr_0317 Trebr_0317 366717 367559 + Cof-like hydrolase COGs: COG0561 hydrolase of the HAD superfamily~InterPro IPR013200:IPR000150:IPR006379~KEGG: ssm:Spirs_0338 Cof-like hydrolase~PFAM: HAD superfamily hydrolase-like%2C type 3~SPTR: Hydrolase%3B~TIGRFAM: Cof protein%3B HAD-superfamily hydrolase%2C subfamily IIB~IMG reference gene:2504919182~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily%3B HAD-superfamily hydrolase%2C subfamily IIB gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0317 Trebr_0318 Trebr_0318 Trebr_0318 367568 368536 + putative signal transduction protein with CBS domains COGs: COG2524 transcriptional regulator protein~InterPro IPR000644:IPR003594~KEGG: ssm:Spirs_1313 putative signal transduction protein with CBS domains~PFAM: Cystathionine beta-synthase%2C core%3B ATP-binding region%2C ATPase-like~SMART: Cystathionine beta-synthase%2C core~SPTR: Putative signal transduction protein with CBS domains%3B~IMG reference gene:2504919183~PFAM: CBS domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0318 Trebr_0319 Trebr_0319 Trebr_0319 368655 369029 + hypothetical protein KEGG: sta:STHERM_c13820 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919184~PFAM: DRTGG domain gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0319 Trebr_0320 Trebr_0320 Trebr_0320 369145 369894 + PHP domain protein InterPro IPR003141:IPR004013~KEGG: ssm:Spirs_1311 PHP domain protein~PFAM: PHP%2C C-terminal~SMART: Polymerase/histidinol phosphatase%2C N-terminal~SPTR: PHP domain protein%3B~IMG reference gene:2504919185~PFAM: PHP domain gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0320 Trebr_0321 Trebr_0321 Trebr_0321 369910 370743 - two component transcriptional regulator%2C AraC family COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789:IPR018060:IPR000005~KEGG: gym:GYMC10_1096 two component transcriptional regulator%2C AraC family~PFAM: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain%3B Signal transduction response regulator%2C receiver region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919186~PFAM: Response regulator receiver domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0321 Trebr_0322 Trebr_0322 Trebr_0322 370718 372562 - integral membrane sensor signal transduction histidine kinase COGs: COG2972 signal transduction protein with a C-terminal ATPase domain~InterPro IPR003660:IPR010559:IPR003594~KEGG: ckn:Calkro_0107 integral membrane sensor signal transduction histidine kinase~PFAM: Signal transduction histidine kinase%2C internal region%3B HAMP linker domain%3B ATP-binding region%2C ATPase-like~SMART: HAMP linker domain~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504919187~PFAM: Histidine kinase%3B HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0322 Trebr_0323 Trebr_0323 Trebr_0323 372750 374051 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: csc:Csac_2516 extracellular solute-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Carbohydrate ABC transporter substrate-binding protein%2C CUT1 family%3B~IMG reference gene:2504919188~PFAM: Bacterial extracellular solute-binding protein gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0323 Trebr_0324 Trebr_0324 Trebr_0324 374144 375025 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: ckn:Calkro_0109 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504919189~PFAM: Binding-protein-dependent transport system inner membrane component gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0324 Trebr_0325 Trebr_0325 Trebr_0325 375048 375878 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: tte:TTE2347 sugar permeases~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Sugar permeases%3B~IMG reference gene:2504919190~PFAM: Binding-protein-dependent transport system inner membrane component gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0325 Trebr_0326 Trebr_0326 Trebr_0326 375883 377244 + Glucosylceramidase COGs: COG5520 O-Glycosyl hydrolase~InterPro IPR001139~KEGG: cpy:Cphy_0858 glycoside hydrolase family protein~PFAM: Glycoside hydrolase%2C family 30~PRIAM: Glucosylceramidase~SPTR: Glucosylceramidase%3B~IMG reference gene:2504919191~PFAM: O-Glycosyl hydrolase family 30 gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0326 Trebr_0327 Trebr_0327 Trebr_0327 377663 379390 - Long-chain-fatty-acid--CoA ligase COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming)~InterPro IPR000873~KEGG: tde:TDE0942 long-chain-fatty-acid--CoA ligase%2C putative~PFAM: AMP-dependent synthetase/ligase~PRIAM: Long-chain-fatty-acid--CoA ligase~SPTR: Putative long-chain-fatty-acid--CoA ligase%3B~IMG reference gene:2504919192~PFAM: AMP-binding enzyme gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0327 Trebr_0328 Trebr_0328 Trebr_0328 379547 380653 + NLP/P60 protein COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein)~InterPro IPR000064~KEGG: tde:TDE0941 NLP/P60 family protein~PFAM: NLP/P60~SPTR: NLP/P60 family protein%3B~IMG reference gene:2504919193~PFAM: NlpC/P60 family gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0328 Trebr_0329 Trebr_0329 Trebr_0329 380820 381623 + hypothetical protein KEGG: tde:TDE2164 hypothetical protein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504919194 gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0329 Trebr_0330 Trebr_0330 Trebr_0330 381760 382242 + NADH dehydrogenase (ubiquinone) 24 kDa subunit COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit~InterPro IPR002023~KEGG: sta:STHERM_c13780 hypothetical protein~PFAM: NADH:ubiquinone oxidoreductase%2C 24kDa subunit~SPTR: NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein%3B~IMG reference gene:2504919195~PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0330 Trebr_0331 Trebr_0331 Trebr_0331 382246 382845 + histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003594~KEGG: ssm:Spirs_3690 histidine kinase~PFAM: ATP-binding region%2C ATPase-like~SPTR: Histidine kinase%3B~IMG reference gene:2504919196~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0331 Trebr_0332 Trebr_0332 Trebr_0332 382846 383241 + NAD(P)-dependent iron-only hydrogenase iron-sulfur protein KEGG: ssm:Spirs_3689 NAD(P)-dependent iron-only hydrogenase iron-sulfur protein~SPTR: NAD(P)-dependent iron-only hydrogenase iron-sulfur protein%3B~IMG reference gene:2504919197 gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0332 Trebr_0333 Trebr_0333 Trebr_0333 383261 385042 + NADH dehydrogenase (quinone) COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit~InterPro IPR011538:IPR019554:IPR019575:IPR001450~KEGG: ssm:Spirs_3688 NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein~PFAM: NADH:ubiquinone oxidoreductase%2C 51kDa subunit%3B Soluble ligand binding domain%3B NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~PRIAM: NADH dehydrogenase (quinone)~SPTR: NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein%3B~IMG reference gene:2504919198~PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region%3B 4Fe-4S binding domain%3B Respiratory-chain NADH dehydrogenase 24 Kd subunit%3B Respiratory-chain NADH dehydrogenase 51 Kd subunit%3B SLBB domain gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0333 Trebr_0334 Trebr_0334 Trebr_0334 385052 386794 + hydrogenase%2C Fe-only COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain~InterProIPR001041:IPR019574:IPR001450:IPR004108:IPR 003149:IPR013352~KEGG: ssm:Spirs_3687 NAD(P)-dependent iron-only hydrogenase catalytic subunit~PFAM: Iron hydrogenase%2C large subunit%2C C-terminal%3B NADH:ubiquinone oxidoreductase%2C subunit G%2C iron-sulphur binding%3B Ferredoxin%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup%3B Iron hydrogenase%2C small subunit-like~PRIAM: Ferredoxin hydrogenase~SPTR: NAD(P)-dependent iron-only hydrogenase catalytic subunit%3B~TIGRFAM: Iron hydrogenase%2C subset~IMG reference gene:2504919199~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B NADH-ubiquinone oxidoreductase-G iron-sulfur binding region%3B Iron hydrogenase small subunit~TIGRFAM: hydrogenase%2C Fe-only gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0334 Trebr_0335 Trebr_0335 Trebr_0335 386913 388844 - methyl-accepting chemotaxis sensory transducer with Cache sensor COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089:IPR013163~KEGG: tde:TDE0178 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain%3B Cache%2C type 2~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504919200~PFAM: Cache domain%3B HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0335 Trebr_0336 Trebr_0336 Trebr_0336 389036 389275 + SlyX family protein InterPro IPR007236~PFAM: SlyX~IMG reference gene:2504919201~PFAM: SlyX gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0336 Trebr_0337 Trebr_0337 Trebr_0337 389403 390635 + hypothetical protein KEGG: ssm:Spirs_0506 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919202 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0337 Trebr_0338 Trebr_0338 Trebr_0338 390784 392382 + Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: ssm:Spirs_0505 ABC transporter related protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Ribose import ATP-binding protein RbsA%3B~IMG reference gene:2504919203~PFAM: ABC transporter gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0338 Trebr_0339 Trebr_0339 Trebr_0339 392379 393443 + ABC-type transporter%2C integral membrane subunit COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components~InterPro IPR001851~KEGG: aco:Amico_0359 inner-membrane translocator~PFAM: Bacterial inner-membrane translocator~SPTR: ABC transporter integral membrane protein%3B~IMG reference gene:2504919204~PFAM: Branched-chain amino acid transport system / permease component gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0339 Trebr_0340 Trebr_0340 Trebr_0340 393440 394588 + ABC-type transporter%2C integral membrane subunit COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components~InterPro IPR001851~KEGG: aco:Amico_0360 inner-membrane translocator~PFAM: Bacterial inner-membrane translocator~SPTR: ABC transporter integral membrane protein%3B~IMG reference gene:2504919205~PFAM: Branched-chain amino acid transport system / permease component gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0340 Trebr_0341 Trebr_0341 Trebr_0341 394588 394968 + hypothetical protein KEGG: tai:Taci_0124 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919206 gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0341 Trebr_0342 Trebr_0342 Trebr_0342 394995 395612 + transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001867~KEGG: cdf:CD3376 putative transcriptional regulator~PFAM: Signal transduction response regulator%2C C-terminal~SPTR: Transcriptional regulatory protein%3B~IMG reference gene:2504919207~PFAM: Transcriptional regulatory protein%2C C terminal gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0342 Trebr_0343 Trebr_0343 Trebr_0343 395743 397062 + PP-loop domain protein COGs: COG3969 phosphoadenosine phosphosulfate sulfotransferase~InterPro IPR011063~KEGG: elm:ELI_1852 Co-activator of prophage gene expression IbrA~PFAM: PP-loop~SPTR: Co-activator of prophage gene expression IbrA%3B~IMG reference gene:2504919208~PFAM: Domain of unknown function (DUF3440)%3B Phosphoadenosine phosphosulfate reductase family gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0343 Trebr_0344 Trebr_0344 Trebr_0344 397062 397598 + ParB domain protein nuclease COGs: COG1475 transcriptional regulator protein~InterPro IPR003115~KEGG: cdl:CDR20291_0520 hypothetical protein~PFAM: ParB-like nuclease~SMART: ParB-like nuclease~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919209~PFAM: ParB-like nuclease domain gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0344 Trebr_0345 Trebr_0345 Trebr_0345 397616 399226 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR003660~KEGG: bgf:BC1003_2114 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2504919210~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0345 Trebr_0346 Trebr_0346 Trebr_0346 399563 400357 - MscS Mechanosensitive ion channel COGs: COG3264 Small-conductance mechanosensitive channel~InterPro IPR006685~KEGG: tde:TDE2295 mechanosensitive ion channel family protein~PFAM: Mechanosensitive ion channel MscS~SPTR: Mechanosensitive ion channel family protein%3B~IMG reference gene:2504919211~PFAM: Mechanosensitive ion channel gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0346 Trebr_0347 Trebr_0347 Trebr_0347 400359 401066 - endonuclease III COGs: COG0177 EndoIII-related endonuclease~InterPro IPR003265:IPR003583:IPR003651:IPR005759~KEGG: rpd:RPD_0381 endonuclease III~PFAM: HhH-GPD domain%3B Endonuclease III-like%2C iron-sulphur cluster loop motif~PRIAM: DNA-(apurinic or apyrimidinic site) lyase~SMART: HhH-GPD domain%3B Helix-hairpin-helix DNA-binding motif%2C class 1%3B Endonuclease III-like%2C iron-sulphur cluster loop motif~SPTR: Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase%3B~TIGRFAM: Endonuclease III/Nth~IMG reference gene:2504919212~PFAM: HhH-GPD superfamily base excision DNA repair protein%3B Iron-sulfur binding domain of endonuclease III%3B Helix-hairpin-helix motif~TIGRFAM: endonuclease III gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0347 Trebr_0348 Trebr_0348 Trebr_0348 401081 402253 - S-adenosylmethionine synthase COGs: COG0192 S-adenosylmethionine synthetase~HAMAP: S-adenosylmethionine synthase~InterPro IPR002133~KEGG: tde:TDE2470 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase~PRIAM: Methionine adenosyltransferase~SPTR: S-adenosylmethionine synthase%3B~TIGRFAM: S-adenosylmethionine synthetase~IMG reference gene:2504919213~PFAM: S-adenosylmethionine synthetase%2C C-terminal domain%3B S-adenosylmethionine synthetase%2C N-terminal domain%3B S-adenosylmethionine synthetase%2C central domain~TIGRFAM: S-adenosylmethionine synthetase gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0348 Trebr_0349 Trebr_0349 Trebr_0349 402466 402774 + glycoside hydrolase family 13 domain protein InterPro IPR004193~KEGG: dol:Dole_0850 glycoside hydrolase family protein~PFAM: Glycoside hydrolase%2C family 13%2C N-terminal~SPTR: Glycoside hydrolase%2C family 13-like protein%3B~IMG reference gene:2504919214~PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain) gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0349 Trebr_0350 Trebr_0350 Trebr_0350 402851 404617 - dihydroorotate dehydrogenase family protein COGs: COG0167 Dihydroorotate dehydrogenase~InterProIPR008333:IPR001433:IPR019480:IPR012135:IPR 005720~KEGG: apr:Apre_0785 dihydroorotate dehydrogenase family protein~PFAM: Dihydroorotate dehydrogenase%2C class 1/ 2%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain%3B Oxidoreductase FAD/NAD(P)-binding%3B Oxidoreductase FAD-binding region~PRIAM: Dihydroorotate oxidase~SPTR: Dihydroorotate dehydrogenase%3B~TIGRFAM: Dihydroorotate dehydrogenase%2C class 1%2C core~IMG reference gene:2504919215~PFAM: Dihydroorotate dehydrogenase%3B Oxidoreductase FAD-binding domain%3B Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain~TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0350 Trebr_0351 Trebr_0351 Trebr_0351 404628 405590 - Orotidine 5'-phosphate decarboxylase COGs: COG0284 Orotidine-5'-phosphate decarboxylase~HAMAP: Orotidine 5'-phosphate decarboxylase~InterPro IPR001754:IPR011995~KEGG: cbl:CLK_2636 orotidine 5'-phosphate decarboxylase~PFAM: Orotidine 5'-phosphate decarboxylase%2C core~PRIAM: Orotidine-5'-phosphate decarboxylase~SPTR: Orotidine 5'-phosphate decarboxylase%3B~TIGRFAM: Orotidine 5'-phosphate decarboxylase%2C subfamily 2%2C core~IMG reference gene:2504919216~PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family~TIGRFAM: orotidine 5'-phosphate decarboxylase%2C subfamily 2 gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0351 Trebr_0352 Trebr_0352 Trebr_0352 405835 407091 + Radical SAM domain protein COGs: COG0535 Fe-S oxidoreductase~InterPro IPR007197~KEGG: dal:Dalk_4338 radical SAM domain protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504919217~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM additional 4Fe4S-binding domain gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0352 Trebr_0353 Trebr_0353 Trebr_0353 407093 408373 + hypothetical protein KEGG: ath:AT1G10740 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919218 gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0353 Trebr_0354 Trebr_0354 Trebr_0354 408393 412814 + Tetratricopeptide TPR_1 repeat-containing protein COGs: COG3899 ATPase~InterPro IPR019734:IPR001440~KEGG: lic:LIC13201 adenylate/guanylate cyclase~PFAM: Tetratricopeptide TPR-1~SPTR: Adenylate/guanylate cyclase%3B~IMG reference gene:2504919219~PFAM: Adenylate and Guanylate cyclase catalytic domain gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0354 Trebr_0355 Trebr_0355 Trebr_0355 412827 414590 + metallophosphoesterase InterPro IPR004843~KEGG: mxa:MXAN_1444 hypothetical protein~PFAM: Metallophosphoesterase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919220 gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0355 Trebr_0356 Trebr_0356 Trebr_0356 414675 415688 + DNA methylase N-4/N-6 domain protein COGs: COG0863 DNA modification methylase~InterPro IPR002941~KEGG: cyn:Cyan7425_0828 DNA methylase N-4/N-6 domain protein~PFAM: DNA methylase N-4/N-6~SPTR: DNA (Cytosine-5-)-methyltransferase%3B~IMG reference gene:2504919221~PFAM: DNA methylase gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0356 Trebr_0357 Trebr_0357 Trebr_0357 415719 416567 - Phosphonate-transporting ATPase COGs: COG1101 ABC-type uncharacterized transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: gbm:Gbem_0725 ABC transporter ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504919222~PFAM: ABC transporter gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0357 Trebr_0358 Trebr_0358 Trebr_0358 416567 417544 - ABC-type transporter%2C integral membrane subunit COGs: COG4120 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: ssm:Spirs_2323 inner-membrane translocator~PFAM: Bacterial inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2504919223~PFAM: Branched-chain amino acid transport system / permease component gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0358 Trebr_0359 Trebr_0359 Trebr_0359 418018 419022 - ABC transporter substrate binding protein COGs: COG2984 ABC-type uncharacterized transport system periplasmic component~InterPro IPR007487~KEGG: gsu:GSU0210 hypothetical protein~PFAM: ABC transporter substrate binding protein~SPTR: ABC transporter%2C periplasmic solute-binding protein%3B~IMG reference gene:2504919224~PFAM: ABC transporter substrate binding protein gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0359 Trebr_0360 Trebr_0360 Trebr_0360 419124 419426 - helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE0440 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~IMG reference gene:2504919225~PFAM: Helix-turn-helix gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0360 Trebr_0361 Trebr_0361 Trebr_0361 419566 419913 + hypothetical protein IMG reference gene:2504919226 gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0361 Trebr_0362 Trebr_0362 Trebr_0362 419944 420585 + hypothetical protein IMG reference gene:2504919227 gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0362 Trebr_0363 Trebr_0363 Trebr_0363 420677 422014 - putative transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterPro IPR000595~KEGG: tde:TDE0102 cyclic nucleotide-binding protein~PFAM: Cyclic nucleotide-binding~SMART: Cyclic nucleotide-binding~SPTR: Cyclic nucleotide-binding protein%3B~IMG reference gene:2504919228~PFAM: Cyclic nucleotide-binding domain gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0363 Trebr_0364 Trebr_0364 Trebr_0364 422198 424114 + helicase domain-containing protein COGs: COG1061 DNA or RNA helicase of superfamily II~InterPro IPR014001:IPR001650:IPR006935~KEGG: tde:TDE2721 helicase domain-containing protein~PFAM: DNA/RNA helicase%2C C-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: Helicase domain protein%3B~IMG reference gene:2504919229~PFAM: Helicase conserved C-terminal domain%3B Type III restriction enzyme%2C res subunit~TIGRFAM: DNA repair helicase rad25 gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0364 Trebr_0365 Trebr_0365 Trebr_0365 424111 426507 + hypothetical protein KEGG: tde:TDE0193 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919230 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0365 Trebr_0366 Trebr_0366 Trebr_0366 426531 427325 + Phosphoglycolate phosphatase COGs: COG0546 phosphatase~InterPro IPR005834~KEGG: eck:EC55989_3790 phosphoglycolate phosphatase~PFAM: Haloacid dehalogenase-like hydrolase~PRIAM: Phosphoglycolate phosphatase~SPTR: Phosphoglycolate phosphatase%3B~IMG reference gene:2504919231~PFAM: haloacid dehalogenase-like hydrolase gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0366 Trebr_0367 Trebr_0367 Trebr_0367 427667 427861 + hypothetical protein IMG reference gene:2504919232 gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0367 Trebr_0368 Trebr_0368 Trebr_0368 433198 433620 + hypothetical protein KEGG: cpy:Cphy_1853 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919237~PFAM: Protein of unknown function (DUF2871) gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0368 Trebr_0369 Trebr_0369 Trebr_0369 433763 434803 - ribonucleotide reductase COGs: COG0208 Ribonucleotide reductase beta subunit~InterPro IPR000358~KEGG: bvu:BVU_3097 ribonucleotide-diphosphate reductase subunit beta~PFAM: Ribonucleotide reductase~SPTR: Ribonucleoside-diphosphate reductase%2C beta subunit%3B~IMG reference gene:2504919238~PFAM: Ribonucleotide reductase%2C small chain gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0369 Trebr_0370 Trebr_0370 Trebr_0370 434945 437479 - ribonucleoside-diphosphate reductase%2C alpha subunit InterPro IPR005144:IPR013509:IPR000788:IPR013346~KEGG: bfs:BF2713 ribonucleotide-diphosphate reductase subunit alpha~PFAM: Ribonucleotide reductase large subunit%2C C-terminal%3B Ribonucleotide reductase large subunit%2C N-terminal%3B ATP-cone~PRIAM: Ribonucleoside-diphosphate reductase~SPTR: Ribonucleoside-diphosphate reductase%3B~TIGRFAM: Ribonucleoside-diphosphate reductase%2C alpha subunit~IMG reference gene:2504919239~PFAM: Ribonucleotide reductase%2C all-alpha domain%3B ATP cone domain%3B Ribonucleotide reductase%2C barrel domain~TIGRFAM: ribonucleoside-diphosphate reductase%2C alpha subunit gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0370 Trebr_0371 Trebr_0371 Trebr_0371 437606 438793 - dTDP-glucose 4%2C6-dehydratase COGs: COG1088 dTDP-D-glucose 4 6-dehydratase~InterPro IPR001509:IPR005888~KEGG: cni:Calni_1180 dTDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: dTDP-glucose 4%2C6-dehydratase~SPTR: dTDP-glucose 4%2C6-dehydratase%3B~TIGRFAM: dTDP-glucose 4%2C6-dehydratase~IMG reference gene:2504919240~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: dTDP-glucose 4%2C6-dehydratase gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0371 Trebr_0372 Trebr_0372 Trebr_0372 438806 439738 - dTDP-4-dehydrorhamnose reductase COGs: COG1091 dTDP-4-dehydrorhamnose reductase~InterPro IPR005913~KEGG: cni:Calni_1181 dTDP-4-dehydrorhamnose reductase~PFAM: dTDP-4-dehydrorhamnose reductase~PRIAM: dTDP-4-dehydrorhamnose reductase~SPTR: dTDP-4-dehydrorhamnose reductase%3B~TIGRFAM: dTDP-4-dehydrorhamnose reductase~IMG reference gene:2504919241~PFAM: RmlD substrate binding domain~TIGRFAM: dTDP-4-dehydrorhamnose reductase gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0372 Trebr_0373 Trebr_0373 Trebr_0373 439841 440422 - dTDP-4-dehydrorhamnose 3%2C5-epimerase COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase~InterPro IPR000888~KEGG: bhy:BHWA1_02694 dTDP-4-dehydrorhamnose 3%2C5-epimerase~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase related~PRIAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~SPTR: dTDP-4-dehydrorhamnose 3%2C5-epimerase%3B~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase related~IMG reference gene:2504919242~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0373 Trebr_0374 Trebr_0374 Trebr_0374 440431 441306 - glucose-1-phosphate thymidylyltransferase COGs: COG1209 dTDP-glucose pyrophosphorylase~InterPro IPR005835:IPR005907~KEGG: tde:TDE1440 glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase~PRIAM: Glucose-1-phosphate thymidylyltransferase~SPTR: Glucose-1-phosphate thymidylyltransferase%3B~TIGRFAM: Glucose-1-phosphate thymidylyltransferase%2C long form~IMG reference gene:2504919243~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate thymidylyltransferase%2C short form gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0374 Trebr_0375 Trebr_0375 Trebr_0375 441452 442384 - parB-like partition protein COGs: COG1475 transcriptional regulator protein~InterPro IPR003115:IPR004437~KEGG: ssm:Spirs_4300 ParB-like partition protein~PFAM: ParB-like nuclease~SMART: ParB-like nuclease~SPTR: ParB-like partition protein%3B~TIGRFAM: ParB-like partition protein~IMG reference gene:2504919244~PFAM: ParB-like nuclease domain%3B KorB domain~TIGRFAM: ParB-like partition proteins gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0375 Trebr_0376 Trebr_0376 Trebr_0376 442377 443132 - Cobyrinic acid ac-diamide synthase COGs: COG1192 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: tde:TDE0607 ParA family ATPase~PFAM: Cobyrinic acid a%2Cc-diamide synthase~SPTR: ParA family ATPase%3B~IMG reference gene:2504919245~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0376 Trebr_0377 Trebr_0377 Trebr_0377 443219 443563 + hypothetical protein KEGG: sta:STHERM_c13800 hypothetical protein~SPTR: DRTGG domain protein%3B~IMG reference gene:2504919246~PFAM: DRTGG domain gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0377 Trebr_0378 Trebr_0378 Trebr_0378 443581 444960 + hypothetical protein KEGG: csh:Closa_1889 hypothetical protein~SPTR: Methyltransferase%3B~IMG reference gene:2504919247 gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0378 Trebr_0379 Trebr_0379 Trebr_0379 444957 445604 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 COGs: COG0546 phosphatase~InterPro IPR005834:IPR006439~KEGG: cac:CA_C2496 HAD family phosphatase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: HAD-superfamily hydrolase%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~IMG reference gene:2504919248~PFAM: haloacid dehalogenase-like hydrolase gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0379 Trebr_0380 Trebr_0380 Trebr_0380 445988 457156 + hypothetical protein KEGG: sta:STHERM_c01520 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919249 gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0380 Trebr_0381 Trebr_0381 Trebr_0381 457156 462426 + BNR domain-containing protein KEGG: tde:TDE2709 BNR domain-containing protein~SPTR: BNR domain protein%3B~IMG reference gene:2504919250~PFAM: Mo-co oxidoreductase dimerisation domain gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0381 Trebr_0382 Trebr_0382 Trebr_0382 462397 463557 - hypothetical protein IMG reference gene:2504919251 gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0382 Trebr_0383 Trebr_0383 Trebr_0383 463640 464746 + hypothetical protein IMG reference gene:2504919252 gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0383 Trebr_0384 Trebr_0384 Trebr_0384 464739 466163 + putative metal dependent phosphohydrolase COGs: COG2206 HD-GYP domain~KEGG: gme:Gmet_1991 GAF sensor signal transduction histidine kinase~SPTR: GAF sensor signal transduction histidine kinase%3B~IMG reference gene:2504919253 gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0384 Trebr_0385 Trebr_0385 Trebr_0385 466497 467195 + hypothetical protein KEGG: cpy:Cphy_1854 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919255 gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0385 Trebr_0386 Trebr_0386 Trebr_0386 467280 468794 + Catalase COGs: COG0753 Catalase~InterPro IPR018028:IPR010582~KEGG: mla:Mlab_1574 hypothetical protein~PFAM: Catalase related subgroup%3B Catalase-related immune responsive~PRIAM: Catalase~SPTR: Catalase%3B~IMG reference gene:2504919256~PFAM: Catalase%3B Catalase-related immune-responsive gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0386 Trebr_0387 Trebr_0387 Trebr_0387 468899 470278 - Dihydrolipoyl dehydrogenase COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3)~InterPro IPR013027:IPR004099~KEGG: elm:ELI_3758 pyridine nucleotide-disulfide oxidoreductase family protein~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation~PRIAM: Dihydrolipoyl dehydrogenase~SPTR: Possible mercury(II) reductase%3B~IMG reference gene:2504919257~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation domain gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0387 Trebr_0388 Trebr_0388 Trebr_0388 470297 470719 - transcriptional regulator%2C BadM/Rrf2 family COGs: COG1959 transcriptional regulator protein~InterPro IPR000944~KEGG: ele:Elen_0624 transcriptional regulator%2C BadM/Rrf2 family~PFAM: Transcriptional regulator%2C Rrf2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919258~PFAM: Transcriptional regulator~TIGRFAM: Rrf2 family protein gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0388 Trebr_0389 Trebr_0389 Trebr_0389 470723 471115 - Rhodanese-like protein COGs: COG0607 Rhodanese-related sulfurtransferase~InterPro IPR001763~KEGG: bpb:bpr_I2677 rhodanese domain-containing protein~PFAM: Rhodanese-like~SMART: Rhodanese-like~SPTR: Rhodanese domain-containing protein%3B~IMG reference gene:2504919259~PFAM: Rhodanese-like domain gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0389 Trebr_0390 Trebr_0390 Trebr_0390 471230 472216 - PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: tmt:Tmath_0363 transcriptional regulator%2C MarR family~PFAM: Carbohydrate/purine kinase~SPTR: Transcriptional regulator%2C MarR family%3B~IMG reference gene:2504919260~PFAM: pfkB family carbohydrate kinase gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0390 Trebr_0391 Trebr_0391 Trebr_0391 472203 472796 - hypothetical protein KEGG: mac:MA2063 hypothetical protein~SPTR: Predicted protein%3B~IMG reference gene:2504919261 gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0391 Trebr_0392 Trebr_0392 Trebr_0392 472886 473728 + Xylose isomerase domain-containing protein TIM barrel COGs: COG1082 Sugar phosphate isomerase/epimerase~InterPro IPR012307~KEGG: xylose isomerase domain-containing protein~PFAM: Xylose isomerase%2C TIM barrel domain~SPTR: Xylose isomerase domain-containing protein TIM barrel%3B~IMG reference gene:2504919262~PFAM: Xylose isomerase-like TIM barrel gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0392 Trebr_0393 Trebr_0393 Trebr_0393 473799 476375 + CoA-disulfide reductase COGs: COG0446 NAD(FAD)-dependent dehydrogenase~InterPro IPR001763:IPR013027:IPR004099:IPR001455~KEGG: cpy:Cphy_3470 FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation%3B SirA-like~PRIAM: CoA-disulfide reductase~SMART: Rhodanese-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919263~PFAM: Pyridine nucleotide-disulphide oxidoreductase%3B SirA-like protein%3B Rhodanese-like domain%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation domain gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0393 Trebr_0394 Trebr_0394 Trebr_0394 476454 477134 - transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterPro IPR001808:IPR000595~KEGG: cdf:CD0629 putative transcriptional regulator~PFAM: Cyclic nucleotide-binding%3B HTH transcriptional regulator%2C Crp~SMART: HTH transcriptional regulator%2C Crp~SPTR: Possible cAMP regulatory protein%3B~IMG reference gene:2504919264~PFAM: Bacterial regulatory proteins%2C crp family%3B Cyclic nucleotide-binding domain gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0394 Trebr_0395 Trebr_0395 Trebr_0395 477124 478056 - diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160~KEGG: csh:Closa_1863 diguanylate cyclase~PFAM: Diguanylate cyclase%2C predicted~SMART: Diguanylate cyclase%2C predicted~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504919265~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0395 Trebr_0396 Trebr_0396 Trebr_0396 478121 480637 - metal dependent phosphohydrolase COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain~InterPro IPR003660:IPR003607:IPR006674~KEGG: bse:Bsel_0662 metal dependent phosphohydrolase~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain%3B HAMP linker domain~SMART: Metal-dependent phosphohydrolase%2C HD region%3B HAMP linker domain~SPTR: Metal dependent phosphohydrolase%3B~IMG reference gene:2504919266~PFAM: HD domain gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0396 Trebr_0397 Trebr_0397 Trebr_0397 480825 482321 + Glycerol kinase COGs: COG0554 Glycerol kinase~HAMAP: Glycerol kinase~InterPro IPR018484:IPR018485:IPR005999~KEGG: cbe:Cbei_4509 glycerol kinase~PFAM: Carbohydrate kinase%2C FGGY%2C N-terminal%3B Carbohydrate kinase%2C FGGY%2C C-terminal~PRIAM: Glycerol kinase~SPTR: Glycerol kinase%3B~TIGRFAM: Glycerol kinase~IMG reference gene:2504919267~PFAM: FGGY family of carbohydrate kinases%2C N-terminal domain%3B FGGY family of carbohydrate kinases%2C C-terminal domain~TIGRFAM: glycerol kinase gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0397 Trebr_0398 Trebr_0398 Trebr_0398 482568 484655 + glutamine synthetase catalytic region COGs: COG3968 Uncharacterized protein related to glutamine synthetase~InterPro IPR008146~KEGG: cth:Cthe_0196 glutamine synthetase%2C catalytic region~PFAM: Glutamine synthetase%2C catalytic region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919268~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase type III N terminal gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0398 Trebr_0399 Trebr_0399 Trebr_0399 484984 486726 + ammonium transporter COGs: COG0004 Ammonia permease~InterPro IPR001905:IPR002187~KEGG: eel:EUBELI_00740 guanylate cyclase~PFAM: Ammonium transporter%3B Nitrogen regulatory protein PII~SPTR: Ammonium transporter%3B~TIGRFAM: Ammonium transporter~IMG reference gene:2504919269~PFAM: Ammonium Transporter Family%3B Nitrogen regulatory protein P-II~TIGRFAM: ammonium transporter gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0399 Trebr_0400 Trebr_0400 Trebr_0400 486850 489135 + diguanylate cyclase/phosphodiesterase COGs: COG2200 FOG: EAL domain~InterPro IPR000160:IPR001633~KEGG: cdc:CD196_2722 putative signaling protein~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~SPTR: Putative signaling protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504919270~PFAM: EAL domain%3B GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0400 Trebr_0401 Trebr_0401 Trebr_0401 489244 490590 - Phosphoribosylamine--glycine ligase COGs: COG0151 Phosphoribosylamine-glycine ligase~HAMAP: Phosphoribosylglycinamide synthetase~InterPro IPR000115:IPR020562:IPR020561:IPR020560~KEGG: cno:NT01CX_2418 phosphoribosylformylglycinamidine synthase~PFAM: Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C N-domain%3B Phosphoribosylglycinamide synthetase%2C C-domain~PRIAM: Phosphoribosylamine--glycine ligase~SPTR: Phosphoribosylformylglycinamidine synthase%3B~TIGRFAM: Phosphoribosylglycinamide synthetase~IMG reference gene:2504919271~PFAM: Phosphoribosylglycinamide synthetase%2C N domain%3B Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C C domain~TIGRFAM: phosphoribosylamine--glycine ligase gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0401 Trebr_0402 Trebr_0402 Trebr_0402 491421 491618 + pseudogene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0402 Trebr_0403 Trebr_0403 Trebr_0403 492349 495503 - pseudogene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0403 Trebr_0404 Trebr_0404 Trebr_0404 495508 496221 - hypothetical protein KEGG: csh:Closa_4247 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919274 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0404 Trebr_0405 Trebr_0405 Trebr_0405 496208 497596 - hypothetical protein KEGG: csh:Closa_4248 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919275 gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0405 Trebr_0406 Trebr_0406 Trebr_0406 497882 498289 - hypothetical protein IMG reference gene:2504919276 gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0406 Trebr_0407 Trebr_0407 Trebr_0407 498286 499800 - Radical SAM domain protein COGs: COG0535 Fe-S oxidoreductase~InterPro IPR006638:IPR007197~KEGG: ddd:Dda3937_03601 radical SAM domain heme biosynthesis protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain heme biosynthesis protein%3B~IMG reference gene:2504919277~PFAM: Radical SAM superfamily~TIGRFAM: radical SAM additional 4Fe4S-binding domain gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0407 Trebr_0408 Trebr_0408 Trebr_0408 500002 500220 - hypothetical protein IMG reference gene:2504919278 gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0408 Trebr_0409 Trebr_0409 Trebr_0409 500238 501461 - restriction modification system DNA specificity domain protein COGs: COG0732 Restriction endonuclease S subunits~InterPro IPR000055~KEGG: lci:LCK_00904 putative restriction-modification enzyme type I S subunit~PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Putative type-I specificity determinant subunit%3B~IMG reference gene:2504919279~PFAM: Type I restriction modification DNA specificity domain gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0409 Trebr_0410 Trebr_0410 Trebr_0410 501448 502056 - hypothetical protein KEGG: plt:Plut_0642 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919280~PFAM: BRO family%2C N-terminal domain gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0410 Trebr_0411 Trebr_0411 Trebr_0411 502056 503138 - virulence protein COGs: COG3943 Virulence protein~KEGG: chu:CHU_3353 virulence protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919281 gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0411 Trebr_0412 Trebr_0412 Trebr_0412 503201 505801 - type I restriction-modification system%2C M subunit COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR003356:IPR004546~KEGG: hse:Hsero_4561 type I restriction-modification system methyltransferase subunit~PFAM: DNA methylase%2C adenine-specific~SPTR: Type I restriction-modification system methyltransferase subunit protein%3B~TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C M subunit~IMG reference gene:2504919282~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain~TIGRFAM: type I restriction system adenine methylase (hsdM) gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0412 Trebr_0413 Trebr_0413 Trebr_0413 506095 506717 - pseudogene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0413 Trebr_0414 Trebr_0414 Trebr_0414 507195 508748 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: toc:Toce_1077 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504919284~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0414 Trebr_0415 Trebr_0415 Trebr_0415 508792 510972 - sodium/hydrogen exchanger COGs: COG0475 Kef-type K+ transport systems membrane components~InterPro IPR006153:IPR002178~KEGG: ssm:Spirs_3913 sodium/hydrogen exchanger~PFAM: Cation/H+ exchanger%3B Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: Sodium/hydrogen exchanger%3B~IMG reference gene:2504919285~PFAM: Sodium/hydrogen exchanger family%3B Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2~TIGRFAM: PTS system%2C fructose subfamily%2C IIA component gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0415 Trebr_0416 Trebr_0416 Trebr_0416 511088 512434 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: tde:TDE0621 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: MATE efflux family protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504919286~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0416 Trebr_0417 Trebr_0417 Trebr_0417 512458 513819 - UPF0210 protein COGs: COG2848 conserved hypothetical protein~HAMAP: UPF0210 protein~InterPro IPR007841~KEGG: amt:Amet_3399 hypothetical protein~PFAM: Protein of unknown function DUF711~SPTR: UPF0210 protein Amet_3399%3B~IMG reference gene:2504919287~PFAM: Uncharacterized ACR (DUF711) gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0417 Trebr_0418 Trebr_0418 Trebr_0418 513956 515344 - DNA repair protein RadA COGs: COG1066 ATP-dependent serine protease~InterPro IPR003593:IPR004504~KEGG: tde:TDE2517 DNA repair protein RadA~SMART: ATPase%2C AAA+ type%2C core~SPTR: DNA repair protein radA%3B~TIGRFAM: DNA repair protein RadA~IMG reference gene:2504919288~PFAM: KaiC%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: DNA repair protein RadA gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0418 Trebr_0419 Trebr_0419 Trebr_0419 515360 515740 - hypothetical protein KEGG: sta:STHERM_c21820 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919289~PFAM: Protein of unknown function (DUF1312) gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0419 Trebr_0420 Trebr_0420 Trebr_0420 515737 516975 - ROK family protein COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000600~KEGG: ssm:Spirs_1197 ROK family protein~PFAM: ROK~SPTR: ROK family protein%3B~IMG reference gene:2504919290~PFAM: ROK family gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0420 Trebr_0421 Trebr_0421 Trebr_0421 517105 518118 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: sta:STHERM_c15050 transcriptional regulatory protein~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulatory protein%3B~IMG reference gene:2504919291~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0421 Trebr_0422 Trebr_0422 Trebr_0422 518216 519523 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: sta:STHERM_c15040 alpha-glucosides-binding periplasmic protein AglE precursor~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504919292~PFAM: Bacterial extracellular solute-binding protein gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0422 Trebr_0423 Trebr_0423 Trebr_0423 519613 520692 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: sta:STHERM_c15030 transporter~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Transporter%3B~IMG reference gene:2504919293~PFAM: Binding-protein-dependent transport system inner membrane component gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0423 Trebr_0424 Trebr_0424 Trebr_0424 520692 521600 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: sta:STHERM_c15020 transporter~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Transporter%3B~IMG reference gene:2504919294~PFAM: Binding-protein-dependent transport system inner membrane component gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0424 Trebr_0425 Trebr_0425 Trebr_0425 521608 522627 + Fructokinase COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: thx:Thet_1794 PfkB domain-containing protein~PFAM: Carbohydrate/purine kinase~PRIAM: Fructokinase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919295~PFAM: pfkB family carbohydrate kinase gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0425 Trebr_0426 Trebr_0426 Trebr_0426 522624 525806 + beta-phosphoglucomutase COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase)~InterProIPR005196:IPR005195:IPR005194:IPR005834:IPR 010972:IPR010976:IPR006402~KEGG: ssm:Spirs_3639 beta-phosphoglucomutase~PFAM: Glycoside hydrolase family 65%2C central catalytic%3B Glycoside hydrolase family 65%2C N-terminal%3B Glycoside hydrolase%2C family 65%2C C-terminal%3B Haloacid dehalogenase-like hydrolase~PRIAM: Kojibiose phosphorylase.%2C Beta-phosphoglucomutase~SPTR: Beta-phosphoglucomutase%3B~TIGRFAM: Beta-phosphoglucomutase%3B Beta-phosphoglucomutase hydrolase%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~IMG reference gene:2504919296~PFAM: Glycosyl hydrolase family 65%2C C-terminal domain%3B haloacid dehalogenase-like hydrolase%3B Glycosyl hydrolase family 65%2C N-terminal domain%3B Glycosyl hydrolase family 65 central catalytic domain~TIGRFAM: beta-phosphoglucomutase family hydrolase%3B beta-phosphoglucomutase%3B haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0426 Trebr_0427 Trebr_0427 Trebr_0427 526016 526870 - ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: ssm:Spirs_1398 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504919297~PFAM: Binding-protein-dependent transport system inner membrane component gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0427 Trebr_0428 Trebr_0428 Trebr_0428 526872 527771 - ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: ssm:Spirs_2122 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504919298~PFAM: Binding-protein-dependent transport system inner membrane component gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0428 Trebr_0429 Trebr_0429 Trebr_0429 527882 529225 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: sta:STHERM_c02610 putative sugar ABC transporter sugar-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504919299~PFAM: Bacterial extracellular solute-binding protein gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0429 Trebr_0430 Trebr_0430 Trebr_0430 529644 530771 + hypothetical protein IMG reference gene:2504919300 gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0430 Trebr_0431 Trebr_0431 Trebr_0431 530942 532246 - hypothetical protein KEGG: chu:CHU_3514 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919301 gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0431 Trebr_0432 Trebr_0432 Trebr_0432 532236 533366 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: cth:Cthe_1523 glycosyl transferase%2C group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase%2C group 1%3B~IMG reference gene:2504919302~PFAM: Glycosyl transferases group 1 gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0432 Trebr_0433 Trebr_0433 Trebr_0433 533528 535507 + adenylate/guanylate cyclase COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR001054:IPR011623~KEGG: lic:LIC10245 adenylate/guanylate cyclase~PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase%3B Diverse 7TM receptor%2C transmembrane region~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase~SPTR: Adenylate/guanylate cyclase%3B~IMG reference gene:2504919303~PFAM: Adenylate and Guanylate cyclase catalytic domain%3B 7TM diverse intracellular signalling gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0433 Trebr_0434 Trebr_0434 Trebr_0434 535671 536693 + Citrate transporter COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease~InterPro IPR004680~KEGG: btl:BALH_2820 transporter~PFAM: Divalent ion symporter~SPTR: Citrate transporter%3B~IMG reference gene:2504919304~PFAM: Citrate transporter gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0434 Trebr_0435 Trebr_0435 Trebr_0435 536697 537458 + DTW domain containing protein COGs: COG3148 conserved hypothetical protein~InterPro IPR005636~KEGG: ote:Oter_3739 DTW domain-containing protein~PFAM: DTW~SPTR: DTW domain containing protein%3B~IMG reference gene:2504919305~PFAM: DTW domain gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0435 Trebr_0436 Trebr_0436 Trebr_0436 537433 538308 - hypothetical protein IMG reference gene:2504919306 gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0436 Trebr_0437 Trebr_0437 Trebr_0437 538585 539460 + tetracycline resistance leader peptide KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919307~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0437 Trebr_0438 Trebr_0438 Trebr_0438 539581 540612 - glycosyl transferase family 2 InterPro IPR001173~KEGG: pru:PRU_1336 group 2 family glycosyltransferase~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyltransferase%3B~IMG reference gene:2504919308~PFAM: Glycosyl transferase family 2 gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0438 Trebr_0439 Trebr_0439 Trebr_0439 540623 541753 - hypothetical protein KEGG: oih:OB1130 hypothetical protein~SPTR: WbsX%3B~IMG reference gene:2504919309 gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0439 Trebr_0440 Trebr_0440 Trebr_0440 541750 542931 - hypothetical protein KEGG: pdi:BDI_0302 putative lipopolysaccharide biosynthesis related polysaccharide polymerase~SPTR: Predicted protein%3B~IMG reference gene:2504919310 gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0440 Trebr_0441 Trebr_0441 Trebr_0441 542970 544085 - hypothetical protein KEGG: mma:MM_2213 putative glycosyltransferase~SPTR: ORF12 protein%3B~IMG reference gene:2504919311~PFAM: Glycosyl transferases group 1 gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0441 Trebr_0442 Trebr_0442 Trebr_0442 544072 545202 - hypothetical protein KEGG: bth:BT_0042 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919312~PFAM: Polysaccharide pyruvyl transferase gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0442 Trebr_0443 Trebr_0443 Trebr_0443 545204 546940 - thiamine pyrophosphate TPP-binding domain-containing protein COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase~InterPro IPR012001~KEGG: slo:Shew_1408 thiamine pyrophosphate binding domain-containing protein~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP binding region~SPTR: 2-succinyl-6-hydroxy-2%2C 4-cyclohexadiene-1-carboxylate synthase%3B~IMG reference gene:2504919313~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0443 Trebr_0444 Trebr_0444 Trebr_0444 546959 548017 - NAD-dependent epimerase/dehydratase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR001509~KEGG: NAD-dependent epimerase/dehydratase~PFAM: NAD-dependent epimerase/dehydratase~SPTR: NAD dependent epimerase/dehydratase family protein%3B~IMG reference gene:2504919314~PFAM: NAD dependent epimerase/dehydratase family gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0444 Trebr_0445 Trebr_0445 Trebr_0445 548014 549297 - hypothetical protein KEGG: ppd:Ppro_2756 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919315 gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0445 Trebr_0446 Trebr_0446 Trebr_0446 549349 550956 - polysaccharide biosynthesis protein InterPro IPR002797~KEGG: bvu:BVU_2391 putative transmembrane protein~PFAM: Polysaccharide biosynthesis protein~SPTR: Conserved hypothetical transmembrane protein%3B putative transmembrane protein%3B~IMG reference gene:2504919316~PFAM: Polysaccharide biosynthesis protein gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0446 Trebr_0447 Trebr_0447 Trebr_0447 551268 551651 + helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE1170 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504919317~PFAM: Bacteriophage CI repressor helix-turn-helix domain gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0447 Trebr_0448 Trebr_0448 Trebr_0448 551688 552365 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834:IPR006402~KEGG: tpp:TPASS_0158 hypothetical protein~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Pyrimidine 5'-nucleotidase%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~IMG reference gene:2504919318~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED%3B pyrimidine 5'-nucleotidase gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0448 Trebr_0449 Trebr_0449 Trebr_0449 552368 553930 - RNA polymerase%2C sigma 54 subunit%2C RpoN COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog~InterPro IPR000394:IPR007046:IPR007634~KEGG: ssm:Spirs_4048 RNA polymerase%2C sigma 54 subunit%2C RpoN~PFAM: RNA polymerase sigma factor 54%2C DNA-binding%3B RNA polymerase sigma factor 54%3B RNA polymerase sigma factor 54%2C core-binding~SPTR: RNA polymerase%2C sigma 54 subunit%2C RpoN%3B~TIGRFAM: RNA polymerase sigma factor 54~IMG reference gene:2504919319~PFAM: Sigma-54 factor%2C Activator interacting domain (AID)%3B Sigma-54%2C DNA binding domain%3B Sigma-54 factor%2C core binding domain~TIGRFAM: RNA polymerase sigma-54 factor gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0449 Trebr_0450 Trebr_0450 Trebr_0450 553988 555367 + Uncharacterized conserved protein UCP033563 InterPro IPR008323~KEGG: cth:Cthe_3196 hypothetical protein~PFAM: Uncharacterised conserved protein UCP033563~SPTR: Uncharacterized conserved protein UCP033563%3B~IMG reference gene:2504919320~PFAM: Protein of unknown function (DUF1015) gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0450 Trebr_0451 Trebr_0451 Trebr_0451 555637 557172 - Mg chelatase%2C subunit ChlI COGs: COG0606 ATPase with chaperone activity~InterPro IPR000523:IPR004482~KEGG: tde:TDE1995 magnesium chelatase family protein~PFAM: Magnesium chelatase%2C ChlI subunit~SPTR: Magnesium chelatase family protein%3B~TIGRFAM: Mg chelatase-related protein~IMG reference gene:2504919322~PFAM: Magnesium chelatase%2C subunit ChlI%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: Mg chelatase-related protein gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0451 Trebr_0452 Trebr_0452 Trebr_0452 557319 558359 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: ssm:Spirs_0925 transcriptional regulator%2C LacI family~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504919323~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0452 Trebr_0453 Trebr_0453 Trebr_0453 558431 559285 - PHP domain protein COGs: COG0613 metal-dependent phosphoesterase (PHP family)~InterPro IPR003141:IPR004013~KEGG: tde:TDE2618 phosphotransferase domain-containing protein~PFAM: PHP%2C C-terminal~SMART: Polymerase/histidinol phosphatase%2C N-terminal~SPTR: PHP domain protein%3B~IMG reference gene:2504919324~PFAM: PHP domain gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0453 Trebr_0454 Trebr_0454 Trebr_0454 559364 560608 + putative transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterPro IPR000595~KEGG: tde:TDE2616 cyclic nucleotide-binding protein~PFAM: Cyclic nucleotide-binding~SMART: Cyclic nucleotide-binding~SPTR: Cyclic nucleotide-binding protein%3B~IMG reference gene:2504919325~PFAM: Cyclic nucleotide-binding domain gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0454 Trebr_0455 Trebr_0455 Trebr_0455 560893 561789 + transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060:IPR000005~KEGG: cpi:Cpin_3596 transcriptional regulator%2C AraC family~PFAM: Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919327~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family%3B AraC-like ligand binding domain gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0455 Trebr_0456 Trebr_0456 Trebr_0456 561894 564008 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE2549 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504919328~PFAM: HAMP domain%3B Cache domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0456 Trebr_0457 Trebr_0457 Trebr_0457 564065 565594 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: gsu:GSU0683 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer%2C putative%3B~IMG reference gene:2504919329~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0457 Trebr_0458 Trebr_0458 Trebr_0458 565604 566614 + hypothetical protein IMG reference gene:2504919330 gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0458 Trebr_0459 Trebr_0459 Trebr_0459 566611 567342 + metal dependent phosphohydrolase COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain~InterPro IPR003607:IPR006674~KEGG: response regulator~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SMART: Metal-dependent phosphohydrolase%2C HD region~SPTR: Response regulator containing a CheY-like receiver domain and an HD-GYP domain%3B~IMG reference gene:2504919331~PFAM: HD domain gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0459 Trebr_0460 Trebr_0460 Trebr_0460 567518 569020 + sodium/hydrogen exchanger COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain~InterPro IPR006153:IPR006037~KEGG: swo:Swol_1590 potassium/proton antiporter~PFAM: Cation/H+ exchanger%3B Regulator of K+ conductance%2C C-terminal~SPTR: Putative Na+/H+ antiporter%3B~IMG reference gene:2504919332~PFAM: Sodium/hydrogen exchanger family%3B TrkA-C domain gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0460 Trebr_0461 Trebr_0461 Trebr_0461 569050 571011 - ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003593:IPR003439~KEGG: dap:Dacet_0977 ABC transporter related protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504919333~PFAM: ABC transporter gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0461 Trebr_0462 Trebr_0462 Trebr_0462 571111 571908 - Glutamate 5-kinase COGs: COG0263 Glutamate 5-kinase~HAMAP: Glutamate 5-kinase~InterPro IPR001048:IPR005715~KEGG: bpb:bpr_I1299 glutamate 5-kinase ProB~PFAM: Aspartate/glutamate/uridylate kinase~SPTR: Glutamate 5-kinase 2%3B~TIGRFAM: Glutamate 5-kinase%2C ProB-related~IMG reference gene:2504919334~PFAM: Amino acid kinase family~TIGRFAM: glutamate 5-kinase gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0462 Trebr_0463 Trebr_0463 Trebr_0463 572000 572869 + transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: str:Sterm_3036 transcriptional regulator%2C LysR family~PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919335~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family%3B LysR substrate binding domain gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0463 Trebr_0464 Trebr_0464 Trebr_0464 572917 573954 + Protein of unknown function DUF2179 COGs: COG1284 conserved hypothetical protein~InterPro IPR003740:IPR019264~KEGG: bpb:bpr_I1785 hypothetical protein~PFAM: Protein of unknown function DUF2179%3B Protein of unknown function DUF161~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919336~PFAM: Uncharacterized BCR%2C YitT family COG1284%3B Uncharacterized protein conserved in bacteria (DUF2179) gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0464 Trebr_0465 Trebr_0465 Trebr_0465 574016 575749 + flavocytochrome c COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit~InterPro IPR007329:IPR003953:IPR010960~KEGG: ssm:Spirs_3607 flavocytochrome c~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal%3B FMN-binding~PRIAM: Succinate dehydrogenase~SPTR: Flavocytochrome c%3B~TIGRFAM: Flavocytochrome c~IMG reference gene:2504919337~PFAM: FAD binding domain%3B FMN-binding domain~TIGRFAM: flavocytochrome c gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0465 Trebr_0466 Trebr_0466 Trebr_0466 576055 577083 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: ccb:Clocel_3206 transcriptional regulator%2C LacI family~PFAM: Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504919338~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0466 Trebr_0467 Trebr_0467 Trebr_0467 577313 578251 + ABC-type transporter%2C integral membrane subunit COGs: COG4209 ABC-type polysaccharide transport system permease component~InterPro IPR000515~KEGG: gym:GYMC10_4803 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919339~PFAM: Binding-protein-dependent transport system inner membrane component gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0467 Trebr_0468 Trebr_0468 Trebr_0468 578264 579178 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: gym:GYMC10_4804 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Carbohydrate ABC transporter membrane protein 2%2C CUT1 family (TC 3.A.1.1.-)%3B~IMG reference gene:2504919340~PFAM: Binding-protein-dependent transport system inner membrane component gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0468 Trebr_0469 Trebr_0469 Trebr_0469 579218 580639 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: pjd:Pjdr2_6241 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Carbohydrate ABC transporter substrate-binding protein%2C CUT1 family (TC 3.A.1.1.-)%3B~IMG reference gene:2504919341~PFAM: Domain of unknown function (DUF3502)%3B Bacterial extracellular solute-binding protein gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0469 Trebr_0470 Trebr_0470 Trebr_0470 580740 583097 + glycoside hydrolase family 38 KEGG: gym:GYMC10_1991 glycoside hydrolase family 38~SPTR: Glycosyl hydrolase family 38 protein%3B~IMG reference gene:2504919342~PFAM: Glycosyl hydrolases family 38 N-terminal domain gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0470 Trebr_0471 Trebr_0471 Trebr_0471 583223 585001 + Xenobiotic-transporting ATPase COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR003593:IPR001140:IPR003439~KEGG: eel:EUBELI_01593 ATP-binding cassette subfamily B protein~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504919343~PFAM: ABC transporter%3B ABC transporter transmembrane region gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0471 Trebr_0472 Trebr_0472 Trebr_0472 584943 585224 + hypothetical protein IMG reference gene:2504919344 gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0472 Trebr_0473 Trebr_0473 Trebr_0473 585286 586956 + ABC transporter related protein COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA~InterPro IPR003593:IPR003439~KEGG: ABC transporter-like protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504919345~PFAM: ABC transporter gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0473 Trebr_0474 Trebr_0474 Trebr_0474 586953 588068 + glycoside hydrolase family 18 COGs: COG3858 glycosyl hydrolase~InterPro IPR011583:IPR001223~KEGG: ttm:Tthe_1075 glycoside hydrolase family 18~PFAM: Glycoside hydrolase%2C family 18%2C catalytic domain~SMART: Chitinase II~SPTR: Glycoside hydrolase family 18%3B~IMG reference gene:2504919346~PFAM: Glycosyl hydrolases family 18 gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0474 Trebr_0475 Trebr_0475 Trebr_0475 588160 589251 + hypothetical protein SPTR: Major outer membrane protein%3B~IMG reference gene:2504919347 gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0475 Trebr_0476 Trebr_0476 Trebr_0476 589418 590227 - Rhomboid family protein InterPro IPR002610~KEGG: ssm:Spirs_3042 rhomboid family protein~PFAM: Peptidase S54%2C rhomboid~SPTR: Rhomboid family protein%3B~IMG reference gene:2504919348~PFAM: Rhomboid family gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0476 Trebr_0477 Trebr_0477 Trebr_0477 590234 591013 - exodeoxyribonuclease III Xth COGs: COG0708 Exonuclease III~InterPro IPR005135:IPR000097:IPR004808~KEGG: tde:TDE1734 exodeoxyribonuclease III~PFAM: Endonuclease/exonuclease/phosphatase~PRIAM: DNA-(apurinic or apyrimidinic site) lyase~SPTR: Exodeoxyribonuclease III%3B~TIGRFAM: Exodeoxyribonuclease III xth%3B AP endonuclease%2C family 1~IMG reference gene:2504919349~PFAM: Endonuclease/Exonuclease/phosphatase family~TIGRFAM: exodeoxyribonuclease III%3B exodeoxyribonuclease III (xth) gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0477 Trebr_0478 Trebr_0478 Trebr_0478 591270 592574 + Enolase COGs: COG0148 Enolase~HAMAP: Enolase~InterPro IPR000941:IPR020811:IPR020810~KEGG: csh:Closa_2449 enolase~PFAM: Enolase%2C C-terminal%3B Enolase%2C N-terminal~PRIAM: Phosphopyruvate hydratase~SPTR: Enolase 2%3B~TIGRFAM: Enolase~IMG reference gene:2504919350~PFAM: Enolase%2C N-terminal domain%3B Enolase%2C C-terminal TIM barrel domain~TIGRFAM: phosphopyruvate hydratase gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0478 Trebr_0479 Trebr_0479 Trebr_0479 592654 593448 - phospholipid/glycerol acyltransferase COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase~InterPro IPR002123~KEGG: lam:LA2_00370 phospho-beta-glycosidase~PFAM: Phospholipid/glycerol acyltransferase~SMART: Phospholipid/glycerol acyltransferase~SPTR: Phospho-beta-glycosidase%3B~IMG reference gene:2504919351~PFAM: Acyltransferase~TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0479 Trebr_0480 Trebr_0480 Trebr_0480 593450 594703 - hypothetical protein COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis~KEGG: apv:Apar_0835 glycosyl transferase family 2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919352~PFAM: Glycosyl transferase family 2 gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0480 Trebr_0481 Trebr_0481 Trebr_0481 594707 595555 - glycosyl transferase family 8 COGs: COG1442 Lipopolysaccharide biosynthesis protein LPS:glycosyltransferase~InterPro IPR002495~KEGG: lcr:LCRIS_00070 lipopolysaccharide biosynthesis glycosyltransferase~PFAM: Glycosyl transferase%2C family 8~SPTR: Lipopolysaccharide biosynthesis glycosyltransferase%3B~IMG reference gene:2504919353~PFAM: Glycosyl transferase family 8 gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0481 Trebr_0482 Trebr_0482 Trebr_0482 595592 596371 - phospholipid/glycerol acyltransferase InterPro IPR002123~KEGG: ljo:LJ0063 hypothetical protein~PFAM: Phospholipid/glycerol acyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919354 gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0482 Trebr_0483 Trebr_0483 Trebr_0483 596796 597632 + Thymidylate synthase thyX COGs: COG1351 alternative thymidylate synthase~HAMAP: Thymidylate synthase thyX~InterPro IPR003669~KEGG: tde:TDE0311 FAD-dependent thymidylate synthase~PFAM: Thymidylate synthase ThyX~SPTR: Thymidylate synthase thyX%3B~TIGRFAM: Thymidylate synthase ThyX~IMG reference gene:2504919355~PFAM: Thymidylate synthase complementing protein~TIGRFAM: thymidylate synthase%2C flavin-dependent gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0483 Trebr_0484 Trebr_0484 Trebr_0484 597801 599867 - hypothetical protein KEGG: ssm:Spirs_4105 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919356 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0484 Trebr_0485 Trebr_0485 Trebr_0485 599892 600959 - hypothetical protein KEGG: tde:TDE2551 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919357~PFAM: Protein of unknown function (DUF2804) gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0485 Trebr_0486 Trebr_0486 Trebr_0486 601096 602637 + RNA-metabolising metallo-beta-lactamase COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing~InterPro IPR011108~KEGG: tde:TDE1444 metallo-beta-lactamase family protein~PFAM: RNA-metabolising metallo-beta-lactamase~SPTR: Metallo-beta-lactamase family protein%3B~IMG reference gene:2504919358~PFAM: Metallo-beta-lactamase superfamily%3B RNA-metabolising metallo-beta-lactamase%3B Beta-Casp domain gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0486 Trebr_0487 Trebr_0487 Trebr_0487 602687 604075 - 6-phosphofructokinase COGs: COG0205 6-phosphofructokinase~InterPro IPR000023~KEGG: tpp:TPASS_0108 diphosphate--fructose-6-phosphate 1-phosphotransferase~PFAM: Phosphofructokinase~PRIAM: 6-phosphofructokinase~SPTR: Pyrophosphate--fructose 6-phosphate 1-phosphotransferase (Pfk)%3B~IMG reference gene:2504919359~PFAM: Phosphofructokinase gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0487 Trebr_0488 Trebr_0488 Trebr_0488 605356 605967 + hypothetical protein KEGG: pin:Ping_2866 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919366 gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0488 Trebr_0489 Trebr_0489 Trebr_0489 606019 607533 - amidohydrolase COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase~InterPro IPR006680~KEGG: dbr:Deba_2655 dihydroorotase%2C multifunctional complex type~PFAM: Amidohydrolase 1~SPTR: Dihydroorotase%3B~IMG reference gene:2504919367~PFAM: Amidohydrolase family~TIGRFAM: dihydroorotase%2C multifunctional complex type gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0489 Trebr_0490 Trebr_0490 Trebr_0490 607533 607973 - Aspartate carbamoyltransferase regulatory subunit COGs: COG1781 Aspartate carbamoyltransferase regulatory subunit~InterPro IPR020545~KEGG: cbf:CLI_3379 aspartate carbamoyltransferase regulatory subunit~PFAM: Aspartate carbamoyltransferase regulatory subunit%2C N-terminal~SPTR: Aspartate carbamoyltransferase regulatory chain%3B~IMG reference gene:2504919368~PFAM: Aspartate carbamoyltransferase regulatory chain%2C metal binding domain%3B Aspartate carbamoyltransferase regulatory chain%2C allosteric domain~TIGRFAM: aspartate carbamoyltransferase%2C regulatory subunit gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0490 Trebr_0491 Trebr_0491 Trebr_0491 607973 608896 - Aspartate carbamoyltransferase COGs: COG0540 Aspartate carbamoyltransferase catalytic chain~HAMAP: Aspartate carbamoyltransferase~InterPro IPR006132:IPR006131:IPR002082~KEGG: cbt:CLH_2347 aspartate carbamoyltransferase catalytic subunit~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding region~PRIAM: Aspartate carbamoyltransferase~SPTR: Aspartate carbamoyltransferase%3B~TIGRFAM: Aspartate carbamoyltransferase%2C eukaryotic~IMG reference gene:2504919369~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding domain%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain~TIGRFAM: aspartate carbamoyltransferase gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0491 Trebr_0492 Trebr_0492 Trebr_0492 609035 611329 - pseudogene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0492 Trebr_0493 Trebr_0493 Trebr_0493 611499 611975 + hypothetical protein KEGG: bcl:ABC0535 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919371 gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0493 Trebr_0494 Trebr_0494 Trebr_0494 612273 613643 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: csh:Closa_1533 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504919372~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0494 Trebr_0495 Trebr_0495 Trebr_0495 613624 614553 + hypothetical protein KEGG: bpo:BP951000_1114 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919373 gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0495 Trebr_0496 Trebr_0496 Trebr_0496 614646 617042 - glycosyltransferase 36 COGs: COG3459 Cellobiose phosphorylase~InterPro IPR009342:IPR010383:IPR010403~KEGG: cpy:Cphy_3854 glycosyltransferase 36~PFAM: Glycosyltransferase 36%3B Putative carbohydrate binding%3B Glycosyltransferase 36 associated~SPTR: Glycosyltransferase 36%3B~IMG reference gene:2504919374~PFAM: Glycosyltransferase family 36%3B Putative carbohydrate binding domain%3B Protein of unknown function%2C DUF608%3B Glycosyltransferase 36 associated family gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0496 Trebr_0497 Trebr_0497 Trebr_0497 617272 617781 - hypothetical protein KEGG: tde:TDE0118 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919375~PFAM: FlgN protein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0497 Trebr_0498 Trebr_0498 Trebr_0498 617786 618226 - flagellar protein FliS COGs: COG1516 Flagellin-specific chaperone FliS~InterPro IPR003713~KEGG: tde:TDE0119 flagellar protein FliS~PFAM: Flagellar protein FliS~SPTR: Flagellar protein FliS%3B~TIGRFAM: Flagellar protein FliS~IMG reference gene:2504919376~PFAM: Flagellar protein FliS~TIGRFAM: flagellar biosynthetic protein FliS gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0498 Trebr_0499 Trebr_0499 Trebr_0499 618362 620344 + ATP-dependent metalloprotease FtsH COGs: COG0465 ATP-dependent Zn protease~InterProIPR003593:IPR011546:IPR003959:IPR000642:IPR 005936~KEGG: tde:TDE0470 cell division protein FtsH~PFAM: ATPase%2C AAA-type%2C core%3B Peptidase M41%2C FtsH extracellular%3B Peptidase M41~PRIAM: Microtubule-severing ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Cell division protease FtsH homolog%3B~TIGRFAM: Peptidase M41%2C FtsH~IMG reference gene:2504919377~PFAM: FtsH Extracellular%3B Peptidase family M41%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent metalloprotease FtsH gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0499 Trebr_0500 Trebr_0500 Trebr_0500 620522 621910 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: cpy:Cphy_3019 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: MATE efflux family protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504919378~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0500 Trebr_0501 Trebr_0501 Trebr_0501 622013 622282 - ACT domain-containing protein COGs: COG3830 ACT domain-containing protein~HAMAP: UPF0237 protein~InterPro IPR002912~KEGG: hor:Hore_14440 hypothetical protein~PFAM: Amino acid-binding ACT~SPTR: UPF0237 protein POTG_03406%3B~IMG reference gene:2504919379~PFAM: ACT domain gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0501 Trebr_0502 Trebr_0502 Trebr_0502 622476 623714 - metal-dependent phosphohydrolase HD sub domain protein COGs: COG0232 dGTP triphosphohydrolase~InterPro IPR003607:IPR006674~KEGG: clj:CLJU_c04120 putative deoxyguanosinetriphosphate triphosphohydrolase~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SMART: Metal-dependent phosphohydrolase%2C HD region~SPTR: Putative deoxyguanosinetriphosphate triphosphohydrolase%3B~IMG reference gene:2504919380~PFAM: HD domain gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0502 Trebr_0503 Trebr_0503 Trebr_0503 623769 626384 + hypothetical protein KEGG: ssm:Spirs_2256 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919381 gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0503 Trebr_0504 Trebr_0504 Trebr_0504 626485 627423 - cysteine synthase A COGs: COG0031 Cysteine synthase~InterPro IPR001926:IPR005856:IPR005859~KEGG: csh:Closa_2921 cysteine synthase A~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~PRIAM: Cysteine synthase~SPTR: Cysteine synthase%3B~TIGRFAM: Cysteine synthase A%3B Cysteine synthase K/M~IMG reference gene:2504919382~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: cysteine synthase A%3B cysteine synthases gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0504 Trebr_0505 Trebr_0505 Trebr_0505 627769 629808 + methyl-accepting chemotaxis sensory transducer with Cache sensor COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR004010:IPR003660~KEGG: geo:Geob_2266 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain%3B Cache~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2504919383~PFAM: HAMP domain%3B Cache domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0505 Trebr_0506 Trebr_0506 Trebr_0506 629783 630508 + hypothetical protein KEGG: coc:Coch_1988 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919384~PFAM: DNA alkylation repair enzyme gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0506 Trebr_0507 Trebr_0507 Trebr_0507 630574 630906 + ATP-dependent Clp protease adapter protein clpS COGs: COG2127 conserved hypothetical protein~HAMAP: ATP-dependent Clp protease adapter protein clpS~InterPro IPR003769~KEGG: sta:STHERM_c12620 ATP-dependent Clp protease adaptor protein ClpS~PFAM: Adaptor protein ClpS%2C core~SPTR: ATP-dependent Clp protease adaptor protein clpS%3B~IMG reference gene:2504919385~PFAM: ATP-dependent Clp protease adaptor protein ClpS gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0507 Trebr_0508 Trebr_0508 Trebr_0508 630903 633494 + ATP-dependent Clp protease%2C ATP-binding subunit clpA COGs: COG0542 ATPase with chaperone activity ATP-binding subunit~InterProIPR003593:IPR004176:IPR003959:IPR013093:IPR 019489:IPR013461~KEGG: tde:TDE2124 ATP-dependent Clp protease%2C ATP-binding subunit ClpA~PFAM: ATPase associated with various cellular activities%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent Clp protease%2C ATP-binding subunit ClpA%3B~TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA~IMG reference gene:2504919386~PFAM: AAA domain (Cdc48 subfamily)%3B Clp amino terminal domain%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0508 Trebr_0509 Trebr_0509 Trebr_0509 633487 634203 + Leucyl/phenylalanyl-tRNA--protein transferase COGs: COG2360 Leu/Phe-tRNA-protein transferase~HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase~InterPro IPR004616~KEGG: ank:AnaeK_0840 leucyl/phenylalanyl-tRNA--protein transferase~PFAM: Leucyl/phenylalanyl-tRNA-protein transferase~PRIAM: Leucyltransferase~SPTR: Leucyl/phenylalanyl-tRNA--protein transferase%3B~TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase~IMG reference gene:2504919387~PFAM: Leucyl/phenylalanyl-tRNA protein transferase~TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0509 Trebr_0510 Trebr_0510 Trebr_0510 634309 635454 - Site-specific DNA-methyltransferase (adenine-specific) COGs: COG3392 Adenine-specific DNA methylase~InterPro IPR012327~KEGG: cco:CCC13826_1858 D12 class N6 adenine-specific DNA methyltransferase superfamily protein~PFAM: D12 class N6 adenine-specific DNA methyltransferase~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: D12 class N6 adenine-specific DNA methyltransferase%3B~IMG reference gene:2504919388~PFAM: D12 class N6 adenine-specific DNA methyltransferase gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0510 Trebr_0511 Trebr_0511 Trebr_0511 635451 636158 - LrgB family protein COGs: COG1346 Putative effector of murein hydrolase~InterPro IPR007300~KEGG: cno:NT01CX_0755 LrgB family protein~PFAM: LrgB-like protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919389~PFAM: LrgB-like family gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0511 Trebr_0512 Trebr_0512 Trebr_0512 636155 636547 - LrgA family protein COGs: COG1380 Putative effector of murein hydrolase LrgA~InterPro IPR005538~KEGG: ctc:CTC01825 putative murein hydrolase exporter~PFAM: LrgA~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919390~PFAM: LrgA family gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0512 Trebr_0513 Trebr_0513 Trebr_0513 636729 638075 + Glutamate dehydrogenase (NADP(+)) COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase~InterPro IPR006097:IPR006096~KEGG: amu:Amuc_2051 glutamate dehydrogenase~PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal%3B Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation region~PRIAM: Glutamate dehydrogenase (NADP(+))~SPTR: Glutamate dehydrogenase (NADP(+))%3B~IMG reference gene:2504919391~PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase%3B Glu/Leu/Phe/Val dehydrogenase%2C dimerisation domain gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0513 Trebr_0514 Trebr_0514 Trebr_0514 638272 639285 + Cache domain protein InterPro IPR004089:IPR004010~KEGG: hmo:HM1_1061 methyl-accepting chemotaxis protein~PFAM: Cache%3B Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504919392~PFAM: Cache domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0514 Trebr_0515 Trebr_0515 Trebr_0515 639343 640608 + O-acetylhomoserine/O-acetylserine sulfhydrylase COGs: COG2873 O-acetylhomoserine sulfhydrylase~InterPro IPR000277:IPR006235~KEGG: O-acetylhomoserine/O-acetylserine sulfhydrylase~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme~PRIAM: Cysteine synthase~SPTR: O-acetylhomoserine/O-acetylserine sulfhydrylase%3B~TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase~IMG reference gene:2504919393~PFAM: Cys/Met metabolism PLP-dependent enzyme~TIGRFAM: OAH/OAS sulfhydrylase gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0515 Trebr_0516 Trebr_0516 Trebr_0516 640618 641403 + histidinol phosphate phosphatase HisJ family protein COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family~KEGG: tde:TDE0796 histidinol phosphate phosphatase HisJ family protein~SPTR: Histidinol phosphate phosphatase HisJ family protein%3B~IMG reference gene:2504919394~TIGRFAM: histidinol phosphate phosphatase HisJ family gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0516 Trebr_0517 Trebr_0517 Trebr_0517 641447 641809 - protein of unknown function DUF1622 InterPro IPR012427~KEGG: bth:BT_0170 hypothetical protein~PFAM: Protein of unknown function DUF1622~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919395~PFAM: Protein of unknown function (DUF1622) gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0517 Trebr_0518 Trebr_0518 Trebr_0518 641829 642236 - 4-hydroxybenzoyl-CoA thioesterase COGs: COG0824 thioesterase~InterPro IPR006683:IPR006684~KEGG: tde:TDE2225 thioesterase family protein~PFAM: Thioesterase superfamily~SPTR: Thioesterase family protein%3B~TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase~IMG reference gene:2504919396~PFAM: Thioesterase superfamily~TIGRFAM: acyl-CoA thioester hydrolase%2C YbgC/YbaW family gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0518 Trebr_0519 Trebr_0519 Trebr_0519 642375 645107 - hypothetical protein KEGG: tde:TDE2611 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919397 gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0519 Trebr_0520 Trebr_0520 Trebr_0520 645226 646494 + GTP-binding proten HflX COGs: COG2262 GTPase~InterPro IPR002917:IPR016496:IPR005225~KEGG: ssm:Spirs_3087 GTP-binding protein HflX~PFAM: GTP-binding protein%2C HSR1-related~SPTR: GTP-binding proten HflX%3B~TIGRFAM: GTP-binding protein%2C HflX%3B Small GTP-binding protein~IMG reference gene:2504919398~PFAM: GTPase of unknown function~TIGRFAM: GTP-binding protein HflX%3B small GTP-binding protein domain gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0520 Trebr_0521 Trebr_0521 Trebr_0521 646522 646995 + flagellar basal body-associated protein FliL InterPro IPR005503~KEGG: tde:TDE2322 flagellar protein FliL-related protein~PFAM: Flagellar basal body-associated protein FliL~SPTR: Orf protein%3B~IMG reference gene:2504919399~PFAM: Flagellar basal body-associated protein FliL gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0521 Trebr_0522 Trebr_0522 Trebr_0522 647142 647498 + hypothetical protein KEGG: tde:TDE2321 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919400 gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0522 Trebr_0523 Trebr_0523 Trebr_0523 647485 648060 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog~InterPro IPR007627:IPR013249:IPR014284~KEGG: tde:TDE2320 RNA polymerase sigma-24 factor%2C putative~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma factor 70%2C region 4 type 2~SPTR: RNA polymerase sigma-24 factor%2C putative%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504919401~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0523 Trebr_0524 Trebr_0524 Trebr_0524 648072 648539 + hypothetical protein KEGG: tde:TDE2319 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919402 gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0524 Trebr_0525 Trebr_0525 Trebr_0525 648598 650895 - UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR000212~KEGG: tde:TDE2335 ATP-dependent DNA helicase UvrD~PFAM: DNA helicase%2C UvrD/REP type~SPTR: ATP-dependent DNA helicase PcrA%3B~IMG reference gene:2504919403~PFAM: UvrD/REP helicase gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0525 Trebr_0526 Trebr_0526 Trebr_0526 650910 652436 - Ribosomal protein S12 methylthiotransferase rimO COGs: COG0621 2-methylthioadenine synthetase~HAMAP: Ribosomal protein S12 methylthiotransferase RimO~InterProIPR005840:IPR006638:IPR013848:IPR007197:IPR 005839~KEGG: tde:TDE2609 putative tRNA modifying protein~PFAM: Methylthiotransferase%2C N-terminal%3B Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO%3B Methylthiotransferase~IMG reference gene:2504919404~PFAM: Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: ribosomal protein S12 methylthiotransferase RimO%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0526 Trebr_0527 Trebr_0527 Trebr_0527 652429 653514 - hypothetical protein COGs: COG1426 conserved hypothetical protein~KEGG: tde:TDE2608 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919405 gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0527 Trebr_0528 Trebr_0528 Trebr_0528 653531 654205 - outer membrane lipoprotein carrier protein LolA COGs: COG2834 Outer membrane lipoprotein-sorting protein~InterPro IPR004564~KEGG: tpp:TPASS_0333 hypothetical protein~PFAM: Outer membrane lipoprotein carrier protein LolA~SPTR: Outer membrane lipoprotein carrier protein LolA%3B~IMG reference gene:2504919406~PFAM: Outer membrane lipoprotein carrier protein LolA gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0528 Trebr_0529 Trebr_0529 Trebr_0529 654403 656136 - Adenine deaminase COGs: COG1001 Adenine deaminase~HAMAP: Adenine deaminase~InterPro IPR006680:IPR006679~KEGG: dps:DP1374 adenine deaminase~PFAM: Amidohydrolase 1~PRIAM: Adenine deaminase~SPTR: Adenine deaminase 1%3B~TIGRFAM: Adenine deaminase~IMG reference gene:2504919407~PFAM: Amidohydrolase family~TIGRFAM: adenine deaminase gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0529 Trebr_0530 Trebr_0530 Trebr_0530 656133 657344 - putative signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR003594~KEGG: ssm:Spirs_2663 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like~SMART: ATP-binding region%2C ATPase-like~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504919408~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0530 Trebr_0531 Trebr_0531 Trebr_0531 657412 657885 + hypothetical protein IMG reference gene:2504919409 gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0531 Trebr_0532 Trebr_0532 Trebr_0532 657880 658575 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR001789:IPR000792~KEGG: mpt:Mpe_A1026 response regulator protein~PFAM: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver region~SMART: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver region~SPTR: Response regulator protein%3B~IMG reference gene:2504919410~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0532 Trebr_0533 Trebr_0533 Trebr_0533 658727 659683 + Sulphatase-modifying factor protein InterPro IPR005532~KEGG: cpy:Cphy_2106 hypothetical protein~PFAM: Sulphatase-modifying factor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919411~PFAM: Formylglycine-generating sulfatase enzyme gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0533 Trebr_0534 Trebr_0534 Trebr_0534 659776 660780 + Sulphatase-modifying factor protein InterPro IPR005532~KEGG: tde:TDE2145 hypothetical protein~PFAM: Sulphatase-modifying factor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919412~PFAM: Formylglycine-generating sulfatase enzyme gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0534 Trebr_0535 Trebr_0535 Trebr_0535 660991 662289 + protein serine/threonine phosphatase COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR001932:IPR010822~KEGG: dal:Dalk_1277 protein serine/threonine phosphatase~PFAM: Sporulation stage II%2C protein E C-terminal~SMART: Protein phosphatase 2C-related~SPTR: Protein serine/threonine phosphatase%3B~IMG reference gene:2504919413~PFAM: Stage II sporulation protein E (SpoIIE) gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0535 Trebr_0536 Trebr_0536 Trebr_0536 662478 662720 + hypothetical protein IMG reference gene:2504919414 gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0536 Trebr_0537 Trebr_0537 Trebr_0537 662695 663858 - ABC-type transporter%2C integral membrane subunit COGs: COG4214 ABC-type xylose transport system permease component~InterPro IPR001851~KEGG: cst:CLOST_0544 D-xylose transporter subunit %3B membrane component of ABC superfamily~PFAM: Bacterial inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2504919415~PFAM: Branched-chain amino acid transport system / permease component gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0537 Trebr_0538 Trebr_0538 Trebr_0538 663897 665417 - Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: cag:Cagg_2577 ABC transporter-like protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~IMG reference gene:2504919416~PFAM: ABC transporter gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0538 Trebr_0539 Trebr_0539 Trebr_0539 665497 666597 - ribose ABC transporter (ribose-binding protein) COGs: COG4213 ABC-type xylose transport system periplasmic component~KEGG: cst:CLOST_0542 ribose ABC transporter (ribose-binding protein)~SPTR: Periplasmic sugar-binding protein%3B~IMG reference gene:2504919417~PFAM: family gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0539 Trebr_0540 Trebr_0540 Trebr_0540 666850 667923 - D-xylose ABC transporter%2C periplasmic substrate-binding protein COGs: COG4213 ABC-type xylose transport system periplasmic component~KEGG: pjd:Pjdr2_0976 D-xylose ABC transporter%2C periplasmic substrate-binding protein~SPTR: Periplasmic binding protein/LacI transcriptional regulator%3B~IMG reference gene:2504919418~PFAM: family~TIGRFAM: D-xylose ABC transporter%2C substrate-binding protein gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0540 Trebr_0541 Trebr_0541 Trebr_0541 668127 669695 - two component transcriptional regulator%2C AraC family COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789:IPR018060:IPR000005~KEGG: cpy:Cphy_1583 two component AraC family transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain%3B Signal transduction response regulator%2C receiver region~SPTR: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain%3B~IMG reference gene:2504919419~PFAM: Response regulator receiver domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0541 Trebr_0542 Trebr_0542 Trebr_0542 669688 671166 - putative signal transduction histidine kinase COGs: COG3275 Putative regulator of cell autolysis~InterPro IPR003660:IPR010559:IPR003594~KEGG: bpb:bpr_I1170 two component system histidine kinase~PFAM: Signal transduction histidine kinase%2C internal region%3B HAMP linker domain%3B ATP-binding region%2C ATPase-like~SMART: HAMP linker domain~SPTR: Two component system histidine kinase%3B~IMG reference gene:2504919420~PFAM: Histidine kinase%3B HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0542 Trebr_0543 Trebr_0543 Trebr_0543 671163 672149 - hypothetical protein KEGG: bpb:bpr_I1169 sugar ABC transporter substrate-binding protein~SPTR: Sugar ABC transporter substrate-binding protein%3B~IMG reference gene:2504919421 gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0543 Trebr_0544 Trebr_0544 Trebr_0544 672351 673208 + transcriptional regulator%2C AraC family COGs: COG3708 conserved hypothetical protein~InterPro IPR018060:IPR000005:IPR010499~KEGG: cdf:CD1883 AraC family transcription regulator~PFAM: Bacterial transcription activator%2C effector binding%3B Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504919422~PFAM: Bacterial transcription activator%2C effector binding domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0544 Trebr_0545 Trebr_0545 Trebr_0545 673360 674199 - ABC-type transporter%2C integral membrane subunit COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter~InterPro IPR003339~KEGG: cpf:CPF_1834 putative cobalt ABC transporter%2C permease protein~PFAM: Cobalt transport protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919423~PFAM: Cobalt transport protein gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0545 Trebr_0546 Trebr_0546 Trebr_0546 674189 675901 - Monosaccharide-transporting ATPase COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase~InterPro IPR003593:IPR003439~KEGG: bpb:bpr_I2067 ABC transporter ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATPase components of various ABC-type transport systems%2C contain duplicated ATPase%3B~IMG reference gene:2504919424~PFAM: ABC transporter%3B ATP-binding cassette cobalt transporter gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0546 Trebr_0547 Trebr_0547 Trebr_0547 675934 676482 - UPF0397 protein COGs: COG4720 membrane protein~HAMAP: UPF0397 protein~InterPro IPR009825~KEGG: bpb:bpr_I2068 hypothetical protein~PFAM: Protein of unknown function DUF1393~SPTR: UPF0397 protein RUMOBE_00298%3B~IMG reference gene:2504919425~PFAM: Protein of unknown function (DUF1393) gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0547 Trebr_0548 Trebr_0548 Trebr_0548 676530 677384 - protein of unknown function DUF62 COGs: COG1912 conserved hypothetical protein~InterPro IPR002747~KEGG: bpu:BPUM_3680 hypothetical protein~PFAM: Protein of unknown function DUF62~SPTR: Putative Molybdate/tungstate binding protein%3B~IMG reference gene:2504919426~PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0548 Trebr_0549 Trebr_0549 Trebr_0549 677585 679294 + Bifunctional purine biosynthesis protein purH COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)~HAMAP: Bifunctional purine biosynthesis protein purH~InterPro IPR013982:IPR011607~KEGG: bhy:BHWA1_02509 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase~PFAM: AICARFT/IMPCHase bienzyme%2C formylation region%3B MGS-like~PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase~SMART: AICARFT/IMPCHase bienzyme%2C formylation region~SPTR: Bifunctional purine biosynthesis protein purH%3B~IMG reference gene:2504919427~PFAM: AICARFT/IMPCHase bienzyme%3B MGS-like domain gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0549 Trebr_0550 Trebr_0550 Trebr_0550 679306 680376 + Phospho-N-acetylmuramoyl-pentapeptide-transferase COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase~InterPro IPR018481~KEGG: tde:TDE2249 phospho-N-acetylmuramoyl-pentapeptide-transferase~PFAM: Glycosyl transferase%2C family 4%2C conserved region~PRIAM:Phospho-N-acetylmuramoyl-pentapeptide-transfe rase~SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase%3B~IMG reference gene:2504919428~PFAM: Glycosyl transferase family 4 gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0550 Trebr_0551 Trebr_0551 Trebr_0551 680463 681767 + putative lipoprotein KEGG: tde:TDE1404 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504919429 gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0551 Trebr_0552 Trebr_0552 Trebr_0552 681776 683824 + ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003593:IPR003439~KEGG: tde:TDE1403 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504919430~PFAM: ABC transporter gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0552 Trebr_0553 Trebr_0553 Trebr_0553 683931 685838 - peptidase C11 clostripain InterPro IPR005077~KEGG: cth:Cthe_0249 peptidase C11%2C clostripain~PFAM: Peptidase C11%2C clostripain~SPTR: Peptidase C11 clostripain%3B~IMG reference gene:2504919431~PFAM: Clostripain family gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0553 Trebr_0554 Trebr_0554 Trebr_0554 686049 687029 + UDP-glucose 4-epimerase COGs: COG1087 UDP-glucose 4-epimerase~InterPro IPR001509:IPR005886~KEGG: cte:CT0024 UDP-glucose 4-epimerase~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: UDP-glucose 4-epimerase~SPTR: UDP-glucose 4-epimerase%3B~TIGRFAM: UDP-glucose 4-epimerase~IMG reference gene:2504919432~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: UDP-glucose-4-epimerase gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0554 Trebr_0555 Trebr_0555 Trebr_0555 687029 688258 + acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase~InterPro IPR002933:IPR011650:IPR010182~KEGG: tde:TDE0068 diaminopimelate aminotransferase~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation~SPTR: Succinyl-diaminopimelate desuccinylase%3B~TIGRFAM: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase~IMG reference gene:2504919433~PFAM: Peptidase family M20/M25/M40%3B Peptidase dimerisation domain~TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0555 Trebr_0556 Trebr_0556 Trebr_0556 688328 688945 + hypothetical protein KEGG: emi:Emin_0189 hypothetical protein~SPTR: Uncharacterized proteobacterial lipoprotein%3B~IMG reference gene:2504919434~TIGRFAM: uncharacterized proteobacterial lipoprotein gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0556 Trebr_0557 Trebr_0557 Trebr_0557 688945 690279 + hypothetical protein COGs: COG3014 conserved hypothetical protein~KEGG: cts:Ctha_1249 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919435 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0557 Trebr_0558 Trebr_0558 Trebr_0558 690267 691301 + hypothetical protein KEGG: nde:NIDE1649 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919436 gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0558 Trebr_0559 Trebr_0559 Trebr_0559 691321 693561 + peptidase U32 COGs: COG0826 Collagenase and related protease~InterPro IPR001539~KEGG: tde:TDE0071 U32 family peptidase~PFAM: Peptidase U32~SPTR: Peptidase%2C U32 family%3B~IMG reference gene:2504919437~PFAM: Peptidase family U32 gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0559 Trebr_0560 Trebr_0560 Trebr_0560 693741 694208 - single-strand binding protein COGs: COG0629 Single-stranded DNA-binding protein~InterPro IPR000424:IPR011344~KEGG: ssm:Spirs_3718 single-strand binding protein~PFAM: Primosome PriB/single-strand DNA-binding~SPTR: Single-stranded DNA-binding protein%3B~TIGRFAM: Single-strand DNA-binding~IMG reference gene:2504919438~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0560 Trebr_0561 Trebr_0561 Trebr_0561 694306 696234 - hypothetical protein KEGG: tde:TDE0585 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919439 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0561 Trebr_0562 Trebr_0562 Trebr_0562 696387 697268 + NAD-dependent deacetylase COGs: COG0846 NAD-dependent protein deacetylase SIR2 family~HAMAP: NAD-dependent deacetylase~InterPro IPR003000~KEGG: elm:ELI_2771 NAD-dependent protein deacetylase~PFAM: NAD-dependent histone deacetylase%2C silent information regulator Sir2~SPTR: NAD-dependent protein deacetylases%2C SIR2 family%3B~IMG reference gene:2504919440~PFAM: Sir2 family gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0562 Trebr_0563 Trebr_0563 Trebr_0563 697287 698939 - Inorganic diphosphatase COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase~InterPro IPR000644:IPR010766:IPR001667~KEGG: gur:Gura_4157 putative manganese-dependent inorganic pyrophosphatase~PFAM: Cystathionine beta-synthase%2C core%3B DRTGG%3B Phosphoesterase%2C RecJ-like~PRIAM: Inorganic diphosphatase~SPTR: Inorganic diphosphatase%3B~IMG reference gene:2504919441~PFAM: DRTGG domain%3B DHH family%3B CBS domain%3B DHHA2 domain gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0563 Trebr_0564 Trebr_0564 Trebr_0564 699028 699432 - protein of unknown function DUF296 COGs: COG1661 DNA-binding protein with PD1-like DNA-binding motif~InterPro IPR005175~KEGG: ipo:Ilyop_0746 protein of unknown function DUF296~PFAM: Protein of unknown function DUF296~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504919442~PFAM: Domain of unknown function (DUF296) gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0564 Trebr_0565 Trebr_0565 Trebr_0565 699743 701305 + 4-alpha-glucanotransferase COGs: COG1640 4-alpha-glucanotransferase~InterPro IPR003385~KEGG: ssm:Spirs_4115 4-alpha-glucanotransferase~PFAM: Glycoside hydrolase%2C family 77~PRIAM: 4-alpha-glucanotransferase~SPTR: 4-alpha-glucanotransferase%3B~TIGRFAM: Glycoside hydrolase%2C family 77~IMG reference gene:2504919443~PFAM: 4-alpha-glucanotransferase~TIGRFAM: 4-alpha-glucanotransferase gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0565 Trebr_0566 Trebr_0566 Trebr_0566 701317 702051 + pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: sli:Slin_2869 pseudouridine synthase%2C RluA family~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504919444~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0566 Trebr_0567 Trebr_0567 Trebr_0567 702260 703558 + cytochrome c biogenesis protein transmembrane region COGs: COG0785 Cytochrome c biogenesis protein~InterPro IPR003834:IPR000866~KEGG: ele:Elen_0625 cytochrome c biogenesis protein transmembrane region~PFAM: Cytochrome c assembly protein%2C transmembrane region%3B Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919445~PFAM: AhpC/TSA family%3B Cytochrome C biogenesis protein transmembrane region gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0567 Trebr_0568 Trebr_0568 Trebr_0568 703648 704406 - hypothetical protein KEGG: ssm:Spirs_2341 hypothetical protein~SPTR: Putative membrane protein%3B~IMG reference gene:2504919446 gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0568 Trebr_0569 Trebr_0569 Trebr_0569 704497 704952 + transcriptional regulator%2C MarR family COGs: COG1846 Transcriptional regulators~InterPro IPR000835~KEGG: gem:GM21_0359 transcriptional regulator%2C MarR family~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR~SPTR: Transcriptional regulator%2C MarR family%3B~IMG reference gene:2504919447~PFAM: MarR family gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0569 Trebr_0570 Trebr_0570 Trebr_0570 705074 706150 + basic membrane lipoprotein COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein~InterPro IPR003760~KEGG: tde:TDE0951 putative lipoprotein~PFAM: Basic membrane lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504919448~PFAM: Basic membrane protein gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0570 Trebr_0571 Trebr_0571 Trebr_0571 706184 707737 + Monosaccharide-transporting ATPase COGs: COG3845 ABC-type uncharacterized transport systems ATPase components~InterPro IPR003593:IPR003439~KEGG: kra:Krad_2122 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~IMG reference gene:2504919449~PFAM: ABC transporter gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0571 Trebr_0572 Trebr_0572 Trebr_0572 707734 708795 + ABC-type transporter%2C integral membrane subunit COGs: COG4603 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: tde:TDE0953 branched-chain amino acid ABC transporter%2C permease protein~PFAM: Bacterial inner-membrane translocator~SPTR: Branched-chain amino acid ABC transporter%2C permease protein%3B~IMG reference gene:2504919450~PFAM: Branched-chain amino acid transport system / permease component gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0572 Trebr_0573 Trebr_0573 Trebr_0573 708797 709624 + ABC-type transporter%2C integral membrane subunit COGs: COG1079 ABC-type transport system permease component~InterPro IPR001851~KEGG: tde:TDE0954 branched-chain amino acid ABC transporter%2C permease protein~PFAM: Bacterial inner-membrane translocator~SPTR: Branched-chain amino acid ABC transporter%2C permease protein%3B~IMG reference gene:2504919451~PFAM: Branched-chain amino acid transport system / permease component gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0573 Trebr_0574 Trebr_0574 Trebr_0574 709628 710488 - NGG1p interacting factor 3 protein%2C NIF3 COGs: COG0327 conserved hypothetical protein~InterPro IPR002678~KEGG: cdf:CD0672 hypothetical protein~PFAM: NGG1p interacting factor 3%2C NIF3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919452~PFAM: NIF3 (NGG1p interacting factor 3) gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0574 Trebr_0575 Trebr_0575 Trebr_0575 710573 712603 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: sta:STHERM_c11590 hypothetical protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919453~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0575 Trebr_0576 Trebr_0576 Trebr_0576 713124 714728 - Lysyl-tRNA synthetase COGs: COG1384 Lysyl-tRNA synthetase (class I)~HAMAP: Lysyl-tRNA synthetase%2C class I%2C archaeal-type~InterPro IPR020756:IPR020754:IPR002904~KEGG: tde:TDE2553 lysyl-tRNA synthetase~PFAM: Lysyl-tRNA synthetase%2C class Ic~PRIAM: Lysine--tRNA ligase~SPTR: Lysyl-tRNA synthetase%3B~TIGRFAM: Lysyl-tRNA synthetase%2C class I~IMG reference gene:2504919454~PFAM: tRNA synthetases class I (K)~TIGRFAM: lysyl-tRNA synthetase%2C archaeal and spirochete gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0576 Trebr_0577 Trebr_0577 Trebr_0577 715089 716987 + DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterPro IPR014001:IPR001650:IPR011545~KEGG: tde:TDE2109 DEAD-box ATP dependent DNA helicase~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: DEAD/DEAH box helicase%3B~IMG reference gene:2504919455~PFAM: Helicase conserved C-terminal domain%3B DbpA RNA binding domain%3B DEAD/DEAH box helicase gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0577 Trebr_0578 Trebr_0578 Trebr_0578 716988 717899 - hypothetical protein KEGG: ssm:Spirs_0543 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919456 gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0578 Trebr_0579 Trebr_0579 Trebr_0579 717947 719461 - Fibronectin-binding A domain protein COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP~InterPro IPR008616:IPR008532~KEGG: tde:TDE1579 fibronectin/fibrinogen-binding protein%2C internal deletion~PFAM: Fibronectin-binding A%2C N-terminal%3B Protein of unknown function DUF814~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919457~PFAM: Domain of unknown function (DUF814)%3B Fibronectin-binding protein A N-terminus (FbpA) gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0579 Trebr_0580 Trebr_0580 Trebr_0580 719699 720364 - protein P26 KEGG: tpp:TPASS_0989 protein P26~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919458 gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0580 Trebr_0581 Trebr_0581 Trebr_0581 720425 723814 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: tde:TDE1092 hypothetical protein~PFAM: Tetratricopeptide TPR-1~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919459 gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0581 Trebr_0582 Trebr_0582 Trebr_0582 723879 724505 + phosphatidate cytidylyltransferase COGs: COG0170 Dolichol kinase~InterPro IPR000374~KEGG: tde:TDE2717 phosphatidate cytidylyltransferase%2C putative~PFAM: Phosphatidate cytidylyltransferase~SPTR: Phosphatidate cytidylyltransferase%2C putative%3B~IMG reference gene:2504919460~PFAM: Cytidylyltransferase family gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0582 Trebr_0583 Trebr_0583 Trebr_0583 724490 725320 - hypothetical protein KEGG: tde:TDE1445 hypothetical protein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504919461 gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0583 Trebr_0584 Trebr_0584 Trebr_0584 725458 726150 + Protein of unknown function DUF2259%2C secreted COGs: COG5497 secreted protein~InterPro IPR018725~KEGG: tde:TDE1519 hypothetical protein~PFAM: Protein of unknown function DUF2259%2C secreted~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919462~PFAM: Predicted secreted protein (DUF2259) gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0584 Trebr_0585 Trebr_0585 Trebr_0585 726159 726596 - hypothetical protein IMG reference gene:2504919463 gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0585 Trebr_0586 Trebr_0586 Trebr_0586 726697 727785 + hypothetical protein KEGG: sta:STHERM_c01870 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919464 gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0586 Trebr_0587 Trebr_0587 Trebr_0587 727801 728733 + Aldose 1-epimerase COGs: COG2017 Galactose mutarotase~InterPro IPR008183~KEGG: cpf:CPF_0279 putative aldose 1-epimerase~PFAM: Aldose 1-epimerase~SPTR: Putative aldose 1-epimerase%3B~IMG reference gene:2504919465~PFAM: Aldose 1-epimerase gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0587 Trebr_0588 Trebr_0588 Trebr_0588 728842 730725 + tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division~HAMAP: Glucose-inhibited division protein A~InterPro IPR004416:IPR002218~KEGG: sta:STHERM_c02920 glucose-inhibited division protein A~PFAM: Glucose-inhibited division protein A-related~SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG%3B~IMG reference gene:2504919466~PFAM: Glucose inhibited division protein A~TIGRFAM: glucose-inhibited division protein A gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0588 Trebr_0589 Trebr_0589 Trebr_0589 730854 731768 - Adenosine deaminase COGs: COG1816 Adenosine deaminase~InterPro IPR001365~KEGG: tde:TDE0188 adenosine deaminase~PFAM: Adenosine/AMP deaminase~PRIAM: Adenosine deaminase~SPTR: Adenosine deaminase%3B~IMG reference gene:2504919467~PFAM: Adenosine/AMP deaminase gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0589 Trebr_0590 Trebr_0590 Trebr_0590 731857 733659 - oligoendopeptidase F COGs: COG1164 Oligoendopeptidase F~InterPro IPR013647:IPR001567:IPR004438~KEGG: tde:TDE2639 oligoendopeptidase F~PFAM: Peptidase M3A/M3B%2C thimet/oligopeptidase F%3B Peptidase M3B%2C oligopeptidase F%2C N-terminal~SPTR: Oligoendopeptidase F%3B~TIGRFAM: Peptidase M3B%2C oligoendopeptidase F~IMG reference gene:2504919468~PFAM: Oligopeptidase F%3B Peptidase family M3~TIGRFAM: oligoendopeptidase F gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0590 Trebr_0591 Trebr_0591 Trebr_0591 733828 735612 - ATP-dependent DNA helicase%2C RecQ family COGs: COG0514 Superfamily II DNA helicase~InterPro IPR014001:IPR001650:IPR011545:IPR018329~KEGG: tde:TDE0435 ATP-dependent DNA helicase RecQ~PFAM: DNA/RNA helicase%2C C-terminal%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: ATP-dependent DNA helicase%2C RecQ family%3B~TIGRFAM: DNA helicase%2C ATP-dependent%2C RecQ type%2C N-terminal~IMG reference gene:2504919469~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase~TIGRFAM: ATP-dependent DNA helicase%2C RecQ family gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0591 Trebr_0592 Trebr_0592 Trebr_0592 735680 736990 - OmpA/MotB domain protein COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein~InterPro IPR006665~KEGG: tde:TDE0664 OmpA family protein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: OmpA family protein%3B~IMG reference gene:2504919470~PFAM: OmpA family gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0592 Trebr_0593 Trebr_0593 Trebr_0593 737139 737579 + Holliday junction resolvase-like protein COGs: COG4741 secreted endonuclease distantly related to Holliday junction resolvase~InterPro IPR019287~KEGG: tde:TDE2613 hypothetical protein~PFAM: Holliday junction resolvase-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919471~PFAM: Endonuclease related to archaeal Holliday junction resolvase gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0593 Trebr_0594 Trebr_0594 Trebr_0594 737555 739366 - diguanylate cyclase/phosphodiesterase COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain~InterPro IPR000160:IPR001633~KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~SPTR: Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504919472~PFAM: EAL domain%3B GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0594 Trebr_0595 Trebr_0595 Trebr_0595 739406 740443 - extracellular solute-binding protein family 1 COGs: COG0687 Spermidine/putrescine-binding periplasmic protein~InterPro IPR006059~KEGG: tpp:TPASS_0655 spermidine/putrescine ABC transporter%2C periplasmic binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Spermidine/putrescine ABC transporter%2C periplasmic binding protein%3B~IMG reference gene:2504919473~PFAM: Bacterial extracellular solute-binding protein gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0595 Trebr_0596 Trebr_0596 Trebr_0596 740515 741390 - ABC-type transporter%2C integral membrane subunit COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II~InterPro IPR000515~KEGG: tpp:TPASS_0654 spermidine/putrescine ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Spermidine/putrescine ABC transporter%2C permease protein%3B~IMG reference gene:2504919474~PFAM: Binding-protein-dependent transport system inner membrane component gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0596 Trebr_0597 Trebr_0597 Trebr_0597 741390 742343 - ABC-type transporter%2C integral membrane subunit COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I~InterPro IPR000515~KEGG: tpp:TPASS_0653 spermidine/putrescine ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Spermidine/putrescine transport system permease protein PotB%3B~IMG reference gene:2504919475~PFAM: Binding-protein-dependent transport system inner membrane component gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0597 Trebr_0598 Trebr_0598 Trebr_0598 742340 743512 - Polyamine-transporting ATPase COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003593:IPR003439:IPR013611~KEGG: tpp:TPASS_0652 spermidine/putrescine ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~PRIAM: Polyamine-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Spermidine/putrescine import ATP-binding protein PotA%3B~IMG reference gene:2504919476~PFAM: ABC transporter%3B TOBE domain~TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0598 Trebr_0599 Trebr_0599 Trebr_0599 743730 745829 - pseudogene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0599 Trebr_0600 Trebr_0600 Trebr_0600 745946 746278 - branched-chain amino acid transport COGs: COG1687 branched-chain amino acid permease (azaleucine resistance)~InterPro IPR008407~KEGG: mac:MA3438 branched chain amino acid transport protein AzlD~PFAM: Branched-chain amino acid transport~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919478~PFAM: Branched-chain amino acid transport protein (AzlD) gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0600 Trebr_0601 Trebr_0601 Trebr_0601 746269 746973 - AzlC family protein COGs: COG1296 branched-chain amino acid permease (azaleucine resistance)~InterPro IPR011606~KEGG: mma:MM_3262 branched chain amino acid ABC transporter~PFAM: AzlC-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919479~PFAM: AzlC protein~TIGRFAM: 4-azaleucine resistance probable transporter AzlC gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0601 Trebr_0602 Trebr_0602 Trebr_0602 747014 748807 - Oligo-1%2C6-glucosidase COGs: COG0366 Glycosidase~InterPro IPR006589:IPR006047~KEGG: ere:EUBREC_0891 oligo-1%2C6-glucosidase~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region~PRIAM: Oligo-1%2C6-glucosidase~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~SPTR: Glycosidases%3B~IMG reference gene:2504919480~PFAM: Alpha amylase%2C catalytic domain gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0602 Trebr_0603 Trebr_0603 Trebr_0603 748892 749767 - transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060:IPR003313:IPR000005~KEGG: cbt:CLH_3331 putative transcriptional regulator%2C AraC family~PFAM: Helix-turn-helix%2C AraC type%3B AraC protein%2C arabinose-binding/dimerisation~SMART: Helix-turn-helix%2C AraC domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919481~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family%3B AraC-like ligand binding domain gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0603 Trebr_0604 Trebr_0604 Trebr_0604 749861 750811 - MazG family protein COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain~InterPro IPR004518:IPR011551~KEGG: tde:TDE2286 MazG family protein~PFAM: NTP pyrophosphohydrolase MazG%2C putative catalytic core~SPTR: MazG family protein%3B~TIGRFAM: NTP pyrophosphohydrolase MazG%2C bacterial~IMG reference gene:2504919482~PFAM: MazG nucleotide pyrophosphohydrolase domain~TIGRFAM: MazG family protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0604 Trebr_0605 Trebr_0605 Trebr_0605 751001 751786 - Peptidyl-tRNA hydrolase COGs: COG0193 Peptidyl-tRNA hydrolase~HAMAP: Peptidyl-tRNA hydrolase~InterPro IPR001328~KEGG: tde:TDE0643 peptidyl-tRNA hydrolase~PFAM: Peptidyl-tRNA hydrolase~PRIAM: Aminoacyl-tRNA hydrolase~SPTR: Peptidyl-tRNA hydrolase%3B~TIGRFAM: Peptidyl-tRNA hydrolase~IMG reference gene:2504919483~PFAM: Peptidyl-tRNA hydrolase~TIGRFAM: peptidyl-tRNA hydrolase gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0605 Trebr_0606 Trebr_0606 Trebr_0606 751824 752459 + ATP-dependent Clp protease proteolytic subunit COGs: COG0740 Protease subunit of ATP-dependent Clp protease~HAMAP: ATP-dependent Clp protease proteolytic subunit~InterPro IPR001907~KEGG: sta:STHERM_c05540 hypothetical protein~PFAM: Peptidase S14%2C ClpP~PRIAM: Endopeptidase Clp~SPTR: ATP-dependent Clp protease proteolytic subunit 2%3B~IMG reference gene:2504919484~PFAM: Clp protease~TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0606 Trebr_0607 Trebr_0607 Trebr_0607 752597 753505 + GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: ssm:Spirs_3745 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919485~PFAM: Acetyltransferase (GNAT) family%3B Uncharacterised protein family (UPF0158) gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0607 Trebr_0608 Trebr_0608 Trebr_0608 753631 754461 + DbpA RNA-binding domain protein InterPro IPR005580~KEGG: tde:TDE2592 DbpA RNA-binding domain-containing protein~PFAM: DbpA%2C RNA-binding~SPTR: DbpA RNA binding domain protein%3B~IMG reference gene:2504919486~PFAM: DbpA RNA binding domain gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0608 Trebr_0609 Trebr_0609 Trebr_0609 754476 755171 + metallo-beta-lactamase family protein COGs: COG0491 Zn-dependent hydrolase including glyoxylase~KEGG: tde:TDE2403 metallo-beta-lactamase family protein~SPTR: Metallo-beta-lactamase family protein%3B~IMG reference gene:2504919487~PFAM: Metallo-beta-lactamase superfamily gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0609 Trebr_0610 Trebr_0610 Trebr_0610 755244 756911 - Na/Pi-cotransporter II-related protein COGs: COG1283 Na+/phosphate symporter~InterPro IPR003841:IPR008170:IPR004633~KEGG: tde:TDE1964 Na/Pi cotransporter family protein~PFAM: Na/Pi-cotransporter%3B PhoU~SPTR: Na/Pi cotransporter family protein%3B~TIGRFAM: Na/Pi co-transporter II-related~IMG reference gene:2504919488~PFAM: Na+/Pi-cotransporter%3B PhoU domain~TIGRFAM: Na/Pi-cotransporter gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0610 Trebr_0611 Trebr_0611 Trebr_0611 757045 757836 + hypothetical protein IMG reference gene:2504919489 gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0611 Trebr_0612 Trebr_0612 Trebr_0612 757861 758580 + phosphodiesterase%2C MJ0936 family COGs: COG0622 phosphoesterase~InterPro IPR004843:IPR000979~KEGG: tde:TDE1578 phosphoesterase%2C putative~PFAM: Metallophosphoesterase~SPTR: Phosphoesterase%2C putative%3B~TIGRFAM: Uncharacterised protein family UPF0025~IMG reference gene:2504919490~TIGRFAM: phosphoesterase%2C MJ0936 family gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0612 Trebr_0613 Trebr_0613 Trebr_0613 758621 759043 + periplasmic protein KEGG: brm:Bmur_2690 periplasmic protein~SPTR: Periplasmic protein%3B~IMG reference gene:2504919491~PFAM: Protein of unknown function (DUF2874) gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0613 Trebr_0614 Trebr_0614 Trebr_0614 759055 759804 - Sulfate-transporting ATPase COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: mta:Moth_1128 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919492~PFAM: ABC transporter gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0614 Trebr_0615 Trebr_0615 Trebr_0615 759797 760489 - polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR000515:IPR010065~KEGG: aoe:Clos_0184 polar amino acid ABC transporter%2C inner membrane subunit~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Polar amino acid ABC transporter%2C inner membrane subunit%3B~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine~IMG reference gene:2504919493~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0615 Trebr_0616 Trebr_0616 Trebr_0616 760633 763449 + Valyl-tRNA synthetase COGs: COG0525 Valyl-tRNA synthetase~HAMAP: Valyl-tRNA synthetase~InterPro IPR002300:IPR013155:IPR019499:IPR002303~KEGG: tde:TDE1364 valyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ia%3B Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding%3B Valyl-tRNA synthetase%2C class Ia%2C tRNA binding arm~PRIAM: Valine--tRNA ligase~SPTR: Valyl-tRNA synthetase%3B~TIGRFAM: Valyl-tRNA synthetase%2C class Ia~IMG reference gene:2504919494~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain%3B Valyl tRNA synthetase tRNA binding arm~TIGRFAM: valyl-tRNA synthetase gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0616 Trebr_0617 Trebr_0617 Trebr_0617 763476 764054 + hypothetical protein KEGG: tde:TDE1690 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919495 gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0617 Trebr_0618 Trebr_0618 Trebr_0618 764129 765259 - sodium ion-translocating decarboxylase%2C beta subunit COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit~InterPro IPR005661~KEGG: tte:TTE1215 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~PRIAM: Glutaconyl-CoA decarboxylase~SPTR: Sodium ion-translocating decarboxylase%2C beta subunit%3B~TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~IMG reference gene:2504919496~PFAM: subunit~TIGRFAM: sodium ion-translocating decarboxylase%2C beta subunit gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0618 Trebr_0619 Trebr_0619 Trebr_0619 765563 766561 + glyceraldehyde-3-phosphate dehydrogenase%2C type I COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase~InterPro IPR006424:IPR020828:IPR020829~KEGG: pdi:BDI_0287 glyceraldehyde 3-phosphate dehydrogenase~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain~PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)~SPTR: Glyceraldehyde-3-phosphate dehydrogenase%2C type I%3B~TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase%2C type I~IMG reference gene:2504919497~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C C-terminal domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C NAD binding domain~TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0619 Trebr_0620 Trebr_0620 Trebr_0620 766745 768760 + two component regulator propeller domain protein COGs: COG3292 periplasmic ligand-binding sensor domain~InterPro IPR011110~KEGG: tde:TDE1685 GGDEF domain-containing protein~PFAM: Two component regulator propeller~SPTR: GGDEF domain protein%3B~IMG reference gene:2504919498~PFAM: Two component regulator propeller gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0620 Trebr_0621 Trebr_0621 Trebr_0621 768757 769758 + diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160:IPR011123~KEGG: tde:TDE1685 GGDEF domain-containing protein~PFAM: Diguanylate cyclase%2C predicted%3B Two component regulator three Y~SMART: Diguanylate cyclase%2C predicted~SPTR: GGDEF domain protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504919499~PFAM: Y_Y_Y domain%3B GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0621 Trebr_0622 Trebr_0622 Trebr_0622 769873 770286 - hypothetical protein IMG reference gene:2504919500 gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0622 Trebr_0623 Trebr_0623 Trebr_0623 770288 772693 - AAA ATPase central domain protein COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase~InterPro IPR003959:IPR003593~KEGG: ssm:Spirs_1297 AAA ATPase central domain protein~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core~SPTR: Recombination factor protein RarA%3B~IMG reference gene:2504919501~PFAM: MgsA AAA+ ATPase C terminal%3B ATPase family associated with various cellular activities (AAA) gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0623 Trebr_0624 Trebr_0624 Trebr_0624 772715 773641 - hypothetical protein KEGG: tde:TDE0015 putative lipoprotein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504919502 gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0624 Trebr_0625 Trebr_0625 Trebr_0625 773655 774242 - hypothetical protein KEGG: tde:TDE0014 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919503 gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0625 Trebr_0626 Trebr_0626 Trebr_0626 774400 775278 + Bifunctional protein folD COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase~HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase~InterPro IPR000672:IPR020630:IPR020631~KEGG: tde:TDE0013 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain~PRIAM: Methenyltetrahydrofolate cyclohydrolase~SPTR: Bifunctional protein FolD%3B~IMG reference gene:2504919504~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0626 Trebr_0627 Trebr_0627 Trebr_0627 775289 776125 + GTP cyclohydrolase I COGs: COG1469 conserved hypothetical protein~InterPro IPR003801~KEGG: sta:STHERM_c09930 hypothetical protein~PFAM: Protein of unknown function DUF198~PRIAM: GTP cyclohydrolase I~SPTR: GTP cyclohydrolase I%3B~IMG reference gene:2504919505~PFAM: Uncharacterized ACR%2C COG1469 gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0627 Trebr_0628 Trebr_0628 Trebr_0628 776133 777968 + Radical SAM domain protein COGs: COG1032 Fe-S oxidoreductase~InterPro IPR007197:IPR006638~KEGG: ipo:Ilyop_1336 radical SAM domain protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504919506~PFAM: Radical SAM superfamily%3B B12 binding domain gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0628 Trebr_0629 Trebr_0629 Trebr_0629 778096 779508 + (Dimethylallyl)adenosine tRNA methylthiotransferase miaB COGs: COG0621 2-methylthioadenine synthetase~HAMAP: tRNA-i(6)A37 modification enzyme MiaB~InterProIPR006463:IPR005839:IPR013848:IPR007197:IPR 002792:IPR006638~KEGG: tde:TDE1576 (dimethylallyl)adenosine tRNA methylthiotransferase~PFAM: Methylthiotransferase%2C N-terminal%3B Radical SAM%3B Deoxyribonuclease/rho motif-related TRAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: (Dimethylallyl)adenosine tRNA methylthiotransferase miaB%3B~TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB%3B Methylthiotransferase~IMG reference gene:2504919507~PFAM: TRAM domain%3B Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0629 Trebr_0630 Trebr_0630 Trebr_0630 779630 780058 + hypothetical protein KEGG: tde:TDE1615 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504919508 gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0630 Trebr_0631 Trebr_0631 Trebr_0631 780070 781140 + Sporulation domain-containing protein InterPro IPR007730~KEGG: tpp:TPASS_0752 hypothetical protein~PFAM: Sporulation/cell division region%2C bacteria~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919509~PFAM: Sporulation related domain gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0631 Trebr_0632 Trebr_0632 Trebr_0632 781272 782771 - hypothetical protein KEGG: tde:TDE0840 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919510 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0632 Trebr_0633 Trebr_0633 Trebr_0633 782784 783536 - Methyltransferase type 11 InterPro IPR013216~KEGG: tde:TDE2499 hypothetical protein~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919511~PFAM: Methyltransferase domain gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0633 Trebr_0634 Trebr_0634 Trebr_0634 783753 784181 + ribosomal protein L13 COGs: COG0102 Ribosomal protein L13~InterPro IPR005823:IPR005822~KEGG: tde:TDE0852 50S ribosomal protein L13~PFAM: Ribosomal protein L13~SPTR: 50S ribosomal protein L13%3B~TIGRFAM: Ribosomal protein L13%2C bacterial-type~IMG reference gene:2504919512~PFAM: Ribosomal protein L13~TIGRFAM: ribosomal protein L13%2C bacterial type gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0634 Trebr_0635 Trebr_0635 Trebr_0635 784194 784586 + ribosomal protein S9 COGs: COG0103 Ribosomal protein S9~InterPro IPR000754~KEGG: tde:TDE0853 30S ribosomal protein S9~PFAM: Ribosomal protein S9~SPTR: 30S ribosomal protein S9%3B~IMG reference gene:2504919513~PFAM: Ribosomal protein S9/S16 gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0635 Trebr_0636 Trebr_0636 Trebr_0636 784586 785194 + regulatory protein RecX COGs: COG2137 conserved hypothetical protein~InterPro IPR003783~KEGG: tde:TDE0854 recombination regulator RecX~PFAM: Regulatory protein RecX~SPTR: Regulatory protein recX%3B~IMG reference gene:2504919514~PFAM: RecX family gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0636 Trebr_0637 Trebr_0637 Trebr_0637 785370 785975 + response regulator receiver protein COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR000551:IPR001789~KEGG: tde:TDE0855 DNA-binding response regulator~PFAM: Signal transduction response regulator%2C receiver region%3B HTH transcriptional regulator%2C MerR~SMART: Signal transduction response regulator%2C receiver region~SPTR: DNA-binding response regulator%3B~IMG reference gene:2504919515~PFAM: Response regulator receiver domain~TIGRFAM: DNA binding domain%2C excisionase family gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0637 Trebr_0638 Trebr_0638 Trebr_0638 786112 787326 + Stage II sporulation protein E InterPro IPR010822:IPR001932~KEGG: cts:Ctha_0226 protein serine/threonine phosphatase~PFAM: Sporulation stage II%2C protein E C-terminal~SMART: Protein phosphatase 2C-related~SPTR: Protein serine/threonine phosphatase%3B~IMG reference gene:2504919516~PFAM: Stage II sporulation protein E (SpoIIE) gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0638 Trebr_0639 Trebr_0639 Trebr_0639 787373 787930 + putative anti-sigma regulatory factor%2C serine/threonine protein kinase KEGG: ssm:Spirs_1317 putative anti-sigma regulatory factor%2C serine/threonine protein kinase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919517 gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0639 Trebr_0640 Trebr_0640 Trebr_0640 787927 789111 + protein serine/threonine phosphatase COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR000644:IPR010822:IPR001932~KEGG: ssm:Spirs_1299 protein serine/threonine phosphatase~PFAM: Sporulation stage II%2C protein E C-terminal%3B Cystathionine beta-synthase%2C core~SMART: Protein phosphatase 2C-related~SPTR: Protein serine/threonine phosphatase%3B~IMG reference gene:2504919518~PFAM: CBS domain%3B Stage II sporulation protein E (SpoIIE) gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0640 Trebr_0641 Trebr_0641 Trebr_0641 789121 790233 - signal peptide peptidase SppA%2C 36K type COGs: COG0616 Periplasmic serine protease (ClpP class)~InterPro IPR004635:IPR002142~KEGG: cth:Cthe_1421 signal peptide peptidase SppA%2C 36K type~PFAM: Peptidase S49~SPTR: Signal peptide peptidase SppA%2C 36K type%3B~TIGRFAM: Peptidase S49%2C SppA~IMG reference gene:2504919519~PFAM: Peptidase family S49~TIGRFAM: signal peptide peptidase SppA%2C 36K type gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0641 Trebr_0642 Trebr_0642 Trebr_0642 790239 790889 - protein of unknown function DUF975 InterPro IPR010380~KEGG: bmd:BMD_3227 hypothetical protein~PFAM: Protein of unknown function DUF975~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919520~PFAM: Protein of unknown function (DUF975) gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0642 Trebr_0643 Trebr_0643 Trebr_0643 790948 791586 - adenylate cyclase COGs: COG1437 Adenylate cyclase class 2 (thermophilic)~InterPro IPR008172~KEGG: bpo:BP951000_1449 adenylate cyclase~PFAM: Adenylate cyclase~SPTR: Adenylate cyclase%2C class 2 thermophilic%3B~IMG reference gene:2504919521~PFAM: CYTH domain~TIGRFAM: adenylyl cyclase CyaB%2C putative gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0643 Trebr_0644 Trebr_0644 Trebr_0644 791710 793848 + hypothetical protein KEGG: cpi:Cpin_1999 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919522 gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0644 Trebr_0645 Trebr_0645 Trebr_0645 793805 795229 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: amt:Amet_0545 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: MATE efflux family protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504919523~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0645 Trebr_0646 Trebr_0646 Trebr_0646 795363 796235 + transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR003313:IPR000005:IPR018060~KEGG: amt:Amet_0544 helix-turn-helix domain-containing protein~PFAM: Helix-turn-helix%2C AraC type%3B AraC protein%2C arabinose-binding/dimerisation~SMART: Helix-turn-helix%2C AraC domain~SPTR: Helix-turn-helix-domain containing protein%2C AraC type%3B~IMG reference gene:2504919524~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family%3B AraC-like ligand binding domain gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0646 Trebr_0647 Trebr_0647 Trebr_0647 796389 797297 + Dihydrodipicolinate synthase COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase~HAMAP: Dihydrodipicolinate synthase~InterPro IPR005263:IPR002220~KEGG: pcu:pc0686 putative dihydrodipicolinate synthase~PFAM: Dihydrodipicolinate synthetase~PRIAM: Dihydrodipicolinate synthase~SPTR: Dihydrodipicolinate synthase%3B~TIGRFAM: Dihydrodipicolinate synthase subfamily~IMG reference gene:2504919525~PFAM: Dihydrodipicolinate synthetase family~TIGRFAM: dihydrodipicolinate synthase gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0647 Trebr_0648 Trebr_0648 Trebr_0648 797308 798414 + aspartate-semialdehyde dehydrogenase COGs: COG0136 Aspartate-semialdehyde dehydrogenase~InterPro IPR005676:IPR000534:IPR012280~KEGG: cpy:Cphy_0426 aspartate-semialdehyde dehydrogenase~PFAM: Semialdehyde dehydrogenase%2C dimerisation region%3B Semialdehyde dehydrogenase%2C NAD-binding~PRIAM: Aspartate-semialdehyde dehydrogenase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Aspartate-semialdehyde dehydrogenase%2C peptidoglycan lacking~IMG reference gene:2504919526~PFAM: Semialdehyde dehydrogenase%2C dimerisation domain%3B Semialdehyde dehydrogenase%2C NAD binding domain~TIGRFAM: aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0648 Trebr_0649 Trebr_0649 Trebr_0649 798454 799722 + Diaminopimelate decarboxylase COGs: COG0019 Diaminopimelate decarboxylase~InterPro IPR000183~KEGG: cni:Calni_0514 diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2~PRIAM: Diaminopimelate decarboxylase~SPTR: Diaminopimelate decarboxylase%3B~IMG reference gene:2504919527~PFAM: Pyridoxal-dependent decarboxylase%2C C-terminal sheet domain%3B Pyridoxal-dependent decarboxylase%2C pyridoxal binding domain~TIGRFAM: diaminopimelate decarboxylase gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0649 Trebr_0650 Trebr_0650 Trebr_0650 799674 801299 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919528 gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0650 Trebr_0651 Trebr_0651 Trebr_0651 801315 802103 - NAD(+) diphosphatase COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding~InterPro IPR015375:IPR015376:IPR000086~KEGG: bav:BAV2947 NADH pyrophosphatase~PFAM: NUDIX hydrolase domain%3B Zinc ribbon%2C NADH pyrophosphatase%3B NADH pyrophosphatase-like%2C N-terminal~PRIAM: NAD(+) diphosphatase~SPTR: NADH pyrophosphatase%3B~IMG reference gene:2504919529~PFAM: NADH pyrophosphatase zinc ribbon domain%3B NUDIX domain gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0651 Trebr_0652 Trebr_0652 Trebr_0652 802380 802877 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase~InterPro IPR000031~KEGG: cpr:CPR_0670 phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~PRIAM: Phosphoribosylaminoimidazole carboxylase~SPTR: Phosphoribosylaminoimidazole carboxylase catalytic subunit%3B~TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~IMG reference gene:2504919530~PFAM: AIR carboxylase~TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C PurE protein gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0652 Trebr_0653 Trebr_0653 Trebr_0653 802874 803608 + Phosphoribosylaminoimidazole-succinocarboxamide synthase COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase~HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase~InterPro IPR001636~KEGG: ckr:CKR_2384 phosphoribosylaminoimidazole-succinocarboxamide synthase~PFAM: SAICAR synthetase~PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase~SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase%3B~TIGRFAM: SAICAR synthetase~IMG reference gene:2504919531~PFAM: SAICAR synthetase~TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0653 Trebr_0654 Trebr_0654 Trebr_0654 803622 805073 + amidophosphoribosyltransferase COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase~InterPro IPR005854:IPR000583:IPR000836~KEGG: cbb:CLD_1664 amidophosphoribosyltransferase~PFAM: Glutamine amidotransferase%2C class-II%3B Phosphoribosyltransferase~PRIAM: Amidophosphoribosyltransferase~SPTR: Amidophosphoribosyltransferase%3B~TIGRFAM: Amidophosphoribosyl transferase~IMG reference gene:2504919532~PFAM: Phosphoribosyl transferase domain%3B Glutamine amidotransferases class-II~TIGRFAM: amidophosphoribosyltransferase gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0654 Trebr_0655 Trebr_0655 Trebr_0655 805160 806254 + phosphoribosylformylglycinamidine cyclo-ligase COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase~InterPro IPR004733:IPR000728:IPR010918~KEGG: cac:CA_C1393 phosphoribosylaminoimidazole synthetase~PFAM: AIR synthase related protein%3B AIR synthase related protein%2C C-terminal~PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase~SPTR: Phosphoribosylformylglycinamidine cyclo-ligase%3B~TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase~IMG reference gene:2504919533~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: phosphoribosylaminoimidazole synthetase gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0655 Trebr_0656 Trebr_0656 Trebr_0656 806247 807332 + phosphoribosylglycinamide formyltransferase COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN~InterPro IPR004607:IPR002376~KEGG: sta:STHERM_c12550 hypothetical protein~PFAM: Formyl transferase%2C N-terminal~PRIAM: Phosphoribosylglycinamide formyltransferase~SPTR: Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase%3B~TIGRFAM: Phosphoribosylglycinamide formyltransferase~IMG reference gene:2504919534~PFAM: Formyl transferase~TIGRFAM: phosphoribosylglycinamide formyltransferase%2C formyltetrahydrofolate-dependent gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0656 Trebr_0657 Trebr_0657 Trebr_0657 807415 808785 - gluconate transporter COGs: COG2610 H+/gluconate symporter and related permease~InterPro IPR003474~KEGG: cbf:CLI_2253 gluconate permease~PFAM: Gluconate transporter~SPTR: Gluconate transporter%3B~TIGRFAM: Gluconate transporter~IMG reference gene:2504919535~PFAM: GntP family permease~TIGRFAM: gluconate transporter gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0657 Trebr_0658 Trebr_0658 Trebr_0658 808883 809884 - 4-hydroxythreonine-4-phosphate dehydrogenase COGs: COG1995 Pyridoxal phosphate biosynthesis protein~HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA~InterPro IPR005255~KEGG: csh:Closa_3618 4-hydroxythreonine-4-phosphate dehydrogenase~PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA~PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase~SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase%3B~TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA~IMG reference gene:2504919536~PFAM: Pyridoxal phosphate biosynthetic protein PdxA~TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0658 Trebr_0659 Trebr_0659 Trebr_0659 809921 811225 - type III effector Hrp-dependent outer protein COGs: COG3395 conserved hypothetical protein~InterPro IPR010737~KEGG: csh:Closa_3619 type III effector Hrp-dependent outers domain protein~PFAM: Protein of unknown function%2C DUF1537~SPTR: Uncharacterized protein conserved in bacteria%3B~IMG reference gene:2504919537~PFAM: Protein of unknown function%2C DUF1537 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0659 Trebr_0660 Trebr_0660 Trebr_0660 811231 811977 - transcriptional regulator%2C DeoR family COGs: COG1349 Transcriptional regulators of sugar metabolism~InterPro IPR001034:IPR014036~KEGG: csh:Closa_3616 transcriptional regulator%2C DeoR family~PFAM: HTH transcriptional regulator%2C DeoR%3B HTH transcriptional regulator%2C DeoR N-terminal~SMART: HTH transcriptional regulator%2C DeoR N-terminal~SPTR: Transcriptional regulator%2C DeoR family%3B~IMG reference gene:2504919538~PFAM: Bacterial regulatory proteins%2C deoR family%3B DeoR-like helix-turn-helix domain gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0660 Trebr_0661 Trebr_0661 Trebr_0661 812102 813499 - small GTP-binding protein COGs: COG1160 GTPase~InterPro IPR005225:IPR002917~KEGG: elm:ELI_3378 hypothetical protein~PFAM: GTP-binding protein%2C HSR1-related~SPTR: Small GTP-binding protein%3B~TIGRFAM: Small GTP-binding protein~IMG reference gene:2504919539~PFAM: GTPase of unknown function~TIGRFAM: hydrogenase maturation GTPase HydF%3B small GTP-binding protein domain gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0661 Trebr_0662 Trebr_0662 Trebr_0662 813501 814928 - biotin and thiamin synthesis associated COGs: COG1060 Thiamine biosynthesis protein ThiH~InterPro IPR007197:IPR010722~KEGG: elm:ELI_3377 thiamine biosynthesis protein ThiH~PFAM: Biotin/thiamin synthesis-associated protein%3B Radical SAM~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919540~PFAM: Radical SAM superfamily%3B Biotin and Thiamin Synthesis associated domain~TIGRFAM: iron-only hydrogenase maturation rSAM protein HydG%3B thiazole biosynthesis protein ThiH gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0662 Trebr_0663 Trebr_0663 Trebr_0663 814921 815997 - Radical SAM domain protein COGs: COG0502 Biotin synthase~InterPro IPR007197:IPR006638~KEGG: bth:BT_1835 biotin synthase~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Iron-only hydrogenase maturation protein HydE%3B~IMG reference gene:2504919541~PFAM: Radical SAM superfamily~TIGRFAM: iron-only hydrogenase maturation rSAM protein HydE gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0663 Trebr_0664 Trebr_0664 Trebr_0664 815998 816249 - hypothetical protein KEGG: ere:EUBREC_0233 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919542~TIGRFAM: putative iron-only hydrogenase system regulator gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0664 Trebr_0665 Trebr_0665 Trebr_0665 816610 816999 + transcriptional regulator%2C GntR family COGs: COG1725 transcriptional regulator protein~InterPro IPR000524~KEGG: dth:DICTH_0467 transcriptional regulator%2C GntR family~PFAM: HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR~SPTR: Transcriptional regulator%2C GntR family%3B~IMG reference gene:2504919543~PFAM: Bacterial regulatory proteins%2C gntR family gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0665 Trebr_0666 Trebr_0666 Trebr_0666 816996 817703 + ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: cbf:CLI_0638 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504919544~PFAM: ABC transporter gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0666 Trebr_0667 Trebr_0667 Trebr_0667 817786 818565 + hypothetical protein KEGG: tde:TDE0166 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919545 gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0667 Trebr_0668 Trebr_0668 Trebr_0668 818687 819931 + Histidinol-phosphate aminotransferase COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase~HAMAP: Histidinol-phosphate aminotransferase~InterPro IPR005861:IPR004839~KEGG: histidinol-phosphate aminotransferase~PFAM: Aminotransferase%2C class I/II~PRIAM: Histidinol-phosphate transaminase~SPTR: Histidinol-phosphate aminotransferase%3B~TIGRFAM: Histidinol-phosphate aminotransferase~IMG reference gene:2504919546~PFAM: Aminotransferase class I and II~TIGRFAM: histidinol-phosphate aminotransferase gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0668 Trebr_0669 Trebr_0669 Trebr_0669 819928 820626 + metallophosphoesterase COGs: COG2129 phosphoesterase related to the Icc protein~InterPro IPR004843~KEGG: tde:TDE2514 serine/threonine protein phosphatase family protein~PFAM: Metallophosphoesterase~SPTR: Serine/threonine protein phosphatase family protein%3B~IMG reference gene:2504919547~PFAM: Calcineurin-like phosphoesterase gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0669 Trebr_0670 Trebr_0670 Trebr_0670 820757 822061 + Phenylacetate--CoA ligase COGs: COG1541 Coenzyme F390 synthetase~InterPro IPR000873~KEGG: ddf:DEFDS_0964 phenylacetate-CoA ligase~PFAM: AMP-dependent synthetase/ligase~PRIAM: Phenylacetate--CoA ligase~SPTR: Phenylacetate-CoA ligase%3B~IMG reference gene:2504919548~PFAM: AMP-binding enzyme gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0670 Trebr_0671 Trebr_0671 Trebr_0671 822285 822701 + amino acid-binding ACT domain protein COGs: COG4747 ACT domain-containing protein~InterPro IPR002912~KEGG: drt:Dret_1138 amino acid-binding ACT domain protein~PFAM: Amino acid-binding ACT~SPTR: Amino acid-binding ACT domain protein%3B~IMG reference gene:2504919549~PFAM: ACT domain gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0671 Trebr_0672 Trebr_0672 Trebr_0672 822689 823699 - Sulphatase-modifying factor protein COGs: COG1262 conserved hypothetical protein~InterPro IPR005532~KEGG: tde:TDE2101 hypothetical protein~PFAM: Sulphatase-modifying factor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919550~PFAM: Formylglycine-generating sulfatase enzyme gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0672 Trebr_0673 Trebr_0673 Trebr_0673 823710 824753 - Mg2 transporter protein CorA family protein COGs: COG0598 Mg2+ and Co2+ transporter~InterPro IPR002523~KEGG: elm:ELI_0977 Mg2+ and Co2+ transporter~PFAM: Mg2+ transporter protein%2C CorA-like~SPTR: Mg2+ and Co2+ transporter%3B~IMG reference gene:2504919551~PFAM: CorA-like Mg2+ transporter protein gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0673 Trebr_0674 Trebr_0674 Trebr_0674 825160 826260 + glutamine amidotransferase class-II COGs: COG0067 Glutamate synthase domain 1~InterPro IPR000583~KEGG: cth:Cthe_0197 glutamate synthase (NADPH) GltB1 subunit~PFAM: Glutamine amidotransferase%2C class-II~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919552~PFAM: Glutamine amidotransferases class-II gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0674 Trebr_0675 Trebr_0675 Trebr_0675 826251 827756 + Glutamate synthase (NADPH) COGs: COG0069 Glutamate synthase domain 2~InterPro IPR001450:IPR002932~KEGG: cth:Cthe_0198 glutamate synthase (NADPH) GltB2 subunit~PFAM: Glutamate synthase%2C central-C%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~PRIAM: Glutamate synthase (NADPH)~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919553~PFAM: Conserved region in glutamate synthase gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0675 Trebr_0676 Trebr_0676 Trebr_0676 827771 828283 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG1142 Fe-S-cluster-containing hydrogenase components 2~InterPro IPR001450~KEGG: cth:Cthe_0199 4Fe-4S ferredoxin%2C iron-sulfur binding~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919554 gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0676 Trebr_0677 Trebr_0677 Trebr_0677 828280 829548 + Ferredoxin--NAD(+) reductase COGs: COG1251 NAD(P)H-nitrite reductase~InterPro IPR013027~KEGG: cth:Cthe_0200 FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PRIAM: Ferredoxin--NAD(+) reductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919555~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0677 Trebr_0678 Trebr_0678 Trebr_0678 829551 830315 + glutamate synthase alpha subunit domain protein COGs: COG0070 Glutamate synthase domain 3~InterPro IPR002489~KEGG: cth:Cthe_0201 glutamate synthase (NADPH) GltB3 subunit~PFAM: Glutamate synthase%2C alpha subunit%2C C-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919556~PFAM: GXGXG motif gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0678 Trebr_0679 Trebr_0679 Trebr_0679 830356 832194 - Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains~HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]~InterPro IPR005855:IPR000583:IPR001347~KEGG: amt:Amet_4299 glucosamine--fructose-6-phosphate aminotransferase%2C isomerizing~PFAM: Sugar isomerase (SIS)%3B Glutamine amidotransferase%2C class-II~PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing)~SPTR: Glucosamine--fructose-6-phosphate aminotransferase%2C isomerizing%3B~TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase%2C isomerising~IMG reference gene:2504919557~PFAM: SIS domain%3B Glutamine amidotransferases class-II~TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0679 Trebr_0680 Trebr_0680 Trebr_0680 832266 836165 - UvrD/REP helicase COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)~InterPro IPR000212~KEGG: tde:TDE0085 ATP-dependent DNA helicase UvrD~PFAM: DNA helicase%2C UvrD/REP type~SPTR: ATP-dependent DNA helicase%2C UvrD/Rep family%3B~IMG reference gene:2504919558~PFAM: UvrD/REP helicase gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0680 Trebr_0681 Trebr_0681 Trebr_0681 836162 839212 - hypothetical protein KEGG: tde:TDE0086 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919559 gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0681 Trebr_0682 Trebr_0682 Trebr_0682 839622 841685 + hypothetical protein KEGG: sta:STHERM_c15960 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919560 gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0682 Trebr_0683 Trebr_0683 Trebr_0683 841701 842144 + hypothetical protein IMG reference gene:2504919561 gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0683 Trebr_0684 Trebr_0684 Trebr_0684 842253 843989 + alpha amylase catalytic region COGs: COG0366 Glycosidase~InterPro IPR006047:IPR006589~KEGG: acp:A2cp1_4280 alpha amylase catalytic region~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~SPTR: Alpha amylase catalytic region%3B~IMG reference gene:2504919562~PFAM: Alpha amylase%2C catalytic domain gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0684 Trebr_0685 Trebr_0685 Trebr_0685 844021 846846 + alpha amylase catalytic region COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase~InterPro IPR004193:IPR006047:IPR006589~KEGG: gym:GYMC10_0346 pullulanase%2C extracellular~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region%3B Glycoside hydrolase%2C family 13%2C N-terminal~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~SPTR: Pullulanase%3B~IMG reference gene:2504919563~PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain)%3B Alpha amylase%2C catalytic domain%3B Bacterial pullanase-associated domain~TIGRFAM: pullulanase%2C extracellular%2C Gram-positive%3B pullulanase%2C type I gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0685 Trebr_0686 Trebr_0686 Trebr_0686 846918 848108 + extracellular solute-binding protein family 1 COGs: COG2182 Maltose-binding periplasmic protein/domains~InterPro IPR006059~KEGG: family 1 extracellular solute-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein%2C family 1%3B~IMG reference gene:2504919564~PFAM: Bacterial extracellular solute-binding protein gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0686 Trebr_0687 Trebr_0687 Trebr_0687 848228 849610 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: xce:Xcel_2153 fructose-bisphosphate aldolase~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport system inner membrane component%3B~IMG reference gene:2504919565~PFAM: Binding-protein-dependent transport system inner membrane component gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0687 Trebr_0688 Trebr_0688 Trebr_0688 849607 850524 + ABC-type transporter%2C integral membrane subunit COGs: COG3833 ABC-type maltose transport systems permease component~InterPro IPR000515~KEGG: tmt:Tmath_1953 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport system inner membrane component%3B~IMG reference gene:2504919566~PFAM: Binding-protein-dependent transport system inner membrane component gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0688 Trebr_0689 Trebr_0689 Trebr_0689 850530 852191 + alpha amylase catalytic region COGs: COG0366 Glycosidase~InterPro IPR006047:IPR006589~KEGG: ppy:PPE_02348 alpha-amylase precursor (1%2C4-alpha-D-glucan glucanohydrolase)~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~SPTR: Alpha amylase catalytic region%3B~IMG reference gene:2504919567~PFAM: Alpha amylase%2C catalytic domain gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0689 Trebr_0690 Trebr_0690 Trebr_0690 852338 853609 + glutamine synthetase catalytic region COGs: COG0174 Glutamine synthetase~InterPro IPR008147:IPR008146~KEGG: cth:Cthe_0202 L-glutamine synthetase~PFAM: Glutamine synthetase%2C catalytic region%3B Glutamine synthetase%2C beta-Grasp~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919568~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase%2C beta-Grasp domain~TIGRFAM: glutamine synthetase%2C type I gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0690 Trebr_0691 Trebr_0691 Trebr_0691 853618 854187 + ANTAR domain protein InterPro IPR005561~KEGG: cth:Cthe_0203 response regulator receiver/ANTAR domain-containing protein~PFAM: ANTAR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919569~PFAM: Response regulator receiver domain%3B ANTAR domain gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0691 Trebr_0692 Trebr_0692 Trebr_0692 854347 855087 + ATPase BadF/BadG/BcrA/BcrD type COGs: COG2971 N-acetylglucosamine kinase~InterPro IPR002731~KEGG: csh:Closa_3603 ATPase BadF/BadG/BcrA/BcrD type~PFAM: ATPase%2C BadF/BadG/BcrA/BcrD type~SPTR: ATPase BadF/BadG/BcrA/BcrD type%3B~IMG reference gene:2504919570~PFAM: BadF/BadG/BcrA/BcrD ATPase family gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0692 Trebr_0693 Trebr_0693 Trebr_0693 855317 857047 + asparagine synthase (glutamine-hydrolyzing) COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing)~InterPro IPR006426:IPR000583:IPR001962~KEGG: fjo:Fjoh_2251 asparagine synthetase B~PFAM: Asparagine synthase%3B Glutamine amidotransferase%2C class-II~PRIAM: Asparagine synthase (glutamine-hydrolyzing)~SPTR: Asparagine synthetase B (Glutamine-hydrolyzing)%3B~TIGRFAM: Asparagine synthase%2C glutamine-hydrolyzing~IMG reference gene:2504919571~PFAM: Asparagine synthase~TIGRFAM: asparagine synthase (glutamine-hydrolyzing) gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0693 Trebr_0694 Trebr_0694 Trebr_0694 857330 858280 + 3-oxoacyl-(acyl-carrier-protein) synthase 3 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein)~HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH)~InterPro IPR004655:IPR013751:IPR013747~KEGG: tde:TDE0602 3-oxoacyl-(acyl-carrier-protein) synthase III~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal%3B 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III~PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I~SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3%3B~TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH)~IMG reference gene:2504919572~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal%3B 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0694 Trebr_0695 Trebr_0695 Trebr_0695 858274 859239 + (Acyl-carrier-protein) S-malonyltransferase COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase~InterPro IPR014043~KEGG: tde:TDE0601 malonyl CoA-acyl carrier protein transacylase%2C putative~PFAM: Acyl transferase~PRIAM: [Acyl-carrier-protein] S-malonyltransferase~SPTR: Malonyl CoA-acyl carrier protein transacylase%2C putative%3B~IMG reference gene:2504919573~PFAM: Acyl transferase domain~TIGRFAM: malonyl CoA-acyl carrier protein transacylase gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0695 Trebr_0696 Trebr_0696 Trebr_0696 859299 860042 + 3-oxoacyl-(acyl-carrier-protein) reductase COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)~InterPro IPR011284:IPR002198~KEGG: tde:TDE0598 3-oxoacyl-(acyl-carrier-protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR~PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase~SPTR: 3-oxoacyl-(Acyl-carrier-protein) reductase%3B~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase~IMG reference gene:2504919574~PFAM: short chain dehydrogenase~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0696 Trebr_0697 Trebr_0697 Trebr_0697 860120 861364 + 3-oxoacyl-(acyl-carrier-protein) synthase 2 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase~InterPro IPR017568:IPR014030:IPR014031~KEGG: tde:TDE0038 3-oxoacyl-(acyl-carrier-protein) synthase II~PFAM: Beta-ketoacyl synthase%2C N-terminal%3B Beta-ketoacyl synthase%2C C-terminal~PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II~SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 2%3B~TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2~IMG reference gene:2504919575~PFAM: Beta-ketoacyl synthase%2C N-terminal domain%3B Beta-ketoacyl synthase%2C C-terminal domain~TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0697 Trebr_0698 Trebr_0698 Trebr_0698 861382 861813 + Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase~InterPro IPR013114~KEGG: tde:TDE0823 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase%2C putative~PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase%2C FabA/FabZ~SPTR: (3R)-hydroxymyristoyl-(Acyl-carrier-protein) dehydratase%2C putative%3B~IMG reference gene:2504919576~PFAM: FabA-like domain gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0698 Trebr_0699 Trebr_0699 Trebr_0699 862414 863346 + hypothetical protein KEGG: cbt:CLH_2455 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919577~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0699 Trebr_0700 Trebr_0700 Trebr_0700 863579 863890 + hypothetical protein IMG reference gene:2504919578 gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0700 Trebr_0701 Trebr_0701 Trebr_0701 863956 865290 + hypothetical protein KEGG: pct:PC1_4188 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919579~PFAM: Protein of unknown function (DUF1266) gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0701 Trebr_0702 Trebr_0702 Trebr_0702 865294 867303 + hypothetical protein KEGG: tde:TDE1728 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919580 gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0702 Trebr_0703 Trebr_0703 Trebr_0703 867385 868200 + phosphate ABC transporter%2C ATPase subunit COGs: COG1117 ABC-type phosphate transport system ATPase component~InterPro IPR005670:IPR003439:IPR003593~KEGG: ckr:CKR_1247 hypothetical protein~PFAM: ABC transporter-like~PRIAM: Phosphate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Phosphate ABC transporter%3B~TIGRFAM: Phosphate transport system permease protein 1~IMG reference gene:2504919581~PFAM: ABC transporter~TIGRFAM: phosphate ABC transporter%2C ATP-binding protein gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0703 Trebr_0704 Trebr_0704 Trebr_0704 868289 868960 + phosphate uptake regulator%2C PhoU COGs: COG0704 Phosphate uptake regulator~InterPro IPR008170~KEGG: sta:STHERM_c05380 transcriptional regulatory protein~PFAM: PhoU~SPTR: Phosphate transport system regulatory protein PhoU%3B~TIGRFAM: PhoU~IMG reference gene:2504919582~PFAM: PhoU domain~TIGRFAM: phosphate transport system regulatory protein PhoU gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0704 Trebr_0705 Trebr_0705 Trebr_0705 869151 879872 + hemagluttinin repeat-containing protein InterPro IPR008619~KEGG: sta:STHERM_c00960 hypothetical protein~PFAM: Filamentous haemagglutinin%2C bacterial~SPTR: Hemagluttinin repeat-containing protein%3B~IMG reference gene:2504919583 gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0705 Trebr_0706 Trebr_0706 Trebr_0706 879937 880731 - Phosphonate-transporting ATPase COGs: COG1101 ABC-type uncharacterized transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: bhy:BHWA1_00398 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%3B~IMG reference gene:2504919584~PFAM: ABC transporter gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0706 Trebr_0707 Trebr_0707 Trebr_0707 880725 881633 - ABC-type transporter%2C integral membrane subunit COGs: COG4120 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: brm:Bmur_2585 inner-membrane translocator~PFAM: Bacterial inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2504919585~PFAM: Branched-chain amino acid transport system / permease component gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0707 Trebr_0708 Trebr_0708 Trebr_0708 881803 882696 + formyltetrahydrofolate deformylase COGs: COG0788 Formyltetrahydrofolate hydrolase~InterPro IPR004810:IPR002912:IPR002376~KEGG: fsu:Fisuc_0464 formyltetrahydrofolate deformylase~PFAM: Formyl transferase%2C N-terminal%3B Amino acid-binding ACT~PRIAM: Formyltetrahydrofolate deformylase~SPTR: Formyltetrahydrofolate deformylase%3B~TIGRFAM: Formyltetrahydrofolate deformylase~IMG reference gene:2504919586~PFAM: ACT domain%3B Formyl transferase~TIGRFAM: formyltetrahydrofolate deformylase gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0708 Trebr_0709 Trebr_0709 Trebr_0709 882794 883780 - ABC transporter substrate binding protein COGs: COG2984 ABC-type uncharacterized transport system periplasmic component~InterPro IPR007487~KEGG: brm:Bmur_2584 protein of unknown function DUF534~PFAM: ABC transporter substrate binding protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919587~PFAM: ABC transporter substrate binding protein gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0709 Trebr_0710 Trebr_0710 Trebr_0710 884064 885347 + metallo-beta-lactamase family protein COGs: COG0426 flavoprotein~KEGG: tde:TDE1078 metallo-beta-lactamase family protein~SPTR: Metallo-beta-lactamase family protein%3B~IMG reference gene:2504919588~PFAM: Metallo-beta-lactamase superfamily gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0710 Trebr_0711 Trebr_0711 Trebr_0711 885426 885992 + hypothetical protein IMG reference gene:2504919589 gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0711 Trebr_0712 Trebr_0712 Trebr_0712 886007 887494 + integral membrane sensor signal transduction histidine kinase COGs: COG2972 signal transduction protein with a C-terminal ATPase domain~InterPro IPR003660:IPR010559:IPR003594~KEGG: has:Halsa_0891 signal transduction histidine kinase%2C LytS~PFAM: Signal transduction histidine kinase%2C internal region%3B HAMP linker domain%3B ATP-binding region%2C ATPase-like~SMART: HAMP linker domain~SPTR: Signal transduction histidine kinase%2C LytS%3B~IMG reference gene:2504919590~PFAM: Histidine kinase%3B HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0712 Trebr_0713 Trebr_0713 Trebr_0713 887487 889019 + two component transcriptional regulator%2C AraC family COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789:IPR000005:IPR018060~KEGG: csh:Closa_3814 two component transcriptional regulator%2C AraC family~PFAM: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain%3B Signal transduction response regulator%2C receiver region~SPTR: Two component transcriptional regulator%2C AraC family%3B~IMG reference gene:2504919591~PFAM: Response regulator receiver domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0713 Trebr_0714 Trebr_0714 Trebr_0714 889227 890222 + TRAP dicarboxylate transporter%2C DctP subunit COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component~InterPro IPR004682:IPR018389~KEGG: has:Halsa_0893 TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~SPTR: Putative uncharacterized protein%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~IMG reference gene:2504919592~PFAM: Bacterial extracellular solute-binding protein%2C family 7~TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor%2C DctP family gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0714 Trebr_0715 Trebr_0715 Trebr_0715 890250 890852 + Tripartite ATP-independent periplasmic transporter DctQ component COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component~InterPro IPR007387~KEGG: has:Halsa_0894 tripartite ATP-independent periplasmic transporter DctQ component~PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919593~PFAM: Tripartite ATP-independent periplasmic transporters%2C DctQ component gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0715 Trebr_0716 Trebr_0716 Trebr_0716 890845 892146 + TRAP dicarboxylate transporter%2C DctM subunit COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component~InterPro IPR004681:IPR010656~KEGG: sta:STHERM_c13530 transporter~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: Putative uncharacterized protein%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~IMG reference gene:2504919594~PFAM: DctM-like transporters~TIGRFAM: TRAP transporter%2C DctM subunit gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0716 Trebr_0717 Trebr_0717 Trebr_0717 892136 893143 + TRAP dicarboxylate transporter%2C DctP subunit COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component~InterPro IPR004682:IPR018389~KEGG: sta:STHERM_c13510 transporter~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~SPTR: TRAP dicarboxylate transporter%2C DctP subunit%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~IMG reference gene:2504919595~PFAM: Bacterial extracellular solute-binding protein%2C family 7~TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor%2C DctP family gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0717 Trebr_0718 Trebr_0718 Trebr_0718 893215 894747 - 2%2C3 cyclic-nucleotide 2-phosphodiesterase COGs: COG1418 HD superfamily hydrolase~HAMAP: 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase~InterProIPR017705:IPR006675:IPR018111:IPR006674:IPR 004087:IPR003607~KEGG: tde:TDE0237 hypothetical protein~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain%3B K Homology%2C type 1%2C subgroup~SMART: Metal-dependent phosphohydrolase%2C HD region%3B K Homology~SPTR: 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase%3B~TIGRFAM: 2%2C3-cyclic-nucleotide 2-phosphodiesterase%3B HDIG~IMG reference gene:2504919596~PFAM: KH domain%3B HD domain%3B Domain of unknown function (DUF3552)~TIGRFAM: conserved hypothetical protein YmdA/YtgF%3B uncharacterized domain HDIG gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0718 Trebr_0719 Trebr_0719 Trebr_0719 894972 895790 + MCP methyltransferase%2C CheR-type COGs: COG1352 Methylase of chemotaxis methyl-accepting protein~InterPro IPR000780~KEGG: tde:TDE0647 chemotaxis protein methyltransferase~PFAM: MCP methyltransferase%2C CheR-type~PRIAM: Protein-glutamate O-methyltransferase~SMART: MCP methyltransferase%2C CheR-type~SPTR: CheR methyltransferase%2C SAM binding domain%3B~IMG reference gene:2504919597~PFAM: CheR methyltransferase%2C SAM binding domain%3B CheR methyltransferase%2C all-alpha domain gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0719 Trebr_0720 Trebr_0720 Trebr_0720 895803 896996 + response regulator receiver modulated CheB methylesterase COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain~HAMAP: Chemotaxis response regulator protein-glutamate methylesterase~InterPro IPR001789:IPR000673~KEGG: tde:TDE0648 protein-glutamate methylesterase~PFAM: Signal transduction response regulator%2C chemotaxis%2C protein-glutamate methylesterase%3B Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region~SPTR: Chemotaxis response regulator protein-glutamate methylesterase%3B~IMG reference gene:2504919598~PFAM: CheB methylesterase%3B Response regulator receiver domain gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0720 Trebr_0721 Trebr_0721 Trebr_0721 896968 897423 - hypothetical protein IMG reference gene:2504919599~PFAM: Positive regulator of sigma(E)%2C RseC/MucC gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0721 Trebr_0722 Trebr_0722 Trebr_0722 897416 897952 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR001440:IPR013105:IPR019734~KEGG: tde:TDE1536 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2~SMART: Tetratricopeptide repeat~SPTR: TPR domain protein%3B~IMG reference gene:2504919600~PFAM: Tetratricopeptide repeat gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0722 Trebr_0723 Trebr_0723 Trebr_0723 898046 899092 - Polyprenyl synthetase COGs: COG0142 Geranylgeranyl pyrophosphate synthase~InterPro IPR000092~KEGG: tde:TDE1537 polyprenyl synthetase family protein~PFAM: Polyprenyl synthetase~SPTR: Polyprenyl synthetase family protein%3B~IMG reference gene:2504919601~PFAM: Polyprenyl synthetase gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0723 Trebr_0724 Trebr_0724 Trebr_0724 899164 899760 + Ribosomal RNA large subunit methyltransferase E COGs: COG0293 23S rRNA methylase~HAMAP: Ribosomal RNA large subunit methyltransferase E~InterPro IPR002877~KEGG: tde:TDE1968 cell division protein FtsJ~PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ~SPTR: Ribosomal RNA large subunit methyltransferase E%3B~IMG reference gene:2504919602~PFAM: FtsJ-like methyltransferase~TIGRFAM: cell division protein FtsJ gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0724 Trebr_0725 Trebr_0725 Trebr_0725 899770 900735 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR018392:IPR016047:IPR002482~KEGG: tde:TDE2318 LysM/M23/M37 peptidase~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: LysM domain/M23/M37 peptidase domain protein%3B~IMG reference gene:2504919603~PFAM: Peptidase family M23%3B LysM domain gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0725 Trebr_0726 Trebr_0726 Trebr_0726 900807 901394 - helix-turn-helix domain protein InterPro IPR001387:IPR013096~KEGG: ipo:Ilyop_0217 transcriptional regulator%2C MerR family~PFAM: Helix-turn-helix type 3%3B Cupin 2%2C conserved barrel~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%3B~IMG reference gene:2504919604~PFAM: Cupin domain%3B Helix-turn-helix gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0726 Trebr_0727 Trebr_0727 Trebr_0727 901375 902463 - hypothetical protein KEGG: tde:TDE1725 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919605 gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0727 Trebr_0728 Trebr_0728 Trebr_0728 902737 904548 + acetolactate synthase%2C large subunit%2C biosynthetic type COGs: COG0028 Thiamine pyrophosphate-requiring protein~InterPro IPR012846:IPR012001:IPR012000:IPR011766~KEGG: acetolactate synthase large subunit~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP binding region%3B Thiamine pyrophosphate enzyme%2C central region%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~PRIAM: Acetolactate synthase~SPTR: Acetolactate synthase%2C large subunit%2C biosynthetic type%3B~TIGRFAM: Acetolactate synthase%2C large subunit%2C biosynthetic~IMG reference gene:2504919606~PFAM: Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0728 Trebr_0729 Trebr_0729 Trebr_0729 904701 905333 - Adenylate kinase COGs: COG0563 Adenylate kinase and related kinase~HAMAP: Adenylate kinase~InterPro IPR006259:IPR000850:IPR007862~KEGG: tde:TDE1112 adenylate kinase~PFAM: Adenylate kinase%3B Adenylate kinase%2C zinc-finger lid region~SPTR: Adenylate kinase%3B~TIGRFAM: Adenylate kinase%2C subfamily~IMG reference gene:2504919607~PFAM: Adenylate kinase%2C active site lid%3B Adenylate kinase~TIGRFAM: adenylate kinases gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0729 Trebr_0730 Trebr_0730 Trebr_0730 905448 905861 - helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE1170 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504919608~PFAM: Bacteriophage CI repressor helix-turn-helix domain gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0730 Trebr_0731 Trebr_0731 Trebr_0731 906160 906327 + pseudogene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0731 Trebr_0732 Trebr_0732 Trebr_0732 906523 906732 + pseudogene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0732 Trebr_0733 Trebr_0733 Trebr_0733 906808 908250 + polysaccharide biosynthesis protein COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid~InterPro IPR002797~KEGG: cth:Cthe_2335 polysaccharide biosynthesis protein~PFAM: Polysaccharide biosynthesis protein~SPTR: Polysaccharide biosynthesis protein%3B~IMG reference gene:2504919611~PFAM: Polysaccharide biosynthesis protein gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0733 Trebr_0734 Trebr_0734 Trebr_0734 908247 909348 + pseudogene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0734 Trebr_0735 Trebr_0735 Trebr_0735 909351 910463 + DegT/DnrJ/EryC1/StrS aminotransferase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653~KEGG: bfr:BF2581 aminotransferase~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919613~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0735 Trebr_0736 Trebr_0736 Trebr_0736 910463 911668 + ATP-grasp fold domain protein%2C DUF201-type COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)~InterPro IPR003806~KEGG: putative carbamoyl-phosphate-synthetase~PFAM: ATP-grasp fold%2C DUF201-type~SPTR: Putative carbamoyl-phosphate-synthetase%3B~IMG reference gene:2504919614~PFAM: ATP-grasp domain gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0736 Trebr_0737 Trebr_0737 Trebr_0737 911705 912208 + GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: son:SO_3182 acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Putative acetyltransferase%3B~IMG reference gene:2504919615~PFAM: Acetyltransferase (GNAT) family gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0737 Trebr_0738 Trebr_0738 Trebr_0738 912258 913205 + hypothetical protein KEGG: hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919616 gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0738 Trebr_0739 Trebr_0739 Trebr_0739 913193 913717 + GCN5-related N-acetyltransferase COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein~InterPro IPR000182~KEGG: dps:DP0040 acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Pseudaminic acid biosynthesis N-acetyl transferase%3B~IMG reference gene:2504919617~PFAM: Acetyltransferase (GNAT) family~TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0739 Trebr_0740 Trebr_0740 Trebr_0740 913788 914774 + Beta-ketoacyl-acyl-carrier-protein synthase III COGs: COG0332 3-oxoacyl-(acyl-carrier-protein)~InterPro IPR001173:IPR013747~KEGG: fsu:Fisuc_2659 glycosyl transferase family 2~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal%3B Glycosyl transferase%2C family 2~PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III~SPTR: Glycosyl transferase%2C group 2 family protein%3B~IMG reference gene:2504919618~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal%3B Glycosyl transferase family 2 gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0740 Trebr_0741 Trebr_0741 Trebr_0741 914779 915777 + hypothetical protein KEGG: lbf:LBF_1962 glycosyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919619 gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0741 Trebr_0742 Trebr_0742 Trebr_0742 915764 916642 + hypothetical protein KEGG: lby:Lbys_1300 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919620~PFAM: Cryptococcal mannosyltransferase 1 gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0742 Trebr_0743 Trebr_0743 Trebr_0743 916646 917306 + pseudogene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0743 Trebr_0744 Trebr_0744 Trebr_0744 917514 918677 + hypothetical protein KEGG: pdi:BDI_0302 putative lipopolysaccharide biosynthesis related polysaccharide polymerase~SPTR: Predicted protein%3B~IMG reference gene:2504919622 gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0744 Trebr_0745 Trebr_0745 Trebr_0745 918674 919435 + glycosyltransferase sugar-binding region containing DXD motif COGs: COG3774 Mannosyltransferase OCH1~InterPro IPR007577~KEGG: pdi:BDI_1286 glycosyl transferase family protein~PFAM: Glycosyltransferase sugar-binding region containing DXD motif~SPTR: Glycosyltransferase family 32%3B~IMG reference gene:2504919623~PFAM: Glycosyltransferase sugar-binding region containing DXD motif gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0745 Trebr_0746 Trebr_0746 Trebr_0746 919432 920187 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase%2C group 2 family%3B~IMG reference gene:2504919624~PFAM: Glycosyl transferase family 2 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0746 Trebr_0747 Trebr_0747 Trebr_0747 920257 921451 + pseudogene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0747 Trebr_0748 Trebr_0748 Trebr_0748 921522 922421 - tetracycline resistance leader peptide KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919626~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0748 Trebr_0749 Trebr_0749 Trebr_0749 922826 923413 + hypothetical protein IMG reference gene:2504919627 gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0749 Trebr_0750 Trebr_0750 Trebr_0750 923483 923881 + queuosine biosynthesis protein QueD COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase~InterPro IPR007115~KEGG: sta:STHERM_c17560 putative 6-pyruvoyl tetrahydropterin synthase~PFAM: 6-pyruvoyl tetrahydropterin synthase-related~SPTR: Putative 6-pyruvoyl tetrahydropterin synthase%3B~TIGRFAM: queuosine biosynthesis protein QueD~IMG reference gene:2504919628~PFAM: 6-pyruvoyl tetrahydropterin synthase~TIGRFAM: queuosine biosynthesis protein QueD%3B 6-pyruvoyl tetrahydropterin synthase/QueD family protein gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0750 Trebr_0751 Trebr_0751 Trebr_0751 923959 924720 - Imidazole glycerol phosphate synthase subunit hisF COGs: COG0107 Imidazoleglycerol-phosphate synthase~HAMAP: Imidazole glycerol phosphate synthase subunit hisF~InterPro IPR004651:IPR006062~KEGG: sta:STHERM_c15890 imidazoleglycerol phosphate synthase%2C cyclase subunit~PFAM: Histidine biosynthesis~SPTR: Imidazole glycerol phosphate synthase subunit hisF%3B~TIGRFAM: Histidine biosynthesis%2C HisF~IMG reference gene:2504919629~PFAM: Histidine biosynthesis protein~TIGRFAM: imidazoleglycerol phosphate synthase%2C cyclase subunit gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0751 Trebr_0752 Trebr_0752 Trebr_0752 924720 925367 - Imidazole glycerol phosphate synthase subunit hisH COGs: COG0118 Glutamine amidotransferase~HAMAP: Imidazole glycerol phosphate synthase%2C subunit H~InterPro IPR010139:IPR000991~KEGG: ssm:Spirs_1896 imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit~PFAM: Glutamine amidotransferase class-I%2C C-terminal~SPTR: Imidazole glycerol phosphate synthase subunit hisH%3B~TIGRFAM: Imidazole glycerol phosphate synthase%2C subunit H~IMG reference gene:2504919630~PFAM: Glutamine amidotransferase class-I~TIGRFAM: imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0752 Trebr_0753 Trebr_0753 Trebr_0753 926098 927738 - 60 kDa chaperonin COGs: COG0459 Chaperonin GroEL (HSP60 family)~HAMAP: 60 kDa chaperonin~InterPro IPR001844:IPR002423~KEGG: tpp:TPASS_0030 chaperonin GroEL~PFAM: Chaperonin Cpn60/TCP-1~SPTR: 60 kDa chaperonin%3B~TIGRFAM: Chaperonin Cpn60~IMG reference gene:2504919631~PFAM: TCP-1/cpn60 chaperonin family~TIGRFAM: chaperonin GroL gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0753 Trebr_0754 Trebr_0754 Trebr_0754 927857 929458 + Ribonuclease H COGs: COG0673 dehydrogenase and related protein~HAMAP: Ribonuclease H~InterPro IPR000683:IPR002156~KEGG: pjd:Pjdr2_2016 oxidoreductase domain protein~PFAM: Ribonuclease H%3B Oxidoreductase%2C N-terminal~PRIAM: Trans-1%2C2-dihydrobenzene-1%2C2-diol dehydrogenase.%2C Ribonuclease H~SPTR: Oxidoreductase domain protein%3B~IMG reference gene:2504919632~PFAM: RNase H%3B Oxidoreductase family%2C NAD-binding Rossmann fold gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0754 Trebr_0755 Trebr_0755 Trebr_0755 929530 930366 - ABC-type transporter%2C periplasmic subunit family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR001638~KEGG: aoe:Clos_0183 extracellular solute-binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3~SPTR: Extracellular solute-binding protein family 3%3B~IMG reference gene:2504919633~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0755 Trebr_0756 Trebr_0756 Trebr_0756 930543 931916 + Serine-type D-Ala-D-Ala carboxypeptidase COGs: COG1686 D-alanyl-D-alanine carboxypeptidase~InterPro IPR001967~KEGG: sth:STH2587 D-alanyl-D-alanine carboxypeptidase~PFAM: Peptidase S11%2C D-alanyl-D-alanine carboxypeptidase A~PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase~SPTR: D-alanyl-D-alanine carboxypeptidase DacA%3B~IMG reference gene:2504919634~PFAM: D-alanyl-D-alanine carboxypeptidase gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0756 Trebr_0757 Trebr_0757 Trebr_0757 931983 933677 + Dihydroxy-acid dehydratase COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase~HAMAP: Dihydroxy-acid dehydratase~InterPro IPR004404:IPR000581~KEGG: cth:Cthe_2713 dihydroxy-acid dehydratase~PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase~PRIAM: Dihydroxy-acid dehydratase~SPTR: Dihydroxy-acid dehydratase%3B~TIGRFAM: Dihydroxy-acid dehydratase~IMG reference gene:2504919635~PFAM: Dehydratase family~TIGRFAM: dihydroxy-acid dehydratase gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0757 Trebr_0758 Trebr_0758 Trebr_0758 933674 935383 + acetolactate synthase%2C large subunit%2C biosynthetic type COGs: COG0028 Thiamine pyrophosphate-requiring protein~InterPro IPR012846:IPR012001:IPR012000:IPR011766~KEGG: cob:COB47_0622 acetolactate synthase%2C large subunit%2C biosynthetic type~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP binding region%3B Thiamine pyrophosphate enzyme%2C central region%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~PRIAM: Acetolactate synthase~SPTR: Acetolactate synthase%3B~TIGRFAM: Acetolactate synthase%2C large subunit%2C biosynthetic~IMG reference gene:2504919636~PFAM: Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: acetolactate synthase%2C large subunit%2C biosynthetic type gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0758 Trebr_0759 Trebr_0759 Trebr_0759 935426 936658 + LL-diaminopimelate aminotransferase COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR019942:IPR004839~KEGG: cme:CMN323C unknown transaminase~PFAM: Aminotransferase%2C class I/II~PRIAM: LL-diaminopimelate aminotransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: LL-diaminopimelate aminotransferase%2C plant-related~IMG reference gene:2504919637~PFAM: Aminotransferase class I and II~TIGRFAM: LL-diaminopimelate aminotransferase gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0759 Trebr_0760 Trebr_0760 Trebr_0760 936758 937528 - hypothetical protein IMG reference gene:2504919638 gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0760 Trebr_0761 Trebr_0761 Trebr_0761 937525 938727 - hypothetical protein IMG reference gene:2504919639 gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0761 Trebr_0762 Trebr_0762 Trebr_0762 938906 941404 + CheA signal transduction histidine kinase COGs: COG0643 Chemotaxis protein histidine kinase and related kinase~InterProIPR008207:IPR010808:IPR004105:IPR003594:IPR 002545~KEGG: tde:TDE1491 chemotaxis protein CheA~PFAM: CheW-like protein%3B ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region%3B Signal transduction histidine kinase%2C P2 response regulator-binding%3B Signal transduction histidine kinase%2C subgroup%2C homodimeric~SMART: CheW-like protein%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region%3B ATP-binding region%2C ATPase-like~SPTR: P2 response regulator binding domain protein%3B~IMG reference gene:2504919640~PFAM: P2 response regulator binding domain%3B CheW-like domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Signal transducing histidine kinase%2C homodimeric domain%3B Hpt domain gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0762 Trebr_0763 Trebr_0763 Trebr_0763 941414 942844 + MCP methyltransferase%2C CheR-type COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545:IPR000780~KEGG: tde:TDE1492 chemotaxis protein CheW~PFAM: MCP methyltransferase%2C CheR-type%3B CheW-like protein~SMART: CheW-like protein%3B MCP methyltransferase%2C CheR-type~SPTR: CheW%3B~IMG reference gene:2504919641~PFAM: CheW-like domain%3B CheR methyltransferase%2C SAM binding domain gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0763 Trebr_0764 Trebr_0764 Trebr_0764 942866 943330 + CheC domain protein COGs: COG1406 inhibitor of MCP methylation homolog of CheC~InterPro IPR007597~KEGG: sta:STHERM_c17210 putative chemotaxis protein CheC~PFAM: CheC-like protein~SPTR: Putative chemotaxis protein CheC%3B~IMG reference gene:2504919642~PFAM: CheC-like family gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0764 Trebr_0765 Trebr_0765 Trebr_0765 943348 943782 + response regulator receiver protein COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789~KEGG: tde:TDE1494 chemotaxis protein CheY~PFAM: Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region~SPTR: Response regulator receiver domain protein%3B~IMG reference gene:2504919643~PFAM: Response regulator receiver domain gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0765 Trebr_0766 Trebr_0766 Trebr_0766 943784 944485 - transcriptional regulator domain-containing protein InterPro IPR001867~PFAM: Signal transduction response regulator%2C C-terminal~IMG reference gene:2504919644~PFAM: Transcriptional regulatory protein%2C C terminal gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0766 Trebr_0767 Trebr_0767 Trebr_0767 944855 945418 - Elongation factor P COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)~HAMAP: Translation elongation factor P~InterPro IPR011768:IPR013185:IPR001059:IPR015365~KEGG: tde:TDE0968 translation elongation factor P~PFAM: Elongation factor P%2C C-terminal%3B Translation elongation factor%2C KOW-like%3B Translation elongation factor P/YeiP%2C central~SPTR: Elongation factor P%3B~TIGRFAM: Translation elongation factor P~IMG reference gene:2504919646~PFAM: Elongation factor P%2C C-terminal%3B Elongation factor P (EF-P) KOW-like domain%3B Elongation factor P (EF-P) OB domain~TIGRFAM: translation elongation factor P gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0767 Trebr_0768 Trebr_0768 Trebr_0768 945491 946537 - Lysine--tRNA ligase COGs: COG2269 Truncated possibly inactive lysyl-tRNA synthetase (class II)~InterPro IPR004364~KEGG: tde:TDE2282 tRNA synthetase%2C class II family protein~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)~PRIAM: Lysine--tRNA ligase~SPTR: tRNA synthetase%2C class II family%3B~IMG reference gene:2504919647~PFAM: tRNA synthetases class II (D%2C K and N) gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0768 Trebr_0769 Trebr_0769 Trebr_0769 946609 947316 + PP-loop domain protein COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control~InterPro IPR011063~KEGG: tde:TDE0454 hypothetical protein~PFAM: PP-loop~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919648~PFAM: PP-loop family gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0769 Trebr_0770 Trebr_0770 Trebr_0770 947387 948070 + hypothetical protein KEGG: sta:STHERM_c02890 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919649 gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0770 Trebr_0771 Trebr_0771 Trebr_0771 948319 949167 + diguanylate cyclase COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain~InterPro IPR000160~KEGG: lbf:LBF_2547 GGDEF domain receiver component of a two-component response regulator~PFAM: Diguanylate cyclase%2C predicted~SMART: Diguanylate cyclase%2C predicted~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504919650~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0771 Trebr_0772 Trebr_0772 Trebr_0772 949257 950366 + GTP-binding protein YchF COGs: COG0012 GTPase probable translation factor~InterPro IPR004396:IPR002917:IPR013029~KEGG: tde:TDE0305 GTP-dependent nucleic acid-binding protein EngD~PFAM: Protein of unknown function DUF933%3B GTP-binding protein%2C HSR1-related~SPTR: GTP-binding protein YchF%3B~TIGRFAM: Conserved hypothetical protein CHP00092~IMG reference gene:2504919651~PFAM: GTPase of unknown function%3B Protein of unknown function (DUF933)~TIGRFAM: GTP-binding protein YchF gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0772 Trebr_0773 Trebr_0773 Trebr_0773 950375 950753 + pseudogene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0773 Trebr_0774 Trebr_0774 Trebr_0774 950830 951906 + Endonuclease/exonuclease/phosphatase InterPro IPR005135~KEGG: tde:TDE2587 endonuclease/exonuclease/phosphatase family protein~PFAM: Endonuclease/exonuclease/phosphatase~SPTR: Endonuclease/exonuclease/phosphatase family protein%3B~IMG reference gene:2504919653~PFAM: Endonuclease/Exonuclease/phosphatase family gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0774 Trebr_0775 Trebr_0775 Trebr_0775 951992 952222 + hypothetical protein KEGG: sta:STHERM_c21180 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919654 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0775 Trebr_0776 Trebr_0776 Trebr_0776 952519 953178 - 5-formyltetrahydrofolate cyclo-ligase COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase~InterPro IPR002698~KEGG: gka:GK2449 5-formyltetrahydrofolate cyclo-ligase~PFAM: 5-formyltetrahydrofolate cyclo-ligase~SPTR: 5-formyltetrahydrofolate cyclo-ligase%3B~TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase~IMG reference gene:2504919656~PFAM: 5-formyltetrahydrofolate cyclo-ligase family~TIGRFAM: 5%2C10-methenyltetrahydrofolate synthetase gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0776 Trebr_0777 Trebr_0777 Trebr_0777 953175 954566 - Fe-S cluster domain protein COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain~InterPro IPR001450:IPR007202~KEGG: dae:Dtox_0178 4Fe-4S ferredoxin iron-sulfur binding domain protein~PFAM: Putative Fe-S cluster%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~IMG reference gene:2504919657~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B Putative Fe-S cluster gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0777 Trebr_0778 Trebr_0778 Trebr_0778 954563 955006 - putative anti-sigma regulatory factor%2C serine/threonine protein kinase COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase)~InterPro IPR003594~KEGG: cpy:Cphy_3799 putative anti-sigma regulatory factor%2C serine/threonine protein kinase~PFAM: ATP-binding region%2C ATPase-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919658~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0778 Trebr_0779 Trebr_0779 Trebr_0779 955027 955374 - DRTGG domain protein KEGG: csh:Closa_3389 DRTGG domain protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919659~PFAM: DRTGG domain gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0779 Trebr_0780 Trebr_0780 Trebr_0780 955748 957046 + metal dependent phosphohydrolase COGs: COG2206 HD-GYP domain~InterPro IPR006674:IPR003607~KEGG: tde:TDE1256 HD domain-containing protein~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SMART: Metal-dependent phosphohydrolase%2C HD region~SPTR: HD domain protein%3B~IMG reference gene:2504919660~PFAM: HD domain gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0780 Trebr_0781 Trebr_0781 Trebr_0781 957108 957869 - aldo/keto reductase COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase)~InterPro IPR001395~KEGG: msi:Msm_1450 aldo/keto reductase family oxidoreductase~PFAM: Aldo/keto reductase~SPTR: Oxidoreductase%2C aldo/keto reductase family%3B~IMG reference gene:2504919661~PFAM: Aldo/keto reductase family gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0781 Trebr_0782 Trebr_0782 Trebr_0782 957890 959236 - glycyl-tRNA synthetase COGs: COG0423 Glycyl-tRNA synthetase (class II)~InterPro IPR002315:IPR002314:IPR004154~KEGG: tde:TDE0020 glycyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region%3B Anticodon-binding~SPTR: Glycyl-tRNA synthetase%3B~TIGRFAM: Glycyl-tRNA synthetase%2C alpha2 dimer~IMG reference gene:2504919662~PFAM: Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: glycyl-tRNA synthetase%2C dimeric type gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0782 Trebr_0783 Trebr_0783 Trebr_0783 959380 960204 + protein of unknown function DUF306 Meta and HslJ InterPro IPR005184~KEGG: mbn:Mboo_0798 protein of unknown function DUF306%2C MetA and HslJ~PFAM: Domain of unknown function DUF306%2C Meta/HslJ~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919663~PFAM: META domain gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0783 Trebr_0784 Trebr_0784 Trebr_0784 960262 960453 + 50S ribosomal protein L28 COGs: COG0227 Ribosomal protein L28~HAMAP: Ribosomal protein L28~InterPro IPR001383~KEGG: tde:TDE0991 ribosomal protein L28~PFAM: Ribosomal protein L28~SPTR: 50S ribosomal protein L28%3B~TIGRFAM: Ribosomal protein L28~IMG reference gene:2504919664~PFAM: Ribosomal L28 family~TIGRFAM: ribosomal protein L28 gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0784 Trebr_0785 Trebr_0785 Trebr_0785 960591 962114 - phospholipase D/Transphosphatidylase COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase~InterPro IPR001736~KEGG: cno:NT01CX_1068 cardiolipin synthetase~PFAM: Phospholipase D/Transphosphatidylase~SMART: Phospholipase D/Transphosphatidylase~SPTR: Cardiolipin synthase%3B~IMG reference gene:2504919665~PFAM: Phospholipase D Active site motif gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0785 Trebr_0786 Trebr_0786 Trebr_0786 962119 963708 - PEGA domain protein InterPro IPR013229~KEGG: ssm:Spirs_1339 PEGA domain protein~PFAM: PEGA~SPTR: PEGA domain protein%3B~IMG reference gene:2504919666~PFAM: PEGA domain gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0786 Trebr_0787 Trebr_0787 Trebr_0787 963721 965181 - nicotinate phosphoribosyltransferase COGs: COG1488 Nicotinic acid phosphoribosyltransferase~InterPro IPR006405:IPR015977~KEGG: tde:TDE0174 nicotinate phosphoribosyltransferase~PFAM: Nicotinate phosphoribosyltransferase-like~SPTR: Nicotinate phosphoribosyltransferase%3B~TIGRFAM: Nicotinate phosphoribosyltransferase putative~IMG reference gene:2504919667~PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family~TIGRFAM: putative nicotinate phosphoribosyltransferase gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0787 Trebr_0788 Trebr_0788 Trebr_0788 965323 966120 - short-chain dehydrogenase/reductase SDR COGs: COG0300 Short-chain dehydrogenase of various substrate specificities~InterPro IPR002198~KEGG: rha:RHA1_ro01041 short-chain dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919668~PFAM: short chain dehydrogenase gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0788 Trebr_0789 Trebr_0789 Trebr_0789 966261 968048 + alanyl-tRNA synthetase COGs: COG0013 Alanyl-tRNA synthetase~InterPro IPR002318:IPR018164:IPR012947~KEGG: tde:TDE1659 alanyl-tRNA synthetase~PFAM: Alanyl-tRNA synthetase%2C class IIc%2C N-terminal%3B Threonyl/alanyl tRNA synthetase%2C SAD~SPTR: Alanyl-tRNA synthetase%3B~TIGRFAM: Alanyl-tRNA synthetase%2C class IIc~IMG reference gene:2504919669~PFAM: Threonyl and Alanyl tRNA synthetase second additional domain%3B tRNA synthetases class II (A)~TIGRFAM: alanine--tRNA ligase gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0789 Trebr_0790 Trebr_0790 Trebr_0790 968161 969243 + basic membrane protein KEGG: tpp:TPASS_1016 basic membrane protein~SPTR: Basic membrane protein%3B~IMG reference gene:2504919670 gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0790 Trebr_0791 Trebr_0791 Trebr_0791 969250 969666 + NusB antitermination factor COGs: COG0781 Transcription termination factor~HAMAP: N utilization substance protein B-like protein~InterPro IPR011605:IPR006027~KEGG: ssm:Spirs_2439 NusB antitermination factor~PFAM: NusB/RsmB/TIM44~SPTR: N utilization substance protein B homolog%3B~TIGRFAM: NusB antitermination factor~manually curated~IMG reference gene:2504919671~PFAM: NusB family~TIGRFAM: transcription antitermination factor NusB gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0791 Trebr_0792 Trebr_0792 Trebr_0792 969686 971440 + hypothetical protein InterPro IPR019734~KEGG: tde:TDE1656 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504919672 gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0792 Trebr_0793 Trebr_0793 Trebr_0793 971508 971774 - 10 kDa chaperonin COGs: COG0234 Co-chaperonin GroES (HSP10)~HAMAP: Chaperonin Cpn10%2C subgroup~InterPro IPR001476:IPR020818~KEGG: tpp:TPASS_1013 co-chaperonin GroES~PFAM: Chaperonin Cpn10~SPTR: 10 kDa chaperonin%3B~IMG reference gene:2504919673~PFAM: Chaperonin 10 Kd subunit gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0793 Trebr_0794 Trebr_0794 Trebr_0794 972148 973011 + RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR014284:IPR009042:IPR007627:IPR007624:IPR 007630~KEGG: ssm:Spirs_1715 RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily~PFAM: RNA polymerase sigma-70 region 4%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma-70 region 3~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504919674~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0794 Trebr_0795 Trebr_0795 Trebr_0795 973054 975288 - ATP-dependent DNA helicase RecG COGs: COG1200 RecG-like helicase~InterProIPR004609:IPR004365:IPR011545:IPR001650:IPR 014001~KEGG: tde:TDE2579 ATP-dependent DNA helicase RecG~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: ATP-dependent DNA helicase RecG%3B~TIGRFAM: DNA helicase%2C ATP-dependent%2C RecG~IMG reference gene:2504919675~PFAM: Helicase conserved C-terminal domain%3B OB-fold nucleic acid binding domain%3B DEAD/DEAH box helicase~TIGRFAM: ATP-dependent DNA helicase RecG gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0795 Trebr_0796 Trebr_0796 Trebr_0796 975317 975910 - protein of unknown function YGGT InterPro IPR003425~KEGG: tpp:TPASS_0668 hypothetical integral membrane protein~PFAM: Protein of unknown function YGGT~SPTR: Yggt family protein%3B~IMG reference gene:2504919676~PFAM: YGGT family gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0796 Trebr_0797 Trebr_0797 Trebr_0797 975932 979471 - DNA polymerase III%2C alpha subunit COGs: COG0587 DNA polymerase III alpha subunit~InterProIPR004805:IPR004013:IPR011708:IPR004365:IPR 003141~KEGG: tde:TDE2786 DNA polymerase III subunit alpha~PFAM: Bacterial DNA polymerase III%2C alpha subunit%3B PHP%2C C-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~PRIAM: DNA-directed DNA polymerase~SMART: Polymerase/histidinol phosphatase%2C N-terminal~SPTR: DNA polymerase III%2C alpha subunit%3B~TIGRFAM: DNA polymerase III%2C alpha subunit~IMG reference gene:2504919677~PFAM: PHP domain%3B Bacterial DNA polymerase III alpha subunit~TIGRFAM: DNA-directed DNA polymerase III (polc) gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0797 Trebr_0798 Trebr_0798 Trebr_0798 979540 980598 + Polyamine-transporting ATPase COGs: COG1135 ABC-type metal ion transport system ATPase component~InterPro IPR003439:IPR018449:IPR003593~KEGG: fsu:Fisuc_1036 ABC transporter related protein~PFAM: ABC transporter-like%3B NIL domain~PRIAM: Polyamine-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Methionine import ATP-binding protein MetN%3B~IMG reference gene:2504919678~PFAM: ABC transporter%3B NIL domain gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0798 Trebr_0799 Trebr_0799 Trebr_0799 980705 981367 + ABC-type transporter%2C integral membrane subunit COGs: COG2011 ABC-type metal ion transport system permease component~InterPro IPR000515~KEGG: fsu:Fisuc_1035 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: D-methionine transport system permease protein MetI%3B~IMG reference gene:2504919679~PFAM: Binding-protein-dependent transport system inner membrane component gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0799 Trebr_0800 Trebr_0800 Trebr_0800 981460 982272 + NLPA lipoprotein COGs: COG1464 ABC-type metal ion transport system periplasmic component/surface antigen~InterPro IPR004872~KEGG: fsu:Fisuc_1037 NlpA lipoprotein~PFAM: NLPA lipoprotein~SPTR: Lipoprotein%2C YaeC family%3B~IMG reference gene:2504919680~PFAM: NLPA lipoprotein~TIGRFAM: lipoprotein%2C YaeC family gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0800 Trebr_0801 Trebr_0801 Trebr_0801 982358 983902 - hypothetical protein KEGG: ssm:Spirs_0582 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919681 gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0801 Trebr_0802 Trebr_0802 Trebr_0802 983936 985369 - integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003661:IPR003594~KEGG: ssm:Spirs_2696 histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SPTR: Histidine kinase%3B~IMG reference gene:2504919682~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0802 Trebr_0803 Trebr_0803 Trebr_0803 985366 986067 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: ssm:Spirs_2695 two component transcriptional regulator%2C winged helix family~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2504919683~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0803 Trebr_0804 Trebr_0804 Trebr_0804 986069 986947 - YD repeat-containing protein KEGG: ssm:Spirs_2694 YD repeat-containing protein~SPTR: YD repeat-containing protein%3B~IMG reference gene:2504919684~TIGRFAM: YD repeat (two copies) gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0804 Trebr_0805 Trebr_0805 Trebr_0805 987202 987573 - hypothetical protein IMG reference gene:2504919685 gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0805 Trebr_0806 Trebr_0806 Trebr_0806 987641 988255 - beta-Ig-H3/fasciclin InterPro IPR000782~PFAM: FAS1 domain~IMG reference gene:2504919686 gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0806 Trebr_0807 Trebr_0807 Trebr_0807 988492 988845 - helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE1170 DNA-binding protein~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504919687~PFAM: Bacteriophage CI repressor helix-turn-helix domain gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0807 Trebr_0808 Trebr_0808 Trebr_0808 989209 990003 + glucose-1-phosphate cytidylyltransferase COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)~InterPro IPR013446:IPR005835~KEGG: cjn:ICDCCJ_1367 glucose-1-phosphate cytidylyltransferase~PFAM: Nucleotidyl transferase~PRIAM: Glucose-1-phosphate cytidylyltransferase~SPTR: Glucose-1-phosphate cytidylyltransferase%3B~TIGRFAM: Glucose-1-phosphate cytidylyltransferase~IMG reference gene:2504919688~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate cytidylyltransferase gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0808 Trebr_0809 Trebr_0809 Trebr_0809 990004 991068 + CDP-glucose 4%2C6-dehydratase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR013445:IPR001509~KEGG: csh:Closa_0495 CDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: CDP-glucose 4%2C6-dehydratase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CDP-glucose 4%2C6-dehydratase~IMG reference gene:2504919689~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: CDP-glucose 4%2C6-dehydratase gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0809 Trebr_0810 Trebr_0810 Trebr_0810 991085 992425 + DegT/DnrJ/EryC1/StrS aminotransferase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653~KEGG: csh:Closa_0496 DegT/DnrJ/EryC1/StrS aminotransferase~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919690~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0810 Trebr_0811 Trebr_0811 Trebr_0811 992425 994233 + Acetolactate synthase COGs: COG0028 Thiamine pyrophosphate-requiring protein~InterPro IPR012001:IPR012000:IPR011766~KEGG: csh:Closa_0571 thiamine pyrophosphate protein domain protein TPP-binding protein~PFAM: Thiamine pyrophosphate enzyme%2C central region%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP binding region%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~PRIAM: Acetolactate synthase~SPTR: Acetolactate synthase%3B~IMG reference gene:2504919691~PFAM: Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0811 Trebr_0812 Trebr_0812 Trebr_0812 994287 995891 + pyruvate carboxyltransferase COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR000891~KEGG: glo:Glov_0787 pyruvate carboxyltransferase~PFAM: Pyruvate carboxyltransferase~SPTR: Pyruvate carboxyltransferase%3B~IMG reference gene:2504919692~PFAM: HMGL-like gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0812 Trebr_0813 Trebr_0813 Trebr_0813 995895 996947 + 3-dehydroquinate synthase COGs: COG0337 3-dehydroquinate synthetase~InterPro IPR002658~KEGG: glo:Glov_0789 3-dehydroquinate synthase~PFAM: 3-dehydroquinate synthase AroB~PRIAM: 3-dehydroquinate synthase~SPTR: 3-dehydroquinate synthase%3B~IMG reference gene:2504919693~PFAM: 3-dehydroquinate synthase gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0813 Trebr_0814 Trebr_0814 Trebr_0814 996982 997890 + NAD-dependent epimerase/dehydratase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR001509~KEGG: mst:Msp_0537 nucleoside-diphosphate-sugar epimerase~PFAM: NAD-dependent epimerase/dehydratase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919694~PFAM: NAD dependent epimerase/dehydratase family gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0814 Trebr_0815 Trebr_0815 Trebr_0815 998403 999749 + O-unit flippase%2C putative KEGG: pfl:PFL_5099 O-unit flippase%2C putative~SPTR: Putative O-unit flippase%3B~IMG reference gene:2504919695 gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0815 Trebr_0816 Trebr_0816 Trebr_0816 999739 1000665 + glycosyl transferase family 2 InterPro IPR001173~KEGG: coc:Coch_0702 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase%2C group 2 family%3B~IMG reference gene:2504919696~PFAM: Glycosyl transferase family 2 gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0816 Trebr_0817 Trebr_0817 Trebr_0817 1000805 1001587 + hypothetical protein KEGG: rba:RB343 hypothetical protein~SPTR: Putative uncharacterized protein%3B~manually curated~IMG reference gene:2504919697 gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0817 Trebr_0818 Trebr_0818 Trebr_0818 1001709 1002350 + hypothetical protein COGs: COG0110 Acetyltransferase (isoleucine patch superfamily)~InterPro IPR001451~KEGG: btb:BMB171_C3220 chloramphenicol acetyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919698~PFAM: Bacterial transferase hexapeptide (three repeats) gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0818 Trebr_0819 Trebr_0819 Trebr_0819 1002350 1003450 + hypothetical protein KEGG: coc:Coch_0700 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919699 gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0819 Trebr_0820 Trebr_0820 Trebr_0820 1003465 1004601 + putative capsular polysaccharide polymerase KEGG: bfr:BF1440 putative capsular polysaccharide polymerase~SPTR: Putative capsular polysaccharide polymerase%3B~IMG reference gene:2504919700 gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0820 Trebr_0821 Trebr_0821 Trebr_0821 1004681 1005787 + glycosyl transferase group 1 InterPro IPR001296~KEGG: bth:BT_0478 hypothetical protein~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycoside transferase family 4%3B~IMG reference gene:2504919701~PFAM: Glycosyl transferases group 1 gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0821 Trebr_0822 Trebr_0822 Trebr_0822 1005781 1006632 + glycosyl transferase family 2 COGs: COG1216 glycosyltransferase~InterPro IPR001173~KEGG: ppn:Palpr_1287 glycosyl transferase family protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase family protein%3B~IMG reference gene:2504919702~PFAM: Glycosyl transferase family 2 gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0822 Trebr_0823 Trebr_0823 Trebr_0823 1006647 1007141 + hypothetical protein IMG reference gene:2504919703 gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0823 Trebr_0824 Trebr_0824 Trebr_0824 1007267 1009018 + threonyl-tRNA synthetase COGs: COG0441 Threonyl-tRNA synthetase~InterPro IPR002320:IPR012947:IPR002314:IPR004154~KEGG: tde:TDE1090 threonyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region%3B Threonyl/alanyl tRNA synthetase%2C SAD%3B Anticodon-binding~SPTR: Threonyl-tRNA synthetase%3B~TIGRFAM: Threonyl-tRNA synthetase%2C class IIa~IMG reference gene:2504919704~PFAM: Anticodon binding domain%3B Threonyl and Alanyl tRNA synthetase second additional domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: threonyl-tRNA synthetase gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0824 Trebr_0825 Trebr_0825 Trebr_0825 1009187 1009987 - hypothetical protein KEGG: tde:TDE1091 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919705 gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0825 Trebr_0826 Trebr_0826 Trebr_0826 1009984 1011141 - hypothetical protein KEGG: tde:TDE2070 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919706 gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0826 Trebr_0827 Trebr_0827 Trebr_0827 1011138 1012091 - hypothetical protein IMG reference gene:2504919707 gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0827 Trebr_0828 Trebr_0828 Trebr_0828 1012145 1012789 + lipolytic protein G-D-S-L family COGs: COG2755 Lysophospholipase L1 and related esterase~InterPro IPR001087~KEGG: chd:Calhy_2099 lipolytic protein g-D-S-l family~PFAM: Lipase%2C GDSL~SPTR: Lipolytic enzyme%3B~IMG reference gene:2504919708~PFAM: GDSL-like Lipase/Acylhydrolase gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0828 Trebr_0829 Trebr_0829 Trebr_0829 1012889 1013293 + preprotein translocase%2C YajC subunit COGs: COG1862 Preprotein translocase subunit YajC~InterPro IPR003849~KEGG: ssm:Spirs_3238 preprotein translocase%2C YajC subunit~PFAM: YajC~SPTR: Preprotein translocase%2C YajC subunit%3B~TIGRFAM: YajC~IMG reference gene:2504919709~PFAM: Preprotein translocase subunit~TIGRFAM: preprotein translocase%2C YajC subunit gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0829 Trebr_0830 Trebr_0830 Trebr_0830 1013317 1015053 + protein-export membrane protein SecD COGs: COG0342 Preprotein translocase subunit SecD~InterPro IPR005791:IPR003335~KEGG: tde:TDE0681 preprotein translocase subunit SecD~PFAM: SecD/SecF/SecDF export membrane protein~SPTR: Protein-export membrane protein SecD%3B~TIGRFAM: SecD export membrane protein%3B SecD/SecF/SecDF export membrane protein~IMG reference gene:2504919710~PFAM: Protein export membrane protein%3B SecD/SecF GG Motif~TIGRFAM: protein-export membrane protein SecD%3B protein-export membrane protein%2C SecD/SecF family gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0830 Trebr_0831 Trebr_0831 Trebr_0831 1015053 1016300 + protein-export membrane protein SecF COGs: COG0341 Preprotein translocase subunit SecF~InterPro IPR005665:IPR003335~KEGG: tde:TDE0680 preprotein translocase subunit SecF~PFAM: SecD/SecF/SecDF export membrane protein~SPTR: Protein-export membrane protein SecF%3B~TIGRFAM: SecF protein%3B SecD/SecF/SecDF export membrane protein~IMG reference gene:2504919711~PFAM: Protein export membrane protein~TIGRFAM: protein-export membrane protein%2C SecD/SecF family%3B protein-export membrane protein SecF gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0831 Trebr_0832 Trebr_0832 Trebr_0832 1016461 1017393 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase COGs: COG0761 Penicillin tolerance protein~HAMAP: LytB protein~InterPro IPR003451~KEGG: tde:TDE1096 hydroxymethylbutenyl pyrophosphate reductase~PFAM: LytB protein~PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase%3B~TIGRFAM: LytB protein~IMG reference gene:2504919712~PFAM: LytB protein~TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0832 Trebr_0833 Trebr_0833 Trebr_0833 1017469 1017960 - YbaK/prolyl-tRNA synthetase associated region COGs: COG2606 conserved hypothetical protein~InterPro IPR007214~KEGG: amt:Amet_1540 YbaK/prolyl-tRNA synthetase associated region~PFAM: YbaK/aminoacyl-tRNA synthetase associated region~SPTR: Uncharacterized conserved protein%3B~IMG reference gene:2504919713~PFAM: YbaK / prolyl-tRNA synthetases associated domain gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0833 Trebr_0834 Trebr_0834 Trebr_0834 1018199 1019467 + Phosphoglycerate kinase COGs: COG0126 3-phosphoglycerate kinase~HAMAP: Phosphoglycerate kinase~InterPro IPR001576~KEGG: tde:TDE1715 phosphoglycerate kinase~PFAM: Phosphoglycerate kinase~PRIAM: Phosphoglycerate kinase~SPTR: Phosphoglycerate kinase%3B~IMG reference gene:2504919714~PFAM: Phosphoglycerate kinase gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0834 Trebr_0835 Trebr_0835 Trebr_0835 1019672 1020484 + Conserved hypothetical protein CHP02757 InterPro IPR014127~KEGG: pmz:HMPREF0659_A5225 conserved hypothetical protein TIGR02757~PFAM: Conserved hypothetical protein CHP02757~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP02757~IMG reference gene:2504919715~PFAM: Protein of unknown function (DUF2400)~TIGRFAM: TIGR02757 family protein gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0835 Trebr_0836 Trebr_0836 Trebr_0836 1020577 1022184 + 2-isopropylmalate synthase/homocitrate synthase family protein COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR005675:IPR000891:IPR013709~KEGG: cth:Cthe_2519 putative alpha-isopropylmalate/homocitrate synthase family transferase~PFAM: 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain%3B Pyruvate carboxyltransferase~PRIAM: (R)-citramalate synthase~SPTR: 2-isopropylmalate synthase/homocitrate synthase family protein%3B~TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase related~IMG reference gene:2504919716~PFAM: HMGL-like%3B LeuA allosteric (dimerisation) domain~TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0836 Trebr_0837 Trebr_0837 Trebr_0837 1022440 1022934 + hypothetical protein IMG reference gene:2504919717 gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0837 Trebr_0838 Trebr_0838 Trebr_0838 1023289 1024059 + short-chain dehydrogenase/reductase SDR COGs: COG0300 Short-chain dehydrogenase of various substrate specificities~InterPro IPR002198~KEGG: ele:Elen_1205 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR~SPTR: Short-chain dehydrogenase/reductase SDR%3B~IMG reference gene:2504919719~PFAM: short chain dehydrogenase gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0838 Trebr_0839 Trebr_0839 Trebr_0839 1024521 1026026 + Glycine hydroxymethyltransferase COGs: COG0112 Glycine/serine hydroxymethyltransferase~InterPro IPR001085~KEGG: tde:TDE2668 serine hydroxymethyltransferase~PFAM: Serine hydroxymethyltransferase~PRIAM: Glycine hydroxymethyltransferase~SPTR: Serine hydroxymethyltransferase%3B~IMG reference gene:2504919720~PFAM: Serine hydroxymethyltransferase gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0839 Trebr_0840 Trebr_0840 Trebr_0840 1026125 1026643 - Adenine phosphoribosyltransferase COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein~HAMAP: Adenine phosphoribosyl transferase~InterPro IPR005764:IPR000836~KEGG: tde:TDE1684 adenine phosphoribosyltransferase~PFAM: Phosphoribosyltransferase~SPTR: Adenine phosphoribosyltransferase%3B~TIGRFAM: Adenine phosphoribosyl transferase~IMG reference gene:2504919721~PFAM: Phosphoribosyl transferase domain~TIGRFAM: adenine phosphoribosyltransferase gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0840 Trebr_0841 Trebr_0841 Trebr_0841 1026671 1027588 - Prephenate dehydrogenase COGs: COG0287 Prephenate dehydrogenase~InterPro IPR003099~KEGG: elm:ELI_0131 prephenate dehydrogenase~PFAM: Prephenate dehydrogenase~PRIAM: Prephenate dehydrogenase~SPTR: Prephenate dehydrogenase%3B~IMG reference gene:2504919722~PFAM: Prephenate dehydrogenase gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0841 Trebr_0842 Trebr_0842 Trebr_0842 1027585 1028616 - phospho-2-dehydro-3-deoxyheptonate aldolase COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase~InterPro IPR006268:IPR006218~KEGG: elm:ELI_0130 3-deoxy-7-phosphoheptulonate synthase~PFAM: DAHP synthetase I/KDSA~PRIAM: 3-deoxy-7-phosphoheptulonate synthase~SPTR: 3-deoxy-7-phosphoheptulonate synthase%3B~TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase%2C subtype 2~IMG reference gene:2504919723~PFAM: DAHP synthetase I family~TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0842 Trebr_0843 Trebr_0843 Trebr_0843 1029082 1030047 + transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR000005:IPR018060~KEGG: ccb:Clocel_0173 transcriptional regulator%2C AraC family~PFAM: Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504919724~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0843 Trebr_0844 Trebr_0844 Trebr_0844 1030136 1032613 + Elongator protein 3/MiaB/NifB InterPro IPR006638~KEGG: dfe:Dfer_2787 radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504919725 gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0844 Trebr_0845 Trebr_0845 Trebr_0845 1032675 1035545 + UvrABC system protein A COGs: COG0178 Excinuclease ATPase subunit~HAMAP: UvrABC system protein A~InterPro IPR004602:IPR003439:IPR003593~KEGG: tde:TDE1010 excinuclease ABC subunit A~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: Excinuclease ABC subunit A%3B~TIGRFAM: Excinuclease ABC%2C A subunit~IMG reference gene:2504919726~PFAM: ABC transporter~TIGRFAM: excinuclease ABC%2C A subunit gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0845 Trebr_0846 Trebr_0846 Trebr_0846 1035542 1038781 + hypothetical protein COGs: COG1452 Organic solvent tolerance protein OstA~KEGG: tde:TDE1011 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919727 gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0846 Trebr_0847 Trebr_0847 Trebr_0847 1038856 1040148 + Glutamate synthase (NADPH) COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase~InterPro IPR013027~KEGG: hmo:HM1_0999 glutamate synthase (nadph) beta chain%2C putative~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PRIAM: Glutamate synthase (NADPH)~SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B~IMG reference gene:2504919728~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0847 Trebr_0848 Trebr_0848 Trebr_0848 1040270 1040527 - TfoX domain-containing protein InterPro IPR007077~KEGG: clj:CLJU_c35100 hypothetical protein~PFAM: TfoX%2C C-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919729~PFAM: TfoX C-terminal domain gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0848 Trebr_0849 Trebr_0849 Trebr_0849 1040643 1041023 - hypothetical protein KEGG: ran:Riean_1760 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919730~PFAM: Bacterial DNA-binding protein~TIGRFAM: DNA-binding protein%2C histone-like%2C putative gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0849 Trebr_0850 Trebr_0850 Trebr_0850 1041511 1043550 - NAD+ synthetase COGs: COG0171 NAD synthase~InterPro IPR003694:IPR003010~KEGG: cpy:Cphy_3426 NAD+ synthetase~PFAM: NAD+ synthase%3B Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: NAD+ synthase~IMG reference gene:2504919731~PFAM: NAD synthase%3B Carbon-nitrogen hydrolase~TIGRFAM: NAD+ synthetase gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0850 Trebr_0851 Trebr_0851 Trebr_0851 1043727 1044563 + sodium/hydrogen exchanger KEGG: cpy:Cphy_3620 sodium/hydrogen exchanger~SPTR: Sodium/hydrogen exchanger%3B~IMG reference gene:2504919732~PFAM: Sodium/hydrogen exchanger family gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0851 Trebr_0852 Trebr_0852 Trebr_0852 1044661 1045476 - electron transport complex%2C RnfABCDGE type%2C B subunit COGs: COG2878 NADH:ubiquinone oxidoreductase subunit RnfB~InterPro IPR010207:IPR007202:IPR001450~KEGG: tde:TDE1894 ferredoxin~PFAM: Putative Fe-S cluster%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: Iron-sulfur cluster-binding protein%3B~TIGRFAM: Electron transport complex%2C RnfB~IMG reference gene:2504919733~PFAM: Putative Fe-S cluster%3B 4Fe-4S binding domain~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C B subunit gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0852 Trebr_0853 Trebr_0853 Trebr_0853 1045486 1046064 - electron transport complex%2C RnfABCDGE type%2C A subunit COGs: COG4657 NADH:ubiquinone oxidoreductase subunit RnfA~InterPro IPR011293:IPR003667~KEGG: tde:TDE0834 Na(+)-translocating NADH-quinone reductase%2C E subunit~PFAM: Electron transport complex%2C Rnf/Nqr~SPTR: Na(+)-translocating NADH-quinone reductase subunit e (Na(+)-translocating nqr subunit e)%3B~TIGRFAM: Electron transport complex%2C RnfA~IMG reference gene:2504919734~PFAM: Rnf-Nqr subunit%2C membrane protein~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C A subunit gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0853 Trebr_0854 Trebr_0854 Trebr_0854 1046061 1046684 - electron transport complex%2C RnfABCDGE type%2C E subunit COGs: COG4660 NADH:ubiquinone oxidoreductase subunit RnfE~InterPro IPR010968:IPR003667~KEGG: tde:TDE0835 electron transport complex RsxE subunit~PFAM: Electron transport complex%2C Rnf/Nqr~SPTR: Na(+)-translocating NADH-quinone reductase subunit d (Na(+)-translocating nqr subunit d)%3B~TIGRFAM: Electron transport complex%2C RnfE~IMG reference gene:2504919735~PFAM: Rnf-Nqr subunit%2C membrane protein~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C E subunit gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0854 Trebr_0855 Trebr_0855 Trebr_0855 1046695 1047816 - FMN-binding domain protein COGs: COG4659 NADH:ubiquinone oxidoreductase subunit RnfG~InterPro IPR007329~KEGG: tde:TDE0836 Na(+)-translocating NADH-quinone reductase%2C C subunit~PFAM: FMN-binding~SPTR: Na(+)-translocating NADH-quinone reductase%2C C subunit%3B~IMG reference gene:2504919736~PFAM: FMN-binding domain~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C G subunit gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0855 Trebr_0856 Trebr_0856 Trebr_0856 1047813 1048781 - electron transport complex%2C RnfABCDGE type%2C D subunit COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD~InterPro IPR011303:IPR004338~KEGG: tde:TDE0837 Na(+)-translocating NADH-quinone reductase%2C B subunit~PFAM: NADH-quinone reductase NQR2/RnfD~SPTR: Na(+)-translocating NADH-quinone reductase%2C B subunit%3B~TIGRFAM: Electron transport complex%2C RnfD~IMG reference gene:2504919737~PFAM: NQR2%2C RnfD%2C RnfE family~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C D subunit gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0856 Trebr_0857 Trebr_0857 Trebr_0857 1048782 1050185 - Electron transport complex protein rnfC COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC~HAMAP: Electron transport complex protein rnfC~InterPro IPR010208:IPR011538~KEGG: tde:TDE0838 Na(+)-translocating NADH-quinone reductase%2C A subunit~PFAM: NADH:ubiquinone oxidoreductase%2C 51kDa subunit~SPTR: Na(+)-translocating NADH-quinone reductase%2C A subunit%3B~TIGRFAM: Electron transport complex%2C RnfC~IMG reference gene:2504919738~PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C C subunit gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0857 Trebr_0858 Trebr_0858 Trebr_0858 1050254 1051270 + OmpA family protein KEGG: tde:TDE2028 OmpA family protein~SPTR: OmpA family protein%3B~IMG reference gene:2504919739 gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0858 Trebr_0859 Trebr_0859 Trebr_0859 1051267 1054401 + OmpA/MotB domain protein COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein~InterPro IPR006665~KEGG: tde:TDE2028 OmpA family protein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: OmpA family protein%3B~IMG reference gene:2504919740~PFAM: OmpA family gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0859 Trebr_0860 Trebr_0860 Trebr_0860 1054589 1055818 + diguanylate phosphodiesterase COGs: COG2200 FOG: EAL domain~InterPro IPR001633~KEGG: dap:Dacet_1733 diguanylate phosphodiesterase~PFAM: Diguanylate phosphodiesterase%2C predicted~SMART: Diguanylate phosphodiesterase%2C predicted~SPTR: Diguanylate phosphodiesterase%3B~IMG reference gene:2504919741~PFAM: EAL domain gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0860 Trebr_0861 Trebr_0861 Trebr_0861 1055827 1057206 + 3-phosphoshikimate 1-carboxyvinyltransferase COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase~HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase%2C subgroup~InterPro IPR006264:IPR001986~KEGG: sta:STHERM_c03680 3-phosphoshikimate 1-carboxyvinyltransferase~PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase%2C core~PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase~SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase 2%3B~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase%2C subgroup~IMG reference gene:2504919742~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0861 Trebr_0862 Trebr_0862 Trebr_0862 1057244 1058701 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: sta:STHERM_c20950 hypothetical protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Putative methyl-accepting chemotaxis protein%3B~IMG reference gene:2504919743~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0862 Trebr_0863 Trebr_0863 Trebr_0863 1058844 1059932 - branched-chain amino acid aminotransferase COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase~InterPro IPR005786:IPR001544~KEGG: sta:STHERM_c01780 putative branched-chain-amino-acid aminotransferase~PFAM: Aminotransferase%2C class IV~PRIAM: Branched-chain-amino-acid transaminase~SPTR: Branched-chain amino acid aminotransferase%3B~TIGRFAM: Branched-chain amino acid aminotransferase II~IMG reference gene:2504919744~PFAM: Aminotransferase class IV~TIGRFAM: branched-chain amino acid aminotransferase%2C group II gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0863 Trebr_0864 Trebr_0864 Trebr_0864 1060008 1060169 - hypothetical protein IMG reference gene:2504919745 gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0864 Trebr_0865 Trebr_0865 Trebr_0865 1060166 1061575 - OmpA/MotB domain protein COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein~InterPro IPR006665~KEGG: tpp:TPASS_0624 hypothetical protein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: OmpA family protein%3B~IMG reference gene:2504919746~PFAM: OmpA family gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0865 Trebr_0866 Trebr_0866 Trebr_0866 1061582 1062850 - Lytic transglycosylase catalytic InterPro IPR008258:IPR018392:IPR002482~KEGG: tde:TDE2149 Slt family transglycosylase~PFAM: Lytic transglycosylase-like%2C catalytic%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: Transglycosylase%2C SLT family%3B~IMG reference gene:2504919747~PFAM: Transglycosylase SLT domain%3B LysM domain gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0866 Trebr_0867 Trebr_0867 Trebr_0867 1062847 1063890 - hypothetical protein KEGG: tde:TDE2150 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919748 gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0867 Trebr_0868 Trebr_0868 Trebr_0868 1063974 1064591 + hypothetical protein IMG reference gene:2504919749 gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0868 Trebr_0869 Trebr_0869 Trebr_0869 1064594 1066339 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR001440:IPR019734~KEGG: tde:TDE1053 putative lipoprotein~PFAM: Tetratricopeptide TPR-1~SMART: Tetratricopeptide repeat~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504919750 gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0869 Trebr_0870 Trebr_0870 Trebr_0870 1066426 1066584 + Rubredoxin-type Fe(Cys)4 protein COGs: COG1773 Rubredoxin~InterPro IPR004039~KEGG: tde:TDE1052 rubredoxin~PFAM: Rubredoxin-type Fe(Cys)4 protein~SPTR: Rubredoxin%3B~IMG reference gene:2504919751~PFAM: Rubredoxin gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0870 Trebr_0871 Trebr_0871 Trebr_0871 1066670 1067902 - protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: tde:TDE2283 permease%2C putative~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Permease%2C putative%3B~IMG reference gene:2504919752~PFAM: Predicted permease gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0871 Trebr_0872 Trebr_0872 Trebr_0872 1067895 1068599 - Phosphonate-transporting ATPase COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: tpp:TPASS_0964 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Macrolide export ATP-binding/permease protein MacB%3B~IMG reference gene:2504919753~PFAM: ABC transporter gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0872 Trebr_0873 Trebr_0873 Trebr_0873 1068604 1069578 - efflux transporter%2C RND family%2C MFP subunit COGs: COG0845 Membrane-fusion protein~InterPro IPR006143~KEGG: tpp:TPASS_0965 possible membrane fusion protein~PFAM: Secretion protein HlyD~SPTR: Efflux transporter%2C RND family%2C MFP subunit%3B~TIGRFAM: Secretion protein HlyD~IMG reference gene:2504919754~PFAM: HlyD family secretion protein gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0873 Trebr_0874 Trebr_0874 Trebr_0874 1069648 1071093 - hypothetical protein KEGG: tde:TDE2285 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919755 gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0874 Trebr_0875 Trebr_0875 Trebr_0875 1071274 1072902 + CTP synthase COGs: COG0504 CTP synthase (UTP-ammonia lyase)~InterPro IPR004468:IPR017456:IPR000991~KEGG: sta:STHERM_c21900 CTP synthase~PFAM: CTP synthase%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal~PRIAM: CTP synthase~SPTR: CTP synthase%3B~TIGRFAM: CTP synthase~IMG reference gene:2504919756~PFAM: Glutamine amidotransferase class-I%3B CTP synthase N-terminus~TIGRFAM: CTP synthase gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0875 Trebr_0876 Trebr_0876 Trebr_0876 1072902 1073486 + hypothetical protein KEGG: tde:TDE0646 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919757 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0876 Trebr_0877 Trebr_0877 Trebr_0877 1073483 1074133 + OstA family protein InterPro IPR005653~KEGG: tde:TDE0645 hypothetical protein~PFAM: OstA-like protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919758~PFAM: OstA-like protein gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0877 Trebr_0878 Trebr_0878 Trebr_0878 1074126 1074884 + Sulfate-transporting ATPase COGs: COG1137 ABC-type (unclassified) transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: tde:TDE0644 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504919759~PFAM: ABC transporter gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0878 Trebr_0879 Trebr_0879 Trebr_0879 1074908 1075366 + hemerythrin-like metal-binding protein COGs: COG2703 Hemerythrin~InterPro IPR012827:IPR012312~KEGG: brm:Bmur_1400 hemerythrin-like metal-binding protein~PFAM: Haemerythrin/HHE cation-binding motif~SPTR: Hemerythrin-like metal-binding protein%3B~TIGRFAM: Haemerythrin-like%2C metal-binding~IMG reference gene:2504919760~TIGRFAM: hemerythrin-like metal-binding domain gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0879 Trebr_0880 Trebr_0880 Trebr_0880 1075385 1075837 + hemerythrin-like metal-binding protein COGs: COG2703 Hemerythrin~InterPro IPR012827:IPR012312~KEGG: bpo:BP951000_1676 hemerythrin~PFAM: Haemerythrin/HHE cation-binding motif~SPTR: Hemerythrin family protein%3B~TIGRFAM: Haemerythrin-like%2C metal-binding~IMG reference gene:2504919761~PFAM: Hemerythrin HHE cation binding domain~TIGRFAM: hemerythrin-like metal-binding domain gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0880 Trebr_0881 Trebr_0881 Trebr_0881 1075900 1077720 + DNA topoisomerase type IIA subunit B region 2 domain protein COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit~InterPro IPR003594:IPR013506:IPR001241~KEGG: tde:TDE2245 DNA topoisomerase IV subunit B~PFAM: DNA topoisomerase%2C type IIA%2C subunit B%2C region 2%3B ATP-binding region%2C ATPase-like~SMART: DNA topoisomerase%2C type IIA%2C subunit B or N-terminal~SPTR: DNA topoisomerase 4 subunit B%3B~IMG reference gene:2504919762~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B DNA gyrase B%3B DNA gyrase B subunit%2C carboxyl terminus gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0881 Trebr_0882 Trebr_0882 Trebr_0882 1077741 1079687 + DNA topoisomerase (ATP-hydrolyzing) COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit~InterPro IPR002205~KEGG: tde:TDE2118 DNA topoisomerase IV subunit A~PFAM: DNA topoisomerase%2C type IIA%2C subunit A or C-terminal~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase%2C type IIA%2C subunit A or C-terminal~SPTR: DNA gyrase subunit A%3B~IMG reference gene:2504919763~PFAM: DNA gyrase/topoisomerase IV%2C subunit A gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0882 Trebr_0883 Trebr_0883 Trebr_0883 1079725 1080654 + hypothetical protein KEGG: bwe:BcerKBAB4_5101 hypothetical protein~SPTR: Integral membrane protein%3B~IMG reference gene:2504919764~PFAM: Protein of unknown function (DUF975) gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0883 Trebr_0884 Trebr_0884 Trebr_0884 1080658 1081287 + Uncharacterized protein family UPF0029%2C Impact%2C N-terminal protein COGs: COG1739 conserved hypothetical protein~InterPro IPR001498~KEGG: tde:TDE1321 hypothetical protein~PFAM: Uncharacterised protein family UPF0029%2C Impact%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919765~PFAM: Uncharacterized protein family UPF0029%3B Domain of unknown function (DUF1949)~TIGRFAM: uncharacterized protein%2C YigZ family gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0884 Trebr_0885 Trebr_0885 Trebr_0885 1081244 1082182 - hypothetical protein KEGG: ssm:Spirs_0536 type IV pilus assembly PilZ~SPTR: Type IV pilus assembly PilZ%3B~IMG reference gene:2504919766 gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0885 Trebr_0886 Trebr_0886 Trebr_0886 1082316 1083770 - Asparaginyl-tRNA synthetase COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase~HAMAP: Asparaginyl-tRNA synthetase~InterPro IPR004522:IPR004365:IPR004364~KEGG: tde:TDE0980 asparaginyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~PRIAM: Asparagine--tRNA ligase~SPTR: Asparaginyl-tRNA synthetase%3B~TIGRFAM: Asparaginyl-tRNA synthetase%2C class IIb~IMG reference gene:2504919767~PFAM: tRNA synthetases class II (D%2C K and N)%3B OB-fold nucleic acid binding domain~TIGRFAM: asparaginyl-tRNA synthetase gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0886 Trebr_0887 Trebr_0887 Trebr_0887 1083920 1085113 + hypothetical protein KEGG: dma:DMR_05530 hypothetical membrane protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919768~PFAM: Acyltransferase family gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0887 Trebr_0888 Trebr_0888 Trebr_0888 1085377 1085844 + Uncharacterized protein family UPF0066 COGs: COG1720 conserved hypothetical protein~InterPro IPR001378~KEGG: ssm:Spirs_4222 protein of unknown function UPF0066~PFAM: Uncharacterised protein family UPF0066~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919769~PFAM: Uncharacterised protein family UPF0066~TIGRFAM: putative methyltransferase%2C YaeB/AF_0241 family gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0888 Trebr_0889 Trebr_0889 Trebr_0889 1085869 1086894 - Helix-turn-helix%2C AraC domain protein InterPro IPR018060~KEGG: ssm:Spirs_4223 transcriptional regulator%2C AraC family~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504919770~PFAM: Bacterial transcription activator%2C effector binding domain gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0889 Trebr_0890 Trebr_0890 Trebr_0890 1086972 1088378 + signal recognition particle protein COGs: COG0541 Signal recognition particle GTPase~InterProIPR004780:IPR013822:IPR000897:IPR004125:IPR 003593~KEGG: tde:TDE2089 signal recognition particle protein~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle%3B Signal recognition particle%2C SRP54 subunit%2C M-domain~SMART: ATPase%2C AAA+ type%2C core~SPTR: Signal recognition particle protein%3B~TIGRFAM: Signal recognition particle%2C SRP~IMG reference gene:2504919771~PFAM: SRP54-type protein%2C GTPase domain%3B SRP54-type protein%2C helical bundle domain%3B Signal peptide binding domain~TIGRFAM: signal recognition particle protein gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0890 Trebr_0891 Trebr_0891 Trebr_0891 1088685 1091450 + MMPL domain protein COGs: COG1033 exporter of the RND superfamily protein~InterPro IPR004869~KEGG: ssm:Spirs_3722 hypothetical protein~PFAM: MMPL~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919772~PFAM: MMPL family gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0891 Trebr_0892 Trebr_0892 Trebr_0892 1091489 1092259 + putative sigma E regulatory protein%2C MucB/RseB KEGG: ssm:Spirs_3728 putative sigma E regulatory protein%2C MucB/RseB~SPTR: Putative sigma E regulatory protein%2C MucB/RseB%3B~IMG reference gene:2504919773~PFAM: Protein of unknown function (DUF1329) gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0892 Trebr_0893 Trebr_0893 Trebr_0893 1092286 1093845 + hypothetical protein KEGG: ssm:Spirs_3729 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919774 gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0893 Trebr_0894 Trebr_0894 Trebr_0894 1093904 1095058 - diguanylate cyclase COGs: COG2199 FOG: GGDEF domain~InterPro IPR000160~KEGG: bpb:bpr_I1756 GGDEF domain-containing protein~PFAM: Diguanylate cyclase%2C predicted~SMART: Diguanylate cyclase%2C predicted~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504919775~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0894 Trebr_0895 Trebr_0895 Trebr_0895 1095261 1096982 + hypothetical protein KEGG: tde:TDE2784 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919776 gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0895 Trebr_0896 Trebr_0896 Trebr_0896 1096988 1098028 + Multi-copper polyphenol oxidoreductase%2C laccase COGs: COG1496 conserved hypothetical protein~InterPro IPR003730~KEGG: ssm:Spirs_1800 protein of unknown function DUF152~PFAM: Multi-copper polyphenol oxidoreductase%2C laccase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919777~PFAM: Multi-copper polyphenol oxidoreductase laccase~TIGRFAM: uncharacterized protein%2C YfiH family gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0896 Trebr_0897 Trebr_0897 Trebr_0897 1098126 1099262 - glycosyl hydrolase family 88 COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein~InterPro IPR010905~KEGG: cpy:Cphy_0203 glycosy hydrolase family protein~PFAM: Glycosyl hydrolase%2C family 88~SPTR: Glycosyl hydrolase family 88%3B~IMG reference gene:2504919778~PFAM: Glycosyl Hydrolase Family 88 gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0897 Trebr_0898 Trebr_0898 Trebr_0898 1099369 1101165 + Arginyl-tRNA synthetase COGs: COG0018 Arginyl-tRNA synthetase~HAMAP: Arginyl-tRNA synthetase%2C class Ic~InterPro IPR001278:IPR005148:IPR015945:IPR008909~KEGG: tde:TDE0971 arginyl-tRNA synthetase~PFAM: Arginyl-tRNA synthetase%2C class Ic%2C core%3B Arginyl tRNA synthetase%2C class Ic%2C N-terminal%3B DALR anticodon binding~PRIAM: Arginine--tRNA ligase~SPTR: Arginyl-tRNA synthetase%3B~TIGRFAM: Arginyl-tRNA synthetase%2C class Ic~IMG reference gene:2504919779~PFAM: DALR anticodon binding domain%3B Arginyl tRNA synthetase N terminal domain%3B tRNA synthetases class I (R)~TIGRFAM: arginyl-tRNA synthetase gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0898 Trebr_0899 Trebr_0899 Trebr_0899 1101169 1101786 - hypothetical protein IMG reference gene:2504919780 gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0899 Trebr_0900 Trebr_0900 Trebr_0900 1101927 1103723 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: azl:AZL_007150 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504919781~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0900 Trebr_0901 Trebr_0901 Trebr_0901 1103886 1104320 - hypothetical protein KEGG: dhd:Dhaf_2679 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919782 gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0901 Trebr_0902 Trebr_0902 Trebr_0902 1104500 1104745 + 30S ribosomal protein S16 COGs: COG0228 Ribosomal protein S16~HAMAP: Ribosomal protein S16~InterPro IPR000307~KEGG: tde:TDE0881 ribosomal protein S16~PFAM: Ribosomal protein S16~SPTR: 30S ribosomal protein S16%3B~TIGRFAM: Ribosomal protein S16~IMG reference gene:2504919783~PFAM: Ribosomal protein S16~TIGRFAM: ribosomal protein S16 gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0902 Trebr_0903 Trebr_0903 Trebr_0903 1104765 1104998 + UPF0109 protein COGs: COG1837 RNA-binding protein (contains KH domain)~HAMAP: Uncharacterised protein family UPF0109%2C bacterial~InterPro IPR020627~KEGG: tde:TDE0882 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919784 gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0903 Trebr_0904 Trebr_0904 Trebr_0904 1104998 1105585 + Ribosome maturation factor rimM COGs: COG0806 RimM protein required for 16S rRNA processing~HAMAP: 16S rRNA processing protein RimM~InterPro IPR011961:IPR002676:IPR007903~KEGG: sta:STHERM_c10550 16S rRNA processing protein RimM~PFAM: RimM protein%3B PRC-barrel~SPTR: 16S rRNA processing protein RimM%3B~TIGRFAM: 16S rRNA processing protein RimM~IMG reference gene:2504919785~PFAM: PRC-barrel domain%3B RimM N-terminal domain~TIGRFAM: 16S rRNA processing protein RimM gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0904 Trebr_0905 Trebr_0905 Trebr_0905 1105592 1106386 + tRNA (guanine-N(1)-)-methyltransferase COGs: COG0336 tRNA-(guanine-N1)-methyltransferase~HAMAP: tRNA (guanine-N1-)-methyltransferase%2C bacteria~InterPro IPR002649:IPR016009~KEGG: tde:TDE0884 tRNA (guanine-N(1)-)-methyltransferase~PFAM: tRNA (guanine-N1-)-methyltransferase~PRIAM: tRNA (guanine-N(1)-)-methyltransferase~SPTR: tRNA (guanine-N(1)-)-methyltransferase%3B~TIGRFAM: tRNA (guanine-N1-)-methyltransferase%2C bacteria~IMG reference gene:2504919786~PFAM: tRNA (Guanine-1)-methyltransferase~TIGRFAM: tRNA (guanine-N1)-methyltransferase gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0905 Trebr_0906 Trebr_0906 Trebr_0906 1106399 1106770 + 50S ribosomal protein L19 COGs: COG0335 Ribosomal protein L19~HAMAP: Ribosomal protein L19~InterPro IPR001857~KEGG: tde:TDE0885 50S ribosomal protein L19~PFAM: Ribosomal protein L19~SPTR: 50S ribosomal protein L19%3B~TIGRFAM: Ribosomal protein L19~IMG reference gene:2504919787~PFAM: Ribosomal protein L19~TIGRFAM: ribosomal protein L19%2C bacterial type gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0906 Trebr_0907 Trebr_0907 Trebr_0907 1106797 1107942 + hypothetical protein KEGG: tde:TDE0886 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919788 gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0907 Trebr_0908 Trebr_0908 Trebr_0908 1107945 1108241 + FlhB domain protein COGs: COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB~KEGG: mta:Moth_1003 flagellar biosynthesis~SPTR: Flagellar biosynthesis%3B~IMG reference gene:2504919789~PFAM: FlhB HrpN YscU SpaS Family gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0908 Trebr_0909 Trebr_0909 Trebr_0909 1108222 1108485 + HD domain-containing protein KEGG: tde:TDE2302 HD domain-containing protein~SPTR: HD domain protein%3B~IMG reference gene:2504919790 gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0909 Trebr_0910 Trebr_0910 Trebr_0910 1108463 1108873 + UPF0102 protein yraN COGs: COG0792 endonuclease distantly related to Holliday junction resolvase~HAMAP: Uncharacterised protein family UPF0102~InterPro IPR003509~KEGG: tpp:TPASS_0913 hypothetical protein~PFAM: Uncharacterised protein family UPF0102~SPTR: HD domain protein%3B~TIGRFAM: Uncharacterised protein family UPF0102~IMG reference gene:2504919791~PFAM: Uncharacterised protein family UPF0102~TIGRFAM: TIGR00252 family protein gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0910 Trebr_0911 Trebr_0911 Trebr_0911 1108870 1109037 + hypothetical protein IMG reference gene:2504919792 gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0911 Trebr_0912 Trebr_0912 Trebr_0912 1109040 1109570 + hypothetical protein KEGG: tde:TDE2305 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919793 gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0912 Trebr_0913 Trebr_0913 Trebr_0913 1109833 1110378 - hypothetical protein IMG reference gene:2504919795 gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0913 Trebr_0914 Trebr_0914 Trebr_0914 1110415 1112214 + hypothetical protein KEGG: ssm:Spirs_2772 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919796 gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0914 Trebr_0915 Trebr_0915 Trebr_0915 1112204 1112785 - hypothetical protein COGs: COG0491 Zn-dependent hydrolase including glyoxylase~KEGG: tde:TDE1229 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919797~PFAM: Metallo-beta-lactamase superfamily gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0915 Trebr_0916 Trebr_0916 Trebr_0916 1112782 1113411 - pentapeptide repeat protein KEGG: ssm:Spirs_2468 pentapeptide repeat protein~SPTR: Pentapeptide repeat protein%3B~IMG reference gene:2504919798 gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0916 Trebr_0917 Trebr_0917 Trebr_0917 1113465 1113746 + hypothetical protein KEGG: sta:STHERM_c17060 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919799 gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0917 Trebr_0918 Trebr_0918 Trebr_0918 1113758 1114606 + Glutamate racemase COGs: COG0796 Glutamate racemase~HAMAP: Glutamate racemase~InterPro IPR004391:IPR015942~KEGG: tde:TDE1448 glutamate racemase%2C putative~PFAM: Asp/Glu/hydantoin racemase~PRIAM: Glutamate racemase~SPTR: Glutamate racemase%3B~TIGRFAM: Glutamate racemase~IMG reference gene:2504919800~PFAM: Asp/Glu/Hydantoin racemase~TIGRFAM: glutamate racemase gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0918 Trebr_0919 Trebr_0919 Trebr_0919 1114665 1115681 - response regulator receiver modulated metal dependent phosphohydrolase COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain~InterPro IPR001789:IPR006674:IPR003607~KEGG: plm:Plim_0679 response regulator receiver~PFAM: Signal transduction response regulator%2C receiver region%3B Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SMART: Signal transduction response regulator%2C receiver region%3B Metal-dependent phosphohydrolase%2C HD region~SPTR: Response regulator receiver modulated metal dependent phosphohydrolase%3B~IMG reference gene:2504919801~PFAM: HD domain%3B Response regulator receiver domain gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0919 Trebr_0920 Trebr_0920 Trebr_0920 1115715 1116914 - isocitrate dehydrogenase%2C NADP-dependent COGs: COG0538 Isocitrate dehydrogenase~InterPro IPR004790:IPR001804~KEGG: afn:Acfer_0606 isocitrate dehydrogenase%2C NADP-dependent~PFAM: Isocitrate/isopropylmalate dehydrogenase~PRIAM: Isocitrate dehydrogenase (NADP(+))~SPTR: Isocitrate dehydrogenase%3B~TIGRFAM: Isocitrate dehydrogenase NADP-dependent%2C eukaryotic~IMG reference gene:2504919802~PFAM: Isocitrate/isopropylmalate dehydrogenase~TIGRFAM: isocitrate dehydrogenase%2C NADP-dependent%2C eukaryotic type gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0920 Trebr_0921 Trebr_0921 Trebr_0921 1117005 1117781 + protein of unknown function DUF1212 COGs: COG2966 conserved hypothetical protein~InterPro IPR010619~KEGG: ccb:Clocel_1800 hypothetical protein~PFAM: Protein of unknown function DUF1212~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919803~PFAM: Protein of unknown function (DUF1212) gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0921 Trebr_0922 Trebr_0922 Trebr_0922 1117768 1118223 + membrane spanning protein COGs: COG3610 conserved hypothetical protein~KEGG: cst:CLOST_1298 membrane spanning protein~SPTR: Membrane spanning protein%3B~IMG reference gene:2504919804 gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0922 Trebr_0923 Trebr_0923 Trebr_0923 1118496 1119359 + lipopolysaccharide biosynthesis protein InterPro IPR003856~KEGG: lipopolysaccharide biosynthesis protein~PFAM: Lipopolysaccharide biosynthesis~SPTR: Lipopolysaccharide biosynthesis protein%3B~IMG reference gene:2504919805~PFAM: Chain length determinant protein gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0923 Trebr_0924 Trebr_0924 Trebr_0924 1119394 1120860 + protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: ssm:Spirs_0715 protein of unknown function DUF214~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919806~PFAM: Predicted permease gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0924 Trebr_0925 Trebr_0925 Trebr_0925 1120862 1122121 + protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: ssm:Spirs_0716 protein of unknown function DUF214~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919807~PFAM: Predicted permease gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0925 Trebr_0926 Trebr_0926 Trebr_0926 1122136 1122906 + hypothetical protein KEGG: ssm:Spirs_0717 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919808 gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0926 Trebr_0927 Trebr_0927 Trebr_0927 1122909 1124048 + hypothetical protein IMG reference gene:2504919809 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0927 Trebr_0928 Trebr_0928 Trebr_0928 1124050 1124748 - Polyamine-transporting ATPase COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: tde:TDE1852 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Polyamine-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504919810~PFAM: ABC transporter gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0928 Trebr_0929 Trebr_0929 Trebr_0929 1124927 1125955 + lipopolysaccharide biosynthesis protein InterPro IPR003856~KEGG: glo:Glov_1511 lipopolysaccharide biosynthesis protein~PFAM: Lipopolysaccharide biosynthesis~SPTR: Chain length determinant protein%3B~IMG reference gene:2504919811~PFAM: Chain length determinant protein gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0929 Trebr_0930 Trebr_0930 Trebr_0930 1125960 1127549 + Soluble ligand binding domain protein InterPro IPR019554~KEGG: sta:STHERM_c15850 polysaccharide biosynthesis protein~PFAM: Soluble ligand binding domain~SPTR: Putative polysaccharide export protein%3B~IMG reference gene:2504919812~PFAM: SLBB domain gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0930 Trebr_0931 Trebr_0931 Trebr_0931 1127699 1128937 + Tyrosyl-tRNA synthetase COGs: COG0162 Tyrosyl-tRNA synthetase~HAMAP: Tyrosyl-tRNA synthetase~InterPro IPR002307:IPR002305~KEGG: tde:TDE0861 tyrosyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ib~PRIAM: Tyrosine--tRNA ligase~SPTR: Tyrosyl-tRNA synthetase%3B~TIGRFAM: Tyrosyl-tRNA synthetase%2C class Ib%2C bacterial/mitochondrial~IMG reference gene:2504919813~PFAM: tRNA synthetases class I (W and Y)~TIGRFAM: tyrosyl-tRNA synthetase gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0931 Trebr_0932 Trebr_0932 Trebr_0932 1128954 1129790 + hypothetical protein KEGG: elm:ELI_3357 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919814~PFAM: Predicted membrane protein (DUF2238) gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0932 Trebr_0933 Trebr_0933 Trebr_0933 1130162 1130356 + hypothetical protein IMG reference gene:2504919815 gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0933 Trebr_0934 Trebr_0934 Trebr_0934 1135817 1137052 + metal dependent phosphohydrolase with GAF sensor COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain~InterPro IPR003018:IPR003607:IPR006674~KEGG: tde:TDE2659 GAF domain/HD domain-containing protein~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain%3B GAF~SMART: Metal-dependent phosphohydrolase%2C HD region%3B GAF~SPTR: GAF domain/HD domain protein%3B~IMG reference gene:2504919820~PFAM: HD domain%3B GAF domain gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0934 Trebr_0935 Trebr_0935 Trebr_0935 1137049 1137516 - UPF0178 protein yaiI COGs: COG1671 conserved hypothetical protein~HAMAP: Protein of unknown function DUF188~InterPro IPR003791~KEGG: tde:TDE2151 hypothetical protein~PFAM: Protein of unknown function DUF188~SPTR: UPF0178 protein TDE_2151%3B~IMG reference gene:2504919821~PFAM: Uncharacterized BCR%2C YaiI/YqxD family COG1671 gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0935 Trebr_0936 Trebr_0936 Trebr_0936 1137520 1137822 - hypothetical protein KEGG: tpp:TPASS_0846 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919822~PFAM: Cell division protein ZapA gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0936 Trebr_0937 Trebr_0937 Trebr_0937 1137866 1138360 - hypothetical protein KEGG: sta:STHERM_c07780 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919823 gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0937 Trebr_0938 Trebr_0938 Trebr_0938 1138364 1138723 - 50S ribosomal protein L20 COGs: COG0292 Ribosomal protein L20~HAMAP: Ribosomal protein L20~InterPro IPR005813~KEGG: tde:TDE2154 50S ribosomal protein L20~PFAM: Ribosomal protein L20~SPTR: 50S ribosomal protein L20%3B~TIGRFAM: Ribosomal protein L20~IMG reference gene:2504919824~PFAM: Ribosomal protein L20~TIGRFAM: ribosomal protein L20 gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0938 Trebr_0939 Trebr_0939 Trebr_0939 1138744 1138944 - 50S ribosomal protein L35 HAMAP: Ribosomal protein L35~InterPro IPR001706~KEGG: tde:TDE2155 50S ribosomal protein L35~PFAM: Ribosomal protein L35~SPTR: 50S ribosomal protein L35%3B~TIGRFAM: Ribosomal protein L35~IMG reference gene:2504919825~PFAM: Ribosomal protein L35~TIGRFAM: ribosomal protein L35 gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0939 Trebr_0940 Trebr_0940 Trebr_0940 1138958 1139479 - Translation initiation factor IF-3 COGs: COG0290 Translation initiation factor 3 (IF-3)~HAMAP: Translation initiation factor IF-3~InterPro IPR001288:IPR019814:IPR019815~KEGG: sta:STHERM_c07810 translation initiation factor IF-3~PFAM: Translation initiation factor 3%2C N-terminal%3B Translation initiation factor 3%2C C-terminal~SPTR: Translation initiation factor IF-3%3B~TIGRFAM: Translation initiation factor 3~manually curated~IMG reference gene:2504919826~PFAM: Translation initiation factor IF-3%2C C-terminal domain%3B Translation initiation factor IF-3%2C N-terminal domain~TIGRFAM: translation initiation factor IF-3 gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0940 Trebr_0941 Trebr_0941 Trebr_0941 1139694 1140386 + hypothetical protein IMG reference gene:2504919827 gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0941 Trebr_0942 Trebr_0942 Trebr_0942 1140512 1141510 - fructose-1%2C6-bisphosphate aldolase%2C class II COGs: COG0191 Fructose/tagatose bisphosphate aldolase~InterPro IPR000771:IPR011289~KEGG: tpp:TPASS_0662 fructose-bisphosphate aldolase~PFAM: Ketose-bisphosphate aldolase%2C class-II~PRIAM: Fructose-bisphosphate aldolase~SPTR: Fructose-1%2C6-bisphosphate aldolase%2C class II%3B~TIGRFAM: Fructose-1%2C6-bisphosphate aldolase%2C class II%3B Ketose-bisphosphate aldolase%2C class-II~IMG reference gene:2504919828~PFAM: Fructose-bisphosphate aldolase class-II~TIGRFAM: ketose-bisphosphate aldolases%3B fructose-1%2C6-bisphosphate aldolase%2C class II%2C various bacterial and amitochondriate protist gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0942 Trebr_0943 Trebr_0943 Trebr_0943 1141683 1142408 + flagellar filament outer layer protein FlaA InterPro IPR006714~KEGG: tde:TDE1408 flagellar filament outer layer protein FlaA%2C putative~PFAM: Flagellar filament outer layer protein FlaA~SPTR: Outer membrane protein%3B~IMG reference gene:2504919829~PFAM: Flagellar filament outer layer protein Flaa gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0943 Trebr_0944 Trebr_0944 Trebr_0944 1142429 1143154 + flagellar filament outer layer protein FlaA InterPro IPR006714~KEGG: tpp:TPASS_0664 flagellar filament outer layer protein~PFAM: Flagellar filament outer layer protein FlaA~SPTR: Flagellar filament outer layer protein%3B~IMG reference gene:2504919830~PFAM: Flagellar filament outer layer protein Flaa gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0944 Trebr_0945 Trebr_0945 Trebr_0945 1143236 1143931 - hypothetical protein KEGG: tpp:TPASS_0665 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919831 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0945 Trebr_0946 Trebr_0946 Trebr_0946 1144078 1144521 + Protein mraZ COGs: COG2001 conserved hypothetical protein~HAMAP: MraZ~InterPro IPR003444:IPR020603~KEGG: tde:TDE1197 cell division protein MraZ~PFAM: MraZ domain~SPTR: Protein MraZ%3B~TIGRFAM: MraZ~IMG reference gene:2504919832~PFAM: MraZ protein~TIGRFAM: mraZ protein gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0946 Trebr_0947 Trebr_0947 Trebr_0947 1144534 1145526 + Ribosomal RNA small subunit methyltransferase H COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis~HAMAP: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~InterPro IPR002903~KEGG: tde:TDE1198 S-adenosyl-methyltransferase MraW~PFAM: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~SPTR: Ribosomal RNA small subunit methyltransferase H%3B~TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~IMG reference gene:2504919833~PFAM: MraW methylase family~TIGRFAM: S-adenosyl-methyltransferase MraW gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0947 Trebr_0948 Trebr_0948 Trebr_0948 1145543 1145839 + cell division protein FtsL%2C putative KEGG: tde:TDE1199 cell division protein FtsL%2C putative~SPTR: Cell division protein FtsL%2C putative%3B~IMG reference gene:2504919834~PFAM: Septum formation initiator~TIGRFAM: cell division protein FtsL gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0948 Trebr_0949 Trebr_0949 Trebr_0949 1145836 1147302 + UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diamin opimelate/D-alanyl-D-alanyl ligase COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase~InterPro IPR005863:IPR000713:IPR013221:IPR004101~KEGG: tde:TDE1200 UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate- -D-alanyl- D-alanyl ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal~PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase~SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase%3B~TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase~IMG reference gene:2504919835~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0949 Trebr_0950 Trebr_0950 Trebr_0950 1147299 1148453 + cell cycle protein COGs: COG0772 Bacterial cell division membrane protein~InterPro IPR001182~KEGG: tde:TDE1201 cell cycle protein FtsW~PFAM: Cell cycle protein~SPTR: Cell division protein FtsW%3B~IMG reference gene:2504919836~PFAM: Cell cycle protein gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0950 Trebr_0951 Trebr_0951 Trebr_0951 1148499 1149329 + Polypeptide-transport-associated domain protein FtsQ-type COGs: COG1589 Cell division septal protein~InterPro IPR013685~KEGG: tde:TDE1202 cell division protein FtsQ%2C putative~PFAM: Polypeptide-transport-associated%2C FtsQ-type~SPTR: Cell division protein FtsQ%2C putative%3B~IMG reference gene:2504919837~PFAM: Cell division protein FtsQ%3B POTRA domain%2C FtsQ-type gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0951 Trebr_0952 Trebr_0952 Trebr_0952 1149438 1150700 + cell division protein FtsA COGs: COG0849 Actin-like ATPase involved in cell division~InterPro IPR020823:IPR003494~KEGG: ssm:Spirs_1551 cell division protein FtsA~PFAM: Cell division protein FtsA domain~SPTR: Cell division protein FtsA%3B~TIGRFAM: Cell division protein family FtsA~IMG reference gene:2504919838~PFAM: Cell division protein FtsA~TIGRFAM: cell division protein FtsA gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0952 Trebr_0953 Trebr_0953 Trebr_0953 1150814 1152133 + cell division protein FtsZ COGs: COG0206 Cell division GTPase~InterPro IPR000158:IPR003008:IPR018316~KEGG: ssm:Spirs_1552 cell division protein FtsZ~PFAM: Tubulin/FtsZ%2C GTPase domain%3B Tubulin/FtsZ%2C 2-layer sandwich domain~SPTR: Cell division protein ftsZ%3B~TIGRFAM: Cell division protein FtsZ%2C N-terminal~IMG reference gene:2504919839~PFAM: Tubulin/FtsZ family%2C GTPase domain%3B FtsZ family%2C C-terminal domain~TIGRFAM: cell division protein FtsZ gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0953 Trebr_0954 Trebr_0954 Trebr_0954 1152139 1153074 + Tyrosine recombinase xerC COGs: COG4974 Site-specific recombinase XerD~HAMAP: Tyrosine recombinase xerC~InterPro IPR004107:IPR002104~KEGG: ssm:Spirs_1553 tyrosine recombinase XerD~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~SPTR: Tyrosine recombinase XerD%3B~manually curated~IMG reference gene:2504919840~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0954 Trebr_0955 Trebr_0955 Trebr_0955 1153148 1153879 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: tde:TDE1206 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504919841 gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0955 Trebr_0956 Trebr_0956 Trebr_0956 1153869 1154858 + DNA protecting protein DprA COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake~InterPro IPR003488~KEGG: tde:TDE1207 DNA processing protein DprA%2C putative~PFAM: DNA recombination-mediator protein A~SPTR: Smf protein%3B~TIGRFAM: DNA recombination-mediator protein A~IMG reference gene:2504919842~PFAM: DNA recombination-mediator protein A~TIGRFAM: DNA protecting protein DprA gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0956 Trebr_0957 Trebr_0957 Trebr_0957 1154878 1157037 + DNA topoisomerase I COGs: COG0550 Topoisomerase IA~InterProIPR005733:IPR006154:IPR003601:IPR003602:IPR 006171:IPR013497:IPR013498~KEGG: tde:TDE1208 DNA topoisomerase I~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain%3B DNA topoisomerase%2C type IA%2C zn finger~PRIAM: DNA topoisomerase~SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain%2C subgroup~SPTR: DNA topoisomerase I%3B~TIGRFAM: DNA topoisomerase I%2C bacterial-type~IMG reference gene:2504919843~PFAM: Toprim domain%3B Topoisomerase DNA binding C4 zinc finger%3B DNA topoisomerase~TIGRFAM: DNA topoisomerase I%2C bacterial gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0957 Trebr_0958 Trebr_0958 Trebr_0958 1157041 1157967 + Tyrosine recombinase xerC COGs: COG4974 Site-specific recombinase XerD~HAMAP: Tyrosine recombinase xerC~InterPro IPR004107:IPR002104~KEGG: tde:TDE1209 phage integrase family site specific recombinase~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~SPTR: Tyrosine recombinase xerC 2%3B~IMG reference gene:2504919844~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0958 Trebr_0959 Trebr_0959 Trebr_0959 1158051 1158590 + ATP-dependent protease hslV COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit~HAMAP: ATP-dependent protease hslV~InterPro IPR001353~KEGG: tde:TDE1210 ATP-dependent protease peptidase subunit~PFAM: Proteasome%2C subunit alpha/beta~SPTR: ATP-dependent protease subunit HslV%3B~TIGRFAM: ATP-dependent protease HslVU%2C peptidase subunit~IMG reference gene:2504919845~PFAM: Proteasome subunit~TIGRFAM: ATP-dependent protease HslVU%2C peptidase subunit gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0959 Trebr_0960 Trebr_0960 Trebr_0960 1158593 1160056 + ATP-dependent hsl protease ATP-binding subunit hslU COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit~HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU~InterPro IPR004491:IPR003593:IPR013093~KEGG: tde:TDE1211 ATP-dependent protease ATP-binding subunit HslU~PFAM: ATPase associated with various cellular activities%2C AAA-2~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent protease ATPase subunit HslU%3B~TIGRFAM: Heat shock protein HslU~IMG reference gene:2504919846~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B AAA domain (dynein-related subfamily)~TIGRFAM: ATP-dependent protease HslVU%2C ATPase subunit gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0960 Trebr_0961 Trebr_0961 Trebr_0961 1160299 1160715 + flagellar basal-body rod protein FlgB COGs: COG1815 Flagellar basal body protein~InterPro IPR006300~KEGG: tde:TDE1212 flagellar basal-body rod protein FlgB~SPTR: Flagellar basal-body rod protein FlgB%3B~TIGRFAM: Flagellar basal-body rod protein FlgB~IMG reference gene:2504919847~TIGRFAM: flagellar basal-body rod protein FlgB gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0961 Trebr_0962 Trebr_0962 Trebr_0962 1160831 1161286 + flagellar basal-body rod protein FlgC COGs: COG1558 Flagellar basal body rod protein~InterPro IPR006299:IPR001444:IPR010930~KEGG: sta:STHERM_c09080 hypothetical protein~PFAM: Protein of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar basal-body rod protein FlgC%3B~TIGRFAM: Flagellar basal-body rod protein FlgC~IMG reference gene:2504919848~PFAM: Domain of unknown function (DUF1078)%3B Flagella basal body rod protein~TIGRFAM: flagellar basal-body rod protein FlgC gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0962 Trebr_0963 Trebr_0963 Trebr_0963 1161361 1161696 + flagellar hook-basal body complex subunit FliE COGs: COG1677 Flagellar hook-basal body protein~InterPro IPR001624~KEGG: tpp:TPASS_0398 flagellar hook-basal body protein FliE~PFAM: Flagellar hook-basal body complex protein FliE~SPTR: Flagellar hook-basal body complex protein fliE%3B~TIGRFAM: Flagellar hook-basal body complex protein FliE~IMG reference gene:2504919849~PFAM: Flagellar hook-basal body complex protein FliE~TIGRFAM: flagellar hook-basal body complex protein FliE gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0963 Trebr_0964 Trebr_0964 Trebr_0964 1161849 1163555 + flagellar M-ring protein FliF COGs: COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein~InterPro IPR000067:IPR006182:IPR013556~KEGG: tpp:TPASS_0399 flagellar MS-ring protein~PFAM: Flagellar M-ring C-terminal%3B Secretory protein YscJ/FliF~SPTR: Flagellar M-ring protein FliF%3B~TIGRFAM: Flagellar FliF M-ring protein~IMG reference gene:2504919850~PFAM: Flagellar M-ring protein C-terminal%3B Secretory protein of YscJ/FliF family~TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0964 Trebr_0965 Trebr_0965 Trebr_0965 1163556 1164623 + flagellar motor switch protein FliG COGs: COG1536 Flagellar motor switch protein~InterPro IPR000090~KEGG: tpp:TPASS_0400 flagellar motor switch protein G~PFAM: Flagellar motor switch protein FliG~SPTR: Flagellar motor switch protein FliG%3B~TIGRFAM: Flagellar motor switch protein FliG~IMG reference gene:2504919851~PFAM: FliG C-terminal domain~TIGRFAM: flagellar motor switch protein FliG gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0965 Trebr_0966 Trebr_0966 Trebr_0966 1164627 1165562 + Flagellar assembly protein FliH/Type III secretion system HrpE COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein~InterPro IPR018035~KEGG: tde:TDE1217 flagellar assembly protein H~PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE~SPTR: Flagellar assembly protein fliH%2C putative%3B~IMG reference gene:2504919852~PFAM: Flagellar assembly protein FliH gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0966 Trebr_0967 Trebr_0967 Trebr_0967 1165581 1166939 + ATPase%2C FliI/YscN family COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase~InterPro IPR005714:IPR003593:IPR004100:IPR000194~KEGG: tde:TDE1218 flagellum-specific ATP synthase FliI~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal~PRIAM: H(+)-transporting two-sector ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Flagellar protein export ATPase FliI%3B~TIGRFAM: ATPase%2C type III secretion system%2C FliI/YscN~IMG reference gene:2504919853~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain~TIGRFAM: ATPase FliI/YscN family gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0967 Trebr_0968 Trebr_0968 Trebr_0968 1166946 1167422 + flagellar export protein FliJ InterPro IPR012823~KEGG: tde:TDE1219 flagellar protein FliJ%2C putative~SPTR: Flagellar protein FliJ%2C putative%3B~TIGRFAM: Flagellar export FliJ~IMG reference gene:2504919854~PFAM: Flagellar FliJ protein~TIGRFAM: flagellar export protein FliJ gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0968 Trebr_0969 Trebr_0969 Trebr_0969 1167419 1169071 - phosphoribulokinase/uridine kinase COGs: COG0572 Uridine kinase~InterPro IPR003593:IPR006083~KEGG: tde:TDE2289 phosphoribulokinase/uridine kinase family protein~PFAM: Phosphoribulokinase/uridine kinase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Phosphoribulokinase/uridine kinase family protein%3B~IMG reference gene:2504919855~PFAM: Phosphoribulokinase / Uridine kinase family gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0969 Trebr_0970 Trebr_0970 Trebr_0970 1169189 1170412 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: mfa:Mfla_0790 1%2C2-diacylglycerol 3-glucosyltransferase~PFAM: Glycosyl transferase%2C group 1~SPTR: 1%2C2-diacylglycerol 3-glucosyltransferase%3B~IMG reference gene:2504919856~PFAM: Glycosyl transferases group 1 gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0970 Trebr_0971 Trebr_0971 Trebr_0971 1170536 1171732 - tRNA sulfurtransferase COGs: COG0301 Thiamine biosynthesis ATP pyrophosphatase~HAMAP: Thiamine biosynthesis protein~InterPro IPR003720:IPR004114:IPR020536~KEGG: tde:TDE2568 thiamine biosynthesis protein ThiI~PFAM: Thiamine biosynthesis protein%2C C-terminal%3B THUMP~SPTR: Probable tRNA sulfurtransferase%3B~TIGRFAM: Thiamine biosynthesis protein~IMG reference gene:2504919857~PFAM: Thiamine biosynthesis protein (ThiI)%3B THUMP domain~TIGRFAM: thiazole biosynthesis/tRNA modification protein ThiI gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0971 Trebr_0972 Trebr_0972 Trebr_0972 1171894 1173855 + Long-chain-fatty-acid--CoA ligase.%2C 4-coumarate--CoA ligase COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming)~InterPro IPR000873~KEGG: sta:STHERM_c08540 hypothetical protein~PFAM: AMP-dependent synthetase/ligase~PRIAM: Long-chain-fatty-acid--CoA ligase.%2C 4-coumarate--CoA ligase~SPTR: AMP-binding enzyme family protein%3B~IMG reference gene:2504919858~PFAM: AMP-binding enzyme gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0972 Trebr_0973 Trebr_0973 Trebr_0973 1173888 1175048 + hypothetical protein KEGG: tde:TDE1946 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919859 gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0973 Trebr_0974 Trebr_0974 Trebr_0974 1175035 1175427 - VanZ family protein InterPro IPR006976~KEGG: fsu:Fisuc_0295 VanZ family protein~PFAM: VanZ like protein~SPTR: VanZ like protein%3B~IMG reference gene:2504919860~PFAM: VanZ like family gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0974 Trebr_0975 Trebr_0975 Trebr_0975 1175411 1176448 - Glycosyl transferase%2C family 4%2C conserved region-containing protein COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase~InterPro IPR018481~KEGG: tde:TDE2670 glycosyl transferase%2C group 4 family protein~PFAM: Glycosyl transferase%2C family 4%2C conserved region~SPTR: Glycosyl transferase%2C group 4 family protein%3B~IMG reference gene:2504919861~PFAM: Glycosyl transferase family 4 gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0975 Trebr_0976 Trebr_0976 Trebr_0976 1176648 1177016 + iron (metal) dependent repressor%2C DtxR family COGs: COG1321 Mn-dependent transcriptional regulator protein~InterPro IPR001367~KEGG: cac:CA_C1469 iron-dependent transcription repressor~PFAM: Iron dependent repressor~SMART: Iron dependent repressor~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919862~PFAM: Iron dependent repressor%2C metal binding and dimerisation domain%3B Iron dependent repressor%2C N-terminal DNA binding domain gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0976 Trebr_0977 Trebr_0977 Trebr_0977 1177043 1177675 + multiple antibiotic resistance (MarC)-related protein COGs: COG2095 Multiple antibiotic transporter~InterPro IPR002771~KEGG: cvi:CV_1455 multiple antibiotic resistance protein MarC~PFAM: Multiple antibiotic resistance (MarC)-related~SPTR: Putative membrane protein%3B~TIGRFAM: Multiple antibiotic resistance (MarC)-related~IMG reference gene:2504919863~PFAM: MarC family integral membrane protein~TIGRFAM: membrane protein%2C MarC family gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0977 Trebr_0978 Trebr_0978 Trebr_0978 1177675 1179114 + Argininosuccinate lyase COGs: COG0165 Argininosuccinate lyase~HAMAP: Argininosuccinate lyase~InterPro IPR009049:IPR000362~KEGG: hmo:HM1_1460 argininosuccinate lyase~PFAM: Fumarate lyase~PRIAM: Argininosuccinate lyase~SPTR: Argininosuccinate lyase%3B~TIGRFAM: Argininosuccinate lyase~IMG reference gene:2504919864~PFAM: Lyase~TIGRFAM: argininosuccinate lyase gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0978 Trebr_0979 Trebr_0979 Trebr_0979 1179380 1180189 + ABC-type transporter%2C periplasmic subunit family 3 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain~InterPro IPR001638~KEGG: tjr:TherJR_0419 extracellular solute-binding protein family 3~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3~SPTR: Extracellular solute-binding protein family 3%3B~IMG reference gene:2504919865~PFAM: Bacterial extracellular solute-binding proteins%2C family 3 gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0979 Trebr_0980 Trebr_0980 Trebr_0980 1180208 1180843 + polar amino acid ABC transporter%2C inner membrane subunit COGs: COG0765 ABC-type amino acid transport system permease component~InterPro IPR010065:IPR000515~KEGG: cce:Ccel_0886 polar amino acid ABC transporter%2C inner membrane subunit~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Polar amino acid ABC transporter%2C inner membrane subunit%3B~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine~IMG reference gene:2504919866~PFAM: Binding-protein-dependent transport system inner membrane component~TIGRFAM: amine acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine family gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0980 Trebr_0981 Trebr_0981 Trebr_0981 1180858 1181604 + Phosphonate-transporting ATPase COGs: COG1126 ABC-type polar amino acid transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: eel:EUBELI_01396 polar amino acid transport system ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Amino acid ABC transporter ATP-binding protein%2C PAAT family (TC 3.A.1.3.-)%3B~IMG reference gene:2504919867~PFAM: ABC transporter gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0981 Trebr_0982 Trebr_0982 Trebr_0982 1181710 1182669 + PhoH family protein COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase~InterPro IPR003714~KEGG: sta:STHERM_c09740 PhoH-like protein~PFAM: PhoH-like protein~SPTR: PhoH family protein%3B~manually curated~IMG reference gene:2504919868~PFAM: PhoH-like protein gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0982 Trebr_0983 Trebr_0983 Trebr_0983 1182641 1184347 + 7TM receptor with intracellular metal dependent phosphohydrolase COGs: COG1480 membrane-associated HD superfamily hydrolase~InterPro IPR006675:IPR003607:IPR011621:IPR006674~KEGG: tde:TDE1241 HD domain-containing protein~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain%3B Metal-dependent phosphohydrolase%2C 7TM intracellular region~SMART: Metal-dependent phosphohydrolase%2C HD region~SPTR: HD domain protein%3B~TIGRFAM: HDIG~IMG reference gene:2504919869~PFAM: HD domain%3B 7TM receptor with intracellular HD hydrolase~TIGRFAM: uncharacterized domain HDIG gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0983 Trebr_0984 Trebr_0984 Trebr_0984 1184328 1184816 + metalloprotease ybeY COGs: COG0319 metal-dependent hydrolase~HAMAP: Uncharacterised protein family UPF0054~InterPro IPR002036~KEGG: tde:TDE1242 putative metalloprotease~PFAM: Uncharacterised protein family UPF0054~SPTR: Probable rRNA maturation factor%3B~TIGRFAM: Uncharacterised protein family UPF0054~IMG reference gene:2504919870~PFAM: Uncharacterized protein family UPF0054~TIGRFAM: metalloprotein%2C YbeY/UPF0054 family gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0984 Trebr_0985 Trebr_0985 Trebr_0985 1184830 1185621 + transporter-associated region COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR005170~KEGG: tde:TDE1243 hemolysin C~PFAM: Transporter-associated region%3B Cystathionine beta-synthase%2C core~SPTR: Hemolysin C%3B~IMG reference gene:2504919871~PFAM: CBS domain%3B Transporter associated domain gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0985 Trebr_0986 Trebr_0986 Trebr_0986 1185618 1187738 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR001440~KEGG: tde:TDE1244 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504919872 gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0986 Trebr_0987 Trebr_0987 Trebr_0987 1187771 1188673 - hypothetical protein KEGG: tde:TDE1245 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919873 gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0987 Trebr_0988 Trebr_0988 Trebr_0988 1188751 1189038 + hypothetical protein KEGG: tde:TDE2047 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919874 gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0988 Trebr_0989 Trebr_0989 Trebr_0989 1189075 1190212 + Peptide chain release factor 2 KEGG: bpm:BURPS1710b_3602 hypothetical protein~SPTR: Peptide chain release factor 2%3B~IMG reference gene:2504919875~PFAM: PCRF domain%3B RF-1 domain~TIGRFAM: peptide chain release factor 2 gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0989 Trebr_0990 Trebr_0990 Trebr_0990 1190209 1191825 + hypothetical protein KEGG: tde:TDE2044 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504919876 gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0990 Trebr_0991 Trebr_0991 Trebr_0991 1191827 1192705 + signal recognition particle-docking protein FtsY COGs: COG0552 Signal recognition particle GTPase~InterPro IPR004390:IPR003593:IPR013822:IPR000897~KEGG: tde:TDE2043 signal recognition particle-docking protein FtsY~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle~SMART: ATPase%2C AAA+ type%2C core~SPTR: Signal recognition particle-docking protein FtsY%3B~TIGRFAM: Cell division transporter substrate-binding protein FtsY~IMG reference gene:2504919877~PFAM: SRP54-type protein%2C GTPase domain~TIGRFAM: signal recognition particle-docking protein FtsY gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0991 Trebr_0992 Trebr_0992 Trebr_0992 1192705 1193499 + hypothetical protein IMG reference gene:2504919878 gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0992 Trebr_0993 Trebr_0993 Trebr_0993 1193496 1194776 + protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: tde:TDE2041 lipoprotein releasing system%2C permease protein%2C putative~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Putative lipoprotein releasing system%2C permease protein%3B~IMG reference gene:2504919879~PFAM: Predicted permease gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0993 Trebr_0994 Trebr_0994 Trebr_0994 1194769 1195488 + Phosphonate-transporting ATPase COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: tde:TDE2040 lipoprotein releasing system%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Lipoprotein-releasing system ATP-binding protein LolD%3B~IMG reference gene:2504919880~PFAM: ABC transporter gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0994 Trebr_0995 Trebr_0995 Trebr_0995 1195485 1196819 + protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: tde:TDE2039 lipoprotein releasing system%2C permease protein%2C putative~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Lipoprotein releasing system%2C permease protein%2C putative%3B~IMG reference gene:2504919881~PFAM: Predicted permease gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0995 Trebr_0996 Trebr_0996 Trebr_0996 1196822 1197367 + UvrB/UvrC protein COGs: COG3880 Uncharacterized protein with conserved CXXC pairs~InterPro IPR001943~KEGG: ssm:Spirs_1926 UvrB/UvrC protein~PFAM: UvrB/UvrC protein~SPTR: UvrB/UvrC protein%3B~IMG reference gene:2504919882~PFAM: UvrB/uvrC motif gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0996 Trebr_0997 Trebr_0997 Trebr_0997 1197364 1198512 + ATP:guanido phosphotransferase COGs: COG3869 Arginine kinase~InterPro IPR000749~KEGG: tde:TDE2037 ATP:guanido phosphotransferase domain-containing protein~PFAM: ATP:guanido phosphotransferase~SPTR: Putative ATP:guanido phosphotransferase domain protein%3B~IMG reference gene:2504919883~PFAM: ATP:guanido phosphotransferase%2C C-terminal catalytic domain gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0997 Trebr_0998 Trebr_0998 Trebr_0998 1198549 1201131 + ATPase AAA-2 domain protein COGs: COG0542 ATPase with chaperone activity ATP-binding subunit~InterProIPR003593:IPR004176:IPR003959:IPR001943:IPR 013093:IPR019489~KEGG: ssm:Spirs_1928 ATPase AAA-2 domain protein~PFAM: ATPase associated with various cellular activities%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B UvrB/UvrC protein%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATPase AAA-2 domain protein%3B~IMG reference gene:2504919884~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B Clp amino terminal domain%3B ATPase family associated with various cellular activities (AAA)%3B UvrB/uvrC motif gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0998 Trebr_0999 Trebr_0999 Trebr_0999 1201241 1204497 - pseudogene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_0999 Trebr_1000 Trebr_1000 Trebr_1000 1204501 1205544 - efflux transporter%2C RND family%2C MFP subunit COGs: COG0845 Membrane-fusion protein~InterPro IPR006143:IPR000089~KEGG: ssm:Spirs_0899 efflux transporter%2C RND family%2C MFP subunit~PFAM: Biotin/lipoyl attachment~SPTR: Efflux transporter%2C RND family%2C MFP subunit%3B~TIGRFAM: Secretion protein HlyD~IMG reference gene:2504919886~PFAM: Biotin-requiring enzyme~TIGRFAM: RND family efflux transporter%2C MFP subunit gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1000 Trebr_1001 Trebr_1001 Trebr_1001 1205557 1206870 - outer membrane efflux protein COGs: COG1538 Outer membrane protein~InterPro IPR003423~KEGG: ssm:Spirs_0898 outer membrane efflux protein~PFAM: Outer membrane efflux protein~SPTR: Outer membrane efflux protein%3B~IMG reference gene:2504919887~PFAM: Outer membrane efflux protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1001 Trebr_1002 Trebr_1002 Trebr_1002 1207036 1207752 + two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: ssm:Spirs_3809 two component transcriptional regulator%2C winged helix family~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region~SPTR: Two component transcriptional regulator%2C winged helix family%3B~IMG reference gene:2504919888~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1002 Trebr_1003 Trebr_1003 Trebr_1003 1207749 1209170 + integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003660:IPR003661:IPR003594~KEGG: ssm:Spirs_3808 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504919889~PFAM: HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1003 Trebr_1004 Trebr_1004 Trebr_1004 1209183 1209773 + NAD(P)H dehydrogenase (quinone) COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B)~InterPro IPR003680~KEGG: mmg:MTBMA_c07320 NADH dehydrogenase~PFAM: Flavodoxin-like fold~SPTR: Predicted NADH dehydrogenase%3B~IMG reference gene:2504919890~PFAM: Flavodoxin-like fold gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1004 Trebr_1006 Trebr_1006 Trebr_1006 1211351 1212016 + hypothetical protein IMG reference gene:2504919892 gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1006 Trebr_1007 Trebr_1007 Trebr_1007 1212195 1213436 + transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: wch:wcw_0483 transposase~PFAM: Transposase%2C mutator type~SPTR: Transposase%3B~IMG reference gene:2504919893~PFAM: Transposase%2C Mutator family gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1007 Trebr_1008 Trebr_1008 Trebr_1008 1213964 1214560 - transcriptional regulator%2C TetR family COGs: COG1309 Transcriptional regulator~InterPro IPR001647~KEGG: ckr:CKR_0229 hypothetical protein~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919894~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1008 Trebr_1009 Trebr_1009 Trebr_1009 1214697 1215221 + nitroreductase COGs: COG0778 Nitroreductase~InterPro IPR000415~KEGG: ckr:CKR_0228 hypothetical protein~PFAM: Nitroreductase-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919895~PFAM: Nitroreductase family gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1009 Trebr_1010 Trebr_1010 Trebr_1010 1215252 1215674 + protein of unknown function DUF523 COGs: COG1683 conserved hypothetical protein~InterPro IPR007553~KEGG: ckr:CKR_0227 hypothetical protein~PFAM: Protein of unknown function DUF523~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919896~PFAM: Protein of unknown function (DUF523) gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1010 Trebr_1011 Trebr_1011 Trebr_1011 1215757 1216653 - transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060:IPR003313:IPR000005~KEGG: ckr:CKR_0226 hypothetical protein~PFAM: Helix-turn-helix%2C AraC type%3B AraC protein%2C arabinose-binding/dimerisation~SMART: Helix-turn-helix%2C AraC domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919897~PFAM: AraC-like ligand binding domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1011 Trebr_1012 Trebr_1012 Trebr_1012 1216765 1217925 + major facilitator superfamily MFS_1 COGs: COG0738 Fucose permease~InterPro IPR011701~KEGG: ckr:CKR_0225 hypothetical protein~PFAM: Major facilitator superfamily MFS-1~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919898~PFAM: Major Facilitator Superfamily gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1012 Trebr_1013 Trebr_1013 Trebr_1013 1217939 1218772 + histidinol phosphate phosphatase HisJ family COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family~InterPro IPR010140:IPR004013~KEGG: ckr:CKR_0224 hypothetical protein~PFAM: PHP%2C C-terminal~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Histidinol phosphate phosphatase%2C HisJ~IMG reference gene:2504919899~PFAM: PHP domain~TIGRFAM: histidinol phosphate phosphatase HisJ family gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1013 Trebr_1014 Trebr_1014 Trebr_1014 1218826 1219689 + adenylyltransferase InterPro IPR007530~KEGG: ckr:CKR_0223 hypothetical protein~PFAM: Streptomycin adenylyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919900~PFAM: Streptomycin adenylyltransferase gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1014 Trebr_1015 Trebr_1015 Trebr_1015 1219930 1220118 + hypothetical protein KEGG: ckl:CKL_0265 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919901 gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1015 Trebr_1016 Trebr_1016 Trebr_1016 1220606 1221025 + Sigma-70 region 4 type 2 InterPro IPR013249~KEGG: ckl:CKL_0264 hypothetical protein~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2~SPTR: Conserved protein%3B~IMG reference gene:2504919902~PFAM: Sigma-70%2C region 4~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1016 Trebr_1017 Trebr_1017 Trebr_1017 1221481 1221681 + hypothetical protein KEGG: ckl:CKL_0263 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919903 gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1017 Trebr_1018 Trebr_1018 Trebr_1018 1221823 1222086 + hypothetical protein KEGG: ckr:CKR_0221 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919904 gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1018 Trebr_1019 Trebr_1019 Trebr_1019 1222227 1223906 + Recombinase COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119:IPR011109~KEGG: ckr:CKR_0220 hypothetical protein~PFAM: Recombinase%3B Resolvase%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919905~PFAM: Recombinase%3B Resolvase%2C N terminal domain gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1019 Trebr_1020 Trebr_1020 Trebr_1020 1224009 1224314 + SH3 type 3 domain protein InterPro IPR003646:IPR013247~KEGG: afn:Acfer_1660 SH3 type 3 domain protein~PFAM: SH3%2C type 3~SMART: Bacterial SH3-like region~IMG reference gene:2504919906~PFAM: Bacterial SH3 domain gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1020 Trebr_1021 Trebr_1021 Trebr_1021 1224503 1225444 + hypothetical protein KEGG: ssm:Spirs_1767 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919907 gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1021 Trebr_1022 Trebr_1022 Trebr_1022 1225831 1226742 + Conserved hypothetical protein CHP01784 InterPro IPR010106~KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP01784~IMG reference gene:2504919908~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1022 Trebr_1023 Trebr_1023 Trebr_1023 1226781 1227059 - pseudogene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1023 Trebr_1024 Trebr_1024 Trebr_1024 1227567 1229054 + Propionyl-CoA carboxylase COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta)~InterPro IPR000022~KEGG: tte:TTE1220 acetyl-CoA carboxylase alpha subunit~PFAM: Carboxyl transferase~PRIAM: Propionyl-CoA carboxylase~SPTR: Acetyl-CoA carboxylase alpha subunit%3B~IMG reference gene:2504919910~PFAM: Carboxyl transferase domain gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1024 Trebr_1025 Trebr_1025 Trebr_1025 1229172 1229636 + hypothetical protein KEGG: ssm:Spirs_1526 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919911 gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1025 Trebr_1026 Trebr_1026 Trebr_1026 1229697 1230218 - flavodoxin/nitric oxide synthase InterPro IPR008254~KEGG: ere:EUBREC_3048 hypothetical protein~PFAM: Flavodoxin/nitric oxide synthase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919912 gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1026 Trebr_1027 Trebr_1027 Trebr_1027 1230220 1232046 - hypothetical protein IMG reference gene:2504919913 gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1027 Trebr_1028 Trebr_1028 Trebr_1028 1232046 1233029 - HflC protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR010200:IPR001107~KEGG: ssm:Spirs_2891 HflC protein~PFAM: Band 7 protein~SMART: Band 7 protein~SPTR: HflC protein%3B~TIGRFAM: HflC~IMG reference gene:2504919914~PFAM: SPFH domain / Band 7 family~TIGRFAM: HflC protein gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1028 Trebr_1029 Trebr_1029 Trebr_1029 1233029 1233994 - HflK protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR010201:IPR001107~KEGG: sta:STHERM_c16310 hypothetical protein~PFAM: Band 7 protein~SMART: Band 7 protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: HflK~IMG reference gene:2504919915~PFAM: SPFH domain / Band 7 family~TIGRFAM: HflK protein gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1029 Trebr_1030 Trebr_1030 Trebr_1030 1234268 1234888 + transcriptional regulator%2C TetR family COGs: COG1309 Transcriptional regulator~InterPro IPR001647~KEGG: ssm:Spirs_3496 transcriptional regulator%2C TetR family~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%2C TetR family%3B~IMG reference gene:2504919916~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1030 Trebr_1031 Trebr_1031 Trebr_1031 1235039 1236874 + Xenobiotic-transporting ATPase COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR003593:IPR001140:IPR003439~KEGG: elm:ELI_0926 ABC transporter~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919917~PFAM: ABC transporter%3B ABC transporter transmembrane region gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1031 Trebr_1032 Trebr_1032 Trebr_1032 1236874 1238622 + Xenobiotic-transporting ATPase COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR003593:IPR003439~KEGG: elm:ELI_0927 ABC transporter~PFAM: ABC transporter-like~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919918~PFAM: ABC transporter%3B ABC transporter transmembrane region gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1032 Trebr_1033 Trebr_1033 Trebr_1033 1238707 1240056 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: ele:Elen_0305 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Putative efflux protein%2C MATE family%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504919919~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1033 Trebr_1034 Trebr_1034 Trebr_1034 1240135 1240446 + transcriptional regulator%2C MerR family COGs: COG0789 transcriptional regulator protein~InterPro IPR000551~KEGG: bpb:bpr_I2825 MerR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR~SPTR: Transcriptional regulator MerR family%3B~IMG reference gene:2504919920~PFAM: MerR family regulatory protein gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1034 Trebr_1035 Trebr_1035 Trebr_1035 1240643 1242472 - Spore coat protein CotH InterPro IPR003961:IPR014867~KEGG: fbc:FB2170_12266 hypothetical protein~PFAM: Spore coat protein CotH%3B Fibronectin%2C type III~SPTR: CotH protein%3B~IMG reference gene:2504919921~PFAM: CotH protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1035 Trebr_1036 Trebr_1036 Trebr_1036 1242580 1242912 + helix-turn-helix domain protein InterPro IPR001387~KEGG: ssm:Spirs_2166 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504919922~PFAM: Helix-turn-helix gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1036 Trebr_1037 Trebr_1037 Trebr_1037 1242931 1243554 - pseudogene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1037 Trebr_1038 Trebr_1038 Trebr_1038 1243642 1244403 + o-pyrocatechuate decarboxylase COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold~InterPro IPR006992~KEGG: mbn:Mboo_1036 amidohydrolase 2~PFAM: Amidohydrolase 2~PRIAM: o-pyrocatechuate decarboxylase~SPTR: Amidohydrolase family protein%3B~IMG reference gene:2504919924~PFAM: Amidohydrolase gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1038 Trebr_1039 Trebr_1039 Trebr_1039 1244664 1245752 + Microsomal epoxide hydrolase COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily)~InterPro IPR010497:IPR000073~KEGG: bcl:ABC1387 epoxide hydrolase 1~PFAM: Epoxide hydrolase%2C N-terminal%3B Alpha/beta hydrolase fold-1~PRIAM: Microsomal epoxide hydrolase~SPTR: Epoxide hydrolase 1%3B~IMG reference gene:2504919925~PFAM: alpha/beta hydrolase fold%3B Epoxide hydrolase N terminus gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1039 Trebr_1040 Trebr_1040 Trebr_1040 1245820 1246383 + protein of unknown function UPF0157 COGs: COG2320 conserved hypothetical protein~InterPro IPR007344~KEGG: cdf:CD0609 hypothetical protein~PFAM: Uncharacterised protein family UPF0157~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919926~PFAM: Uncharacterised protein family (UPF0157) gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1040 Trebr_1041 Trebr_1041 Trebr_1041 1246410 1246949 + protein of unknown function DUF1697 COGs: COG3797 conserved hypothetical protein~InterPro IPR012545~KEGG: csh:Closa_3141 protein of unknown function DUF1697~PFAM: Protein of unknown function DUF1697~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919927~PFAM: Protein of unknown function (DUF1697) gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1041 Trebr_1042 Trebr_1042 Trebr_1042 1247114 1247713 - protein of unknown function DUF975 COGs: COG5523 integral membrane protein~InterPro IPR010380~KEGG: pjd:Pjdr2_0697 protein of unknown function DUF975~PFAM: Protein of unknown function DUF975~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919928~PFAM: Protein of unknown function (DUF975) gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1042 Trebr_1043 Trebr_1043 Trebr_1043 1248454 1248777 + helix-turn-helix domain protein InterPro IPR001387~KEGG: pjd:Pjdr2_4489 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504919929~PFAM: Helix-turn-helix gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1043 Trebr_1044 Trebr_1044 Trebr_1044 1248908 1249534 - ThiJ/PfpI domain-containing protein COGs: COG0693 Putative intracellular protease/amidase~InterPro IPR002818~KEGG: mla:Mlab_0808 hypothetical protein~PFAM: ThiJ/PfpI~SPTR: ThiJ/PfpI domain protein%3B~IMG reference gene:2504919930~PFAM: DJ-1/PfpI family gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1044 Trebr_1045 Trebr_1045 Trebr_1045 1249770 1250702 + hypothetical protein COGs: COG2378 transcriptional regulator protein~InterPro IPR013196~KEGG: elm:ELI_3261 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919931~PFAM: HTH domain gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1045 Trebr_1046 Trebr_1046 Trebr_1046 1250737 1251299 - pseudogene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1046 Trebr_1047 Trebr_1047 Trebr_1047 1251451 1252764 + hypothetical protein COGs: COG1373 ATPase (AAA+ superfamily)~KEGG: swo:Swol_0027 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919933~PFAM: Archaeal ATPase gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1047 Trebr_1048 Trebr_1048 Trebr_1048 1253400 1254050 + Methyltransferase type 11 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis~InterPro IPR013216~KEGG: eel:EUBELI_20156 ubiquinone/menaquinone biosynthesis methyltransferase~PFAM: Methyltransferase type 11~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919934~PFAM: Methyltransferase domain gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1048 Trebr_1049 Trebr_1049 Trebr_1049 1254308 1254916 + metal dependent phosphohydrolase COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain~InterPro IPR003607:IPR006674~KEGG: csh:Closa_0967 metal dependent phosphohydrolase~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SMART: Metal-dependent phosphohydrolase%2C HD region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919935~PFAM: HD domain gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1049 Trebr_1050 Trebr_1050 Trebr_1050 1254989 1255402 + hemerythrin-like metal-binding protein COGs: COG2703 Hemerythrin~InterPro IPR012827:IPR012312~KEGG: ddf:DEFDS_1545 methyl-accepting chemotaxis protein~PFAM: Haemerythrin/HHE cation-binding motif~SPTR: Methyl-accepting chemotaxis protein%3B~TIGRFAM: Haemerythrin-like%2C metal-binding~IMG reference gene:2504919936~PFAM: Hemerythrin HHE cation binding domain~TIGRFAM: hemerythrin-like metal-binding domain gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1050 Trebr_1051 Trebr_1051 Trebr_1051 1255439 1256269 + ATPase-like%2C ParA/MinD COGs: COG0489 ATPase involved in chromosome partitioning~InterPro IPR019591~KEGG: dhd:Dhaf_1985 nucleotide-binding protein~PFAM: ATPase-like%2C ParA/MinD~SPTR: Nucleotide-binding protein%3B~IMG reference gene:2504919937~PFAM: ParA/MinD ATPase like gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1051 Trebr_1052 Trebr_1052 Trebr_1052 1256266 1256796 + C_GCAxxG_C_C family protein InterPro IPR010181~KEGG: cce:Ccel_0233 C_GCAxxG_C_C family protein~PFAM: CGCAxxGCC motif~SPTR: C_GCAxxG_C_C family protein%3B~TIGRFAM: CGCAxxGCC motif~IMG reference gene:2504919938~PFAM: Putative redox-active protein (C_GCAxxG_C_C)~TIGRFAM: C_GCAxxG_C_C family probable redox protein gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1052 Trebr_1053 Trebr_1053 Trebr_1053 1256863 1257900 - dihydrouridine synthase DuS COGs: COG0042 tRNA-dihydrouridine synthase~InterPro IPR001269~KEGG: tde:TDE0122 dihydrouridine synthase%2C putative~PFAM: tRNA-dihydrouridine synthase~SPTR: tRNA-dihydrouridine synthase%3B~IMG reference gene:2504919939~PFAM: Dihydrouridine synthase (Dus) gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1053 Trebr_1054 Trebr_1054 Trebr_1054 1258003 1259460 + SSS sodium solute transporter superfamily COGs: COG0591 Na+/proline symporter~InterPro IPR019900:IPR001734~KEGG: pth:PTH_2848 Na+/panthothenate symporter~PFAM: Sodium/solute symporter~SPTR: Na+/panthothenate symporter%3B~TIGRFAM: Sodium/solute symporter%2C subgroup~IMG reference gene:2504919940~PFAM: Sodium:solute symporter family~TIGRFAM: transporter%2C SSS family gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1054 Trebr_1055 Trebr_1055 Trebr_1055 1259535 1259873 - t-RNA-binding domain-containing protein COGs: COG0073 EMAP domain~InterPro IPR002547~KEGG: aha:AHA_0208 hypothetical protein~PFAM: tRNA-binding region~SPTR: Methionyl-tRNA synthetase%3B~IMG reference gene:2504919941~PFAM: Putative tRNA binding domain~TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1055 Trebr_1056 Trebr_1056 Trebr_1056 1260220 1261509 + O-acetylhomoserine/O-acetylserine sulfhydrylase COGs: COG2873 O-acetylhomoserine sulfhydrylase~InterPro IPR006235:IPR000277~KEGG: amu:Amuc_2013 O-acetylhomoserine/O-acetylserine sulfhydrylase~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme~PRIAM: Cysteine synthase~SPTR: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase%3B~TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase~IMG reference gene:2504919942~PFAM: Cys/Met metabolism PLP-dependent enzyme~TIGRFAM: OAH/OAS sulfhydrylase gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1056 Trebr_1057 Trebr_1057 Trebr_1057 1261706 1262383 + protein of unknown function UPF0153 InterPro IPR005358~KEGG: tde:TDE0847 hypothetical protein~PFAM: Uncharacterised protein family UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919943~PFAM: Uncharacterised protein family (UPF0153) gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1057 Trebr_1058 Trebr_1058 Trebr_1058 1262397 1263269 + endonuclease 4 COGs: COG0648 Endonuclease IV~HAMAP: Endodeoxyribonuclease IV~InterPro IPR001719:IPR012307~KEGG: dba:Dbac_2857 apurinic endonuclease Apn1~PFAM: Xylose isomerase%2C TIM barrel domain~PRIAM: Deoxyribonuclease IV (phage-T(4)-induced)~SMART: Endodeoxyribonuclease IV~SPTR: Probable endonuclease 4%3B~TIGRFAM: Endodeoxyribonuclease IV~IMG reference gene:2504919944~PFAM: Xylose isomerase-like TIM barrel~TIGRFAM: apurinic endonuclease (APN1) gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1058 Trebr_1059 Trebr_1059 Trebr_1059 1263340 1263789 - hypothetical protein IMG reference gene:2504919945 gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1059 Trebr_1060 Trebr_1060 Trebr_1060 1263779 1264336 - hypothetical protein KEGG: mgl:MGL_0687 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919946 gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1060 Trebr_1061 Trebr_1061 Trebr_1061 1264633 1265823 - hypothetical protein KEGG: tde:TDE2429 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919947 gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1061 Trebr_1062 Trebr_1062 Trebr_1062 1265820 1266971 - secretion protein HlyD family protein InterPro IPR006143~KEGG: tde:TDE0426 bacteriocin ABC transporter%2C bacteriocin-binding protein%2C putative~PFAM: Secretion protein HlyD~SPTR: Bacteriocin ABC transporter%2C bacteriocin-binding protein%2C putative%3B~IMG reference gene:2504919948~PFAM: HlyD family secretion protein gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1062 Trebr_1063 Trebr_1063 Trebr_1063 1266973 1269120 - ABC-type bacteriocin transporter COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain~InterProIPR005897:IPR003593:IPR005074:IPR001140:IPR 003439~KEGG: tde:TDE0425 bacteriocin ABC transporter%2C ATP-binding/permease%2C putative~PFAM: ABC transporter-like%3B Peptidase C39%2C bacteriocin processing%3B ABC transporter%2C transmembrane region~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Bacteriocin ABC transporter%2C ATP-binding/permease%2C putative%3B~TIGRFAM: Peptidase C39%2C ABC-type bacteriocin transporter~IMG reference gene:2504919949~PFAM: Peptidase C39 family%3B ABC transporter%3B ABC transporter transmembrane region~TIGRFAM: ABC-type bacteriocin transporter gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1063 Trebr_1064 Trebr_1064 Trebr_1064 1269092 1269688 - hypothetical protein IMG reference gene:2504919950 gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1064 Trebr_1065 Trebr_1065 Trebr_1065 1269719 1270870 - hypothetical protein IMG reference gene:2504919951 gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1065 Trebr_1066 Trebr_1066 Trebr_1066 1270883 1271383 - hypothetical protein IMG reference gene:2504919952 gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1066 Trebr_1067 Trebr_1067 Trebr_1067 1271414 1272571 - hypothetical protein IMG reference gene:2504919953 gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1067 Trebr_1068 Trebr_1068 Trebr_1068 1272621 1274249 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: mif:Metin_0252 glycosyl transferase group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase group 1%3B~IMG reference gene:2504919954~PFAM: Starch synthase catalytic domain%3B Glycosyl transferases group 1 gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1068 Trebr_1069 Trebr_1069 Trebr_1069 1274890 1276131 + transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: wch:wcw_0483 transposase~PFAM: Transposase%2C mutator type~SPTR: Transposase%3B~IMG reference gene:2504919955~PFAM: Transposase%2C Mutator family gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1069 Trebr_1070 Trebr_1070 Trebr_1070 1276114 1276779 - leucine-rich repeat-containing protein InterPro IPR001611~KEGG: tan:TA07655 protein phosphatase regulator subunit~PFAM: Leucine-rich repeat~SPTR: Protein phosphatase regulator subunit%2C putative%3B~IMG reference gene:2504919956~PFAM: Leucine Rich Repeat gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1070 Trebr_1071 Trebr_1071 Trebr_1071 1276800 1277444 - hypothetical protein IMG reference gene:2504919957 gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1071 Trebr_1072 Trebr_1072 Trebr_1072 1277939 1278082 - hypothetical protein KEGG: ppn:Palpr_2768 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919958~PFAM: Protein of unknown function (DUF1451) gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1072 Trebr_1073 Trebr_1073 Trebr_1073 1278173 1278385 + hypothetical protein IMG reference gene:2504919959 gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1073 Trebr_1074 Trebr_1074 Trebr_1074 1278426 1280387 - GMP synthase%2C small subunit COGs: COG0519 GMP synthase PP-ATPase domain/subunit~InterPro IPR004739:IPR000991:IPR001674~KEGG: fsu:Fisuc_2984 GMP synthase~PFAM: GMP synthase%2C C-terminal%3B Glutamine amidotransferase class-I%2C C-terminal~SPTR: GMP synthase%2C pp-ATPase domain/subunit%3B~TIGRFAM: GMP synthase%2C N-terminal~IMG reference gene:2504919960~PFAM: Glutamine amidotransferase class-I%3B GMP synthase C terminal domain%3B NAD synthase~TIGRFAM: GMP synthase (glutamine-hydrolyzing)%2C C-terminal domain or B subunit%3B GMP synthase (glutamine-hydrolyzing)%2C N-terminal domain or A subunit gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1074 Trebr_1075 Trebr_1075 Trebr_1075 1280384 1282060 - CTP synthase COGs: COG0504 CTP synthase (UTP-ammonia lyase)~HAMAP: CTP synthase~InterPro IPR004468:IPR017456:IPR000991~KEGG: tde:TDE2692 CTP synthetase~PFAM: CTP synthase%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal~PRIAM: CTP synthase~SPTR: CTP synthase%3B~TIGRFAM: CTP synthase~IMG reference gene:2504919961~PFAM: Glutamine amidotransferase class-I%3B CTP synthase N-terminus~TIGRFAM: CTP synthase gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1075 Trebr_1076 Trebr_1076 Trebr_1076 1282155 1283423 - cyclic nucleotide-binding protein COGs: COG1295 membrane protein~InterPro IPR000595:IPR004664~KEGG: tde:TDE0150 ribonuclease BN-like family protein~PFAM: Cyclic nucleotide-binding%3B Ribonuclease BN-related~SMART: Cyclic nucleotide-binding~SPTR: Ribonuclease BN-like family protein%3B~IMG reference gene:2504919962~PFAM: Ribonuclease BN-like family%3B Cyclic nucleotide-binding domain gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1076 Trebr_1077 Trebr_1077 Trebr_1077 1283623 1284066 + Nucleoside diphosphate kinase COGs: COG0105 Nucleoside diphosphate kinase~HAMAP: Nucleoside diphosphate kinase~InterPro IPR001564~KEGG: apo:Arcpr_0498 nucleoside-diphosphate kinase~PFAM: Nucleoside diphosphate kinase%2C core~PRIAM: Nucleoside-diphosphate kinase~SMART: Nucleoside diphosphate kinase%2C core~SPTR: Nucleoside diphosphate kinase%3B~IMG reference gene:2504919963~PFAM: Nucleoside diphosphate kinase gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1077 Trebr_1078 Trebr_1078 Trebr_1078 1284076 1285125 + Glycerol-3-phosphate dehydrogenase (NAD(P)+) COGs: COG0240 Glycerol-3-phosphate dehydrogenase~HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]~InterPro IPR011128:IPR006109~KEGG: tde:TDE2090 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase~PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase%2C C-terminal%3B NAD-dependent glycerol-3-phosphate dehydrogenase%2C N-terminal~SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]%3B~IMG reference gene:2504919964~PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus%3B NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1078 Trebr_1079 Trebr_1079 Trebr_1079 1285135 1286352 + Arginine biosynthesis bifunctional protein ArgJ COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase)~HAMAP: Arginine biosynthesis protein ArgJ~InterPro IPR002813~KEGG: arginine biosynthesis bifunctional protein ArgJ~PFAM: Arginine biosynthesis protein ArgJ~PRIAM: Amino-acid N-acetyltransferase~SPTR: Arginine biosynthesis bifunctional protein ArgJ%3B~TIGRFAM: Arginine biosynthesis protein ArgJ~IMG reference gene:2504919965~PFAM: ArgJ family~TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1079 Trebr_1080 Trebr_1080 Trebr_1080 1286370 1287236 + acetylglutamate kinase COGs: COG0548 Acetylglutamate kinase~InterPro IPR004662:IPR001048~KEGG: acetylglutamate kinase~PFAM: Aspartate/glutamate/uridylate kinase~PRIAM: Acetylglutamate kinase~SPTR: Acetylglutamate kinase%3B~TIGRFAM: Acetylglutamate kinase~IMG reference gene:2504919966~PFAM: Amino acid kinase family~TIGRFAM: acetylglutamate kinase gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1080 Trebr_1081 Trebr_1081 Trebr_1081 1287265 1288467 + Acetylornithine/succinyldiaminopimelate aminotransferase COGs: COG4992 Ornithine/acetylornithine aminotransferase~HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase~InterPro IPR004636:IPR005814~KEGG: mta:Moth_2287 acetylornithine aminotransferase~PFAM: Aminotransferase class-III~PRIAM: Acetylornithine transaminase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Acetylornithine/succinylornithine aminotransferase~IMG reference gene:2504919967~PFAM: Aminotransferase class-III~TIGRFAM: acetylornithine and succinylornithine aminotransferases gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1081 Trebr_1082 Trebr_1082 Trebr_1082 1288479 1289513 - transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843~KEGG: sta:STHERM_c20570 transcriptional regulatory protein~PFAM: HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI~SPTR: Transcriptional regulator%2C LacI family%3B~IMG reference gene:2504919968~PFAM: Bacterial regulatory proteins%2C lacI family gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1082 Trebr_1083 Trebr_1083 Trebr_1083 1289828 1291033 + galactose/glucose-binding lipoprotein COGs: COG1879 ABC-type sugar transport system periplasmic component~KEGG: tde:TDE2217 galactose/glucose-binding lipoprotein~SPTR: Galactose/glucose-binding lipoprotein%3B~IMG reference gene:2504919969 gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1083 Trebr_1084 Trebr_1084 Trebr_1084 1291184 1292677 + Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: tde:TDE2216 galactoside ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Galactose/methyl galactoside import ATP-binding protein MglA%3B~IMG reference gene:2504919970~PFAM: ABC transporter gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1084 Trebr_1085 Trebr_1085 Trebr_1085 1292704 1294404 + ABC-type transporter%2C integral membrane subunit COGs: COG4211 ABC-type glucose/galactose transport system permease component~InterPro IPR001851~KEGG: tde:TDE2215 galactoside ABC transporter%2C permease protein%2C putative~PFAM: Bacterial inner-membrane translocator~SPTR: Galactoside ABC transporter%2C permease protein%2C putative%3B~IMG reference gene:2504919971~PFAM: Branched-chain amino acid transport system / permease component gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1085 Trebr_1086 Trebr_1086 Trebr_1086 1294502 1295470 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase~InterPro IPR000887~KEGG: aco:Amico_1665 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~PFAM: KDPG/KHG aldolase~PRIAM: 2-dehydro-3-deoxy-phosphogluconate aldolase~SPTR: Entner-Doudoroff aldolase%3B~TIGRFAM: KDPG/KHG aldolase~IMG reference gene:2504919972~PFAM: KDPG and KHG aldolase~TIGRFAM: Entner-Doudoroff aldolase gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1086 Trebr_1087 Trebr_1087 Trebr_1087 1295606 1295974 - regulatory protein ArsR InterPro IPR001845~KEGG: dhd:Dhaf_2130 transcriptional regulator%2C ArsR family~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR~SPTR: Transcriptional regulator%2C ArsR%3B~IMG reference gene:2504919973~PFAM: Bacterial regulatory protein%2C arsR family gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1087 Trebr_1088 Trebr_1088 Trebr_1088 1296079 1298208 - single-stranded-DNA-specific exonuclease RecJ COGs: COG0608 Single-stranded DNA-specific exonuclease~InterPro IPR004610:IPR001667:IPR003156~KEGG: tde:TDE2190 single-stranded-DNA-specific exonuclease RecJ~PFAM: Phosphoesterase%2C RecJ-like%3B Phosphoesterase%2C DHHA1~SPTR: Single-stranded-DNA-specific exonuclease RecJ%3B~TIGRFAM: Bacterial RecJ exonuclease~IMG reference gene:2504919974~PFAM: DHHA1 domain%3B DHH family~TIGRFAM: single-stranded-DNA-specific exonuclease RecJ gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1088 Trebr_1089 Trebr_1089 Trebr_1089 1298302 1299111 - DNA repair protein recO COGs: COG1381 Recombinational DNA repair protein (RecF pathway)~HAMAP: DNA repair protein recO~InterPro IPR003717~KEGG: tde:TDE0436 recombination protein O~PFAM: Recombination protein O%2C RecO~SPTR: Recombination protein O%3B~TIGRFAM: Recombination protein O%2C RecO~IMG reference gene:2504919975~PFAM: Recombination protein O C terminal%3B Recombination protein O N terminal~TIGRFAM: DNA repair protein RecO gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1089 Trebr_1090 Trebr_1090 Trebr_1090 1299256 1300545 + protein of unknown function Met10 COGs: COG1092 SAM-dependent methyltransferase~InterPro IPR003402~KEGG: sth:STH3137 putative SAM-dependent methyltransferase~PFAM: Protein of unknown function Met10~SPTR: Putative SAM-dependent methyltransferase%3B~IMG reference gene:2504919976~PFAM: S-adenosylmethionine-dependent methyltransferase gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1090 Trebr_1091 Trebr_1091 Trebr_1091 1300545 1301495 + tRNA dimethylallyltransferase COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase~HAMAP: tRNA dimethylallyltransferase~InterPro IPR018022:IPR002627~KEGG: tde:TDE1447 tRNA delta(2)-isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase~PRIAM: tRNA isopentenyltransferase~SPTR: tRNA dimethylallyltransferase 2%3B~TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~IMG reference gene:2504919977~PFAM: IPP transferase~TIGRFAM: tRNA dimethylallyltransferase gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1091 Trebr_1092 Trebr_1092 Trebr_1092 1301486 1302829 + hypothetical protein KEGG: ppd:Ppro_0504 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919978 gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1092 Trebr_1093 Trebr_1093 Trebr_1093 1302819 1303034 - hypothetical protein KEGG: tde:TDE0967 hypothetical protein~SPTR: Conserved domain protein%3B~IMG reference gene:2504919979 gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1093 Trebr_1094 Trebr_1094 Trebr_1094 1303156 1303911 + TatD-related deoxyribonuclease COGs: COG0084 Mg-dependent DNase~InterPro IPR001130~KEGG: tde:TDE0966 TatD family hydrolase~PFAM: Deoxyribonuclease%2C TatD-related~SPTR: Hydrolase%2C TatD family%3B~IMG reference gene:2504919980~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1094 Trebr_1095 Trebr_1095 Trebr_1095 1303906 1304274 - Hpt domain protein InterPro IPR008207~PFAM: Signal transduction histidine kinase%2C phosphotransfer (Hpt) region~SPTR: Probable sensor/response regulator hybrid protein%3B~IMG reference gene:2504919981~PFAM: Hpt domain gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1095 Trebr_1096 Trebr_1096 Trebr_1096 1304320 1306107 + Peptidase S24/S26A/S26B%2C conserved region COGs: COG0681 Signal peptidase I~InterPro IPR019759~KEGG: tde:TDE2219 hypothetical protein~PFAM: Peptidase S24/S26A/S26B%2C conserved region~SPTR: Signal peptidase I domain protein%3B~IMG reference gene:2504919982~PFAM: Peptidase S24-like~TIGRFAM: signal peptidase I%2C bacterial type gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1096 Trebr_1097 Trebr_1097 Trebr_1097 1306266 1307483 + glycoside hydrolase family 18 COGs: COG3325 Chitinase~InterPro IPR011583:IPR001223~KEGG: cpy:Cphy_2572 glycoside hydrolase family protein~PFAM: Glycoside hydrolase%2C family 18%2C catalytic domain~SMART: Chitinase II~SPTR: Glycoside hydrolase family 18%3B~IMG reference gene:2504919983~PFAM: Glycosyl hydrolases family 18 gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1097 Trebr_1098 Trebr_1098 Trebr_1098 1307590 1308429 - ABC-type transporter%2C integral membrane subunit COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: dae:Dtox_0335 ABC-3 protein~PFAM: ABC-3~SPTR: Putative cation ABC transporter%2C permease protein%3B~IMG reference gene:2504919984~PFAM: ABC 3 transport family gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1098 Trebr_1099 Trebr_1099 Trebr_1099 1308426 1309301 - ABC transporter related protein COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR003593:IPR003439~KEGG: cce:Ccel_3414 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC superfamily ATP binding cassette transporter%2C ABC protein%3B~IMG reference gene:2504919985~PFAM: ABC transporter gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1099 Trebr_1100 Trebr_1100 Trebr_1100 1309403 1310296 - DNA/RNA non-specific endonuclease COGs: COG1864 DNA/RNA endonuclease G NUC1~InterPro IPR020821:IPR001604~KEGG: cts:Ctha_1807 DNA/RNA non-specific endonuclease~PFAM: DNA/RNA non-specific endonuclease~SMART: Extracellular Endonuclease%2C subunit A~SPTR: DNA/RNA non-specific endonuclease%3B~IMG reference gene:2504919986~PFAM: DNA/RNA non-specific endonuclease gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1100 Trebr_1101 Trebr_1101 Trebr_1101 1310423 1310734 + glutamyl-tRNA(Gln) amidotransferase%2C C subunit InterPro IPR003837~KEGG: tde:TDE0577 glutamyl-tRNA(Gln) amidotransferase%2C C subunit~SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit C%3B~TIGRFAM: Glu-tRNAGln amidotransferase%2C C subunit~IMG reference gene:2504919987~PFAM: Glu-tRNAGln amidotransferase C subunit~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C C subunit gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1101 Trebr_1102 Trebr_1102 Trebr_1102 1310737 1312284 + Glutamyl-tRNA(Gln) amidotransferase subunit A COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase~HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit~InterPro IPR004412:IPR000120~KEGG: tde:TDE0576 aspartyl/glutamyl-tRNA amidotransferase subunit A~PFAM: Amidase~SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A%3B~TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit~IMG reference gene:2504919988~PFAM: Amidase~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C A subunit gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1102 Trebr_1103 Trebr_1103 Trebr_1103 1312281 1313816 + Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)~HAMAP: Glutamyl-tRNA(Gln) amidotransferase%2C B subunit~InterPro IPR004413:IPR006075:IPR006107:IPR018027~KEGG: tde:TDE0575 aspartyl/glutamyl-tRNA amidotransferase subunit B~PFAM: Glutamyl-tRNA(Gln) amidotransferase%2C subunit B/E%2C N-terminal%3B Glutamyl-tRNA(Gln) amidotransferase%2C subunit B/E%2C central region%3B Asn/Gln amidotransferase~SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B%3B~TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase%2C B subunit~IMG reference gene:2504919989~PFAM: GatB/GatE catalytic domain%3B GatB domain~TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C B subunit gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1103 Trebr_1104 Trebr_1104 Trebr_1104 1313831 1314772 + hypothetical protein KEGG: tpp:TPASS_0678 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919990~PFAM: Aminotransferase class-III gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1104 Trebr_1105 Trebr_1105 Trebr_1105 1314759 1315055 + hypothetical protein KEGG: ssm:Spirs_3755 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919991 gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1105 Trebr_1106 Trebr_1106 Trebr_1106 1315128 1315538 + hypothetical protein KEGG: tde:TDE1018 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504919992 gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1106 Trebr_1107 Trebr_1107 Trebr_1107 1315924 1317990 + diguanylate phosphodiesterase COGs: COG2200 FOG: EAL domain~InterPro IPR001633~KEGG: cdl:CDR20291_0742 putative signaling protein~PFAM: Diguanylate phosphodiesterase%2C predicted~SMART: Diguanylate phosphodiesterase%2C predicted~SPTR: Probable signaling protein%3B~IMG reference gene:2504919994~PFAM: EAL domain%3B GGDEF domain gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1107 Trebr_1108 Trebr_1108 Trebr_1108 1318138 1319859 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: gsu:GSU1298 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504919995~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1108 Trebr_1109 Trebr_1109 Trebr_1109 1320197 1320859 - Haloacid dehalogenase domain protein hydrolase COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834~KEGG: cts:Ctha_1646 haloacid dehalogenase domain-containing protein hydrolase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Haloacid dehalogenase domain protein hydrolase%3B~IMG reference gene:2504919996~PFAM: haloacid dehalogenase-like hydrolase gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1109 Trebr_1110 Trebr_1110 Trebr_1110 1320856 1322100 - Carbohydrate kinase%2C FGGY COGs: COG1070 Sugar (pentulose and hexulose) kinase~InterPro IPR018484:IPR018485~KEGG: tde:TDE2722 carbhohydrate kinase~PFAM: Carbohydrate kinase%2C FGGY%2C N-terminal%3B Carbohydrate kinase%2C FGGY%2C C-terminal~SPTR: Carhohydrate kinase%2C FGGY family%3B~IMG reference gene:2504919997~PFAM: FGGY family of carbohydrate kinases%2C N-terminal domain%3B FGGY family of carbohydrate kinases%2C C-terminal domain gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1110 Trebr_1111 Trebr_1111 Trebr_1111 1322100 1323338 - ribose-phosphate pyrophosphokinase COGs: COG0462 Phosphoribosylpyrophosphate synthetase~InterPro IPR005946:IPR000836~KEGG: tde:TDE2723 phosphoribosylpyrophosphate synthetase~PFAM: Phosphoribosyltransferase~PRIAM: Ribose-phosphate diphosphokinase~SPTR: Phosphoribosylpyrophosphate synthetase%3B~TIGRFAM: Phosphoribosyl pyrophosphokinase~IMG reference gene:2504919998~PFAM: Phosphoribosyl transferase domain~TIGRFAM: ribose-phosphate pyrophosphokinase gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1111 Trebr_1112 Trebr_1112 Trebr_1112 1323605 1325266 + diphosphate/fructose-6-phosphate 1-phosphotransferase COGs: COG0205 6-phosphofructokinase~InterPro IPR011183:IPR000023~KEGG: sta:STHERM_c17480 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta~PFAM: Phosphofructokinase~SPTR: Pyrophosphate-dependent phosphofructokinase%3B~TIGRFAM: Pyrophosphate-dependent phosphofructokinase PfpB~IMG reference gene:2504919999~PFAM: Phosphofructokinase~TIGRFAM: diphosphate--fructose-6-phosphate 1-phosphotransferase gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1112 Trebr_1113 Trebr_1113 Trebr_1113 1325336 1325593 - protein of unknown function UPF0153 InterPro IPR005358~KEGG: etr:ETAE_2286 hypothetical protein~PFAM: Uncharacterised protein family UPF0153~SPTR: Proteinase inhibitor%3B~manually curated~IMG reference gene:2504920000 gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1113 Trebr_1114 Trebr_1114 Trebr_1114 1325716 1327038 + peptidase S1 and S6 chymotrypsin/Hap COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001478:IPR001254~KEGG: tde:TDE1966 trypsin domain/PDZ domain-containing protein~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap~SMART: PDZ/DHR/GLGF~SPTR: Protease do%3B~IMG reference gene:2504920001~PFAM: Trypsin gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1114 Trebr_1115 Trebr_1115 Trebr_1115 1327047 1329044 + UvrABC system protein B COGs: COG0556 Helicase subunit of the DNA excision repair complex~HAMAP: Excinuclease ABC%2C B subunit~InterProIPR004807:IPR014001:IPR001650:IPR006935:IPR 001943~KEGG: tde:TDE1369 excinuclease ABC subunit B~PFAM: DNA/RNA helicase%2C C-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B UvrB/UvrC protein~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: UvrABC system protein B%3B~TIGRFAM: Excinuclease ABC%2C B subunit~IMG reference gene:2504920002~PFAM: Helicase conserved C-terminal domain%3B UvrB/uvrC motif%3B Type III restriction enzyme%2C res subunit%3B Ultra-violet resistance protein B~TIGRFAM: excinuclease ABC%2C B subunit gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1115 Trebr_1116 Trebr_1116 Trebr_1116 1329120 1330400 - Nitrite reductase (NAD(P)H) COGs: COG1251 NAD(P)H-nitrite reductase~InterPro IPR013027~KEGG: gym:GYMC10_2506 nitrite reductase (NAD(P)H)%2C large subunit~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PRIAM: Nitrite reductase (NAD(P)H)~SPTR: Nitrite reductase (NAD(P)H)%2C large subunit%3B~IMG reference gene:2504920003~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1116 Trebr_1117 Trebr_1117 Trebr_1117 1330528 1331436 + beta-lactamase domain protein COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I~KEGG: ssm:Spirs_3682 beta-lactamase domain protein~SPTR: Beta-lactamase domain protein%3B~IMG reference gene:2504920004~PFAM: Metallo-beta-lactamase superfamily gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1117 Trebr_1118 Trebr_1118 Trebr_1118 1331440 1333242 - pyruvate kinase COGs: COG0469 Pyruvate kinase~InterPro IPR001697:IPR015793:IPR015794~KEGG: ssm:Spirs_0059 pyruvate kinase~PFAM: Pyruvate kinase%2C barrel%3B Pyruvate kinase%2C alpha/beta~PRIAM: Pyruvate kinase~SPTR: Pyruvate kinase%3B~TIGRFAM: Pyruvate kinase~IMG reference gene:2504920005~PFAM: Pyruvate kinase%2C barrel domain%3B PEP-utilising enzyme%2C mobile domain%3B Pyruvate kinase%2C alpha/beta domain~TIGRFAM: pyruvate kinase gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1118 Trebr_1119 Trebr_1119 Trebr_1119 1333359 1335548 - hypothetical protein KEGG: hoh:Hoch_1608 peptidase C14 caspase catalytic subunit P20~SPTR: Peptidase C14 caspase catalytic subunit p20%3B~IMG reference gene:2504920006~PFAM: Caspase domain gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1119 Trebr_1120 Trebr_1120 Trebr_1120 1335561 1336313 - hypothetical protein KEGG: afw:Anae109_0876 hypothetical protein~SPTR: ActD%3B~IMG reference gene:2504920007 gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1120 Trebr_1121 Trebr_1121 Trebr_1121 1336303 1336818 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog~InterPro IPR014284:IPR007627~KEGG: RNA polymerase sigma-70 factor%2C group 3~PFAM: RNA polymerase sigma-70 region 2~SPTR: RNA polymerase sigma-70 factor%2C group 3%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504920008~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1121 Trebr_1122 Trebr_1122 Trebr_1122 1337180 1338370 - hypothetical protein KEGG: ssm:Spirs_3139 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920009 gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1122 Trebr_1123 Trebr_1123 Trebr_1123 1339301 1339922 + pseudogene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1123 Trebr_1124 Trebr_1124 Trebr_1124 1340075 1340977 + hypothetical protein KEGG: clj:CLJU_c30590 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920011 gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1124 Trebr_1125 Trebr_1125 Trebr_1125 1340964 1341794 + Radical SAM domain protein COGs: COG1533 DNA repair photolyase~InterPro IPR007197~KEGG: amu:Amuc_1314 radical SAM domain protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504920012~PFAM: Radical SAM superfamily gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1125 Trebr_1126 Trebr_1126 Trebr_1126 1341842 1342378 + hypothetical protein KEGG: cbk:CLL_A2046 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920013 gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1126 Trebr_1127 Trebr_1127 Trebr_1127 1342819 1344015 + integron integrase COGs: COG4974 Site-specific recombinase XerD~InterPro IPR011946:IPR004107:IPR002104~KEGG: cph:Cpha266_0257 integron integrase~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~SPTR: Similar to site-specific tyrosine recombinase%3B~TIGRFAM: Integrase%2C integron-type~IMG reference gene:2504920014~PFAM: Phage integrase%2C N-terminal SAM-like domain%3B Phage integrase family~TIGRFAM: integron integrase gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1127 Trebr_1128 Trebr_1128 Trebr_1128 1344585 1345421 + hypothetical protein SPTR: Putative lipoprotein%3B~IMG reference gene:2504920015 gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1128 Trebr_1129 Trebr_1129 Trebr_1129 1345716 1346846 - transposase IS116/IS110/IS902 family protein COGs: COG3547 Transposase and inactivated derivatives~InterPro IPR003346~KEGG: bpb:bpr_IV010 IS110 family transposase~PFAM: Transposase%2C IS116/IS110/IS902~SPTR: ISCps8%2C transposase%3B~IMG reference gene:2504920016~PFAM: Transposase IS116/IS110/IS902 family%3B Transposase gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1129 Trebr_1130 Trebr_1130 Trebr_1130 1347383 1348624 + transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: wch:wcw_0483 transposase~PFAM: Transposase%2C mutator type~SPTR: Transposase%3B~IMG reference gene:2504920017~PFAM: Transposase%2C Mutator family gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1130 Trebr_1131 Trebr_1131 Trebr_1131 1348662 1349288 - pseudogene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1131 Trebr_1132 Trebr_1132 Trebr_1132 1349284 1349406 - pseudogene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1132 Trebr_1133 Trebr_1133 Trebr_1133 1349444 1349767 - hypothetical protein KEGG: lin:lin0358 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920020~PFAM: Inorganic pyrophosphatase gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1133 Trebr_1134 Trebr_1134 Trebr_1134 1350774 1350935 + pseudogene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1134 Trebr_1135 Trebr_1135 Trebr_1135 1351088 1352422 + Hexokinase COGs: COG5026 Hexokinase~InterPro IPR001312~KEGG: tpp:TPASS_0505 hexokinase~PFAM: Hexokinase~PRIAM: Hexokinase~SPTR: Hexokinase%3B~IMG reference gene:2504920022~PFAM: Hexokinase gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1135 Trebr_1136 Trebr_1136 Trebr_1136 1352436 1355630 + hypothetical protein KEGG: tde:TDE1988 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920023 gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1136 Trebr_1137 Trebr_1137 Trebr_1137 1355634 1356275 - hypothetical protein KEGG: tde:TDE1334 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920024 gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1137 Trebr_1138 Trebr_1138 Trebr_1138 1356495 1356764 + flagellar biosynthetic protein FliQ COGs: COG1987 Flagellar biosynthesis pathway component FliQ~InterPro IPR006305:IPR002191~KEGG: tpp:TPASS_0717 flagellar biosynthetic protein~PFAM: Bacterial export protein FliQ%2C family 3~SPTR: Flagellar biosynthetic protein FliQ%3B~TIGRFAM: Flagellar biosynthesis protein FliQ~IMG reference gene:2504920025~PFAM: Bacterial export proteins%2C family 3~TIGRFAM: flagellar biosynthetic protein FliQ gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1138 Trebr_1139 Trebr_1139 Trebr_1139 1356767 1357606 + flagellar biosynthetic protein FliR COGs: COG1684 Flagellar biosynthesis pathway component FliR~InterPro IPR006303:IPR002010~KEGG: tpp:TPASS_0716 flagellar biosynthetic protein~PFAM: Type III secretion system inner membrane R protein~SPTR: Flagellar biosynthetic protein fliR%3B~TIGRFAM: Flagellar biosynthesis protein FliR~IMG reference gene:2504920026~PFAM: Bacterial export proteins%2C family 1~TIGRFAM: flagellar biosynthetic protein FliR gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1139 Trebr_1140 Trebr_1140 Trebr_1140 1357603 1358739 + flagellar biosynthetic protein FlhB COGs: COG1377 Flagellar biosynthesis pathway component FlhB~InterPro IPR006136:IPR006135~KEGG: tde:TDE0054 flagellar biosynthesis protein FlhB~PFAM: Type III secretion exporter~SPTR: Flagellar biosynthetic protein FlhB%3B~TIGRFAM: Flagellar biosynthetic protein FlhB~IMG reference gene:2504920027~PFAM: FlhB HrpN YscU SpaS Family~TIGRFAM: flagellar biosynthetic protein FlhB gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1140 Trebr_1141 Trebr_1141 Trebr_1141 1358785 1360860 + flagellar biosynthesis protein FlhA COGs: COG1298 Flagellar biosynthesis pathway component FlhA~InterPro IPR006301:IPR001712~KEGG: sta:STHERM_c09300 hypothetical protein~PFAM: Type III secretion system FHIPEP~SPTR: Flagellar biosynthesis protein FlhA%3B~TIGRFAM: Flagellar biosynthesis protein FlhA~IMG reference gene:2504920028~PFAM: FHIPEP family~TIGRFAM: flagellar biosynthesis protein FlhA gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1141 Trebr_1142 Trebr_1142 Trebr_1142 1360865 1362163 + GTP-binding signal recognition particle SRP54 G- domain protein COGs: COG1419 Flagellar GTP-binding protein~InterPro IPR003593:IPR000897~KEGG: tde:TDE2686 flagellar biosynthetic protein FlhF~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Flagellar biosynthetic protein FlhF%3B~IMG reference gene:2504920029~PFAM: SRP54-type protein%2C GTPase domain~TIGRFAM: flagellar biosynthetic protein FlhF gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1142 Trebr_1143 Trebr_1143 Trebr_1143 1362166 1363035 + Cobyrinic acid ac-diamide synthase COGs: COG0455 ATPase involved in chromosome partitioning~InterPro IPR002586~KEGG: tde:TDE2685 flagellar synthesis regulator FleN~PFAM: Cobyrinic acid a%2Cc-diamide synthase~SPTR: Flagellar synthesis regulator FleN%3B~IMG reference gene:2504920030~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1143 Trebr_1144 Trebr_1144 Trebr_1144 1363097 1363873 + hypothetical protein KEGG: sta:STHERM_c09330 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920031 gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1144 Trebr_1145 Trebr_1145 Trebr_1145 1363898 1364686 + RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit~InterProIPR014284:IPR012845:IPR007627:IPR007624:IPR 007630~KEGG: ssm:Spirs_1586 RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG subfamily~PFAM: RNA polymerase sigma-70 region 4%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 3~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma factor%2C FliA/WhiG%3B RNA polymerase sigma-70~IMG reference gene:2504920032~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C FliA/WhiG family%3B RNA polymerase sigma factor%2C sigma-70 family gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1145 Trebr_1146 Trebr_1146 Trebr_1146 1364742 1366715 + protein of unknown function DUF342 COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain~InterPro IPR005646~KEGG: tde:TDE2682 hypothetical protein~PFAM: Protein of unknown function DUF342~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920033~PFAM: Protein of unknown function (DUF342) gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1146 Trebr_1147 Trebr_1147 Trebr_1147 1366696 1367037 + hypothetical protein KEGG: tde:TDE2681 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920034 gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1147 Trebr_1148 Trebr_1148 Trebr_1148 1367040 1367675 + hypothetical protein KEGG: tde:TDE2680 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920035 gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1148 Trebr_1149 Trebr_1149 Trebr_1149 1367751 1368656 - hypothetical protein KEGG: ssm:Spirs_0019 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920036 gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1149 Trebr_1150 Trebr_1150 Trebr_1150 1369129 1370064 + hypothetical protein COGs: COG0666 FOG: Ankyrin repeat~InterPro IPR002110~KEGG: tpp:TPASS_0502 hypothetical protein~SPTR: Ankyrin repeat protein%3B~IMG reference gene:2504920038~PFAM: Ankyrin repeat gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1150 Trebr_1151 Trebr_1151 Trebr_1151 1370070 1371233 + UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase~HAMAP:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase~InterPro IPR006009:IPR004276:IPR007235~KEGG: tde:TDE1974 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase~PFAM: Glycosyl transferase%2C family 28%3B Glycosyl transferase%2C family 28%2C C-terminal~PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase~SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B~TIGRFAM: N-acetylglucosaminyltransferase%2C MurG~IMG reference gene:2504920039~PFAM: Glycosyltransferase family 28 N-terminal domain%3B Glycosyltransferase family 28 C-terminal domain~TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1151 Trebr_1152 Trebr_1152 Trebr_1152 1371230 1371712 + Colicin V production protein InterPro IPR003825~KEGG: tde:TDE1973 CvpA family protein~PFAM: Colicin V production protein~SPTR: CvpA family protein%3B~IMG reference gene:2504920040~PFAM: Colicin V production protein gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1152 Trebr_1153 Trebr_1153 Trebr_1153 1371712 1372965 + DNA polymerase III domain-containing protein KEGG: tde:TDE1971 DNA polymerase III domain-containing protein~SPTR: DNA polymerase III domain protein%3B~IMG reference gene:2504920041 gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1153 Trebr_1154 Trebr_1154 Trebr_1154 1372962 1374155 + PAS/PAC sensor signal transduction histidine kinase COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation~InterPro IPR000014:IPR003661:IPR003594:IPR013656~KEGG: ssm:Spirs_1708 PAS/PAC sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B PAS fold-4~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B PAS~SPTR: PAS/PAC sensor signal transduction histidine kinase%3B~TIGRFAM: PAS~IMG reference gene:2504920042~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B PAS fold~TIGRFAM: PAS domain S-box gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1154 Trebr_1155 Trebr_1155 Trebr_1155 1374165 1375592 + two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789:IPR003593:IPR002078:IPR002197~KEGG: tde:TDE1969 sigma-54 dependent transcriptional regulator/response regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver region%3B ATPase%2C AAA+ type%2C core~SPTR: Acetoacetate metabolism regulatory protein AtoC%3B~IMG reference gene:2504920043~PFAM: Response regulator receiver domain%3B Bacterial regulatory protein%2C Fis family%3B Sigma-54 interaction domain gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1155 Trebr_1156 Trebr_1156 Trebr_1156 1375593 1376045 - transcriptional regulator%2C MarR family COGs: COG1846 Transcriptional regulators~InterPro IPR000835~KEGG: cpy:Cphy_2561 MarR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR~SPTR: Transcriptional regulator%2C MarR family%3B~IMG reference gene:2504920044~PFAM: MarR family gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1156 Trebr_1157 Trebr_1157 Trebr_1157 1376042 1376491 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein COGs: COG3871 Uncharacterized stress protein (general stress protein 26)~InterPro IPR011576~KEGG: gur:Gura_1554 pyridoxamine 5'-phosphate oxidase-related%2C FMN-binding~PFAM: Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain~SPTR: Pyridoxamine 5'-phosphate oxidase-related%2C FMN-binding%3B~IMG reference gene:2504920045~PFAM: Pyridoxamine 5'-phosphate oxidase gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1157 Trebr_1158 Trebr_1158 Trebr_1158 1376915 1377616 - Late competence development protein ComFB InterPro IPR019657~KEGG: tde:TDE1406 hypothetical protein~PFAM: Late competence development protein ComFB~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920047~PFAM: Late competence development protein ComFB gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1158 Trebr_1159 Trebr_1159 Trebr_1159 1377617 1378861 - metal dependent phosphohydrolase COGs: COG1078 HD superfamily phosphohydrolase~InterPro IPR003607:IPR006674~KEGG: tde:TDE1407 hypothetical protein~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SMART: Metal-dependent phosphohydrolase%2C HD region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920048~PFAM: HD domain gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1159 Trebr_1160 Trebr_1160 Trebr_1160 1378878 1380914 - aconitate hydratase COGs: COG1048 Aconitase A~InterPro IPR006250:IPR001030:IPR000573~KEGG: ssm:Spirs_2351 aconitate hydratase~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%3B Aconitase A/isopropylmalate dehydratase small subunit%2C swivel~SPTR: Aconitate hydratase%3B~TIGRFAM: Aconitase%2C putative~IMG reference gene:2504920049~PFAM: Aconitase C-terminal domain%3B Aconitase family (aconitate hydratase)~TIGRFAM: aconitate hydratase%2C putative%2C Aquifex type gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1160 Trebr_1161 Trebr_1161 Trebr_1161 1381225 1381416 + RNA polymerase Rpb6 InterPro IPR006110~KEGG: tde:TDE0056 DNA-directed RNA polymerase%2C omega subunit%2C putative~PFAM: RNA polymerase Rpb6~SPTR: DNA-directed RNA polymerase%2C omega subunit%2C putative%3B~IMG reference gene:2504920050~PFAM: RNA polymerase Rpb6 gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1161 Trebr_1162 Trebr_1162 Trebr_1162 1381416 1382411 + tRNA dimethylallyltransferase COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase~HAMAP: tRNA dimethylallyltransferase~InterPro IPR018022:IPR002627~KEGG: tde:TDE0057 tRNA delta(2)-isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase~PRIAM: tRNA isopentenyltransferase~SPTR: tRNA dimethylallyltransferase%3B~TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~IMG reference gene:2504920051~PFAM: IPP transferase~TIGRFAM: tRNA dimethylallyltransferase gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1162 Trebr_1163 Trebr_1163 Trebr_1163 1382645 1384564 + 1-deoxy-D-xylulose-5-phosphate synthase COGs: COG1154 Deoxyxylulose-5-phosphate synthase~HAMAP: Deoxyxylulose-5-phosphate synthase~InterPro IPR005477:IPR005475:IPR005476~KEGG: tde:TDE1910 1-deoxy-D-xylulose-5-phosphate synthase~PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase~SPTR: 1-deoxy-D-xylulose-5-phosphate synthase%3B~TIGRFAM: Deoxyxylulose-5-phosphate synthase~IMG reference gene:2504920052~PFAM: Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1163 Trebr_1164 Trebr_1164 Trebr_1164 1384561 1385412 + dihydropteroate synthase COGs: COG0294 Dihydropteroate synthase~InterPro IPR006390:IPR000489~KEGG: sta:STHERM_c18380 dihydropteroate synthase~PFAM: Dihydropteroate synthase%2C DHPS~PRIAM: Dihydropteroate synthase~SPTR: Dihydropteroate synthase%3B~TIGRFAM: Dihydropteroate synthase~IMG reference gene:2504920053~PFAM: Pterin binding enzyme~TIGRFAM: dihydropteroate synthase gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1164 Trebr_1165 Trebr_1165 Trebr_1165 1385409 1386224 + Conserved hypothetical protein CHP00159 COGs: COG1624 conserved hypothetical protein~InterPro IPR014046:IPR003390~KEGG: tde:TDE1909 hypothetical protein~PFAM: DNA integrity scanning protein%2C DisA%2C N-terminal~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP00159~IMG reference gene:2504920054~PFAM: DisA bacterial checkpoint controller nucleotide-binding~TIGRFAM: TIGR00159 family protein gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1165 Trebr_1166 Trebr_1166 Trebr_1166 1386202 1387179 + YbbR family protein COGs: COG4856 conserved hypothetical protein~InterPro IPR012505~KEGG: ssm:Spirs_1648 YbbR family protein~PFAM: YbbR-like~SPTR: YbbR family protein%3B~IMG reference gene:2504920055~PFAM: YbbR-like protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1166 Trebr_1167 Trebr_1167 Trebr_1167 1387195 1387569 + Holo-(acyl-carrier-protein) synthase COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase)~HAMAP: Holo-[acyl-carrier-protein] synthase~InterPro IPR002582:IPR004568:IPR008278~KEGG: tde:TDE1907 4'-phosphopantetheinyl transferase~PFAM: 4'-phosphopantetheinyl transferase~SPTR: Holo-[acyl-carrier-protein] synthase%3B~TIGRFAM: Phosphopantethiene-protein transferase%3B Holo-[acyl carrier protein] synthase~IMG reference gene:2504920056~PFAM: 4'-phosphopantetheinyl transferase superfamily~TIGRFAM: phosphopantethiene--protein transferase domain%3B holo-[acyl-carrier-protein] synthase gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1167 Trebr_1168 Trebr_1168 Trebr_1168 1387598 1388503 + Protein of unknown function DUF2225 COGs: COG1655 conserved hypothetical protein~InterPro IPR018708~KEGG: tde:TDE2274 hypothetical protein~PFAM: Protein of unknown function DUF2225~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920057~PFAM: Uncharacterized protein conserved in bacteria (DUF2225) gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1168 Trebr_1169 Trebr_1169 Trebr_1169 1388512 1389285 + tRNA pseudouridine synthase A COGs: COG0101 Pseudouridylate synthase~HAMAP: Pseudouridine synthase I%2C TruA~InterPro IPR001406:IPR020097~KEGG: tde:TDE2275 tRNA pseudouridine synthase A~PFAM: Pseudouridine synthase I%2C TruA%2C alpha/beta domain~PRIAM: tRNA-pseudouridine synthase I~SPTR: tRNA pseudouridine synthase A%3B~TIGRFAM: Pseudouridine synthase I%2C TruA~IMG reference gene:2504920058~PFAM: tRNA pseudouridine synthase~TIGRFAM: pseudouridylate synthase I gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1169 Trebr_1170 Trebr_1170 Trebr_1170 1389310 1391364 - primosomal protein N' COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase~InterPro IPR005259:IPR014001:IPR001650:IPR011545~KEGG: tde:TDE2490 primosomal protein N'~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: Primosomal protein N'%3B~TIGRFAM: Primosomal protein n~IMG reference gene:2504920059~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase~TIGRFAM: primosomal protein N' gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1170 Trebr_1171 Trebr_1171 Trebr_1171 1391361 1392137 - phage SPO1 DNA polymerase-related protein COGs: COG1573 Uracil-DNA glycosylase~InterPro IPR005273:IPR005122~KEGG: tde:TDE2491 DNA polymerase domain-containing protein~PFAM: Uracil-DNA glycosylase-like~SPTR: DNA polymerase domain protein%3B~TIGRFAM: Phage SPO1 DNA polymerase-related protein~IMG reference gene:2504920060~PFAM: Uracil DNA glycosylase superfamily~TIGRFAM: uracil-DNA glycosylase%2C family 4 gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1171 Trebr_1172 Trebr_1172 Trebr_1172 1392342 1392974 + hypothetical protein IMG reference gene:2504920061 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1172 Trebr_1173 Trebr_1173 Trebr_1173 1392967 1394100 + hypothetical protein IMG reference gene:2504920062 gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1173 Trebr_1174 Trebr_1174 Trebr_1174 1394174 1394551 + Desulfoferrodoxin ferrous iron-binding region COGs: COG2033 Desulfoferrodoxin~InterPro IPR002742~KEGG: shi:Shel_15140 desulfoferrodoxin~PFAM: Desulfoferrodoxin%2C ferrous iron-binding region~SPTR: Superoxide reductase%3B~IMG reference gene:2504920063~PFAM: Desulfoferrodoxin~TIGRFAM: desulfoferrodoxin%3B desulfoferrodoxin ferrous iron-binding domain gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1174 Trebr_1175 Trebr_1175 Trebr_1175 1394604 1395677 - protein of unknown function UPF0118 COGs: COG0628 permease~InterPro IPR002549~KEGG: ssm:Spirs_2291 protein of unknown function UPF0118~PFAM: Uncharacterised protein family UPF0118~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920064~PFAM: Domain of unknown function DUF20 gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1175 Trebr_1176 Trebr_1176 Trebr_1176 1395744 1397021 - Seryl-tRNA synthetase COGs: COG0172 Seryl-tRNA synthetase~HAMAP: Seryl-tRNA synthetase~InterPro IPR002317:IPR015866:IPR002314~KEGG: tde:TDE2307 seryl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region%3B Seryl-tRNA synthetase%2C class IIa%2C N-terminal~PRIAM: Serine--tRNA ligase~SPTR: Seryl-tRNA synthetase%3B~TIGRFAM: Seryl-tRNA synthetase%2C class IIa~IMG reference gene:2504920065~PFAM: Seryl-tRNA synthetase N-terminal domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: seryl-tRNA synthetase gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1176 Trebr_1177 Trebr_1177 Trebr_1177 1397052 1397759 - protein of unknown function DUF541 COGs: COG2968 conserved hypothetical protein~InterPro IPR007497~KEGG: pla:Plav_2321 hypothetical protein~PFAM: Protein of unknown function DUF541~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920066~PFAM: Protein of unknown function (DUF541) gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1177 Trebr_1178 Trebr_1178 Trebr_1178 1397918 1399939 - methyl-accepting chemotaxis sensory transducer with Cache sensor COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR004010:IPR003660~KEGG: ssm:Spirs_3480 methyl-accepting chemotaxis sensory transducer with cache sensor~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B Cache%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer with Cache sensor%3B~IMG reference gene:2504920067~PFAM: HAMP domain%3B Cache domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1178 Trebr_1179 Trebr_1179 Trebr_1179 1400031 1401548 + UDP-N-acetylmuramate/alanine ligase COGs: COG0773 UDP-N-acetylmuramate-alanine ligase~InterPro IPR005758:IPR000713:IPR013221:IPR004101~KEGG: tde:TDE1085 UDP-N-acetylmuramate--L-alanine ligase~PFAM: Mur ligase%2C C-terminal%3B Mur ligase%2C N-terminal%3B Mur ligase%2C central~PRIAM: UDP-N-acetylmuramate--L-alanine ligase~SPTR: UDP-N-acetylmuramate--L-alanine ligase%3B~TIGRFAM: UDP-N-acetylmuramate-alanine ligase~IMG reference gene:2504920068~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramate--alanine ligase gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1179 Trebr_1180 Trebr_1180 Trebr_1180 1401593 1402474 + Conserved hypothetical protein CHP00255 COGs: COG1561 Uncharacterized stress-induced protein~InterPro IPR005229:IPR013527:IPR013551~KEGG: tde:TDE1086 hypothetical protein~PFAM: YicC-like%2C N-terminal%3B Domain of unknown function DUF1732~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP00255~IMG reference gene:2504920069~PFAM: YicC-like family%2C N-terminal region%3B Domain of unknown function (DUF1732)~TIGRFAM: TIGR00255 family protein gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1180 Trebr_1181 Trebr_1181 Trebr_1181 1402580 1402993 - hypothetical protein IMG reference gene:2504920070 gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1181 Trebr_1182 Trebr_1182 Trebr_1182 1403106 1404149 + Aldose 1-epimerase COGs: COG2017 Galactose mutarotase~InterPro IPR008183~KEGG: lby:Lbys_2505 aldose 1-epimerase~PFAM: Aldose 1-epimerase~PRIAM: Aldose 1-epimerase~SPTR: Aldose 1-epimerase%3B~IMG reference gene:2504920071~PFAM: Aldose 1-epimerase gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1182 Trebr_1183 Trebr_1183 Trebr_1183 1404280 1404912 + V-type ATP synthase subunit E KEGG: tde:TDE1381 V-type ATP synthase subunit E~SPTR: V-type ATP synthase subunit E%3B~IMG reference gene:2504920072 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1183 Trebr_1184 Trebr_1184 Trebr_1184 1404913 1405458 + hypothetical protein KEGG: tde:TDE1380 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920073~PFAM: Protein of unknown function (DUF2764) gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1184 Trebr_1185 Trebr_1185 Trebr_1185 1405455 1407224 + V-type ATP synthase alpha chain COGs: COG1155 H+-ATPase subunit A~HAMAP: V-type ATP synthase alpha chain~InterPro IPR004100:IPR000194~KEGG: tde:TDE1683 V-type ATP synthase subunit A~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal~PRIAM: H(+)-transporting two-sector ATPase~SPTR: V-type ATP synthase alpha chain%3B~IMG reference gene:2504920074~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain%3B ATP synthase alpha/beta chain%2C C terminal domain gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1185 Trebr_1186 Trebr_1186 Trebr_1186 1407227 1408525 + V-type ATP synthase beta chain COGs: COG1156 H+-ATPase subunit B~HAMAP: V-type ATP synthase beta chain~InterPro IPR004100:IPR000194~KEGG: tde:TDE1682 V-type ATP synthase subunit B~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal~SPTR: V-type ATP synthase beta chain%3B~IMG reference gene:2504920075~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1186 Trebr_1187 Trebr_1187 Trebr_1187 1408538 1409164 + V-type ATP synthase subunit D COGs: COG1394 H+-ATPase subunit D~HAMAP: V-type ATP synthase subunit D~InterPro IPR002699~KEGG: tde:TDE1681 V-type ATP synthase subunit D~PFAM: ATPase%2C V1/A1 complex%2C subunit D~SPTR: V-type ATPase%2C D subunit%3B~TIGRFAM: ATPase%2C V1/A1 complex%2C subunit D~IMG reference gene:2504920076~PFAM: ATP synthase subunit D~TIGRFAM: H(+)-transporting ATP synthase%2C vacuolar type%2C subunit D gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1187 Trebr_1188 Trebr_1188 Trebr_1188 1409161 1411122 + V-type ATPase 116 kDa subunit COGs: COG1269 H+-ATPase subunit I~InterPro IPR002490~KEGG: tpp:TPASS_0429 V-type ATP synthase subunit I~PFAM: ATPase%2C V0/A0 complex%2C 116kDa subunit~SPTR: V-type ATP synthase subunit I 1%3B~IMG reference gene:2504920077~PFAM: V-type ATPase 116kDa subunit family gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1188 Trebr_1189 Trebr_1189 Trebr_1189 1411147 1411566 + V-type ATP synthase subunit K KEGG: tpp:TPASS_0430 V-type ATP synthase subunit K~SPTR: V-type ATP synthase subunit K%3B~IMG reference gene:2504920078~PFAM: ATP synthase subunit C gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1189 Trebr_1190 Trebr_1190 Trebr_1190 1411581 1412672 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis~HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~InterPro IPR004588~KEGG: tpp:TPASS_0446 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase~PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%3B~TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~IMG reference gene:2504920079~PFAM: GcpE protein~TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1190 Trebr_1191 Trebr_1191 Trebr_1191 1412669 1413784 + hypothetical protein KEGG: tde:TDE1264 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920080 gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1191 Trebr_1192 Trebr_1192 Trebr_1192 1413808 1415313 - hypothetical protein KEGG: tde:TDE0688 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920081 gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1192 Trebr_1193 Trebr_1193 Trebr_1193 1415313 1416761 - Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis~InterPro IPR017472:IPR017475:IPR003362~KEGG: cyn:Cyan7425_4214 undecaprenyl-phosphate galactose phosphotransferase%2C WbaP~PFAM: Bacterial sugar transferase~PRIAM: Undecaprenyl-phosphate galactose phosphotransferase~SPTR: Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP%3B~TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP%3B Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase~IMG reference gene:2504920082~PFAM: Bacterial sugar transferase~TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase%3B Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1193 Trebr_1194 Trebr_1194 Trebr_1194 1416832 1417590 - anaerobic ribonucleoside-triphosphate reductase activating protein COGs: COG1180 Pyruvate-formate lyase-activating enzyme~InterPro IPR012840:IPR007197~KEGG: tde:TDE1856 radical SAM domain-containing protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~TIGRFAM: Ribonucleoside-triphosphate reductase%2C anaerobic-like~IMG reference gene:2504920083~PFAM: Radical SAM superfamily~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1194 Trebr_1195 Trebr_1195 Trebr_1195 1417598 1418137 - anaerobic ribonucleoside-triphosphate reductase KEGG: ssm:Spirs_1454 anaerobic ribonucleoside-triphosphate reductase~SPTR: Putative anaerobic ribonucleoside-triphosphate reductase%3B~IMG reference gene:2504920084 gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1195 Trebr_1196 Trebr_1196 Trebr_1196 1418225 1420345 - anaerobic ribonucleoside-triphosphate reductase COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase~InterPro IPR012833:IPR005144~KEGG: tde:TDE1331 anaerobic ribonucleoside triphosphate reductase~PFAM: ATP-cone~SPTR: Anaerobic ribonucleoside-triphosphate reductase%3B~TIGRFAM: Ribonucleoside-triphosphate reductase%2C anaerobic~IMG reference gene:2504920085~PFAM: ATP cone domain~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1196 Trebr_1197 Trebr_1197 Trebr_1197 1420338 1420802 - Transcriptional repressor nrdR COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains~HAMAP: Transcriptional repressor nrdR~InterPro IPR003796:IPR005144~KEGG: tde:TDE1330 transcriptional regulator NrdR~PFAM: ATP-cone~SPTR: Transcriptional repressor NrdR%3B~TIGRFAM: Ribonucleotide reductase regulator NrdR-like~IMG reference gene:2504920086~PFAM: ATP cone domain~TIGRFAM: transcriptional regulator NrdR gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1197 Trebr_1198 Trebr_1198 Trebr_1198 1421039 1421728 - hypothetical protein KEGG: tde:TDE1649 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920087 gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1198 Trebr_1199 Trebr_1199 Trebr_1199 1421719 1422495 - Polyamine-transporting ATPase COGs: COG1122 ABC-type cobalt transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: tde:TDE1650 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Polyamine-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504920088~PFAM: ABC transporter gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1199 Trebr_1200 Trebr_1200 Trebr_1200 1422492 1423061 - BioY protein COGs: COG1268 conserved hypothetical protein~InterPro IPR003784~KEGG: tde:TDE1651 BioY family protein~PFAM: BioY protein~SPTR: BioY protein%3B~IMG reference gene:2504920089~PFAM: BioY family gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1200 Trebr_1201 Trebr_1201 Trebr_1201 1423114 1424829 - Apolipoprotein N-acyltransferase COGs: COG0815 Apolipoprotein N-acyltransferase~HAMAP: Apolipoprotein N-acyltransferase~InterPro IPR004563:IPR003010~KEGG: tde:TDE2299 apolipoprotein N-acyltransferase~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~SPTR: Apolipoprotein N-acyltransferase 2%3B~TIGRFAM: Apolipoprotein N-acyltransferase~IMG reference gene:2504920090~PFAM: Carbon-nitrogen hydrolase~TIGRFAM: apolipoprotein N-acyltransferase gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1201 Trebr_1202 Trebr_1202 Trebr_1202 1424892 1426067 + Galactokinase COGs: COG0153 Galactokinase~InterPro IPR019539:IPR013750~KEGG: tde:TDE2298 galactokinase%2C putative~PFAM: Galactokinase galactose-binding domain%3B GHMP kinase%2C C-terminal~PRIAM: Galactokinase~SPTR: Galactokinase%3B~IMG reference gene:2504920091~PFAM: Galactokinase galactose-binding signature gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1202 Trebr_1203 Trebr_1203 Trebr_1203 1426105 1426842 + Multifunctional protein surE COGs: COG0496 acid phosphatase~HAMAP: Multifunctional protein surE~InterPro IPR002828~KEGG: ssm:Spirs_3174 stationary-phase survival protein SurE~PFAM: Survival protein SurE-like phosphatase/nucleotidase~SPTR: 5'-nucleotidase surE%3B~TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase~IMG reference gene:2504920092~PFAM: Survival protein SurE~TIGRFAM: 5'/3'-nucleotidase SurE gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1203 Trebr_1204 Trebr_1204 Trebr_1204 1426860 1427573 + Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR001440:IPR013105~KEGG: tde:TDE2297 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SMART: Tetratricopeptide repeat~SPTR: TPR domain protein%3B~IMG reference gene:2504920093~PFAM: RNA polymerase I-associated factor PAF67%3B Tetratricopeptide repeat gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1204 Trebr_1205 Trebr_1205 Trebr_1205 1427570 1429624 + NHL repeat containing protein InterPro IPR001258~KEGG: tde:TDE2296 hypothetical protein~PFAM: NHL repeat~SPTR: Putative lipoprotein%3B~IMG reference gene:2504920094~PFAM: NHL repeat gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1205 Trebr_1206 Trebr_1206 Trebr_1206 1429657 1435674 - DNA polymerase IV COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair~HAMAP: DNA polymerase IV~InterPro IPR001126~KEGG: tde:TDE0963 DNA polymerase IV~PFAM: DNA-repair protein%2C UmuC-like~PRIAM: DNA-directed DNA polymerase~SPTR: DNA polymerase IV%3B~IMG reference gene:2504920095~PFAM: impB/mucB/samB family C-terminal%3B IMS family HHH motif%3B impB/mucB/samB family gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1206 Trebr_1207 Trebr_1207 Trebr_1207 1435671 1437698 - hypothetical protein KEGG: tde:TDE0962 hypothetical protein~SPTR: Putative membrane protein%3B~IMG reference gene:2504920096 gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1207 Trebr_1208 Trebr_1208 Trebr_1208 1437778 1438944 + hypothetical protein KEGG: tde:TDE1128 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920097 gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1208 Trebr_1209 Trebr_1209 Trebr_1209 1438951 1439652 + hypothetical protein IMG reference gene:2504920098 gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1209 Trebr_1210 Trebr_1210 Trebr_1210 1439655 1440377 + tRNA (guanine-N(7)-)-methyltransferase COGs: COG0220 S-adenosylmethionine-dependent methyltransferase~HAMAP: tRNA (guanine-N(7)-)-methyltransferase~InterPro IPR003358~KEGG: tde:TDE1130 methyltransferase%2C putative~PFAM: tRNA (guanine-N-7) methyltransferase~SPTR: tRNA (guanine-N(7)-)-methyltransferase%3B~TIGRFAM: tRNA (guanine-N-7) methyltransferase~IMG reference gene:2504920099~PFAM: Putative methyltransferase~TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1210 Trebr_1211 Trebr_1211 Trebr_1211 1440379 1442319 + DNA ligase COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)~HAMAP: DNA ligase~InterProIPR001679:IPR013840:IPR001357:IPR013839:IPR 004150~KEGG: tde:TDE1538 DNA ligase%2C NAD-dependent~PFAM: NAD-dependent DNA ligase%2C adenylation%3B NAD-dependent DNA ligase%2C OB-fold%3B BRCT~SMART: NAD-dependent DNA ligase%2C N-terminal%3B BRCT~SPTR: DNA ligase%2C NAD-dependent%3B~TIGRFAM: NAD-dependent DNA ligase~IMG reference gene:2504920100~PFAM: NAD-dependent DNA ligase OB-fold domain%3B NAD-dependent DNA ligase adenylation domain%3B BRCA1 C Terminus (BRCT) domain~TIGRFAM: DNA ligase%2C NAD-dependent gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1211 Trebr_1212 Trebr_1212 Trebr_1212 1442319 1442939 + hypothetical protein IMG reference gene:2504920101 gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1212 Trebr_1213 Trebr_1213 Trebr_1213 1442916 1443926 - Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047~KEGG: tde:TDE2189 M23/M37 peptidase domain-containing protein~PFAM: Peptidase M23~SPTR: M23/M37 peptidase domain protein%3B~IMG reference gene:2504920102~PFAM: Peptidase family M23 gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1213 Trebr_1214 Trebr_1214 Trebr_1214 1444368 1444757 + hypothetical protein KEGG: mtt:Ftrac_0842 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920104~PFAM: Protein of unknown function (DUF2721) gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1214 Trebr_1215 Trebr_1215 Trebr_1215 1444853 1445062 + FeoA family protein InterPro IPR007167~KEGG: csh:Closa_0962 FeoA family protein~PFAM: Ferrous iron transporter%2C FeoA subunit~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920105~PFAM: FeoA domain gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1215 Trebr_1216 Trebr_1216 Trebr_1216 1445076 1445294 + FeoA family protein COGs: COG1918 Fe2+ transport system protein A~InterPro IPR007167~KEGG: eel:EUBELI_00573 ferrous iron transport protein A~PFAM: Ferrous iron transporter%2C FeoA subunit~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920106~PFAM: FeoA domain gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1216 Trebr_1217 Trebr_1217 Trebr_1217 1445345 1447489 + ferrous iron transport protein B COGs: COG0370 Fe2+ transport system protein B~InterProIPR005225:IPR003373:IPR002917:IPR011619:IPR 011642:IPR011640~KEGG: csh:Closa_0964 ferrous iron transport protein B~PFAM: Ferrous iron transport protein B%2C N-terminal%3B GTP-binding protein%2C HSR1-related%3B Nucleoside recognition%3B Ferrous iron transport protein B%2C C-terminal~SPTR: Ferrous iron transport protein B%3B~TIGRFAM: Ferrous iron transport protein B%3B Small GTP-binding protein~IMG reference gene:2504920107~PFAM: Ferrous iron transport protein B%3B Ferrous iron transport protein B C terminus%3B Nucleoside recognition~TIGRFAM: ferrous iron transporter FeoB%3B small GTP-binding protein domain gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1217 Trebr_1218 Trebr_1218 Trebr_1218 1447559 1447717 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920108 gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1218 Trebr_1219 Trebr_1219 Trebr_1219 1447802 1448380 + hypothetical protein KEGG: csh:Closa_2904 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920109 gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1219 Trebr_1220 Trebr_1220 Trebr_1220 1448392 1448820 + flavodoxin COGs: COG0716 Flavodoxins~InterPro IPR010087:IPR008254~KEGG: ckr:CKR_1900 flavodoxin~PFAM: Flavodoxin/nitric oxide synthase~SPTR: Flavodoxin%2C short chain%3B~TIGRFAM: Flavodoxin%2C short chain~IMG reference gene:2504920110~PFAM: Flavodoxin~TIGRFAM: flavodoxin%2C short chain gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1220 Trebr_1221 Trebr_1221 Trebr_1221 1448996 1450105 + ABC-type transporter%2C periplasmic subunit COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component~InterPro IPR002491~KEGG: mla:Mlab_1044 hypothetical protein~PFAM: Periplasmic binding protein~SPTR: Periplasmic binding protein%3B~IMG reference gene:2504920111~PFAM: Periplasmic binding protein gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1221 Trebr_1222 Trebr_1222 Trebr_1222 1450118 1451011 + Nitrogenase COGs: COG1348 Nitrogenase subunit NifH (ATPase)~InterPro IPR000392~KEGG: aoe:Clos_0309 nitrogenase~PFAM: Nitrogenase iron protein%2C subunit NifH/Protochlorophyllide reductase%2C subunit ChlL~PRIAM: Nitrogenase~SPTR: Nitrogenase iron protein (Nitrogenase component II)(Nitrogenase Fe protein) (Nitrogenase reductase)%3B~IMG reference gene:2504920112~PFAM: 4Fe-4S iron sulfur cluster binding proteins%2C NifH/frxC family~TIGRFAM: nitrogenase iron protein gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1222 Trebr_1223 Trebr_1223 Trebr_1223 1451008 1452282 + nitrogenase molybdenum-iron protein alpha and beta chains-like protein KEGG: rpx:Rpdx1_2419 nitrogenase molybdenum-iron protein alpha and beta chains-like protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920113~PFAM: Nitrogenase component 1 type Oxidoreductase gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1223 Trebr_1224 Trebr_1224 Trebr_1224 1452279 1453496 + oxidoreductase/nitrogenase component 1 COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains~InterPro IPR000510~KEGG: dhd:Dhaf_1540 hypothetical protein~PFAM: Nitrogenase/oxidoreductase%2C component 1~SPTR: Oxidoreductase%2C nitrogenase component 1 family protein%3B~IMG reference gene:2504920114~PFAM: Nitrogenase component 1 type Oxidoreductase gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1224 Trebr_1225 Trebr_1225 Trebr_1225 1453507 1454613 + ABC-type transporter%2C periplasmic subunit COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component~InterPro IPR002491~KEGG: mla:Mlab_1044 hypothetical protein~PFAM: Periplasmic binding protein~SPTR: Periplasmic binding protein%3B~IMG reference gene:2504920115~PFAM: Periplasmic binding protein gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1225 Trebr_1226 Trebr_1226 Trebr_1226 1454615 1455634 + ABC-type transporter%2C integral membrane subunit COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component~InterPro IPR000522~KEGG: mla:Mlab_1043 hypothetical protein~PFAM: Bacterial transport system permease protein~SPTR: Iron(III) dicitrate transport ATP-binding protein fecE%3B~IMG reference gene:2504920116~PFAM: FecCD transport family gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1226 Trebr_1227 Trebr_1227 Trebr_1227 1455631 1456416 + Phosphonate-transporting ATPase COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR003593:IPR003439~KEGG: mla:Mlab_1042 hypothetical protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Hemin import ATP-binding protein HmuV%3B~IMG reference gene:2504920117~PFAM: ABC transporter gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1227 Trebr_1228 Trebr_1228 Trebr_1228 1456548 1458104 + two component transcriptional regulator%2C AraC family COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789:IPR018060:IPR000005~KEGG: ssm:Spirs_2649 two component transcriptional regulator%2C AraC family~PFAM: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain%3B Signal transduction response regulator%2C receiver region~SPTR: Two component transcriptional regulator%2C AraC family%3B~IMG reference gene:2504920118~PFAM: Response regulator receiver domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1228 Trebr_1229 Trebr_1229 Trebr_1229 1458079 1459128 + integral membrane sensor signal transduction histidine kinase COGs: COG2972 signal transduction protein with a C-terminal ATPase domain~InterPro IPR003594:IPR010559~KEGG: ssm:Spirs_2648 integral membrane sensor signal transduction histidine kinase~PFAM: Signal transduction histidine kinase%2C internal region%3B ATP-binding region%2C ATPase-like~SMART: ATP-binding region%2C ATPase-like~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504920119~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1229 Trebr_1230 Trebr_1230 Trebr_1230 1459125 1460579 + monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~KEGG: ssm:Spirs_2647 monosaccharide-transporting ATPase~SPTR: Monosaccharide-transporting ATPase%3B~IMG reference gene:2504920120 gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1230 Trebr_1231 Trebr_1231 Trebr_1231 1460679 1462184 + Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: ssm:Spirs_2646 ABC transporter related protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Monosaccharide ABC transporter ATP-binding protein%2C CUT2 family (TC 3.A.1.2.-)%3B~IMG reference gene:2504920121~PFAM: ABC transporter gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1231 Trebr_1232 Trebr_1232 Trebr_1232 1462187 1463191 + ABC-type transporter%2C integral membrane subunit COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components~InterPro IPR001851~KEGG: csh:Closa_1913 inner-membrane translocator~PFAM: Bacterial inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2504920122~PFAM: Branched-chain amino acid transport system / permease component gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1232 Trebr_1233 Trebr_1233 Trebr_1233 1463316 1464233 + periplasmic binding protein/LacI transcriptional regulator COGs: COG1879 ABC-type sugar transport system periplasmic component~InterPro IPR001761~KEGG: csh:Closa_1914 periplasmic binding protein/LacI transcriptional regulator~PFAM: Periplasmic binding protein/LacI transcriptional regulator~SPTR: Periplasmic binding protein/LacI transcriptional regulator%3B~IMG reference gene:2504920123~PFAM: family gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1233 Trebr_1234 Trebr_1234 Trebr_1234 1464740 1466572 + cell wall/surface repeat protein InterPro IPR013378~PFAM: Listeria/Bacterioides repeat~SPTR: Putative lipoprotein%3B~TIGRFAM: Listeria/Bacterioides repeat~IMG reference gene:2504920124~PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt)~TIGRFAM: Listeria/Bacterioides repeat gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1234 Trebr_1235 Trebr_1235 Trebr_1235 1466589 1467905 + hypothetical protein IMG reference gene:2504920125 gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1235 Trebr_1236 Trebr_1236 Trebr_1236 1468030 1468890 + Thioredoxin-disulfide reductase COGs: COG0492 Thioredoxin reductase~InterPro IPR013027~KEGG: cbt:CLH_2952 pyridine nucleotide-disulphide oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PRIAM: Thioredoxin-disulfide reductase~SPTR: Thioredoxin reductase%3B~IMG reference gene:2504920126~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1236 Trebr_1237 Trebr_1237 Trebr_1237 1468926 1470314 - hypothetical protein KEGG: fsu:Fisuc_0005 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920127 gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1237 Trebr_1238 Trebr_1238 Trebr_1238 1470323 1471159 - hypothetical protein KEGG: fsu:Fisuc_0003 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920128~PFAM: Protein of unknown function (DUF1329) gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1238 Trebr_1239 Trebr_1239 Trebr_1239 1471189 1473582 - exporter of the RND superfamily protein-like protein COGs: COG1033 exporter of the RND superfamily protein~KEGG: fsu:Fisuc_1684 exporter of the RND superfamily protein-like protein~SPTR: Exporter of the RND superfamily protein-like protein%3B~IMG reference gene:2504920129~PFAM: MMPL family%3B AcrB/AcrD/AcrF family gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1239 Trebr_1240 Trebr_1240 Trebr_1240 1473779 1474435 + regulatory protein TetR InterPro IPR001647~KEGG: tde:TDE1601 TetR family transcriptional regulator~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920130~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1240 Trebr_1241 Trebr_1241 Trebr_1241 1474453 1475232 + zinc/iron permease COGs: COG0428 divalent heavy-metal cations transporter~InterPro IPR003689~KEGG: cpy:Cphy_0713 zinc/iron permease~PFAM: Zinc/iron permease~SPTR: Zinc/iron permease%3B~IMG reference gene:2504920131~PFAM: ZIP Zinc transporter gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1241 Trebr_1242 Trebr_1242 Trebr_1242 1475249 1476151 + transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847~KEGG: gym:GYMC10_4684 transcriptional regulator%2C LysR family~PFAM: HTH transcriptional regulator%2C LysR~SPTR: Regulatory protein%3B~IMG reference gene:2504920132~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family%3B LysR substrate binding domain gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1242 Trebr_1243 Trebr_1243 Trebr_1243 1476243 1478552 + 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase COGs: COG0620 Methionine synthase II (cobalamin-independent)~HAMAP:5-methyltetrahydropteroyltriglutamate--homocy steineS-methyltransferase~InterPro IPR006276:IPR013215:IPR002629~KEGG: lba:Lebu_0514 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase~PFAM: Methionine synthase%2C vitamin-B12 independent%3B Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal~PRIAM:5-methyltetrahydropteroyltriglutamate--homocy steineS-methyltransferase~SPTR: Putative uncharacterized protein%3B~TIGRFAM:5-methyltetrahydropteroyltriglutamate--homo cysteineS-methyltransferase~IMG reference gene:2504920133~PFAM: Cobalamin-independent synthase%2C Catalytic domain%3B Cobalamin-independent synthase%2C N-terminal domain~TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1243 Trebr_1244 Trebr_1244 Trebr_1244 1478549 1479436 + 5%2C10-methylenetetrahydrofolate reductase COGs: COG0685 5 10-methylenetetrahydrofolate reductase~InterPro IPR003171:IPR004620~KEGG: ere:EUBREC_2200 5%2C10-methylenetetrahydrofolate reductase~PFAM: Methylenetetrahydrofolate reductase~PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H)~SPTR: Methylenetetrahydrofolate reductase%3B~TIGRFAM: 5%2C10-methylenetetrahydrofolate reductase~IMG reference gene:2504920134~PFAM: Methylenetetrahydrofolate reductase~TIGRFAM: 5%2C10-methylenetetrahydrofolate reductase%2C prokaryotic form gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1244 Trebr_1245 Trebr_1245 Trebr_1245 1479593 1480021 + ferric uptake regulator%2C Fur family COGs: COG0735 Fe2+/Zn2+ uptake regulation protein~InterPro IPR002481~KEGG: shi:Shel_19320 Fe2+/Zn2+ uptake regulation protein~PFAM: Ferric-uptake regulator~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920135~PFAM: Ferric uptake regulator family gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1245 Trebr_1246 Trebr_1246 Trebr_1246 1480018 1480299 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920136 gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1246 Trebr_1247 Trebr_1247 Trebr_1247 1480362 1481378 + ABC-type metal ion transporter%2C periplasmic subunit COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006127~KEGG: elm:ELI_0565 periplasmic solute binding protein~PFAM: ABC transporter metal-binding lipoprotein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920137~PFAM: Periplasmic solute binding protein family gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1247 Trebr_1248 Trebr_1248 Trebr_1248 1481399 1482124 + Phosphonate-transporting ATPase COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component~InterPro IPR003593:IPR003439~KEGG: elm:ELI_0566 hypothetical protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920138~PFAM: ABC transporter gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1248 Trebr_1249 Trebr_1249 Trebr_1249 1482121 1482966 + ABC-type transporter%2C integral membrane subunit COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components~InterPro IPR001626~KEGG: elm:ELI_0567 ABC-3 protein~PFAM: ABC-3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920139~PFAM: ABC 3 transport family gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1249 Trebr_1250 Trebr_1250 Trebr_1250 1482963 1483682 + hypothetical protein KEGG: brm:Bmur_0595 hypothetical protein~SPTR: Predicted protein%3B~IMG reference gene:2504920140 gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1250 Trebr_1251 Trebr_1251 Trebr_1251 1483804 1483950 + hypothetical protein IMG reference gene:2504920141 gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1251 Trebr_1252 Trebr_1252 Trebr_1252 1483982 1484452 + Deoxyuridine 5'-triphosphate nucleotidohydrolase COGs: COG0756 dUTPase~HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase~InterPro IPR008180:IPR008181~KEGG: cak:Caul_5069 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut~PFAM: DeoxyUTP pyrophosphatase domain~PRIAM: dUTP diphosphatase~SPTR: Deoxyuridine 5'-triphosphate nucleotidohydrolase%3B~TIGRFAM: DeoxyUTP pyrophosphatase domain%2C subfamily 1%2C~manually curated~IMG reference gene:2504920142~PFAM: dUTPase~TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1252 Trebr_1253 Trebr_1253 Trebr_1253 1484449 1485594 + permease YjgP/YjgQ family protein COGs: COG0795 permease~InterPro IPR005495~KEGG: tde:TDE1043 hypothetical protein~PFAM: Permease YjgP/YjgQ%2C predicted~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504920143~PFAM: Predicted permease YjgP/YjgQ family gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1253 Trebr_1254 Trebr_1254 Trebr_1254 1485561 1486661 + permease YjgP/YjgQ family protein COGs: COG0795 permease~InterPro IPR005495~KEGG: tde:TDE1044 hypothetical protein~PFAM: Permease YjgP/YjgQ%2C predicted~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504920144~PFAM: Predicted permease YjgP/YjgQ family gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1254 Trebr_1255 Trebr_1255 Trebr_1255 1486754 1487902 + Queuine tRNA-ribosyltransferase COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase~HAMAP: Queuine tRNA-ribosyltransferase~InterPro IPR004803:IPR002616~KEGG: tde:TDE0438 queuine tRNA-ribosyltransferase~PFAM: Queuine/other tRNA-ribosyltransferase~PRIAM: tRNA-guanine transglycosylase~SPTR: Queuine tRNA-ribosyltransferase%3B~TIGRFAM: Queuine tRNA-ribosyltransferase%3B Queuine/other tRNA-ribosyltransferase~IMG reference gene:2504920145~PFAM: Queuine tRNA-ribosyltransferase~TIGRFAM: tRNA-guanine transglycosylases%2C various specificities%3B tRNA-guanine transglycosylase%2C queuosine-34-forming gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1255 Trebr_1256 Trebr_1256 Trebr_1256 1487899 1489305 + PBS lyase HEAT domain protein repeat-containing protein InterPro IPR004155~KEGG: tde:TDE0437 heat repeat-containing PBS lyase~PFAM: PBS lyase HEAT-like repeat~SPTR: PBS lyase HEAT-like repeat domain protein%3B~IMG reference gene:2504920146~PFAM: PBS lyase HEAT-like repeat gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1256 Trebr_1257 Trebr_1257 Trebr_1257 1489351 1489836 + CheW protein COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545~KEGG: tpp:TPASS_0439 purine-binding chemotaxis protein~PFAM: CheW-like protein~SMART: CheW-like protein~SPTR: Purine-binding chemotaxis protein%3B~IMG reference gene:2504920147~PFAM: CheW-like domain gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1257 Trebr_1258 Trebr_1258 Trebr_1258 1489838 1490890 + DegT/DnrJ/EryC1/StrS aminotransferase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653~KEGG: tde:TDE1590 aminotransferase~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: Aminotransferase%2C DegT/DnrJ/EryC1/StrS family%3B~IMG reference gene:2504920148~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1258 Trebr_1259 Trebr_1259 Trebr_1259 1490916 1491758 + inorganic polyphosphate/ATP-NAD kinase COGs: COG0061 sugar kinase~HAMAP: inorganic polyphosphate/ATP-NAD kinase~InterPro IPR002504~KEGG: tde:TDE1591 inorganic polyphosphate/ATP-NAD kinase%2C putative~PFAM: ATP-NAD/AcoX kinase~SPTR: Probable inorganic polyphosphate/ATP-NAD kinase%3B~IMG reference gene:2504920149~PFAM: ATP-NAD kinase gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1259 Trebr_1260 Trebr_1260 Trebr_1260 1491751 1493499 + DNA repair protein RecN COGs: COG0497 ATPase involved in DNA repair~InterPro IPR003593:IPR003395:IPR004604~KEGG: tde:TDE1301 DNA repair protein RecN~PFAM: RecF/RecN/SMC protein%2C N-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: DNA repair protein RecN%3B~TIGRFAM: DNA recombination/repair protein RecN~IMG reference gene:2504920150~PFAM: RecF/RecN/SMC N terminal domain~TIGRFAM: DNA repair protein RecN gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1260 Trebr_1261 Trebr_1261 Trebr_1261 1493481 1494284 + hypothetical protein KEGG: tde:TDE1300 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920151 gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1261 Trebr_1262 Trebr_1262 Trebr_1262 1494436 1495539 + basic membrane lipoprotein COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein~InterPro IPR003760~KEGG: sta:STHERM_c17750 putative membrane lipoprotein TmpC precursor~PFAM: Basic membrane lipoprotein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920152~PFAM: Basic membrane protein gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1262 Trebr_1263 Trebr_1263 Trebr_1263 1495661 1497199 + Monosaccharide-transporting ATPase COGs: COG3845 ABC-type uncharacterized transport systems ATPase components~InterPro IPR003593:IPR003439~KEGG: aoe:Clos_0964 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~IMG reference gene:2504920153~PFAM: ABC transporter gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1263 Trebr_1264 Trebr_1264 Trebr_1264 1497199 1498344 + ABC-type transporter%2C integral membrane subunit COGs: COG4603 ABC-type uncharacterized transport system permease component~InterPro IPR001851~KEGG: sta:STHERM_c17730 putative permease~PFAM: Bacterial inner-membrane translocator~SPTR: Carbohydrate uptake 2 (CUT2) family%2C permease protein%3B~IMG reference gene:2504920154~PFAM: Branched-chain amino acid transport system / permease component gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1264 Trebr_1265 Trebr_1265 Trebr_1265 1498346 1499251 + ABC-type transporter%2C integral membrane subunit COGs: COG1079 ABC-type transport system permease component~InterPro IPR001851~KEGG: amt:Amet_3583 inner-membrane translocator~PFAM: Bacterial inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2504920155~PFAM: Branched-chain amino acid transport system / permease component gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1265 Trebr_1266 Trebr_1266 Trebr_1266 1499356 1500468 + Glycerol-3-phosphate-transporting ATPase COGs: COG3839 ABC-type sugar transport systems ATPase components~InterPro IPR003593:IPR003439:IPR013611~KEGG: ssm:Spirs_0579 ABC transporter related protein~PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~PRIAM: Glycerol-3-phosphate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Multiple sugar-binding transport ATP-binding protein MsmK%3B~IMG reference gene:2504920156~PFAM: ABC transporter%3B TOBE domain gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1266 Trebr_1267 Trebr_1267 Trebr_1267 1500609 1502528 - ribonuclease II COGs: COG0557 Exoribonuclease R~InterPro IPR001900~KEGG: tde:TDE1371 RNB-like family protein~PFAM: Ribonuclease II/R~SPTR: Exoribonuclease II%3B~IMG reference gene:2504920157~PFAM: RNB domain gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1267 Trebr_1268 Trebr_1268 Trebr_1268 1502638 1504206 - beta-lactamase COGs: COG1680 Beta-lactamase class C and other penicillin binding protein~InterPro IPR001466:IPR005180~KEGG: bfr:BF3534 putative peptidase~PFAM: Beta-lactamase-related%3B Protein of unknown function DUF302~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920158~PFAM: Domain of unknown function DUF302%3B Beta-lactamase gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1268 Trebr_1269 Trebr_1269 Trebr_1269 1505131 1505556 + peptidase A24A prepilin type IV InterPro IPR000045~KEGG: syn:slr1120 type 4 prepilin peptidase~PFAM: Peptidase A24A%2C prepilin type IV~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920161~PFAM: Type IV leader peptidase family gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1269 Trebr_1270 Trebr_1270 Trebr_1270 1505546 1505761 - pseudogene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1270 Trebr_1271 Trebr_1271 Trebr_1271 1506204 1507103 + hypothetical protein IMG reference gene:2504920163 gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1271 Trebr_1272 Trebr_1272 Trebr_1272 1507382 1508359 + hypothetical protein IMG reference gene:2504920164 gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1272 Trebr_1273 Trebr_1273 Trebr_1273 1508359 1509558 + hypothetical protein KEGG: sta:STHERM_c19940 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920165 gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1273 Trebr_1274 Trebr_1274 Trebr_1274 1509678 1510208 + metal-dependent phosphohydrolase HD sub domain protein InterPro IPR006674~KEGG: mla:Mlab_1526 hypothetical protein~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SPTR: Putative phosphohydrolase%3B~IMG reference gene:2504920166 gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1274 Trebr_1275 Trebr_1275 Trebr_1275 1510157 1511524 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: has:Halsa_1701 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: MATE efflux family protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504920167~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1275 Trebr_1276 Trebr_1276 Trebr_1276 1511541 1512491 - ROK family protein COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000600~KEGG: cdl:CDR20291_1482 putative sugar metabolism repressor~PFAM: ROK~SPTR: ROK family protein%3B~IMG reference gene:2504920168~PFAM: ROK family gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1276 Trebr_1277 Trebr_1277 Trebr_1277 1512635 1513708 + lysine 2%2C3-aminomutase YodO family protein COGs: COG1509 Lysine 2 3-aminomutase~InterPro IPR007197:IPR003739~KEGG: tde:TDE0069 hypothetical protein~PFAM: Radical SAM~PRIAM: Lysine 2%2C3-aminomutase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Protein of unknown function DUF160~IMG reference gene:2504920169~PFAM: Radical SAM superfamily~TIGRFAM: KamA family protein gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1277 Trebr_1278 Trebr_1278 Trebr_1278 1513928 1514737 + RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284~KEGG: ssm:Spirs_1794 RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma-70 region 3%3B RNA polymerase sigma-70 region 4~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504920170~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1278 Trebr_1279 Trebr_1279 Trebr_1279 1514818 1516083 + Argininosuccinate synthase COGs: COG0137 Argininosuccinate synthase~HAMAP: Argininosuccinate synthase~InterPro IPR001518~KEGG: brm:Bmur_1049 argininosuccinate synthase~PFAM: Argininosuccinate synthase~PRIAM: Argininosuccinate synthase~SPTR: Argininosuccinate synthase%3B~TIGRFAM: Argininosuccinate synthase~IMG reference gene:2504920171~PFAM: Arginosuccinate synthase~TIGRFAM: argininosuccinate synthase gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1279 Trebr_1280 Trebr_1280 Trebr_1280 1516181 1518688 + aspartate kinase COGs: COG0527 Aspartokinase~InterProIPR001048:IPR002912:IPR005106:IPR001342:IPR 001341~KEGG: aspartate kinase~PFAM: Homoserine dehydrogenase%2C catalytic%3B Aspartate/glutamate/uridylate kinase%3B Amino acid-binding ACT%3B Aspartate/homoserine dehydrogenase%2C NAD-binding~SPTR: Aspartokinase i-homoserine dehydrogenase i%3B~TIGRFAM: Aspartate kinase region~IMG reference gene:2504920172~PFAM: Homoserine dehydrogenase%3B Homoserine dehydrogenase%2C NAD binding domain%3B ACT domain%3B Amino acid kinase family~TIGRFAM: aspartate kinase gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1280 Trebr_1281 Trebr_1281 Trebr_1281 1518726 1520711 + phospho-2-dehydro-3-deoxyheptonate aldolase COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase~InterPro IPR006218:IPR001086:IPR006268~KEGG: sta:STHERM_c18910 hypothetical protein~PFAM: DAHP synthetase I/KDSA%3B Prephenate dehydratase~PRIAM: 3-deoxy-7-phosphoheptulonate synthase.%2C Prephenate dehydratase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase%2C subtype 2~IMG reference gene:2504920173~PFAM: Prephenate dehydratase%3B DAHP synthetase I family~TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1281 Trebr_1282 Trebr_1282 Trebr_1282 1520712 1521203 + acetolactate synthase%2C small subunit COGs: COG0440 Acetolactate synthase small (regulatory) subunit~InterPro IPR002912:IPR019455:IPR004789~KEGG: cob:COB47_0453 acetolactate synthase%2C small subunit~PFAM: Acetolactate synthase%2C small subunit%2C C-terminal%3B Amino acid-binding ACT~SPTR: Acetolactate synthase%2C small subunit%3B~TIGRFAM: Acetolactate synthase%2C small subunit~IMG reference gene:2504920174~PFAM: Small subunit of acetolactate synthase%3B ACT domain~TIGRFAM: acetolactate synthase%2C small subunit gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1282 Trebr_1283 Trebr_1283 Trebr_1283 1521207 1522364 + major facilitator superfamily MFS_1 InterPro IPR011701~KEGG: rca:Rcas_0526 major facilitator transporter~PFAM: Major facilitator superfamily MFS-1~SPTR: MFS_1%2C major facilitator family%3B~IMG reference gene:2504920175~PFAM: Nucleoside H+ symporter gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1283 Trebr_1284 Trebr_1284 Trebr_1284 1522358 1523098 + protein of unknown function DUF554 COGs: COG1811 Uncharacterized membrane protein possible Na+ channel or pump~InterPro IPR007563~KEGG: ssm:Spirs_0939 protein of unknown function DUF554~PFAM: Protein of unknown function DUF554~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920176~PFAM: Protein of unknown function (DUF554) gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1284 Trebr_1285 Trebr_1285 Trebr_1285 1523150 1524502 - protein of unknown function DUF763 COGs: COG1415 conserved hypothetical protein~InterPro IPR008482~KEGG: sus:Acid_7730 hypothetical protein~PFAM: Protein of unknown function DUF763~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920177~PFAM: Protein of unknown function (DUF763) gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1285 Trebr_1286 Trebr_1286 Trebr_1286 1524734 1526566 + DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterPro IPR014001:IPR001650:IPR011545~KEGG: ssm:Spirs_3800 DEAD/DEAH box helicase domain protein~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: ATP-dependent RNA helicase DbpA%3B~IMG reference gene:2504920178~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1286 Trebr_1287 Trebr_1287 Trebr_1287 1526573 1528210 + ABC transporter related protein COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains~InterPro IPR003593:IPR003439~KEGG: tde:TDE1592 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504920179~PFAM: ABC transporter gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1287 Trebr_1288 Trebr_1288 Trebr_1288 1528388 1530442 + methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR003660~KEGG: ssm:Spirs_3480 methyl-accepting chemotaxis sensory transducer with cache sensor~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer with Cache sensor%3B~IMG reference gene:2504920180~PFAM: HAMP domain%3B Cache domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1288 Trebr_1289 Trebr_1289 Trebr_1289 1530467 1532140 - hypothetical protein KEGG: hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920181 gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1289 Trebr_1290 Trebr_1290 Trebr_1290 1532281 1533207 + Ribonuclease Z COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III~HAMAP: Ribonuclease Z~InterPro IPR013471~KEGG: tde:TDE1951 ribonuclease Z~SPTR: Ribonuclease Z%3B~TIGRFAM: Ribonuclease Z~manually curated~IMG reference gene:2504920182~PFAM: Metallo-beta-lactamase superfamily~TIGRFAM: ribonuclease Z gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1290 Trebr_1291 Trebr_1291 Trebr_1291 1533261 1534016 + Sulfate-transporting ATPase COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: npu:Npun_F0551 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Sulfate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%2C putative%3B~IMG reference gene:2504920183~PFAM: ABC transporter gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1291 Trebr_1292 Trebr_1292 Trebr_1292 1534009 1534767 + ABC transporter permease KEGG: pau:PA14_11610 ABC transporter permease~SPTR: Possible ABC transporter permease component%3B~IMG reference gene:2504920184 gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1292 Trebr_1293 Trebr_1293 Trebr_1293 1534764 1536407 + ABC-type uncharacterized transport system COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component~InterPro IPR019196~KEGG: tde:TDE2112 hypothetical protein~PFAM: ABC-type uncharacterised transport system~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920185~PFAM: ABC-type uncharacterized transport system gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1293 Trebr_1294 Trebr_1294 Trebr_1294 1536400 1537401 + hypothetical protein IMG reference gene:2504920186 gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1294 Trebr_1295 Trebr_1295 Trebr_1295 1537388 1538038 - Abortive infection protein InterPro IPR003675~KEGG: tde:TDE1317 hypothetical protein~PFAM: Abortive infection protein~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504920187~PFAM: CAAX amino terminal protease family gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1295 Trebr_1296 Trebr_1296 Trebr_1296 1538073 1539182 + type IV pilus assembly PilZ InterPro IPR009875~KEGG: ssm:Spirs_1505 type IV pilus assembly PilZ~PFAM: Type IV pilus assembly PilZ~SPTR: Type IV pilus assembly PilZ%3B~IMG reference gene:2504920188~PFAM: PilZ domain gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1296 Trebr_1297 Trebr_1297 Trebr_1297 1539217 1540416 + hypothetical protein KEGG: ssm:Spirs_1506 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920189 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1297 Trebr_1298 Trebr_1298 Trebr_1298 1540410 1541741 + ComEC/Rec2-related protein COGs: COG0658 membrane metal-binding protein~InterPro IPR004477~KEGG: tde:TDE1320 ComEC/Rec2-related protein~PFAM: ComEC/Rec2-related protein~SPTR: ComEC/Rec2-related protein%3B~TIGRFAM: ComEC/Rec2-related protein~IMG reference gene:2504920190~PFAM: Competence protein~TIGRFAM: ComEC/Rec2-related protein gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1298 Trebr_1299 Trebr_1299 Trebr_1299 1541741 1542625 + Ribosomal RNA small subunit methyltransferase A COGs: COG0030 Dimethyladenosine transferase (rRNA methylation)~HAMAP: Ribosomal RNA adenine dimethylase~InterPro IPR020598:IPR011530:IPR001737~KEGG: tde:TDE1080 dimethyladenosine transferase~PFAM: Ribosomal RNA adenine methylase transferase~SMART: Ribosomal RNA adenine methylase transferase%2C N-terminal~SPTR: Ribosomal RNA small subunit methyltransferase A%3B~TIGRFAM: Ribosomal RNA adenine dimethylase~IMG reference gene:2504920191~PFAM: Ribosomal RNA adenine dimethylase~TIGRFAM: dimethyladenosine transferase gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1299 Trebr_1300 Trebr_1300 Trebr_1300 1542630 1543331 + protein of unknown function UPF0001 COGs: COG0325 enzyme with a TIM-barrel fold~InterPro IPR001608:IPR011078~KEGG: sta:STHERM_c17100 putative pyridoxal 5'-phosphate-dependent enzyme~PFAM: Alanine racemase%2C N-terminal~SPTR: Predicted pyridoxal 5'-phosphate-dependent enzyme%3B~TIGRFAM: pyridoxal phosphate-dependent enzyme%2C YBL036C type~IMG reference gene:2504920192~PFAM: Alanine racemase%2C N-terminal domain~TIGRFAM: pyridoxal phosphate enzyme%2C YggS family gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1300 Trebr_1301 Trebr_1301 Trebr_1301 1543328 1543867 + hypothetical protein KEGG: tde:TDE1081 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920193 gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1301 Trebr_1302 Trebr_1302 Trebr_1302 1543867 1544823 + pseudouridine synthase%2C RluA family COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145:IPR006225~KEGG: sta:STHERM_c17080 ribosomal large subunit pseudouridine synthase D~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Ribosomal large subunit pseudouridine synthase D%3B~TIGRFAM: Pseudouridine synthase%2C RluC/RluD~IMG reference gene:2504920194~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1302 Trebr_1303 Trebr_1303 Trebr_1303 1544805 1545602 + pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: tde:TDE1083 RNA pseudouridylate synthase~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504920195~PFAM: RNA pseudouridylate synthase gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1303 Trebr_1304 Trebr_1304 Trebr_1304 1545652 1546668 + extracellular solute-binding protein family 1 COGs: COG1840 ABC-type Fe3+ transport system periplasmic component~InterPro IPR006059~KEGG: sth:STH3219 iron ABC transporter substrate-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Iron ABC transporter substrate-binding protein%3B~IMG reference gene:2504920196~PFAM: Bacterial extracellular solute-binding protein gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1304 Trebr_1305 Trebr_1305 Trebr_1305 1546665 1548323 + ABC-type transporter%2C integral membrane subunit COGs: COG1178 ABC-type Fe3+ transport system permease component~InterPro IPR000515~KEGG: binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Iron(III)-transport system permease protein SfuB%3B~IMG reference gene:2504920197~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1305 Trebr_1306 Trebr_1306 Trebr_1306 1548320 1549456 + Polyamine-transporting ATPase COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003593:IPR003439:IPR013611~KEGG: bbe:BBR47_06250 ABC transporter ATP-binding protein~PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~PRIAM: Polyamine-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter ATP-binding protein%3B~IMG reference gene:2504920198~PFAM: ABC transporter gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1306 Trebr_1307 Trebr_1307 Trebr_1307 1549431 1550762 - FolC bifunctional protein COGs: COG0285 Folylpolyglutamate synthase~InterPro IPR013221:IPR004101:IPR001645~KEGG: tde:TDE1084 folylpolyglutamate synthetase%2C putative~PFAM: Mur ligase%2C C-terminal%3B Mur ligase%2C central~PRIAM: Tetrahydrofolate synthase~SPTR: Folylpolyglutamate synthetase%2C putative%3B~TIGRFAM: Folylpolyglutamate synthetase~IMG reference gene:2504920199~PFAM: Mur ligase middle domain~TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1307 Trebr_1308 Trebr_1308 Trebr_1308 1550949 1553699 - Protein translocase subunit secA COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase)~HAMAP: Protein translocase subunit secA~InterProIPR011115:IPR011130:IPR011116:IPR004027:IPR 000185~KEGG: tde:TDE1898 preprotein translocase subunit SecA~PFAM: SecA DEAD-like%3B SecA preprotein cross-linking region%3B SecA Wing/Scaffold%3B SEC-C motif~SPTR: Protein translocase subunit secA%3B~TIGRFAM: SecA protein~IMG reference gene:2504920200~PFAM: SecA DEAD-like domain%3B SecA preprotein cross-linking domain%3B SEC-C motif%3B SecA Wing and Scaffold domain~TIGRFAM: preprotein translocase%2C SecA subunit gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1308 Trebr_1309 Trebr_1309 Trebr_1309 1553787 1554995 + putative lipoprotein KEGG: tde:TDE0857 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504920201 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1309 Trebr_1310 Trebr_1310 Trebr_1310 1554998 1555561 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920202 gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1310 Trebr_1311 Trebr_1311 Trebr_1311 1555600 1556034 + hypothetical protein KEGG: sta:STHERM_c07530 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920203 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1311 Trebr_1312 Trebr_1312 Trebr_1312 1556034 1556441 + NUDIX hydrolase COGs: COG1051 ADP-ribose pyrophosphatase~InterPro IPR000086~KEGG: dap:Dacet_2915 NUDIX hydrolase~PFAM: NUDIX hydrolase domain~SPTR: CTP pyrophosphohydrolase%3B~IMG reference gene:2504920204~PFAM: NUDIX domain~TIGRFAM: mutator mutT protein gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1312 Trebr_1313 Trebr_1313 Trebr_1313 1556438 1556881 + hypothetical protein KEGG: tpp:TPASS_0069 hypothetical protein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504920205 gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1313 Trebr_1314 Trebr_1314 Trebr_1314 1556888 1557604 - protein of unknown function DUF165 COGs: COG1738 conserved hypothetical protein~InterPro IPR003744~KEGG: tde:TDE0849 hypothetical protein~PFAM: Protein of unknown function DUF165~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Protein of unknown function DUF165~IMG reference gene:2504920206~PFAM: Uncharacterized ACR%2C YhhQ family COG1738~TIGRFAM: conserved hypothetical integral membrane protein gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1314 Trebr_1315 Trebr_1315 Trebr_1315 1557772 1559775 + type II and III secretion system protein COGs: COG1450 Type II secretory pathway component PulD~InterPro IPR004846~KEGG: tde:TDE1556 hypothetical protein~PFAM: Type II/III secretion system~SPTR: Type II and III secretion system protein%3B~IMG reference gene:2504920207~PFAM: Bacterial type II and III secretion system protein gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1315 Trebr_1316 Trebr_1316 Trebr_1316 1559765 1561117 + type II secretion system protein E COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB~InterPro IPR003593:IPR001482~KEGG: hor:Hore_05970 Tfp pilus assembly protein PilB~PFAM: Type II secretion system protein E~SMART: ATPase%2C AAA+ type%2C core~SPTR: Tfp pilus assembly protein PilB%3B~IMG reference gene:2504920208~PFAM: GSPII_E N-terminal domain%3B Type II/IV secretion system protein gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1316 Trebr_1317 Trebr_1317 Trebr_1317 1561083 1562036 + Type II secretion system F domain protein COGs: COG1459 Type II secretory pathway component PulF~InterPro IPR018076~KEGG: ctu:Ctu_07380 type IV pilin biogenesis protein~PFAM: Type II secretion system F domain~SPTR: Type II secretion system protein F domain protein%3B~IMG reference gene:2504920209~PFAM: Bacterial type II secretion system protein F domain gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1317 Trebr_1318 Trebr_1318 Trebr_1318 1562036 1562473 + general secretion pathway protein G COGs: COG2165 Type II secretory pathway pseudopilin PulG~InterPro IPR012902:IPR013545:IPR010054~KEGG: gau:GAU_2075 putative general secretion pathway protein G~PFAM: Type II secretion system protein G%3B Prepilin-type cleavage/methylation%2C N-terminal~SPTR: General secretion pathway protein G%3B~TIGRFAM: General secretion pathway protein G%3B Prepilin-type cleavage/methylation%2C N-terminal~IMG reference gene:2504920210~PFAM: Bacterial type II secretion system protein G~TIGRFAM: general secretion pathway protein G%3B prepilin-type N-terminal cleavage/methylation domain gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1318 Trebr_1319 Trebr_1319 Trebr_1319 1562445 1562648 + hypothetical protein IMG reference gene:2504920211 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1319 Trebr_1320 Trebr_1320 Trebr_1320 1562635 1562967 + hypothetical protein IMG reference gene:2504920212 gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1320 Trebr_1321 Trebr_1321 Trebr_1321 1562964 1564193 + hypothetical protein IMG reference gene:2504920213 gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1321 Trebr_1322 Trebr_1322 Trebr_1322 1564217 1564837 + hypothetical protein KEGG: tde:TDE1552 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920214 gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1322 Trebr_1323 Trebr_1323 Trebr_1323 1564831 1565277 + hypothetical protein IMG reference gene:2504920215 gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1323 Trebr_1324 Trebr_1324 Trebr_1324 1565282 1567387 + peptidase C11 clostripain InterPro IPR005077~KEGG: gme:Gmet_1209 hypothetical protein~PFAM: Peptidase C11%2C clostripain~SPTR: Peptidase C11 clostripain%3B~IMG reference gene:2504920216~PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt)%3B Clostripain family gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1324 Trebr_1325 Trebr_1325 Trebr_1325 1567403 1573684 + RHS repeat-associated core domain protein COGs: COG3209 Rhs family protein~InterPro IPR006530~KEGG: hor:Hore_18610 YD repeat protein~PFAM: YD repeat~SPTR: YD repeat protein%3B~TIGRFAM: RHS repeat-associated core domain%3B YD repeat~IMG reference gene:2504920217~PFAM: RHS Repeat~TIGRFAM: RHS repeat-associated core domain%3B YD repeat (two copies) gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1325 Trebr_1326 Trebr_1326 Trebr_1326 1573695 1575104 + hypothetical protein KEGG: tde:TDE1705 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920218 gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1326 Trebr_1327 Trebr_1327 Trebr_1327 1575104 1575631 + hypothetical protein KEGG: hor:Hore_18610 YD repeat protein~SPTR: YD repeat protein%3B~IMG reference gene:2504920219 gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1327 Trebr_1328 Trebr_1328 Trebr_1328 1575676 1576167 + hypothetical protein IMG reference gene:2504920220 gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1328 Trebr_1329 Trebr_1329 Trebr_1329 1576264 1577763 + pseudogene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1329 Trebr_1330 Trebr_1330 Trebr_1330 1577845 1579086 + transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: wch:wcw_0483 transposase~PFAM: Transposase%2C mutator type~SPTR: Transposase%3B~IMG reference gene:2504920222~PFAM: Transposase%2C Mutator family gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1330 Trebr_1331 Trebr_1331 Trebr_1331 1579223 1579489 + pseudogene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1331 Trebr_1332 Trebr_1332 Trebr_1332 1579511 1580047 + hypothetical protein IMG reference gene:2504920224 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1332 Trebr_1333 Trebr_1333 Trebr_1333 1580063 1580722 + hypothetical protein IMG reference gene:2504920225 gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1333 Trebr_1334 Trebr_1334 Trebr_1334 1581033 1581378 + pseudogene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1334 Trebr_1335 Trebr_1335 Trebr_1335 1581573 1582814 + transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: wch:wcw_0483 transposase~PFAM: Transposase%2C mutator type~SPTR: Transposase%3B~IMG reference gene:2504920227~PFAM: Transposase%2C Mutator family gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1335 Trebr_1336 Trebr_1336 Trebr_1336 1583563 1584189 + hypothetical protein IMG reference gene:2504920228 gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1336 Trebr_1337 Trebr_1337 Trebr_1337 1584370 1584813 + hypothetical protein IMG reference gene:2504920229 gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1337 Trebr_1338 Trebr_1338 Trebr_1338 1584810 1585331 + hypothetical protein IMG reference gene:2504920230 gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1338 Trebr_1339 Trebr_1339 Trebr_1339 1585488 1586414 + hypothetical protein IMG reference gene:2504920231 gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1339 Trebr_1340 Trebr_1340 Trebr_1340 1586450 1587445 + regulatory protein%2C DeoR COGs: COG2378 transcriptional regulator protein~KEGG: dau:Daud_1294 regulatory protein%2C DeoR~SPTR: HTH domain family%3B~IMG reference gene:2504920232 gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1340 Trebr_1341 Trebr_1341 Trebr_1341 1587618 1588925 - Histidyl-tRNA synthetase COGs: COG0124 Histidyl-tRNA synthetase~HAMAP: Histidyl-tRNA synthetase%2C class IIa%2C subgroup~InterPro IPR015807:IPR002314:IPR004154~KEGG: tde:TDE1442 histidyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region%3B Anticodon-binding~PRIAM: Histidine--tRNA ligase~SPTR: Histidyl-tRNA synthetase%3B~TIGRFAM: Histidyl-tRNA synthetase%2C class IIa%2C subgroup~IMG reference gene:2504920233~PFAM: Anticodon binding domain%3B tRNA synthetase class II core domain (G%2C H%2C P%2C S and T)~TIGRFAM: histidyl-tRNA synthetase gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1341 Trebr_1342 Trebr_1342 Trebr_1342 1588961 1589782 + putative transcriptional acitvator%2C Baf family COGs: COG1521 Putative transcriptional regulator protein~HAMAP: Type III pantothenate kinase~InterPro IPR004619~KEGG: sli:Slin_6393 putative transcriptional acitvator%2C Baf family~PFAM: Bordetella pertussis Bvg accessory factor~PRIAM: Pantothenate kinase~SPTR: Type III pantothenate kinase 2%3B~TIGRFAM: Bordetella pertussis Bvg accessory factor~IMG reference gene:2504920234~PFAM: Bordetella pertussis Bvg accessory factor family~TIGRFAM: pantothenate kinase%2C type III gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1342 Trebr_1343 Trebr_1343 Trebr_1343 1590163 1591452 + Xanthine/uracil/vitamin C permease COGs: COG2252 Permease~InterPro IPR006043~KEGG: tde:TDE1360 xanthine/uracil permease family protein~PFAM: Xanthine/uracil/vitamin C permease~SPTR: Putative integral membrane protein%3B~IMG reference gene:2504920236~PFAM: Permease family gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1343 Trebr_1344 Trebr_1344 Trebr_1344 1591617 1592117 + CMP/dCMP deaminase zinc-binding protein COGs: COG2131 Deoxycytidylate deaminase~InterPro IPR002125~KEGG: tde:TDE2193 deoxycytidylate deaminase%2C putative~PFAM: CMP/dCMP deaminase%2C zinc-binding~SPTR: dCMP deaminase%3B~IMG reference gene:2504920237~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1344 Trebr_1345 Trebr_1345 Trebr_1345 1592166 1593578 - threonine synthase COGs: COG0498 Threonine synthase~InterPro IPR001926:IPR004450~KEGG: tde:TDE2192 threonine synthase~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~PRIAM: Threonine synthase~SPTR: Threonine synthase%2C putative%3B~TIGRFAM: Threonine synthase~IMG reference gene:2504920238~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: threonine synthase gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1345 Trebr_1346 Trebr_1346 Trebr_1346 1593705 1594775 - hypothetical protein KEGG: ssm:Spirs_3904 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920239 gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1346 Trebr_1347 Trebr_1347 Trebr_1347 1594849 1596021 + Alanine racemase COGs: COG0787 Alanine racemase~HAMAP: Alanine racemase~InterPro IPR000821:IPR001608:IPR011079~KEGG: tde:TDE1095 alanine racemase~PFAM: Alanine racemase%2C N-terminal%3B Alanine racemase%2C C-terminal~PRIAM: Alanine racemase~SPTR: Alanine racemase%3B~TIGRFAM: Alanine racemase~IMG reference gene:2504920240~PFAM: Alanine racemase%2C C-terminal domain%3B Alanine racemase%2C N-terminal domain~TIGRFAM: alanine racemase gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1347 Trebr_1348 Trebr_1348 Trebr_1348 1596063 1596953 + protein of unknown function DUF125 transmembrane COGs: COG1814 Uncharacterized membrane protein~InterPro IPR003251:IPR008217~KEGG: brm:Bmur_1173 protein of unknown function DUF125 transmembrane~PFAM: Protein of unknown function DUF125%2C transmembrane%3B Rubrerythrin~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920241~PFAM: Rubrerythrin%3B VIT family gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1348 Trebr_1349 Trebr_1349 Trebr_1349 1597314 1597544 + regulatory protein%2C FmdB family COGs: COG2331 conserved hypothetical protein~InterPro IPR013429~KEGG: tde:TDE2661 hypothetical protein~PFAM: Regulatory protein%2C FmdB%2C putative~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Regulatory protein%2C FmdB%2C putative~IMG reference gene:2504920243~PFAM: Zinc ribbon domain~TIGRFAM: putative regulatory protein%2C FmdB family gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1349 Trebr_1350 Trebr_1350 Trebr_1350 1597548 1597943 + hypothetical protein KEGG: tde:TDE2660 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920244 gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1350 Trebr_1351 Trebr_1351 Trebr_1351 1597935 1598747 - hypothetical protein KEGG: tde:TDE1088 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920245 gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1351 Trebr_1352 Trebr_1352 Trebr_1352 1598744 1599718 - hypothetical protein KEGG: tpp:TPASS_0455 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920246 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1352 Trebr_1353 Trebr_1353 Trebr_1353 1599781 1603338 + transcription-repair coupling factor COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase)~InterProIPR014001:IPR001650:IPR003711:IPR011545:IPR 005118:IPR004576~KEGG: tde:TDE1287 transcription-repair coupling factor~PFAM: Transcription factor CarD%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal%3B Transcription-repair-coupling factor~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: Transcription-repair coupling factor%3B~TIGRFAM: Transcription-repair coupling factor~IMG reference gene:2504920247~PFAM: Helicase conserved C-terminal domain%3B TRCF domain%3B CarD-like/TRCF domain%3B DEAD/DEAH box helicase~TIGRFAM: transcription-repair coupling factor (mfd) gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1353 Trebr_1354 Trebr_1354 Trebr_1354 1603368 1604009 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834:IPR006402~KEGG: aca:ACP_0419 HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: HAD-superfamily hydrolase family protein IA%2C variant 3%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~IMG reference gene:2504920248~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED%3B Epoxide hydrolase N-terminal domain-like phosphatase gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1354 Trebr_1355 Trebr_1355 Trebr_1355 1604457 1605770 - rod shape-determining protein RodA COGs: COG0772 Bacterial cell division membrane protein~InterPro IPR001182:IPR011923~KEGG: tde:TDE1353 rod shape-determining protein RodA~PFAM: Cell cycle protein~SPTR: Rod shape-determining protein RodA%3B~TIGRFAM: Rod shape-determining protein RodA~IMG reference gene:2504920249~PFAM: Cell cycle protein~TIGRFAM: rod shape-determining protein RodA gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1355 Trebr_1356 Trebr_1356 Trebr_1356 1605791 1607671 - penicillin-binding protein 2 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2~InterPro IPR005311:IPR001460:IPR017790~KEGG: tde:TDE1352 penicillin-binding protein~PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain~PRIAM: Peptidoglycan glycosyltransferase~SPTR: Penicillin-binding protein%3B~TIGRFAM: Penicillin-binding protein 2~IMG reference gene:2504920250~PFAM: Penicillin binding protein transpeptidase domain%3B Penicillin-binding Protein dimerisation domain~TIGRFAM: penicillin-binding protein 2 gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1356 Trebr_1357 Trebr_1357 Trebr_1357 1607671 1608171 - rod shape-determining protein MreD InterPro IPR007227~KEGG: tde:TDE1351 rod shape-determining protein MreD~SPTR: Rod shape-determining protein MreD%3B~TIGRFAM: Cell shape-determining protein MreD~IMG reference gene:2504920251~PFAM: rod shape-determining protein MreD~TIGRFAM: rod shape-determining protein MreD gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1357 Trebr_1358 Trebr_1358 Trebr_1358 1608168 1609019 - rod shape-determining protein MreC COGs: COG1792 Cell shape-determining protein~InterPro IPR007221:IPR005223~KEGG: tde:TDE1350 rod shape-determining protein MreC~PFAM: Rod shape-determining protein MreC~SPTR: Rod shape-determining protein MreC%3B~TIGRFAM: Rod shape-determining protein MreC%2C subtype~IMG reference gene:2504920252~PFAM: rod shape-determining protein MreC~TIGRFAM: rod shape-determining protein MreC gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1358 Trebr_1359 Trebr_1359 Trebr_1359 1609033 1610070 - cell shape determining protein%2C MreB/Mrl family COGs: COG1077 Actin-like ATPase involved in cell morphogenesis~InterPro IPR004753~KEGG: tde:TDE1349 rod shape-determining protein MreB~PFAM: Cell shape determining protein MreB/Mrl~SPTR: Rod shape-determining protein MreB%3B~TIGRFAM: Cell shape determining protein MreB/Mrl~IMG reference gene:2504920253~PFAM: MreB/Mbl protein~TIGRFAM: cell shape determining protein%2C MreB/Mrl family gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1359 Trebr_1360 Trebr_1360 Trebr_1360 1610086 1611045 - Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR001440:IPR013105~KEGG: tde:TDE1348 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504920254~PFAM: Tetratricopeptide repeat gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1360 Trebr_1361 Trebr_1361 Trebr_1361 1611500 1612354 - protein of unknown function DUF164 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding~InterPro IPR003743~KEGG: ssm:Spirs_2077 protein of unknown function DUF164~PFAM: Protein of unknown function DUF164~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920256~PFAM: Putative zinc ribbon domain gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1361 Trebr_1362 Trebr_1362 Trebr_1362 1612425 1614224 - RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR007127:IPR009042:IPR007627:IPR007624:IPR 007630:IPR014284:IPR012760~KEGG: tde:TDE1346 RNA polymerase sigma factor RpoD~PFAM: RNA polymerase sigma-70 region 3%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma factor 70%2C region 1.1%3B RNA polymerase sigma-70 region 4~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma factor RpoD%2C C-terminal%3B RNA polymerase sigma-70~IMG reference gene:2504920257~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 factor%2C region 1.1%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family%3B RNA polymerase sigma factor RpoD%2C C-terminal domain gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1362 Trebr_1363 Trebr_1363 Trebr_1363 1614237 1616021 - DNA primase COGs: COG0358 DNA primase~InterProIPR002694:IPR006154:IPR013264:IPR006171:IPR 019475:IPR006295~KEGG: tde:TDE1345 DNA primase~SPTR: DNA primase%3B~TIGRFAM: DNA primase%2C DnaG~IMG reference gene:2504920258~PFAM: Toprim domain%3B CHC2 zinc finger%3B DNA primase catalytic core%2C N-terminal domain~TIGRFAM: DNA primase%2C catalytic core gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1363 Trebr_1364 Trebr_1364 Trebr_1364 1616021 1617058 - aminodeoxychorismate lyase COGs: COG1559 periplasmic solute-binding protein~InterPro IPR003770~KEGG: tde:TDE1543 hypothetical protein~PFAM: Uncharacterised protein family YceG-like~SPTR: Aminodeoxychorismate lyase%3B~TIGRFAM: Uncharacterised protein family YceG-like~IMG reference gene:2504920259~PFAM: YceG-like family~TIGRFAM: conserved hypothetical protein%2C YceG family gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1364 Trebr_1365 Trebr_1365 Trebr_1365 1617119 1617316 - hypothetical protein IMG reference gene:2504920260 gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1365 Trebr_1366 Trebr_1366 Trebr_1366 1617313 1618254 - metallo-beta-lactamase family protein COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I~KEGG: tde:TDE1541 metallo-beta-lactamase family protein~SPTR: Metallo-beta-lactamase family protein%3B~IMG reference gene:2504920261~PFAM: Metallo-beta-lactamase superfamily gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1366 Trebr_1367 Trebr_1367 Trebr_1367 1618268 1618714 - protein of unknown function UPF0153 InterPro IPR005358~KEGG: tde:TDE1540 hypothetical protein~PFAM: Uncharacterised protein family UPF0153~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920262~PFAM: Uncharacterised protein family (UPF0153) gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1367 Trebr_1368 Trebr_1368 Trebr_1368 1619022 1620608 - Starch synthase COGs: COG0297 Glycogen synthase~InterPro IPR013534:IPR001296~KEGG: glycogen synthase (ADP-glucose)~PFAM: Starch synthase catalytic region%3B Glycosyl transferase%2C group 1~PRIAM: Starch synthase~SPTR: Starch synthase catalytic domain protein%3B~IMG reference gene:2504920265~PFAM: Starch synthase catalytic domain%3B Glycosyl transferases group 1~TIGRFAM: glycogen/starch synthases%2C ADP-glucose type gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1368 Trebr_1369 Trebr_1369 Trebr_1369 1620613 1621047 - chorismate mutase COGs: COG4401 Chorismate mutase~InterPro IPR008243~KEGG: tde:TDE1502 chorismate mutase~PFAM: Chorismate mutase%2C AroH class~SPTR: Chorismate mutase%3B~TIGRFAM: Chorismate mutase%2C AroH class~IMG reference gene:2504920266~PFAM: Chorismate mutase type I~TIGRFAM: monofunctional chorismate mutase%2C gram positive type%2C clade 1 gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1369 Trebr_1370 Trebr_1370 Trebr_1370 1621029 1621394 - hypothetical protein manually curated~IMG reference gene:2504920267 gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1370 Trebr_1371 Trebr_1371 Trebr_1371 1621469 1622305 + hypothetical protein KEGG: tde:TDE2492 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920268 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1371 Trebr_1372 Trebr_1372 Trebr_1372 1622238 1623020 - thiamine pyrophosphokinase COGs: COG1564 Thiamine pyrophosphokinase~InterPro IPR007371:IPR006282~KEGG: tpp:TPASS_0518 hypothetical protein~PFAM: Thiamin pyrophosphokinase%2C catalytic domain~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Thiamin pyrophosphokinase~IMG reference gene:2504920269~PFAM: Thiamin pyrophosphokinase%2C catalytic domain~TIGRFAM: thiamine pyrophosphokinase gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1372 Trebr_1373 Trebr_1373 Trebr_1373 1623064 1624473 + polynucleotide adenylyltransferase/metal dependent phosphohydrolase COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase~InterPro IPR002646:IPR006674~KEGG: tde:TDE1033 polyA polymerase family protein~PFAM: Polynucleotide adenylyltransferase region%3B Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SPTR: tRNA adenylyltransferase%3B~IMG reference gene:2504920270~PFAM: HD domain%3B Poly A polymerase head domain gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1373 Trebr_1374 Trebr_1374 Trebr_1374 1624507 1625577 - tryptophanyl-tRNA synthetase COGs: COG0180 Tryptophanyl-tRNA synthetase~InterPro IPR002305:IPR002306~KEGG: ssm:Spirs_4220 tryptophanyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ib~PRIAM: Tryptophan--tRNA ligase~SPTR: Tryptophanyl-tRNA synthetase%3B~TIGRFAM: Tryptophanyl-tRNA synthetase%2C class Ib~IMG reference gene:2504920271~PFAM: tRNA synthetases class I (W and Y)~TIGRFAM: tryptophanyl-tRNA synthetase gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1374 Trebr_1375 Trebr_1375 Trebr_1375 1625614 1626687 - Methicillin resistance protein COGs: COG2348 Uncharacterized protein involved in methicillin resistance~InterPro IPR003447~KEGG: ssm:Spirs_2888 methicillin resistance protein~PFAM: Methicillin resistance protein~SPTR: FemAB family protein%3B~IMG reference gene:2504920272~PFAM: FemAB family gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1375 Trebr_1376 Trebr_1376 Trebr_1376 1626694 1629039 - Methionyl-tRNA synthetase COGs: COG0143 Methionyl-tRNA synthetase~HAMAP: Methionyl-tRNA synthetase~InterPro IPR015413:IPR002547:IPR002304~KEGG: tde:TDE1063 methionyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class I (M)%3B tRNA-binding region~PRIAM: Methionine--tRNA ligase~SPTR: Methionyl-tRNA synthetase%3B~TIGRFAM: Methionyl-tRNA synthetase%2C class Ia~IMG reference gene:2504920273~PFAM: tRNA synthetases class I (M)%3B Anticodon-binding domain%3B Putative tRNA binding domain~TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain%3B methionyl-tRNA synthetase gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1376 Trebr_1377 Trebr_1377 Trebr_1377 1629207 1631081 - glycoside hydrolase family 57 InterPro IPR004300:IPR015179~KEGG: tde:TDE1395 glycosy hydrolase family protein~PFAM: Glycoside hydrolase%2C family 57%2C core%3B Alpha-amylase/4-alpha-glucanotransferase%2C prokaryotic~SPTR: Glycosyl hydrolase%2C family 57%3B~IMG reference gene:2504920274~PFAM: Glycosyl hydrolase family 57%3B Domain of unknown function (DUF1926) gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1377 Trebr_1378 Trebr_1378 Trebr_1378 1631121 1631705 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein InterPro IPR001450~KEGG: cni:Calni_0585 electron transport complex%2C rnfabcdge type%2C B subunit~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920275 gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1378 Trebr_1379 Trebr_1379 Trebr_1379 1631702 1632250 - hypothetical protein KEGG: tde:TDE1394 hypothetical protein~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504920276 gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1379 Trebr_1380 Trebr_1380 Trebr_1380 1632240 1632878 - hypothetical protein KEGG: tde:TDE1393 hypothetical protein~SPTR: Putative membrane protein%3B~IMG reference gene:2504920277 gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1380 Trebr_1381 Trebr_1381 Trebr_1381 1632884 1633375 - hypothetical protein IMG reference gene:2504920278 gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1381 Trebr_1382 Trebr_1382 Trebr_1382 1633410 1634468 - NQR2/RnfD/RnfE family protein COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD~KEGG: tde:TDE1391 NQR2/RnfD/RnfE family protein~SPTR: NQR2/RnfD/RnfE family protein%3B~IMG reference gene:2504920279~PFAM: NQR2%2C RnfD%2C RnfE family gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1382 Trebr_1383 Trebr_1383 Trebr_1383 1634455 1635741 - Soluble ligand binding domain protein COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC~InterPro IPR011538:IPR019554~KEGG: ssm:Spirs_1909 electron transport complex%2C RnfABCDGE type%2C C subunit~PFAM: Soluble ligand binding domain%3B NADH:ubiquinone oxidoreductase%2C 51kDa subunit~SPTR: Nitrogen fixation protein%3B~IMG reference gene:2504920280~PFAM: Na(+)-translocating NADH-quinone reductase subunit A (NQRA)%3B SLBB domain gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1383 Trebr_1384 Trebr_1384 Trebr_1384 1635738 1637198 - hypothetical protein KEGG: tde:TDE1389 hypothetical protein~SPTR: Putative membrane protein%3B~IMG reference gene:2504920281 gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1384 Trebr_1385 Trebr_1385 Trebr_1385 1637210 1637689 - acid phosphatase/vanadium-dependent haloperoxidase related protein COGs: COG1963 conserved hypothetical protein~InterPro IPR003832~KEGG: tde:TDE1388 hypothetical protein~PFAM: Acid phosphatase/vanadium-dependent haloperoxidase related~SPTR: Integral membrane protein%3B~IMG reference gene:2504920282~PFAM: Divergent PAP2 family gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1385 Trebr_1386 Trebr_1386 Trebr_1386 1637765 1638775 + pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR002942:IPR006145~KEGG: sta:STHERM_c04380 ribosomal large subunit pseudouridine synthase C~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4~SMART: RNA-binding S4~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504920283~PFAM: RNA pseudouridylate synthase%3B S4 domain gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1386 Trebr_1387 Trebr_1387 Trebr_1387 1638772 1639656 + hypothetical protein KEGG: tde:TDE1967 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920284 gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1387 Trebr_1388 Trebr_1388 Trebr_1388 1639663 1640943 - poly(A) polymerase COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase~InterPro IPR002646:IPR010206~KEGG: tde:TDE1726 polyA polymerase family protein~PFAM: Polynucleotide adenylyltransferase region~PRIAM: Polynucleotide adenylyltransferase~SPTR: PolyA polymerase family protein%3B~TIGRFAM: Poly(A) polymerase%2C PcnB~IMG reference gene:2504920285~PFAM: Poly A polymerase head domain~TIGRFAM: poly(A) polymerase gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1388 Trebr_1389 Trebr_1389 Trebr_1389 1641092 1642378 + FAD dependent oxidoreductase COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase~InterPro IPR006076~KEGG: sta:STHERM_c17830 hypothetical protein~PFAM: FAD dependent oxidoreductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920286 gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1389 Trebr_1390 Trebr_1390 Trebr_1390 1642407 1642961 + methyltransferase COGs: COG0742 N6-adenine-specific methylase~InterPro IPR016065:IPR004398~KEGG: tde:TDE1881 methyltransferase%2C putative~PFAM: Protein of unknown function methylase putative~SPTR: Methyltransferase%3B~TIGRFAM: Conserved hypothetical protein CHP00095~IMG reference gene:2504920287~PFAM: Conserved hypothetical protein 95~TIGRFAM: RNA methyltransferase%2C RsmD family gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1390 Trebr_1391 Trebr_1391 Trebr_1391 1643043 1643387 + hypothetical protein KEGG: tde:TDE2072 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920288 gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1391 Trebr_1392 Trebr_1392 Trebr_1392 1643393 1644568 + Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR001440:IPR013105~KEGG: ssm:Spirs_3144 tetratricopeptide TPR_2 repeat protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504920289~PFAM: Tetratricopeptide repeat gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1392 Trebr_1393 Trebr_1393 Trebr_1393 1644575 1645603 + Ribosomal RNA large subunit methyltransferase N COGs: COG0820 Fe-S-cluster redox enzyme~HAMAP: Ribosomal RNA large subunit methyltransferase RlmN%3B~InterPro IPR004383:IPR007197~KEGG: tde:TDE2074 radical SAM protein~PFAM: Radical SAM~SPTR: Ribosomal RNA large subunit methyltransferase N%3B~TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN%3B~IMG reference gene:2504920290~PFAM: Radical SAM superfamily~TIGRFAM: 23S rRNA m2A2503 methyltransferase gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1393 Trebr_1394 Trebr_1394 Trebr_1394 1645653 1645862 + Heavy metal transport/detoxification protein InterPro IPR006121~PFAM: Heavy metal transport/detoxification protein~IMG reference gene:2504920291~PFAM: Heavy-metal-associated domain gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1394 Trebr_1395 Trebr_1395 Trebr_1395 1645862 1646809 + Phosphoglycerate dehydrogenase COGs: COG1052 Lactate dehydrogenase and related dehydrogenase~InterPro IPR006139:IPR006140~KEGG: ppd:Ppro_2951 D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic region~PRIAM: Phosphoglycerate dehydrogenase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920292~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1395 Trebr_1396 Trebr_1396 Trebr_1396 1646842 1647483 - HD superfamily hydrolase COGs: COG1896 hydrolase of HD superfamily~KEGG: npu:Npun_R6315 HD superfamily hydrolase~SPTR: Hydrolase of HD superfamily%3B~IMG reference gene:2504920293 gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1396 Trebr_1397 Trebr_1397 Trebr_1397 1647628 1648161 - aconitate hydratase domain-containing protein COGs: COG0066 3-isopropylmalate dehydratase small subunit~InterPro IPR000573~KEGG: ccb:Clocel_2601 aconitate hydratase domain-containing protein~PFAM: Aconitase A/isopropylmalate dehydratase small subunit%2C swivel~SPTR: Aconitate hydratase domain protein%3B~IMG reference gene:2504920294~PFAM: Aconitase C-terminal domain~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1397 Trebr_1398 Trebr_1398 Trebr_1398 1648158 1649468 - homoaconitate hydratase family protein COGs: COG0065 3-isopropylmalate dehydratase large subunit~InterPro IPR001030:IPR006251~KEGG: ccb:Clocel_2602 homoaconitate hydratase family protein~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha~SPTR: 3-isopropylmalate dehydratase large subunit%3B~TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase%2C large subunit%2C subgroup~IMG reference gene:2504920295~PFAM: Aconitase family (aconitate hydratase)~TIGRFAM: 3-isopropylmalate dehydratase%2C large subunit%3B homoaconitate hydratase family protein gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1398 Trebr_1399 Trebr_1399 Trebr_1399 1649709 1650812 + Peptide methionine sulfoxide reductase msrA COGs: COG0225 Peptide methionine sulfoxide reductase~HAMAP: Peptide methionine sulphoxide reductase MsrA%3B Peptide methionine sulfoxide reductase msrB~InterPro IPR002569:IPR002579~KEGG: bfs:BF3378 bifunctional methionine sulfoxide reductase A/B protein~PFAM: Methionine sulphoxide reductase B%3B Peptide methionine sulphoxide reductase MsrA~PRIAM: Peptide-methionine (S)-S-oxide reductase.%2C Peptide-methionine (R)-S-oxide reductase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Methionine sulphoxide reductase B%3B Peptide methionine sulphoxide reductase MsrA~IMG reference gene:2504920296~PFAM: SelR domain%3B Peptide methionine sulfoxide reductase~TIGRFAM: methionine-S-sulfoxide reductase%3B methionine-R-sulfoxide reductase gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1399 Trebr_1400 Trebr_1400 Trebr_1400 1650855 1651850 - helix-turn-helix domain protein InterPro IPR001387~KEGG: dsy:DSY1729 hypothetical protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Putative helix-turn-helix protein%3B~IMG reference gene:2504920297~PFAM: Helix-turn-helix gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1400 Trebr_1401 Trebr_1401 Trebr_1401 1652093 1654756 - pyruvate%2C phosphate dikinase COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase~InterPro IPR002192:IPR008279:IPR000121:IPR010121~KEGG: ssm:Spirs_1716 pyruvate%2C phosphate dikinase~PFAM: Pyruvate phosphate dikinase%2C PEP/pyruvate-binding%3B PEP-utilising enzyme%2C mobile region%3B PEP-utilising enzyme~PRIAM: Pyruvate%2C phosphate dikinase~SPTR: Pyruvate%2C phosphate dikinase%3B~TIGRFAM: Pyruvate%2C phosphate dikinase~IMG reference gene:2504920298~PFAM: PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C mobile domain%3B Pyruvate phosphate dikinase%2C PEP/pyruvate binding domain~TIGRFAM: pyruvate%2C phosphate dikinase gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1401 Trebr_1402 Trebr_1402 Trebr_1402 1654837 1656177 + Capsule synthesis protein%2C CapA COGs: COG2843 Putative protein of poly-gamma-glutamate biosynthesis (capsule formation)~InterPro IPR019079~KEGG: emi:Emin_0760 hypothetical protein~PFAM: Capsule synthesis protein%2C CapA~SPTR: Putative enzyme of poly-gamma-glutamate biosynthesis%3B~IMG reference gene:2504920299~PFAM: Bacterial capsule synthesis protein PGA_cap gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1402 Trebr_1403 Trebr_1403 Trebr_1403 1656174 1658735 + helicase domain-containing protein COGs: COG1643 HrpA-like helicase~InterPro IPR014001:IPR001650:IPR007502:IPR011709~KEGG: tde:TDE1654 ATP-dependent helicase HrpA%2C putative~PFAM: DNA/RNA helicase%2C C-terminal%3B Helicase-associated region%3B Domain of unknown function DUF1605~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: ATP-dependent helicase HrpA%2C putative%3B~IMG reference gene:2504920300~PFAM: Helicase conserved C-terminal domain%3B Helicase associated domain (HA2)%3B DEAD/DEAH box helicase%3B Domain of unknown function (DUF1605)~TIGRFAM: ATP-dependent helicase HrpA gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1403 Trebr_1404 Trebr_1404 Trebr_1404 1658920 1659648 - TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR003148:IPR006037~KEGG: tde:TDE0294 TrkA domain-containing protein~PFAM: Regulator of K+ conductance%2C N-terminal%3B Regulator of K+ conductance%2C C-terminal~SPTR: TrkA domain protein%3B~IMG reference gene:2504920301~PFAM: TrkA-N domain%3B TrkA-C domain gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1404 Trebr_1405 Trebr_1405 Trebr_1405 1659733 1661070 - H(+)-transporting two-sector ATPase COGs: COG0168 Trk-type K+ transport systems membrane components~InterPro IPR003445~KEGG: bdu:BDU_727 K transport protein~PFAM: Cation transporter~PRIAM: H(+)-transporting two-sector ATPase~SPTR: K transport protein%3B~IMG reference gene:2504920302~PFAM: Cation transport protein~TIGRFAM: potassium uptake protein%2C TrkH family gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1405 Trebr_1406 Trebr_1406 Trebr_1406 1661109 1662362 - oxygen-independent coproporphyrinogen III oxidase COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase~InterPro IPR006638:IPR007197:IPR010723:IPR004559~KEGG: det:DET0858 oxygen-independent coproporphyrinogen III oxidase%2C putative~PFAM: Radical SAM%3B HemN%2C C-terminal~SMART: Elongator protein 3/MiaB/NifB~SPTR: Oxygen-independent coproporphyrinogen III oxidase%2C putative%3B~TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase~IMG reference gene:2504920303~PFAM: Radical SAM superfamily%3B HemN C-terminal region~TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1406 Trebr_1407 Trebr_1407 Trebr_1407 1662367 1663062 - signal peptidase I InterPro IPR019759:IPR000223~KEGG: tde:TDE1465 signal peptidase I%2C putative~PFAM: Peptidase S24/S26A/S26B%2C conserved region~SPTR: Signal peptidase I%2C putative%3B~TIGRFAM: Peptidase S26A%2C signal peptidase I~IMG reference gene:2504920304~PFAM: Peptidase S24-like~TIGRFAM: signal peptidase I%2C bacterial type gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1407 Trebr_1408 Trebr_1408 Trebr_1408 1663119 1663880 - 2-deoxy-D-gluconate 3-dehydrogenase COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)~InterPro IPR002198:IPR011286~KEGG: eel:EUBELI_00528 2-deoxy-D-gluconate 3-dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR~PRIAM: 2-deoxy-D-gluconate 3-dehydrogenase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase~IMG reference gene:2504920305~PFAM: short chain dehydrogenase~TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1408 Trebr_1409 Trebr_1409 Trebr_1409 1664066 1668031 + hypothetical protein InterPro IPR003961~KEGG: ckn:Calkro_0121 glycoside hydrolase family 16~SPTR: Glycoside hydrolase family 16%3B~IMG reference gene:2504920306~PFAM: Fibronectin type III domain gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1409 Trebr_1410 Trebr_1410 Trebr_1410 1668036 1670204 + Fibronectin type III domain protein InterPro IPR003961~KEGG: dal:Dalk_3355 fibronectin type III domain protein~PFAM: Fibronectin%2C type III~SPTR: N-acetylmuramoyl-L-alanine amidase%3B~IMG reference gene:2504920307 gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1410 Trebr_1411 Trebr_1411 Trebr_1411 1670227 1670589 + hypothetical protein IMG reference gene:2504920308 gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1411 Trebr_1412 Trebr_1412 Trebr_1412 1670602 1671456 + hypothetical protein IMG reference gene:2504920309 gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1412 Trebr_1413 Trebr_1413 Trebr_1413 1671535 1672305 - Ribonuclease 3 COGs: COG0571 dsRNA-specific ribonuclease~HAMAP: Ribonuclease III%2C bacterial~InterPro IPR000999:IPR001159:IPR011907~KEGG: tde:TDE1027 ribonuclease III~PFAM: Ribonuclease III%3B Double-stranded RNA binding~PRIAM: Ribonuclease III~SMART: Ribonuclease III%3B Double-stranded RNA binding~SPTR: Ribonuclease 3%3B~TIGRFAM: Ribonuclease III%2C bacterial~IMG reference gene:2504920310~PFAM: Double-stranded RNA binding motif%3B RNase3 domain~TIGRFAM: ribonuclease III%2C bacterial gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1413 Trebr_1414 Trebr_1414 Trebr_1414 1672356 1672592 - Acyl carrier protein COGs: COG0236 Acyl carrier protein~HAMAP: Acyl carrier protein (ACP)~InterPro IPR003231:IPR006163~KEGG: tde:TDE1026 acyl carrier protein~PFAM: Phosphopantetheine-binding~SPTR: Acyl carrier protein%3B~TIGRFAM: Acyl carrier protein (ACP)~IMG reference gene:2504920311~PFAM: Phosphopantetheine attachment site~TIGRFAM: acyl carrier protein gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1414 Trebr_1415 Trebr_1415 Trebr_1415 1672606 1672791 - 50S ribosomal protein L32 COGs: COG0333 Ribosomal protein L32~HAMAP: Ribosomal protein L32p~InterPro IPR002677~KEGG: tde:TDE1025 50S ribosomal protein L32~PFAM: Ribosomal protein L32p~SPTR: 50S ribosomal protein L32%3B~TIGRFAM: Ribosomal protein L32p~IMG reference gene:2504920312~PFAM: Ribosomal L32p protein family~TIGRFAM: ribosomal protein L32 gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1415 Trebr_1416 Trebr_1416 Trebr_1416 1672944 1673423 - Phosphopantetheine adenylyltransferase COGs: COG0669 Phosphopantetheine adenylyltransferase~HAMAP: Coenzyme A biosynthesis protein~InterPro IPR001980:IPR004820:IPR004821~KEGG: tde:TDE1375 pantetheine-phosphate adenylyltransferase~PFAM: Cytidylyltransferase~PRIAM: Pantetheine-phosphate adenylyltransferase~SPTR: Phosphopantetheine adenylyltransferase%3B~TIGRFAM: Coenzyme A biosynthesis protein%3B Cytidyltransferase-related~IMG reference gene:2504920313~PFAM: Cytidylyltransferase~TIGRFAM: pantetheine-phosphate adenylyltransferase%2C bacterial%3B cytidyltransferase-related domain gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1416 Trebr_1417 Trebr_1417 Trebr_1417 1673480 1674061 + putative lipoprotein KEGG: tde:TDE2350 putative lipoprotein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504920314 gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1417 Trebr_1418 Trebr_1418 Trebr_1418 1674124 1674828 + hypothetical protein KEGG: tde:TDE2349 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920315 gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1418 Trebr_1419 Trebr_1419 Trebr_1419 1675036 1675629 + Septum formation protein Maf COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation~HAMAP: Maf-like protein~InterPro IPR003697~KEGG: dal:Dalk_0395 maf protein~PFAM: Maf-like protein~SPTR: Maf-like protein TREVI0001_0108%3B~TIGRFAM: Maf-like protein~IMG reference gene:2504920317~PFAM: Maf-like protein~TIGRFAM: MAF protein gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1419 Trebr_1420 Trebr_1420 Trebr_1420 1675789 1676655 + ribosomal protein S2 COGs: COG0052 Ribosomal protein S2~InterPro IPR001865:IPR005706~KEGG: tde:TDE2347 30S ribosomal protein S2~PFAM: Ribosomal protein S2~SPTR: 30S ribosomal protein S2%3B~TIGRFAM: Ribosomal protein S2%2C bacteria/mitochondria/plastid~IMG reference gene:2504920318~PFAM: Ribosomal protein S2~TIGRFAM: ribosomal protein S2%2C bacterial type gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1420 Trebr_1421 Trebr_1421 Trebr_1421 1676813 1677649 + Elongation factor Ts COGs: COG0264 Translation elongation factor Ts~HAMAP: Elongation factor Ts~InterPro IPR000449:IPR014039:IPR001816~KEGG: tde:TDE2346 elongation factor Ts~PFAM: Translation elongation factor EFTs/EF1B%2C dimerisation%3B Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal~SPTR: Elongation factor Ts%3B~TIGRFAM: Translation elongation factor EFTs/EF1B~IMG reference gene:2504920319~PFAM: Elongation factor TS%3B UBA/TS-N domain~TIGRFAM: translation elongation factor Ts gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1421 Trebr_1422 Trebr_1422 Trebr_1422 1677739 1678290 + Ribosome-recycling factor COGs: COG0233 Ribosome recycling factor~HAMAP: Ribosome recycling factor%2C bacterial-like~InterPro IPR015998:IPR002661~KEGG: tde:TDE2345 ribosome recycling factor~PFAM: Ribosome recycling factor~SPTR: Ribosome-recycling factor%3B~TIGRFAM: Ribosome recycling factor~IMG reference gene:2504920320~PFAM: Ribosome recycling factor~TIGRFAM: ribosome recycling factor gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1422 Trebr_1423 Trebr_1423 Trebr_1423 1678290 1678994 + Undecaprenyl pyrophosphate synthase COGs: COG0020 Undecaprenyl pyrophosphate synthase~HAMAP: Undecaprenyl pyrophosphate synthase~InterPro IPR001441~KEGG: sta:STHERM_c13090 undecaprenyl pyrophosphate synthetase~PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e~PRIAM: Di-trans%2Cpoly-cis-decaprenylcistransferase~SPTR: Undecaprenyl pyrophosphate synthetase%3B~TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like~IMG reference gene:2504920321~PFAM: Putative undecaprenyl diphosphate synthase~TIGRFAM: undecaprenyl diphosphate synthase gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1423 Trebr_1424 Trebr_1424 Trebr_1424 1679007 1679867 + phosphatidate cytidylyltransferase COGs: COG0575 CDP-diglyceride synthetase~InterPro IPR000374~KEGG: tde:TDE2343 phosphatidate cytidylyltransferase~PFAM: Phosphatidate cytidylyltransferase~SPTR: Phosphatidate cytidylyltransferase%3B~IMG reference gene:2504920322~PFAM: Cytidylyltransferase family gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1424 Trebr_1425 Trebr_1425 Trebr_1425 1679871 1681007 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase~HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~InterPro IPR013512:IPR013644:IPR003821~KEGG: tde:TDE2342 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C C-terminal%3B 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C N-terminal~PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase~SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%3B~TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~IMG reference gene:2504920323~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%3B 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal~TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1425 Trebr_1426 Trebr_1426 Trebr_1426 1681004 1682338 + membrane-associated zinc metalloprotease COGs: COG0750 membrane-associated Zn-dependent protease 1~InterPro IPR001478:IPR008915:IPR004387~KEGG: tde:TDE2341 membrane-associated zinc metalloprotease%2C putative~PFAM: Peptidase M50%3B PDZ/DHR/GLGF~SMART: PDZ/DHR/GLGF~SPTR: RIP metalloprotease RseP%3B~TIGRFAM: Peptidase M50%2C putative membrane-associated zinc metallopeptidase~IMG reference gene:2504920324~PFAM: Peptidase family M50%3B PDZ domain (Also known as DHR or GLGF)~TIGRFAM: RIP metalloprotease RseP gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1426 Trebr_1427 Trebr_1427 Trebr_1427 1682347 1684272 + hypothetical protein KEGG: tde:TDE2184 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920325 gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1427 Trebr_1428 Trebr_1428 Trebr_1428 1684427 1685755 - replicative DNA helicase COGs: COG0305 Replicative DNA helicase~InterPro IPR003593:IPR007693:IPR007694:IPR007692~KEGG: ssm:Spirs_2874 replicative DNA helicase~PFAM: DNA helicase%2C DnaB-like%2C C-terminal%3B DNA helicase%2C DnaB-like%2C N-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: Replicative DNA helicase%3B~TIGRFAM: DNA helicase%2C DnaB type~IMG reference gene:2504920326~PFAM: DnaB-like helicase N terminal domain%3B DnaB-like helicase C terminal domain~TIGRFAM: replicative DNA helicase gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1428 Trebr_1429 Trebr_1429 Trebr_1429 1685759 1686304 - 50S ribosomal protein L9 COGs: COG0359 Ribosomal protein L9~HAMAP: Ribosomal protein L9%2C bacteria/chloroplast~InterPro IPR020594:IPR020070:IPR020069~KEGG: tde:TDE1675 50S ribosomal protein L9~PFAM: Ribosomal protein L9%2C N-terminal%3B Ribosomal protein L9%2C C-terminal~SPTR: 50S ribosomal protein L9%3B~TIGRFAM: Ribosomal protein L9%2C bacteria/chloroplast~IMG reference gene:2504920327~PFAM: Ribosomal protein L9%2C N-terminal domain%3B Ribosomal protein L9%2C C-terminal domain~TIGRFAM: ribosomal protein L9 gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1429 Trebr_1430 Trebr_1430 Trebr_1430 1686398 1686709 - 30S ribosomal protein S18 COGs: COG0238 Ribosomal protein S18~HAMAP: 30S ribosomal protein S18~InterPro IPR001648~KEGG: tde:TDE1676 30S ribosomal protein S18~PFAM: Ribosomal protein S18~SPTR: 30S ribosomal protein S18%3B~TIGRFAM: Ribosomal protein S18~IMG reference gene:2504920328~PFAM: Ribosomal protein S18~TIGRFAM: ribosomal protein S18 gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1430 Trebr_1431 Trebr_1431 Trebr_1431 1686749 1687258 - single-strand binding protein COGs: COG0629 Single-stranded DNA-binding protein~InterPro IPR000424:IPR011344~KEGG: tde:TDE1677 single-strand binding protein~PFAM: Primosome PriB/single-strand DNA-binding~SPTR: Single-stranded DNA-binding protein%3B~TIGRFAM: Single-strand DNA-binding~IMG reference gene:2504920329~PFAM: Single-strand binding protein family~TIGRFAM: single stranded DNA-binding protein (ssb) gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1431 Trebr_1432 Trebr_1432 Trebr_1432 1687280 1687561 - 30S ribosomal protein S6 COGs: COG0360 Ribosomal protein S6~HAMAP: Ribosomal protein S6%2C bacterial-like~InterPro IPR020814:IPR000529~KEGG: tde:TDE1678 30S ribosomal protein S6~PFAM: Ribosomal protein S6%2C bacterial-like~SPTR: 30S ribosomal protein S6%3B~TIGRFAM: Ribosomal protein S6~IMG reference gene:2504920330~PFAM: Ribosomal protein S6~TIGRFAM: ribosomal protein S6 gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1432 Trebr_1433 Trebr_1433 Trebr_1433 1687762 1690425 + leucyl-tRNA synthetase COGs: COG0495 Leucyl-tRNA synthetase~InterPro IPR015413:IPR013155:IPR002302~KEGG: tde:TDE2339 leucyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class I (M)%3B Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding~PRIAM: Leucine--tRNA ligase~SPTR: Leucyl-tRNA synthetase%3B~TIGRFAM: Leucyl-tRNA synthetase%2C class Ia%2C bacterial/mitochondrial~IMG reference gene:2504920331~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain~TIGRFAM: leucyl-tRNA synthetase%2C eubacterial and mitochondrial family gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1433 Trebr_1434 Trebr_1434 Trebr_1434 1690454 1691416 + cation diffusion facilitator family transporter COGs: COG0053 Co/Zn/Cd cation transporter~InterPro IPR002524~KEGG: tde:TDE0634 cation efflux family protein~PFAM: Cation efflux protein~SPTR: Cation efflux family protein%3B~TIGRFAM: Cation efflux protein~IMG reference gene:2504920332~PFAM: Cation efflux family~TIGRFAM: cation diffusion facilitator family transporter gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1434 Trebr_1435 Trebr_1435 Trebr_1435 1691498 1692355 - peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin COGs: COG1876 D-alanyl-D-alanine carboxypeptidase~InterPro IPR003709~KEGG: tde:TDE0633 D-alanyl-D-alanine carboxypeptidase%2C putative~PFAM: Peptidase M15B/M15C%2C D%2CD-carboxypeptidase VanY/endolysins~SPTR: Peptidase M15B and M15C%2C D%2CD-carboxypeptidase VanY/endolysins%3B~IMG reference gene:2504920333~PFAM: D-alanyl-D-alanine carboxypeptidase gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1435 Trebr_1436 Trebr_1436 Trebr_1436 1692360 1692686 - Sulfate transporter/antisigma-factor antagonist STAS InterPro IPR002645~KEGG: tde:TDE0632 anti-anti-sigma factor~PFAM: Sulphate transporter/antisigma-factor antagonist STAS~SPTR: Anti-sigma factor antagonist%3B~IMG reference gene:2504920334~PFAM: STAS domain~TIGRFAM: anti-anti-sigma factor gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1436 Trebr_1437 Trebr_1437 Trebr_1437 1692905 1695046 - protein serine/threonine phosphatase COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR001932:IPR010822~KEGG: tde:TDE0631 sigma factor regulatory protein%2C putative~PFAM: Sporulation stage II%2C protein E C-terminal~SMART: Protein phosphatase 2C-related~SPTR: Sigma factor regulatory protein%2C putative%3B~IMG reference gene:2504920335~PFAM: Stage II sporulation protein E (SpoIIE) gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1437 Trebr_1438 Trebr_1438 Trebr_1438 1695053 1696435 - protein serine/threonine phosphatase COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR001932:IPR010822~KEGG: tde:TDE0630 sigma factor regulatory protein%2C putative~PFAM: Sporulation stage II%2C protein E C-terminal~SMART: Protein phosphatase 2C-related~SPTR: Sigma factor regulatory protein%2C putative%3B~IMG reference gene:2504920336~PFAM: Stage II sporulation protein E (SpoIIE) gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1438 Trebr_1439 Trebr_1439 Trebr_1439 1696591 1698171 + hypothetical protein IMG reference gene:2504920337~PFAM: Erythromycin esterase gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1439 Trebr_1440 Trebr_1440 Trebr_1440 1698396 1699406 - hypothetical protein KEGG: hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920338 gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1440 Trebr_1441 Trebr_1441 Trebr_1441 1699421 1700122 - hypothetical protein COGs: COG0822 NifU homolog involved in Fe-S cluster formation~KEGG: ere:EUBREC_2146 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920339 gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1441 Trebr_1442 Trebr_1442 Trebr_1442 1700337 1701491 - glycosyltransferase 28 domain-containing protein COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase~KEGG: mrb:Mrub_2159 glycosyltransferase 28 domain-containing protein~SPTR: Glycosyltransferase family 28 domain protein%3B~IMG reference gene:2504920340~PFAM: Glycosyltransferase family 28 C-terminal domain%3B Monogalactosyldiacylglycerol (MGDG) synthase gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1442 Trebr_1443 Trebr_1443 Trebr_1443 1701618 1702835 - N-acylglucosamine 2-epimerase COGs: COG2942 N-acyl-D-glucosamine 2-epimerase~InterPro IPR010819~KEGG: clo:HMPREF0868_0510 N-acylglucosamine 2-epimerase~PFAM: N-acylglucosamine 2-epimerase~PRIAM: N-acylglucosamine 2-epimerase~SPTR: N-acylglucosamine 2-epimerase%3B~IMG reference gene:2504920341~PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1443 Trebr_1444 Trebr_1444 Trebr_1444 1702857 1703780 - N-acetylneuraminate lyase COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase~InterPro IPR002220~KEGG: bhy:BHWA1_01223 N-acetylneuraminate lyase~PFAM: Dihydrodipicolinate synthetase~PRIAM: N-acetylneuraminate lyase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920342~PFAM: Dihydrodipicolinate synthetase family~TIGRFAM: N-acetylneuraminate lyase gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1444 Trebr_1445 Trebr_1445 Trebr_1445 1703786 1704634 - ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: sak:SAK_0069 carbohydrate ABC transporter permease~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Inner membrane binding protein%3B~IMG reference gene:2504920343~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1445 Trebr_1446 Trebr_1446 Trebr_1446 1704690 1705619 - ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: pjd:Pjdr2_6205 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: ABC transporter%2C permease protein%3B~IMG reference gene:2504920344~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1446 Trebr_1447 Trebr_1447 Trebr_1447 1705732 1707045 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: tde:TDE1283 extracellular solute-binding lipoprotein%2C putative~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Bacterial extracellular solute-binding protein%3B~IMG reference gene:2504920345~PFAM: Bacterial extracellular solute-binding protein gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1447 Trebr_1448 Trebr_1448 Trebr_1448 1707286 1707942 + transcriptional regulator%2C GntR family COGs: COG1802 Transcriptional regulators~InterPro IPR000524:IPR011711~KEGG: dae:Dtox_0202 transcriptional regulator%2C GntR family~PFAM: HTH transcriptional regulator%2C GntR%3B GntR%2C C-terminal~SMART: HTH transcriptional regulator%2C GntR~SPTR: Transcriptional regulator%2C GntR family%3B~IMG reference gene:2504920346~PFAM: Bacterial regulatory proteins%2C gntR family%3B FCD domain gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1448 Trebr_1449 Trebr_1449 Trebr_1449 1708199 1710244 - translation elongation factor G COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 004540:IPR005225~KEGG: tde:TDE0285 elongation factor G~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal~SPTR: Elongation factor G 2%3B~TIGRFAM: Translation elongation factor EFG/EF2%3B Small GTP-binding protein~IMG reference gene:2504920348~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G%3B small GTP-binding protein domain gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1449 Trebr_1450 Trebr_1450 Trebr_1450 1710349 1710807 - transcription activator effector binding protein COGs: COG3708 conserved hypothetical protein~InterPro IPR010499~KEGG: cbt:CLH_3132 transcriptional regulator%2C AraC family~PFAM: Bacterial transcription activator%2C effector binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920349~PFAM: Bacterial transcription activator%2C effector binding domain gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1450 Trebr_1451 Trebr_1451 Trebr_1451 1710994 1712715 - Xenobiotic-transporting ATPase COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR003593:IPR003439~KEGG: efa:EF0584 ABC transporter%2C ATP-binding/permease protein~PFAM: ABC transporter-like~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C permease/ATP-binding protein%3B~IMG reference gene:2504920350~PFAM: ABC transporter%3B ABC transporter transmembrane region gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1451 Trebr_1452 Trebr_1452 Trebr_1452 1712712 1714457 - Xenobiotic-transporting ATPase COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR003593:IPR001140:IPR003439~KEGG: fma:FMG_1403 multidrug ABC transporter~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C permease/ATP-binding protein%3B~IMG reference gene:2504920351~PFAM: ABC transporter%3B ABC transporter transmembrane region gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1452 Trebr_1453 Trebr_1453 Trebr_1453 1714669 1715658 + transcriptional regulator%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060:IPR000005~KEGG: fma:FMG_1404 transcriptional regulator~PFAM: Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%3B~IMG reference gene:2504920352~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1453 Trebr_1454 Trebr_1454 Trebr_1454 1715745 1715963 + 30S ribosomal protein S21 HAMAP: Ribosomal protein S21~InterPro IPR001911~KEGG: tpp:TPASS_0758 30S ribosomal protein S21~PFAM: Ribosomal protein S21~SPTR: 30S ribosomal protein S21%3B~TIGRFAM: Ribosomal protein S21~IMG reference gene:2504920353~PFAM: Ribosomal protein S21~TIGRFAM: ribosomal protein S21 gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1454 Trebr_1455 Trebr_1455 Trebr_1455 1715964 1716881 + hypothetical protein KEGG: tde:TDE0635 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920354 gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1455 Trebr_1456 Trebr_1456 Trebr_1456 1716914 1717714 + type IV pilus assembly PilZ InterPro IPR009875~KEGG: sta:STHERM_c07760 hypothetical protein~PFAM: Type IV pilus assembly PilZ~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920355~PFAM: PilZ domain gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1456 Trebr_1457 Trebr_1457 Trebr_1457 1717991 1719130 + Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR001440:IPR013105~KEGG: tde:TDE0213 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504920356~PFAM: Coatomer epsilon subunit gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1457 Trebr_1458 Trebr_1458 Trebr_1458 1719172 1719615 - protein of unknown function DUF192 COGs: COG1430 conserved hypothetical protein~InterPro IPR003795~KEGG: coc:Coch_1289 protein of unknown function DUF192~PFAM: Protein of unknown function DUF192~SPTR: Lipoprotein%3B~IMG reference gene:2504920357~PFAM: Uncharacterized ACR%2C COG1430 gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1458 Trebr_1459 Trebr_1459 Trebr_1459 1719630 1720175 - hypothetical protein KEGG: tde:TDE0066 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920358 gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1459 Trebr_1460 Trebr_1460 Trebr_1460 1720184 1721365 - putative transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterPro IPR000595~KEGG: tde:TDE0067 cyclic nucleotide-binding protein~PFAM: Cyclic nucleotide-binding~SMART: Cyclic nucleotide-binding~SPTR: Cyclic nucleotide-binding protein%3B~IMG reference gene:2504920359~PFAM: Cyclic nucleotide-binding domain gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1460 Trebr_1461 Trebr_1461 Trebr_1461 1721461 1722558 - UDP-N-acetylenolpyruvoylglucosamine reductase COGs: COG0812 UDP-N-acetylmuramate dehydrogenase~HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase~InterPro IPR003170:IPR006094:IPR011601~KEGG: tde:TDE0093 UDP-N-acetylenolpyruvoylglucosamine reductase%2C putative~PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase%2C C-terminal%3B FAD linked oxidase%2C N-terminal~PRIAM: UDP-N-acetylmuramate dehydrogenase~SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase%3B~TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase~IMG reference gene:2504920360~PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase%2C C-terminal domain~TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1461 Trebr_1462 Trebr_1462 Trebr_1462 1722615 1724108 + cysteinyl-tRNA synthetase COGs: COG0215 Cysteinyl-tRNA synthetase~InterPro IPR015803:IPR002308~KEGG: tde:TDE0092 cysteinyl-tRNA synthetase~PFAM: Cysteinyl-tRNA synthetase%2C class Ia%2C N-terminal~PRIAM: Cysteine--tRNA ligase~SPTR: Cysteinyl-tRNA synthetase%3B~TIGRFAM: Cysteinyl-tRNA synthetase%2C class Ia~IMG reference gene:2504920361~PFAM: tRNA synthetases class I (C) catalytic domain~TIGRFAM: cysteinyl-tRNA synthetase gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1462 Trebr_1463 Trebr_1463 Trebr_1463 1724143 1724700 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog~InterPro IPR007627:IPR013249:IPR014284~KEGG: tde:TDE0091 RNA polymerase sigma-24 factor%2C putative~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2%3B RNA polymerase sigma-70 region 2~SPTR: RNA polymerase sigma-24 factor%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504920362~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1463 Trebr_1464 Trebr_1464 Trebr_1464 1724684 1725403 + hypothetical protein KEGG: tde:TDE0090 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920363 gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1464 Trebr_1465 Trebr_1465 Trebr_1465 1725403 1727094 + transglutaminase domain-containing protein COGs: COG1305 Transglutaminase-like protein~InterPro IPR002931:IPR002909~KEGG: tde:TDE0089 transglutaminase-like domain-containing protein~PFAM: Transglutaminase-like%3B Cell surface receptor IPT/TIG~SMART: Transglutaminase-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920364~PFAM: Transglutaminase-like superfamily%3B IPT/TIG domain gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1465 Trebr_1466 Trebr_1466 Trebr_1466 1727124 1727819 + uridylate kinase COGs: COG0528 Uridylate kinase~InterPro IPR001048:IPR011818~KEGG: tde:TDE2085 uridylate kinase~PFAM: Aspartate/glutamate/uridylate kinase~SPTR: Amino acid kinase family protein%3B~TIGRFAM: Uridylate kinase%2C archaeal/spirochete%2C putative~IMG reference gene:2504920365~PFAM: Amino acid kinase family~TIGRFAM: uridylate kinase%2C putative gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1466 Trebr_1467 Trebr_1467 Trebr_1467 1727918 1728520 - hypothetical protein KEGG: tde:TDE0488 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504920366~PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1467 Trebr_1468 Trebr_1468 Trebr_1468 1728620 1729285 + DNA repair protein RadC COGs: COG2003 DNA repair protein~InterPro IPR001405~KEGG: nde:NIDE2507 DNA repair protein RadC-like protein~PFAM: DNA repair%2C RadC-like~SPTR: DNA repair protein RadC homolog%3B~TIGRFAM: DNA repair%2C RadC-like~IMG reference gene:2504920367~PFAM: Protein of unknown function (DUF2466)~TIGRFAM: DNA repair protein radc gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1468 Trebr_1469 Trebr_1469 Trebr_1469 1729320 1730504 - hypothetical protein KEGG: tde:TDE2244 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920368 gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1469 Trebr_1470 Trebr_1470 Trebr_1470 1730647 1731681 + aldo/keto reductase COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase)~InterPro IPR001395~KEGG: cbe:Cbei_3974 aldo/keto reductase~PFAM: Aldo/keto reductase~SPTR: Aldo/keto reductase%3B~IMG reference gene:2504920369~PFAM: Aldo/keto reductase family gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1470 Trebr_1471 Trebr_1471 Trebr_1471 1731681 1732589 + protein of unknown function DUF519 COGs: COG2961 Protein involved in catabolism of external DNA~InterPro IPR007473~KEGG: ecl:EcolC_0217 hypothetical protein~PFAM: Protein of unknown function DUF519~SPTR: Putative DNA (Exogenous) processing protein%3B~IMG reference gene:2504920370~PFAM: Protein of unknown function (DUF519) gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1471 Trebr_1472 Trebr_1472 Trebr_1472 1732598 1735195 - ATP-dependent chaperone ClpB COGs: COG0542 ATPase with chaperone activity ATP-binding subunit~InterProIPR003593:IPR004176:IPR003959:IPR013093:IPR 019489:IPR017730~KEGG: bpo:BP951000_2092 ATP-dependent Clp protease ATP-binding subunit ClpB~PFAM: ATPase associated with various cellular activities%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent Clp protease%2C ATP-binding subunit ClpB%3B~TIGRFAM: Chaperonin ClpB~IMG reference gene:2504920371~PFAM: AAA domain (Cdc48 subfamily)%3B Clp amino terminal domain%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent chaperone ClpB gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1472 Trebr_1473 Trebr_1473 Trebr_1473 1735295 1736344 - hypothetical protein KEGG: ccb:Clocel_0502 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920372 gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1473 Trebr_1474 Trebr_1474 Trebr_1474 1736417 1736629 - hypothetical protein IMG reference gene:2504920373 gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1474 Trebr_1475 Trebr_1475 Trebr_1475 1736667 1739804 - Peptidase M16C associated domain protein COGs: COG1026 Zn-dependent peptidase insulinase-like~InterPro IPR011765:IPR007863:IPR013578~KEGG: tde:TDE1865 M16 family peptidase~PFAM: Peptidase M16C associated%3B Peptidase M16%2C C-terminal%3B Peptidase M16%2C N-terminal~SPTR: Peptidase%2C M16 family%3B~IMG reference gene:2504920374~PFAM: Peptidase M16C associated%3B Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1475 Trebr_1476 Trebr_1476 Trebr_1476 1740175 1741857 + 2-isopropylmalate synthase COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase~InterPro IPR000891:IPR013709:IPR005668~KEGG: caa:Caka_1596 2-isopropylmalate synthase~PFAM: Pyruvate carboxyltransferase%3B 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain~PRIAM: 2-isopropylmalate synthase~SPTR: 2-isopropylmalate synthase%3B~TIGRFAM: Yeast 2-isopropylmalate synthase~IMG reference gene:2504920375~PFAM: LeuA allosteric (dimerisation) domain%3B HMGL-like~TIGRFAM: 2-isopropylmalate synthase%2C yeast type gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1476 Trebr_1477 Trebr_1477 Trebr_1477 1742541 1743095 + hypothetical protein IMG reference gene:2504920379 gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1477 Trebr_1478 Trebr_1478 Trebr_1478 1743103 1743825 + regulatory protein LuxR InterPro IPR000792~PFAM: Transcription regulator LuxR%2C C-terminal~SMART: Transcription regulator LuxR%2C C-terminal~SPTR: Sigma-70%2C region 4 family%3B~manually curated~IMG reference gene:2504920380~PFAM: Bacterial regulatory proteins%2C luxR family gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1478 Trebr_1479 Trebr_1479 Trebr_1479 1744296 1744913 + Holliday junction ATP-dependent DNA helicase ruvA COGs: COG0632 Holliday junction resolvasome DNA-binding subunit~HAMAP: Holliday junction ATP-dependent DNA helicase ruvA~InterPro IPR003583:IPR013849:IPR000085~KEGG: tde:TDE1863 Holliday junction DNA helicase RuvA~PFAM: DNA helicase%2C Holliday junction RuvA type%2C domain I%2C bacterial~SPTR: Holliday junction ATP-dependent DNA helicase ruvA%3B~TIGRFAM: Bacterial DNA recombination protein RuvA~IMG reference gene:2504920381~PFAM: RuvA N terminal domain~TIGRFAM: Holliday junction DNA helicase%2C RuvA subunit gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1479 Trebr_1480 Trebr_1480 Trebr_1480 1744915 1745934 + Holliday junction ATP-dependent DNA helicase ruvB COGs: COG2255 Holliday junction resolvasome helicase subunit~HAMAP: DNA helicase%2C Holliday junction RuvB type~InterProIPR003593:IPR004605:IPR008824:IPR003959:IPR 008823~KEGG: tde:TDE1914 Holliday junction DNA helicase RuvB~PFAM: DNA helicase%2C Holliday junction RuvB type%2C C-terminal%3B ATPase%2C AAA-type%2C core%3B DNA helicase%2C Holliday junction RuvB type%2C N-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: Holliday junction ATP-dependent DNA helicase ruvB%3B~TIGRFAM: DNA helicase%2C Holliday junction RuvB type~IMG reference gene:2504920382~PFAM: Holliday junction DNA helicase ruvB C-terminus%3B Holliday junction DNA helicase ruvB N-terminus~TIGRFAM: Holliday junction DNA helicase%2C RuvB subunit gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1480 Trebr_1481 Trebr_1481 Trebr_1481 1745909 1746946 + S-adenosylmethionine:tRNAribosyltransferase-isomerase COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)~HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase~InterPro IPR003699~KEGG: tde:TDE2451 S-adenosylmethionine:tRNA ribosyltransferase-isomerase~PFAM: Queuosine biosynthesis protein~SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase%3B~TIGRFAM: Queuosine biosynthesis protein~IMG reference gene:2504920383~PFAM: Queuosine biosynthesis protein~TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1481 Trebr_1482 Trebr_1482 Trebr_1482 1747047 1747589 + Rubrerythrin COGs: COG1592 Rubrerythrin~InterPro IPR004039:IPR003251~KEGG: fsu:Fisuc_1486 rubrerythrin~PFAM: Rubrerythrin%3B Rubredoxin-type Fe(Cys)4 protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920384~PFAM: Rubrerythrin gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1482 Trebr_1483 Trebr_1483 Trebr_1483 1747731 1748171 + ferric uptake regulator%2C Fur family COGs: COG0735 Fe2+/Zn2+ uptake regulation protein~InterPro IPR002481~KEGG: csc:Csac_2429 ferric uptake regulator family protein~PFAM: Ferric-uptake regulator~SPTR: Fe2+/Zn2+ uptake regulation protein%3B~IMG reference gene:2504920385~PFAM: Ferric uptake regulator family gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1483 Trebr_1484 Trebr_1484 Trebr_1484 1748305 1751127 + Ankyrin COGs: COG0666 FOG: Ankyrin repeat~InterPro IPR002110~KEGG: tde:TDE2693 ankyrin repeateat-containing protein~PFAM: Ankyrin repeat~SMART: Ankyrin repeat~SPTR: Ankyrin repeat protein%3B~IMG reference gene:2504920386~PFAM: Ankyrin repeat gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1484 Trebr_1485 Trebr_1485 Trebr_1485 1751191 1751484 - trp operon repressor InterPro IPR000831:IPR013335~KEGG: ssm:Spirs_1491 Trp repressor~PFAM: Trp repressor~SPTR: Trp repressor%3B~TIGRFAM: Trp repressor%2C bacterial~IMG reference gene:2504920387~PFAM: Trp repressor protein~TIGRFAM: trp operon repressor%2C proteobacterial gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1485 Trebr_1486 Trebr_1486 Trebr_1486 1751533 1751778 + hypothetical protein KEGG: ppd:Ppro_2932 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920388 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1486 Trebr_1487 Trebr_1487 Trebr_1487 1751904 1752947 - TatD-related deoxyribonuclease COGs: COG0084 Mg-dependent DNase~InterPro IPR001130~KEGG: tde:TDE2029 TatD family hydrolase~PFAM: Deoxyribonuclease%2C TatD-related~SPTR: Hydrolase%2C TatD family%3B~IMG reference gene:2504920389~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1487 Trebr_1488 Trebr_1488 Trebr_1488 1753380 1755170 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: mgm:Mmc1_1479 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504920392~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1488 Trebr_1489 Trebr_1489 Trebr_1489 1755175 1756947 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089~KEGG: alv:Alvin_0595 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer%3B~IMG reference gene:2504920393~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1489 Trebr_1490 Trebr_1490 Trebr_1490 1756974 1758815 - adenylate/guanylate cyclase COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR001789:IPR001054~KEGG: sta:STHERM_c01070 adenylate cyclase~PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase%3B Signal transduction response regulator%2C receiver region~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase%3B Signal transduction response regulator%2C receiver region~SPTR: Adenylate cyclase%3B~IMG reference gene:2504920394~PFAM: Adenylate and Guanylate cyclase catalytic domain%3B Response regulator receiver domain gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1490 Trebr_1491 Trebr_1491 Trebr_1491 1758808 1760898 - CheA signal transduction histidine kinase COGs: COG0643 Chemotaxis protein histidine kinase and related kinase~InterPro IPR008207:IPR003594:IPR002545:IPR001789~KEGG: mgm:Mmc1_1482 CheA signal transduction histidine kinases~PFAM: Signal transduction response regulator%2C receiver region%3B ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region%3B CheW-like protein~SMART: Signal transduction response regulator%2C receiver region%3B ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region%3B CheW-like protein~SPTR: CheA signal transduction histidine kinases%3B~IMG reference gene:2504920395~PFAM: CheW-like domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Response regulator receiver domain%3B Hpt domain gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1491 Trebr_1492 Trebr_1492 Trebr_1492 1760914 1762206 - MCP methyltransferase%2C CheR-type COGs: COG1352 Methylase of chemotaxis methyl-accepting protein~InterPro IPR000780~KEGG: dal:Dalk_1591 MCP methyltransferase%2C CheR-type~PFAM: MCP methyltransferase%2C CheR-type~PRIAM: Protein-glutamate O-methyltransferase~SMART: MCP methyltransferase%2C CheR-type~SPTR: MCP methyltransferase%2C CheR-type%3B~IMG reference gene:2504920396~PFAM: CheR methyltransferase%2C SAM binding domain gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1492 Trebr_1493 Trebr_1493 Trebr_1493 1762199 1763311 - CheB methylesterase COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain~InterPro IPR000673~KEGG: pol:Bpro_2467 response regulator receiver (CheY-like) modulated CheB methylesterase~PFAM: Signal transduction response regulator%2C chemotaxis%2C protein-glutamate methylesterase~PRIAM: Protein-glutamate methylesterase~SPTR: Response regulator receiver (CheY-like) modulated CheB methylesterase%3B~IMG reference gene:2504920397~PFAM: CheB methylesterase gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1493 Trebr_1494 Trebr_1494 Trebr_1494 1763314 1763700 - hypothetical protein IMG reference gene:2504920398 gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1494 Trebr_1495 Trebr_1495 Trebr_1495 1763756 1764247 - CheW protein COGs: COG0835 Chemotaxis signal transduction protein~InterPro IPR002545~KEGG: cce:Ccel_2099 CheW protein~PFAM: CheW-like protein~SMART: CheW-like protein~SPTR: CheW protein%3B~IMG reference gene:2504920399~PFAM: CheW-like domain gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1495 Trebr_1496 Trebr_1496 Trebr_1496 1764546 1765673 - Chaperone protein dnaJ COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~HAMAP: Chaperone protein dnaJ~InterPro IPR001623:IPR001305:IPR002939:IPR012724~KEGG: ssm:Spirs_3197 chaperone protein DnaJ~PFAM: Chaperone DnaJ%2C C-terminal%3B Heat shock protein DnaJ%2C N-terminal%3B Heat shock protein DnaJ%2C cysteine-rich region~SMART: Heat shock protein DnaJ%2C N-terminal~SPTR: Chaperone protein DnaJ%3B~TIGRFAM: Chaperone DnaJ~IMG reference gene:2504920400~PFAM: DnaJ central domain (4 repeats)%3B DnaJ domain%3B DnaJ C terminal region~TIGRFAM: chaperone protein DnaJ gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1496 Trebr_1497 Trebr_1497 Trebr_1497 1765819 1767756 - Chaperone protein dnaK COGs: COG0443 Molecular chaperone~HAMAP: Chaperone DnaK~InterPro IPR012725:IPR013126~KEGG: tde:TDE0628 molecular chaperone DnaK~PFAM: Heat shock protein 70~SPTR: Chaperone protein dnaK%3B~TIGRFAM: Chaperone DnaK~IMG reference gene:2504920401~PFAM: Hsp70 protein~TIGRFAM: chaperone protein DnaK gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1497 Trebr_1498 Trebr_1498 Trebr_1498 1767806 1768471 - Protein grpE COGs: COG0576 Molecular chaperone GrpE (heat shock protein)~HAMAP: GrpE nucleotide exchange factor~InterPro IPR000740~KEGG: tde:TDE0627 co-chaperone protein GrpE~PFAM: GrpE nucleotide exchange factor~SPTR: Protein grpE%3B~IMG reference gene:2504920402~PFAM: GrpE gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1498 Trebr_1499 Trebr_1499 Trebr_1499 1768557 1769600 - pseudogene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1499 Trebr_1500 Trebr_1500 Trebr_1500 1769608 1770645 - Aspartate--ammonia ligase COGs: COG2502 Asparagine synthetase A~HAMAP: Aspartate--ammonia ligase~InterPro IPR004618~KEGG: pru:PRU_1711 aspartate--ammonia ligase~PFAM: Aspartate--ammonia ligase~PRIAM: Aspartate--ammonia ligase~SPTR: Aspartate--ammonia ligase%3B~TIGRFAM: Aspartate--ammonia ligase~IMG reference gene:2504920404~PFAM: Aspartate-ammonia ligase~TIGRFAM: aspartate--ammonia ligase%2C AsnA-type gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1500 Trebr_1501 Trebr_1501 Trebr_1501 1770853 1772985 + UvrD/REP helicase COGs: COG0210 Superfamily I DNA and RNA helicase~InterPro IPR000212~KEGG: tde:TDE0903 ATP-dependent DNA helicase PcrA~PFAM: DNA helicase%2C UvrD/REP type~SPTR: ATP-dependent DNA helicase PcrA%3B~IMG reference gene:2504920405~PFAM: UvrD/REP helicase gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1501 Trebr_1502 Trebr_1502 Trebr_1502 1773161 1773298 + hypothetical protein IMG reference gene:2504920406 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1502 Trebr_1503 Trebr_1503 Trebr_1503 1773395 1774180 + hypothetical protein KEGG: dal:Dalk_4949 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920407 gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1503 Trebr_1504 Trebr_1504 Trebr_1504 1774196 1775488 + deoxyribonuclease/rho motif-related TRAM COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase~InterPro IPR002792:IPR010280~KEGG: tde:TDE2619 RNA methyltransferase~PFAM: Deoxyribonuclease/rho motif-related TRAM%3B (Uracil-5)-methyltransferase~SPTR: Uncharacterized RNA methyltransferase TDE_2619%3B~IMG reference gene:2504920408~PFAM: TRAM domain%3B tRNA (Uracil-5-)-methyltransferase gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1504 Trebr_1505 Trebr_1505 Trebr_1505 1775485 1777263 + hypothetical protein KEGG: tde:TDE2698 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920409 gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1505 Trebr_1506 Trebr_1506 Trebr_1506 1777342 1778934 + P83100 family protein InterPro IPR007926~KEGG: tde:TDE2699 antigen%2C putative~PFAM: Borrelia P83100~SPTR: Antigen%2C putative%3B~IMG reference gene:2504920410~PFAM: Borrelia P83/100 protein gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1506 Trebr_1507 Trebr_1507 Trebr_1507 1778992 1779462 - Glyoxalase/bleomycin resistance protein/dioxygenase InterPro IPR004360~KEGG: dsy:DSY0048 hypothetical protein~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920411~PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1507 Trebr_1508 Trebr_1508 Trebr_1508 1779475 1780254 - Helix-turn-helix%2C AraC domain protein COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060~KEGG: dsy:DSY0047 hypothetical protein~SMART: Helix-turn-helix%2C AraC domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920412~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1508 Trebr_1509 Trebr_1509 Trebr_1509 1780306 1782600 - Conserved hypothetical protein CHP03545 InterPro IPR019934~KEGG: tde:TDE1580 hypothetical protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP03545~IMG reference gene:2504920413~TIGRFAM: TIGR03545 family protein gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1509 Trebr_1510 Trebr_1510 Trebr_1510 1782622 1783149 - Conserved hypothetical protein CHP03546 InterPro IPR019935~KEGG: tde:TDE1581 hypothetical protein~SPTR: Membrane protein%2C putative%3B~TIGRFAM: Conserved hypothetical protein CHP03546~IMG reference gene:2504920414~PFAM: Uncharacterized protein conserved in bacteria (DUF2062)~TIGRFAM: TIGR03546 family protein gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1510 Trebr_1511 Trebr_1511 Trebr_1511 1783201 1784667 - Glycogen synthase COGs: COG0297 Glycogen synthase~HAMAP: Glycogen/starch synthases%2C ADP-glucose type~InterPro IPR011835:IPR013534~KEGG: tde:TDE1582 glycogen synthase~PFAM: Starch synthase catalytic region~PRIAM: Starch synthase~SPTR: Glycogen synthase%3B~TIGRFAM: Glycogen/starch synthases%2C ADP-glucose type~IMG reference gene:2504920415~PFAM: Starch synthase catalytic domain%3B Glycosyl transferases group 1~TIGRFAM: glycogen/starch synthases%2C ADP-glucose type gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1511 Trebr_1512 Trebr_1512 Trebr_1512 1784752 1785984 - Aspartate transaminase COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR004839~KEGG: dba:Dbac_3303 aspartate aminotransferase~PFAM: Aminotransferase%2C class I/II~PRIAM: Aspartate transaminase~SPTR: Aminotransferase class I and II%3B~IMG reference gene:2504920416~PFAM: Aminotransferase class I and II gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1512 Trebr_1513 Trebr_1513 Trebr_1513 1786272 1786997 + hypothetical protein IMG reference gene:2504920417 gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1513 Trebr_1514 Trebr_1514 Trebr_1514 1787008 1788111 + Mannose-1-phosphate guanylyltransferase COGs: COG0836 Mannose-1-phosphate guanylyltransferase~InterPro IPR005835~KEGG: sta:STHERM_c01790 mannose-1-phosphate guanylyltransferase~PFAM: Nucleotidyl transferase~PRIAM: Mannose-1-phosphate guanylyltransferase~SPTR: Mannose-1-phosphate guanylyltransferase%3B~IMG reference gene:2504920418~PFAM: Nucleotidyl transferase~TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1514 Trebr_1515 Trebr_1515 Trebr_1515 1788116 1789354 + N-acetylneuraminic acid synthase domain protein COGs: COG2089 Sialic acid synthase~InterPro IPR013132:IPR013974~KEGG: tde:TDE0960 NeuB family protein~PFAM: N-acetylneuraminic acid synthase%2C N-terminal%3B SAF domain~SPTR: NeuB family protein%3B~IMG reference gene:2504920419~PFAM: SAF domain%3B NeuB family gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1515 Trebr_1516 Trebr_1516 Trebr_1516 1789461 1789925 + SsrA-binding protein COGs: COG0691 tmRNA-binding protein~HAMAP: SsrA-binding protein~InterPro IPR000037~KEGG: tde:TDE1464 SsrA-binding protein~PFAM: SsrA-binding protein~SPTR: SsrA-binding protein%3B~TIGRFAM: SsrA-binding protein~IMG reference gene:2504920420~PFAM: SmpB protein~TIGRFAM: SsrA-binding protein gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1516 Trebr_1517 Trebr_1517 Trebr_1517 1789928 1790791 + hypothetical protein KEGG: tpp:TPASS_0183 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920421 gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1517 Trebr_1518 Trebr_1518 Trebr_1518 1790802 1791383 - SUA5/yciO/yrdC domain protein COGs: COG0009 Putative translation factor (SUA5)~InterPro IPR006070~KEGG: tde:TDE1462 SUA5/YciO/YrdC/YwlC family protein~PFAM: Sua5/YciO/YrdC%2C N-terminal~SPTR: Sua5/YciO/YrdC/YwlC family protein%3B~IMG reference gene:2504920422~PFAM: yrdC domain~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1518 Trebr_1519 Trebr_1519 Trebr_1519 1791380 1791904 - Septum formation initiator InterPro IPR007060~KEGG: tde:TDE1461 septum formation initiator family protein~PFAM: Septum formation initiator~SPTR: Septum formation initiator family protein%3B~IMG reference gene:2504920423~PFAM: Septum formation initiator gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1519 Trebr_1520 Trebr_1520 Trebr_1520 1792231 1795899 + hypothetical protein KEGG: vpo:Kpol_1058p4 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920424 gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1520 Trebr_1521 Trebr_1521 Trebr_1521 1795901 1796770 + hypothetical protein IMG reference gene:2504920425 gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1521 Trebr_1522 Trebr_1522 Trebr_1522 1796776 1798329 + protein of unknown function DUF115 COGs: COG2604 conserved hypothetical protein~InterPro IPR002826~KEGG: tde:TDE1458 hypothetical protein~PFAM: Protein of unknown function DUF115~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920426~PFAM: Protein of unknown function DUF115 gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1522 Trebr_1523 Trebr_1523 Trebr_1523 1798326 1799861 + protein of unknown function DUF115 COGs: COG2604 conserved hypothetical protein~InterPro IPR002826~KEGG: tde:TDE1457 hypothetical protein~PFAM: Protein of unknown function DUF115~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920427~PFAM: Protein of unknown function DUF115 gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1523 Trebr_1524 Trebr_1524 Trebr_1524 1799851 1801185 + GGDEF domain containing protein InterPro IPR000160~KEGG: tde:TDE1456 GGDEF domain-containing protein~SMART: Diguanylate cyclase%2C predicted~SPTR: GGDEF domain protein%3B~IMG reference gene:2504920428 gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1524 Trebr_1525 Trebr_1525 Trebr_1525 1801202 1801849 - hypothetical protein InterPro IPR019734~KEGG: tde:TDE1613 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920429 gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1525 Trebr_1526 Trebr_1526 Trebr_1526 1801858 1802931 - phosphoribosyl transferase domain-containing protein COGs: COG0035 Uracil phosphoribosyltransferase~KEGG: tde:TDE1612 phosphoribosyl transferase domain-containing protein~SPTR: Phosphoribosyl transferase domain protein%3B~IMG reference gene:2504920430 gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1526 Trebr_1527 Trebr_1527 Trebr_1527 1802967 1803899 - hypothetical protein IMG reference gene:2504920431 gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1527 Trebr_1528 Trebr_1528 Trebr_1528 1803886 1807083 - Isoleucyl-tRNA synthetase COGs: COG0060 Isoleucyl-tRNA synthetase~HAMAP: Isoleucyl-tRNA synthetase~InterPro IPR002300:IPR013155:IPR002301~KEGG: tde:TDE2663 isoleucyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ia%3B Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding~PRIAM: Isoleucine--tRNA ligase~SPTR: Isoleucyl-tRNA synthetase%3B~TIGRFAM: Isoleucyl-tRNA synthetase%2C class Ia~IMG reference gene:2504920432~PFAM: tRNA synthetases class I (I%2C L%2C M and V)%3B Anticodon-binding domain~TIGRFAM: isoleucyl-tRNA synthetase gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1528 Trebr_1529 Trebr_1529 Trebr_1529 1807214 1808080 - HhH-GPD family protein COGs: COG1194 A/G-specific DNA glycosylase~InterPro IPR003265~KEGG: tpp:TPASS_0343 possible A/G-specific adenine glycosylase~PFAM: HhH-GPD domain~SMART: HhH-GPD domain~SPTR: HhH-GPD family protein%3B~IMG reference gene:2504920433~PFAM: HhH-GPD superfamily base excision DNA repair protein%3B Helix-hairpin-helix motif gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1529 Trebr_1530 Trebr_1530 Trebr_1530 1808097 1808660 - Cytidylate kinase COGs: COG1102 Cytidylate kinase~HAMAP: Cytidylate kinase~InterPro IPR011892~KEGG: tde:TDE1087 cytidylate kinase~SPTR: Cytidylate kinase%3B~TIGRFAM: Cytidylate kinase%2C putative~IMG reference gene:2504920434~PFAM: Cytidylate kinase~TIGRFAM: cytidylate kinase%2C putative gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1530 Trebr_1531 Trebr_1531 Trebr_1531 1808787 1811528 - anti-sigma H sporulation factor%2C LonB COGs: COG0466 ATP-dependent Lon protease~InterProIPR003111:IPR003593:IPR003959:IPR008269:IPR 004815~KEGG: tde:TDE0670 ATP-dependent protease La~PFAM: Peptidase S16%2C lon C-terminal%3B Peptidase S16%2C lon N-terminal%3B ATPase%2C AAA-type%2C core~PRIAM: Endopeptidase La~SMART: Peptidase S16%2C lon N-terminal%3B ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent protease La%3B~TIGRFAM: Peptidase S16%2C ATP-dependent protease La~IMG reference gene:2504920435~PFAM: ATP-dependent protease La (LON) domain%3B ATPase family associated with various cellular activities (AAA)%3B Lon protease (S16) C-terminal proteolytic domain~TIGRFAM: ATP-dependent protease La gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1531 Trebr_1532 Trebr_1532 Trebr_1532 1811794 1813398 - serine/threonine protein kinase COGs: COG0515 Serine/threonine protein kinase~InterPro IPR020635:IPR002290:IPR017442~KEGG: sta:STHERM_c06970 serine/threonine-protein kinase Sps1~PFAM: Serine/threonine-protein kinase-like domain~SMART: Serine/threonine-protein kinase domain%3B Tyrosine-protein kinase%2C subgroup%2C catalytic domain~SPTR: Serine/threonine-protein kinase Sps1%3B~IMG reference gene:2504920436~PFAM: Protein kinase domain gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1532 Trebr_1533 Trebr_1533 Trebr_1533 1813424 1814461 - hypothetical protein KEGG: sta:STHERM_c06960 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920437 gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1533 Trebr_1534 Trebr_1534 Trebr_1534 1814487 1814831 - FHA domain containing protein COGs: COG1716 FOG: FHA domain~InterPro IPR000253~KEGG: sta:STHERM_c06930 hypothetical protein~PFAM: Forkhead-associated~SMART: Forkhead-associated~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920438~PFAM: FHA domain gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1534 Trebr_1535 Trebr_1535 Trebr_1535 1814864 1815433 - Crossover junction endodeoxyribonuclease ruvC COGs: COG0817 Holliday junction resolvasome endonuclease subunit~HAMAP: Crossover junction endodeoxyribonuclease RuvC~InterPro IPR002176~KEGG: tde:TDE1864 crossover junction endodeoxyribonuclease RuvC~PFAM: Crossover junction endodeoxyribonuclease RuvC~PRIAM: Crossover junction endodeoxyribonuclease~SPTR: Crossover junction endodeoxyribonuclease ruvC%3B~TIGRFAM: Crossover junction endodeoxyribonuclease RuvC~IMG reference gene:2504920439~PFAM: Crossover junction endodeoxyribonuclease RuvC~TIGRFAM: crossover junction endodeoxyribonuclease RuvC gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1535 Trebr_1536 Trebr_1536 Trebr_1536 1815423 1816163 - UPF0082 protein yeeN COGs: COG0217 conserved hypothetical protein~HAMAP: Protein of unknown function DUF28~InterPro IPR002876~KEGG: tde:TDE1487 hypothetical protein~PFAM: Protein of unknown function DUF28~SPTR: UPF0082 protein TDE_1487%3B~TIGRFAM: Protein of unknown function DUF28~IMG reference gene:2504920440~PFAM: Domain of unknown function DUF28~TIGRFAM: DNA-binding regulatory protein%2C YebC/PmpR family gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1536 Trebr_1537 Trebr_1537 Trebr_1537 1816569 1817519 + Ornithine carbamoyltransferase COGs: COG0078 Ornithine carbamoyltransferase~HAMAP: Ornithine carbamoyltransferase~InterPro IPR006132:IPR006131:IPR002292~KEGG: tmt:Tmath_0595 ornithine carbamoyltransferase~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding region~PRIAM: Ornithine carbamoyltransferase~SPTR: Ornithine carbamoyltransferase%3B~TIGRFAM: Ornithine carbamoyltransferase~IMG reference gene:2504920442~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding domain%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain~TIGRFAM: ornithine carbamoyltransferase gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1537 Trebr_1538 Trebr_1538 Trebr_1538 1817534 1817956 + hypothetical protein KEGG: tde:TDE1480 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920443 gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1538 Trebr_1539 Trebr_1539 Trebr_1539 1817959 1819233 + peptidase M24 COGs: COG0006 Xaa-Pro aminopeptidase~InterPro IPR000994~KEGG: nde:NIDE0254 peptidase M24~PFAM: Peptidase M24%2C structural domain~SPTR: Peptidase M24%3B~IMG reference gene:2504920444~PFAM: Metallopeptidase family M24 gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1539 Trebr_1540 Trebr_1540 Trebr_1540 1819217 1820221 + phosphoesterase RecJ domain protein COGs: COG0618 Exopolyphosphatase-related protein~InterPro IPR001667:IPR003156~KEGG: tde:TDE1479 DHH superfamily protein%2C subfamily 1~PFAM: Phosphoesterase%2C RecJ-like%3B Phosphoesterase%2C DHHA1~SPTR: DHH family protein%2C subfamily 1%3B~IMG reference gene:2504920445~PFAM: DHH family%3B DHHA1 domain gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1540 Trebr_1541 Trebr_1541 Trebr_1541 1820514 1821410 + hypothetical protein KEGG: tde:TDE2272 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920446 gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1541 Trebr_1542 Trebr_1542 Trebr_1542 1821423 1822100 + Nucleoside-triphosphatase rdgB COGs: COG0127 Xanthosine triphosphate pyrophosphatase~HAMAP: Nucleoside-triphosphatase rdgB~InterPro IPR002637~KEGG: tde:TDE2271 HAM1 protein~PFAM: Ham1-like protein~PRIAM: Nucleoside-triphosphatase~SPTR: Nucleoside-triphosphatase%3B~IMG reference gene:2504920447~PFAM: Ham1 family~TIGRFAM: non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1542 Trebr_1543 Trebr_1543 Trebr_1543 1822200 1822982 - Methyltransferase type 12 InterPro IPR013217~KEGG: has:Halsa_0354 methyltransferase type 12~PFAM: Methyltransferase type 12~SPTR: Methyltransferase type 12%3B~IMG reference gene:2504920448~PFAM: Methyltransferase domain gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1543 Trebr_1544 Trebr_1544 Trebr_1544 1823180 1824040 + flagellin domain protein COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR001492:IPR001029~KEGG: tde:TDE1477 flagellar filament core protein~PFAM: Flagellin%2C N-terminal%3B Flagellin%2C C-terminal~SPTR: Flagellar filament 31.3 kDa core protein%3B~IMG reference gene:2504920449~PFAM: Bacterial flagellin N-terminal helical region%3B Bacterial flagellin C-terminal helical region gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1544 Trebr_1545 Trebr_1545 Trebr_1545 1824387 1825244 + flagellin domain protein COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR001492:IPR001029~KEGG: ssm:Spirs_2598 flagellin domain protein~PFAM: Flagellin%2C N-terminal%3B Flagellin%2C C-terminal~SPTR: Flagellar filament 30.7 kDa core protein%3B~IMG reference gene:2504920450~PFAM: Bacterial flagellin N-terminal helical region%3B Bacterial flagellin C-terminal helical region gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1545 Trebr_1546 Trebr_1546 Trebr_1546 1825356 1825730 + flagellar protein FlaG protein InterPro IPR005186~KEGG: tde:TDE1473 flagellin FlaG%2C putative~PFAM: Flagellar protein FlaG protein~SPTR: Flagellin FlaG%2C putative%3B~IMG reference gene:2504920451~PFAM: FlaG protein gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1546 Trebr_1547 Trebr_1547 Trebr_1547 1825757 1827826 + flagellar hook-associated 2 domain-containing protein COGs: COG1345 Flagellar capping protein~InterPro IPR003481:IPR010809~KEGG: sta:STHERM_c07710 flagellar hook-associated protein 2~PFAM: Flagellar hook-associated 2%2C C-terminal%3B Flagellar hook-associated protein 2%2C N-terminal~SPTR: Flagellar hook-associated protein 2%3B~IMG reference gene:2504920452~PFAM: Flagellar hook-associated protein 2 C-terminus gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1547 Trebr_1548 Trebr_1548 Trebr_1548 1827840 1828433 + hypothetical protein KEGG: tpp:TPASS_0873 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920453 gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1548 Trebr_1549 Trebr_1549 Trebr_1549 1828490 1828756 + hypothetical protein KEGG: bhr:BH0187 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920454 gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1549 Trebr_1550 Trebr_1550 Trebr_1550 1828753 1829187 + Uncharacterized protein family UPF0079%2C ATPase COGs: COG0802 ATPase or kinase~InterPro IPR003442~KEGG: tde:TDE1469 hypothetical protein~PFAM: Uncharacterised protein family UPF0079%2C ATPase bacteria~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Uncharacterised protein family UPF0079%2C ATPase bacteria~IMG reference gene:2504920455~PFAM: Uncharacterised P-loop hydrolase UPF0079~TIGRFAM: ATPase%2C YjeE family gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1550 Trebr_1551 Trebr_1551 Trebr_1551 1829184 1829867 + universal protein YeaZ COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone~InterPro IPR000905~KEGG: sta:STHERM_c07660 peptidase M22%2C glycoprotease~PFAM: Peptidase M22%2C glycoprotease~SPTR: Glycoprotease family protein%3B~TIGRFAM: universal protein YeaZ~IMG reference gene:2504920456~PFAM: Glycoprotease family~TIGRFAM: universal bacterial protein YeaZ gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1551 Trebr_1552 Trebr_1552 Trebr_1552 1830019 1832595 - Hyaluronate lyase InterPro IPR012970:IPR003159~KEGG: bse:Bsel_0843 hyaluronate lyase~PFAM: Polysaccharide lyase family 8%2C central domain%3B Polysaccharide lyase 8%2C N-terminal alpha-helical~PRIAM: Hyaluronate lyase~SPTR: Polysaccharide lyase%2C family 8%3B~IMG reference gene:2504920457~PFAM: Polysaccharide lyase family 8%2C N terminal alpha-helical domain%3B Polysaccharide lyase family 8%2C super-sandwich domain gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1552 Trebr_1553 Trebr_1553 Trebr_1553 1832599 1834122 - hypothetical protein IMG reference gene:2504920458 gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1553 Trebr_1554 Trebr_1554 Trebr_1554 1834119 1837778 - Hyaluronate lyase InterProIPR003305:IPR003343:IPR012970:IPR003159:IPR 004103~KEGG: pjd:Pjdr2_3195 hyaluronate lyase~PFAM: Polysaccharide lyase 8%2C N-terminal alpha-helical%3B Bacterial Ig-like%2C group 2%3B Carbohydrate-binding%2C CenC-like%3B Polysaccharide lyase family 8%2C central domain%3B Polysaccharide lyase family 8%2C C-terminal~PRIAM: Hyaluronate lyase~SMART: Bacterial Ig-like%2C group 2~SPTR: Polysaccharide lyase family 8%2C super-sandwich domain protein%3B~IMG reference gene:2504920459~PFAM: Bacterial Ig-like domain (group 2)%3B Polysaccharide lyase family 8%2C N terminal alpha-helical domain%3B Polysaccharide lyase family 8%2C super-sandwich domain%3B Polysaccharide lyase family 8%2C C-terminal beta-sandwich domain gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1554 Trebr_1555 Trebr_1555 Trebr_1555 1837796 1838560 - hypothetical protein IMG reference gene:2504920460 gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1555 Trebr_1556 Trebr_1556 Trebr_1556 1838699 1840558 - Hyaluronate lyase InterPro IPR012970:IPR003159~KEGG: smf:Smon_0117 hyaluronate lyase~PFAM: Polysaccharide lyase 8%2C N-terminal alpha-helical%3B Polysaccharide lyase family 8%2C central domain~PRIAM: Hyaluronate lyase~SPTR: Hyaluronate lyase%3B~IMG reference gene:2504920461~PFAM: Polysaccharide lyase family 8%2C N terminal alpha-helical domain%3B Polysaccharide lyase family 8%2C super-sandwich domain gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1556 Trebr_1557 Trebr_1557 Trebr_1557 1840614 1842167 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: smf:Smon_0123 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504920462~PFAM: Bacterial extracellular solute-binding protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1557 Trebr_1558 Trebr_1558 Trebr_1558 1842198 1843076 - ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: smf:Smon_0122 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Protein LplC%3B~IMG reference gene:2504920463~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1558 Trebr_1559 Trebr_1559 Trebr_1559 1843121 1844032 - ABC-type transporter%2C integral membrane subunit COGs: COG4209 ABC-type polysaccharide transport system permease component~InterPro IPR000515~KEGG: smf:Smon_0121 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Protein LplB%3B~IMG reference gene:2504920464~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1559 Trebr_1560 Trebr_1560 Trebr_1560 1844159 1845004 - transcriptional regulator with cupin sensor%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR013096:IPR000005:IPR018060~KEGG: gym:GYMC10_4654 transcriptional regulator%2C AraC family~PFAM: Helix-turn-helix%2C AraC type%3B Cupin 2%2C conserved barrel~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%2C AraC family protein%3B~IMG reference gene:2504920465~PFAM: AraC-like ligand binding domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1560 Trebr_1561 Trebr_1561 Trebr_1561 1845166 1846554 + NADH:flavin oxidoreductase/NADH oxidase COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family~InterPro IPR001155~KEGG: tma:TM0428 oxidoreductase%2C putative~PFAM: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal~SPTR: Oxidoreductase%2C putative%3B~IMG reference gene:2504920466~PFAM: NADH:flavin oxidoreductase / NADH oxidase family gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1561 Trebr_1562 Trebr_1562 Trebr_1562 1846559 1847356 + 3-oxoacyl-(acyl-carrier-protein) reductase COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)~InterPro IPR002198~KEGG: dfe:Dfer_4758 3-ketoacyl-(acyl-carrier-protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR~PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920467~PFAM: short chain dehydrogenase gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1562 Trebr_1563 Trebr_1563 Trebr_1563 1847382 1849340 + fumarate reductase/succinate dehydrogenase flavoprotein domain protein COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit~InterPro IPR003953~KEGG: trq:TRQ2_0517 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920468~PFAM: FAD binding domain gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1563 Trebr_1564 Trebr_1564 Trebr_1564 1849352 1850338 + D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase~InterPro IPR006140~KEGG: aau:AAur_3944 2-hydroxyacid family dehydrogenase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding~SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B~IMG reference gene:2504920469~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1564 Trebr_1565 Trebr_1565 Trebr_1565 1850398 1851180 + Xylose isomerase domain-containing protein TIM barrel InterPro IPR012307~KEGG: aau:AAur_3698 AP endonuclease family 2 protein~PFAM: Xylose isomerase%2C TIM barrel domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920470~PFAM: Xylose isomerase-like TIM barrel gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1565 Trebr_1566 Trebr_1566 Trebr_1566 1851204 1853387 + transcriptional regulator%2C AraC family COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR000005:IPR018060~KEGG: chd:Calhy_0723 transcriptional regulator%2C AraC family~PFAM: Helix-turn-helix%2C AraC type~SMART: Helix-turn-helix%2C AraC domain~SPTR: Transcriptional regulator%2C AraC family%3B~IMG reference gene:2504920471~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1566 Trebr_1567 Trebr_1567 Trebr_1567 1853394 1855262 - hypothetical protein KEGG: tpp:TPASS_0369 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920472 gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1567 Trebr_1568 Trebr_1568 Trebr_1568 1855259 1855600 - hypothetical protein IMG reference gene:2504920473 gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1568 Trebr_1569 Trebr_1569 Trebr_1569 1855587 1858520 - chromosome segregation protein SMC COGs: COG1196 Chromosome segregation ATPase~InterPro IPR003395:IPR011890~KEGG: tde:TDE1496 chromosome partition protein SmC%2C putative~PFAM: RecF/RecN/SMC protein%2C N-terminal~SPTR: Chromosome segregation protein SMC%3B~TIGRFAM: Chromosome segregation protein SMC~IMG reference gene:2504920474~PFAM: RecF/RecN/SMC N terminal domain gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1569 Trebr_1570 Trebr_1570 Trebr_1570 1858671 1859828 - hypothetical protein KEGG: ssm:Spirs_1520 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920475 gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1570 Trebr_1571 Trebr_1571 Trebr_1571 1859848 1860621 - hypothetical protein IMG reference gene:2504920476 gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1571 Trebr_1572 Trebr_1572 Trebr_1572 1860766 1861653 - transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: fsu:Fisuc_1883 transcriptional regulator%2C LysR family~PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~SPTR: Transcriptional regulator%3B~IMG reference gene:2504920477~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family%3B LysR substrate binding domain gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1572 Trebr_1573 Trebr_1573 Trebr_1573 1861854 1862183 + hypothetical protein KEGG: ele:Elen_0955 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920478 gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1573 Trebr_1574 Trebr_1574 Trebr_1574 1862159 1862713 + hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920479 gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1574 Trebr_1575 Trebr_1575 Trebr_1575 1862740 1863099 + protein of unknown function DUF307 COGs: COG3304 membrane protein~InterPro IPR005185~KEGG: efa:EF3176 hypothetical protein~PFAM: Protein of unknown function DUF307~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920480~PFAM: Domain of unknown function (DUF307) gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1575 Trebr_1576 Trebr_1576 Trebr_1576 1863582 1864931 + Trigger factor COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)~HAMAP: Trigger factor~InterPro IPR008881:IPR001179:IPR008880:IPR005215~KEGG: tde:TDE1671 trigger factor~PFAM: Trigger factor%2C C-terminal%2C bacterial%3B Trigger factor%2C ribosome-binding%2C bacterial%3B Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~SPTR: Trigger factor%3B~TIGRFAM: Trigger factor~IMG reference gene:2504920483~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase%3B Bacterial trigger factor protein (TF) C-terminus%3B Bacterial trigger factor protein (TF)~TIGRFAM: trigger factor gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1576 Trebr_1577 Trebr_1577 Trebr_1577 1864968 1865582 + ATP-dependent Clp protease proteolytic subunit COGs: COG0740 Protease subunit of ATP-dependent Clp protease~HAMAP: ATP-dependent Clp protease proteolytic subunit~InterPro IPR001907~KEGG: tde:TDE1672 ATP-dependent Clp protease proteolytic subunit~PFAM: Peptidase S14%2C ClpP~PRIAM: Endopeptidase Clp~SPTR: ATP-dependent Clp protease proteolytic subunit 1%3B~IMG reference gene:2504920484~PFAM: Clp protease~TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1577 Trebr_1578 Trebr_1578 Trebr_1578 1865566 1866813 + ATP-dependent Clp protease ATP-binding subunit clpX COGs: COG1219 ATP-dependent protease Clp ATPase subunit~HAMAP: Clp protease%2C ATP-binding subunit ClpX~InterProIPR010603:IPR013093:IPR019489:IPR004487:IPR 003593~KEGG: ssm:Spirs_1294 ATP-dependent Clp protease%2C ATP-binding subunit ClpX~PFAM: ATPase associated with various cellular activities%2C AAA-2%3B Zinc finger%2C C4-type%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX%3B~TIGRFAM: Clp protease%2C ATP-binding subunit ClpX~IMG reference gene:2504920485~PFAM: AAA domain (Cdc48 subfamily)%3B C-terminal%2C D2-small domain%2C of ClpB protein%3B ClpX C4-type zinc finger~TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1578 Trebr_1579 Trebr_1579 Trebr_1579 1866863 1867978 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: tde:TDE1544 mannosyltransferase%2C putative~PFAM: Glycosyl transferase%2C group 1~SPTR: Mannosyltransferase%2C putative%3B~IMG reference gene:2504920486~PFAM: Glycosyl transferases group 1 gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1579 Trebr_1580 Trebr_1580 Trebr_1580 1868026 1869192 + DEAD/DEAH box helicase domain protein COGs: COG0513 Superfamily II DNA and RNA helicase~InterPro IPR011545:IPR001650:IPR014001~KEGG: cbb:CLD_2860 DEAD-box ATP dependent DNA helicase~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: ATP-dependent rRNA helicase RRP3%3B~IMG reference gene:2504920487~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1580 Trebr_1581 Trebr_1581 Trebr_1581 1869195 1869980 - phosphoribosyltransferase COGs: COG1040 amidophosphoribosyltransferase~InterPro IPR000836~KEGG: tde:TDE0972 ComF-related protein~PFAM: Phosphoribosyltransferase~SPTR: ComF-related protein%3B~IMG reference gene:2504920488 gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1581 Trebr_1582 Trebr_1582 Trebr_1582 1870041 1872674 - DNA mismatch repair protein mutS COGs: COG0249 Mismatch repair ATPase (MutS family)~HAMAP: DNA mismatch repair protein MutS%2C type 1~InterProIPR007695:IPR007860:IPR007696:IPR007861:IPR 000432:IPR005748~KEGG: tde:TDE2603 DNA mismatch repair protein MutS~PFAM: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core%3B DNA mismatch repair protein MutS-like%2C N-terminal%3B DNA mismatch repair protein MutS%2C connector%3B DNA mismatch repair protein MutS%2C clamp~SMART: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core~SPTR: DNA mismatch repair protein mutS%3B~TIGRFAM: DNA mismatch repair protein MutS%2C type 1~IMG reference gene:2504920489~PFAM: MutS family domain IV%3B MutS domain II%3B MutS domain V%3B MutS domain I%3B MutS domain III~TIGRFAM: DNA mismatch repair protein MutS gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1582 Trebr_1583 Trebr_1583 Trebr_1583 1872683 1873204 - outer membrane chaperone Skp (OmpH) COGs: COG2825 Outer membrane protein~InterPro IPR005632~KEGG: tpp:TPASS_0327 cationic outer membrane protein~PFAM: Outer membrane chaperone Skp (OmpH)~SPTR: Cationic outer membrane protein%3B~IMG reference gene:2504920490~PFAM: Outer membrane protein (OmpH-like) gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1583 Trebr_1584 Trebr_1584 Trebr_1584 1873216 1875642 - outer membrane protein assembly complex%2C YaeT protein COGs: COG4775 Outer membrane protein/protective antigen OMA87~InterPro IPR010827:IPR000184:IPR016474~KEGG: tde:TDE2601 surface antigen%2C putative~PFAM: Bacterial surface antigen (D15)%3B Surface antigen variable number~SPTR: Outer membrane protein 88%3B~TIGRFAM: Outer membrane assembly protein%2C YaeT~IMG reference gene:2504920491~PFAM: Surface antigen variable number repeat%3B Surface antigen~TIGRFAM: outer membrane protein assembly complex%2C YaeT protein gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1584 Trebr_1585 Trebr_1585 Trebr_1585 1875655 1880124 - protein of unknown function DUF490 InterPro IPR007452~KEGG: tde:TDE2600 hypothetical protein~PFAM: Protein of unknown function DUF490~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920492~PFAM: Family of unknown function (DUF490) gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1585 Trebr_1586 Trebr_1586 Trebr_1586 1880176 1880802 + Thymidylate kinase COGs: COG0125 Thymidylate kinase~HAMAP: Thymidylate kinase~InterPro IPR000062:IPR018094~KEGG: tde:TDE2599 thymidylate kinase~PFAM: Thymidylate kinase-like~PRIAM: dTMP kinase~SPTR: Thymidylate kinase%3B~TIGRFAM: Thymidylate kinase~IMG reference gene:2504920493~PFAM: Thymidylate kinase~TIGRFAM: thymidylate kinase gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1586 Trebr_1587 Trebr_1587 Trebr_1587 1880799 1881479 + hypothetical protein KEGG: tde:TDE2598 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920494 gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1587 Trebr_1588 Trebr_1588 Trebr_1588 1881489 1882649 + 3-dehydroquinate synthase COGs: COG0337 3-dehydroquinate synthetase~InterPro IPR002658~KEGG: sta:STHERM_c15820 3-dehydroquinate synthase~PFAM: 3-dehydroquinate synthase AroB~PRIAM: 3-dehydroquinate synthase~SPTR: 3-dehydroquinate synthase%3B~IMG reference gene:2504920495~PFAM: 3-dehydroquinate synthase~TIGRFAM: 3-dehydroquinate synthase gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1588 Trebr_1589 Trebr_1589 Trebr_1589 1882665 1883891 + Cysteine desulfurase COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase~InterPro IPR000192~KEGG: tde:TDE0103 aminotransferase%2C class-V~PFAM: Aminotransferase%2C class V/Cysteine desulfurase~PRIAM: Cysteine desulfurase~SPTR: Cysteine desulfurase%3B~IMG reference gene:2504920496~PFAM: Aminotransferase class-V gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1589 Trebr_1590 Trebr_1590 Trebr_1590 1883983 1885572 - Domain of unknown function DUF1957 COGs: COG1543 conserved hypothetical protein~InterPro IPR004300:IPR015293~KEGG: ssm:Spirs_1542 domain of unknown function DUF1957~PFAM: Domain of unknown function DUF1957%3B Glycoside hydrolase%2C family 57%2C core~SPTR: Glycosyl hydrolase%2C family 57%3B~IMG reference gene:2504920497~PFAM: Domain of unknown function (DUF1957)%3B Glycosyl hydrolase family 57 gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1590 Trebr_1591 Trebr_1591 Trebr_1591 1885587 1886252 - hypothetical protein KEGG: tde:TDE1093 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920498 gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1591 Trebr_1592 Trebr_1592 Trebr_1592 1886521 1888293 + phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I COGs: COG1109 Phosphomannomutase~InterPro IPR005844:IPR005845~KEGG: tde:TDE1998 phosphohexose mutase family protein~PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II~SPTR: Phosphoglucomutase%3B~IMG reference gene:2504920499~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain II%3B Phosphoglucomutase/phosphomannomutase%2C C-terminal domain%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1592 Trebr_1593 Trebr_1593 Trebr_1593 1888280 1888840 + DNA polymerase III%2C epsilon subunit COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type)~InterPro IPR013520:IPR006055:IPR006054~KEGG: tde:TDE1999 DNA polymerase III domain-containing protein~PFAM: Exonuclease%2C RNase T/DNA polymerase III~PRIAM: DNA-directed DNA polymerase~SMART: Exonuclease~SPTR: DNA polymerase III domain protein%3B~TIGRFAM: DNA polymerase III%2C epsilon subunit~IMG reference gene:2504920500~PFAM: Exonuclease~TIGRFAM: exonuclease%2C DNA polymerase III%2C epsilon subunit family gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1593 Trebr_1594 Trebr_1594 Trebr_1594 1888858 1889856 - RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)~InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284~KEGG: sta:STHERM_c10120 RNA polymerase sigma factor RpoD~PFAM: RNA polymerase sigma-70 region 4%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma-70 region 3~SPTR: RNA polymerase sigma factor%3B~TIGRFAM: RNA polymerase sigma-70~IMG reference gene:2504920501~PFAM: Sigma-70%2C region 4%3B Sigma-70 region 3%3B Sigma-70 region 2%3B Sigma-70 factor%2C region 1.2~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1594 Trebr_1595 Trebr_1595 Trebr_1595 1889975 1890829 - Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR018392:IPR016047:IPR002482~KEGG: tde:TDE1297 LysM/M23/M37 peptidase~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: LysM domain/M23/M37 peptidase domain protein%3B~IMG reference gene:2504920502~PFAM: Peptidase family M23%3B LysM domain gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1595 Trebr_1596 Trebr_1596 Trebr_1596 1890864 1892132 - hypothetical protein COGs: COG1896 hydrolase of HD superfamily~KEGG: tde:TDE1299 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920503 gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1596 Trebr_1597 Trebr_1597 Trebr_1597 1892152 1892985 - flagellar biosynthetic protein FliP COGs: COG1338 Flagellar biosynthesis pathway component FliP~InterPro IPR005838:IPR005837~KEGG: tde:TDE2760 flagellar biosynthesis protein FliP~PFAM: Type III secretion system inner membrane P protein~SPTR: Flagellar biosynthetic protein FliP%3B~TIGRFAM: Flagellar transport protein FliP~IMG reference gene:2504920504~PFAM: FliP family~TIGRFAM: flagellar biosynthetic protein FliP gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1597 Trebr_1598 Trebr_1598 Trebr_1598 1892982 1893704 - hypothetical protein KEGG: tde:TDE2761 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920505~PFAM: Flagellar biosynthesis protein%2C FliO gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1598 Trebr_1599 Trebr_1599 Trebr_1599 1893765 1894955 - flagellar motor switch protein FliN COGs: COG1886 Flagellar motor switch/type III secretory pathway protein~InterPro IPR001543:IPR012826~KEGG: tde:TDE2762 flagellar motor switch protein FliY~PFAM: Surface presentation of antigen (SpoA)~SPTR: Flagellar motor switch protein FliY%3B~TIGRFAM: Flagellar motor switch FliN~IMG reference gene:2504920506~PFAM: Surface presentation of antigens (SPOA)~TIGRFAM: flagellar motor switch protein FliN gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1599 Trebr_1600 Trebr_1600 Trebr_1600 1894948 1895982 - flagellar motor switch protein FliM COGs: COG1868 Flagellar motor switch protein~InterPro IPR001689:IPR001543~KEGG: tpp:TPASS_0721 flagellar motor switch protein FliM~PFAM: Flagellar motor switch protein FliM%3B Surface presentation of antigen (SpoA)~SPTR: Flagellar motor switch protein FliM%3B~TIGRFAM: Flagellar motor switch protein FliM~IMG reference gene:2504920507~PFAM: Surface presentation of antigens (SPOA)%3B Flagellar motor switch protein FliM~TIGRFAM: flagellar motor switch protein FliM gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1600 Trebr_1601 Trebr_1601 Trebr_1601 1896119 1896664 - flagellar basal body-associated protein FliL COGs: COG1580 Flagellar basal body-associated protein~InterPro IPR005503~KEGG: tde:TDE2764 flagellar basal body-associated protein FliL~PFAM: Flagellar basal body-associated protein FliL~SPTR: Flagellar protein FliL%3B~IMG reference gene:2504920508~PFAM: Flagellar basal body-associated protein FliL gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1601 Trebr_1602 Trebr_1602 Trebr_1602 1896697 1897407 - OmpA/MotB domain protein COGs: COG1360 Flagellar motor protein~InterPro IPR006665~KEGG: tde:TDE2765 flagellar motor protein MotB~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~SPTR: Chemotaxis protein MotB%3B~IMG reference gene:2504920509~PFAM: OmpA family gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1602 Trebr_1603 Trebr_1603 Trebr_1603 1897420 1898202 - MotA/TolQ/ExbB proton channel COGs: COG1291 Flagellar motor component~InterPro IPR002898~KEGG: tde:TDE2766 motility protein A~PFAM: MotA/TolQ/ExbB proton channel~SPTR: Motility protein A%3B~IMG reference gene:2504920510~PFAM: MotA/TolQ/ExbB proton channel family gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1603 Trebr_1604 Trebr_1604 Trebr_1604 1898223 1898420 - flagellar FlbD family protein COGs: COG1582 Uncharacterized protein possibly involved in motility~InterPro IPR009384~KEGG: tde:TDE2767 flagellar protein-related protein~PFAM: Flagellar~SPTR: Flagellar protein-related protein%3B~IMG reference gene:2504920511~PFAM: Flagellar protein (FlbD) gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1604 Trebr_1605 Trebr_1605 Trebr_1605 1898773 1900164 - flagellar hook-basal body protein COGs: COG1749 Flagellar hook protein FlgE~InterPro IPR001444:IPR011491:IPR010930:IPR020013~KEGG: tde:TDE2768 flagellar hook protein FlgE~PFAM: Protein of unknown function DUF1078%2C C-terminal%3B Flagellar basal body FlaE%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar hook protein FlgE%3B~TIGRFAM: Fagellar hook-basal body protein%2C FlgE/F/G~IMG reference gene:2504920512~PFAM: Domain of unknown function (DUF1078)%3B Flagella basal body rod protein%3B Flagellar basal body protein FlaE~TIGRFAM: flagellar basal-body rod protein FlgF%3B fagellar hook-basal body proteins gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1605 Trebr_1606 Trebr_1606 Trebr_1606 1900177 1900617 - flagellar hook capping protein COGs: COG1843 Flagellar hook capping protein~InterPro IPR005648~KEGG: ssm:Spirs_1569 flagellar hook capping protein~PFAM: Flagellar hook capping protein~SPTR: Flagellar hook capping protein%3B~IMG reference gene:2504920513~PFAM: Flagellar hook capping protein gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1606 Trebr_1607 Trebr_1607 Trebr_1607 1900686 1902029 - flagellar hook-length control protein InterPro IPR001635~KEGG: tde:TDE2770 flagellar hook-length control protein FliK~PFAM: Flagellar hook-length control protein~SPTR: Flagellar hook-length control protein FliK%3B~IMG reference gene:2504920514~PFAM: Flagellar hook-length control protein FliK gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1607 Trebr_1608 Trebr_1608 Trebr_1608 1902184 1902834 + Redox-sensing transcriptional repressor rex COGs: COG2344 AT-rich DNA-binding protein~HAMAP: Redox-sensing transcriptional repressor rex~InterPro IPR003781~KEGG: tde:TDE1912 redox-sensing transcriptional repressor REX~PFAM: CoA-binding~SPTR: Redox-sensing transcriptional repressor rex%3B~IMG reference gene:2504920515~PFAM: CoA binding domain%3B Putative DNA-binding protein N-terminus gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1608 Trebr_1609 Trebr_1609 Trebr_1609 1902837 1903916 + rRNA (guanine-N(2)-)-methyltransferase COGs: COG1092 SAM-dependent methyltransferase~KEGG: tde:TDE1913 hypothetical protein~PRIAM: rRNA (guanine-N(2)-)-methyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920516~PFAM: S-adenosylmethionine-dependent methyltransferase gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1609 Trebr_1610 Trebr_1610 Trebr_1610 1903965 1904996 + beta-lactamase COGs: COG0491 Zn-dependent hydrolase including glyoxylase~KEGG: cst:CLOST_1414 beta-lactamase-like~SPTR: Beta-lactamase domain-containing protein%3B~IMG reference gene:2504920517~PFAM: Metallo-beta-lactamase superfamily gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1610 Trebr_1611 Trebr_1611 Trebr_1611 1905196 1905591 + PUR-alpha/beta/gamma DNA/RNA-binding protein InterPro IPR006628~KEGG: tde:TDE0865 hypothetical protein~SMART: PUR-alpha/beta/gamma%2C DNA/RNA-binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920518~PFAM: Protein of unknown function (DUF3276)%3B PurA ssDNA and RNA-binding protein gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1611 Trebr_1612 Trebr_1612 Trebr_1612 1905817 1906410 - Ribonuclease H COGs: COG0164 Ribonuclease HII~InterPro IPR001352~KEGG: tde:TDE1547 ribonuclease HII~PFAM: Ribonuclease HII/HIII~PRIAM: Ribonuclease H~SPTR: Ribonuclease HII%3B~IMG reference gene:2504920519~PFAM: Ribonuclease HII gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1612 Trebr_1613 Trebr_1613 Trebr_1613 1906410 1907693 - hypothetical protein KEGG: rsp:RSP_6158 light-harvesting complex alpha subunit~SPTR: Ice-structuring glycoprotein%3B~IMG reference gene:2504920520 gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1613 Trebr_1614 Trebr_1614 Trebr_1614 1907695 1908735 - hypothetical protein KEGG: tcr:506269.40 mucin-associated surface protein (MASP)~SPTR: Mucin-associated surface protein (MASP)%2C putative%3B~IMG reference gene:2504920521 gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1614 Trebr_1615 Trebr_1615 Trebr_1615 1908732 1910966 - hypothetical protein KEGG: tde:TDE1546 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920522 gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1615 Trebr_1616 Trebr_1616 Trebr_1616 1910982 1911584 - phosphoribosyltransferase COGs: COG2236 phosphoribosyltransferase~InterPro IPR000836~KEGG: ssm:Spirs_2435 phosphoribosyl transferase domain protein~PFAM: Phosphoribosyltransferase~SPTR: Phosphoribosyl transferase domain protein%3B~IMG reference gene:2504920523~PFAM: Phosphoribosyl transferase domain gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1616 Trebr_1617 Trebr_1617 Trebr_1617 1911714 1912172 + hypothetical protein IMG reference gene:2504920524 gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1617 Trebr_1618 Trebr_1618 Trebr_1618 1912255 1912935 - hypothetical protein KEGG: dtu:Dtur_0045 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920525 gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1618 Trebr_1619 Trebr_1619 Trebr_1619 1912951 1914393 - integral membrane sensor signal transduction histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003661:IPR003594~KEGG: clj:CLJU_c30640 putative sensory transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SPTR: Putative His Kinase A domain protein%3B~IMG reference gene:2504920526~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1619 Trebr_1620 Trebr_1620 Trebr_1620 1914390 1915124 - two component transcriptional regulator%2C winged helix family COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain~InterPro IPR001789:IPR001867~KEGG: swo:Swol_2177 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region~SPTR: Response regulator receiver domain protein%3B~IMG reference gene:2504920527~PFAM: Response regulator receiver domain%3B Transcriptional regulatory protein%2C C terminal gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1620 Trebr_1621 Trebr_1621 Trebr_1621 1915173 1916015 - 4-deoxy-L-threo-5-hexosulose-uronateketol-isomerase COGs: COG3717 5-keto 4-deoxyuronate isomerase~HAMAP: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase~InterPro IPR007045~KEGG: csh:Closa_3486 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase~PFAM: 5-keto 4-deoxyuronate isomerase~PRIAM: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase~SPTR: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase%3B~IMG reference gene:2504920528~PFAM: KduI/IolB family gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1621 Trebr_1622 Trebr_1622 Trebr_1622 1916265 1917779 + Anthranilate synthase COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I~InterPro IPR006805:IPR015890~KEGG: fsu:Fisuc_0137 anthranilate synthase~PFAM: Chorismate binding%2C C-terminal%3B Anthranilate synthase component I%2C N-terminal~PRIAM: Anthranilate synthase~SPTR: Anthranilate synthase%3B~IMG reference gene:2504920529~PFAM: chorismate binding enzyme%3B Anthranilate synthase component I%2C N terminal region gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1622 Trebr_1623 Trebr_1623 Trebr_1623 1917964 1919571 + Anthranilate phosphoribosyltransferase COGs: COG0547 Anthranilate phosphoribosyltransferase~HAMAP: Anthranilate phosphoribosyl transferase~InterProIPR000991:IPR017459:IPR000312:IPR005940:IPR 006221~KEGG: fsu:Fisuc_0138 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase~PFAM: Glycosyl transferase%2C family 3%3B Glutamine amidotransferase class-I%2C C-terminal%3B Glycosyl transferase%2C family 3%2C N-terminal~PRIAM: Anthranilate synthase.%2C Anthranilate phosphoribosyltransferase~SPTR: Anthranilate phosphoribosyltransferase%3B~TIGRFAM: Anthranilate phosphoribosyl transferase%3B Glutamine amidotransferase of anthranilate synthase~IMG reference gene:2504920530~PFAM: Glutamine amidotransferase class-I%3B Glycosyl transferase family%2C a/b domain%3B Glycosyl transferase family%2C helical bundle domain~TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase%3B anthranilate phosphoribosyltransferase gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1623 Trebr_1624 Trebr_1624 Trebr_1624 1919564 1921156 + Indole-3-glycerol-phosphate synthase.%2C Phosphoribosylanthranilate isomerase COGs: COG0134 Indole-3-glycerol phosphate synthase~InterPro IPR013798:IPR001240~KEGG: fsu:Fisuc_0176 indole-3-glycerol-phosphate synthase.%2C phosphoribosylanthranilate isomerase~PFAM: Indole-3-glycerol phosphate synthase%3B N-(5'phosphoribosyl)anthranilate isomerase (PRAI)~PRIAM: Indole-3-glycerol-phosphate synthase.%2C Phosphoribosylanthranilate isomerase~SPTR: N-(5'-phosphoribosyl)anthranilate isomerase%3B~IMG reference gene:2504920531~PFAM: Indole-3-glycerol phosphate synthase%3B N-(5'phosphoribosyl)anthranilate (PRA) isomerase gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1624 Trebr_1625 Trebr_1625 Trebr_1625 1921175 1922581 + Tryptophan synthase beta chain COGs: COG0133 Tryptophan synthase beta chain~HAMAP: Tryptophan synthase beta chain~InterPro IPR001926:IPR006654~KEGG: fsu:Fisuc_0179 tryptophan synthase subunit beta~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~PRIAM: Tryptophan synthase~SPTR: Tryptophan synthase beta chain%3B~TIGRFAM: Tryptophan synthase%2C beta chain~IMG reference gene:2504920532~PFAM: Pyridoxal-phosphate dependent enzyme~TIGRFAM: tryptophan synthase%2C beta subunit gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1625 Trebr_1626 Trebr_1626 Trebr_1626 1922606 1923427 + Tryptophan synthase alpha chain COGs: COG0159 Tryptophan synthase alpha chain~HAMAP: Tryptophan synthase%2C alpha chain~InterPro IPR002028~KEGG: fsu:Fisuc_0180 tryptophan synthase%2C alpha subunit~PFAM: Tryptophan synthase%2C alpha chain~PRIAM: Tryptophan synthase~SPTR: Tryptophan synthase alpha chain%3B~TIGRFAM: Tryptophan synthase%2C alpha chain~IMG reference gene:2504920533~PFAM: Tryptophan synthase alpha chain~TIGRFAM: tryptophan synthase%2C alpha subunit gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1626 Trebr_1627 Trebr_1627 Trebr_1627 1923514 1925070 - Beta-N-acetylhexosaminidase COGs: COG3525 N-acetyl-beta-hexosaminidase~InterPro IPR015882:IPR015883~KEGG: beta-N-acetylhexosaminidase~PFAM: Glycoside hydrolase%2C family 20%2C catalytic core%3B Beta-N-acetylhexosaminidase-like~PRIAM: Beta-N-acetylhexosaminidase~SPTR: Beta-N-acetylhexosaminidase%3B~IMG reference gene:2504920534~PFAM: Glycosyl hydrolase family 20%2C catalytic domain%3B Glycosyl hydrolase family 20%2C domain 2 gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1627 Trebr_1628 Trebr_1628 Trebr_1628 1925219 1927537 + hypothetical protein KEGG: mat:MARTH_orf576 hypothetical lipoprotein~SPTR: Hypothetical lipoprotein%3B~IMG reference gene:2504920535 gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1628 Trebr_1629 Trebr_1629 Trebr_1629 1927744 1929393 + hypothetical protein KEGG: mat:MARTH_orf722 hypothetical lipoprotein~SPTR: Hypothetical lipoprotein%3B~IMG reference gene:2504920536 gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1629 Trebr_1630 Trebr_1630 Trebr_1630 1929734 1930324 - DNA-3-methyladenine glycosylase I COGs: COG2818 3-methyladenine DNA glycosylase~InterPro IPR005019~KEGG: ssm:Spirs_2955 DNA-3-methyladenine glycosylase I~PFAM: Methyladenine glycosylase~PRIAM: DNA-3-methyladenine glycosylase I~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920537~PFAM: Methyladenine glycosylase~TIGRFAM: DNA-3-methyladenine glycosylase I gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1630 Trebr_1631 Trebr_1631 Trebr_1631 1930413 1931618 - polysaccharide biosynthesis protein CapD COGs: COG1086 nucleoside-diphosphate sugar epimerase~InterPro IPR003869~KEGG: vvu:VV1_0811 nucleoside-diphosphate sugar epimerase~PFAM: Polysaccharide biosynthesis protein CapD-like~SPTR: UDP-N-acetylglucosamine 4%2C6-dehydratase%3B~IMG reference gene:2504920538~PFAM: Polysaccharide biosynthesis protein gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1631 Trebr_1632 Trebr_1632 Trebr_1632 1931704 1932369 - sugar transferase COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis~InterPro IPR003362~KEGG: pna:Pnap_3116 sugar transferase~PFAM: Bacterial sugar transferase~SPTR: Probable sugar transferase%2C WBGY%3B~IMG reference gene:2504920539~PFAM: Bacterial sugar transferase gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1632 Trebr_1633 Trebr_1633 Trebr_1633 1932366 1932650 - hypothetical protein IMG reference gene:2504920540 gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1633 Trebr_1634 Trebr_1634 Trebr_1634 1932661 1933488 - glycosyl transferase family 2 COGs: COG1216 glycosyltransferase~InterPro IPR001173~KEGG: mtp:Mthe_0965 glycosyl transferase family protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase%2C family 2%3B~IMG reference gene:2504920541~PFAM: Glycosyl transferase family 2 gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1634 Trebr_1635 Trebr_1635 Trebr_1635 1933508 1934653 - hypothetical protein KEGG: mma:MM_2099 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920542~PFAM: Acyltransferase family gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1635 Trebr_1636 Trebr_1636 Trebr_1636 1934656 1935084 - ribose 5-phosphate isomerase B COGs: COG0698 Ribose 5-phosphate isomerase RpiB~InterPro IPR003500:IPR004785~KEGG: ipo:Ilyop_1005 ribose-5-phosphate isomerase~PFAM: Ribose/galactose isomerase~PRIAM: Galactose-6-phosphate isomerase~SPTR: Ribose 5-phosphate isomerase B%3B~TIGRFAM: Ribose 5-phosphate isomerase B%3B Ribose/galactose isomerase~IMG reference gene:2504920543~PFAM: Ribose/Galactose Isomerase~TIGRFAM: ribose 5-phosphate isomerase B%3B sugar-phosphate isomerases%2C RpiB/LacA/LacB family gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1636 Trebr_1637 Trebr_1637 Trebr_1637 1935081 1935794 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase~HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~InterPro IPR001228~KEGG: fsu:Fisuc_0980 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1%3B~IMG reference gene:2504920544~PFAM: Uncharacterized protein family UPF0007~TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1637 Trebr_1638 Trebr_1638 Trebr_1638 1935796 1936857 - Histidinol-phosphate transaminase COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase~InterPro IPR004839~KEGG: cno:NT01CX_1063 histidinol-phosphate aminotransferase~PFAM: Aminotransferase%2C class I/II~PRIAM: Histidinol-phosphate transaminase~SPTR: Histidinol-phosphate aminotransferase%3B~IMG reference gene:2504920545~PFAM: Aminotransferase class I and II~TIGRFAM: histidinol-phosphate aminotransferase gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1638 Trebr_1639 Trebr_1639 Trebr_1639 1936964 1938121 - CDP-glycerol:poly(glycerophosphate)glycerophosphotransferase COGs: COG1887 Putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC~InterPro IPR007554~KEGG: pdi:BDI_1348 putative glycero-phosphotransferase~PFAM: CDP-glycerol glycerophosphotransferase~SPTR: Putative glycero-phosphotransferase%3B~IMG reference gene:2504920546~PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1639 Trebr_1640 Trebr_1640 Trebr_1640 1938135 1939250 - hypothetical protein KEGG: ccb:Clocel_2378 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920547 gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1640 Trebr_1641 Trebr_1641 Trebr_1641 1939240 1940664 - hypothetical protein KEGG: str:Sterm_2396 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920548 gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1641 Trebr_1642 Trebr_1642 Trebr_1642 1940661 1941815 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family COGs: COG1778 Low specificity phosphatase (HAD superfamily)~InterPro IPR003329:IPR005834:IPR010023:IPR006549~KEGG: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family~PFAM: Haloacid dehalogenase-like hydrolase%3B Acylneuraminate cytidylyltransferase~PRIAM: N-acylneuraminate cytidylyltransferase.%2C 3-deoxy-manno-octulosonate-8-phosphatase~SPTR: N-acylneuraminate cytidylyltransferase%3B~TIGRFAM: Phosphatase KdsC%3B HAD-superfamily hydrolase%2C subfamily IIIA~IMG reference gene:2504920549~PFAM: Cytidylyltransferase%3B haloacid dehalogenase-like hydrolase~TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family%3B HAD-superfamily hydrolase%2C subfamily IIIA gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1642 Trebr_1643 Trebr_1643 Trebr_1643 1941824 1942699 - N-acetylneuraminate synthase COGs: COG2089 Sialic acid synthase~InterPro IPR013132~KEGG: N-acetylneuraminate synthase~PFAM: N-acetylneuraminic acid synthase%2C N-terminal~PRIAM: N-acetylneuraminate synthase~SPTR: N-acylneuraminate-9-phosphate synthase%3B~IMG reference gene:2504920550~PFAM: NeuB family gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1643 Trebr_1644 Trebr_1644 Trebr_1644 1942703 1944160 - polysaccharide biosynthesis protein COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid~InterPro IPR002797~KEGG: ere:EUBREC_2630 O-antigen transporter~PFAM: Polysaccharide biosynthesis protein~SPTR: Putative O-antigen transporter%3B~IMG reference gene:2504920551~PFAM: Polysaccharide biosynthesis protein gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1644 Trebr_1645 Trebr_1645 Trebr_1645 1944757 1945284 - hypothetical protein KEGG: ssm:Spirs_1333 NusG antitermination factor~SPTR: NusG antitermination factor%3B~IMG reference gene:2504920552~PFAM: KOW motif gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1645 Trebr_1646 Trebr_1646 Trebr_1646 1945338 1946060 - hypothetical protein IMG reference gene:2504920553 gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1646 Trebr_1647 Trebr_1647 Trebr_1647 1946175 1946501 + helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE1170 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504920554~PFAM: Helix-turn-helix gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1647 Trebr_1648 Trebr_1648 Trebr_1648 1946821 1947756 + Conserved hypothetical protein CHP01784 InterPro IPR010106~KEGG: afn:Acfer_1259 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP01784~IMG reference gene:2504920555~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1648 Trebr_1649 Trebr_1649 Trebr_1649 1947829 1949008 - pseudogene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1649 Trebr_1650 Trebr_1650 Trebr_1650 1948999 1950222 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: bad:BAD_1387 spore coat protein~PFAM: Glycosyl transferase%2C group 1~SPTR: Spore coat protein%3B~IMG reference gene:2504920557~PFAM: Glycosyl transferases group 1 gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1650 Trebr_1651 Trebr_1651 Trebr_1651 1950219 1951175 - glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: sne:SPN23F_03260 putative glycosyltransferase WchA~PFAM: Glycosyl transferase%2C family 2~SPTR: Putative glycosyltransferase WchA%3B~IMG reference gene:2504920558~PFAM: Glycosyl transferase family 2 gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1651 Trebr_1652 Trebr_1652 Trebr_1652 1951177 1952367 - hypothetical protein KEGG: sec:SC2098 O-antigen polymerase~SPTR: O-antigen polymerase%3B~IMG reference gene:2504920559 gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1652 Trebr_1653 Trebr_1653 Trebr_1653 1952364 1953533 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: zpr:ZPR_0557 glycosyl transferase~PFAM: Glycosyl transferase%2C group 1~SPTR: Putative glycosyltransferase HI1698%3B~IMG reference gene:2504920560~PFAM: Glycosyl transferases group 1 gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1653 Trebr_1654 Trebr_1654 Trebr_1654 1953578 1954624 - hypothetical protein KEGG: bfs:BF2794 hypothetical protein~SPTR: WfaX%3B~IMG reference gene:2504920561~PFAM: Polysaccharide pyruvyl transferase gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1654 Trebr_1655 Trebr_1655 Trebr_1655 1954803 1955006 - hypothetical protein KEGG: cjd:JJD26997_0963 hypothetical protein~SPTR: Putative RelE/StbE family addiction module toxin%3B~manually curated~IMG reference gene:2504920562 gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1655 Trebr_1656 Trebr_1656 Trebr_1656 1954978 1955190 - hypothetical protein IMG reference gene:2504920563 gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1656 Trebr_1657 Trebr_1657 Trebr_1657 1955236 1956471 - coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit~InterPro IPR001450:IPR007525~KEGG: amt:Amet_0212 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein~PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C C-terminal%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein%3B~IMG reference gene:2504920564~PFAM: Coenzyme F420 hydrogenase/dehydrogenase%2C beta subunit C terminus gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1657 Trebr_1658 Trebr_1658 Trebr_1658 1956461 1958011 - polysaccharide biosynthesis protein InterPro IPR002797~KEGG: dfe:Dfer_0062 polysaccharide biosynthesis protein~PFAM: Polysaccharide biosynthesis protein~SPTR: Polysaccharide biosynthesis protein%3B~IMG reference gene:2504920565~PFAM: Polysaccharide biosynthesis protein gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1658 Trebr_1659 Trebr_1659 Trebr_1659 1958008 1958892 - hypothetical protein IMG reference gene:2504920566 gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1659 Trebr_1660 Trebr_1660 Trebr_1660 1958972 1959292 + helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE1170 DNA-binding protein~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~manually curated~IMG reference gene:2504920567~PFAM: Bacteriophage CI repressor helix-turn-helix domain gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1660 Trebr_1661 Trebr_1661 Trebr_1661 1959502 1960458 + ribosome biogenesis GTPase RsgA COGs: COG1162 GTPase~HAMAP: ribosome biogenesis GTPase RsgA~InterPro IPR004881~KEGG: tde:TDE1449 GTPase YjeQ~PFAM: GTPase EngC~SPTR: Ribosome small subunit-dependent GTPase A%3B~TIGRFAM: GTPase EngC~IMG reference gene:2504920568~PFAM: Protein of unknown function%2C DUF258~TIGRFAM: ribosome small subunit-dependent GTPase A gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1661 Trebr_1662 Trebr_1662 Trebr_1662 1960482 1963094 + MutS2 protein COGs: COG1193 Mismatch repair ATPase (MutS family)~HAMAP: MutS2 protein~InterPro IPR000432:IPR002625:IPR007696~KEGG: tde:TDE1450 MutS2 family protein~PFAM: Smr protein/MutS2 C-terminal%3B DNA mismatch repair protein MutS%2C C-terminal~SMART: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core%3B Smr protein/MutS2 C-terminal~SPTR: MutS2 protein%3B~IMG reference gene:2504920569~PFAM: MutS domain V%3B Smr domain gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1662 Trebr_1663 Trebr_1663 Trebr_1663 1963195 1963845 - putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~InterPro IPR000551:IPR002178:IPR010093~KEGG: tde:TDE1079 DNA-binding protein/PTS system%2C IIA component~PFAM: HTH transcriptional regulator%2C MerR%3B Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: DNA-binding protein/PTS system%2C IIA component%3B~TIGRFAM: Excisionase/Xis%2C DNA-binding~IMG reference gene:2504920570~PFAM: Prophage CP4-57 regulatory protein (AlpA)%3B Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2~TIGRFAM: DNA binding domain%2C excisionase family gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1663 Trebr_1664 Trebr_1664 Trebr_1664 1963930 1964337 - cytidine deaminase COGs: COG0295 Cytidine deaminase~InterPro IPR002125:IPR006262~KEGG: tde:TDE1931 cytidine deaminase~PFAM: CMP/dCMP deaminase%2C zinc-binding~SPTR: Cytidine deaminase%3B~TIGRFAM: Cytidine deaminase%2C homotetrameric~IMG reference gene:2504920571~PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region~TIGRFAM: cytidine deaminase%2C homotetrameric gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1664 Trebr_1665 Trebr_1665 Trebr_1665 1964458 1965540 + hypothetical protein KEGG: tpp:TPASS_0783 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920572 gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1665 Trebr_1666 Trebr_1666 Trebr_1666 1965566 1966441 + Peptidase M23 InterPro IPR016047~KEGG: tde:TDE1929 hypothetical protein~PFAM: Peptidase M23~SPTR: M23 peptidase domain protein%3B~IMG reference gene:2504920573~PFAM: Peptidase family M23 gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1666 Trebr_1667 Trebr_1667 Trebr_1667 1966558 1967154 - nitrogen-fixing NifU domain protein COGs: COG0822 NifU homolog involved in Fe-S cluster formation~InterPro IPR002871:IPR007419~KEGG: plt:Plut_0236 IscU protein~PFAM: NIF system FeS cluster assembly%2C NifU%2C N-terminal%3B BFD-like [2Fe-2S]-binding region~SPTR: IscU protein%3B~IMG reference gene:2504920574~PFAM: NifU-like N terminal domain%3B BFD-like [2Fe-2S] binding domain gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1667 Trebr_1668 Trebr_1668 Trebr_1668 1967178 1968344 - Cysteine desulfurase COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase~InterPro IPR000192~KEGG: ssm:Spirs_3170 cysteine desulfurase~PFAM: Aminotransferase%2C class V/Cysteine desulfurase~PRIAM: Cysteine desulfurase~SPTR: Cysteine desulfurase%3B~IMG reference gene:2504920575~PFAM: Aminotransferase class-V~TIGRFAM: cysteine desulfurase NifS gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1668 Trebr_1669 Trebr_1669 Trebr_1669 1968349 1969707 - tRNA-specific 2-thiouridylase mnmA COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain~HAMAP: tRNA-specific 2-thiouridylase~InterPro IPR018318:IPR004506~KEGG: fsu:Fisuc_1073 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase~PFAM: tRNA methyl transferase-like~SPTR: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase%3B~manually curated~IMG reference gene:2504920576~PFAM: tRNA methyl transferase gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1669 Trebr_1670 Trebr_1670 Trebr_1670 1969861 1970721 - Phosphomethylpyrimidine kinase type-1 COGs: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase~InterPro IPR013749~KEGG: dhd:Dhaf_2653 phosphomethylpyrimidine kinase type-1~PFAM: Phosphomethylpyrimidine kinase type-1~SPTR: Phosphomethylpyrimidine kinase type-1%3B~IMG reference gene:2504920577~PFAM: Phosphomethylpyrimidine kinase gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1670 Trebr_1671 Trebr_1671 Trebr_1671 1970826 1972355 + transcriptional regulator%2C GntR family COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs~InterPro IPR000524~KEGG: dhd:Dhaf_1076 transcriptional regulator%2C GntR family with aminotransferase domain~PFAM: HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920578~PFAM: Bacterial regulatory proteins%2C gntR family%3B Aminotransferase class I and II gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1671 Trebr_1672 Trebr_1672 Trebr_1672 1972482 1974014 - Capsule synthesis protein%2C CapA COGs: COG2843 Putative protein of poly-gamma-glutamate biosynthesis (capsule formation)~InterPro IPR019079~KEGG: ssm:Spirs_2284 capsule synthesis protein%2C CapA~PFAM: Capsule synthesis protein%2C CapA~SPTR: Capsule synthesis protein%2C CapA%3B~IMG reference gene:2504920579~PFAM: Bacterial capsule synthesis protein PGA_cap gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1672 Trebr_1673 Trebr_1673 Trebr_1673 1974089 1975747 + Na/Pi-cotransporter II-related protein COGs: COG1283 Na+/phosphate symporter~InterPro IPR003841:IPR008170:IPR004633~KEGG: tde:TDE1964 Na/Pi cotransporter family protein~PFAM: Na/Pi-cotransporter%3B PhoU~SPTR: Na/Pi cotransporter family protein%3B~TIGRFAM: Na/Pi co-transporter II-related~manually curated~IMG reference gene:2504920580~PFAM: Na+/Pi-cotransporter%3B PhoU domain~TIGRFAM: Na/Pi-cotransporter gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1673 Trebr_1674 Trebr_1674 Trebr_1674 1975814 1977238 - Adenylosuccinate lyase COGs: COG0015 Adenylosuccinate lyase~InterPro IPR000362~KEGG: tde:TDE1499 adenylosuccinate lyase%2C putative~PFAM: Fumarate lyase~PRIAM: Adenylosuccinate lyase~SPTR: Adenylosuccinate lyase%2C putative%3B~IMG reference gene:2504920581~PFAM: Lyase gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1674 Trebr_1675 Trebr_1675 Trebr_1675 1977275 1978606 + putative signal transduction histidine kinase COGs: COG4585 Signal transduction histidine kinase~InterPro IPR011712:IPR003594~KEGG: ssm:Spirs_1060 integral membrane sensor signal transduction histidine kinase~PFAM: Signal transduction histidine kinase%2C subgroup 3%2C dimerisation and phosphoacceptor region%3B ATP-binding region%2C ATPase-like~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504920582~PFAM: Histidine kinase%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1675 Trebr_1676 Trebr_1676 Trebr_1676 1978599 1979291 + two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR001789:IPR000792~KEGG: ssm:Spirs_0377 two component transcriptional regulator%2C LuxR family~PFAM: Signal transduction response regulator%2C receiver region%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region%3B Transcription regulator LuxR%2C C-terminal~SPTR: Two component transcriptional regulator%2C LuxR family%3B~IMG reference gene:2504920583~PFAM: Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1676 Trebr_1677 Trebr_1677 Trebr_1677 1979541 1980779 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: ssm:Spirs_0548 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504920584~PFAM: Bacterial extracellular solute-binding protein gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1677 Trebr_1678 Trebr_1678 Trebr_1678 1980977 1981894 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: ssm:Spirs_0549 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504920585~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1678 Trebr_1679 Trebr_1679 Trebr_1679 1981899 1982732 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: ssm:Spirs_0550 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504920586~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1679 Trebr_1680 Trebr_1680 Trebr_1680 1982782 1982946 - hypothetical protein IMG reference gene:2504920587 gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1680 Trebr_1681 Trebr_1681 Trebr_1681 1982997 1983758 - Polyamine-transporting ATPase COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components~InterPro IPR003439:IPR003593~KEGG: pva:Pvag_3503 putative ABC transport system%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Polyamine-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504920588~PFAM: ABC transporter gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1681 Trebr_1682 Trebr_1682 Trebr_1682 1983748 1985403 - ABC-type transporter%2C integral membrane subunit COGs: COG1178 ABC-type Fe3+ transport system permease component~InterPro IPR000515~KEGG: tde:TDE0144 thiamine ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Thiamine ABC transporter%2C permease protein%3B~IMG reference gene:2504920589~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1682 Trebr_1683 Trebr_1683 Trebr_1683 1985417 1986433 - ABC transporter%2C periplasmic binding protein%2C thiB subfamily COGs: COG4143 ABC-type thiamine transport system periplasmic component~InterPro IPR006059:IPR005948~KEGG: tde:TDE0143 thiamine ABC transporter%2C thiamine-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Thiamine-binding periplasmic protein%3B~TIGRFAM: Thiamine ABC transporter periplasmic binding protein~IMG reference gene:2504920590~PFAM: Bacterial extracellular solute-binding protein~TIGRFAM: ABC transporter periplasmic binding protein%2C thiB subfamily gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1683 Trebr_1684 Trebr_1684 Trebr_1684 1986731 1987327 + regulatory protein TetR InterPro IPR001647~KEGG: ccb:Clocel_4085 transcriptional regulator%2C TetR family~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%2C TetR family%3B~IMG reference gene:2504920591~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1684 Trebr_1685 Trebr_1685 Trebr_1685 1987337 1988737 + Cyclomaltodextrinase COGs: COG0366 Glycosidase~InterPro IPR006047:IPR006589~KEGG: alpha amylase catalytic subunit~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region~PRIAM: Cyclomaltodextrinase~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~SPTR: Alpha-amylase 3%3B~IMG reference gene:2504920592~PFAM: Alpha amylase%2C catalytic domain gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1685 Trebr_1686 Trebr_1686 Trebr_1686 1988891 1990276 - sodium ion-translocating decarboxylase%2C beta subunit COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit~InterPro IPR005661~KEGG: tpp:TPASS_0057 oxaloacetate decarboxylase%2C subunit beta~PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~PRIAM: Oxaloacetate decarboxylase~SPTR: Oxaloacetate decarboxylase%2C subunit beta (OadB)%3B~TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C beta subunit~IMG reference gene:2504920593~PFAM: subunit~TIGRFAM: sodium ion-translocating decarboxylase%2C beta subunit gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1686 Trebr_1687 Trebr_1687 Trebr_1687 1990291 1992357 - oxaloacetate decarboxylase alpha subunit COGs: COG5016 Pyruvate/oxaloacetate carboxyltransferase~InterPro IPR000891:IPR003379:IPR000089:IPR005776~KEGG: tpp:TPASS_0056 pyruvate carboxylase subunit B~PFAM: Conserved carboxylase region%3B Pyruvate carboxyltransferase%3B Biotin/lipoyl attachment~PRIAM: Oxaloacetate decarboxylase~SPTR: Oxaloacetate decarboxylase alpha subunit%3B~TIGRFAM: Oxaloacetate decarboxylase%2C alpha subunit~IMG reference gene:2504920594~PFAM: HMGL-like%3B Biotin-requiring enzyme%3B Conserved carboxylase domain~TIGRFAM: oxaloacetate decarboxylase alpha subunit gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1687 Trebr_1688 Trebr_1688 Trebr_1688 1992375 1992617 - sodium pump decarboxylase%2C gamma subunit InterPro IPR005899~PFAM: Sodium ion-translocating decarboxylase~TIGRFAM: Sodium ion-translocating decarboxylase~IMG reference gene:2504920595~PFAM: Oxaloacetate decarboxylase%2C gamma chain~TIGRFAM: sodium pump decarboxylases%2C gamma subunit gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1688 Trebr_1689 Trebr_1689 Trebr_1689 1992778 1993557 - dihydrodipicolinate reductase COGs: COG0289 Dihydrodipicolinate reductase~InterPro IPR000846:IPR011770~KEGG: sta:STHERM_c08680 dihydrodipicolinate reductase~PFAM: Dihydrodipicolinate reductase~PRIAM: Dihydrodipicolinate reductase~SPTR: Dihydrodipicolinate reductase%3B~TIGRFAM: Dihydrodipicolinate reductase%2C bacterial/plant~IMG reference gene:2504920596~PFAM: Dihydrodipicolinate reductase%2C N-terminus%3B Dihydrodipicolinate reductase%2C C-terminus~TIGRFAM: dihydrodipicolinate reductase gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1689 Trebr_1690 Trebr_1690 Trebr_1690 1993554 1994900 - aspartate kinase COGs: COG0527 Aspartokinase~InterPro IPR001048:IPR001341~KEGG: ath:AT3G02020 AK3 (ASPARTATE KINASE 3)%3B aspartate kinase~PFAM: Aspartate/glutamate/uridylate kinase~PRIAM: Aspartate kinase~SPTR: Aspartokinase%3B~TIGRFAM: Aspartate kinase region~IMG reference gene:2504920597~PFAM: Amino acid kinase family~TIGRFAM: aspartate kinase gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1690 Trebr_1691 Trebr_1691 Trebr_1691 1994991 1996472 - protease Do COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001254:IPR001478:IPR011782~KEGG: tde:TDE2300 trypsin domain/PDZ domain-containing protein~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~SMART: PDZ/DHR/GLGF~SPTR: Trypsin domain/PDZ domain protein%3B~TIGRFAM: Peptidase S1C%2C Do~IMG reference gene:2504920598~PFAM: Trypsin%3B PDZ domain (Also known as DHR or GLGF)~TIGRFAM: periplasmic serine protease%2C Do/DeqQ family gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1691 Trebr_1692 Trebr_1692 Trebr_1692 1996610 1997359 - methionine aminopeptidase%2C type I COGs: COG0024 Methionine aminopeptidase~InterPro IPR000994:IPR002467~KEGG: tde:TDE1733 methionine aminopeptidase%2C type I~PFAM: Peptidase M24%2C structural domain~PRIAM: Methionyl aminopeptidase~SPTR: Methionine aminopeptidase%3B~TIGRFAM: Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1~IMG reference gene:2504920599~PFAM: Metallopeptidase family M24~TIGRFAM: methionine aminopeptidase%2C type I gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1692 Trebr_1693 Trebr_1693 Trebr_1693 1997361 1998185 - heat shock protein DnaJ domain protein COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterPro IPR001623~KEGG: tde:TDE1732 hypothetical protein~PFAM: Heat shock protein DnaJ%2C N-terminal~SMART: Heat shock protein DnaJ%2C N-terminal~SPTR: DnaJ domain protein%3B~IMG reference gene:2504920600~PFAM: DnaJ domain gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1693 Trebr_1694 Trebr_1694 Trebr_1694 1998209 1998619 - hypothetical protein KEGG: ssm:Spirs_2441 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920601 gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1694 Trebr_1695 Trebr_1695 Trebr_1695 1998634 1999134 - UspA domain-containing protein InterPro IPR006016~KEGG: ssm:Spirs_3105 UspA domain protein~PFAM: UspA~SPTR: UspA domain protein%3B~IMG reference gene:2504920602~PFAM: Universal stress protein family gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1695 Trebr_1696 Trebr_1696 Trebr_1696 1999145 1999768 - V-type ATP synthase subunit D COGs: COG1394 H+-ATPase subunit D~HAMAP: V-type ATP synthase subunit D~InterPro IPR002699~KEGG: tpp:TPASS_0527 V-type ATPase%2C subunit D~PFAM: ATPase%2C V1/A1 complex%2C subunit D~SPTR: V-type ATP synthase subunit D 2%3B~TIGRFAM: ATPase%2C V1/A1 complex%2C subunit D~IMG reference gene:2504920603~PFAM: ATP synthase subunit D~TIGRFAM: H(+)-transporting ATP synthase%2C vacuolar type%2C subunit D gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1696 Trebr_1697 Trebr_1697 Trebr_1697 1999780 2001177 - V-type ATP synthase beta chain COGs: COG1156 H+-ATPase subunit B~HAMAP: V-type ATP synthase beta chain~InterPro IPR004100:IPR000194:IPR000793~KEGG: tpp:TPASS_0528 V-type ATP synthase subunit B~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal~SPTR: V-type ATP synthase beta chain 2%3B~IMG reference gene:2504920604~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain%3B ATP synthase alpha/beta chain%2C C terminal domain gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1697 Trebr_1698 Trebr_1698 Trebr_1698 2001174 2002940 - V-type ATP synthase alpha chain COGs: COG1155 H+-ATPase subunit A~HAMAP: V-type ATP synthase alpha chain~InterPro IPR004100:IPR000194:IPR000793~KEGG: tpp:TPASS_0529 V-type ATP synthase subunit A~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal~SPTR: V-type ATP synthase alpha chain 2%3B~IMG reference gene:2504920605~PFAM: ATP synthase alpha/beta family%2C beta-barrel domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain%3B ATP synthase alpha/beta chain%2C C terminal domain gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1698 Trebr_1699 Trebr_1699 Trebr_1699 2002937 2003578 - H+transporting two-sector ATPase E subunit InterPro IPR002842~KEGG: tpp:TPASS_0530 possible V-type ATPase%2C subunit E~PFAM: ATPase%2C V1/A1 complex%2C subunit E~SPTR: V-type ATPase%2C subunit E%2C putative%3B~IMG reference gene:2504920606~PFAM: ATP synthase (E/31 kDa) subunit gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1699 Trebr_1700 Trebr_1700 Trebr_1700 2003597 2003935 - Vacuolar H+transporting two-sector ATPase F subunit InterPro IPR008218~KEGG: tpp:TPASS_0531 possible V-type ATPase%2C subunit F~PFAM: ATPase%2C V1/A1 complex%2C subunit F~SPTR: V-type ATPase%2C subunit F%2C putative%3B~IMG reference gene:2504920607~PFAM: ATP synthase (F/14-kDa) subunit gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1700 Trebr_1701 Trebr_1701 Trebr_1701 2003959 2004276 - H+transporting two-sector ATPase C subunit InterPro IPR002379~KEGG: csh:Closa_4195 H+transporting two-sector ATPase C subunit~PFAM: ATPase%2C F0/V0 complex%2C subunit C~SPTR: H-ATPase homolog%3B~IMG reference gene:2504920608~PFAM: ATP synthase subunit C gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1701 Trebr_1702 Trebr_1702 Trebr_1702 2004314 2006290 - V-type ATPase 116 kDa subunit COGs: COG1269 H+-ATPase subunit I~InterPro IPR002490~KEGG: tpp:TPASS_0533 V-type ATPase%2C subunit I~PFAM: ATPase%2C V0/A0 complex%2C 116kDa subunit~SPTR: V-type ATPase%2C subunit I%3B~IMG reference gene:2504920609~PFAM: V-type ATPase 116kDa subunit family gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1702 Trebr_1703 Trebr_1703 Trebr_1703 2006306 2007307 - hypothetical protein KEGG: tpp:TPASS_0534 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920610 gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1703 Trebr_1704 Trebr_1704 Trebr_1704 2007375 2007680 - hypothetical protein IMG reference gene:2504920611~PFAM: Vacuolar (H+)-ATPase G subunit gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1704 Trebr_1705 Trebr_1705 Trebr_1705 2007723 2008196 - putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~InterPro IPR002178~KEGG: PTS system transporter subunit IIa~PFAM: Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: Putative PTS IIA-like nitrogen-regulatory protein PtsN%3B~IMG reference gene:2504920612~PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1705 Trebr_1706 Trebr_1706 Trebr_1706 2008217 2008573 - preprotein translocase%2C SecG subunit COGs: COG1314 Preprotein translocase subunit SecG~InterPro IPR004692~KEGG: tde:TDE1238 preprotein translocase subunit SecG~PFAM: Preprotein translocase SecG subunit~SPTR: Preprotein translocase%2C SecG subunit%3B~TIGRFAM: Preprotein translocase SecG subunit~IMG reference gene:2504920613~PFAM: Preprotein translocase SecG subunit~TIGRFAM: protein translocase%2C SecG subunit gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1706 Trebr_1707 Trebr_1707 Trebr_1707 2008715 2009464 - triosephosphate isomerase COGs: COG0149 Triosephosphate isomerase~InterPro IPR000652~KEGG: tde:TDE1236 triosephosphate isomerase~PFAM: Triosephosphate isomerase~PRIAM: Triose-phosphate isomerase~SPTR: Triosephosphate isomerase%3B~TIGRFAM: Triosephosphate isomerase~IMG reference gene:2504920614~PFAM: Triosephosphate isomerase~TIGRFAM: triosephosphate isomerase gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1707 Trebr_1708 Trebr_1708 Trebr_1708 2009639 2010751 + domain of unknown function DUF1745 COGs: COG3287 conserved hypothetical protein~InterPro IPR013702:IPR019494~KEGG: cbe:Cbei_2770 hypothetical protein~PFAM: FIST domain%2C N-terminal%3B FIST C domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920615~PFAM: FIST C domain%3B FIST N domain gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1708 Trebr_1709 Trebr_1709 Trebr_1709 2010767 2013358 + diguanylate cyclase/phosphodiesterase COGs: COG2200 FOG: EAL domain~InterPro IPR001450:IPR007202:IPR000160:IPR001633~KEGG: ckr:CKR_1969 hypothetical protein~PFAM: Diguanylate phosphodiesterase%2C predicted%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup%3B Putative Fe-S cluster%3B Diguanylate cyclase%2C predicted~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504920616~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B EAL domain%3B Putative Fe-S cluster%3B GGDEF domain gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1709 Trebr_1710 Trebr_1710 Trebr_1710 2013423 2014172 - pseudouridine synthase Rsu COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase~InterPro IPR002942:IPR006145:IPR000748~KEGG: lin:lin2436 hypothetical protein~PFAM: RNA-binding S4%3B Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SMART: RNA-binding S4~SPTR: Pseudouridine synthase%3B~TIGRFAM: Pseudouridine synthase%2C RsuA and RluB/E/F~IMG reference gene:2504920617~PFAM: RNA pseudouridylate synthase%3B S4 domain~TIGRFAM: pseudouridine synthase gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1710 Trebr_1711 Trebr_1711 Trebr_1711 2014246 2015049 + transcriptional regulator%2C IclR family COGs: COG1414 Transcriptional regulator~InterPro IPR005471:IPR014757~KEGG: eca:ECA2425 pectin degradation repressor~PFAM: Transcriptional regulator IclR%2C C-terminal%3B Transcriptional regulator IclR%2C N-terminal~SMART: Transcriptional regulator IclR%2C N-terminal~SPTR: Pectin degradation repressor%3B~IMG reference gene:2504920618~PFAM: IclR helix-turn-helix domain%3B Bacterial transcriptional regulator gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1711 Trebr_1712 Trebr_1712 Trebr_1712 2015094 2016452 - Citrate synthase COGs: COG0372 Citrate synthase~InterPro IPR002020~KEGG: mta:Moth_1122 citrate synthase~PFAM: Citrate synthase-like~SPTR: Citrate (Si)-synthase%3B~IMG reference gene:2504920619~PFAM: Citrate synthase gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1712 Trebr_1713 Trebr_1713 Trebr_1713 2016536 2017252 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: tpp:TPASS_0231 hypothetical protein~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504920620~PFAM: RNA pseudouridylate synthase gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1713 Trebr_1714 Trebr_1714 Trebr_1714 2017289 2018461 + hypothetical protein KEGG: tde:TDE1451 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920621 gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1714 Trebr_1715 Trebr_1715 Trebr_1715 2018562 2018915 - RNP-1 like RNA-binding protein COGs: COG0724 RNA-binding protein (RRM domain)~InterPro IPR000504~KEGG: cci:CC1G_07391 glycine-rich RNA binding protein~PFAM: RNA recognition motif%2C RNP-1~SMART: RNA recognition motif%2C RNP-1~SPTR: Glycine-rich RNA binding protein%3B~IMG reference gene:2504920622~PFAM: RNA recognition motif. (a.k.a. RRM%2C RBD%2C or RNP domain) gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1715 Trebr_1716 Trebr_1716 Trebr_1716 2019159 2020118 + Hsp33 protein COGs: COG1281 Disulfide bond chaperones of the HSP33 family~InterPro IPR000397~KEGG: tde:TDE2554 heat shock protein 34~PFAM: Heat shock protein Hsp33 protein~SPTR: Chaperonin%2C 33 kDa family%3B~IMG reference gene:2504920623~PFAM: Hsp33 protein gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1716 Trebr_1717 Trebr_1717 Trebr_1717 2020189 2020890 - hypothetical protein KEGG: tde:TDE2077 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920624 gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1717 Trebr_1718 Trebr_1718 Trebr_1718 2020907 2021584 - hypothetical protein InterPro IPR019734~KEGG: tde:TDE2078 TPR domain-containing protein~SPTR: TPR domain protein%3B~IMG reference gene:2504920625~PFAM: Tetratricopeptide repeat gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1718 Trebr_1719 Trebr_1719 Trebr_1719 2021631 2023169 - Sigma 54 interacting domain protein COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains~InterPro IPR003018:IPR002078:IPR003593~KEGG: tde:TDE2079 sigma-54 dependent transcriptional regulator%2C putative~PFAM: RNA polymerase sigma factor 54%2C interaction%3B GAF~SMART: GAF%3B ATPase%2C AAA+ type%2C core~SPTR: Sigma-54 dependent transcriptional regulator%2C putative%3B~IMG reference gene:2504920626~PFAM: GAF domain%3B Sigma-54 interaction domain gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1719 Trebr_1720 Trebr_1720 Trebr_1720 2023191 2024909 - ribosomal protein S1 COGs: COG0539 Ribosomal protein S1~InterPro IPR003029:IPR018032~KEGG: tde:TDE2080 cytidylate kinase/ribosomal protein S1~PFAM: Ribosomal protein S1%2C RNA binding domain~SPTR: Cytidylate kinase/ribosomal protein S1%3B~TIGRFAM: Ribosomal S1 synthesis/modification protein~IMG reference gene:2504920627~PFAM: S1 RNA binding domain~TIGRFAM: ribosomal protein S1 gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1720 Trebr_1721 Trebr_1721 Trebr_1721 2024919 2025551 - Cytidylate kinase COGs: COG0283 Cytidylate kinase~HAMAP: Cytidylate kinase~InterPro IPR011994:IPR003136~KEGG: tde:TDE2080 cytidylate kinase/ribosomal protein S1~PFAM: Cytidylate kinase region~SPTR: Cytidylate kinase/ribosomal protein S1%3B~TIGRFAM: Cytidylate kinase~IMG reference gene:2504920628~PFAM: Cytidylate kinase~TIGRFAM: cytidylate kinase gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1721 Trebr_1722 Trebr_1722 Trebr_1722 2025561 2026334 - pseudouridine synthase Rsu COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase~InterPro IPR002942:IPR006145:IPR000748~KEGG: tde:TDE0875 ribosomal large subunit pseudouridine synthase B~PFAM: RNA-binding S4%3B Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SMART: RNA-binding S4~SPTR: Ribosomal large subunit pseudouridine synthase B%3B~TIGRFAM: Pseudouridine synthase%2C RsuA and RluB/E/F~IMG reference gene:2504920629~PFAM: RNA pseudouridylate synthase%3B S4 domain~TIGRFAM: pseudouridine synthase gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1722 Trebr_1723 Trebr_1723 Trebr_1723 2026297 2026947 - chromosome segregation and condensation protein%2C ScpB COGs: COG1386 transcriptional regulator protein containing the HTH domain~InterPro IPR005234~KEGG: tde:TDE0874 transcriptional regulator%2C putative~PFAM: Chromosome segregation/condensation protein ScpB%2C prokaryote~SPTR: Segregation and condensation protein B%3B~TIGRFAM: Chromosome segregation/condensation protein ScpB%2C prokaryote~IMG reference gene:2504920630~PFAM: Putative transcriptional regulators (Ypuh-like)~TIGRFAM: segregation and condensation protein B gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1723 Trebr_1724 Trebr_1724 Trebr_1724 2026926 2027699 - Segregation and condensation protein A COGs: COG1354 conserved hypothetical protein~HAMAP: Segregation and condensation protein A~InterPro IPR003768~KEGG: tde:TDE0873 hypothetical protein~PFAM: Prokaryotic chromosome segregation/condensation protein ScpA~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920631~PFAM: ScpA/B protein gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1724 Trebr_1725 Trebr_1725 Trebr_1725 2027772 2028449 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase~InterPro IPR000550~KEGG: sta:STHERM_c11010 hypothetical protein~PFAM: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK~SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase%3B~TIGRFAM: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK~IMG reference gene:2504920632~PFAM: 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)~TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1725 Trebr_1726 Trebr_1726 Trebr_1726 2028436 2029629 - Protein recA COGs: COG0468 RecA/RadA recombinase~HAMAP: DNA recombination and repair protein RecA~InterPro IPR013765:IPR003593~KEGG: tde:TDE0872 recombinase A~PFAM: DNA recombination and repair protein RecA~SMART: ATPase%2C AAA+ type%2C core~SPTR: Protein recA%3B~TIGRFAM: DNA recombination and repair protein RecA~IMG reference gene:2504920633~PFAM: recA bacterial DNA recombination protein~TIGRFAM: protein RecA gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1726 Trebr_1727 Trebr_1727 Trebr_1727 2029795 2030895 - hypothetical protein KEGG: tde:TDE2594 hypothetical protein~SPTR: Tetratricopeptide repeat domain protein%3B~IMG reference gene:2504920634 gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1727 Trebr_1728 Trebr_1728 Trebr_1728 2030896 2031984 - hypothetical protein KEGG: tde:TDE2595 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920635 gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1728 Trebr_1729 Trebr_1729 Trebr_1729 2031987 2033105 - Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR013105~KEGG: ssm:Spirs_2047 hypothetical protein~PFAM: Tetratricopeptide TPR2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920636 gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1729 Trebr_1730 Trebr_1730 Trebr_1730 2033107 2033739 - ribulose-phosphate 3-epimerase COGs: COG0036 Pentose-5-phosphate-3-epimerase~InterPro IPR000056~KEGG: tpp:TPASS_0945 ribulose-phosphate 3-epimerase~PFAM: Ribulose-phosphate 3-epimerase~PRIAM: Ribulose-phosphate 3-epimerase~SPTR: Ribulose-phosphate 3-epimerase%3B~TIGRFAM: Ribulose-phosphate 3-epimerase~IMG reference gene:2504920637~PFAM: Ribulose-phosphate 3 epimerase family~TIGRFAM: ribulose-phosphate 3-epimerase gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1730 Trebr_1731 Trebr_1731 Trebr_1731 2033979 2034911 + TPR domain-containing protein KEGG: tde:TDE2696 TPR domain-containing protein~SPTR: TPR domain protein%3B~IMG reference gene:2504920638 gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1731 Trebr_1732 Trebr_1732 Trebr_1732 2035038 2037737 + transcription elongation factor GreA COGs: COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA~InterPro IPR001437:IPR006359~KEGG: tde:TDE2695 transcript cleavage factor/unknown domain fusion protein~PFAM: Transcription elongation factor%2C GreA/GreB region%2C prokaryotic~SPTR: Transcription elongation factor%3B~TIGRFAM: Prokaryotic transcription elongation factor GreA~IMG reference gene:2504920639~PFAM: domain%3B Transcription elongation factor%2C GreA/GreB%2C C-term~TIGRFAM: transcription elongation factor GreA gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1732 Trebr_1733 Trebr_1733 Trebr_1733 2037898 2039265 - flagellar motor switch protein FliG COGs: COG1536 Flagellar motor switch protein~InterPro IPR000090~KEGG: tde:TDE1285 flagellar motor switch protein FliG%2C putative~PFAM: Flagellar motor switch protein FliG~SPTR: Flagellar motor switch protein%3B~IMG reference gene:2504920640~PFAM: FliG C-terminal domain~TIGRFAM: flagellar motor switch protein FliG gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1733 Trebr_1734 Trebr_1734 Trebr_1734 2039378 2041966 + penicillin-binding protein%2C 1A family COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein~InterPro IPR001264:IPR001460:IPR011816~KEGG: tpp:TPASS_0705 penicillin-binding protein~PFAM: Glycosyl transferase%2C family 51%3B Penicillin-binding protein%2C transpeptidase~PRIAM: Peptidoglycan glycosyltransferase~SPTR: Penicillin-binding protein%3B~TIGRFAM: Penicillin-binding protein 1A~IMG reference gene:2504920641~PFAM: Penicillin binding protein transpeptidase domain%3B Transglycosylase~TIGRFAM: penicillin-binding protein%2C 1A family gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1734 Trebr_1735 Trebr_1735 Trebr_1735 2042004 2042411 + ParB domain protein nuclease InterPro IPR003115~KEGG: ssm:Spirs_1726 ParB domain protein nuclease~PFAM: ParB-like nuclease~SMART: ParB-like nuclease~SPTR: ParB domain protein nuclease%3B~IMG reference gene:2504920642~PFAM: ParB-like nuclease domain~TIGRFAM: ParB-like partition proteins gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1735 Trebr_1736 Trebr_1736 Trebr_1736 2048331 2048525 - hypothetical protein IMG reference gene:2504920647 gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1736 Trebr_1737 Trebr_1737 Trebr_1737 2048634 2049017 - hypothetical protein KEGG: sta:STHERM_c08800 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920648 gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1737 Trebr_1738 Trebr_1738 Trebr_1738 2049094 2053677 - protein serine/threonine phosphatase with extracellular sensor COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR003660:IPR010822:IPR001932~KEGG: tpp:TPASS_0854 hypothetical protein~PFAM: Sporulation stage II%2C protein E C-terminal%3B HAMP linker domain~SMART: Protein phosphatase 2C-related%3B HAMP linker domain~SPTR: Hamp domain-containing protein%3B~IMG reference gene:2504920649~PFAM: HAMP domain%3B Stage II sporulation protein E (SpoIIE) gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1738 Trebr_1739 Trebr_1739 Trebr_1739 2053677 2056670 - hypothetical protein KEGG: tde:TDE2116 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920650 gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1739 Trebr_1740 Trebr_1740 Trebr_1740 2056819 2058099 + protein of unknown function UPF0164 InterPro IPR005362:IPR013105~KEGG: tde:TDE2117 hypothetical protein~PFAM: Uncharacterised protein family UPF0164%3B Tetratricopeptide TPR2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920651~PFAM: Uncharacterised protein family (UPF0164)%3B Tetratricopeptide repeat gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1740 Trebr_1741 Trebr_1741 Trebr_1741 2058096 2059229 - hypothetical protein IMG reference gene:2504920652 gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1741 Trebr_1742 Trebr_1742 Trebr_1742 2059234 2060166 - hypothetical protein IMG reference gene:2504920653 gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1742 Trebr_1743 Trebr_1743 Trebr_1743 2060138 2061685 - MiaB-like tRNA modifying enzyme COGs: COG0621 2-methylthioadenine synthetase~InterProIPR013848:IPR007197:IPR006638:IPR005839:IPR 006467~KEGG: tpp:TPASS_0269 hypothetical protein~PFAM: Radical SAM%3B Methylthiotransferase%2C N-terminal~SMART: Elongator protein 3/MiaB/NifB~SPTR: Putative uncharacterized protein%3B~TIGRFAM: MiaB-like tRNA modifying enzyme%3B Methylthiotransferase~IMG reference gene:2504920654~PFAM: Radical SAM superfamily%3B Uncharacterized protein family UPF0004~TIGRFAM: MiaB-like tRNA modifying enzyme%3B radical SAM methylthiotransferase%2C MiaB/RimO family gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1743 Trebr_1744 Trebr_1744 Trebr_1744 2061645 2062283 - Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR001440:IPR019734~KEGG: tde:TDE1887 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504920655~PFAM: Tetratricopeptide repeat gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1744 Trebr_1745 Trebr_1745 Trebr_1745 2062285 2062644 - protein of unknown function DUF583 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination~InterPro IPR007607~KEGG: tde:TDE1888 hypothetical protein~PFAM: Protein of unknown function DUF583~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920656~PFAM: Protein of unknown function%2C DUF583 gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1745 Trebr_1746 Trebr_1746 Trebr_1746 2062865 2063869 + phosphate acetyltransferase COGs: COG0280 Phosphotransacetylase~InterPro IPR002505:IPR004614~KEGG: tde:TDE0042 phosphate acetyltransferase~PFAM: Phosphate acetyl/butaryl transferase~PRIAM: Phosphate acetyltransferase~SPTR: Phosphate acetyltransferase%3B~TIGRFAM: Phosphate acetyltransferase~IMG reference gene:2504920657~PFAM: Phosphate acetyl/butaryl transferase~TIGRFAM: phosphate acetyltransferase gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1746 Trebr_1747 Trebr_1747 Trebr_1747 2064015 2064923 + ABC-type metal ion transporter%2C periplasmic subunit COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin~InterPro IPR006127~KEGG: cce:Ccel_1156 periplasmic solute binding protein~PFAM: ABC transporter metal-binding lipoprotein~SPTR: ABC transporter%2C substrate-binding protein%3B~IMG reference gene:2504920658~PFAM: Periplasmic solute binding protein family gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1747 Trebr_1748 Trebr_1748 Trebr_1748 2065021 2065191 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein InterPro IPR001450~KEGG: tde:TDE1736 ferredoxin%2C 2(4Fe-4S)~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: 4Fe-4S binding domain protein%3B~IMG reference gene:2504920659~PFAM: 4Fe-4S binding domain gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1748 Trebr_1749 Trebr_1749 Trebr_1749 2065283 2065714 + hypothetical protein KEGG: tde:TDE1737 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920660 gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1749 Trebr_1750 Trebr_1750 Trebr_1750 2065668 2066603 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR018392:IPR016047~KEGG: ssm:Spirs_1730 peptidase M23~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SPTR: Peptidase M23%3B~IMG reference gene:2504920661~PFAM: Peptidase family M23 gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1750 Trebr_1751 Trebr_1751 Trebr_1751 2066617 2067612 + hypothetical protein KEGG: sta:STHERM_c07170 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920662 gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1751 Trebr_1752 Trebr_1752 Trebr_1752 2067750 2068565 - molybdopterin dehydrogenase FAD-binding protein COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs~InterPro IPR002346~KEGG: tde:TDE0728 FAD-binding protein%2C putative~PFAM: Molybdopterin dehydrogenase%2C FAD-binding~SPTR: Putative FAD-binding protein%3B~IMG reference gene:2504920663~PFAM: FAD binding domain in molybdopterin dehydrogenase gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1752 Trebr_1753 Trebr_1753 Trebr_1753 2068552 2069043 - ferredoxin COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs~InterPro IPR001041~KEGG: tde:TDE0727 iron-sulfur cluster-binding protein~PFAM: Ferredoxin~SPTR: Iron-sulfur cluster-binding protein%3B~IMG reference gene:2504920664~PFAM: 2Fe-2S iron-sulfur cluster binding domain%3B [2Fe-2S] binding domain gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1753 Trebr_1754 Trebr_1754 Trebr_1754 2069040 2071301 - Xanthine dehydrogenase COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs~InterPro IPR000674:IPR008274~KEGG: tde:TDE0726 aldehyde oxidase and xanthine dehydrogenase family protein~PFAM: Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding%3B Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead~PRIAM: Xanthine dehydrogenase~SPTR: Aldehyde oxidase and xanthine dehydrogenase family protein%3B~IMG reference gene:2504920665~PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase%3B Aldehyde oxidase and xanthine dehydrogenase%2C a/b hammerhead domain gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1754 Trebr_1755 Trebr_1755 Trebr_1755 2071291 2072502 - DegT/DnrJ/EryC1/StrS aminotransferase COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis~InterPro IPR000653~KEGG: tde:TDE0725 exopolysaccharide biosynthesis protein~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~SPTR: Spore coat polysaccharide biosynthesis protein SpsC%3B~IMG reference gene:2504920666~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1755 Trebr_1756 Trebr_1756 Trebr_1756 2072486 2073970 - polysaccharide biosynthesis protein CapD COGs: COG1086 nucleoside-diphosphate sugar epimerase~InterPro IPR003869~KEGG: tde:TDE0714 capsular polysaccharide biosynthesis protein~PFAM: Polysaccharide biosynthesis protein CapD-like~SPTR: Capsular polysaccharide biosynthesis protein%3B~IMG reference gene:2504920667~PFAM: Polysaccharide biosynthesis protein gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1756 Trebr_1757 Trebr_1757 Trebr_1757 2073954 2074610 - NGN domain-containing protein InterPro IPR006645:IPR005824~KEGG: tde:TDE0713 NusG family transcription antitermination protein~PFAM: Transcription antitermination protein%2C NusG%2C N-terminal~SMART: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW~SPTR: Transcription antitermination protein%2C NusG family%3B~IMG reference gene:2504920668~PFAM: Transcription termination factor nusG gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1757 Trebr_1758 Trebr_1758 Trebr_1758 2074663 2075181 + hypothetical protein IMG reference gene:2504920669 gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1758 Trebr_1759 Trebr_1759 Trebr_1759 2075210 2076406 + Sporulation domain-containing protein InterPro IPR007730~KEGG: tde:TDE1185 putative lipoprotein~PFAM: Sporulation/cell division region%2C bacteria~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504920670 gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1759 Trebr_1760 Trebr_1760 Trebr_1760 2076492 2077772 - glucose-1-phosphate adenylyltransferase COGs: COG0448 ADP-glucose pyrophosphorylase~InterPro IPR005835:IPR011831~KEGG: tde:TDE2035 glucose-1-phosphate adenylyltransferase~PFAM: Nucleotidyl transferase~PRIAM: Glucose-1-phosphate adenylyltransferase~SPTR: Glucose-1-phosphate adenylyltransferase%3B~TIGRFAM: Glucose-1-phosphate adenylyltransferase~IMG reference gene:2504920671~PFAM: Nucleotidyl transferase~TIGRFAM: glucose-1-phosphate adenylyltransferase gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1760 Trebr_1761 Trebr_1761 Trebr_1761 2077972 2078856 + protein of unknown function DUF6 transmembrane COGs: COG2510 membrane protein~InterPro IPR000620~KEGG: protein of unknown function DUF6 transmembrane~PFAM: Protein of unknown function DUF6%2C transmembrane~SPTR: Drug/metabolite transporter%3B~IMG reference gene:2504920672~PFAM: EamA-like transporter family gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1761 Trebr_1762 Trebr_1762 Trebr_1762 2078955 2080325 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: elm:ELI_0476 hypothetical protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~manually curated~IMG reference gene:2504920673~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1762 Trebr_1763 Trebr_1763 Trebr_1763 2080488 2082023 + PpiC-type peptidyl-prolyl cis-trans isomerase KEGG: ssm:Spirs_1830 PpiC-type peptidyl-prolyl cis-trans isomerase~SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase%3B~IMG reference gene:2504920674~PFAM: PPIC-type PPIASE domain gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1763 Trebr_1764 Trebr_1764 Trebr_1764 2082030 2083769 + protein of unknown function DUF115 InterPro IPR002826~KEGG: tde:TDE2525 hypothetical protein~PFAM: Protein of unknown function DUF115~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920675~PFAM: Protein of unknown function DUF115 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1764 Trebr_1765 Trebr_1765 Trebr_1765 2083862 2085667 - GTP-binding protein lepA COGs: COG0481 Membrane GTPase LepA~HAMAP: GTP-binding protein lepA~InterProIPR000795:IPR004161:IPR000640:IPR013842:IPR 005225:IPR006297~KEGG: tde:TDE1893 GTP-binding protein LepA~PFAM: GTP-binding protein LepA%2C C-terminal%3B Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C C-terminal~SPTR: Elongation factor 4%3B~TIGRFAM: GTP-binding protein LepA%3B Small GTP-binding protein~IMG reference gene:2504920676~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B GTP-binding protein LepA C-terminus~TIGRFAM: GTP-binding protein LepA%3B small GTP-binding protein domain gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1765 Trebr_1766 Trebr_1766 Trebr_1766 2085842 2087530 - peptidase S1 and S6 chymotrypsin/Hap COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain~InterPro IPR001254:IPR001478~KEGG: tpp:TPASS_0546 possible periplasmic serine protease~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~SMART: PDZ/DHR/GLGF~SPTR: Trypsin domain/PDZ domain protein%3B~IMG reference gene:2504920677~PFAM: Trypsin%3B PDZ domain (Also known as DHR or GLGF) gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1766 Trebr_1767 Trebr_1767 Trebr_1767 2087523 2089634 - hypothetical protein KEGG: tpp:TPASS_0374 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920678 gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1767 Trebr_1768 Trebr_1768 Trebr_1768 2089661 2091511 - ATP-dependent metalloprotease FtsH COGs: COG0465 ATP-dependent Zn protease~InterProIPR011546:IPR003959:IPR000642:IPR003593:IPR 005936~KEGG: ssm:Spirs_1817 ATP-dependent metalloprotease FtsH~PFAM: Peptidase M41%3B ATPase%2C AAA-type%2C core%3B Peptidase M41%2C FtsH extracellular~PRIAM: Microtubule-severing ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ATP-dependent metalloprotease FtsH%3B~TIGRFAM: Peptidase M41%2C FtsH~IMG reference gene:2504920679~PFAM: FtsH Extracellular%3B Peptidase family M41%3B ATPase family associated with various cellular activities (AAA)~TIGRFAM: ATP-dependent metalloprotease FtsH gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1768 Trebr_1769 Trebr_1769 Trebr_1769 2091579 2093048 - tRNA(Ile)-lysidine synthase COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control~HAMAP: tRNA(Ile)-lysidine synthase~InterPro IPR011063:IPR012795:IPR012796~KEGG: tde:TDE1341 hypothetical protein~PFAM: PP-loop~SPTR: tRNA(Ile)-lysidine synthase%3B~TIGRFAM: Lysidine-tRNA(Ile) synthetase%2C N-terminal%3B Lysidine-tRNA(Ile) synthetase%2C C-terminal~IMG reference gene:2504920680~PFAM: PP-loop family~TIGRFAM: tRNA(Ile)-lysidine synthetase%2C N-terminal domain gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1769 Trebr_1770 Trebr_1770 Trebr_1770 2093122 2093679 - 50S ribosomal protein L25 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc)~HAMAP: Ribosomal protein L25~InterPro IPR020055:IPR001021~KEGG: tde:TDE1340 50S ribosomal protein L25/general stress protein Ctc~PFAM: Ribosomal protein L25%2C N-terminal~SPTR: 50S ribosomal protein L25%3B~TIGRFAM: Ribosomal protein L25~IMG reference gene:2504920681~PFAM: Ribosomal L25p family~TIGRFAM: ribosomal protein L25%2C Ctc-form gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1770 Trebr_1771 Trebr_1771 Trebr_1771 2093829 2094119 - septation protein spoVG COGs: COG2088 Uncharacterized protein involved in the regulation of septum location~HAMAP: septation protein spoVG~InterPro IPR007170~KEGG: ssm:Spirs_1813 SpoVG family protein~PFAM: Sporulation stage V%2C protein G~SPTR: SpoVG family protein%3B~IMG reference gene:2504920683~PFAM: SpoVG gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1771 Trebr_1772 Trebr_1772 Trebr_1772 2094170 2095156 - 4-diphosphocytidyl-2-C-methyl-D-erythritolkinase COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase~HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~InterPro IPR006204:IPR004424~KEGG: tde:TDE1338 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~PFAM: GHMP kinase~PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase~SPTR: 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase%3B~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~IMG reference gene:2504920684~PFAM: GHMP kinases N terminal domain~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1772 Trebr_1773 Trebr_1773 Trebr_1773 2095215 2095469 + hypothetical protein KEGG: tde:TDE2071 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920685 gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1773 Trebr_1774 Trebr_1774 Trebr_1774 2095552 2095896 - iojap-like protein COGs: COG0799 Iojap protein~InterPro IPR004394~KEGG: tde:TDE1745 hypothetical protein~PFAM: Iojap-related protein~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Iojap-related protein~IMG reference gene:2504920686~PFAM: Domain of unknown function DUF143~TIGRFAM: iojap-like ribosome-associated protein gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1774 Trebr_1775 Trebr_1775 Trebr_1775 2095928 2097127 - hypothetical protein COGs: COG1316 Transcriptional regulator~KEGG: tpp:TPASS_0739 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920687~PFAM: Cell envelope-related transcriptional attenuator domain gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1775 Trebr_1776 Trebr_1776 Trebr_1776 2097127 2097693 - metal dependent phosphohydrolase COGs: COG1713 HD superfamily hydrolase involved in NAD metabolism~InterPro IPR006674:IPR003607:IPR005249~KEGG: tde:TDE1747 putative nicotinate-nucleotide adenylyltransferase~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SMART: Metal-dependent phosphohydrolase%2C HD region~SPTR: Nicotinate (Nicotinamide) nucleotide adenylyltransferase%3B~TIGRFAM: Conserved hypothetical protein CHP00488~IMG reference gene:2504920688~PFAM: HD domain~TIGRFAM: putative HD superfamily hydrolase of NAD metabolism gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1776 Trebr_1777 Trebr_1777 Trebr_1777 2097674 2098321 - nicotinate-nucleotide adenylyltransferase COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase~HAMAP: nicotinate-nucleotide adenylyltransferase~InterPro IPR004820:IPR004821:IPR005248~KEGG: sta:STHERM_c10300 putative nicotinate-nucleotide adenylyltransferase~PFAM: Cytidylyltransferase~PRIAM: Nicotinate-nucleotide adenylyltransferase~SPTR: Probable nicotinate-nucleotide adenylyltransferase%3B~TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase%3B Cytidyltransferase-related~IMG reference gene:2504920689~PFAM: Cytidylyltransferase~TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase%3B cytidyltransferase-related domain gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1777 Trebr_1778 Trebr_1778 Trebr_1778 2098326 2099471 - GTPase obg COGs: COG0536 GTPase~HAMAP: GTPase obg~InterPro IPR006169:IPR002917:IPR014100~KEGG: tde:TDE1748 GTPase ObgE~PFAM: GTP1/OBG subdomain%3B GTP-binding protein%2C HSR1-related~SPTR: GTPase obg%3B~TIGRFAM: GTP-binding protein Obg/CgtA~IMG reference gene:2504920690~PFAM: GTPase of unknown function%3B GTP1/OBG~TIGRFAM: Obg family GTPase CgtA gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1778 Trebr_1779 Trebr_1779 Trebr_1779 2099553 2099810 - 50S ribosomal protein L27 COGs: COG0211 Ribosomal protein L27~HAMAP: Ribosomal protein L27~InterPro IPR001684~KEGG: tde:TDE1749 50S ribosomal protein L27~PFAM: Ribosomal protein L27~SPTR: 50S ribosomal protein L27%3B~TIGRFAM: Ribosomal protein L27~IMG reference gene:2504920691~PFAM: Ribosomal L27 protein~TIGRFAM: ribosomal protein L27 gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1779 Trebr_1780 Trebr_1780 Trebr_1780 2099826 2100161 - protein of unknown function DUF464 COGs: COG2868 ribosomal protein~InterPro IPR007422~KEGG: tpp:TPASS_0744 hypothetical protein~PFAM: Protein of unknown function DUF464~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920692~PFAM: Protein of unknown function (DUF464) gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1780 Trebr_1781 Trebr_1781 Trebr_1781 2100168 2100482 - 50S ribosomal protein L21 COGs: COG0261 Ribosomal protein L21~HAMAP: Ribosomal protein L21~InterPro IPR001787~KEGG: tde:TDE1751 50S ribosomal protein L21~PFAM: Ribosomal protein L21~SPTR: 50S ribosomal protein L21%3B~TIGRFAM: Ribosomal protein L21~IMG reference gene:2504920693~PFAM: Ribosomal prokaryotic L21 protein~TIGRFAM: ribosomal protein L21 gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1781 Trebr_1782 Trebr_1782 Trebr_1782 2100912 2101613 + hypothetical protein KEGG: cac:CA_C2107 cell adhesion domain-containing protein~SPTR: Contains cell adhesion domain%3B~IMG reference gene:2504920694 gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1782 Trebr_1783 Trebr_1783 Trebr_1783 2101564 2102409 - hypothetical protein IMG reference gene:2504920695 gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1783 Trebr_1784 Trebr_1784 Trebr_1784 2102596 2102853 - addiction module toxin%2C RelE/StbE family COGs: COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system~InterPro IPR007712:IPR012753~KEGG: tde:TDE0735 hypothetical protein~PFAM: Plasmid stabilisation system~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Addiction module toxin%2C RelE/StbE~manually curated~IMG reference gene:2504920696~PFAM: Plasmid stabilisation system protein~TIGRFAM: addiction module toxin%2C RelE/StbE family gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1784 Trebr_1785 Trebr_1785 Trebr_1785 2102850 2103086 - hypothetical protein KEGG: tde:TDE1979 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920697 gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1785 Trebr_1786 Trebr_1786 Trebr_1786 2103399 2104091 - hypothetical protein IMG reference gene:2504920698 gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1786 Trebr_1787 Trebr_1787 Trebr_1787 2104145 2105062 - hypothetical protein KEGG: ssm:Spirs_2159 integrase family protein~SPTR: Integrase family protein%3B~IMG reference gene:2504920699 gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1787 Trebr_1788 Trebr_1788 Trebr_1788 2105483 2107582 + coagulation factor 5/8 type domain protein COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase~InterPro IPR002818:IPR000421~KEGG: hoh:Hoch_1480 coagulation factor 5/8 type domain protein~PFAM: Coagulation factor 5/8 type%2C C-terminal%3B ThiJ/PfpI~SPTR: Coagulation factor 5/8 type domain protein%3B~IMG reference gene:2504920702~PFAM: F5/8 type C domain%3B DJ-1/PfpI family gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1788 Trebr_1789 Trebr_1789 Trebr_1789 2107676 2109466 + Xenobiotic-transporting ATPase COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR001140:IPR003439:IPR003593~KEGG: elm:ELI_4404 ABC transporter related protein~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504920703~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1789 Trebr_1790 Trebr_1790 Trebr_1790 2109466 2111385 + Xenobiotic-transporting ATPase COGs: COG1132 ABC-type multidrug transport system ATPase and permease components~InterPro IPR001140:IPR003439:IPR003593~KEGG: elm:ELI_4405 ABC-type multidrug transport system~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~PRIAM: Xenobiotic-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC-type multidrug transport system%3B~IMG reference gene:2504920704~PFAM: ABC transporter transmembrane region%3B ABC transporter gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1790 Trebr_1791 Trebr_1791 Trebr_1791 2111394 2112305 - helix-turn-helix type 11 domain-containing protein COGs: COG2378 transcriptional regulator protein~InterPro IPR013196~KEGG: cpy:Cphy_0991 helix-turn-helix type 11 domain-containing protein~SPTR: Putative transcriptional regulator%3B~IMG reference gene:2504920705~PFAM: HTH domain gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1791 Trebr_1792 Trebr_1792 Trebr_1792 2112975 2113562 + helix-turn-helix domain protein InterPro IPR001387~KEGG: dhd:Dhaf_1789 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920706~PFAM: Helix-turn-helix gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1792 Trebr_1793 Trebr_1793 Trebr_1793 2113568 2114440 - Radical SAM domain protein COGs: COG1533 DNA repair photolyase~InterPro IPR007197~KEGG: mla:Mlab_0619 hypothetical protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504920707~PFAM: Radical SAM superfamily gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1793 Trebr_1794 Trebr_1794 Trebr_1794 2114455 2116110 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE0178 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504920708~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1794 Trebr_1795 Trebr_1795 Trebr_1795 2116297 2117421 + GCN5-related N-acetyltransferase InterPro IPR000182:IPR013217~KEGG: csh:Closa_3290 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase%3B Methyltransferase type 12~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920709~PFAM: Acetyltransferase (GNAT) family gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1795 Trebr_1796 Trebr_1796 Trebr_1796 2117911 2118774 + Conserved hypothetical protein CHP01784 InterPro IPR010106~KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP01784~IMG reference gene:2504920710~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1796 Trebr_1797 Trebr_1797 Trebr_1797 2118808 2119047 - hypothetical protein IMG reference gene:2504920711 gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1797 Trebr_1798 Trebr_1798 Trebr_1798 2119320 2119553 - pseudogene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1798 Trebr_1799 Trebr_1799 Trebr_1799 2119571 2120797 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: pru:PRU_0104 group 1 family glycosyltransferase~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyltransferase%2C group 1 family%3B~IMG reference gene:2504920713~PFAM: Glycosyl transferases group 1 gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1799 Trebr_1800 Trebr_1800 Trebr_1800 2120925 2121314 - hypothetical protein KEGG: bvu:BVU_1541 hypothetical protein~SPTR: Mannose-6-phosphate isomerase%3B~IMG reference gene:2504920714~PFAM: Cupin domain gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1800 Trebr_1801 Trebr_1801 Trebr_1801 2121311 2122453 - UDP-N-acetylglucosamine 2-epimerase COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase~InterPro IPR003331~KEGG: UDP-N-acetylglucosamine 2-epimerase~PFAM: UDP-N-acetylglucosamine 2-epimerase~PRIAM: UDP-N-acetylglucosamine 2-epimerase~SPTR: UDP-N-acetylglucosamine 2-epimerase%3B~TIGRFAM: UDP-N-acetylglucosamine 2-epimerase~IMG reference gene:2504920715~PFAM: UDP-N-acetylglucosamine 2-epimerase~TIGRFAM: UDP-N-acetylglucosamine 2-epimerase gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1801 Trebr_1802 Trebr_1802 Trebr_1802 2122460 2123341 - NAD-dependent epimerase/dehydratase COGs: COG1091 dTDP-4-dehydrorhamnose reductase~InterPro IPR001509~KEGG: bfr:BF2569 putative reductase~PFAM: NAD-dependent epimerase/dehydratase~SPTR: Carbohydrate oxidoreductase%3B~manually curated~IMG reference gene:2504920716~PFAM: RmlD substrate binding domain gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1802 Trebr_1803 Trebr_1803 Trebr_1803 2123334 2123630 - pseudogene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1803 Trebr_1804 Trebr_1804 Trebr_1804 2123676 2124917 - transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: wch:wcw_0483 transposase~PFAM: Transposase%2C mutator type~SPTR: Transposase%3B~IMG reference gene:2504920718~PFAM: Transposase%2C Mutator family gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1804 Trebr_1805 Trebr_1805 Trebr_1805 2125977 2126816 - Domain of unknown function DUF1814 InterPro IPR014942~KEGG: dak:DaAHT2_0326 domain of unknown function DUF1814~PFAM: Protein of unknown function DUF1814~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920719~PFAM: Domain of unknown function (DUF1814) gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1805 Trebr_1806 Trebr_1806 Trebr_1806 2126803 2127435 - hypothetical protein KEGG: dak:DaAHT2_0325 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920720 gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1806 Trebr_1807 Trebr_1807 Trebr_1807 2127417 2128586 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: llo:LLO_0232 glycosyltransferase%2C lipopolysaccharide biosynthesis protein~PFAM: Glycosyl transferase%2C group 1~SPTR: WfbF%3B~IMG reference gene:2504920721~PFAM: Glycosyl transferases group 1 gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1807 Trebr_1808 Trebr_1808 Trebr_1808 2128674 2129726 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: ypy:YPK_3184 glycosyl transferase group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: Glycosyl transferase%3B~IMG reference gene:2504920722~PFAM: Glycosyl transferases group 1 gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1808 Trebr_1809 Trebr_1809 Trebr_1809 2130100 2131272 - hypothetical protein KEGG: llk:LLKF_0137 polysaccharide biosynthesis protein~SPTR: Predicted protein%3B~IMG reference gene:2504920723 gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1809 Trebr_1810 Trebr_1810 Trebr_1810 2131277 2132365 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: pgn:PGN_1251 probable glycosyltransferase~PFAM: Glycosyl transferase%2C group 1~SPTR: WfaQ%3B~IMG reference gene:2504920724~PFAM: Glycosyl transferases group 1 gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1810 Trebr_1811 Trebr_1811 Trebr_1811 2132372 2133472 - hypothetical protein KEGG: stl:stu1102 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920725~PFAM: Polysaccharide pyruvyl transferase gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1811 Trebr_1812 Trebr_1812 Trebr_1812 2133681 2134865 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit~InterPro IPR001450:IPR007525~KEGG: bpb:bpr_I0816 coenzyme F420-reducing hydrogenase beta subunit~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup%3B Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C C-terminal~SPTR: Coenzyme F420-reducing hydrogenase beta subunit%3B~IMG reference gene:2504920726~PFAM: Coenzyme F420 hydrogenase/dehydrogenase%2C beta subunit C terminus gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1812 Trebr_1813 Trebr_1813 Trebr_1813 2134862 2136553 - multi antimicrobial extrusion protein MatE COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid~InterPro IPR002528~KEGG: pdi:BDI_1846 putative transmembrane protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Conserved hypothetical transmembrane protein%3B putative transmembrane protein%3B~IMG reference gene:2504920727~PFAM: MatE gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1813 Trebr_1814 Trebr_1814 Trebr_1814 2136887 2137360 + arginine repressor%2C ArgR COGs: COG1438 Arginine repressor~HAMAP: Arginine repressor~InterPro IPR001669~KEGG: ssm:Spirs_3243 arginine repressor%2C ArgR~PFAM: Arginine repressor~SPTR: Arginine repressor%3B~IMG reference gene:2504920728~PFAM: Arginine repressor%2C C-terminal domain%3B Arginine repressor%2C DNA binding domain~TIGRFAM: arginine repressor gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1814 Trebr_1815 Trebr_1815 Trebr_1815 2137426 2138139 - hypothetical protein KEGG: elm:ELI_3508 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920729 gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1815 Trebr_1816 Trebr_1816 Trebr_1816 2138136 2138849 - ABC transporter permease KEGG: bpb:bpr_III149 ABC transporter permease~SPTR: ABC transporter permease protein%3B~IMG reference gene:2504920730 gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1816 Trebr_1817 Trebr_1817 Trebr_1817 2138846 2139769 - ABC transporter related protein COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: bpb:bpr_III150 ABC transporter ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504920731~PFAM: ABC transporter gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1817 Trebr_1818 Trebr_1818 Trebr_1818 2139779 2140393 - regulatory protein TetR InterPro IPR001647~KEGG: elm:ELI_3511 TetR family transcriptional regulator~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: TetR family transcriptional regulator%3B~IMG reference gene:2504920732~PFAM: Bacterial regulatory proteins%2C tetR family gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1818 Trebr_1819 Trebr_1819 Trebr_1819 2140671 2142254 + Glucose-6-phosphate isomerase COGs: COG0166 Glucose-6-phosphate isomerase~HAMAP: Phosphoglucose isomerase (PGI)~InterPro IPR001672~KEGG: eel:EUBELI_00049 glucose-6-phosphate isomerase~PFAM: Phosphoglucose isomerase (PGI)~SPTR: Glucose-6-phosphate isomerase%3B~IMG reference gene:2504920733~PFAM: Phosphoglucose isomerase gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1819 Trebr_1820 Trebr_1820 Trebr_1820 2142474 2143373 + protein of unknown function DUF368 COGs: COG2035 membrane protein~InterPro IPR007163~KEGG: tde:TDE2250 hypothetical protein~PFAM: Protein of unknown function DUF368~SPTR: Integral membrane protein%3B~IMG reference gene:2504920734~PFAM: Domain of unknown function (DUF368) gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1820 Trebr_1821 Trebr_1821 Trebr_1821 2143548 2144405 - hypothetical protein KEGG: tde:TDE2640 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920735~PFAM: Peptidase family M28 gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1821 Trebr_1822 Trebr_1822 Trebr_1822 2144455 2144895 - hypothetical protein KEGG: cbl:CLK_0205 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920736 gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1822 Trebr_1823 Trebr_1823 Trebr_1823 2145056 2146327 + nuclease SbcCD%2C D subunit COGs: COG0420 DNA repair exonuclease~InterPro IPR004843:IPR004593~KEGG: tde:TDE0170 nuclease SbcCD%2C D subunit%2C putative~PFAM: Metallophosphoesterase~SPTR: Nuclease SbcCD%2C D subunit%2C putative%3B~TIGRFAM: Exonuclease SbcD~IMG reference gene:2504920737~PFAM: Calcineurin-like phosphoesterase%3B Type 5 capsule protein repressor C terminal~TIGRFAM: exonuclease SbcD gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1823 Trebr_1824 Trebr_1824 Trebr_1824 2146324 2149416 + exonuclease COGs: COG0419 ATPase involved in DNA repair~KEGG: tpp:TPASS_0627 exonuclease~SPTR: SMC domain protein%3B~IMG reference gene:2504920738~TIGRFAM: exonuclease SbcC gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1824 Trebr_1825 Trebr_1825 Trebr_1825 2149461 2150276 - hypothetical protein KEGG: ccb:Clocel_0911 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920739 gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1825 Trebr_1826 Trebr_1826 Trebr_1826 2150508 2152013 + IMP dehydrogenase COGs: COG0516 IMP dehydrogenase/GMP reductase~InterPro IPR001093:IPR000644~KEGG: cbe:Cbei_2114 inosine 5-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B Cystathionine beta-synthase%2C core~PRIAM: IMP dehydrogenase~SMART: Cystathionine beta-synthase%2C core~SPTR: IMP dehydrogenase%3B~IMG reference gene:2504920740~PFAM: CBS domain%3B IMP dehydrogenase / GMP reductase domain~TIGRFAM: inosine-5'-monophosphate dehydrogenase gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1826 Trebr_1827 Trebr_1827 Trebr_1827 2152116 2153552 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: gau:GAU_3690 ribosomal large subunit pseudouridine synthase A~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504920741~PFAM: RNA pseudouridylate synthase gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1827 Trebr_1828 Trebr_1828 Trebr_1828 2153580 2154596 - O-sialoglycoprotein endopeptidase COGs: COG0533 Metal-dependent protease with possible chaperone activity~HAMAP: O-sialoglycoprotein endopeptidase~InterPro IPR000905:IPR017861~KEGG: tde:TDE2504 putative DNA-binding/iron metalloprotein/AP endonuclease~PFAM: Peptidase M22%2C glycoprotease~PRIAM: O-sialoglycoprotein endopeptidase~SPTR: Probable O-sialoglycoprotein endopeptidase%3B~TIGRFAM: putative glycoprotease GCP%3B Peptidase M22%2C glycoprotease%2C subgroup~IMG reference gene:2504920742~PFAM: Glycoprotease family~TIGRFAM: putative glycoprotease GCP%3B metallohydrolase%2C glycoprotease/Kae1 family gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1828 Trebr_1829 Trebr_1829 Trebr_1829 2154577 2155644 - protein of unknown function DUF610 YibQ COGs: COG2861 conserved hypothetical protein~InterPro IPR006837~KEGG: tde:TDE2503 hypothetical protein~PFAM: Protein of unknown function DUF610%2C YibQ~SPTR: Conserved domain protein%3B~IMG reference gene:2504920743~PFAM: Divergent polysaccharide deacetylase gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1829 Trebr_1830 Trebr_1830 Trebr_1830 2155884 2156054 + hypothetical protein KEGG: tde:TDE2408 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920744 gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1830 Trebr_1831 Trebr_1831 Trebr_1831 2156132 2156890 - phospholipid/glycerol acyltransferase COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase~InterPro IPR002123~KEGG: tde:TDE1989 acyltransferase family protein~PFAM: Phospholipid/glycerol acyltransferase~SMART: Phospholipid/glycerol acyltransferase~SPTR: Acyltransferase family protein%3B~IMG reference gene:2504920745~PFAM: Acyltransferase~TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1831 Trebr_1832 Trebr_1832 Trebr_1832 2156978 2159434 - helicase c2 COGs: COG1199 Rad3-related DNA helicase~InterPro IPR006555~KEGG: ssm:Spirs_1712 helicase C2~SMART: Helicase%2C ATP-dependent%2C c2 type~SPTR: Helicase c2%3B~IMG reference gene:2504920746~PFAM: Protein of unknown function (DUF2466) gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1832 Trebr_1833 Trebr_1833 Trebr_1833 2159654 2160895 - RelA/SpoT domain protein COGs: COG2357 conserved hypothetical protein~InterPro IPR007685:IPR001440:IPR019734~KEGG: tde:TDE1711 RelA/SpoT domain-containing protein~PFAM: RelA/SpoT%3B Tetratricopeptide TPR-1~SPTR: RelA/SpoT domain protein%3B~IMG reference gene:2504920748~PFAM: Region found in RelA / SpoT proteins%3B Tetratricopeptide repeat gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1833 Trebr_1834 Trebr_1834 Trebr_1834 2161064 2162113 - flagellar filament outer layer protein FlaA InterPro IPR006714~KEGG: tde:TDE1712 flagellar filament outer layer protein~PFAM: Flagellar filament outer layer protein FlaA~SPTR: Flagellar filament outer layer protein%3B~IMG reference gene:2504920749~PFAM: Flagellar filament outer layer protein Flaa gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1834 Trebr_1835 Trebr_1835 Trebr_1835 2162229 2162723 - Lipoprotein LpqB%2C GerMN domain protein InterPro IPR019606~KEGG: ssm:Spirs_2927 lipoprotein LpqB%2C GerMN domain protein~PFAM: Lipoprotein LpqB%2C GerMN domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920750~PFAM: Sporulation and spore germination gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1835 Trebr_1836 Trebr_1836 Trebr_1836 2162720 2163754 - cell wall hydrolase/autolysin COGs: COG0860 N-acetylmuramoyl-L-alanine amidase~InterPro IPR002508~KEGG: tde:TDE1714 N-acetylmuramoyl-L-alanine amidase~PFAM: Cell wall hydrolase/autolysin%2C catalytic~SMART: Cell wall hydrolase/autolysin%2C catalytic~SPTR: N-acetylmuramoyl-L-alanine amidase%2C family 3%3B~IMG reference gene:2504920751~PFAM: N-acetylmuramoyl-L-alanine amidase gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1836 Trebr_1837 Trebr_1837 Trebr_1837 2163751 2165442 - ATP-grasp fold domain protein%2C DUF201-type COGs: COG0439 Biotin carboxylase~InterPro IPR003806~KEGG: tde:TDE2209 CarB family protein~PFAM: ATP-grasp fold%2C DUF201-type~SPTR: CarB family protein%3B~IMG reference gene:2504920752~PFAM: ATP-grasp domain gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1837 Trebr_1838 Trebr_1838 Trebr_1838 2165450 2167984 - acylneuraminate cytidylyltransferase COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog~InterPro IPR003329:IPR013217~KEGG: tde:TDE1917 cytidyltransferase-like protein~PFAM: Acylneuraminate cytidylyltransferase%3B Methyltransferase type 12~SPTR: Cytidylyltransferase domain protein%3B~IMG reference gene:2504920753~PFAM: Methyltransferase domain%3B Cytidylyltransferase gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1838 Trebr_1839 Trebr_1839 Trebr_1839 2167981 2168973 - hypothetical protein KEGG: tde:TDE1918 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920754 gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1839 Trebr_1840 Trebr_1840 Trebr_1840 2168948 2170618 - Radical SAM domain protein InterPro IPR007197~KEGG: ssm:Spirs_2933 radical SAM domain protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504920755~PFAM: Radical SAM superfamily gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1840 Trebr_1841 Trebr_1841 Trebr_1841 2170668 2172485 + Oligo-1%2C6-glucosidase COGs: COG0366 Glycosidase~InterPro IPR006589:IPR006047~KEGG: ate:Athe_0165 alpha amylase catalytic domain-containing protein~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region~PRIAM: Oligo-1%2C6-glucosidase~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~SPTR: Alpha amylase catalytic region%3B~IMG reference gene:2504920756~PFAM: Alpha amylase%2C catalytic domain gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1841 Trebr_1842 Trebr_1842 Trebr_1842 2172482 2173708 + Exodeoxyribonuclease 7 large subunit COGs: COG1570 Exonuclease VII large subunit~HAMAP: Exodeoxyribonuclease 7 large subunit~InterPro IPR003753:IPR004365:IPR020579~KEGG: tde:TDE1017 exodeoxyribonuclease VII%2C large subunit~PFAM: Exonuclease VII%2C large subunit%2C C-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~PRIAM: Exodeoxyribonuclease VII~SPTR: Exodeoxyribonuclease 7 large subunit%3B~TIGRFAM: Exonuclease VII%2C large subunit~IMG reference gene:2504920757~PFAM: Exonuclease VII%2C large subunit%3B OB-fold nucleic acid binding domain~TIGRFAM: exodeoxyribonuclease VII%2C large subunit gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1842 Trebr_1843 Trebr_1843 Trebr_1843 2173735 2173974 + Exodeoxyribonuclease 7 small subunit HAMAP: Exonuclease VII%2C small subunit~InterPro IPR003761~KEGG: tde:TDE2066 exodeoxyribonuclease VII%2C small subunit~PFAM: Exonuclease VII%2C small subunit~SPTR: Exodeoxyribonuclease 7 small subunit%3B~IMG reference gene:2504920758~PFAM: Exonuclease VII small subunit~TIGRFAM: exodeoxyribonuclease VII%2C small subunit gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1843 Trebr_1844 Trebr_1844 Trebr_1844 2173971 2176016 + DNA mismatch repair protein mutL COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase)~HAMAP: DNA mismatch repair protein mutL~InterPro IPR014763:IPR003594:IPR013507:IPR014790~KEGG: tpp:TPASS_0303 DNA mismatch repair protein MutL~PFAM: MutL%2C C-terminal%2C dimerisation%3B DNA mismatch repair protein%2C C-terminal%3B ATP-binding region%2C ATPase-like~SPTR: DNA mismatch repair protein%3B~TIGRFAM: DNA mismatch repair protein%2C N-terminal~IMG reference gene:2504920759~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B MutL C terminal dimerisation domain%3B DNA mismatch repair protein%2C C-terminal domain~TIGRFAM: DNA mismatch repair protein MutL gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1844 Trebr_1845 Trebr_1845 Trebr_1845 2176116 2178233 - Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR006597:IPR001440:IPR013105~KEGG: tde:TDE1127 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504920760~PFAM: Tetratricopeptide repeat gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1845 Trebr_1846 Trebr_1846 Trebr_1846 2178208 2179044 - Tetratricopeptide TPR_2 repeat-containing protein InterPro IPR019734:IPR013105:IPR001440~KEGG: tde:TDE1126 TPR domain-containing protein~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504920761 gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1846 Trebr_1847 Trebr_1847 Trebr_1847 2179177 2180544 + Tetratricopeptide TPR_1 repeat-containing protein InterPro IPR019734:IPR013105:IPR001440:IPR007560~KEGG: ssm:Spirs_2364 restriction endonuclease~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2%3B Restriction endonuclease%2C type IV-like%2C Mrr~SPTR: Restriction endonuclease%3B~IMG reference gene:2504920762~PFAM: Restriction endonuclease gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1847 Trebr_1848 Trebr_1848 Trebr_1848 2180546 2181256 + metallophosphoesterase InterPro IPR004843~KEGG: sta:STHERM_c06590 Ser/Thr protein phosphatase family protein~PFAM: Metallophosphoesterase~SPTR: Metallophosphoesterase%3B~IMG reference gene:2504920763 gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1848 Trebr_1849 Trebr_1849 Trebr_1849 2181253 2182158 + hypothetical protein KEGG: ssm:Spirs_2366 hypothetical protein~SPTR: Transcriptional regulator%3B~IMG reference gene:2504920764 gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1849 Trebr_1850 Trebr_1850 Trebr_1850 2182224 2183879 + protein serine/threonine phosphatase with GAF(s) sensor(s) COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit~InterPro IPR003018:IPR001932:IPR010822~KEGG: tde:TDE1123 sigma factor regulatory protein%2C putative~PFAM: Sporulation stage II%2C protein E C-terminal%3B GAF~SMART: Protein phosphatase 2C-related%3B GAF~SPTR: Putative sigma factor regulatory protein%3B~IMG reference gene:2504920765~PFAM: GAF domain%3B Stage II sporulation protein E (SpoIIE) gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1850 Trebr_1851 Trebr_1851 Trebr_1851 2183894 2184232 + anti-sigma-factor antagonist COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)~InterPro IPR003658:IPR002645~KEGG: tde:TDE1122 anti-anti-sigma factor~PFAM: Sulphate transporter/antisigma-factor antagonist STAS~SPTR: Anti-sigma factor antagonist%3B~TIGRFAM: Anti-sigma factor antagonist~IMG reference gene:2504920766~PFAM: STAS domain~TIGRFAM: anti-anti-sigma factor gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1851 Trebr_1852 Trebr_1852 Trebr_1852 2184266 2184817 + hypothetical protein KEGG: tde:TDE1121 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920767~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1852 Trebr_1853 Trebr_1853 Trebr_1853 2184910 2185131 - carbon storage regulator%2C CsrA COGs: COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing)~HAMAP: Carbon storage regulator~InterPro IPR003751~KEGG: ssm:Spirs_2607 carbon storage regulator%2C CsrA~PFAM: Carbon storage regulator~SPTR: Carbon storage regulator homolog%3B~TIGRFAM: Carbon storage regulator~IMG reference gene:2504920768~PFAM: Global regulator protein family~TIGRFAM: carbon storage regulator (csrA) gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1853 Trebr_1854 Trebr_1854 Trebr_1854 2185125 2185571 - Flagellar assembly factor fliW COGs: COG1699 conserved hypothetical protein~HAMAP: Flagellar assembly factor FliW~InterPro IPR003775~KEGG: tde:TDE2354 flagellar assembly protein FliW~PFAM: Flagellar assembly factor FliW~SPTR: Flagellar assembly factor fliW%3B~IMG reference gene:2504920769~PFAM: FliW protein gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1854 Trebr_1855 Trebr_1855 Trebr_1855 2185580 2186824 - flagellar hook-associated protein 3 COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR013384:IPR001492:IPR010810~KEGG: tde:TDE2353 flagellar hook-associated protein FlgL~PFAM: Flagellin%2C N-terminal%3B Flagellin hook%2C IN motif~SPTR: Flagellar hook-associated protein 3%3B~TIGRFAM: Flagellar hook-associated protein 3~IMG reference gene:2504920770~PFAM: Bacterial flagellin N-terminal helical region%3B Flagellin hook IN motif%3B Bacterial flagellin C-terminal helical region~TIGRFAM: flagellar hook-associated protein 3 gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1855 Trebr_1856 Trebr_1856 Trebr_1856 2186849 2188738 - flagellar hook-associated protein FlgK COGs: COG1256 Flagellar hook-associated protein~InterPro IPR002371:IPR010810:IPR010930~KEGG: tde:TDE2352 flagellar hook-associated protein FlgK~PFAM: Protein of unknown function DUF1078%2C C-terminal%3B Flagellin hook%2C IN motif~SPTR: Flagellar hook-associated protein FlgK%3B~TIGRFAM: Flagellar hook-associated protein%2C FlgK~IMG reference gene:2504920771~PFAM: Flagellin hook IN motif%3B Domain of unknown function (DUF1078)~TIGRFAM: flagellar hook-associated protein FlgK gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1856 Trebr_1857 Trebr_1857 Trebr_1857 2188748 2189248 - hypothetical protein KEGG: tde:TDE2351 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920772~PFAM: FlgN protein gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1857 Trebr_1858 Trebr_1858 Trebr_1858 2189663 2191990 + heavy metal translocating P-type ATPase COGs: COG2217 Cation transport ATPase~InterProIPR006403:IPR006416:IPR001757:IPR006121:IPR 008250:IPR005834~KEGG: cpy:Cphy_3877 copper-translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase-like hydrolase~PRIAM: Copper-exporting ATPase~SPTR: Copper-translocating P-type ATPase%3B~TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~IMG reference gene:2504920773~PFAM: E1-E2 ATPase%3B Heavy-metal-associated domain%3B haloacid dehalogenase-like hydrolase~TIGRFAM: heavy metal translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1858 Trebr_1859 Trebr_1859 Trebr_1859 2192007 2192324 + protein of unknown function DUF156 COGs: COG1937 conserved hypothetical protein~InterPro IPR003735~KEGG: ere:EUBREC_0613 hypothetical protein~PFAM: Protein of unknown function DUF156~SPTR: Uncharacterized protein conserved in bacteria%3B~IMG reference gene:2504920774~PFAM: Uncharacterised BCR%2C COG1937 gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1859 Trebr_1860 Trebr_1860 Trebr_1860 2192383 2192580 + Heavy metal transport/detoxification protein InterPro IPR006121~PFAM: Heavy metal transport/detoxification protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920775~PFAM: Heavy-metal-associated domain gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1860 Trebr_1861 Trebr_1861 Trebr_1861 2192698 2193768 - N-acetyl-gamma-glutamyl-phosphate reductase COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase~HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase~InterPro IPR000706:IPR000534:IPR012280~KEGG: clj:CLJU_c21540 N-acetyl-gamma-glutamyl-phosphate reductase~PFAM: Semialdehyde dehydrogenase%2C NAD-binding%3B Semialdehyde dehydrogenase%2C dimerisation region~PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase~SPTR: N-acetyl-gamma-glutamyl-phosphate reductase%3B~TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase~IMG reference gene:2504920776~PFAM: Semialdehyde dehydrogenase%2C dimerisation domain%3B Semialdehyde dehydrogenase%2C NAD binding domain~TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase%2C common form gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1861 Trebr_1862 Trebr_1862 Trebr_1862 2193922 2196705 - two component transcriptional regulator%2C LuxR family COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain~InterPro IPR001789:IPR000792~KEGG: sli:Slin_0550 histidine kinase~PFAM: Signal transduction response regulator%2C receiver region%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region%3B Transcription regulator LuxR%2C C-terminal~SPTR: Histidine kinase%3B~IMG reference gene:2504920777~PFAM: 7TM diverse intracellular signalling%3B Response regulator receiver domain%3B Bacterial regulatory proteins%2C luxR family gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1862 Trebr_1863 Trebr_1863 Trebr_1863 2196717 2196860 - hypothetical protein IMG reference gene:2504920778 gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1863 Trebr_1864 Trebr_1864 Trebr_1864 2197081 2198265 - protein of unknown function DUF89 InterPro IPR002791~KEGG: cai:Caci_2189 protein of unknown function DUF89~PFAM: Domain of unknown function DUF89~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920779~PFAM: Protein of unknown function DUF89 gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1864 Trebr_1865 Trebr_1865 Trebr_1865 2198479 2199702 + hypothetical protein KEGG: tde:TDE0194 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920780 gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1865 Trebr_1866 Trebr_1866 Trebr_1866 2199798 2200274 - hypothetical protein InterPro IPR019734~KEGG: tpp:TPASS_0625 hypothetical protein~SPTR: Tetratricopeptide repeat domain protein%3B~manually curated~IMG reference gene:2504920781 gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1866 Trebr_1867 Trebr_1867 Trebr_1867 2200384 2200704 - helix-turn-helix domain protein InterPro IPR001387~KEGG: bpu:BPUM_0550 transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Possible transcriptional regulator%3B~IMG reference gene:2504920782~PFAM: Helix-turn-helix gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1867 Trebr_1868 Trebr_1868 Trebr_1868 2201089 2201436 - helix-turn-helix domain protein InterPro IPR001387~KEGG: cdf:CD2041 putative regulatory protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920783~PFAM: Helix-turn-helix gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1868 Trebr_1869 Trebr_1869 Trebr_1869 2201535 2202260 + hypothetical protein IMG reference gene:2504920784 gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1869 Trebr_1870 Trebr_1870 Trebr_1870 2202828 2203379 + pseudogene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1870 Trebr_1871 Trebr_1871 Trebr_1871 2203376 2204212 + glycosyl transferase family 2 COGs: COG1216 glycosyltransferase~InterPro IPR001173~KEGG: coc:Coch_0693 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase family 2%3B~IMG reference gene:2504920786~PFAM: Glycosyl transferase family 2 gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1871 Trebr_1872 Trebr_1872 Trebr_1872 2204212 2205198 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: pgn:PGN_0225 probable glycosyltransferase~PFAM: Glycosyl transferase%2C family 2~SPTR: Probable glycosyltransferase%3B~IMG reference gene:2504920787~PFAM: Glycosyl transferase family 2 gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1872 Trebr_1873 Trebr_1873 Trebr_1873 2205199 2206737 + polysaccharide biosynthesis protein InterPro IPR002797~KEGG: dfe:Dfer_0062 polysaccharide biosynthesis protein~PFAM: Polysaccharide biosynthesis protein~SPTR: Polysaccharide biosynthesis protein%3B~manually curated~IMG reference gene:2504920788~PFAM: Polysaccharide biosynthesis protein gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1873 Trebr_1874 Trebr_1874 Trebr_1874 2206741 2207694 + glycosyl transferase family 2 COGs: COG1216 glycosyltransferase~InterPro IPR001173~KEGG: tme:Tmel_1068 glycosyl transferase family protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Predicted glycosyltransferases%3B~IMG reference gene:2504920789~PFAM: Glycosyl transferase family 2 gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1874 Trebr_1875 Trebr_1875 Trebr_1875 2207691 2208548 + glycosyl transferase family 2 InterPro IPR001173~KEGG: ppm:PPSC2_c4906 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase family 2%3B~IMG reference gene:2504920790~PFAM: Glycosyl transferase family 2 gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1875 Trebr_1876 Trebr_1876 Trebr_1876 2208548 2209738 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: bad:BAD_1387 spore coat protein~PFAM: Glycosyl transferase%2C group 1~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920791~PFAM: Glycosyl transferases group 1 gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1876 Trebr_1877 Trebr_1877 Trebr_1877 2209735 2210469 + glycosyl transferase family 25 COGs: COG3306 Glycosyltransferase involved in LPS biosynthesis~InterPro IPR002654~KEGG: bth:BT_1649 hypothetical protein~PFAM: Glycosyl transferase%2C family 25~SPTR: Glycoside transferase family 25%3B~IMG reference gene:2504920792~PFAM: Glycosyltransferase family 25 (LPS biosynthesis protein) gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1877 Trebr_1878 Trebr_1878 Trebr_1878 2210469 2211605 + hypothetical protein KEGG: bfr:BF1440 putative capsular polysaccharide polymerase~SPTR: Capsular polysaccharide biosynthesis protein%3B~IMG reference gene:2504920793 gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1878 Trebr_1879 Trebr_1879 Trebr_1879 2211627 2212733 + hypothetical protein KEGG: bth:BT_0478 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920794 gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1879 Trebr_1880 Trebr_1880 Trebr_1880 2213169 2214842 + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase~HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-di aminopimelateligase~InterPro IPR005761:IPR000713:IPR013221:IPR004101~KEGG: tde:TDE0825 UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6- diaminopimelate ligase%2C putative~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal~PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C 6-diaminopimelateligase~SPTR: UDP-N-acetylmuramyl-tripeptide synthetase%3B~TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6- diaminopimelateligase~IMG reference gene:2504920795~PFAM: Mur ligase family%2C glutamate ligase domain%3B Mur ligase family%2C catalytic domain%3B Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1880 Trebr_1881 Trebr_1881 Trebr_1881 2214839 2215960 + D-alanine--D-alanine ligase COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein~HAMAP: D-alanine--D-alanine ligase~InterPro IPR005905:IPR011127:IPR011095~KEGG: tde:TDE2385 D-alanyl-alanine synthetase A~PFAM: D-alanine--D-alanine ligase%2C C-terminal%3B D-alanine--D-alanine ligase%2C N-terminal~PRIAM: D-alanine--D-alanine ligase~SPTR: D-alanine--D-alanine ligase%3B~TIGRFAM: D-alanine--D-alanine ligase~IMG reference gene:2504920796~PFAM: D-ala D-ala ligase N-terminus%3B D-ala D-ala ligase C-terminus~TIGRFAM: D-alanine--D-alanine ligase gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1881 Trebr_1882 Trebr_1882 Trebr_1882 2215964 2217499 + UDP-N-acetylmuramoylalanine/D-glutamate ligase COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase~InterPro IPR005762:IPR013221:IPR004101~KEGG: tde:TDE0370 UDP-N-acetylmuramoylalanine--D-glutamate ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C C-terminal~PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase~SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B~TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase~IMG reference gene:2504920797~PFAM: Mur ligase middle domain~TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1882 Trebr_1883 Trebr_1883 Trebr_1883 2217538 2219460 - Long-chain-fatty-acid--CoA ligase COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming)~InterPro IPR000873~KEGG: tde:TDE2186 AMP-binding enzyme family protein~PFAM: AMP-dependent synthetase/ligase~PRIAM: Long-chain-fatty-acid--CoA ligase~SPTR: Putative long-chain-fatty-acid--CoA ligase%3B~IMG reference gene:2504920798~PFAM: AMP-binding enzyme gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1883 Trebr_1884 Trebr_1884 Trebr_1884 2219632 2220858 - Adenylosuccinate synthetase COGs: COG0104 Adenylosuccinate synthase~HAMAP: Adenylosuccinate synthetase~InterPro IPR001114~KEGG: ssm:Spirs_2415 adenylosuccinate synthetase~PFAM: Adenylosuccinate synthetase~PRIAM: Adenylosuccinate synthase~SMART: Adenylosuccinate synthetase~SPTR: Adenylosuccinate synthetase%3B~TIGRFAM: Adenylosuccinate synthetase~IMG reference gene:2504920799~PFAM: Adenylosuccinate synthetase~TIGRFAM: adenylosuccinate synthase gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1884 Trebr_1885 Trebr_1885 Trebr_1885 2221089 2221886 + flagellar basal-body rod protein FlgF COGs: COG4786 Flagellar basal body rod protein~InterPro IPR020013:IPR012836:IPR001444:IPR010930~KEGG: tde:TDE1006 flagellar basal-body rod protein FlgG~PFAM: Protein of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar basal-body rod protein FlgG%3B~TIGRFAM: Flagellar basal-body rod FlgF%3B Fagellar hook-basal body protein%2C FlgE/F/G~IMG reference gene:2504920800~PFAM: Flagella basal body rod protein%3B Domain of unknown function (DUF1078)~TIGRFAM: flagellar basal-body rod protein FlgF%3B fagellar hook-basal body proteins gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1885 Trebr_1886 Trebr_1886 Trebr_1886 2221906 2222700 + flagellar basal-body rod protein FlgG COGs: COG4786 Flagellar basal body rod protein~InterPro IPR020013:IPR012834:IPR001444:IPR010930~KEGG: tde:TDE1007 flagellar basal body rod protein FlgG~PFAM: Protein of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal~SPTR: Flagellar basal-body rod protein FlgG%3B~TIGRFAM: Flagellar basal-body rod FlgG%3B Fagellar hook-basal body protein%2C FlgE/F/G~IMG reference gene:2504920801~PFAM: Flagella basal body rod protein%3B Domain of unknown function (DUF1078)~TIGRFAM: fagellar hook-basal body proteins%3B flagellar basal-body rod protein FlgG%2C Gram-negative bacteria gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1886 Trebr_1887 Trebr_1887 Trebr_1887 2222725 2223303 + Flagellar protein FlgJ InterPro IPR019301~KEGG: tde:TDE1008 flagellar protein%2C putative~PFAM: Flagellar protein FlgJ%2C N-terminal~SPTR: Putative flagellar protein%3B~IMG reference gene:2504920802~PFAM: Rod binding protein gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1887 Trebr_1888 Trebr_1888 Trebr_1888 2223493 2225574 + small GTP-binding protein COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR005225:IPR000795:IPR004161:IPR005517:IPR 000640~KEGG: tde:TDE0947 translation elongation factor G%2C putative~PFAM: Translation elongation factor EFG/EF2%2C domain IV%3B Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C C-terminal~SPTR: Translation elongation factor G%2C putative%3B~TIGRFAM: Small GTP-binding protein~IMG reference gene:2504920803~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G%3B small GTP-binding protein domain gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1888 Trebr_1889 Trebr_1889 Trebr_1889 2225674 2226486 - Mannose-6-phosphate isomerase COGs: COG1482 Phosphomannose isomerase~InterPro IPR001250~KEGG: mannose-6-phosphate isomerase%2C class I~PFAM: Mannose-6-phosphate isomerase%2C type I~PRIAM: Mannose-6-phosphate isomerase~SPTR: Phosphomannose isomerase type I%3B~IMG reference gene:2504920804~PFAM: Phosphomannose isomerase type I gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1889 Trebr_1890 Trebr_1890 Trebr_1890 2226490 2227398 - hypothetical protein KEGG: tde:TDE0603 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920805 gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1890 Trebr_1891 Trebr_1891 Trebr_1891 2227570 2228232 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920806 gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1891 Trebr_1892 Trebr_1892 Trebr_1892 2228435 2229139 - Purine nucleoside phosphorylase deoD-type COGs: COG0813 Purine-nucleoside phosphorylase~HAMAP: Purine nucleoside phosphorylase deoD-type~InterPro IPR004402:IPR000845~KEGG: cbk:CLL_A2969 purine nucleoside phosphorylase~PFAM: Nucleoside phosphorylase~PRIAM: Purine-nucleoside phosphorylase~SPTR: Purine nucleoside phosphorylase deoD-type 2%3B~TIGRFAM: Purine nucleoside phosphorylase~IMG reference gene:2504920807~PFAM: Phosphorylase superfamily~TIGRFAM: purine-nucleoside phosphorylase%2C family 1 (deoD) gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1892 Trebr_1893 Trebr_1893 Trebr_1893 2229300 2229749 + protein of unknown function DUF107 COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity~InterPro IPR002810~KEGG: cpy:Cphy_2940 hypothetical protein~PFAM: Nodulation efficiency%2C NfeD~SPTR: Putative membrane protein%3B~IMG reference gene:2504920808~PFAM: NfeD-like gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1893 Trebr_1894 Trebr_1894 Trebr_1894 2229938 2230822 + band 7 protein COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs~InterPro IPR001107~KEGG: ere:EUBREC_3261 membrane protease subunits%2C stomatin/prohibitin-like protein~PFAM: Band 7 protein~SMART: Band 7 protein~SPTR: Band 7/Mec-2 family protein%3B~IMG reference gene:2504920809~PFAM: SPFH domain / Band 7 family gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1894 Trebr_1895 Trebr_1895 Trebr_1895 2230905 2231465 - Chromate transporter COGs: COG2059 Chromate transport protein ChrA~InterPro IPR003370~KEGG: tde:TDE1743 chromate transport protein~PFAM: Chromate transporter region~SPTR: Chromate transport protein%3B~IMG reference gene:2504920810~PFAM: Chromate transporter gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1895 Trebr_1896 Trebr_1896 Trebr_1896 2231462 2232043 - Chromate transporter COGs: COG2059 Chromate transport protein ChrA~InterPro IPR003370~KEGG: tde:TDE1744 chromate transport protein~PFAM: Chromate transporter region~SPTR: Chromate transport protein%3B~IMG reference gene:2504920811~PFAM: Chromate transporter gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1896 Trebr_1897 Trebr_1897 Trebr_1897 2232134 2233471 + MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: cpy:Cphy_3276 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: MATE efflux family protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504920812~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1897 Trebr_1898 Trebr_1898 Trebr_1898 2233558 2235042 + Ketol-acid reductoisomerase COGs: COG0059 Ketol-acid reductoisomerase~HAMAP: Ketol-acid reductoisomerase~InterPro IPR013023:IPR013116:IPR000506~KEGG: chu:CHU_1149 ketol-acid reductoisomerase~PFAM: Acetohydroxy acid isomeroreductase C-terminal%3B Acetohydroxy acid isomeroreductase%2C catalytic~PRIAM: Ketol-acid reductoisomerase~SPTR: Ketol-acid reductoisomerase%3B~TIGRFAM: Acetohydroxy acid isomeroreductase~IMG reference gene:2504920813~PFAM: Acetohydroxy acid isomeroreductase%2C catalytic domain~TIGRFAM: ketol-acid reductoisomerase gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1898 Trebr_1899 Trebr_1899 Trebr_1899 2235231 2235836 + phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein COGs: COG0560 Phosphoserine phosphatase~InterPro IPR011863:IPR005834~KEGG: bpb:bpr_I1141 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein ThrH~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein~IMG reference gene:2504920814~TIGRFAM: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1899 Trebr_1900 Trebr_1900 Trebr_1900 2235833 2236603 - Fe(3+)-transporting ATPase COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: ssm:Spirs_3150 ABC transporter related protein~PFAM: ABC transporter-like~PRIAM: Fe(3+)-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504920815~PFAM: ABC transporter gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1900 Trebr_1901 Trebr_1901 Trebr_1901 2236600 2237373 - ABC-type transporter%2C integral membrane subunit COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component~InterPro IPR000515~KEGG: slp:Slip_1021 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504920816~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1901 Trebr_1902 Trebr_1902 Trebr_1902 2237391 2238488 - NMT1/THI5 like domain protein COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components~KEGG: ssm:Spirs_3152 NMT1/THI5 like domain protein~SPTR: NMT1/THI5 like domain protein%3B~IMG reference gene:2504920817~PFAM: NMT1/THI5 like gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1902 Trebr_1903 Trebr_1903 Trebr_1903 2238669 2240054 - Valine--pyruvate transaminase COGs: COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase~InterPro IPR004839~KEGG: hch:HCH_01903 valine--pyruvate transaminase~PFAM: Aminotransferase%2C class I/II~PRIAM: Valine--pyruvate transaminase~SPTR: Alanine-alpha-ketoisovalerate/valine-pyruvate aminotransferase%3B~IMG reference gene:2504920818~PFAM: Aminotransferase class I and II gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1903 Trebr_1904 Trebr_1904 Trebr_1904 2240051 2240464 - protein of unknown function DUF583 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination~InterPro IPR007607~KEGG: tde:TDE1707 hypothetical protein~PFAM: Protein of unknown function DUF583~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920819~PFAM: Protein of unknown function%2C DUF583 gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1904 Trebr_1905 Trebr_1905 Trebr_1905 2240510 2241109 - response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: ssm:Spirs_3183 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region~SPTR: Response regulator receiver protein%3B~IMG reference gene:2504920820~PFAM: Response regulator receiver domain gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1905 Trebr_1906 Trebr_1906 Trebr_1906 2241078 2242775 - Apolipoprotein N-acyltransferase COGs: COG0815 Apolipoprotein N-acyltransferase~HAMAP: Apolipoprotein N-acyltransferase~InterPro IPR004563:IPR003010~KEGG: sta:STHERM_c18560 hypothetical protein~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~SPTR: Apolipoprotein N-acyltransferase%3B~TIGRFAM: Apolipoprotein N-acyltransferase~IMG reference gene:2504920821~PFAM: Carbon-nitrogen hydrolase~TIGRFAM: apolipoprotein N-acyltransferase gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1906 Trebr_1907 Trebr_1907 Trebr_1907 2242783 2243088 - histone family protein DNA-binding protein COGs: COG0776 Bacterial nucleoid DNA-binding protein~InterPro IPR000119~KEGG: sta:STHERM_c18570 DNA-binding protein HbbU~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein~SPTR: Histone family protein DNA-binding protein%3B~IMG reference gene:2504920822~PFAM: Bacterial DNA-binding protein gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1907 Trebr_1908 Trebr_1908 Trebr_1908 2243180 2243467 - 30S ribosomal protein S20 HAMAP: Ribosomal protein S20~InterPro IPR002583~KEGG: tde:TDE1710 30S ribosomal protein S20~PFAM: Ribosomal protein S20~SPTR: 30S ribosomal protein S20%3B~TIGRFAM: Ribosomal protein S20~manually curated~IMG reference gene:2504920823~PFAM: Ribosomal protein S20~TIGRFAM: ribosomal protein S20 gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1908 Trebr_1909 Trebr_1909 Trebr_1909 2243586 2244446 - Fmu (Sun) domain protein COGs: COG0144 tRNA and rRNA cytosine-C5-methylase~InterPro IPR001678~KEGG: tde:TDE2162 NOL1/NOP2/sun family protein~PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p~SPTR: NOL1/NOP2/sun family protein%3B~IMG reference gene:2504920824~PFAM: NOL1/NOP2/sun family gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1909 Trebr_1910 Trebr_1910 Trebr_1910 2244439 2245329 - pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: tde:TDE2195 RNA pseudouridylate synthase family protein~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Pseudouridine synthase%3B~IMG reference gene:2504920825~PFAM: RNA pseudouridylate synthase gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1910 Trebr_1911 Trebr_1911 Trebr_1911 2245326 2246741 - glycoside hydrolase family 3 domain protein COGs: COG1472 Beta-glucosidase-related glycosidase~InterPro IPR001764~KEGG: tde:TDE1221 glycosy hydrolase family protein~PFAM: Glycoside hydrolase%2C family 3%2C N-terminal~SPTR: Glycosyl hydrolase%2C family 3%3B~IMG reference gene:2504920826~PFAM: Glycosyl hydrolase family 3 N terminal domain gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1911 Trebr_1912 Trebr_1912 Trebr_1912 2246710 2248554 - TRAP dicarboxylate transporter%2C DctM subunit COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component~InterPro IPR004681:IPR010656~KEGG: tde:TDE1019 dicarboxylate transporter%2C DctM subunit%2C putative~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: Dicarboxylate transporter%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~IMG reference gene:2504920827~PFAM: DctM-like transporters%3B Tripartite ATP-independent periplasmic transporters%2C DctQ component~TIGRFAM: TRAP transporter%2C DctM subunit gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1912 Trebr_1913 Trebr_1913 Trebr_1913 2248554 2249618 - Extracellular solute-binding protein%2C family 7 COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component~InterPro IPR018389~KEGG: tde:TDE1020 dicarboxylate transporter%2C periplasmic dicarboxylate-binding protein%2C putative~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~SPTR: Tp33 protein%3B~IMG reference gene:2504920828~PFAM: Bacterial extracellular solute-binding protein%2C family 7 gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1913 Trebr_1914 Trebr_1914 Trebr_1914 2249820 2250833 - hypothetical protein COGs: COG5660 integral membrane protein~KEGG: tpp:TPASS_0956 hypothetical protein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504920829 gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1914 Trebr_1915 Trebr_1915 Trebr_1915 2251049 2252221 + glycosidase related protein COGs: COG2152 glycosylase~InterPro IPR007184~KEGG: sta:STHERM_c00940 putative glycosylase~PFAM: Glycosidase%2C PH1107-related~SPTR: Putative glycosylase%3B~IMG reference gene:2504920830~PFAM: Domain of unknown function (DUF377) gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1915 Trebr_1916 Trebr_1916 Trebr_1916 2252275 2253531 - N-acylglucosamine 2-epimerase COGs: COG2942 N-acyl-D-glucosamine 2-epimerase~InterPro IPR010819~KEGG: N-acylglucosamine 2-epimerase~PFAM: N-acylglucosamine 2-epimerase~SPTR: N-acylglucosamine 2-epimerase%3B~IMG reference gene:2504920831~PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1916 Trebr_1917 Trebr_1917 Trebr_1917 2253552 2254544 - glycosidase related protein COGs: COG2152 glycosylase~InterPro IPR007184~KEGG: ppm:PPSC2_c5160 glycosidase like protein~PFAM: Glycosidase%2C PH1107-related~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920832~PFAM: Domain of unknown function (DUF377) gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1917 Trebr_1918 Trebr_1918 Trebr_1918 2254722 2256902 - Mannan endo-1%2C4-beta-mannosidase COGs: COG3934 Endo-beta-mannanase~InterPro IPR001547:IPR015295~KEGG: tna:CTN_1345 beta-mannosidase~PFAM: Carbohydrate binding module 27%3B Glycoside hydrolase%2C family 5~PRIAM: Mannan endo-1%2C4-beta-mannosidase~SPTR: Beta-1%2C4-mannanase%3B~IMG reference gene:2504920833~PFAM: Carbohydrate binding module 27%3B Cellulase (glycosyl hydrolase family 5) gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1918 Trebr_1919 Trebr_1919 Trebr_1919 2257043 2258080 - glycoside hydrolase family 5 COGs: COG2730 Endoglucanase~InterPro IPR001547~KEGG: sta:STHERM_c07100 endoglucanase~PFAM: Glycoside hydrolase%2C family 5~SPTR: Endoglucanase%3B~IMG reference gene:2504920834~PFAM: Cellulase (glycosyl hydrolase family 5) gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1919 Trebr_1920 Trebr_1920 Trebr_1920 2258126 2259022 - ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: jde:Jden_1757 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Sugar transport system permease protein%3B~IMG reference gene:2504920835~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1920 Trebr_1921 Trebr_1921 Trebr_1921 2259025 2259900 - ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: ppm:PPSC2_c5162 sugar ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Sugar ABC transporter%2C permease protein%3B~IMG reference gene:2504920836~PFAM: Binding-protein-dependent transport system inner membrane component gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1921 Trebr_1922 Trebr_1922 Trebr_1922 2260040 2261365 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: ppy:PPE_04651 ABC-type sugar transport system%2C periplasmic component~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: ABC-type sugar transport system%2C periplasmic component%3B~IMG reference gene:2504920837~PFAM: Bacterial extracellular solute-binding protein gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1922 Trebr_1923 Trebr_1923 Trebr_1923 2261758 2262378 + hypothetical protein KEGG: sta:STHERM_c00910 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920838 gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1923 Trebr_1924 Trebr_1924 Trebr_1924 2262405 2263904 + hypothetical protein KEGG: swo:Swol_0141 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920839 gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1924 Trebr_1925 Trebr_1925 Trebr_1925 2263985 2265406 + hypothetical protein IMG reference gene:2504920840 gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1925 Trebr_1926 Trebr_1926 Trebr_1926 2265502 2266494 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: sta:STHERM_c00930 HTH-type transcriptional regulator CelR~PFAM: Periplasmic binding protein/LacI transcriptional regulator%3B HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI~SPTR: HTH-type transcriptional regulator CelR%3B~IMG reference gene:2504920841~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1926 Trebr_1927 Trebr_1927 Trebr_1927 2266561 2266845 + Stress responsive alpha-beta barrel domain-containing protein InterPro IPR013097~KEGG: pvi:Cvib_0748 stress responsive alpha-beta barrel domain-containing protein~PFAM: Stress responsive alpha-beta barrel~SPTR: Stress responsive alpha-beta barrel domain protein%3B~IMG reference gene:2504920842~PFAM: Stress responsive A/B Barrel Domain gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1927 Trebr_1928 Trebr_1928 Trebr_1928 2267006 2268670 - phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent COGs: COG0696 Phosphoglyceromutase~InterPro IPR005995:IPR011258:IPR006124~KEGG: ssm:Spirs_0213 phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent~PFAM: BPG-independent PGAM%2C N-terminal%3B Metalloenzyme~PRIAM: Phosphoglycerate mutase~SPTR: Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent%3B~TIGRFAM: Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent~IMG reference gene:2504920843~PFAM: Metalloenzyme superfamily%3B BPG-independent PGAM N-terminus (iPGM_N)~TIGRFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1928 Trebr_1929 Trebr_1929 Trebr_1929 2268751 2269458 - hypothetical protein IMG reference gene:2504920844 gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1929 Trebr_1930 Trebr_1930 Trebr_1930 2269455 2270006 - hypothetical protein IMG reference gene:2504920845 gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1930 Trebr_1931 Trebr_1931 Trebr_1931 2270143 2270469 - hypothetical protein KEGG: cts:Ctha_2655 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920846 gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1931 Trebr_1932 Trebr_1932 Trebr_1932 2270480 2271850 - Inner membrane CreD family protein COGs: COG4452 Inner membrane protein involved in colicin E2 resistance~InterPro IPR010364~KEGG: bhy:BHWA1_01610 hypothetical protein~PFAM: Uncharacterised protein family%2C inner membrane CreD~SPTR: Inner membrane CreD family protein%3B~IMG reference gene:2504920847~PFAM: Inner membrane protein CreD gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1932 Trebr_1933 Trebr_1933 Trebr_1933 2271935 2272627 - protein of unknown function UPF0005 COGs: COG0670 Integral membrane protein interacts with FtsH~InterPro IPR006214~KEGG: dvl:Dvul_0772 hypothetical protein~PFAM: Uncharacterised protein family UPF0005~SPTR: Inner membrane protein YbhL%3B~IMG reference gene:2504920848~PFAM: Uncharacterised protein family UPF0005 gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1933 Trebr_1934 Trebr_1934 Trebr_1934 2272728 2275652 + hypothetical protein COGs: COG0612 Zn-dependent peptidase~KEGG: gau:GAU_0129 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920849 gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1934 Trebr_1935 Trebr_1935 Trebr_1935 2275631 2277514 - protein of unknown function DUF115 COGs: COG2604 conserved hypothetical protein~InterPro IPR002826~KEGG: tde:TDE1315 hypothetical protein~PFAM: Protein of unknown function DUF115~SPTR: Conserved domain protein%3B~IMG reference gene:2504920850~PFAM: Protein of unknown function DUF115 gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1935 Trebr_1936 Trebr_1936 Trebr_1936 2277495 2279360 - Peptidoglycan glycosyltransferase COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2~InterPro IPR005543:IPR005311:IPR001460~KEGG: tde:TDE1314 penicillin-binding protein~PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain%3B PASTA~PRIAM: Peptidoglycan glycosyltransferase~SMART: PASTA~SPTR: Penicillin-binding protein%3B~IMG reference gene:2504920851~PFAM: Penicillin binding protein transpeptidase domain%3B Penicillin-binding Protein dimerisation domain%3B PASTA domain gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1936 Trebr_1937 Trebr_1937 Trebr_1937 2279357 2279866 - signal peptidase I InterPro IPR000223:IPR019759~KEGG: tde:TDE1313 signal peptidase I~PFAM: Peptidase S24/S26A/S26B%2C conserved region~SPTR: Signal peptidase I%3B~TIGRFAM: Peptidase S26A%2C signal peptidase I~IMG reference gene:2504920852~PFAM: Peptidase S24-like~TIGRFAM: signal peptidase I%2C bacterial type gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1937 Trebr_1938 Trebr_1938 Trebr_1938 2279914 2281116 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR002482:IPR018392:IPR016047~KEGG: tde:TDE2753 LysM/M23/M37 peptidase~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: LysM domain/M23/M37 peptidase domain protein%3B~IMG reference gene:2504920853~PFAM: Peptidase family M23%3B LysM domain gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1938 Trebr_1939 Trebr_1939 Trebr_1939 2281129 2281374 + pseudogene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1939 Trebr_1940 Trebr_1940 Trebr_1940 2281371 2283620 + polysaccharide deacetylase COGs: COG0726 xylanase/chitin deacetylase~InterPro IPR002509~KEGG: tde:TDE2434 polysaccharide deacetylase family protein~PFAM: Polysaccharide deacetylase~SPTR: Polysaccharide deacetylase family protein%3B~IMG reference gene:2504920855~PFAM: Polysaccharide deacetylase gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1940 Trebr_1941 Trebr_1941 Trebr_1941 2283746 2284870 - chorismate synthase COGs: COG0082 Chorismate synthase~InterPro IPR000453~KEGG: sta:STHERM_c05920 chorismate synthase~PFAM: Chorismate synthase~PRIAM: Chorismate synthase~SPTR: Chorismate synthase%3B~TIGRFAM: Chorismate synthase~IMG reference gene:2504920856~PFAM: Chorismate synthase~TIGRFAM: chorismate synthase gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1941 Trebr_1942 Trebr_1942 Trebr_1942 2284897 2286795 - phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I COGs: COG1109 Phosphomannomutase~InterPro IPR005844~KEGG: tde:TDE0864 phosphohexose mutase family protein~PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I~SPTR: Phosphohexose mutase family protein%3B~IMG reference gene:2504920857~PFAM: Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain III%3B Phosphoglucomutase/phosphomannomutase%2C alpha/beta/alpha domain I gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1942 Trebr_1943 Trebr_1943 Trebr_1943 2287089 2288507 + hypothetical protein KEGG: ssm:Spirs_0276 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920859 gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1943 Trebr_1944 Trebr_1944 Trebr_1944 2288497 2290089 + ABC-type transporter%2C periplasmic subunit COGs: COG4166 ABC-type oligopeptide transport system periplasmic component~InterPro IPR000914~KEGG: tde:TDE2049 solute-binding family 5 protein~PFAM: Bacterial extracellular solute-binding protein%2C family 5~SPTR: Bacterial extracellular solute-binding protein%2C family 5%3B~IMG reference gene:2504920860~PFAM: Bacterial extracellular solute-binding proteins%2C family 5 Middle gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1944 Trebr_1945 Trebr_1945 Trebr_1945 2290131 2290784 + transcriptional regulator%2C CarD family COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD~InterPro IPR003711~KEGG: sta:STHERM_c18970 transcriptional regulatory protein~PFAM: Transcription factor CarD~SPTR: Transcriptional regulator%2C CarD family%3B~IMG reference gene:2504920861~PFAM: CarD-like/TRCF domain gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1945 Trebr_1946 Trebr_1946 Trebr_1946 2290768 2292006 + 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase~HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase%3B 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core~InterPro IPR003526:IPR001228~KEGG: tpp:TPASS_0512 hypothetical protein~PFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core%3B 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~SPTR: Bifunctional enzyme IspD/ispF%3B~TIGRFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core~IMG reference gene:2504920862~PFAM: YgbB family%3B Uncharacterized protein family UPF0007~TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase%3B 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1946 Trebr_1947 Trebr_1947 Trebr_1947 2292085 2295936 - hypothetical protein KEGG: ssm:Spirs_3200 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920863 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1947 Trebr_1948 Trebr_1948 Trebr_1948 2295988 2296659 - Haloacid dehalogenase domain protein hydrolase COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834~KEGG: tde:TDE2294 HAD superfamily hydrolase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: Phosphoglycolate phosphatase%3B~IMG reference gene:2504920864~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 1 with third motif having Dx(3-4)D or Dx(3-4)E gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1948 Trebr_1949 Trebr_1949 Trebr_1949 2296656 2297777 - hypothetical protein KEGG: spn:SP_1772 cell wall surface anchor family protein~SPTR: Cell wall surface anchor family protein%3B~IMG reference gene:2504920865 gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1949 Trebr_1950 Trebr_1950 Trebr_1950 2297781 2298194 - Biopolymer transport protein ExbD/TolR COGs: COG0848 Biopolymer transport protein~InterPro IPR003400~KEGG: ssm:Spirs_3203 biopolymer transport protein ExbD/TolR~PFAM: Biopolymer transport protein ExbD/TolR~SPTR: Biopolymer transport protein ExbD/TolR%3B~IMG reference gene:2504920866~PFAM: Biopolymer transport protein ExbD/TolR gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1950 Trebr_1951 Trebr_1951 Trebr_1951 2298196 2298819 - MotA/TolQ/ExbB proton channel COGs: COG0811 Biopolymer transport protein~InterPro IPR002898~KEGG: ssm:Spirs_3204 MotA/TolQ/ExbB proton channel~PFAM: MotA/TolQ/ExbB proton channel~SPTR: MotA/TolQ/ExbB proton channel%3B~IMG reference gene:2504920867~PFAM: MotA/TolQ/ExbB proton channel family gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1951 Trebr_1952 Trebr_1952 Trebr_1952 2298837 2300522 - hypothetical protein KEGG: ssm:Spirs_3205 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920868 gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1952 Trebr_1953 Trebr_1953 Trebr_1953 2301012 2304152 - hypothetical protein COGs: COG1729 conserved hypothetical protein~KEGG: ssm:Spirs_3206 TPR repeat-containing protein~SPTR: TPR repeat-containing protein%3B~IMG reference gene:2504920869 gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1953 Trebr_1954 Trebr_1954 Trebr_1954 2304205 2305584 - hypothetical protein KEGG: tpp:TPASS_0457 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920870 gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1954 Trebr_1955 Trebr_1955 Trebr_1955 2305660 2310141 - CoA-substrate-specific enzyme activase COGs: COG3580 conserved hypothetical protein~InterPro IPR008275:IPR002731:IPR018709~KEGG: tde:TDE1695 CoA-substrate-specific enzyme activase domain-containing protein~PFAM: Protein of unknown function DUF2229%2C CoA enzyme activase%3B ATPase%2C BadF/BadG/BcrA/BcrD type~SPTR: CoA-substrate-specific enzyme activase domain protein%3B~TIGRFAM: CoA enzyme activase~IMG reference gene:2504920871~PFAM: 2-hydroxyglutaryl-CoA dehydratase%2C D-component%3B BadF/BadG/BcrA/BcrD ATPase family%3B CoA enzyme activase uncharacterised domain (DUF2229)~TIGRFAM: CoA-substrate-specific enzyme activase%2C putative gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1955 Trebr_1956 Trebr_1956 Trebr_1956 2310157 2310894 - hypothetical protein IMG reference gene:2504920872 gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1956 Trebr_1957 Trebr_1957 Trebr_1957 2310909 2312474 - hypothetical protein KEGG: tet:TTHERM_00321740 Kinesin motor domain containing protein~SPTR: M protein repeat protein%3B~manually curated~IMG reference gene:2504920873 gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1957 Trebr_1958 Trebr_1958 Trebr_1958 2312453 2314144 - adenylate/guanylate cyclase with integral membrane sensor COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR001054:IPR003660~KEGG: sta:STHERM_c01070 adenylate cyclase~PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase%3B HAMP linker domain~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase~SPTR: Adenylyl cyclase class-3/4/guanylyl cyclase%3B~IMG reference gene:2504920874~PFAM: Adenylate and Guanylate cyclase catalytic domain gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1958 Trebr_1959 Trebr_1959 Trebr_1959 2314208 2315827 + integral membrane protein MviN COGs: COG0728 membrane protein putative virulence factor~InterPro IPR004268~KEGG: tde:TDE0342 integral membrane protein MviN~PFAM: Flagellin assembly%2C membrane protein MviN~SPTR: Integral membrane protein MviN%3B~TIGRFAM: Flagellin assembly%2C membrane protein MviN~IMG reference gene:2504920875~PFAM: MviN-like protein~TIGRFAM: integral membrane protein MviN gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1959 Trebr_1960 Trebr_1960 Trebr_1960 2315970 2317118 + peptidase M24 COGs: COG0006 Xaa-Pro aminopeptidase~InterPro IPR000994~KEGG: bmq:BMQ_3917 Xaa-Pro dipeptidase~PFAM: Peptidase M24%2C structural domain~SPTR: Xaa-Pro dipeptidase%3B~IMG reference gene:2504920876~PFAM: Metallopeptidase family M24 gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1960 Trebr_1961 Trebr_1961 Trebr_1961 2317293 2320256 - Tetratricopeptide TPR_1 repeat-containing protein COGs: COG3063 Tfp pilus assembly protein PilF~InterPro IPR019734:IPR001440~KEGG: tde:TDE0447 TPR domain-containing protein~PFAM: Tetratricopeptide TPR-1~SPTR: TPR domain protein%3B~IMG reference gene:2504920877~PFAM: Tetratricopeptide repeat gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1961 Trebr_1962 Trebr_1962 Trebr_1962 2320327 2321844 - Fibronectin type III domain protein InterPro IPR003961~KEGG: tpp:TPASS_0263 hypothetical protein~PFAM: Fibronectin%2C type III~SPTR: Fibronectin type III domain protein%3B~manually curated~IMG reference gene:2504920878 gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1962 Trebr_1963 Trebr_1963 Trebr_1963 2321843 2323870 + UvrABC system protein C COGs: COG0322 Nuclease subunit of the excinuclease complex~HAMAP: UvrABC system protein C~InterPro IPR004791:IPR000305:IPR001943:IPR001162~KEGG: tde:TDE2478 excinuclease ABC%2C C subunit~PFAM: Excinuclease ABC%2C C subunit%2C C-terminal%3B Excinuclease ABC%2C C subunit%2C N-terminal%3B UvrB/UvrC protein~SMART: Excinuclease ABC%2C C subunit%2C N-terminal~SPTR: UvrABC system protein C%3B~TIGRFAM: Excinuclease ABC%2C C subunit~manually curated~IMG reference gene:2504920879~PFAM: UvrB/uvrC motif%3B UvrC Helix-hairpin-helix N-terminal%3B GIY-YIG catalytic domain~TIGRFAM: excinuclease ABC%2C C subunit gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1963 Trebr_1964 Trebr_1964 Trebr_1964 2323849 2325147 - processing peptidase COGs: COG0612 Zn-dependent peptidase~InterPro IPR011765:IPR007863~KEGG: dau:Daud_0936 peptidase M16 domain-containing protein~PFAM: Peptidase M16%2C N-terminal%3B Peptidase M16%2C C-terminal~PRIAM: processing peptidase~SPTR: Peptidase M16 domain protein%3B~IMG reference gene:2504920880~PFAM: Peptidase M16 inactive domain%3B Insulinase (Peptidase family M16) gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1964 Trebr_1965 Trebr_1965 Trebr_1965 2325151 2327250 - Polyribonucleotide nucleotidyltransferase COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)~HAMAP: Polyribonucleotide nucleotidyltransferase~InterProIPR012162:IPR004087:IPR001247:IPR015847:IPR 015848:IPR018111:IPR003029~KEGG: tde:TDE1041 polynucleotide phosphorylase/polyadenylase~PFAM: Exoribonuclease%2C phosphorolytic domain 1%3B Exoribonuclease%2C phosphorolytic domain 2%3B Polynucleotide phosphorylase%2C phosphorolytic RNA-binding%2C bacterial/organelle-type%3B K Homology%2C type 1%2C subgroup%3B Ribosomal protein S1%2C RNA binding domain~PRIAM: Polyribonucleotide nucleotidyltransferase~SPTR: Polyribonucleotide nucleotidyltransferase%3B~TIGRFAM: Polyribonucleotide nucleotidyltransferase~IMG reference gene:2504920881~PFAM: KH domain%3B S1 RNA binding domain%3B 3' exoribonuclease family%2C domain 1%3B Polyribonucleotide nucleotidyltransferase%2C RNA binding domain%3B 3' exoribonuclease family%2C domain 2~TIGRFAM: polyribonucleotide nucleotidyltransferase gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1965 Trebr_1966 Trebr_1966 Trebr_1966 2327385 2327654 - ribosomal protein S15 COGs: COG0184 Ribosomal protein S15P/S13E~InterPro IPR005290:IPR000589~KEGG: tde:TDE1040 30S ribosomal protein S15~PFAM: Ribosomal protein S15~SPTR: 30S ribosomal protein S15%3B~TIGRFAM: Ribosomal protein S15%2C bacterial-type~IMG reference gene:2504920882~PFAM: Ribosomal protein S15~TIGRFAM: ribosomal protein S15%2C bacterial/organelle gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1966 Trebr_1967 Trebr_1967 Trebr_1967 2327694 2328548 - FAD synthetase COGs: COG0196 FAD synthase~InterPro IPR015864~KEGG: tde:TDE1039 riboflavin biosynthesis protein%2C putative~PFAM: FAD synthetase~SPTR: Riboflavin biosynthesis protein%2C putative%3B~IMG reference gene:2504920883~PFAM: FAD synthetase gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1967 Trebr_1968 Trebr_1968 Trebr_1968 2328541 2329554 - tRNA pseudouridine synthase B COGs: COG0130 Pseudouridine synthase~HAMAP: tRNA pseudouridine synthase B~InterPro IPR014780:IPR002501~KEGG: tde:TDE1104 tRNA pseudouridine synthase B~PFAM: Pseudouridine synthase II%2C TruB%2C N-terminal~SPTR: tRNA pseudouridine synthase B%3B~TIGRFAM: Pseudouridine synthase II%2C TruB%2C N-terminal%2C bacterial-type~IMG reference gene:2504920884~PFAM: TruB family pseudouridylate synthase (N terminal domain)~TIGRFAM: tRNA pseudouridine 55 synthase gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1968 Trebr_1969 Trebr_1969 Trebr_1969 2329577 2329948 - Ribosome-binding factor A COGs: COG0858 Ribosome-binding factor A~HAMAP: Ribosome-binding factor A~InterPro IPR000238~KEGG: tde:TDE1105 ribosome-binding factor A~PFAM: Ribosome-binding factor A~SPTR: Ribosome-binding factor A%3B~TIGRFAM: Ribosome-binding factor A~IMG reference gene:2504920885~PFAM: Ribosome-binding factor A~TIGRFAM: ribosome-binding factor A gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1969 Trebr_1970 Trebr_1970 Trebr_1970 2329957 2332770 - translation initiation factor IF-2 COGs: COG0532 Translation initiation factor 2 (IF-2%3B GTPase)~InterProIPR000178:IPR005225:IPR006847:IPR000795:IPR 004161~KEGG: tde:TDE1106 translation initiation factor IF-2~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation initiation factor IF-2%2C N-terminal%3B Translation elongation factor EFTu/EF1A%2C domain 2~SPTR: Translation initiation factor IF-2%3B~TIGRFAM: Initiation factor 2%3B Small GTP-binding protein~IMG reference gene:2504920886~PFAM: Elongation factor Tu domain 2%3B Translation-initiation factor 2%3B Translation initiation factor IF-2%2C N-terminal region%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation initiation factor IF-2 gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1970 Trebr_1971 Trebr_1971 Trebr_1971 2332779 2334230 - NusA antitermination factor COGs: COG0195 Transcription elongation factor~InterPro IPR010213:IPR013735:IPR003029~KEGG: ssm:Spirs_2027 transcription termination factor NusA~PFAM: Transcription factor NusA%2C N-terminal%3B Ribosomal protein S1%2C RNA binding domain~SPTR: Transcription termination factor NusA%3B~TIGRFAM: Transcription termination factor NusA~IMG reference gene:2504920887~PFAM: NusA N-terminal domain%3B S1 RNA binding domain~TIGRFAM: transcription termination factor NusA gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1971 Trebr_1972 Trebr_1972 Trebr_1972 2334244 2334753 - Ribosome maturation factor rimP HAMAP: Uncharacterised protein family UPF0090%2C bacteria~InterPro IPR020790:IPR003728~KEGG: tde:TDE1108 hypothetical protein~PFAM: Uncharacterised protein family UPF0090~SPTR: Ribosome maturation factor rimP%3B~IMG reference gene:2504920888~PFAM: Uncharacterised BCR%2C YhbC family COG0779 gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1972 Trebr_1973 Trebr_1973 Trebr_1973 2335043 2335717 - hypothetical protein IMG reference gene:2504920889 gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1973 Trebr_1974 Trebr_1974 Trebr_1974 2335754 2335885 + pseudogene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1974 Trebr_1975 Trebr_1975 Trebr_1975 2336351 2337628 - hypothetical protein KEGG: elm:ELI_1913 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920891 gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1975 Trebr_1976 Trebr_1976 Trebr_1976 2338374 2339273 - tetracycline resistance leader peptide KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920892~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1976 Trebr_1977 Trebr_1977 Trebr_1977 2339660 2340055 - pseudogene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1977 Trebr_1978 Trebr_1978 Trebr_1978 2340109 2341350 - transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: wch:wcw_0483 transposase~PFAM: Transposase%2C mutator type~SPTR: Transposase%3B~IMG reference gene:2504920894~PFAM: Transposase%2C Mutator family gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1978 Trebr_1979 Trebr_1979 Trebr_1979 2341678 2342595 - SH3 type 3 domain protein InterPro IPR003646:IPR013247~KEGG: lbf:LBF_0444 putative lipoprotein~PFAM: SH3%2C type 3~SMART: Bacterial SH3-like region~IMG reference gene:2504920895~PFAM: Bacterial SH3 domain gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1979 Trebr_1980 Trebr_1980 Trebr_1980 2342597 2345056 - Peptidase M23 InterPro IPR016047~KEGG: ssm:Spirs_1766 hypothetical protein~PFAM: Peptidase M23~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920896~PFAM: Peptidase family M23 gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1980 Trebr_1981 Trebr_1981 Trebr_1981 2345414 2346106 - SH3 type 3 domain protein InterPro IPR013247~PFAM: SH3%2C type 3~IMG reference gene:2504920897~PFAM: Bacterial SH3 domain gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1981 Trebr_1982 Trebr_1982 Trebr_1982 2346096 2349356 - hypothetical protein KEGG: sta:STHERM_c20200 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920898 gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1982 Trebr_1983 Trebr_1983 Trebr_1983 2349958 2351241 - SH3 type 3 domain protein InterPro IPR013247~PFAM: SH3%2C type 3~IMG reference gene:2504920899~PFAM: Bacterial SH3 domain gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1983 Trebr_1984 Trebr_1984 Trebr_1984 2351247 2351570 - hypothetical protein IMG reference gene:2504920900 gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1984 Trebr_1985 Trebr_1985 Trebr_1985 2351752 2352675 - hypothetical protein KEGG: ssm:Spirs_1767 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920901 gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1985 Trebr_1986 Trebr_1986 Trebr_1986 2352706 2354028 - Phenylacetate--CoA ligase COGs: COG1541 Coenzyme F390 synthetase~InterPro IPR000873~KEGG: dvl:Dvul_0571 phenylacetate--CoA ligase~PFAM: AMP-dependent synthetase/ligase~PRIAM: Phenylacetate--CoA ligase~SPTR: Phenylacetate--CoA ligase%3B~IMG reference gene:2504920902~PFAM: AMP-binding enzyme gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1986 Trebr_1987 Trebr_1987 Trebr_1987 2354087 2354653 - Indolepyruvate ferredoxin oxidoreductase COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit~InterPro IPR019752~KEGG: pdi:BDI_1799 indolepyruvate oxidoreductase subunit beta~PFAM: Pyruvate/ketoisovalerate oxidoreductase~PRIAM: Indolepyruvate ferredoxin oxidoreductase~SPTR: Indolepyruvate oxidoreductase subunit IorB%3B~IMG reference gene:2504920903~PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase~TIGRFAM: indolepyruvate ferredoxin oxidoreductase%2C beta subunit gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1987 Trebr_1988 Trebr_1988 Trebr_1988 2354670 2356409 - Indolepyruvate ferredoxin oxidoreductase COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits~InterPro IPR011766~KEGG: ssm:Spirs_3355 thiamine pyrophosphate protein domain protein TPP-binding protein~PFAM: Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~PRIAM: Indolepyruvate ferredoxin oxidoreductase~SPTR: Thiamine pyrophosphate protein domain protein TPP-binding protein%3B~IMG reference gene:2504920904~PFAM: domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: indolepyruvate ferredoxin oxidoreductase%2C alpha subunit gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1988 Trebr_1989 Trebr_1989 Trebr_1989 2356632 2357804 + Ornithine decarboxylase COGs: COG0019 Diaminopimelate decarboxylase~InterPro IPR000183~KEGG: tde:TDE1109 pyridoxal-dependent family decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2~PRIAM: Ornithine decarboxylase~SPTR: Decarboxylase%2C pyridoxal-dependent family%3B~IMG reference gene:2504920905~PFAM: Pyridoxal-dependent decarboxylase%2C C-terminal sheet domain%3B Pyridoxal-dependent decarboxylase%2C pyridoxal binding domain gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1989 Trebr_1990 Trebr_1990 Trebr_1990 2357832 2358554 - purine nucleoside phosphorylase COGs: COG0813 Purine-nucleoside phosphorylase~InterPro IPR004402:IPR000845~KEGG: apv:Apar_0141 purine nucleoside phosphorylase~PFAM: Nucleoside phosphorylase~PRIAM: Purine-nucleoside phosphorylase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Purine nucleoside phosphorylase~IMG reference gene:2504920906~PFAM: Phosphorylase superfamily~TIGRFAM: purine-nucleoside phosphorylase%2C family 1 (deoD) gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1990 Trebr_1991 Trebr_1991 Trebr_1991 2358564 2359109 - YbaK/prolyl-tRNA synthetase associated region COGs: COG2606 conserved hypothetical protein~InterPro IPR007214~KEGG: ols:Olsu_1303 YbaK/EbsC protein~PFAM: YbaK/aminoacyl-tRNA synthetase associated region~SPTR: YbaK/ebsC protein%3B~IMG reference gene:2504920907~PFAM: YbaK / prolyl-tRNA synthetases associated domain~TIGRFAM: ybaK/ebsC protein gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1991 Trebr_1992 Trebr_1992 Trebr_1992 2359103 2360977 - hypothetical protein IMG reference gene:2504920908 gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1992 Trebr_1993 Trebr_1993 Trebr_1993 2360979 2362235 - serine/threonine protein kinase COGs: COG0515 Serine/threonine protein kinase~InterPro IPR002290:IPR017442~KEGG: hmg:100197403 similar to predicted protein~PFAM: Serine/threonine-protein kinase-like domain~SMART: Serine/threonine-protein kinase domain~SPTR: Upstream serine/threonine kinase for the SNF1 complex%3B~IMG reference gene:2504920909~PFAM: Protein kinase domain gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1993 Trebr_1994 Trebr_1994 Trebr_1994 2362422 2362820 + helix-turn-helix domain protein InterPro IPR001387~KEGG: fsu:Fisuc_2499 hypothetical protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Toxin-antitoxin system%2C antitoxin component%2C Xre family%3B~IMG reference gene:2504920910~PFAM: Helix-turn-helix gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1994 Trebr_1995 Trebr_1995 Trebr_1995 2363027 2363743 + hypothetical protein KEGG: tde:TDE2734 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920911 gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1995 Trebr_1996 Trebr_1996 Trebr_1996 2363928 2364929 - hypothetical protein KEGG: tde:TDE0308 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920912 gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1996 Trebr_1997 Trebr_1997 Trebr_1997 2364922 2365902 - hypothetical protein KEGG: bbu:BBJ29 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920913 gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1997 Trebr_1998 Trebr_1998 Trebr_1998 2365899 2366652 - pseudogene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1998 Trebr_1999 Trebr_1999 Trebr_1999 2366656 2367840 - protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: bbu:BBJ27 hypothetical protein~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Efflux ABC transporter%2C permease protein%3B~IMG reference gene:2504920915~PFAM: Predicted permease gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_1999 Trebr_2000 Trebr_2000 Trebr_2000 2367837 2368505 - Phosphonate-transporting ATPase COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: bpo:BP951000_0905 ABC transporter ATP-binding protein YbbA~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter ATP binding protein%2C YbbA%3B~IMG reference gene:2504920916~PFAM: ABC transporter gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2000 Trebr_2001 Trebr_2001 Trebr_2001 2368507 2369232 - hypothetical protein KEGG: tde:TDE0307 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920917 gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2001 Trebr_2002 Trebr_2002 Trebr_2002 2369204 2369965 - hypothetical protein KEGG: bpo:BP951000_0908 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920918 gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2002 Trebr_2003 Trebr_2003 Trebr_2003 2370500 2371102 - hypothetical protein IMG reference gene:2504920919 gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2003 Trebr_2004 Trebr_2004 Trebr_2004 2371180 2372817 - hypothetical protein KEGG: gau:GAU_3908 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920920~PFAM: Peptidase M30 gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2004 Trebr_2005 Trebr_2005 Trebr_2005 2372909 2373604 - hypothetical protein IMG reference gene:2504920921 gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2005 Trebr_2006 Trebr_2006 Trebr_2006 2373612 2374952 - hypothetical protein IMG reference gene:2504920922 gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2006 Trebr_2007 Trebr_2007 Trebr_2007 2374967 2375410 - hypothetical protein IMG reference gene:2504920923 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2007 Trebr_2008 Trebr_2008 Trebr_2008 2375425 2375844 - hypothetical protein IMG reference gene:2504920924 gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2008 Trebr_2009 Trebr_2009 Trebr_2009 2375882 2376871 - hypothetical protein IMG reference gene:2504920925 gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2009 Trebr_2010 Trebr_2010 Trebr_2010 2377096 2377878 + hypothetical protein KEGG: tde:TDE1939 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920926 gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2010 Trebr_2011 Trebr_2011 Trebr_2011 2378069 2379757 + sulphate transporter COGs: COG0659 Sulfate permease and related transporter (MFS superfamily)~InterPro IPR011547:IPR002645~KEGG: fsu:Fisuc_0530 sulfate transporter~PFAM: Sulphate transporter%3B Sulphate transporter/antisigma-factor antagonist STAS~SPTR: Sulfate permease%3B~IMG reference gene:2504920927~PFAM: Sulfate transporter family%3B STAS domain~TIGRFAM: high affinity sulphate transporter 1 gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2011 Trebr_2012 Trebr_2012 Trebr_2012 2379950 2381299 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: ccb:Clocel_0513 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504920928~PFAM: Bacterial extracellular solute-binding protein gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2012 Trebr_2013 Trebr_2013 Trebr_2013 2381427 2382272 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: ccb:Clocel_0514 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504920929~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2013 Trebr_2014 Trebr_2014 Trebr_2014 2382269 2383123 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: cst:CLOST_1213 maltose transport protein amyc~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Maltose transport protein AmyC%3B~IMG reference gene:2504920930~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2014 Trebr_2015 Trebr_2015 Trebr_2015 2383268 2383699 + phenylacetic acid degradation-related protein COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism~InterPro IPR003736:IPR006683~KEGG: bpb:bpr_III143 thioesterase family protein~PFAM: Thioesterase superfamily~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Phenylacetic acid degradation-related protein~IMG reference gene:2504920931~PFAM: Thioesterase superfamily~TIGRFAM: uncharacterized domain 1 gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2015 Trebr_2016 Trebr_2016 Trebr_2016 2383821 2386400 + Beta-mannosidase COGs: COG3250 Beta-galactosidase/beta-glucuronidase~InterPro IPR006104~KEGG: sta:STHERM_c02500 beta-mannosidase precursor~PFAM: Glycoside hydrolase family 2%2C carbohydrate-binding~PRIAM: Beta-mannosidase~SPTR: Beta-mannosidase%3B~IMG reference gene:2504920932~PFAM: Glycosyl hydrolases family 2%2C TIM barrel domain%3B Glycosyl hydrolases family 2%2C sugar binding domain gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2016 Trebr_2017 Trebr_2017 Trebr_2017 2386605 2387768 - ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: ssm:Spirs_1200 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504920933~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2017 Trebr_2018 Trebr_2018 Trebr_2018 2387770 2388684 - ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: ssm:Spirs_1199 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504920934~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2018 Trebr_2019 Trebr_2019 Trebr_2019 2388802 2390085 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: ssm:Spirs_1198 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504920935~PFAM: Bacterial extracellular solute-binding protein gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2019 Trebr_2020 Trebr_2020 Trebr_2020 2390261 2391610 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: sta:STHERM_c02610 putative sugar ABC transporter sugar-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504920936~PFAM: Bacterial extracellular solute-binding protein gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2020 Trebr_2021 Trebr_2021 Trebr_2021 2391607 2392851 - ROK family protein COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000835:IPR000600~KEGG: ssm:Spirs_1197 ROK family protein~PFAM: ROK%3B HTH transcriptional regulator%2C MarR~SPTR: Regulatory protein MarR%3B~IMG reference gene:2504920937~PFAM: ROK family%3B MarR family gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2021 Trebr_2022 Trebr_2022 Trebr_2022 2393095 2393898 - Glucosamine-6-phosphate deaminase COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase~HAMAP: Glucosamine-6-phosphate deaminase~InterPro IPR018322:IPR006148~KEGG: bvu:BVU_4120 glucosamine-6-phosphate deaminase~PFAM: Glucosamine/galactosamine-6-phosphate isomerase~PRIAM: Glucosamine-6-phosphate deaminase~SPTR: Glucosamine-6-phosphate deaminase%3B~TIGRFAM: Glucosamine-6-phosphate isomerase%2C subgroup~IMG reference gene:2504920938~PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase~TIGRFAM: glucosamine-6-phosphate isomerase gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2022 Trebr_2023 Trebr_2023 Trebr_2023 2394015 2395181 - N-acetylglucosamine-6-phosphate deacetylase COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase~InterPro IPR003764:IPR006680~KEGG: ssm:Spirs_1362 N-acetylglucosamine-6-phosphate deacetylase~PFAM: Amidohydrolase 1~PRIAM: N-acetylglucosamine-6-phosphate deacetylase~SPTR: N-acetylglucosamine-6-phosphate deacetylase%3B~TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase~IMG reference gene:2504920939~PFAM: Amidohydrolase family~TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2023 Trebr_2024 Trebr_2024 Trebr_2024 2395385 2397856 + glycosyltransferase 36 COGs: COG3459 Cellobiose phosphorylase~InterPro IPR009342:IPR010383:IPR010403~KEGG: cth:Cthe_0275 cellobiose phosphorylase~PFAM: Glycosyltransferase 36%3B Putative carbohydrate binding%3B Glycosyltransferase 36 associated~SPTR: Glycosyltransferase 36%3B~IMG reference gene:2504920940~PFAM: Glycosyltransferase family 36%3B Putative carbohydrate binding domain%3B Glycosyltransferase 36 associated family gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2024 Trebr_2025 Trebr_2025 Trebr_2025 2397952 2398836 + hypothetical protein IMG reference gene:2504920941 gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2025 Trebr_2026 Trebr_2026 Trebr_2026 2398974 2399222 - hypothetical protein KEGG: hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920942~PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2026 Trebr_2027 Trebr_2027 Trebr_2027 2399236 2400432 - YidE/YbjL duplication COGs: COG2985 permease~InterPro IPR006512~KEGG: toc:Toce_1835 YidE/YbjL duplication~PFAM: YidE/YbjL duplication~SPTR: Predicted permease%3B~TIGRFAM: YidE/YbjL duplication~IMG reference gene:2504920943~PFAM: Predicted Permease Membrane Region~TIGRFAM: AspT/YidE/YbjL antiporter duplication domain gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2027 Trebr_2028 Trebr_2028 Trebr_2028 2400448 2402061 - L-aspartate oxidase COGs: COG0029 Aspartate oxidase~InterPro IPR003953~KEGG: ipo:Ilyop_2558 fumarate reductase/succinate dehydrogenase flavoprotein domain protein~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal~PRIAM: L-aspartate oxidase~SPTR: Succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit%3B~IMG reference gene:2504920944~PFAM: FAD binding domain gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2028 Trebr_2029 Trebr_2029 Trebr_2029 2402072 2402746 - ferredoxin InterPro IPR001041~KEGG: ipo:Ilyop_2559 ferredoxin~PFAM: Ferredoxin~SPTR: CO dehydrogenase/acetyl-CoA synthase alpha subunit%3B~IMG reference gene:2504920945~PFAM: 2Fe-2S iron-sulfur cluster binding domain gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2029 Trebr_2030 Trebr_2030 Trebr_2030 2402759 2403586 - oxidoreductase FAD/NAD(P)-binding domain protein COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase~InterPro IPR008333:IPR001433:IPR019480~KEGG: ipo:Ilyop_2560 oxidoreductase FAD/NAD(P)-binding domain protein~PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Oxidoreductase FAD-binding region%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain~SPTR: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases%3B~IMG reference gene:2504920946~PFAM: Oxidoreductase FAD-binding domain%3B Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2030 Trebr_2031 Trebr_2031 Trebr_2031 2403586 2404614 - 4Fe-4S ferredoxin%2C iron-sulfur binding protein KEGG: ipo:Ilyop_2561 4Fe-4S ferredoxin%2C iron-sulfur binding protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920947 gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2031 Trebr_2032 Trebr_2032 Trebr_2032 2404614 2405540 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein InterPro IPR001450~KEGG: mta:Moth_0814 4Fe-4S ferredoxin%2C iron-sulfur binding~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920948 gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2032 Trebr_2033 Trebr_2033 Trebr_2033 2405525 2405971 - methyl-viologen-reducing hydrogenase delta subunit COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit~InterPro IPR003813~KEGG: ipo:Ilyop_2563 methyl-viologen-reducing hydrogenase delta subunit~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit~SPTR: Hydrogenase%2C methyl-violgen-reducing type%2C delta subunit%3B~IMG reference gene:2504920949~PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2033 Trebr_2034 Trebr_2034 Trebr_2034 2405962 2407959 - FAD dependent oxidoreductase COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins~InterPro IPR006076:IPR001450~KEGG: ipo:Ilyop_2564 FAD dependent oxidoreductase~PFAM: FAD dependent oxidoreductase%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: Heterodisulfide reductase%2C subunit A and related polyferredoxins%3B~IMG reference gene:2504920950~PFAM: Pyridine nucleotide-disulphide oxidoreductase gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2034 Trebr_2035 Trebr_2035 Trebr_2035 2407981 2408373 - heterodisulfide reductase subunit C-like protein COGs: COG1150 Heterodisulfide reductase subunit C~KEGG: ipo:Ilyop_2565 heterodisulfide reductase subunit C-like protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920951 gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2035 Trebr_2036 Trebr_2036 Trebr_2036 2408375 2409172 - CoB--CoM heterodisulfide reductase COGs: COG2048 Heterodisulfide reductase subunit B~InterPro IPR004017~KEGG: ipo:Ilyop_2566 CoB--CoM heterodisulfide reductase~PFAM: Cysteine-rich region%2C CCG~PRIAM: CoB--CoM heterodisulfide reductase~SPTR: Heterodisulfide reductase%2C subunit B%3B~IMG reference gene:2504920952~PFAM: Cysteine-rich domain gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2036 Trebr_2037 Trebr_2037 Trebr_2037 2409293 2410669 - Fumarate hydratase class II COGs: COG0114 Fumarase~HAMAP: Fumarate hydratase class II~InterPro IPR005677:IPR000362:IPR018951~KEGG: afn:Acfer_2053 fumarate hydratase%2C class II~PFAM: Fumarate lyase%3B Fumarase C%2C C-terminal~PRIAM: Fumarate hydratase~SPTR: Fumarase%3B~TIGRFAM: Fumarate hydratase%2C class II~IMG reference gene:2504920953~PFAM: Fumarase C C-terminus%3B Lyase~TIGRFAM: fumarate hydratase%2C class II gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2037 Trebr_2038 Trebr_2038 Trebr_2038 2410692 2411639 - L-lactate dehydrogenase COGs: COG0039 Malate/lactate dehydrogenase~HAMAP: L-lactate dehydrogenase~InterPro IPR011304:IPR001236~KEGG: L-lactate dehydrogenase~PFAM: Lactate/malate dehydrogenase~PRIAM: L-lactate dehydrogenase~SPTR: L-lactate dehydrogenase%3B~TIGRFAM: L-lactate dehydrogenase~IMG reference gene:2504920954~PFAM: lactate/malate dehydrogenase%2C alpha/beta C-terminal domain%3B lactate/malate dehydrogenase%2C NAD binding domain~TIGRFAM: L-lactate dehydrogenase gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2038 Trebr_2039 Trebr_2039 Trebr_2039 2411845 2412669 - hypothetical protein KEGG: bcl:ABC3712 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920955 gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2039 Trebr_2040 Trebr_2040 Trebr_2040 2412666 2412950 - regulatory protein ArsR InterPro IPR001845~KEGG: bad:BAD_0895 transcriptional regulator~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR~SPTR: Toxin-antitoxin system%2C antitoxin component%2C ArsR family%3B~IMG reference gene:2504920956~PFAM: Bacterial regulatory protein%2C arsR family gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2040 Trebr_2041 Trebr_2041 Trebr_2041 2413075 2414499 + hypothetical protein KEGG: bpo:BP951000_2129 TPR domain-containing protein~SPTR: TPR domain-containing protein%3B~IMG reference gene:2504920957 gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2041 Trebr_2042 Trebr_2042 Trebr_2042 2414571 2415860 - uracil-xanthine permease COGs: COG2233 Xanthine/uracil permease~InterPro IPR006042:IPR006043~KEGG: ssm:Spirs_3643 uracil-xanthine permease~PFAM: Xanthine/uracil/vitamin C permease~SPTR: Uracil-xanthine permease%3B~TIGRFAM: Xanthine/uracil permease~IMG reference gene:2504920958~PFAM: Permease family~TIGRFAM: uracil-xanthine permease gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2042 Trebr_2043 Trebr_2043 Trebr_2043 2415980 2417038 + hypothetical protein COGs: COG3391 conserved hypothetical protein~KEGG: sta:STHERM_c03300 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920959~TIGRFAM: 40-residue YVTN family beta-propeller repeat gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2043 Trebr_2044 Trebr_2044 Trebr_2044 2417041 2419227 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR003660~KEGG: tde:TDE0640 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504920960~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2044 Trebr_2045 Trebr_2045 Trebr_2045 2419464 2420561 - 3-isopropylmalate dehydrogenase COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase~HAMAP: Isopropylmalate dehydrogenase~InterPro IPR004429:IPR001804~KEGG: cbt:CLH_0305 3-isopropylmalate dehydrogenase~PFAM: Isocitrate/isopropylmalate dehydrogenase~PRIAM: 3-isopropylmalate dehydrogenase~SPTR: 3-isopropylmalate dehydrogenase%3B~TIGRFAM: Isopropylmalate dehydrogenase~IMG reference gene:2504920961~PFAM: Isocitrate/isopropylmalate dehydrogenase~TIGRFAM: 3-isopropylmalate dehydrogenase gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2045 Trebr_2046 Trebr_2046 Trebr_2046 2420877 2421203 + transcriptional regulator%2C PadR-like family COGs: COG1695 transcriptional regulator protein~InterPro IPR005149~KEGG: csh:Closa_2423 transcriptional regulator%2C PadR-like family~PFAM: Transcriptional regulator PadR N-terminal-like~SPTR: Transcriptional regulator%3B~IMG reference gene:2504920962~PFAM: Transcriptional regulator PadR-like family gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2046 Trebr_2047 Trebr_2047 Trebr_2047 2421219 2421872 + protein of unknown function DUF1700 COGs: COG4709 membrane protein~InterPro IPR012963~KEGG: elm:ELI_0871 hypothetical protein~PFAM: Protein of unknown function DUF1700~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920963~PFAM: Protein of unknown function (DUF1700) gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2047 Trebr_2048 Trebr_2048 Trebr_2048 2421869 2422732 + hypothetical protein KEGG: cpy:Cphy_1272 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920964 gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2048 Trebr_2049 Trebr_2049 Trebr_2049 2422760 2422984 + phage shock protein C%2C PspC COGs: COG1983 Putative stress-responsive transcriptional regulator protein~InterPro IPR007168~KEGG: mba:Mbar_A0475 stress-responsive transcriptional regulator~PFAM: PspC~SPTR: Putative stress-responsive transcriptional regulator%3B~IMG reference gene:2504920965~PFAM: PspC domain gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2049 Trebr_2050 Trebr_2050 Trebr_2050 2423156 2423509 - helix-turn-helix domain protein InterPro IPR001387~KEGG: dae:Dtox_1519 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920966~PFAM: Helix-turn-helix gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2050 Trebr_2051 Trebr_2051 Trebr_2051 2423655 2424380 + hypothetical protein IMG reference gene:2504920967 gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2051 Trebr_2052 Trebr_2052 Trebr_2052 2424478 2425902 + polysaccharide biosynthesis protein COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid~InterPro IPR002797~KEGG: cbt:CLH_3203 putative polysaccharide transporter~PFAM: Polysaccharide biosynthesis protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920968~PFAM: Polysaccharide biosynthesis protein gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2052 Trebr_2053 Trebr_2053 Trebr_2053 2425899 2426912 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: cbt:CLH_3200 glycosyl transferase%2C group 2 family protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase%2C group 2 family protein%3B~IMG reference gene:2504920969~PFAM: Glycosyl transferase family 2 gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2053 Trebr_2054 Trebr_2054 Trebr_2054 2426909 2428093 + hypothetical protein KEGG: amu:Amuc_2095 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920970~PFAM: Polysaccharide pyruvyl transferase gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2054 Trebr_2055 Trebr_2055 Trebr_2055 2428083 2428868 + glycosyltransferase sugar-binding region containing DXD motif COGs: COG3774 Mannosyltransferase OCH1~InterPro IPR007577~KEGG: lsl:LSL_0695 glycosyltransferase~PFAM: Glycosyltransferase sugar-binding region containing DXD motif~SPTR: Glycosyltransferase%3B~IMG reference gene:2504920971~PFAM: Glycosyltransferase sugar-binding region containing DXD motif gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2055 Trebr_2056 Trebr_2056 Trebr_2056 2428868 2429938 + hypothetical protein KEGG: sag:SAG1168 polysaccharide biosynthesis protein CpsH(V)~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920972 gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2056 Trebr_2057 Trebr_2057 Trebr_2057 2429925 2430734 + glycosyl transferase family 2 InterPro IPR001173~KEGG: apr:Apre_0246 hypothetical protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920973~PFAM: Glycosyl transferase family 2 gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2057 Trebr_2058 Trebr_2058 Trebr_2058 2430731 2431918 + glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: bam:Bamb_0762 glycosyl transferase%2C group 1~PFAM: Glycosyl transferase%2C group 1~SPTR: WfaV%3B~IMG reference gene:2504920974~PFAM: Glycosyl transferases group 1 gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2058 Trebr_2059 Trebr_2059 Trebr_2059 2432066 2432881 - tetracycline resistance leader peptide KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920975~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2059 Trebr_2060 Trebr_2060 Trebr_2060 2433320 2433544 - hypothetical protein IMG reference gene:2504920976 gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2060 Trebr_2061 Trebr_2061 Trebr_2061 2433754 2434122 - endoribonuclease L-PSP COGs: COG0251 Putative translation initiation inhibitor yjgF family~InterPro IPR006056:IPR006175~KEGG: dhd:Dhaf_2962 endoribonuclease L-PSP~PFAM: Endoribonuclease L-PSP~SPTR: Putative uncharacterized protein%3B~TIGRFAM: YjgF-like protein~IMG reference gene:2504920977~PFAM: Endoribonuclease L-PSP~TIGRFAM: endoribonuclease L-PSP%2C putative gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2061 Trebr_2062 Trebr_2062 Trebr_2062 2434186 2435100 + PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: mcl:MCCL_0332 hypothetical protein~PFAM: Carbohydrate/purine kinase~SPTR: Sugar kinases%2C ribokinase family%3B~IMG reference gene:2504920978~PFAM: pfkB family carbohydrate kinase gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2062 Trebr_2063 Trebr_2063 Trebr_2063 2435269 2436828 + glutamyl-tRNA synthetase COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase~InterPro IPR004527:IPR020058~KEGG: tde:TDE0204 glutamyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain~PRIAM: Glutamate--tRNA ligase~SPTR: Glutamyl-tRNA synthetase%3B~TIGRFAM: Glutamyl-tRNA synthetase%2C class Ic%2C bacterial/mitochondrial~IMG reference gene:2504920979~PFAM: tRNA synthetases class I (E and Q)%2C catalytic domain~TIGRFAM: glutamyl-tRNA synthetase%2C bacterial family gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2063 Trebr_2064 Trebr_2064 Trebr_2064 2437009 2437923 - periplasmic binding protein/LacI transcriptional regulator COGs: COG1879 ABC-type sugar transport system periplasmic component~KEGG: cpy:Cphy_3277 periplasmic binding protein/LacI transcriptional regulator~SPTR: Periplasmic binding protein/LacI transcriptional regulator%3B~IMG reference gene:2504920980 gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2064 Trebr_2065 Trebr_2065 Trebr_2065 2437997 2438992 - ABC-type transporter%2C integral membrane subunit COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components~InterPro IPR001851~KEGG: csh:Closa_1913 inner-membrane translocator~PFAM: Bacterial inner-membrane translocator~SPTR: Inner-membrane translocator%3B~IMG reference gene:2504920981~PFAM: Branched-chain amino acid transport system / permease component gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2065 Trebr_2066 Trebr_2066 Trebr_2066 2439028 2440536 - Monosaccharide-transporting ATPase COGs: COG1129 ABC-type sugar transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: csh:Closa_1912 ABC transporter related protein~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504920982~PFAM: ABC transporter gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2066 Trebr_2067 Trebr_2067 Trebr_2067 2440547 2441806 - N-acylglucosamine 2-epimerase COGs: COG2942 N-acyl-D-glucosamine 2-epimerase~InterPro IPR010819~KEGG: sli:Slin_6381 N-acylglucosamine 2-epimerase~PFAM: N-acylglucosamine 2-epimerase~SPTR: N-acylglucosamine 2-epimerase%3B~IMG reference gene:2504920983~PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2067 Trebr_2068 Trebr_2068 Trebr_2068 2441877 2442890 - transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: bae:BATR1942_03035 LacI family transcriptional regulator~PFAM: Periplasmic binding protein/LacI transcriptional regulator%3B HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920984~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2068 Trebr_2069 Trebr_2069 Trebr_2069 2443347 2445428 - heavy metal translocating P-type ATPase COGs: COG2217 Cation transport ATPase~InterProIPR006404:IPR006416:IPR001757:IPR008250:IPR 005834~KEGG: str:Sterm_2557 cadmium-translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B Haloacid dehalogenase-like hydrolase~PRIAM: Cadmium-exporting ATPase~SPTR: Putative uncharacterized protein%3B~TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~IMG reference gene:2504920986~PFAM: E1-E2 ATPase%3B haloacid dehalogenase-like hydrolase~TIGRFAM: heavy metal translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC%3B heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2069 Trebr_2070 Trebr_2070 Trebr_2070 2445437 2445802 - transcriptional regulator%2C ArsR family COGs: COG0640 transcriptional regulator protein~InterPro IPR001845~KEGG: elm:ELI_0446 hypothetical protein~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920987~PFAM: Bacterial regulatory protein%2C arsR family gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2070 Trebr_2071 Trebr_2071 Trebr_2071 2445969 2446649 - hypothetical protein KEGG: tde:TDE1050 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920988~PFAM: KaiC gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2071 Trebr_2072 Trebr_2072 Trebr_2072 2446658 2448748 - translation elongation factor G COGs: COG0480 Translation elongation factors (GTPase)~InterProIPR004540:IPR005225:IPR000795:IPR004161:IPR 005517:IPR000640~KEGG: tde:TDE1049 elongation factor G~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal~SPTR: Elongation factor G 1%3B~TIGRFAM: Translation elongation factor EFG/EF2%3B Small GTP-binding protein~IMG reference gene:2504920989~PFAM: Elongation factor Tu domain 2%3B Elongation factor G C-terminus%3B Elongation factor Tu GTP binding domain%3B Elongation factor G%2C domain IV~TIGRFAM: translation elongation factor EF-G%3B small GTP-binding protein domain gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2072 Trebr_2073 Trebr_2073 Trebr_2073 2448849 2450306 - hypothetical protein IMG reference gene:2504920990 gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2073 Trebr_2074 Trebr_2074 Trebr_2074 2450358 2451188 - Sporulation domain-containing protein InterPro IPR007730~KEGG: tpa:TP0297 hypothetical protein~PFAM: Sporulation/cell division region%2C bacteria~SPTR: Sporulation related repeat protein%3B~IMG reference gene:2504920991~PFAM: Sporulation related domain gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2074 Trebr_2075 Trebr_2075 Trebr_2075 2451192 2451863 - Dephospho-CoA kinase COGs: COG0237 Dephospho-CoA kinase~HAMAP: Dephospho-CoA kinase~InterPro IPR001977~KEGG: tpp:TPASS_0296 hypothetical protein~SPTR: Dephospho-CoA kinase%3B~TIGRFAM: Dephospho-CoA kinase~IMG reference gene:2504920992~PFAM: Dephospho-CoA kinase~TIGRFAM: dephospho-CoA kinase gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2075 Trebr_2076 Trebr_2076 Trebr_2076 2451863 2454643 - DNA polymerase I COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains~InterProIPR018320:IPR002421:IPR008918:IPR002562:IPR 001098:IPR020046:IPR020047~KEGG: tde:TDE1637 DNA polymerase I~PFAM: DNA-directed DNA polymerase%2C family A%2C palm domain%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B 5'-3' exonuclease%2C SAM-fold domain%3B 3'-5' exonuclease~SMART: 5'-3' exonuclease%2C N-terminal%3B Helix-hairpin-helix motif%2C class 2%3B 3'-5' exonuclease%3B DNA-directed DNA polymerase%2C family A%2C palm domain~SPTR: DNA polymerase I%3B~TIGRFAM: DNA polymerase 1~IMG reference gene:2504920993~PFAM: 3'-5' exonuclease%3B 5'-3' exonuclease%2C C-terminal SAM fold%3B DNA polymerase family A%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain~TIGRFAM: DNA polymerase I gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2076 Trebr_2077 Trebr_2077 Trebr_2077 2454731 2455654 - tetracycline resistance leader peptide KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920994~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2077 Trebr_2078 Trebr_2078 Trebr_2078 2456164 2457726 - hypothetical protein SPTR: MspA protein%3B~IMG reference gene:2504920995 gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2078 Trebr_2079 Trebr_2079 Trebr_2079 2457968 2458621 + hypothetical protein KEGG: tde:TDE1642 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920996 gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2079 Trebr_2080 Trebr_2080 Trebr_2080 2458914 2460464 + Autotransporter beta- domain protein InterPro IPR005546~PFAM: Autotransporter beta-domain~SPTR: MspA protein%3B~IMG reference gene:2504920997~PFAM: Autotransporter beta-domain gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2080 Trebr_2081 Trebr_2081 Trebr_2081 2460896 2461735 + Conserved hypothetical protein CHP01784 InterPro IPR010106~KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP01784~IMG reference gene:2504920998~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2081 Trebr_2082 Trebr_2082 Trebr_2082 2461743 2462846 - integrase family protein InterPro IPR002104~KEGG: ssm:Spirs_1738 hypothetical protein~PFAM: Integrase%2C catalytic core%2C phage~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504920999~PFAM: Phage integrase family gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2082 Trebr_2083 Trebr_2083 Trebr_2083 2462988 2464322 + Acetate kinase COGs: COG0282 Acetate kinase~HAMAP: Acetate kinase~InterPro IPR004372:IPR000890~KEGG: tpp:TPASS_0476 acetate kinase~PFAM: Acetate/butyrate kinase~PRIAM: Acetate kinase~SPTR: Acetate kinase%3B~TIGRFAM: Acetate kinase~IMG reference gene:2504921000~PFAM: Acetokinase family~TIGRFAM: acetate kinase gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2083 Trebr_2084 Trebr_2084 Trebr_2084 2464343 2465491 + PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: nar:Saro_0151 PfkB~PFAM: Carbohydrate/purine kinase~SPTR: Sugar kinase%2C ribokinase family protein%3B~IMG reference gene:2504921001~PFAM: pfkB family carbohydrate kinase gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2084 Trebr_2085 Trebr_2085 Trebr_2085 2465477 2466076 - DJ-1 family protein COGs: COG0693 Putative intracellular protease/amidase~InterPro IPR006287:IPR002818~KEGG: sta:STHERM_c18300 hypothetical protein~PFAM: ThiJ/PfpI~SPTR: Putative uncharacterized protein%3B~TIGRFAM: DJ-1~IMG reference gene:2504921002~PFAM: DJ-1/PfpI family~TIGRFAM: DJ-1 family protein gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2085 Trebr_2086 Trebr_2086 Trebr_2086 2466159 2467400 + response regulator receiver protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR001789~KEGG: ssm:Spirs_4133 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region~SPTR: Response regulator receiver protein%3B~IMG reference gene:2504921003~PFAM: Response regulator receiver domain gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2086 Trebr_2087 Trebr_2087 Trebr_2087 2467419 2469503 + Hpt sensor hybrid histidine kinase COGs: COG0642 Signal transduction histidine kinase~InterPro IPR003661:IPR003594:IPR001789:IPR008207~KEGG: ssm:Spirs_4132 multi-sensor hybrid histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B Signal transduction response regulator%2C receiver region%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B Signal transduction response regulator%2C receiver region%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region~SPTR: Multi-sensor hybrid histidine kinase%3B~IMG reference gene:2504921004~PFAM: Response regulator receiver domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B His Kinase A (phosphoacceptor) domain%3B Hpt domain gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2087 Trebr_2088 Trebr_2088 Trebr_2088 2469500 2470369 + histidinol phosphate phosphatase HisJ family COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family~InterPro IPR010140:IPR004013~KEGG: sta:STHERM_c16830 putative histidinol-phosphatase~PFAM: PHP%2C C-terminal~SPTR: Probable histidinol-phosphatase%3B~TIGRFAM: Histidinol phosphate phosphatase%2C HisJ~IMG reference gene:2504921005~PFAM: PHP domain~TIGRFAM: histidinol phosphate phosphatase HisJ family gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2088 Trebr_2089 Trebr_2089 Trebr_2089 2470415 2470771 - transcriptional regulator%2C TraR/DksA family COGs: COG1734 DnaK suppressor protein~InterPro IPR000962~KEGG: ssm:Spirs_0464 transcriptional regulator%2C TraR/DksA family~SPTR: Transcriptional regulator%2C TraR/DksA family%3B~IMG reference gene:2504921006~PFAM: Prokaryotic dksA/traR C4-type zinc finger~TIGRFAM: RNA polymerase-binding protein DksA gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2089 Trebr_2090 Trebr_2090 Trebr_2090 2470880 2471098 + Translation initiation factor IF-1 COGs: COG0361 Translation initiation factor 1 (IF-1)~HAMAP: Translation initiation factor IF-1~InterPro IPR004368:IPR006196~KEGG: tde:TDE2087 translation initiation factor IF-1~PFAM: S1%2C IF1 type~SPTR: Translation initiation factor IF-1%3B~TIGRFAM: Translation initiation factor IF-1~IMG reference gene:2504921007~PFAM: Translation initiation factor 1A / IF-1~TIGRFAM: translation initiation factor IF-1 gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2090 Trebr_2091 Trebr_2091 Trebr_2091 2471120 2471695 - heat shock protein DnaJ domain protein COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain~InterPro IPR001623~KEGG: pag:PLES_51451 chaperone protein DnaJ~PFAM: Heat shock protein DnaJ%2C N-terminal~SMART: Heat shock protein DnaJ%2C N-terminal~SPTR: Chaperone protein dnaJ%3B~IMG reference gene:2504921008~PFAM: DnaJ domain gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2091 Trebr_2092 Trebr_2092 Trebr_2092 2471757 2472428 - Smr protein/MutS2 COGs: COG2840 conserved hypothetical protein~InterPro IPR002625~KEGG: tde:TDE1254 Smr domain-containing protein~PFAM: Smr protein/MutS2 C-terminal~SMART: Smr protein/MutS2 C-terminal~SPTR: Smr domain protein%3B~IMG reference gene:2504921009~PFAM: Smr domain gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2092 Trebr_2093 Trebr_2093 Trebr_2093 2472425 2473870 - hypothetical protein SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921010 gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2093 Trebr_2094 Trebr_2094 Trebr_2094 2473819 2475519 - von Willebrand factor type A InterPro IPR002035:IPR019734:IPR011717:IPR013105~KEGG: tde:TDE1251 BatB protein%2C putative~PFAM: von Willebrand factor%2C type A%3B Tetratricopeptide TPR-4%3B Tetratricopeptide TPR2~SMART: von Willebrand factor%2C type A%3B Tetratricopeptide repeat~SPTR: Putative BatB protein%3B~IMG reference gene:2504921011~PFAM: von Willebrand factor type A domain%3B Tetratricopeptide repeat gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2094 Trebr_2095 Trebr_2095 Trebr_2095 2475516 2476517 - von Willebrand factor type A InterPro IPR002035~KEGG: tde:TDE1250 BatA protein%2C putative~PFAM: von Willebrand factor%2C type A~SMART: von Willebrand factor%2C type A~SPTR: BatA protein%2C putative%3B~IMG reference gene:2504921012~PFAM: von Willebrand factor type A domain gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2095 Trebr_2096 Trebr_2096 Trebr_2096 2476517 2477503 - hypothetical protein KEGG: tde:TDE1249 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921013 gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2096 Trebr_2097 Trebr_2097 Trebr_2097 2477505 2478407 - protein of unknown function DUF58 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain)~InterPro IPR002881~KEGG: tde:TDE1248 hypothetical protein~PFAM: Protein of unknown function DUF58~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921014~PFAM: Protein of unknown function DUF58 gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2097 Trebr_2098 Trebr_2098 Trebr_2098 2478409 2479461 - ATPase associated with various cellular activities AAA_3 COGs: COG0714 MoxR-like ATPase~InterPro IPR011703~KEGG: tde:TDE0319 hypothetical protein~PFAM: ATPase associated with various cellular activities%2C AAA-3~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921015~PFAM: ATPase family associated with various cellular activities (AAA) gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2098 Trebr_2099 Trebr_2099 Trebr_2099 2479574 2480884 + aminotransferase class I and II COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR004839~KEGG: ssm:Spirs_1023 aminotransferase class I and II~PFAM: Aminotransferase%2C class I/II~SPTR: Aminotransferase class I and II%3B~IMG reference gene:2504921016~PFAM: Aminotransferase class I and II gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2099 Trebr_2100 Trebr_2100 Trebr_2100 2480865 2482169 + putative lipoprotein KEGG: tde:TDE2185 putative lipoprotein~SPTR: Lipoprotein%2C putative%3B~IMG reference gene:2504921017~PFAM: Bacterial extracellular solute-binding protein gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2100 Trebr_2101 Trebr_2101 Trebr_2101 2482223 2482615 + hypothetical protein KEGG: tde:TDE1987 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921018 gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2101 Trebr_2102 Trebr_2102 Trebr_2102 2482830 2484656 + Phosphoenolpyruvate carboxykinase (GTP) COGs: COG1274 Phosphoenolpyruvate carboxykinase (GTP)~HAMAP: Phosphoenolpyruvate carboxykinase%2C GTP-utilising~InterPro IPR008209~KEGG: tpp:TPASS_0122 phosphoenolpyruvate carboxykinase~PFAM: Phosphoenolpyruvate carboxykinase%2C GTP-utilising~PRIAM: Phosphoenolpyruvate carboxykinase (GTP)~SPTR: Phosphoenolpyruvate carboxykinase [GTP]%3B~IMG reference gene:2504921019~PFAM: Phosphoenolpyruvate carboxykinase gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2102 Trebr_2103 Trebr_2103 Trebr_2103 2484807 2485019 + BFD domain protein (2Fe-2S)-binding domain protein InterPro IPR007419~PFAM: BFD-like [2Fe-2S]-binding region~SPTR: BFD-like [2Fe-2S] binding domain%3B~IMG reference gene:2504921020~PFAM: BFD-like [2Fe-2S] binding domain gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2103 Trebr_2104 Trebr_2104 Trebr_2104 2485033 2485896 + TM1410 hypothetical-related protein COGs: COG3868 conserved hypothetical protein~InterPro IPR004352~KEGG: ols:Olsu_0819 hypothetical protein~PFAM: TM1410 hypothetical-related protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921021~PFAM: TM1410 hypothetical-related protein gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2104 Trebr_2105 Trebr_2105 Trebr_2105 2485972 2486178 - 50S ribosomal protein L31 COGs: COG0254 Ribosomal protein L31~HAMAP: 50S ribosomal protein L31~InterPro IPR002150~KEGG: ssm:Spirs_3178 ribosomal protein L31~PFAM: Ribosomal protein L31~SPTR: 50S ribosomal protein L31%3B~TIGRFAM: Ribosomal protein L31~IMG reference gene:2504921022~PFAM: Ribosomal protein L31~TIGRFAM: ribosomal protein L31 gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2105 Trebr_2106 Trebr_2106 Trebr_2106 2486297 2488030 - transcription termination factor Rho COGs: COG1158 Transcription termination factor~InterProIPR004665:IPR011129:IPR003593:IPR011112:IPR 011113:IPR000194~KEGG: tpp:TPASS_0254 transcription termination factor Rho~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B Rho termination factor%2C RNA-binding%3B Rho termination factor%2C N-terminal~SMART: Cold shock protein%3B ATPase%2C AAA+ type%2C core~SPTR: Transcription termination factor Rho%3B~TIGRFAM: Transcription termination factor Rho~IMG reference gene:2504921023~PFAM: Rho termination factor%2C N-terminal domain%3B ATP synthase alpha/beta family%2C nucleotide-binding domain%3B Rho termination factor%2C RNA-binding domain~TIGRFAM: transcription termination factor Rho gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2106 Trebr_2107 Trebr_2107 Trebr_2107 2488313 2489587 + hypothetical protein KEGG: seu:SEQ_0938 Mac family protein~SPTR: Putative Mac family protein%3B~IMG reference gene:2504921024~PFAM: Mac 1 gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2107 Trebr_2108 Trebr_2108 Trebr_2108 2489836 2490243 + hypothetical protein IMG reference gene:2504921025 gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2108 Trebr_2109 Trebr_2109 Trebr_2109 2490233 2491273 + hypothetical protein COGs: COG2933 SAM-dependent methyltransferase~KEGG: tde:TDE2541 hypothetical protein~SPTR: Methyltransferase%3B~IMG reference gene:2504921026~PFAM: FtsJ-like methyltransferase gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2109 Trebr_2110 Trebr_2110 Trebr_2110 2491266 2492183 - Homoserine O-succinyltransferase COGs: COG1897 Homoserine trans-succinylase~HAMAP: Homoserine O-succinyltransferase~InterPro IPR005697~KEGG: homoserine O-succinyltransferase~PFAM: Homoserine O-succinyltransferase~PRIAM: Homoserine O-succinyltransferase~SPTR: Homoserine O-succinyltransferase%3B~TIGRFAM: Homoserine O-succinyltransferase~IMG reference gene:2504921027~PFAM: Homoserine O-succinyltransferase~TIGRFAM: homoserine O-succinyltransferase gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2110 Trebr_2111 Trebr_2111 Trebr_2111 2492232 2493209 + acetyl hydrolase%2C putative COGs: COG0657 Esterase/lipase~InterPro IPR013094~KEGG: tde:TDE2263 acetyl hydrolase%2C putative~SPTR: Acetyl hydrolase%2C putative%3B~IMG reference gene:2504921028~PFAM: alpha/beta hydrolase fold gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2111 Trebr_2112 Trebr_2112 Trebr_2112 2493197 2494648 + peptidase U32 COGs: COG0826 Collagenase and related protease~InterPro IPR001539~KEGG: tde:TDE2262 U32 family peptidase~PFAM: Peptidase U32~SPTR: Peptidase%2C U32 family%3B~IMG reference gene:2504921029~PFAM: Peptidase family U32 gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2112 Trebr_2113 Trebr_2113 Trebr_2113 2494882 2496729 - (p)ppGpp synthetase I%2C SpoT/RelA COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase~InterProIPR004811:IPR003607:IPR006674:IPR007685:IPR 004095~KEGG: sta:STHERM_c19300 putative GTP pyrophosphokinase~PFAM: RelA/SpoT%3B Metal-dependent phosphohydrolase%2C HD region%2C subdomain%3B TGS~PRIAM: GTP diphosphokinase~SMART: Metal-dependent phosphohydrolase%2C HD region~SPTR: GTP pyrophosphokinase%3B~TIGRFAM: RelA/SpoT protein~IMG reference gene:2504921030~PFAM: TGS domain%3B Region found in RelA / SpoT proteins~TIGRFAM: (p)ppGpp synthetase%2C RelA/SpoT family gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2113 Trebr_2114 Trebr_2114 Trebr_2114 2496726 2497766 - protein-(glutamine-N5) methyltransferase%2C release factor-specific COGs: COG2890 Methylase of polypeptide chain release factors~InterPro IPR004556:IPR019874:IPR007848~KEGG: tpp:TPASS_0052 protoporphyrinogen oxidase~PFAM: Methyltransferase small~SPTR: Protein-(Glutamine-N5) methyltransferase%2C release factor-specific%3B~TIGRFAM: Protein-(glutamine-N5) methyltransferase%2C release factor-specific%3B Modification methylase HemK~IMG reference gene:2504921031~PFAM: Methyltransferase small domain~TIGRFAM: HemK family putative methylases%3B protein-(glutamine-N5) methyltransferase%2C release factor-specific gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2114 Trebr_2115 Trebr_2115 Trebr_2115 2497769 2498848 - Peptide chain release factor 1 COGs: COG0216 Protein chain release factor A~HAMAP: Peptide chain release factor 1~InterPro IPR004373:IPR005139:IPR000352~KEGG: tde:TDE2489 peptide chain release factor 1~PFAM: Class I peptide chain release factor%3B Peptide chain release factor~SPTR: Peptide chain release factor 1%3B~TIGRFAM: Peptide chain release factor 1~IMG reference gene:2504921032~PFAM: PCRF domain%3B RF-1 domain~TIGRFAM: peptide chain release factor 1 gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2115 Trebr_2116 Trebr_2116 Trebr_2116 2499027 2499614 + regulatory protein TetR InterPro IPR001647~KEGG: csh:Closa_2674 transcriptional regulator%2C TetR family~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921033~PFAM: Bacterial regulatory proteins%2C tetR family~TIGRFAM: probable dihydroxyacetone kinase regulator gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2116 Trebr_2117 Trebr_2117 Trebr_2117 2499804 2501579 + 67 kDa myosin-cross-reactive antigen family protein COGs: COG4716 Myosin-crossreactive antigen~InterPro IPR010354~KEGG: smu:SMU.515 myosin-cross-reactive antigen~PFAM: Streptococcal 67kDa myosin-cross-reactive antigen like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921034~PFAM: Streptococcal 67 kDa myosin-cross-reactive antigen like family gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2117 Trebr_2118 Trebr_2118 Trebr_2118 2501822 2502376 + Protein of unknown function DUF2179 COGs: COG4843 conserved hypothetical protein~InterPro IPR019264~KEGG: cbf:CLI_0673 hypothetical protein~PFAM: Protein of unknown function DUF2179~SPTR: UPF0316 protein CBF_0642%3B~IMG reference gene:2504921035~PFAM: Uncharacterized protein conserved in bacteria (DUF2179) gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2118 Trebr_2119 Trebr_2119 Trebr_2119 2507881 2508075 - hypothetical protein IMG reference gene:2504921040 gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2119 Trebr_2120 Trebr_2120 Trebr_2120 2508288 2509517 - YibE/F family protein COGs: COG5438 multitransmembrane protein~InterPro IPR012507~KEGG: drt:Dret_2291 YibE/F family protein~PFAM: YibE/F-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921041~PFAM: YibE/F-like protein gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2120 Trebr_2121 Trebr_2121 Trebr_2121 2509611 2511302 - Alkaline phosphatase COGs: COG1785 Alkaline phosphatase~InterPro IPR001952~KEGG: ccb:Clocel_2509 alkaline phosphatase~PFAM: Alkaline phosphatase~SMART: Alkaline phosphatase~SPTR: Alkaline phosphatase%3B~IMG reference gene:2504921042~PFAM: Alkaline phosphatase gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2121 Trebr_2122 Trebr_2122 Trebr_2122 2511513 2512103 - CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase COGs: COG0558 Phosphatidylglycerophosphate synthase~InterPro IPR004570:IPR000462~KEGG: tde:TDE2572 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase~SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase%3B~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~IMG reference gene:2504921043~PFAM: CDP-alcohol phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2122 Trebr_2123 Trebr_2123 Trebr_2123 2512152 2512880 - hypothetical protein IMG reference gene:2504921044 gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2123 Trebr_2124 Trebr_2124 Trebr_2124 2512877 2513698 - transport-associated protein InterPro IPR007055~KEGG: tde:TDE0009 hypothetical protein~PFAM: Transport-associated~SPTR: Phospholipid-binding domain protein%3B~IMG reference gene:2504921045 gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2124 Trebr_2125 Trebr_2125 Trebr_2125 2513796 2514362 + NUDIX hydrolase InterPro IPR000086~KEGG: tde:TDE0010 MutT/NUDIX family protein~PFAM: NUDIX hydrolase domain~SPTR: MutT/nudix family protein%3B~IMG reference gene:2504921046~PFAM: NUDIX domain gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2125 Trebr_2126 Trebr_2126 Trebr_2126 2514427 2515122 - hypothetical protein KEGG: tpp:TPASS_0769 outer membrane protein~SPTR: Outer membrane protein%3B~IMG reference gene:2504921047 gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2126 Trebr_2127 Trebr_2127 Trebr_2127 2515119 2516057 - hypothetical protein KEGG: bmv:BMASAVP1_0977 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921048 gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2127 Trebr_2128 Trebr_2128 Trebr_2128 2516284 2516508 + Uncharacterized conserved protein UCP037246 COGs: COG4443 conserved hypothetical protein~InterPro IPR017154~KEGG: tde:TDE2571 hypothetical protein~PFAM: Uncharacterised conserved protein UCP037246~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921049~PFAM: Uncharacterized protein conserved in bacteria (DUF2128) gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2128 Trebr_2129 Trebr_2129 Trebr_2129 2516503 2517549 - DNA polymerase III%2C delta subunit COGs: COG1466 DNA polymerase III delta subunit~InterPro IPR005790:IPR010372~KEGG: tde:TDE0729 hypothetical protein~PFAM: DNA polymerase III%2C delta~SPTR: Putative uncharacterized protein%3B~TIGRFAM: DNA polymerase III%2C delta subunit~IMG reference gene:2504921050~PFAM: DNA polymerase III%2C delta subunit~TIGRFAM: DNA polymerase III%2C delta subunit gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2129 Trebr_2130 Trebr_2130 Trebr_2130 2517546 2518160 - SOS-response transcriptional repressor%2C LexA COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase)~HAMAP: LexA repressor~InterPro IPR006200:IPR006199:IPR019759~KEGG: ssm:Spirs_4055 transcriptional repressor%2C LexA family~PFAM: Peptidase S24/S26A/S26B%2C conserved region%3B LexA DNA-binding region~SPTR: LexA repressor%3B~TIGRFAM: Peptidase S24%2C LexA repressor~IMG reference gene:2504921051~PFAM: LexA DNA binding domain%3B Peptidase S24-like~TIGRFAM: SOS regulatory protein LexA gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2130 Trebr_2131 Trebr_2131 Trebr_2131 2518167 2518433 - Phosphotransferase system%2C phosphocarrier protein HPr COGs: COG1925 Phosphotransferase system HPr-related protein~InterPro IPR005698~KEGG: ssm:Spirs_4051 phosphotransferase system%2C phosphocarrier protein HPr~PFAM: Phosphotransferase system%2C phosphocarrier HPr protein~SPTR: Phosphotransferase system%2C phosphocarrier protein HPr%3B~TIGRFAM: Phosphotransferase system%2C phosphocarrier HPr protein~IMG reference gene:2504921052~PFAM: PTS HPr component phosphorylation site~TIGRFAM: Phosphotransferase System HPr (HPr) Family gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2131 Trebr_2132 Trebr_2132 Trebr_2132 2518501 2519646 - HPr kinase COGs: COG1493 Serine kinase of the HPr protein regulates carbohydrate metabolism~HAMAP: HPr kinase/phosphorylase~InterPro IPR003755:IPR011126:IPR011104~KEGG: ssm:Spirs_4050 HPr kinase~PFAM: Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase%2C C-terminal%3B Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase%2C N-terminal~SPTR: HPr kinase/phosphorylase%3B~TIGRFAM: Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase~IMG reference gene:2504921053~PFAM: HPr Serine kinase N terminus%3B HPr Serine kinase C-terminal domain~TIGRFAM: Hpr(Ser) kinase/phosphatase gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2132 Trebr_2133 Trebr_2133 Trebr_2133 2519679 2519969 - ribosomal subunit interface protein%2C putative KEGG: tde:TDE1296 ribosomal subunit interface protein%2C putative~SPTR: Ribosomal subunit interface protein%2C putative%3B~IMG reference gene:2504921054~PFAM: Sigma 54 modulation protein / S30EA ribosomal protein~TIGRFAM: ribosomal subunit interface protein gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2133 Trebr_2134 Trebr_2134 Trebr_2134 2520259 2521023 + pseudouridine synthase COGs: COG0564 Pseudouridylate synthase 23S RNA-specific~InterPro IPR006145~KEGG: tde:TDE2576 RNA pseudouridylate synthase family protein~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~SPTR: Ribosomal large subunit pseudouridine synthase D%3B~IMG reference gene:2504921055~PFAM: RNA pseudouridylate synthase~TIGRFAM: pseudouridine synthase%2C RluA family gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2134 Trebr_2135 Trebr_2135 Trebr_2135 2521151 2522434 - protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR000644:IPR002550:IPR005170~KEGG: aar:Acear_0620 protein of unknown function DUF21~PFAM: Protein of unknown function DUF21%3B Cystathionine beta-synthase%2C core%3B Transporter-associated region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921056~PFAM: CBS domain%3B Domain of unknown function DUF21%3B Transporter associated domain gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2135 Trebr_2136 Trebr_2136 Trebr_2136 2522431 2523735 - protein of unknown function DUF21 COGs: COG1253 Hemolysins and related protein containing CBS domains~InterPro IPR002550:IPR000644:IPR005170~KEGG: tde:TDE0321 CBS domain-containing protein~PFAM: Protein of unknown function DUF21%3B Cystathionine beta-synthase%2C core%3B Transporter-associated region~SPTR: CBS domain protein%3B~IMG reference gene:2504921057~PFAM: CBS domain%3B Domain of unknown function DUF21%3B Transporter associated domain gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2136 Trebr_2137 Trebr_2137 Trebr_2137 2523736 2524728 - hypothetical protein KEGG: tde:TDE0117 putative lipoprotein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504921058 gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2137 Trebr_2138 Trebr_2138 Trebr_2138 2524790 2529022 - phosphoribosylformylglycinamidine synthase COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain~InterPro IPR010141:IPR010918~KEGG: cth:Cthe_0554 phosphoribosylformylglycinamidine synthase~PFAM: AIR synthase related protein%2C C-terminal~PRIAM: Phosphoribosylformylglycinamidine synthase~SPTR: Phosphoribosylformylglycinamidine synthase%3B~TIGRFAM: Phosphoribosylformylglycinamidine synthase%2C FGAM~IMG reference gene:2504921059~PFAM: AIR synthase related protein%2C N-terminal domain%3B AIR synthase related protein%2C C-terminal domain~TIGRFAM: phosphoribosylformylglycinamidine synthase%2C clade II gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2138 Trebr_2139 Trebr_2139 Trebr_2139 2529263 2529679 - Class I peptide chain release factor COGs: COG1186 Protein chain release factor B~InterPro IPR000352~KEGG: sfu:Sfum_2311 class I peptide chain release factor~PFAM: Class I peptide chain release factor~SPTR: Class I peptide chain release factor%3B~IMG reference gene:2504921060~PFAM: RF-1 domain gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2139 Trebr_2140 Trebr_2140 Trebr_2140 2529806 2530567 + hypothetical protein KEGG: tde:TDE1699 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921061 gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2140 Trebr_2141 Trebr_2141 Trebr_2141 2530564 2531421 + metallophosphoesterase COGs: COG1409 phosphohydrolase~InterPro IPR004843~KEGG: tde:TDE1698 serine/threonine protein phosphatase family protein~PFAM: Metallophosphoesterase~SPTR: Serine/threonine protein phosphatase family protein%3B~IMG reference gene:2504921062~PFAM: Calcineurin-like phosphoesterase gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2141 Trebr_2142 Trebr_2142 Trebr_2142 2531662 2532147 + transcriptional regulator%2C AsnC family COGs: COG1522 Transcriptional regulators~InterPro IPR019888:IPR019887~KEGG: cth:Cthe_0362 AsnC family transcriptional regulator~PFAM: Transcription regulator%2C AsnC-type%2C C-terminal~SMART: Transcription regulator%2C AsnC-type~SPTR: Transcriptional regulator%2C AsnC family%3B~IMG reference gene:2504921063~PFAM: AsnC family gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2142 Trebr_2143 Trebr_2143 Trebr_2143 2532147 2533316 + Aspartate transaminase COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase~InterPro IPR004839~KEGG: bcl:ABC2913 hypothetical protein~PFAM: Aminotransferase%2C class I/II~PRIAM: Aspartate transaminase~SPTR: Aspartate aminotransferase%3B~IMG reference gene:2504921064~PFAM: Aminotransferase class I and II gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2143 Trebr_2144 Trebr_2144 Trebr_2144 2533458 2535578 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR003660~KEGG: tde:TDE2549 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504921065~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2144 Trebr_2145 Trebr_2145 Trebr_2145 2535649 2537934 + ABC transporter related protein COGs: COG1122 ABC-type cobalt transport system ATPase component~InterPro IPR003593:IPR003439:IPR003339~KEGG: bll:BLJ_1432 fused ATP-binding protein and permease of ABC transporter~PFAM: ABC transporter-like%3B Cobalt transport protein~SMART: ATPase%2C AAA+ type%2C core~SPTR: Putative ABC transporter ATP-binding protein%3B~IMG reference gene:2504921066~PFAM: ABC transporter%3B Cobalt transport protein gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2145 Trebr_2146 Trebr_2146 Trebr_2146 2537952 2538569 + NUDIX hydrolase COGs: COG1051 ADP-ribose pyrophosphatase~InterPro IPR000086~KEGG: geo:Geob_0568 NUDIX hydrolase~PFAM: NUDIX hydrolase domain~SPTR: NUDIX hydrolase%3B~IMG reference gene:2504921067~PFAM: NUDIX domain gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2146 Trebr_2147 Trebr_2147 Trebr_2147 2538578 2539630 + Na+/Ca+ antiporter%2C CaCA family COGs: COG0530 Ca2+/Na+ antiporter~InterPro IPR004837:IPR004481~KEGG: lbf:LBF_0668 Ca2+/Na+ antiporter~PFAM: Sodium/calcium exchanger membrane region~SPTR: Putative cation exchanger%3B putative membrane protein%3B~TIGRFAM: K+-dependent Na+/Ca+ exchanger-like~IMG reference gene:2504921068~PFAM: Sodium/calcium exchanger protein~TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2147 Trebr_2148 Trebr_2148 Trebr_2148 2539688 2541196 + hypothetical protein KEGG: tde:TDE2285 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921069 gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2148 Trebr_2149 Trebr_2149 Trebr_2149 2541196 2542341 + efflux transporter%2C RND family%2C MFP subunit COGs: COG0845 Membrane-fusion protein~InterPro IPR006143~KEGG: tpp:TPASS_0965 possible membrane fusion protein~PFAM: Secretion protein HlyD~SPTR: Efflux transporter%2C RND family%2C MFP subunit%3B~TIGRFAM: Secretion protein HlyD~IMG reference gene:2504921070~PFAM: HlyD family secretion protein gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2149 Trebr_2150 Trebr_2150 Trebr_2150 2542365 2543078 + Phosphonate-transporting ATPase COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: tde:TDE0535 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504921071~PFAM: ABC transporter gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2150 Trebr_2151 Trebr_2151 Trebr_2151 2543071 2544261 + protein of unknown function DUF214 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component~InterPro IPR003838~KEGG: sta:STHERM_c10100 hypothetical protein~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921072~PFAM: Predicted permease gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2151 Trebr_2152 Trebr_2152 Trebr_2152 2544350 2545561 - reductase COGs: COG3007 Uncharacterized paraquat-inducible protein B~HAMAP: Uncharacterised protein family%2C TER reductase~InterPro IPR010758~KEGG: fsu:Fisuc_0738 trans-2-enoyl-CoA reductase~PFAM: Uncharacterised protein family%2C TER reductase~PRIAM: Trans-2-enoyl-CoA reductase (NAD(+))~SPTR: Putative reductase FSU_1176/Fisuc_0738%3B~IMG reference gene:2504921073~PFAM: Trans-2-enoyl-CoA reductase catalytic region%3B NAD(P)H binding domain of trans-2-enoyl-CoA reductase%3B Enoyl reductase FAD binding domain gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2152 Trebr_2153 Trebr_2153 Trebr_2153 2545601 2546860 - 3-oxoacyl-(acyl-carrier-protein) synthase 2 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase~InterPro IPR014030:IPR014031:IPR017568~KEGG: tde:TDE0038 3-oxoacyl-(acyl-carrier-protein) synthase II~PFAM: Beta-ketoacyl synthase%2C N-terminal%3B Beta-ketoacyl synthase%2C C-terminal~PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II~SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 2%3B~TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2~IMG reference gene:2504921074~PFAM: Beta-ketoacyl synthase%2C N-terminal domain%3B Beta-ketoacyl synthase%2C C-terminal domain~TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2153 Trebr_2154 Trebr_2154 Trebr_2154 2547066 2548757 - Butyrate--CoA ligase COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase~InterPro IPR000873~KEGG: fsu:Fisuc_3031 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase~PRIAM: Butyrate--CoA ligase~SPTR: AMP-dependent synthetase and ligase%3B~IMG reference gene:2504921075~PFAM: AMP-binding enzyme gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2154 Trebr_2155 Trebr_2155 Trebr_2155 2549049 2549360 + thioredoxin COGs: COG3118 Thioredoxin domain-containing protein~InterPro IPR013766:IPR005746~KEGG: thioredoxin~PFAM: Thioredoxin domain~SPTR: Thioredoxin%3B~TIGRFAM: Thioredoxin~IMG reference gene:2504921076~PFAM: Thioredoxin~TIGRFAM: thioredoxin gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2155 Trebr_2156 Trebr_2156 Trebr_2156 2549570 2550094 + flagellar hook capping protein InterPro IPR005648~KEGG: eel:EUBELI_01249 polysaccharide lyase family 1 modular protein with two candidate pectate lyase domains~PFAM: Flagellar hook capping protein~SPTR: Polysaccharide Lyase Family 1 modular protein with two candidate pectate lyase domains%3B~IMG reference gene:2504921077 gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2156 Trebr_2157 Trebr_2157 Trebr_2157 2550262 2553228 + Pectate disaccharide-lyase InterPro IPR003961:IPR006626~KEGG: cpy:Cphy_3869 fibronectin type III domain-containing protein~PFAM: Fibronectin%2C type III~PRIAM: Pectate disaccharide-lyase~SMART: Fibronectin%2C type III%3B Parallel beta-helix repeat~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921078~PFAM: Fibronectin type III domain gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2157 Trebr_2158 Trebr_2158 Trebr_2158 2553458 2554015 + hypothetical protein KEGG: rba:RB5302 signal peptide~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921079 gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2158 Trebr_2159 Trebr_2159 Trebr_2159 2554375 2555131 + pseudogene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2159 Trebr_2160 Trebr_2160 Trebr_2160 2555407 2557191 + HI0933 family protein COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase~InterPro IPR004792~KEGG: ppn:Palpr_0173 monooxygenase fad-binding protein~PFAM: HI0933-like protein~SPTR: Monooxygenase FAD-binding protein%3B~IMG reference gene:2504921081~PFAM: FAD binding domain gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2160 Trebr_2161 Trebr_2161 Trebr_2161 2557278 2558654 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: aoe:Clos_0947 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504921082~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2161 Trebr_2162 Trebr_2162 Trebr_2162 2558797 2559714 - protein of unknown function DUF6 transmembrane InterPro IPR000620~KEGG: csh:Closa_1874 protein of unknown function DUF6 transmembrane~PFAM: Protein of unknown function DUF6%2C transmembrane~SPTR: Predicted permease%2C DMT superfamily%3B~IMG reference gene:2504921083~PFAM: EamA-like transporter family gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2162 Trebr_2163 Trebr_2163 Trebr_2163 2559928 2560578 - protein of unknown function DUF1121 InterPro IPR009501~KEGG: cbe:Cbei_2882 hypothetical protein~PFAM: Protein of unknown function DUF1121~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921084~PFAM: Uncharacterised ACR%2C YkgG family COG1556 gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2163 Trebr_2164 Trebr_2164 Trebr_2164 2560771 2561757 + TRAP dicarboxylate transporter%2C DctP subunit COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component~InterPro IPR018389:IPR004682~KEGG: fnu:FN1472 N-acetylneuraminate-binding protein~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~SPTR: N-acetylneuraminate-binding protein%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~IMG reference gene:2504921085~PFAM: Bacterial extracellular solute-binding protein%2C family 7~TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor%2C DctP family gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2164 Trebr_2165 Trebr_2165 Trebr_2165 2561863 2562336 + Tripartite ATP-independent periplasmic transporter DctQ component COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component~InterPro IPR007387~KEGG: vvy:VVA1201 TRAP-type C4-dicarboxylate transport system%2C small permease component~PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~SPTR: Trap-type c4-dicarboxylate transport system%2C small permease component%3B~IMG reference gene:2504921086~PFAM: Tripartite ATP-independent periplasmic transporters%2C DctQ component gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2165 Trebr_2166 Trebr_2166 Trebr_2166 2562333 2563616 + TRAP dicarboxylate transporter%2C DctM subunit COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component~InterPro IPR010656:IPR004681~KEGG: vvy:VVA1200 TRAP-type C4-dicarboxylate transport system%2C large permease component~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~SPTR: TRAP-type C4-dicarboxylate transport system%2C large permease component%3B~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~IMG reference gene:2504921087~PFAM: DctM-like transporters~TIGRFAM: TRAP transporter%2C DctM subunit gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2166 Trebr_2167 Trebr_2167 Trebr_2167 2563695 2564144 + Conserved hypothetical protein CHP00022 COGs: COG2731 Beta-galactosidase beta subunit~InterPro IPR004375~KEGG: pmr:PMI2975 hypothetical protein~PFAM: Conserved hypothetical protein CHP00022~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP00022~IMG reference gene:2504921088~PFAM: Domain of unknown function (DUF386)~TIGRFAM: uncharacterized protein%2C YhcH/YjgK/YiaL family gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2167 Trebr_2168 Trebr_2168 Trebr_2168 2564146 2564961 - TatD-related deoxyribonuclease COGs: COG0084 Mg-dependent DNase~InterPro IPR001130~KEGG: cac:CA_C1397 hydrolase of PHP superfamily~PFAM: Deoxyribonuclease%2C TatD-related~SPTR: Predicted hydrolase of PHP superfamily%3B~IMG reference gene:2504921089~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2168 Trebr_2169 Trebr_2169 Trebr_2169 2565190 2566227 + ABC transporter related protein COGs: COG4586 ABC-type uncharacterized transport system ATPase component~InterPro IPR003593:IPR003439~KEGG: cpr:CPR_0172 ABC transporter ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter ATP-binding protein%3B~IMG reference gene:2504921090~PFAM: ABC transporter gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2169 Trebr_2170 Trebr_2170 Trebr_2170 2566224 2567075 + protein of unknown function DUF990 COGs: COG4587 ABC-type uncharacterized transport system permease component~InterPro IPR010390~KEGG: cpr:CPR_0171 ABC transporter permease~PFAM: Protein of unknown function DUF990~SPTR: Putative uncharacterized protein CPE0181%3B~IMG reference gene:2504921091~PFAM: Protein of unknown function (DUF990) gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2170 Trebr_2171 Trebr_2171 Trebr_2171 2567263 2568060 + protein of unknown function DUF990 COGs: COG3694 ABC-type uncharacterized transport system permease component~InterPro IPR010390~KEGG: cpe:CPE0180 hypothetical protein~PFAM: Protein of unknown function DUF990~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921092~PFAM: Protein of unknown function (DUF990) gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2171 Trebr_2172 Trebr_2172 Trebr_2172 2568202 2568459 - hypothetical protein IMG reference gene:2504921093 gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2172 Trebr_2173 Trebr_2173 Trebr_2173 2577243 2577530 - CRISPR-associated protein Cas2 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR003799~KEGG: sat:SYN_02472 putative cytoplasmic protein~SPTR: Hypothetical cytosolic protein%3B~TIGRFAM: Protein of unknown function DUF196~IMG reference gene:2504921094~PFAM: CRISPR associated protein Cas2~TIGRFAM: CRISPR-associated endoribonuclease Cas2 gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2173 Trebr_2174 Trebr_2174 Trebr_2174 2577535 2578566 - CRISPR-associated protein Cas1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR002729:IPR019856~KEGG: dma:DMR_14400 hypothetical protein~PFAM: CRISPR-associated protein Cas1~SPTR: Putative uncharacterized protein%3B~TIGRFAM: CRISPR-associated protein Cas1%2C DVULG subtype%3B CRISPR-associated protein Cas1~IMG reference gene:2504921095~PFAM: CRISPR associated protein Cas1~TIGRFAM: CRISPR-associated endonuclease Cas1%2C subtype I-C/DVULG%3B CRISPR-associated endonuclease Cas1 gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2174 Trebr_2175 Trebr_2175 Trebr_2175 2578563 2579207 - CRISPR-associated protein Cas4 COGs: COG1468 RecB family exonuclease~InterPro IPR013343~KEGG: sat:SYN_02474 exonuclease N~PFAM: CRISPR-associated protein Cas4~SPTR: RecB family exonuclease N%3B~TIGRFAM: CRISPR-associated protein Cas4~IMG reference gene:2504921096~PFAM: Domain of unknown function DUF83~TIGRFAM: CRISPR-associated protein Cas4 gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2175 Trebr_2176 Trebr_2176 Trebr_2176 2579211 2580053 - CRISPR-associated protein%2C Csd2 family COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair~InterPro IPR006482:IPR013418~KEGG: dae:Dtox_3648 CRISPR-associated protein%2C Csd2 family~PFAM: CRISPR-associated protein TM1801~SPTR: CRISPR-associated protein TM1801%3B~TIGRFAM: CRISPR-associated protein Csd2%3B CRISPR-associated protein TM1801~IMG reference gene:2504921097~PFAM: Family of unknown function (DUF694)~TIGRFAM: CRISPR-associated protein%2C CT1132 family%3B CRISPR-associated protein Cas7/Csd2%2C subtype I-C/DVULG gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2176 Trebr_2177 Trebr_2177 Trebr_2177 2580055 2581899 - CRISPR-associated protein%2C Csd1 family InterPro IPR010144~KEGG: rrs:RoseRS_4333 CRISPR-associated RAMP Csd1 family protein~PFAM: CRISPR-associated protein%2C Csd1-type~SPTR: CRISPR-associated protein%2C Csd1 family%3B~TIGRFAM: CRISPR-associated protein%2C Csd1-type~IMG reference gene:2504921098~PFAM: CRISPR-associated protein (Cas_Csd1)~TIGRFAM: CRISPR-associated protein Cas8c/Csd1%2C subtype I-C/DVULG gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2177 Trebr_2178 Trebr_2178 Trebr_2178 2581896 2582579 - CRISPR-associated protein Cas5 family InterPro IPR010155:IPR013422~KEGG: dae:Dtox_3650 CRISPR-associated protein Cas5 family~PFAM: CRISPR-associated protein%2C Cas5d-type~SPTR: CRISPR-associated protein Cas5 family%3B~TIGRFAM: CRISPR-associated protein%2C Cas5d-type%3B CRISPR-associated protein Cas5~IMG reference gene:2504921099~PFAM: CRISPR-associated protein (Cas_Cas5)~TIGRFAM: CRISPR-associated protein Cas5%2C subtype I-C/DVULG%3B CRISPR-associated protein Cas5%2C N-terminal domain gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2178 Trebr_2179 Trebr_2179 Trebr_2179 2582607 2585069 - CRISPR-associated HD domain protein COGs: COG1203 helicase~InterPro IPR014001:IPR006483~KEGG: eba:ebA3291 putative CRISPR-associated helicase~SMART: DEAD-like helicase%2C N-terminal~SPTR: Predicted CRISPR-associated helicase%3B~TIGRFAM: CRISPR-associated HD domain~IMG reference gene:2504921100~PFAM: HD domain%3B DEAD/DEAH box helicase~TIGRFAM: CRISPR-associated helicase Cas3%3B CRISPR-associated endonuclease Cas3-HD gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2179 Trebr_2180 Trebr_2180 Trebr_2180 2590050 2590463 + pseudogene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2180 Trebr_2181 Trebr_2181 Trebr_2181 2590635 2591174 - NADPH-dependent FMN reductase COGs: COG0655 Multimeric flavodoxin WrbA~InterPro IPR005025~KEGG: ere:EUBREC_0646 hypothetical protein~PFAM: NADPH-dependent FMN reductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921102~PFAM: NADPH-dependent FMN reductase gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2181 Trebr_2182 Trebr_2182 Trebr_2182 2591947 2592264 + pseudogene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2182 Trebr_2183 Trebr_2183 Trebr_2183 2592271 2593794 - MATE efflux family protein COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: cac:CA_C3354 cation efflux pump (multidrug resistance protein)~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Probable cation efflux pump (Multidrug resistance protein)%3B~TIGRFAM: Multi antimicrobial extrusion protein MatE~IMG reference gene:2504921104~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2183 Trebr_2184 Trebr_2184 Trebr_2184 2593810 2594211 - hypothetical protein IMG reference gene:2504921105 gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2184 Trebr_2185 Trebr_2185 Trebr_2185 2594211 2594567 - hypothetical protein IMG reference gene:2504921106~PFAM: PEGA domain gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2185 Trebr_2186 Trebr_2186 Trebr_2186 2594705 2595025 + helix-turn-helix domain protein InterPro IPR001387~KEGG: tde:TDE1170 DNA-binding protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding protein%3B~IMG reference gene:2504921107~PFAM: Helix-turn-helix gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2186 Trebr_2187 Trebr_2187 Trebr_2187 2595032 2595883 - pyrroline-5-carboxylate reductase COGs: COG0345 Pyrroline-5-carboxylate reductase~InterPro IPR004455:IPR000304~KEGG: csh:Closa_3615 pyrroline-5-carboxylate reductase~PFAM: NADP oxidoreductase%2C coenzyme F420-dependent~PRIAM: Pyrroline-5-carboxylate reductase~SPTR: Pyrroline-5-carboxylate reductase%3B~TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase~IMG reference gene:2504921108~PFAM: NADP oxidoreductase coenzyme F420-dependent~TIGRFAM: pyrroline-5-carboxylate reductase gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2187 Trebr_2188 Trebr_2188 Trebr_2188 2595880 2596680 - Glutamate 5-kinase COGs: COG0263 Glutamate 5-kinase~HAMAP: Glutamate 5-kinase~InterPro IPR001048:IPR005715~KEGG: amt:Amet_3645 glutamate 5-kinase~PFAM: Aspartate/glutamate/uridylate kinase~SPTR: Glutamate 5-kinase%3B~TIGRFAM: Glutamate 5-kinase%2C ProB-related~IMG reference gene:2504921109~PFAM: Amino acid kinase family~TIGRFAM: glutamate 5-kinase gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2188 Trebr_2189 Trebr_2189 Trebr_2189 2596677 2597942 - Gamma-glutamyl phosphate reductase COGs: COG0014 Gamma-glutamyl phosphate reductase~HAMAP: Glutamate-5-semialdehyde dehydrogenase~InterPro IPR012134:IPR000965~KEGG: tpp:TPASS_0350 gamma-glutamyl phosphate reductase~PRIAM: Glutamate-5-semialdehyde dehydrogenase~SPTR: Gamma-glutamyl phosphate reductase%3B~TIGRFAM: Gamma-glutamyl phosphate reductase GPR~IMG reference gene:2504921110~PFAM: Aldehyde dehydrogenase family~TIGRFAM: gamma-glutamyl phosphate reductase gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2189 Trebr_2190 Trebr_2190 Trebr_2190 2597966 2598535 - hypothetical protein KEGG: tde:TDE0022 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921111 gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2190 Trebr_2191 Trebr_2191 Trebr_2191 2598743 2599306 + Peptide deformylase COGs: COG0242 N-formylmethionyl-tRNA deformylase~HAMAP: Formylmethionine deformylase~InterPro IPR000181~KEGG: ssm:Spirs_1654 peptide deformylase~PFAM: Formylmethionine deformylase~SPTR: Peptide deformylase%3B~TIGRFAM: Formylmethionine deformylase~IMG reference gene:2504921112~PFAM: Polypeptide deformylase~TIGRFAM: peptide deformylase gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2191 Trebr_2192 Trebr_2192 Trebr_2192 2599303 2600316 + Methionyl-tRNA formyltransferase COGs: COG0223 Methionyl-tRNA formyltransferase~HAMAP: Methionyl-tRNA formyltransferase~InterPro IPR005794:IPR002376:IPR005793~KEGG: sta:STHERM_c20370 methionyl-tRNA formyltransferase~PFAM: Formyl transferase%2C C-terminal%3B Formyl transferase%2C N-terminal~PRIAM: Methionyl-tRNA formyltransferase~SPTR: Methionyl-tRNA formyltransferase%3B~TIGRFAM: Methionyl-tRNA formyltransferase~IMG reference gene:2504921113~PFAM: Formyl transferase%3B Formyl transferase%2C C-terminal domain~TIGRFAM: methionyl-tRNA formyltransferase gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2192 Trebr_2193 Trebr_2193 Trebr_2193 2600320 2601342 + PASTA domain containing protein COGs: COG2815 conserved hypothetical protein~InterPro IPR005543~KEGG: tde:TDE1643 PASTA domain-containing protein~PFAM: PASTA~SMART: PASTA~SPTR: PASTA domain protein%3B~IMG reference gene:2504921114~PFAM: PASTA domain gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2193 Trebr_2194 Trebr_2194 Trebr_2194 2601480 2603096 - Na+/H+ antiporter NhaC COGs: COG1757 Na+/H+ antiporter~InterPro IPR018461~KEGG: bhy:BHWA1_01860 Na+/H+ antiporter~PFAM: Na+/H+ antiporter NhaC-like~SPTR: Na+/H+ antiporter NhaC%3B~IMG reference gene:2504921115~PFAM: Na+/H+ antiporter family gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2194 Trebr_2195 Trebr_2195 Trebr_2195 2603221 2605047 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR004089:IPR003660~KEGG: ssm:Spirs_3480 methyl-accepting chemotaxis sensory transducer with cache sensor~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling~SPTR: Methyl-accepting chemotaxis sensory transducer with Cache sensor%3B~IMG reference gene:2504921116~PFAM: HAMP domain%3B Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2195 Trebr_2196 Trebr_2196 Trebr_2196 2605192 2606697 + 3-dehydroquinate dehydratase COGs: COG0169 Shikimate 5-dehydrogenase~HAMAP: Dehydroquinase class I~InterPro IPR001381:IPR013708:IPR006151~KEGG: tde:TDE1640 3-dehydroquinate dehydratase%2C type 1%2C putative/shikimate 5-dehydrogenase%2C putative~PFAM: Shikimate dehydrogenase substrate binding%2C N-terminal%3B Dehydroquinase class I%3B Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase~SPTR: Putative 3-dehydroquinate dehydratase%2C type 1/shikimate 5-dehydrogenase%3B~IMG reference gene:2504921117~PFAM: Shikimate dehydrogenase substrate binding domain%3B Type I 3-dehydroquinase%3B Shikimate / quinate 5-dehydrogenase~TIGRFAM: shikimate 5-dehydrogenase%3B 3-dehydroquinate dehydratase%2C type I gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2196 Trebr_2197 Trebr_2197 Trebr_2197 2606697 2607425 + Ribose-5-phosphate isomerase A COGs: COG0120 Ribose 5-phosphate isomerase~HAMAP: Ribose-5-phosphate isomerase%2C subgroup~InterPro IPR020672:IPR004788~KEGG: tde:TDE1641 ribose-5-phosphate isomerase A~PFAM: Ribose 5-phosphate isomerase~PRIAM: Ribose-5-phosphate isomerase~SPTR: Ribose-5-phosphate isomerase A%3B~TIGRFAM: Ribose 5-phosphate isomerase~IMG reference gene:2504921118~PFAM: Ribose 5-phosphate isomerase A (phosphoriboisomerase A)~TIGRFAM: ribose 5-phosphate isomerase gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2197 Trebr_2198 Trebr_2198 Trebr_2198 2607494 2608381 - hypothetical protein KEGG: apr:Apre_1054 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921119 gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2198 Trebr_2199 Trebr_2199 Trebr_2199 2608412 2609410 - GTP-binding protein Era-like-protein COGs: COG1159 GTPase~HAMAP: GTP-binding protein Era~InterPro IPR005662:IPR002917:IPR004044:IPR005225~KEGG: tde:TDE1895 GTP-binding protein Era~PFAM: GTP-binding protein%2C HSR1-related%3B K Homology%2C type 2~SPTR: GTPase Era%3B~TIGRFAM: GTP-binding protein Era%3B Small GTP-binding protein~IMG reference gene:2504921120~PFAM: GTPase of unknown function%3B KH domain~TIGRFAM: GTP-binding protein Era%3B small GTP-binding protein domain gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2199 Trebr_2200 Trebr_2200 Trebr_2200 2609524 2611668 + glycogen debranching enzyme GlgX COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase~InterPro IPR006589:IPR004193:IPR006047:IPR011837~KEGG: ssm:Spirs_3465 glycogen debranching enzyme GlgX~PFAM: Glycoside hydrolase%2C family 13%2C N-terminal%3B Glycosyl hydrolase%2C family 13%2C catalytic region~PRIAM: Isoamylase~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~SPTR: Glycogen debranching enzyme GlgX%3B~TIGRFAM: Glycogen debranching enzyme GlgX~manually curated~IMG reference gene:2504921121~PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain)%3B Alpha amylase%2C catalytic domain~TIGRFAM: glycogen debranching enzyme GlgX gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2200 Trebr_2201 Trebr_2201 Trebr_2201 2611794 2614241 + glycogen/starch/alpha-glucan phosphorylase COGs: COG0058 Glucan phosphorylase~InterPro IPR000811:IPR011833~KEGG: tde:TDE2411 glycogen phosphorylase~PFAM: Glycosyl transferase%2C family 35~SPTR: Phosphorylase%3B~TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase~IMG reference gene:2504921122~PFAM: Carbohydrate phosphorylase~TIGRFAM: glycogen/starch/alpha-glucan phosphorylases gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2201 Trebr_2202 Trebr_2202 Trebr_2202 2614571 2616046 - sodium/proline symporter COGs: COG0591 Na+/proline symporter~InterPro IPR001734:IPR011851:IPR019900~KEGG: mac:MA0003 sodium:proline symporter~PFAM: Sodium/solute symporter~SPTR: Sodium:proline symporter%3B~TIGRFAM: Sodium/proline symporter%3B Sodium/solute symporter%2C subgroup~IMG reference gene:2504921123~PFAM: Sodium:solute symporter family~TIGRFAM: sodium/proline symporter%3B transporter%2C SSS family gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2202 Trebr_2203 Trebr_2203 Trebr_2203 2616181 2618478 + diguanylate cyclase/phosphodiesterase COGs: COG2200 FOG: EAL domain~InterPro IPR000160:IPR001633~KEGG: cdc:CD196_2722 putative signaling protein~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~SPTR: Putative signaling protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504921124~PFAM: EAL domain%3B GGDEF domain gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2203 Trebr_2204 Trebr_2204 Trebr_2204 2618539 2619585 - GCN5-related N-acetyltransferase COGs: COG3393 acetyltransferase~InterPro IPR000182~KEGG: tde:TDE0023 acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: Acetyltransferase%2C gnat family%3B~IMG reference gene:2504921125~PFAM: FR47-like protein gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2204 Trebr_2205 Trebr_2205 Trebr_2205 2619598 2621376 - glycoside hydrolase family 3 domain protein COGs: COG1472 Beta-glucosidase-related glycosidase~InterPro IPR001764~KEGG: tde:TDE0024 glycosy hydrolase family protein~PFAM: Glycoside hydrolase%2C family 3%2C N-terminal~SPTR: Glycosyl hydrolase%2C family 3%3B~IMG reference gene:2504921126~PFAM: Glycosyl hydrolase family 3 N terminal domain gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2205 Trebr_2206 Trebr_2206 Trebr_2206 2621377 2622315 - thioredoxin reductase COGs: COG0492 Thioredoxin reductase~InterPro IPR013027:IPR005982~KEGG: tpp:TPASS_0814 thioredoxin reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PRIAM: Thioredoxin-disulfide reductase~SPTR: Thioredoxin reductase%3B~TIGRFAM: Thioredoxin reductase~IMG reference gene:2504921127~PFAM: Pyridine nucleotide-disulphide oxidoreductase~TIGRFAM: thioredoxin-disulfide reductase gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2206 Trebr_2207 Trebr_2207 Trebr_2207 2622801 2624528 - pseudogene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2207 Trebr_2208 Trebr_2208 Trebr_2208 2624679 2625200 - hypothetical protein IMG reference gene:2504921130 gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2208 Trebr_2209 Trebr_2209 Trebr_2209 2625273 2625695 - protein tyrosine phosphatase COGs: COG0394 Protein-tyrosine-phosphatase~InterPro IPR017867~KEGG: csh:Closa_3568 protein-tyrosine phosphatase%2C low molecular weight~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight~SPTR: Protein tyrosine phosphatase%3B~IMG reference gene:2504921131~PFAM: Low molecular weight phosphotyrosine protein phosphatase gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2209 Trebr_2210 Trebr_2210 Trebr_2210 2625703 2626056 - redox-active disulfide protein 2 InterPro IPR005243~KEGG: redox-active disulfide protein 2~SPTR: Redox-active disulfide protein 2%3B~TIGRFAM: Redox-active disulphide protein 2~IMG reference gene:2504921132~TIGRFAM: small redox-active disulfide protein 2 gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2210 Trebr_2211 Trebr_2211 Trebr_2211 2626070 2626513 - C_GCAxxG_C_C family protein InterPro IPR010181~KEGG: mla:Mlab_0460 hypothetical protein~PFAM: CGCAxxGCC motif~SPTR: C_GCAxxG_C_C family protein%3B~TIGRFAM: CGCAxxGCC motif~IMG reference gene:2504921133~PFAM: Putative redox-active protein (C_GCAxxG_C_C)~TIGRFAM: C_GCAxxG_C_C family probable redox protein gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2211 Trebr_2212 Trebr_2212 Trebr_2212 2626531 2627544 - Protein of unknown function DUF318%2C transmembrane COGs: COG0701 permease~InterPro IPR005524~KEGG: blj:BLD_1092 hypothetical permease~PFAM: Protein of unknown function DUF318%2C transmembrane~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921134~PFAM: Predicted permease gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2212 Trebr_2213 Trebr_2213 Trebr_2213 2627627 2627941 - transcriptional regulator%2C ArsR family COGs: COG0640 transcriptional regulator protein~InterPro IPR001845~KEGG: cce:Ccel_1065 transcriptional regulator%2C ArsR family~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921135~PFAM: Bacterial regulatory protein%2C arsR family gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2213 Trebr_2214 Trebr_2214 Trebr_2214 2628218 2629321 + alpha/beta hydrolase fold protein COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily)~InterPro IPR000073~KEGG: str:Sterm_0501 alpha/beta hydrolase fold protein~PFAM: Alpha/beta hydrolase fold-1~SPTR: Alpha/beta hydrolase fold protein%3B~IMG reference gene:2504921136~PFAM: Prolyl oligopeptidase family gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2214 Trebr_2215 Trebr_2215 Trebr_2215 2629770 2630450 + Redox-sensing transcriptional repressor rex COGs: COG2344 AT-rich DNA-binding protein~HAMAP: Redox-sensing transcriptional repressor rex~InterPro IPR003781~KEGG: sta:STHERM_c01510 redox-sensing transcriptional repressor rex~PFAM: CoA-binding~SPTR: Redox-sensing transcriptional repressor rex%3B~IMG reference gene:2504921137~PFAM: CoA binding domain gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2215 Trebr_2216 Trebr_2216 Trebr_2216 2630515 2631627 + Phosphoserine aminotransferase COGs: COG1932 Phosphoserine aminotransferase~HAMAP: Phosphoserine aminotransferase~InterPro IPR000192:IPR003248~KEGG: cbe:Cbei_0075 phosphoserine aminotransferase~PFAM: Aminotransferase%2C class V/Cysteine desulfurase~PRIAM: Phosphoserine transaminase~SPTR: Phosphoserine aminotransferase%3B~TIGRFAM: Phosphoserine aminotransferase~IMG reference gene:2504921138~PFAM: Aminotransferase class-V~TIGRFAM: phosphoserine aminotransferase gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2216 Trebr_2217 Trebr_2217 Trebr_2217 2631808 2632986 + Phosphoglycerate dehydrogenase COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase~InterPro IPR006139:IPR006140~KEGG: cth:Cthe_3035 D-3-phosphoglycerate dehydrogenase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic region~PRIAM: Phosphoglycerate dehydrogenase~SPTR: D-3-phosphoglycerate dehydrogenase%3B~IMG reference gene:2504921139~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2217 Trebr_2218 Trebr_2218 Trebr_2218 2633176 2633997 + Lytic transglycosylase catalytic InterPro IPR008258~KEGG: ssm:Spirs_0274 lytic transglycosylase catalytic~PFAM: Lytic transglycosylase-like%2C catalytic~SPTR: Lytic transglycosylase catalytic%3B~IMG reference gene:2504921140~PFAM: Transglycosylase SLT domain gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2218 Trebr_2219 Trebr_2219 Trebr_2219 2634012 2635676 - hypothetical protein KEGG: sta:STHERM_c19870 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921141 gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2219 Trebr_2220 Trebr_2220 Trebr_2220 2635801 2636247 - putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~InterPro IPR002178~KEGG: tpp:TPASS_0085 PTS system%2C nitrogen regulatory IIA component~PFAM: Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~SPTR: PTS system%2C IIA component%3B~IMG reference gene:2504921142~PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2220 Trebr_2221 Trebr_2221 Trebr_2221 2636348 2636752 + hypothetical protein KEGG: tde:TDE2505 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921143 gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2221 Trebr_2222 Trebr_2222 Trebr_2222 2636753 2637781 + Radical SAM domain protein COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein~InterPro IPR007197~KEGG: tde:TDE2506 radical SAM domain-containing protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504921144~PFAM: Radical SAM superfamily gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2222 Trebr_2223 Trebr_2223 Trebr_2223 2637860 2638840 + hypothetical protein KEGG: ssm:Spirs_0126 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921145 gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2223 Trebr_2224 Trebr_2224 Trebr_2224 2639376 2640215 + Conserved hypothetical protein CHP01784 InterPro IPR010106~KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Conserved hypothetical protein CHP01784~IMG reference gene:2504921146~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2224 Trebr_2225 Trebr_2225 Trebr_2225 2640300 2641277 - GDP-L-fucose synthase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR001509~KEGG: ssm:Spirs_4268 NAD-dependent epimerase/dehydratase~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: GDP-L-fucose synthase~SPTR: NAD-dependent epimerase/dehydratase%3B~IMG reference gene:2504921147~PFAM: NAD dependent epimerase/dehydratase family gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2225 Trebr_2226 Trebr_2226 Trebr_2226 2641394 2642467 - GDP-mannose 4%2C6-dehydratase COGs: COG1089 GDP-D-mannose dehydratase~InterPro IPR001509:IPR006368~KEGG: amu:Amuc_1249 GDP-mannose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: GDP-mannose 4%2C6-dehydratase~SPTR: GDP-mannose 4%2C6-dehydratase%3B~TIGRFAM: GDP-mannose 4%2C6-dehydratase~IMG reference gene:2504921148~PFAM: NAD dependent epimerase/dehydratase family~TIGRFAM: GDP-mannose 4%2C6-dehydratase gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2226 Trebr_2227 Trebr_2227 Trebr_2227 2642624 2643706 - UDP-N-acetylglucosamine 4-epimerase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR001509~KEGG: tde:TDE1439 epimerase/dehydratase%2C putative~PFAM: NAD-dependent epimerase/dehydratase~PRIAM: UDP-N-acetylglucosamine 4-epimerase~SPTR: Epimerase/dehydratase%2C putative%3B~IMG reference gene:2504921149~PFAM: NAD dependent epimerase/dehydratase family gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2227 Trebr_2228 Trebr_2228 Trebr_2228 2643703 2644482 - glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: dfe:Dfer_0250 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase family 2%3B~IMG reference gene:2504921150~PFAM: Glycosyl transferase family 2 gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2228 Trebr_2229 Trebr_2229 Trebr_2229 2644519 2645319 - glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: dfe:Dfer_0250 glycosyl transferase family 2~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase family 2%3B~IMG reference gene:2504921151~PFAM: Glycosyl transferase family 2 gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2229 Trebr_2230 Trebr_2230 Trebr_2230 2645348 2646535 - glycosyl transferase group 1 COGs: COG0438 Glycosyltransferase~InterPro IPR001296~KEGG: bcr:BCAH187_A5441 putative glycosyltransferase~PFAM: Glycosyl transferase%2C group 1~SPTR: Putative glycosyltransferase%3B~IMG reference gene:2504921152~PFAM: Glycosyl transferases group 1 gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2230 Trebr_2231 Trebr_2231 Trebr_2231 2646540 2647256 - polysaccharide deacetylase InterPro IPR002509~KEGG: ppn:Palpr_2331 polysaccharide deacetylase~PFAM: Polysaccharide deacetylase~SPTR: Putative endo-1%2C4-beta-xylanase YjeA%3B~manually curated~IMG reference gene:2504921153~PFAM: Polysaccharide deacetylase gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2231 Trebr_2232 Trebr_2232 Trebr_2232 2647270 2647503 - pseudogene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2232 Trebr_2233 Trebr_2233 Trebr_2233 2647534 2648775 - transposase mutator type COGs: COG3328 Transposase and inactivated derivatives~InterPro IPR001207~KEGG: wch:wcw_0483 transposase~PFAM: Transposase%2C mutator type~SPTR: Transposase%3B~IMG reference gene:2504921155~PFAM: Transposase%2C Mutator family gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2233 Trebr_2234 Trebr_2234 Trebr_2234 2648879 2649310 - pseudogene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2234 Trebr_2235 Trebr_2235 Trebr_2235 2649541 2650068 - hypothetical protein KEGG: ssm:Spirs_1333 NusG antitermination factor~SPTR: NusG antitermination factor%3B~IMG reference gene:2504921157~PFAM: KOW motif gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2235 Trebr_2236 Trebr_2236 Trebr_2236 2650122 2650844 - hypothetical protein IMG reference gene:2504921158 gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2236 Trebr_2237 Trebr_2237 Trebr_2237 2650989 2651252 + helix-turn-helix domain protein InterPro IPR001387~KEGG: ssm:Spirs_2524 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504921159~PFAM: Helix-turn-helix gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2237 Trebr_2238 Trebr_2238 Trebr_2238 2651410 2653458 + 4-alpha-glucanotransferase COGs: COG1640 4-alpha-glucanotransferase~InterPro IPR003385~KEGG: fsu:Fisuc_0860 4-alpha-glucanotransferase~PFAM: Glycoside hydrolase%2C family 77~PRIAM: 4-alpha-glucanotransferase~SPTR: 4-alpha-glucanotransferase%3B~IMG reference gene:2504921160~PFAM: 4-alpha-glucanotransferase~TIGRFAM: 4-alpha-glucanotransferase gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2238 Trebr_2239 Trebr_2239 Trebr_2239 2653593 2657402 + alpha amylase catalytic region InterPro IPR006589:IPR006047~KEGG: tde:TDE2678 alpha-amylase family protein~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~SPTR: Alpha-amylase family protein%3B~IMG reference gene:2504921161~PFAM: Alpha amylase%2C catalytic domain gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2239 Trebr_2240 Trebr_2240 Trebr_2240 2657679 2658989 - threonine synthase COGs: COG0498 Threonine synthase~KEGG: tde:TDE2676 threonine synthase~SPTR: Threonine synthase%3B~IMG reference gene:2504921162~PFAM: Pyridoxal-phosphate dependent enzyme gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2240 Trebr_2241 Trebr_2241 Trebr_2241 2659037 2659954 - Uncharacterized conserved protein UCP018688 COGs: COG4866 conserved hypothetical protein~InterPro IPR016732~KEGG: ssm:Spirs_3910 uncharacterized conserved protein UCP018688~PFAM: Uncharacterised conserved protein UCP018688~SPTR: Uncharacterized conserved protein UCP018688%3B~IMG reference gene:2504921163~PFAM: Uncharacterized conserved protein (DUF2156) gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2241 Trebr_2242 Trebr_2242 Trebr_2242 2660147 2661442 + peptidase T COGs: COG2195 Di- and tripeptidase~InterPro IPR011650:IPR002933:IPR010161~KEGG: ssm:Spirs_3909 peptidase T~PFAM: Peptidase M20%2C dimerisation%3B Peptidase M20~PRIAM: Tripeptide aminopeptidase~SPTR: Peptidase T%3B~TIGRFAM: Peptidase M20B%2C tripeptide aminopeptidase~IMG reference gene:2504921164~PFAM: Peptidase family M20/M25/M40%3B Peptidase dimerisation domain~TIGRFAM: peptidase T gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2242 Trebr_2243 Trebr_2243 Trebr_2243 2661510 2661752 + hypothetical protein KEGG: elm:ELI_2159 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921165~TIGRFAM: uncharacterized protein TIGR03905 gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2243 Trebr_2244 Trebr_2244 Trebr_2244 2661745 2663040 + UDP-N-acetylglucosamine1-carboxyvinyltransferase COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase~HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~InterPro IPR001986:IPR005750~KEGG: tde:TDE0641 UDP-N-acetylglucosamine 1-carboxyvinyltransferase~PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase%2C core~PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase%3B~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~IMG reference gene:2504921166~PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2244 Trebr_2245 Trebr_2245 Trebr_2245 2663131 2663886 - heat shock protein DnaJ domain protein InterPro IPR001623~KEGG: zpr:ZPR_0128 DnaJ domain-containing protein~PFAM: Heat shock protein DnaJ%2C N-terminal~SMART: Heat shock protein DnaJ%2C N-terminal~SPTR: DnaJ domain-containing protein%3B~IMG reference gene:2504921167~PFAM: DnaJ domain gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2245 Trebr_2246 Trebr_2246 Trebr_2246 2663879 2665690 - hypothetical protein KEGG: tde:TDE0867 hypothetical protein~SPTR: Putative lipoprotein%3B~IMG reference gene:2504921168 gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2246 Trebr_2247 Trebr_2247 Trebr_2247 2665687 2666616 - hypothetical protein IMG reference gene:2504921169 gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2247 Trebr_2248 Trebr_2248 Trebr_2248 2666940 2667491 - anti-sigma-factor antagonist COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)~InterPro IPR002645:IPR003658~KEGG: ssm:Spirs_0140 anti-sigma-factor antagonist~PFAM: Sulphate transporter/antisigma-factor antagonist STAS~SPTR: Anti-sigma factor antagonist%3B~TIGRFAM: Anti-sigma factor antagonist~IMG reference gene:2504921170~PFAM: STAS domain~TIGRFAM: anti-anti-sigma factor gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2248 Trebr_2249 Trebr_2249 Trebr_2249 2667612 2668346 - short-chain dehydrogenase/reductase SDR COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase)~InterPro IPR002198~KEGG: sta:STHERM_c00440 hypothetical protein~PFAM: Short-chain dehydrogenase/reductase SDR~SPTR: 3-hydroxybutyrate dehydrogenase%3B~IMG reference gene:2504921171~PFAM: short chain dehydrogenase gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2249 Trebr_2250 Trebr_2250 Trebr_2250 2668392 2669147 + tRNA/rRNA methyltransferase (SpoU) COGs: COG0565 rRNA methylase~InterPro IPR001537~KEGG: ssm:Spirs_2304 RNA methyltransferase%2C TrmH family%2C group 1~PFAM: tRNA/rRNA methyltransferase%2C SpoU~SPTR: RNA methyltransferase%2C TrmH family%2C group 1%3B~IMG reference gene:2504921172~PFAM: SpoU rRNA Methylase family~TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 1 gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2250 Trebr_2251 Trebr_2251 Trebr_2251 2669117 2670256 - Sigma 54 interacting domain protein COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains~InterPro IPR003593:IPR002078~KEGG: dae:Dtox_0789 two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family~PFAM: RNA polymerase sigma factor 54%2C interaction~SMART: ATPase%2C AAA+ type%2C core~SPTR: Two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family%3B~IMG reference gene:2504921173~PFAM: Sigma-54 interaction domain gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2251 Trebr_2252 Trebr_2252 Trebr_2252 2670281 2671024 - glycosyl transferase WecB/TagA/CpsF COGs: COG1922 Teichoic acid biosynthesis protein~InterPro IPR004629~KEGG: tde:TDE1876 WecB/TagA/CpsF family glycosyl transferase~PFAM: Glycosyl transferase WecB/TagA/CpsF~SPTR: Glycosyl transferase%2C WecB/TagA/CpsF family%3B~IMG reference gene:2504921174~PFAM: Glycosyl transferase WecB/TagA/CpsF family gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2252 Trebr_2253 Trebr_2253 Trebr_2253 2670997 2671857 - Ribosomal RNA small subunit methyltransferase E COGs: COG1385 conserved hypothetical protein~InterPro IPR006700~KEGG: tpp:TPASS_0276 16S ribosomal RNA methyltransferase RsmE~PFAM: Ribosomal RNA small subunit methyltransferase E~SPTR: RNA methyltransferase family protein%3B~TIGRFAM: Ribosomal RNA small subunit methyltransferase E~IMG reference gene:2504921175~PFAM: RNA methyltransferase~TIGRFAM: RNA methyltransferase%2C RsmE family gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2253 Trebr_2254 Trebr_2254 Trebr_2254 2671859 2673385 - carboxyl-terminal protease COGs: COG0793 Periplasmic protease~InterPro IPR001478:IPR005151:IPR004447~KEGG: tpp:TPASS_0277 carboxyl-terminal protease~PFAM: Peptidase S41%3B PDZ/DHR/GLGF~SMART: Peptidase S41%3B PDZ/DHR/GLGF~SPTR: Carboxy--processing protease%3B~TIGRFAM: Peptidase S41A%2C C-terminal protease~IMG reference gene:2504921176~PFAM: Peptidase family S41%3B PDZ domain (Also known as DHR or GLGF)~TIGRFAM: C-terminal peptidase (prc) gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2254 Trebr_2255 Trebr_2255 Trebr_2255 2673520 2674014 + hypothetical protein IMG reference gene:2504921177 gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2255 Trebr_2256 Trebr_2256 Trebr_2256 2674005 2675132 + flagellar synthesis regulator FleN%2C putative COGs: COG0455 ATPase involved in chromosome partitioning~KEGG: tde:TDE1397 flagellar synthesis regulator FleN%2C putative~SPTR: ATP-binding protein%3B~IMG reference gene:2504921178~PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2256 Trebr_2257 Trebr_2257 Trebr_2257 2675145 2676122 + Prolipoprotein diacylglyceryl transferase COGs: COG0682 Prolipoprotein diacylglyceryltransferase~HAMAP: Prolipoprotein diacylglyceryl transferase~InterPro IPR001640~KEGG: sta:STHERM_c00350 prolipoprotein diacylglyceryl transferase~PFAM: Prolipoprotein diacylglyceryl transferase~SPTR: Prolipoprotein diacylglyceryl transferase%3B~TIGRFAM: Prolipoprotein diacylglyceryl transferase~IMG reference gene:2504921179~PFAM: Prolipoprotein diacylglyceryl transferase~TIGRFAM: prolipoprotein diacylglyceryl transferase gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2257 Trebr_2258 Trebr_2258 Trebr_2258 2676266 2678233 - transketolase COGs: COG0021 Transketolase~InterPro IPR005474:IPR005475:IPR005476:IPR005478~KEGG: tde:TDE1308 transketolase~PFAM: Transketolase%2C N-terminal%3B Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~PRIAM: Transketolase~SPTR: Transketolase%3B~TIGRFAM: Transketolase%2C bacterial-like~IMG reference gene:2504921180~PFAM: Transketolase%2C thiamine diphosphate binding domain%3B Transketolase%2C C-terminal domain%3B Transketolase%2C pyrimidine binding domain~TIGRFAM: transketolase%2C bacterial and yeast gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2258 Trebr_2259 Trebr_2259 Trebr_2259 2678354 2678830 - putative PTS IIA-like nitrogen-regulatory protein PtsN COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)~KEGG: gur:Gura_0893 putative PTS IIA-like nitrogen-regulatory protein PtsN~SPTR: Putative PTS IIA-like nitrogen-regulatory protein PtsN%3B~IMG reference gene:2504921181~PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C EIIA 2 gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2259 Trebr_2260 Trebr_2260 Trebr_2260 2678851 2680326 - hypothetical protein KEGG: tde:TDE1307 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921182 gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2260 Trebr_2261 Trebr_2261 Trebr_2261 2680790 2681227 + heat shock protein Hsp20 COGs: COG0071 Molecular chaperone (small heat shock protein)~InterPro IPR002068~KEGG: tde:TDE1029 HSP20/alpha crystallin family protein~PFAM: Heat shock protein Hsp20~SPTR: Hsp20/alpha crystallin family protein%3B~IMG reference gene:2504921183~PFAM: Hsp20/alpha crystallin family gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2261 Trebr_2262 Trebr_2262 Trebr_2262 2681383 2682021 - CBS domain containing membrane protein COGs: COG3448 CBS-domain-containing membrane protein~InterPro IPR000644~KEGG: ssm:Spirs_0348 putative signal transduction protein with CBS domains~PFAM: Cystathionine beta-synthase%2C core~SMART: Cystathionine beta-synthase%2C core~SPTR: Putative signal transduction protein with CBS domains%3B~IMG reference gene:2504921184~PFAM: CBS domain gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2262 Trebr_2263 Trebr_2263 Trebr_2263 2682050 2682754 - ABC transporter related protein COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR003593:IPR003439~KEGG: hmo:HM1_0494 branched-chain amino acid abc transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: Branched-chain amino acid abc transporter%2C ATP-binding protein%3B~IMG reference gene:2504921185~PFAM: ABC transporter gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2263 Trebr_2264 Trebr_2264 Trebr_2264 2682754 2683566 - Monosaccharide-transporting ATPase COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component~InterPro IPR003593:IPR003439~KEGG: hmo:HM1_0493 branched chain amino acid abc transporter%2C putative~PFAM: ABC transporter-like~PRIAM: Monosaccharide-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: Branched chain amino acid abc transporter%2C putative%3B~IMG reference gene:2504921186~PFAM: ABC transporter%3B Branched-chain amino acid ATP-binding cassette transporter gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2264 Trebr_2265 Trebr_2265 Trebr_2265 2683559 2684620 - ABC-type transporter%2C integral membrane subunit COGs: COG4177 ABC-type branched-chain amino acid transport system permease component~InterPro IPR001851~KEGG: sta:STHERM_c19050 transporter~PFAM: Bacterial inner-membrane translocator~SPTR: Transporter%3B~IMG reference gene:2504921187~PFAM: Branched-chain amino acid transport system / permease component gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2265 Trebr_2266 Trebr_2266 Trebr_2266 2684620 2685519 - ABC-type transporter%2C integral membrane subunit COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components~InterPro IPR001851~KEGG: sta:STHERM_c19060 hypothetical protein~PFAM: Bacterial inner-membrane translocator~SPTR: Amino acid/amide ABC transporter membrane protein 1%2C HAAT family%3B~IMG reference gene:2504921188~PFAM: Branched-chain amino acid transport system / permease component gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2266 Trebr_2267 Trebr_2267 Trebr_2267 2685700 2686848 - Extracellular ligand-binding receptor COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component~InterPro IPR001828~KEGG: sta:STHERM_c19070 hypothetical protein~PFAM: Extracellular ligand-binding receptor~SPTR: Extracellular ligand-binding receptor%3B~IMG reference gene:2504921189~PFAM: Receptor family ligand binding region gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2267 Trebr_2268 Trebr_2268 Trebr_2268 2686979 2687155 - hypothetical protein KEGG: tde:TDE0793 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921190 gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2268 Trebr_2269 Trebr_2269 Trebr_2269 2687186 2687704 - 50S ribosomal protein L17 COGs: COG0203 Ribosomal protein L17~HAMAP: 50S ribosomal protein L17~InterPro IPR000456~KEGG: tde:TDE0792 50S ribosomal protein L17~PFAM: Ribosomal protein L17~SPTR: 50S ribosomal protein L17%3B~TIGRFAM: Ribosomal protein L17~IMG reference gene:2504921191~PFAM: Ribosomal protein L17~TIGRFAM: ribosomal protein L17 gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2269 Trebr_2270 Trebr_2270 Trebr_2270 2687694 2688746 - DNA-directed RNA polymerase subunit alpha COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit~HAMAP: DNA-directed RNA polymerase%2C alpha subunit~InterProIPR011773:IPR011263:IPR011261:IPR011262:IPR 011260~KEGG: ssm:Spirs_0980 DNA-directed RNA polymerase%2C alpha subunit~PFAM: RNA polymerase%2C alpha subunit%2C C-terminal%3B DNA-directed RNA polymerase%2C dimerisation%3B DNA-directed RNA polymerase%2C insert~SMART: DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type~SPTR: DNA-directed RNA polymerase subunit alpha%3B~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit~IMG reference gene:2504921192~PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain%3B RNA polymerase Rpb3/RpoA insert domain%3B Bacterial RNA polymerase%2C alpha chain C terminal domain~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit%2C bacterial and chloroplast-type gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2270 Trebr_2271 Trebr_2271 Trebr_2271 2688758 2689393 - ribosomal protein S4 COGs: COG0522 Ribosomal protein S4 and related protein~InterPro IPR002942:IPR001912:IPR005709~KEGG: ssm:Spirs_0979 ribosomal protein S4~PFAM: RNA-binding S4%3B Ribosomal protein S4~SMART: RNA-binding S4~SPTR: 30S ribosomal protein S4 1%3B~TIGRFAM: Ribosomal protein S4%2C bacterial-type~IMG reference gene:2504921193~PFAM: Ribosomal protein S4/S9 N-terminal domain%3B S4 domain~TIGRFAM: ribosomal protein S4%2C bacterial/organelle type gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2271 Trebr_2272 Trebr_2272 Trebr_2272 2689412 2689792 - 30S ribosomal protein S11 COGs: COG0100 Ribosomal protein S11~InterPro IPR001971:IPR019981~KEGG: tde:TDE0790 30S ribosomal protein S11~PFAM: Ribosomal protein S11~SPTR: 30S ribosomal protein S11%3B~TIGRFAM: Ribosomal protein S11%2C bacterial-type~IMG reference gene:2504921194~PFAM: Ribosomal protein S11~TIGRFAM: 30S ribosomal protein S11 gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2272 Trebr_2273 Trebr_2273 Trebr_2273 2689810 2690175 - 30S ribosomal protein S13 COGs: COG0099 Ribosomal protein S13~InterPro IPR001892:IPR019980~KEGG: tpp:TPASS_0210 30S ribosomal protein S13~PFAM: Ribosomal protein S13~SPTR: 30S ribosomal protein S13%3B~TIGRFAM: Ribosomal protein S13%2C bacterial-type~IMG reference gene:2504921195~PFAM: Ribosomal protein S13/S18~TIGRFAM: 30S ribosomal protein S13 gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2273 Trebr_2274 Trebr_2274 Trebr_2274 2690186 2690299 - 50S ribosomal protein L36 HAMAP: Ribosomal protein L36~InterPro IPR000473~KEGG: tde:TDE0788 50S ribosomal protein L36~PFAM: Ribosomal protein L36~SPTR: 50S ribosomal protein L36%3B~TIGRFAM: Ribosomal protein L36~manually curated~IMG reference gene:2504921196~PFAM: Ribosomal protein L36~TIGRFAM: ribosomal protein L36%2C bacterial type gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2274 Trebr_2275 Trebr_2275 Trebr_2275 2690424 2691743 - preprotein translocase%2C SecY subunit COGs: COG0201 Preprotein translocase subunit SecY~InterPro IPR002208~KEGG: tde:TDE0787 preprotein translocase subunit SecY~PFAM: SecY protein~SPTR: Preprotein translocase%2C SecY subunit%3B~TIGRFAM: SecY protein~IMG reference gene:2504921197~PFAM: eubacterial secY protein~TIGRFAM: preprotein translocase%2C SecY subunit gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2275 Trebr_2276 Trebr_2276 Trebr_2276 2691761 2692213 - ribosomal protein L15 COGs: COG0200 Ribosomal protein L15~InterPro IPR001196:IPR005749~KEGG: tde:TDE0786 50S ribosomal protein L15~PFAM: Ribosomal protein L15~SPTR: 50S ribosomal protein L15%3B~TIGRFAM: Ribosomal protein L15%2C bacterial-type~IMG reference gene:2504921198~PFAM: Ribosomal protein L18e/L15~TIGRFAM: ribosomal protein L15%2C bacterial/organelle gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2276 Trebr_2277 Trebr_2277 Trebr_2277 2692213 2692398 - ribosomal protein L30 COGs: COG1841 Ribosomal protein L30/L7E~InterPro IPR000517:IPR005996~KEGG: tde:TDE0785 50S ribosomal protein L30~PFAM: Ribosomal protein L30p/L7e%2C conserved region~SPTR: 50S ribosomal protein L30%3B~TIGRFAM: Ribosomal protein L30%2C bacterial-type~IMG reference gene:2504921199~PFAM: Ribosomal protein L30p/L7e~TIGRFAM: ribosomal protein L30%2C bacterial/organelle gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2277 Trebr_2278 Trebr_2278 Trebr_2278 2692402 2692914 - ribosomal protein S5 COGs: COG0098 Ribosomal protein S5~InterPro IPR013810:IPR005324:IPR005712~KEGG: tde:TDE0784 30S ribosomal protein S5~PFAM: Ribosomal protein S5%2C N-terminal%3B Ribosomal protein S5%2C C-terminal~SPTR: 30S ribosomal protein S5%3B~TIGRFAM: Ribosomal protein S5%2C bacterial-type~IMG reference gene:2504921200~PFAM: Ribosomal protein S5%2C C-terminal domain%3B Ribosomal protein S5%2C N-terminal domain~TIGRFAM: ribosomal protein S5%2C bacterial/organelle type gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2278 Trebr_2279 Trebr_2279 Trebr_2279 2692923 2693285 - ribosomal protein L18 COGs: COG0256 Ribosomal protein L18~InterPro IPR005484:IPR004389~KEGG: tde:TDE0783 50S ribosomal protein L18~PFAM: Ribosomal protein L18/L5~SPTR: 50S ribosomal protein L18%3B~TIGRFAM: Ribosomal protein L18%2C bacterial~IMG reference gene:2504921201~PFAM: Ribosomal L18p/L5e family~TIGRFAM: ribosomal protein L18%2C bacterial type gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2279 Trebr_2280 Trebr_2280 Trebr_2280 2693298 2693837 - ribosomal protein L6 COGs: COG0097 Ribosomal protein L6P/L9E~InterPro IPR020040:IPR019906~KEGG: tde:TDE0782 50S ribosomal protein L6~PFAM: Ribosomal protein L6%2C alpha-beta domain~SPTR: 50S ribosomal protein L6%3B~TIGRFAM: Ribosomal protein L6%2C bacterial-type~IMG reference gene:2504921202~PFAM: Ribosomal protein L6~TIGRFAM: ribosomal protein L6%2C bacterial type gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2280 Trebr_2281 Trebr_2281 Trebr_2281 2693850 2694248 - ribosomal protein S8 COGs: COG0096 Ribosomal protein S8~InterPro IPR000630~KEGG: tpp:TPASS_0203 30S ribosomal protein S8~PFAM: Ribosomal protein S8~SPTR: 30S ribosomal protein S8%3B~IMG reference gene:2504921203~PFAM: Ribosomal protein S8 gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2281 Trebr_2282 Trebr_2282 Trebr_2282 2694264 2694449 - ribosomal protein S14 COGs: COG0199 Ribosomal protein S14~InterPro IPR001209~KEGG: ssm:Spirs_0968 ribosomal protein S14~PFAM: Ribosomal protein S14~SPTR: 30S ribosomal protein S14 type Z%3B~IMG reference gene:2504921204~PFAM: Ribosomal protein S14p/S29e gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2282 Trebr_2283 Trebr_2283 Trebr_2283 2694461 2695012 - ribosomal protein L5 COGs: COG0094 Ribosomal protein L5~InterPro IPR002132~KEGG: tde:TDE0779 50S ribosomal protein L5~PFAM: Ribosomal protein L5~SPTR: 50S ribosomal protein L5%3B~IMG reference gene:2504921205~PFAM: ribosomal L5P family C-terminus%3B Ribosomal protein L5 gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2283 Trebr_2284 Trebr_2284 Trebr_2284 2695012 2695326 - ribosomal protein L24 COGs: COG0198 Ribosomal protein L24~InterPro IPR005824:IPR003256~KEGG: tde:TDE0778 50S ribosomal protein L24~PFAM: KOW~SMART: KOW~SPTR: 50S ribosomal protein L24%3B~TIGRFAM: Ribosomal protein L24~IMG reference gene:2504921206~PFAM: KOW motif~TIGRFAM: ribosomal protein L24%2C bacterial/organelle gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2284 Trebr_2285 Trebr_2285 Trebr_2285 2695353 2695721 - ribosomal protein L14 COGs: COG0093 Ribosomal protein L14~InterPro IPR000218:IPR005745~KEGG: tpp:TPASS_0199 50S ribosomal protein L14~PFAM: Ribosomal protein L14b/L23e~SPTR: 50S ribosomal protein L14%3B~TIGRFAM: Ribosomal protein L14%2C bacterial-type~IMG reference gene:2504921207~PFAM: Ribosomal protein L14p/L23e~TIGRFAM: ribosomal protein L14%2C bacterial/organelle gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2285 Trebr_2286 Trebr_2286 Trebr_2286 2695739 2696014 - 30S ribosomal protein S17 COGs: COG0186 Ribosomal protein S17~InterPro IPR000266:IPR019984~KEGG: tde:TDE0776 30S ribosomal protein S17~PFAM: Ribosomal protein S17~SPTR: 30S ribosomal protein S17%3B~TIGRFAM: Ribosomal protein S17%2C bacterial-type~IMG reference gene:2504921208~PFAM: Ribosomal protein S17~TIGRFAM: 30S ribosomal protein S17 gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2286 Trebr_2287 Trebr_2287 Trebr_2287 2696025 2696225 - ribosomal protein L29 InterPro IPR001854~KEGG: tde:TDE0775 50S ribosomal protein L29~PFAM: Ribosomal protein L29~SPTR: 50S ribosomal protein L29%3B~TIGRFAM: Ribosomal protein L29~IMG reference gene:2504921209~PFAM: Ribosomal L29 protein~TIGRFAM: ribosomal protein L29 gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2287 Trebr_2288 Trebr_2288 Trebr_2288 2696236 2696655 - 50S ribosomal protein L16 COGs: COG0197 Ribosomal protein L16/L10E~HAMAP: Ribosomal protein L16~InterPro IPR000114:IPR016180~KEGG: tpp:TPASS_0196 50S ribosomal protein L16~PFAM: Ribosomal protein L10e/L16~SPTR: 50S ribosomal protein L16%3B~TIGRFAM: Ribosomal protein L16~IMG reference gene:2504921210~PFAM: Ribosomal protein L16p/L10e~TIGRFAM: ribosomal protein L16%2C bacterial/organelle gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2288 Trebr_2289 Trebr_2289 Trebr_2289 2696658 2697404 - ribosomal protein S3 COGs: COG0092 Ribosomal protein S3~InterPro IPR008282:IPR004044:IPR001351:IPR005704~KEGG: tde:TDE0773 30S ribosomal protein S3~PFAM: Ribosomal protein S3%2C C-terminal%3B Ribosomal protein S3%2C N-terminal%3B K Homology%2C type 2~SPTR: 30S ribosomal protein S3%3B~TIGRFAM: Ribosomal protein S3%2C bacterial~IMG reference gene:2504921211~PFAM: KH domain%3B Ribosomal protein S3%2C C-terminal domain%3B Ribosomal protein S3%2C N-terminal domain~TIGRFAM: ribosomal protein S3%2C bacterial type gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2289 Trebr_2290 Trebr_2290 Trebr_2290 2697406 2697762 - ribosomal protein L22 COGs: COG0091 Ribosomal protein L22~InterPro IPR001063:IPR005727~KEGG: tde:TDE0772 50S ribosomal protein L22~PFAM: Ribosomal protein L22/L17~SPTR: 50S ribosomal protein L22%3B~TIGRFAM: Ribosomal protein L22%2C bacterial-type~IMG reference gene:2504921212~PFAM: Ribosomal protein L22p/L17e~TIGRFAM: ribosomal protein L22%2C bacterial type gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2290 Trebr_2291 Trebr_2291 Trebr_2291 2697772 2698050 - ribosomal protein S19 COGs: COG0185 Ribosomal protein S19~InterPro IPR002222:IPR005732~KEGG: ssm:Spirs_0959 ribosomal protein S19~PFAM: Ribosomal protein S19/S15~SPTR: 30S ribosomal protein S19%3B~TIGRFAM: Ribosomal protein S19%2C bacterial-type~manually curated~IMG reference gene:2504921213~PFAM: Ribosomal protein S19~TIGRFAM: ribosomal protein S19%2C bacterial/organelle gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2291 Trebr_2292 Trebr_2292 Trebr_2292 2698068 2698892 - ribosomal protein L2 COGs: COG0090 Ribosomal protein L2~InterPro IPR002171:IPR005880~KEGG: tde:TDE0770 50S ribosomal protein L2~PFAM: Ribosomal protein L2~SPTR: 50S ribosomal protein L2%3B~TIGRFAM: Ribosomal protein L2%2C bacterial-type~IMG reference gene:2504921214~PFAM: Ribosomal Proteins L2%2C RNA binding domain%3B Ribosomal Proteins L2%2C C-terminal domain~TIGRFAM: ribosomal protein L2%2C bacterial/organellar gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2292 Trebr_2293 Trebr_2293 Trebr_2293 2698931 2699215 - Ribosomal protein L25/L23 COGs: COG0089 Ribosomal protein L23~InterPro IPR013025~KEGG: tde:TDE0769 50S ribosomal protein L23~PFAM: Ribosomal protein L25/L23~SPTR: 50S ribosomal protein L23%3B~IMG reference gene:2504921215~PFAM: Ribosomal protein L23 gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2293 Trebr_2294 Trebr_2294 Trebr_2294 2699215 2699847 - ribosomal protein L4/L1e COGs: COG0088 Ribosomal protein L4~InterPro IPR002136~KEGG: tde:TDE0768 50S ribosomal protein L4~PFAM: Ribosomal protein L4/L1e~SPTR: 50S ribosomal protein L4%3B~IMG reference gene:2504921216~PFAM: Ribosomal protein L4/L1 family~TIGRFAM: 50S ribosomal protein L4%2C bacterial/organelle gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2294 Trebr_2295 Trebr_2295 Trebr_2295 2699863 2700483 - 50S ribosomal protein L3 COGs: COG0087 Ribosomal protein L3~InterPro IPR000597:IPR019927~KEGG: tde:TDE0767 50S ribosomal protein L3~PFAM: Ribosomal protein L3~SPTR: 50S ribosomal protein L3%3B~TIGRFAM: Ribosomal protein L3%2C bacterial/organelle-type~IMG reference gene:2504921217~PFAM: Ribosomal protein L3~TIGRFAM: 50S ribosomal protein L3%2C bacterial gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2295 Trebr_2296 Trebr_2296 Trebr_2296 2700585 2700893 - 30S ribosomal protein S10 COGs: COG0051 Ribosomal protein S10~HAMAP: 30S ribosomal protein S10~InterPro IPR001848:IPR005731~KEGG: ssm:Spirs_0954 ribosomal protein S10~PFAM: Ribosomal protein S10~SPTR: 30S ribosomal protein S10%3B~TIGRFAM: Ribosomal protein S10%2C bacterial~IMG reference gene:2504921218~PFAM: Ribosomal protein S10p/S20e~TIGRFAM: ribosomal protein S10%2C bacterial/organelle gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2296 Trebr_2297 Trebr_2297 Trebr_2297 2700972 2702159 - translation elongation factor Tu COGs: COG0050 GTPase - translation elongation factors~InterProIPR000795:IPR004161:IPR004160:IPR004541:IPR 005225~KEGG: tde:TDE0765 elongation factor Tu~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFTu/EF1A%2C C-terminal~SPTR: Elongation factor Tu%3B~TIGRFAM: Translation elongation factor EFTu/EF1A%2C bacterial/organelle%3B Small GTP-binding protein~IMG reference gene:2504921219~PFAM: Elongation factor Tu domain 2%3B Elongation factor Tu C-terminal domain%3B Elongation factor Tu GTP binding domain~TIGRFAM: small GTP-binding protein domain%3B translation elongation factor TU gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2297 Trebr_2298 Trebr_2298 Trebr_2298 2702743 2703213 - ribosomal protein S7 COGs: COG0049 Ribosomal protein S7~InterPro IPR000235:IPR005717~KEGG: tde:TDE1048 30S ribosomal protein S7~PFAM: Ribosomal protein S7~SPTR: 30S ribosomal protein S7%3B~TIGRFAM: Ribosomal protein S7%2C bacterial-type~IMG reference gene:2504921220~PFAM: Ribosomal protein S7p/S5e~TIGRFAM: ribosomal protein S7%2C bacterial/organelle gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2298 Trebr_2299 Trebr_2299 Trebr_2299 2703226 2703600 - ribosomal protein S12 COGs: COG0048 Ribosomal protein S12~InterPro IPR006032:IPR005679~KEGG: sta:STHERM_c04920 30S ribosomal protein S12~PFAM: Ribosomal protein S12/S23~SPTR: 30S ribosomal protein S12%3B~TIGRFAM: Ribosomal protein S12%2C bacterial-type~IMG reference gene:2504921221~PFAM: Ribosomal protein S12~TIGRFAM: ribosomal protein S12%2C bacterial/organelle gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2299 Trebr_2300 Trebr_2300 Trebr_2300 2703762 2708003 - DNA-directed RNA polymerase subunit beta' COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit~HAMAP: DNA-directed RNA polymerase subunit beta'~InterProIPR006592:IPR007080:IPR000722:IPR007066:IPR 007083:IPR007081:IPR012754~KEGG: tpp:TPASS_0242 DNA-directed RNA polymerase subunit beta'~PFAM: RNA polymerase Rpb1%2C domain 1%3B RNA polymerase%2C alpha subunit%3B RNA polymerase Rpb1%2C domain 3%3B RNA polymerase Rpb1%2C domain 4%3B RNA polymerase Rpb1%2C domain 5~SMART: RNA polymerase%2C N-terminal~SPTR: DNA-directed RNA polymerase subunit beta'%3B~TIGRFAM: DNA-directed RNA polymerase%2C subunit beta-prime~IMG reference gene:2504921222~PFAM: RNA polymerase Rpb1%2C domain 2%3B RNA polymerase Rpb1%2C domain 4%3B RNA polymerase Rpb1%2C domain 1%3B RNA polymerase Rpb1%2C domain 3%3B RNA polymerase Rpb1%2C domain 5~TIGRFAM: DNA-directed RNA polymerase%2C beta' subunit%2C predominant form gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2300 Trebr_2301 Trebr_2301 Trebr_2301 2708084 2711605 - DNA-directed RNA polymerase subunit beta COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit~HAMAP: DNA-directed RNA polymerase subunit beta~InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243~KEGG: tde:TDE2421 DNA-directed RNA polymerase subunit beta~PFAM: DNA-directed RNA polymerase%2C subunit 2%2C domain 6%3B RNA polymerase Rpb2%2C domain 3%3B RNA polymerase%2C beta subunit%2C protrusion%3B RNA polymerase Rpb2%2C domain 2%3B DNA-directed RNA polymerase%2C beta subunit%2C external 1 domain%3B RNA polymerase Rpb2%2C domain 7~SPTR: DNA-directed RNA polymerase subunit beta%3B~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit%2C bacterial-type~IMG reference gene:2504921223~PFAM: RNA polymerase Rpb2%2C domain 3%3B RNA polymerase Rpb2%2C domain 6%3B RNA polymerase beta subunit external 1 domain%3B RNA polymerase Rpb2%2C domain 2%3B RNA polymerase beta subunit%3B RNA polymerase Rpb2%2C domain 7~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2301 Trebr_2302 Trebr_2302 Trebr_2302 2711765 2712145 - 50S ribosomal protein L7/L12 COGs: COG0222 Ribosomal protein L7/L12~HAMAP: Ribosomal protein L7/L12~InterPro IPR000206:IPR013823~KEGG: emi:Emin_1429 ribosomal protein L7/L12~PFAM: Ribosomal protein L7/L12%2C C-terminal~SPTR: 50S ribosomal protein L7/L12%3B~TIGRFAM: Ribosomal protein L7/L12~IMG reference gene:2504921224~PFAM: Ribosomal protein L7/L12 C-terminal domain~TIGRFAM: ribosomal protein L7/L12 gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2302 Trebr_2303 Trebr_2303 Trebr_2303 2712262 2712783 - 50S ribosomal protein L10 COGs: COG0244 Ribosomal protein L10~HAMAP: 50S ribosomal protein L10~InterPro IPR001790~KEGG: tde:TDE2423 50S ribosomal protein L10~PFAM: Ribosomal protein L10~SPTR: 50S ribosomal protein L10%3B~IMG reference gene:2504921225~PFAM: Ribosomal protein L10 gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2303 Trebr_2304 Trebr_2304 Trebr_2304 2712786 2713466 - ribosomal protein L1 COGs: COG0081 Ribosomal protein L1~InterPro IPR002143:IPR005878~KEGG: tde:TDE2424 50S ribosomal protein L1~PFAM: Ribosomal protein L1~SPTR: 50S ribosomal protein L1%3B~TIGRFAM: Ribosomal protein L1%2C bacterial-type~IMG reference gene:2504921226~PFAM: Ribosomal protein L1p/L10e family~TIGRFAM: ribosomal protein L1%2C bacterial/chloroplast gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2304 Trebr_2305 Trebr_2305 Trebr_2305 2713468 2713899 - ribosomal protein L11 COGs: COG0080 Ribosomal protein L11~InterPro IPR000911:IPR020784:IPR020783:IPR006519~KEGG: tde:TDE2425 50S ribosomal protein L11~PFAM: Ribosomal protein L11%2C C-terminal%3B Ribosomal protein L11%2C N-terminal~SMART: Ribosomal protein L11~SPTR: 50S ribosomal protein L11%3B~TIGRFAM: Ribosomal protein L11%2C bacterial-type~IMG reference gene:2504921227~PFAM: Ribosomal protein L11%2C RNA binding domain%3B Ribosomal protein L11%2C N-terminal domain~TIGRFAM: 50S ribosomal protein L11 gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2305 Trebr_2306 Trebr_2306 Trebr_2306 2714048 2714605 - NusG antitermination factor COGs: COG0250 Transcription antiterminator~InterPro IPR006645:IPR005824:IPR001062~KEGG: ssm:Spirs_0944 NusG antitermination factor~PFAM: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW~SMART: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW~SPTR: Transcription antitermination protein nusG%3B~TIGRFAM: Transcription antitermination protein%2C NusG~IMG reference gene:2504921228~PFAM: Transcription termination factor nusG%3B KOW motif~TIGRFAM: transcription termination/antitermination factor NusG gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2306 Trebr_2307 Trebr_2307 Trebr_2307 2714619 2714798 - preprotein translocase%2C SecE subunit InterPro IPR001901:IPR005807~KEGG: ssm:Spirs_0943 preprotein translocase%2C SecE subunit~PFAM: Protein secE/sec61-gamma protein~SPTR: Preprotein translocase%2C SecE subunit%3B~TIGRFAM: SecE subunit of protein translocation complex~IMG reference gene:2504921229~PFAM: SecE/Sec61-gamma subunits of protein translocation complex~TIGRFAM: preprotein translocase%2C SecE subunit%2C bacterial gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2307 Trebr_2308 Trebr_2308 Trebr_2308 2714930 2715103 - 50S ribosomal protein L33 HAMAP: Ribosomal protein L33~InterPro IPR001705~KEGG: tde:TDE2428 50S ribosomal protein L33~PFAM: Ribosomal protein L33~SPTR: 50S ribosomal protein L33%3B~TIGRFAM: Ribosomal protein L33~IMG reference gene:2504921231~PFAM: Ribosomal protein L33~TIGRFAM: ribosomal protein L33%2C bacterial type gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2308 Trebr_2309 Trebr_2309 Trebr_2309 2715433 2716281 + Serine O-acetyltransferase COGs: COG1045 Serine acetyltransferase~InterPro IPR001451~KEGG: sta:STHERM_c02440 serine acetyltransferase~PFAM: Bacterial transferase hexapeptide repeat~PRIAM: Serine O-acetyltransferase~SPTR: Serine acetyltransferase%3B~IMG reference gene:2504921233~PFAM: Bacterial transferase hexapeptide (three repeats)~TIGRFAM: serine O-acetyltransferase gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2309 Trebr_2310 Trebr_2310 Trebr_2310 2716310 2717548 - Methicillin resistance protein COGs: COG2348 Uncharacterized protein involved in methicillin resistance~InterPro IPR003447~KEGG: dvm:DvMF_2928 methicillin resistance protein~PFAM: Methicillin resistance protein~SPTR: Methicillin resistance protein%3B~IMG reference gene:2504921234~PFAM: FemAB family gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2310 Trebr_2311 Trebr_2311 Trebr_2311 2717997 2718242 + hypothetical protein KEGG: dma:DMR_03540 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921235~PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2311 Trebr_2312 Trebr_2312 Trebr_2312 2718239 2719993 + Fe-S cluster domain protein COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain~InterPro IPR001450:IPR007202~KEGG: sta:STHERM_c12360 hypothetical protein~PFAM: Putative Fe-S cluster%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: Putative Fe-S PAS/PAC sensor protein%3B~IMG reference gene:2504921236~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B Putative Fe-S cluster gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2312 Trebr_2313 Trebr_2313 Trebr_2313 2719990 2721228 + Stage II sporulation protein E InterPro IPR010822~KEGG: sta:STHERM_c12350 hypothetical protein~PFAM: Sporulation stage II%2C protein E C-terminal~SPTR: Putative stage II sporulation E family protein%3B~IMG reference gene:2504921237~PFAM: Stage II sporulation protein E (SpoIIE) gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2313 Trebr_2314 Trebr_2314 Trebr_2314 2721420 2721674 + hypothetical protein KEGG: sta:STHERM_c12340 hypothetical protein~SPTR: Hydrogenase large subunit%3B~IMG reference gene:2504921238~PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2314 Trebr_2315 Trebr_2315 Trebr_2315 2721812 2723287 + Ferredoxin hydrogenase COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain~InterPro IPR001450:IPR004108~KEGG: tde:TDE1277 Fe-hydrogenase large subunit family protein~PFAM: Iron hydrogenase%2C large subunit%2C C-terminal%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~PRIAM: Ferredoxin hydrogenase~SPTR: Fe-hydrogenase large subunit family protein%3B~IMG reference gene:2504921239~PFAM: Iron only hydrogenase large subunit%2C C-terminal domain%3B 4Fe-4S binding domain gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2315 Trebr_2316 Trebr_2316 Trebr_2316 2723594 2726269 + cell division protein FtsK/SpoIIIE COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein~InterPro IPR003593:IPR002543:IPR018541~KEGG: tde:TDE0173 FtsK/SpoIIIE family protein~PFAM: Cell divisionFtsK/SpoIIIE%3B DNA translocase ftsK gamma~SMART: ATPase%2C AAA+ type%2C core~SPTR: DNA translocase ftsk%3B~IMG reference gene:2504921240~PFAM: Ftsk gamma domain%3B FtsK/SpoIIIE family gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2316 Trebr_2317 Trebr_2317 Trebr_2317 2727405 2728634 - transporter%2C putative COGs: COG1301 Na+/H+-dicarboxylate symporter~KEGG: tde:TDE1111 transporter%2C putative~SPTR: Transporter%2C putative%3B~IMG reference gene:2504921241~PFAM: Sodium:dicarboxylate symporter family gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2317 Trebr_2318 Trebr_2318 Trebr_2318 2728825 2729817 - Auxin Efflux Carrier COGs: COG0679 permease~InterPro IPR004776~KEGG: auxin efflux carrier~PFAM: Auxin efflux carrier~SPTR: Auxin Efflux Carrier%3B~IMG reference gene:2504921242~PFAM: Membrane transport protein gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2318 Trebr_2319 Trebr_2319 Trebr_2319 2729858 2732641 - Beta-glucosidase COGs: COG1472 Beta-glucosidase-related glycosidase~InterPro IPR002772:IPR001764~KEGG: eat:EAT1b_1776 glycoside hydrolase family 3 domain protein~PFAM: Glycoside hydrolase%2C family 3%2C N-terminal%3B Glycoside hydrolase%2C family 3%2C C-terminal~PRIAM: Beta-glucosidase~SPTR: Beta-glucosidase-related glycosidases%3B~IMG reference gene:2504921243~PFAM: Glycosyl hydrolase family 3 C terminal domain%3B Glycosyl hydrolase family 3 N terminal domain gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2319 Trebr_2320 Trebr_2320 Trebr_2320 2732931 2734073 + hypothetical protein KEGG: hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921244 gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2320 Trebr_2321 Trebr_2321 Trebr_2321 2734142 2734783 - peroxiredoxin COGs: COG0450 Peroxiredoxin~HAMAP: peroxiredoxin~InterPro IPR000866:IPR019479~KEGG: drt:Dret_2393 peroxiredoxin~PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Peroxiredoxin%2C C-terminal~PRIAM: Peroxiredoxin~SPTR: Probable peroxiredoxin%3B~IMG reference gene:2504921245~PFAM: C-terminal domain of 1-Cys peroxiredoxin%3B AhpC/TSA family gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2321 Trebr_2322 Trebr_2322 Trebr_2322 2734994 2735572 - methylated-DNA/protein-cysteinemethyltransferase COGs: COG0350 Methylated DNA-protein cysteine methyltransferase~InterPro IPR008332:IPR014048~KEGG: amu:Amuc_0725 methylated-DNA/protein-cysteine methyltransferase~PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding%3B Methylguanine DNA methyltransferase%2C ribonuclease-like~SPTR: Methylated-DNA-[protein]-cysteine S-methyltransferase%3B~TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding~IMG reference gene:2504921246~PFAM: 6-O-methylguanine DNA methyltransferase%2C ribonuclease-like domain%3B 6-O-methylguanine DNA methyltransferase%2C DNA binding domain~TIGRFAM: O-6-methylguanine DNA methyltransferase gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2322 Trebr_2323 Trebr_2323 Trebr_2323 2735617 2736531 - alpha/beta hydrolase fold protein COGs: COG2267 Lysophospholipase~InterPro IPR000073~KEGG: cbe:Cbei_1305 lysophospholipase~PFAM: Alpha/beta hydrolase fold-1~SPTR: Putative hydrolase%2C alpha/beta hydrolase fold family%3B~IMG reference gene:2504921247~PFAM: Putative lysophospholipase gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2323 Trebr_2324 Trebr_2324 Trebr_2324 2736731 2737591 + oxidoreductase FAD/NAD(P)-binding domain protein COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase~InterPro IPR001433:IPR019480~KEGG: tde:TDE0408 ferredoxin-NADP(+) reductase subunit alpha~PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain~SPTR: Ferredoxin--NADP%3B~IMG reference gene:2504921248~PFAM: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B%3B Oxidoreductase NAD-binding domain gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2324 Trebr_2325 Trebr_2325 Trebr_2325 2737588 2739087 + glutamate synthase (NADPH)%2C homotetrameric COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase~InterPro IPR013027:IPR006004~KEGG: tde:TDE0407 putative oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PRIAM: Glutamate synthase (NADPH)~SPTR: Glutamate synthase%2C homotetrameric%3B~TIGRFAM: Glutamate synthase (NADPH)%2C homotetrameric~IMG reference gene:2504921249~PFAM: Pyridine nucleotide-disulphide oxidoreductase~TIGRFAM: glutamate synthase (NADPH)%2C homotetrameric gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2325 Trebr_2326 Trebr_2326 Trebr_2326 2739396 2741303 - Long-chain-fatty-acid--CoA ligase.%2C o-succinylbenzoate--CoA ligase COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming)~InterPro IPR000873~KEGG: tde:TDE1742 AMP-binding enzyme family protein~PFAM: AMP-dependent synthetase/ligase~PRIAM: Long-chain-fatty-acid--CoA ligase.%2C o-succinylbenzoate--CoA ligase~SPTR: AMP-binding enzyme family protein%3B~IMG reference gene:2504921250~PFAM: AMP-binding enzyme gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2326 Trebr_2327 Trebr_2327 Trebr_2327 2741461 2743017 - Phenylalanyl-tRNA synthetase alpha chain COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit~HAMAP: Phenylalanyl-tRNA synthetase alpha chain~InterPro IPR002319:IPR004529~KEGG: tde:TDE0109 phenylalanyl-tRNA synthetase subunit alpha~PFAM: Phenylalanyl-tRNA synthetase alpha chain~SPTR: Phenylalanyl-tRNA synthetase alpha chain%3B~TIGRFAM: Phenylalanyl-tRNA synthetase%2C class IIc%2C alpha subunit~IMG reference gene:2504921251~PFAM: tRNA synthetases class II core domain (F)~TIGRFAM: phenylalanyl-tRNA synthetase%2C alpha subunit gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2327 Trebr_2328 Trebr_2328 Trebr_2328 2743030 2743398 - hypothetical protein IMG reference gene:2504921252 gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2328 Trebr_2329 Trebr_2329 Trebr_2329 2743482 2744180 - hypothetical protein KEGG: tde:TDE0123 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921253 gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2329 Trebr_2330 Trebr_2330 Trebr_2330 2744156 2744797 - Rhomboid family protein COGs: COG0705 membrane protein~InterPro IPR002610~KEGG: sta:STHERM_c21730 rhomboid family protein~PFAM: Peptidase S54%2C rhomboid~SPTR: Rhomboid family protein%3B~IMG reference gene:2504921254~PFAM: Rhomboid family gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2330 Trebr_2331 Trebr_2331 Trebr_2331 2744834 2745961 - diguanylate cyclase COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain~InterPro IPR000160~KEGG: tde:TDE0125 GGDEF domain-containing protein~PFAM: Diguanylate cyclase%2C predicted~SMART: Diguanylate cyclase%2C predicted~SPTR: GGDEF domain protein%3B~TIGRFAM: Diguanylate cyclase%2C predicted~IMG reference gene:2504921255~PFAM: GGDEF domain~TIGRFAM: diguanylate cyclase (GGDEF) domain gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2331 Trebr_2332 Trebr_2332 Trebr_2332 2745961 2747541 - hypothetical protein KEGG: tde:TDE0126 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921256 gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2332 Trebr_2333 Trebr_2333 Trebr_2333 2747601 2750465 - adenylate/guanylate cyclase with Chase sensor COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR001054:IPR007890~KEGG: tde:TDE0932 adenylate/guanylate cyclase catalytic domain-containing protein~PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase%3B CHASE2~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase~SPTR: Adenylate/guanylate cyclase catalytic domain protein%3B~IMG reference gene:2504921257~PFAM: Adenylate and Guanylate cyclase catalytic domain%3B CHASE2 domain gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2333 Trebr_2334 Trebr_2334 Trebr_2334 2750702 2752255 + hypothetical protein IMG reference gene:2504921258 gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2334 Trebr_2335 Trebr_2335 Trebr_2335 2752299 2752769 + hypothetical protein KEGG: tde:TDE1328 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921259 gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2335 Trebr_2336 Trebr_2336 Trebr_2336 2752766 2753869 + hypothetical protein KEGG: tde:TDE1327 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921260 gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2336 Trebr_2337 Trebr_2337 Trebr_2337 2753879 2754589 + hypothetical protein KEGG: tde:TDE1324 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921261~PFAM: FecR protein gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2337 Trebr_2338 Trebr_2338 Trebr_2338 2754582 2755676 - glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: tde:TDE2241 glycosyl transferase%2C group 2 family protein~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase%2C group 2 family%3B~IMG reference gene:2504921262~PFAM: Glycosyl transferase family 2 gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2338 Trebr_2339 Trebr_2339 Trebr_2339 2755710 2756936 - TIM-barrel protein%2C nifR3 family COGs: COG0042 tRNA-dihydrouridine synthase~InterPro IPR001269:IPR004652~KEGG: tde:TDE2731 NifR3 family TIM-barrel protein~PFAM: tRNA-dihydrouridine synthase~SPTR: tRNA-dihydrouridine synthase%3B~TIGRFAM: tRNA-dihydrouridine synthase%2C TIM-barrel%2C NifR3~IMG reference gene:2504921263~PFAM: Dihydrouridine synthase (Dus)~TIGRFAM: putative TIM-barrel protein%2C nifR3 family gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2339 Trebr_2340 Trebr_2340 Trebr_2340 2756945 2757718 - hydrolase%2C TatD family COGs: COG0084 Mg-dependent DNase~InterPro IPR001130:IPR015991~KEGG: tde:TDE2730 TatD family hydrolase~PFAM: Deoxyribonuclease%2C TatD-related~SPTR: Hydrolase%2C TatD family%3B~TIGRFAM: Deoxyribonuclease%2C TatD Mg-dependent%2C prokaryote~IMG reference gene:2504921264~PFAM: TatD related DNase~TIGRFAM: hydrolase%2C TatD family gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2340 Trebr_2341 Trebr_2341 Trebr_2341 2758007 2759029 + Peptidase M23 COGs: COG0739 Membrane protein related to metalloendopeptidase~InterPro IPR016047~KEGG: tde:TDE0110 M23/M37 peptidase domain-containing protein~PFAM: Peptidase M23~SPTR: M23/M37 peptidase domain protein%3B~IMG reference gene:2504921265~PFAM: Peptidase family M23 gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2341 Trebr_2342 Trebr_2342 Trebr_2342 2759040 2759480 + protein of unknown function DUF583 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination~InterPro IPR007607~KEGG: tde:TDE0111 hypothetical protein~PFAM: Protein of unknown function DUF583~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921266~PFAM: Protein of unknown function%2C DUF583 gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2342 Trebr_2343 Trebr_2343 Trebr_2343 2759467 2760000 + protein of unknown function DUF327 COGs: COG1728 conserved hypothetical protein~InterPro IPR005585~KEGG: tde:TDE0112 hypothetical protein~PFAM: Protein of unknown function DUF327~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921267~PFAM: Protein of unknown function (DUF327) gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2343 Trebr_2344 Trebr_2344 Trebr_2344 2760024 2760956 + PSP1 domain protein COGs: COG1774 Uncharacterized homolog of PSP1~InterPro IPR007557~KEGG: tde:TDE0113 tpl protein~PFAM: PSP1%2C C-terminal~SPTR: Tpl protein%3B~IMG reference gene:2504921268~PFAM: PSP1 C-terminal conserved region gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2344 Trebr_2345 Trebr_2345 Trebr_2345 2761054 2761788 - hypothetical protein KEGG: cce:Ccel_1149 methyltransferase type 11~SPTR: Methyltransferase type 11%3B~IMG reference gene:2504921269~PFAM: Methyltransferase domain gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2345 Trebr_2346 Trebr_2346 Trebr_2346 2761910 2762938 - hypothetical protein IMG reference gene:2504921270 gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2346 Trebr_2347 Trebr_2347 Trebr_2347 2763168 2764565 + multi antimicrobial extrusion protein MatE COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: tde:TDE2475 MATE efflux family protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: MATE efflux family protein%3B~IMG reference gene:2504921271~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2347 Trebr_2348 Trebr_2348 Trebr_2348 2764685 2765812 - aminoglycoside phosphotransferase InterPro IPR002575~KEGG: amu:Amuc_0030 hypothetical protein~PFAM: Aminoglycoside phosphotransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921272~PFAM: Phosphotransferase enzyme family gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2348 Trebr_2349 Trebr_2349 Trebr_2349 2765871 2766818 - transcriptional regulator with cupin sensor%2C AraC family COGs: COG2207 AraC-type DNA-binding domain-containing protein~InterPro IPR018060:IPR013096:IPR000005~KEGG: ere:EUBREC_0132 Ada regulatory protein/6-O-methylguanine-DNA methyltransferase~PFAM: Helix-turn-helix%2C AraC type%3B Cupin 2%2C conserved barrel~SMART: Helix-turn-helix%2C AraC domain~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921273~PFAM: Bacterial regulatory helix-turn-helix proteins%2C AraC family%3B AraC-like ligand binding domain gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2349 Trebr_2350 Trebr_2350 Trebr_2350 2766977 2768359 + carbohydrate ABC transporter substrate-binding protein%2C CPR_0540 family COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: bcq:BCQ_1985 YvdG~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~TIGRFAM: carbohydrate ABC transporter substrate-binding protein%2C CPR_0540 family~IMG reference gene:2504921274~TIGRFAM: carbohydrate ABC transporter substrate-binding protein%2C CPR_0540 family gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2350 Trebr_2351 Trebr_2351 Trebr_2351 2768497 2769399 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: apr:Apre_1667 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Transmembrane permease MsmF%3B~IMG reference gene:2504921275~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2351 Trebr_2352 Trebr_2352 Trebr_2352 2769413 2770321 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: cpy:Cphy_0575 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Carbohydrate ABC transporter membrane protein 2%2C CUT1 family (TC 3.A.1.1.-)%3B~IMG reference gene:2504921276~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2352 Trebr_2353 Trebr_2353 Trebr_2353 2770467 2772626 + hypothetical protein InterPro IPR012711~KEGG: ere:EUBREC_0138 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921277~PFAM: Lacto-N-biose phosphorylase~TIGRFAM: 1%2C3-beta-galactosyl-N-acetylhexosamine phosphorylase gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2353 Trebr_2354 Trebr_2354 Trebr_2354 2772802 2774001 + Radical SAM domain protein COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)~InterPro IPR007197~KEGG: csh:Closa_1923 radical SAM domain protein~PFAM: Radical SAM~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504921278~PFAM: Radical SAM superfamily~TIGRFAM: anaerobic sulfatase-maturating enzyme%3B radical SAM additional 4Fe4S-binding domain gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2354 Trebr_2355 Trebr_2355 Trebr_2355 2774010 2775470 - sulfatase COGs: COG3119 Arylsulfatase A~InterPro IPR000917~KEGG: cpf:CPF_0221 arylsulfatase~PFAM: Sulfatase~SPTR: Arylsulfatase%3B~IMG reference gene:2504921279~PFAM: Sulfatase gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2355 Trebr_2356 Trebr_2356 Trebr_2356 2775613 2776728 + peptidase M29 aminopeptidase II COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T)~InterPro IPR000787~KEGG: gym:GYMC10_1924 peptidase M29 aminopeptidase II~PFAM: Peptidase M29%2C aminopeptidase II~SPTR: Peptidase M29 aminopeptidase II%3B~IMG reference gene:2504921280~PFAM: Thermophilic metalloprotease (M29) gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2356 Trebr_2357 Trebr_2357 Trebr_2357 2776745 2778289 - hypothetical protein KEGG: tde:TDE0081 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921281~PFAM: Mitochondrial small ribosomal subunit Rsm22 gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2357 Trebr_2358 Trebr_2358 Trebr_2358 2778286 2778669 - regulatory protein MerR InterPro IPR000551~KEGG: tde:TDE0082 MerR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR~SPTR: Transcriptional regulator%2C MerR family%3B~IMG reference gene:2504921282~PFAM: MerR family regulatory protein gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2358 Trebr_2359 Trebr_2359 Trebr_2359 2778645 2780138 - GTP-binding protein engA COGs: COG1160 GTPase~HAMAP: GTP-binding%2C EngA~InterPro IPR016484:IPR002917:IPR005225~KEGG: tde:TDE0083 GTP-binding protein EngA~PFAM: GTP-binding protein%2C HSR1-related~SPTR: GTP-binding protein engA%3B~TIGRFAM: GTP-binding%2C EngA%3B Small GTP-binding protein~IMG reference gene:2504921283~PFAM: GTPase of unknown function~TIGRFAM: ribosome-associated GTPase EngA%3B small GTP-binding protein domain gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2359 Trebr_2360 Trebr_2360 Trebr_2360 2780241 2781944 - phosphoenolpyruvate-protein phosphotransferase COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component)~InterPro IPR008731:IPR008279:IPR000121:IPR006318~KEGG: sta:STHERM_c12990 phosphoenolpyruvate-protein phosphotransferase~PFAM: PEP-utilising enzyme%3B Phosphotransferase system%2C PEP-utilising enzyme%2C N-terminal%3B PEP-utilising enzyme%2C mobile region~PRIAM: Phosphoenolpyruvate--protein phosphotransferase~SPTR: Phosphoenolpyruvate-protein phosphotransferase%3B~TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase~IMG reference gene:2504921284~PFAM: PEP-utilising enzyme%2C mobile domain%3B PEP-utilising enzyme%2C TIM barrel domain%3B PEP-utilising enzyme%2C N-terminal~TIGRFAM: phosphoenolpyruvate-protein phosphotransferase gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2360 Trebr_2361 Trebr_2361 Trebr_2361 2782109 2783404 + phosphoribosyl-ATP diphosphatase COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase~InterPro IPR006062:IPR002496:IPR008179~KEGG: kko:Kkor_0859 phosphoribosyl-ATP diphosphatase~PFAM: Histidine biosynthesis%3B Phosphoribosyl-AMP cyclohydrolase%3B Phosphoribosyl-ATP pyrophosphohydrolase~SPTR: Phosphoribosyl-ATP diphosphatase%3B~TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase~IMG reference gene:2504921285~PFAM: Histidine biosynthesis protein%3B Phosphoribosyl-ATP pyrophosphohydrolase%3B Phosphoribosyl-AMP cyclohydrolase~TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2361 Trebr_2362 Trebr_2362 Trebr_2362 2783414 2784733 + Histidinol dehydrogenase COGs: COG0141 Histidinol dehydrogenase~HAMAP: Histidinol dehydrogenase%2C prokaryotic-type~InterPro IPR012131~KEGG: eba:ebA1299 histidinol dehydrogenase~PFAM: Histidinol dehydrogenase%2C prokaryotic-type~PRIAM: Histidinol dehydrogenase~SPTR: Histidinol dehydrogenase%3B~TIGRFAM: Histidinol dehydrogenase%2C prokaryotic-type~IMG reference gene:2504921286~PFAM: Histidinol dehydrogenase~TIGRFAM: histidinol dehydrogenase gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2362 Trebr_2363 Trebr_2363 Trebr_2363 2784728 2785681 - phospholipid/glycerol acyltransferase InterPro IPR002123~KEGG: tde:TDE2222 hypothetical protein~SMART: Phospholipid/glycerol acyltransferase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921287~PFAM: Acyltransferase gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2363 Trebr_2364 Trebr_2364 Trebr_2364 2785694 2786917 + protein of unknown function UPF0118 COGs: COG0628 permease~InterPro IPR002549~KEGG: tde:TDE0336 hypothetical protein~PFAM: Uncharacterised protein family UPF0118~SPTR: Membrane protein%2C putative%3B~IMG reference gene:2504921288~PFAM: Domain of unknown function DUF20 gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2364 Trebr_2365 Trebr_2365 Trebr_2365 2786922 2788643 + YjeF-related protein COGs: COG0063 sugar kinase~InterPro IPR004443:IPR000631~KEGG: hfe:Hfelis_13380 integral membrane protein~PFAM: YjeF-related protein%2C N-terminal%3B Uncharacterised protein family%2C carbohydrate kinase-related~SPTR: Integral membrane protein%3B~TIGRFAM: Uncharacterised protein family%2C carbohydrate kinase-related%3B YjeF-related protein%2C N-terminal~IMG reference gene:2504921289~PFAM: YjeF-related protein N-terminus%3B Carbohydrate kinase~TIGRFAM: yjeF C-terminal region%2C hydroxyethylthiazole kinase-related%3B yjeF N-terminal region gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2365 Trebr_2366 Trebr_2366 Trebr_2366 2788640 2789119 - quorum-sensing autoinducer 2 (AI-2)%2C LuxS COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis~HAMAP: S-ribosylhomocysteinase (LuxS)~InterPro IPR003815~KEGG: bpb:bpr_I0033 S-ribosylhomocysteinase LuxS~PFAM: S-ribosylhomocysteinase (LuxS)~PRIAM: S-ribosylhomocysteine lyase~SPTR: S-ribosylhomocysteine lyase%3B~IMG reference gene:2504921290~PFAM: S-Ribosylhomocysteinase (LuxS) gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2366 Trebr_2367 Trebr_2367 Trebr_2367 2789457 2790692 + Galactokinase COGs: COG0153 Galactokinase~HAMAP: Galactokinase~InterPro IPR019539:IPR006204:IPR013750:IPR000705~KEGG: tde:TDE2212 galactokinase~PFAM: Galactokinase galactose-binding domain%3B GHMP kinase%3B GHMP kinase%2C C-terminal~PRIAM: Galactokinase~SPTR: Galactokinase%3B~TIGRFAM: Galactokinase~IMG reference gene:2504921291~PFAM: Galactokinase galactose-binding signature%3B GHMP kinases C terminal%3B GHMP kinases N terminal domain~TIGRFAM: galactokinase gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2367 Trebr_2368 Trebr_2368 Trebr_2368 2790714 2792219 + Galactose-1-phosphate uridylyltransferase COGs: COG4468 Galactose-1-phosphate uridyltransferase~HAMAP: Galactose-1-phosphate uridylyltransferase~InterPro IPR005849:IPR005850:IPR000766~KEGG: bpb:bpr_I2842 galactose-1-phosphate uridylyltransferase GalT~PFAM: Galactose-1-phosphate uridyl transferase%2C C-terminal%3B Galactose-1-phosphate uridyl transferase%2C N-terminal~PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase~SPTR: Galactose-1-phosphate uridylyltransferase%3B~TIGRFAM: Galactose-1-phosphate uridyl transferase%2C class II~IMG reference gene:2504921292~PFAM: Galactose-1-phosphate uridyl transferase%2C C-terminal domain%3B Galactose-1-phosphate uridyl transferase%2C N-terminal domain~TIGRFAM: galactose-1-phosphate uridylyltransferase%2C family 2 gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2368 Trebr_2369 Trebr_2369 Trebr_2369 2792203 2792655 - NUDIX hydrolase InterPro IPR000086~KEGG: ere:EUBREC_0171 mutator MutT protein~PFAM: NUDIX hydrolase domain~SPTR: NUDIX hydrolase%3B~IMG reference gene:2504921293~PFAM: NUDIX domain~TIGRFAM: mutator mutT protein gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2369 Trebr_2370 Trebr_2370 Trebr_2370 2792829 2796389 - pyruvate ferredoxin/flavodoxin oxidoreductase COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit~InterProIPR002880:IPR019752:IPR019456:IPR001450:IPR 011766:IPR011895~KEGG: tde:TDE0665 pyruvate ferredoxin/flavodoxin oxidoreductase family protein~PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase%2C N-terminal%3B Pyruvate/ketoisovalerate oxidoreductase%3B Pyruvate-flavodoxin oxidoreductase%2C EKR domain%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~PRIAM: Pyruvate dehydrogenase (NADP(+))~SPTR: Pyruvate-flavodoxin oxidoreductase%3B~TIGRFAM: Pyruvate-flavodoxin oxidoreductase~IMG reference gene:2504921294~PFAM: domain%3B Domain of unknown function%3B Pyruvate ferredoxin/flavodoxin oxidoreductase%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP binding domain~TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase%2C homodimeric gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2370 Trebr_2371 Trebr_2371 Trebr_2371 2796600 2799029 + Patatin COGs: COG1752 esterase of the alpha-beta hydrolase superfamily~InterPro IPR002641~KEGG: ssm:Spirs_3807 patatin~PFAM: Patatin~SPTR: Patatin%3B~IMG reference gene:2504921295~PFAM: Patatin-like phospholipase%3B Surface antigen gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2371 Trebr_2372 Trebr_2372 Trebr_2372 2799067 2799972 + ABC transporter related protein COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR003593:IPR003439~KEGG: mil:ML5_0340 abc transporter related protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~IMG reference gene:2504921296~PFAM: ABC transporter gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2372 Trebr_2373 Trebr_2373 Trebr_2373 2800001 2800366 - hypothetical protein IMG reference gene:2504921297 gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2373 Trebr_2374 Trebr_2374 Trebr_2374 2800376 2802130 - Peptidase M30%2C hyicolysin InterPro IPR019501~KEGG: sta:STHERM_c19210 hypothetical protein~PFAM: Peptidase M30%2C hyicolysin~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921298~PFAM: Peptidase M30 gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2374 Trebr_2375 Trebr_2375 Trebr_2375 2802196 2802969 + Ribosomal RNA small subunit methyltransferase E COGs: COG1385 conserved hypothetical protein~InterPro IPR006700~KEGG: ssm:Spirs_4109 protein of unknown function DUF558~PFAM: Ribosomal RNA small subunit methyltransferase E~SPTR: Putative uncharacterized protein%3B~TIGRFAM: Ribosomal RNA small subunit methyltransferase E~IMG reference gene:2504921299~PFAM: RNA methyltransferase~TIGRFAM: RNA methyltransferase%2C RsmE family gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2375 Trebr_2376 Trebr_2376 Trebr_2376 2802988 2803791 + hypothetical protein KEGG: tde:TDE0304 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921300 gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2376 Trebr_2377 Trebr_2377 Trebr_2377 2803778 2804698 + hypothetical protein KEGG: dre:798921 si:ch211-217k17.9~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921301 gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2377 Trebr_2378 Trebr_2378 Trebr_2378 2804745 2805332 + GCN5-related N-acetyltransferase COGs: COG1247 Sortase and related acyltransferase~InterPro IPR000182~KEGG: sli:Slin_3298 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase~SPTR: GCN5-related N-acetyltransferase%3B~IMG reference gene:2504921302~PFAM: Acetyltransferase (GNAT) family gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2378 Trebr_2379 Trebr_2379 Trebr_2379 2805345 2806019 + Ribosomal RNA small subunit methyltransferase G COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division~HAMAP: rRNA small subunit methyltransferase G~InterPro IPR003682~KEGG: tde:TDE2513 glucose-inhibited division protein B~PFAM: rRNA small subunit methyltransferase G~SPTR: Ribosomal RNA small subunit methyltransferase G%3B~TIGRFAM: rRNA small subunit methyltransferase G~IMG reference gene:2504921303~PFAM: rRNA small subunit methyltransferase G~TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2379 Trebr_2380 Trebr_2380 Trebr_2380 2806070 2807485 - restriction endonuclease InterPro IPR019734:IPR013105:IPR001440:IPR007560~KEGG: tpp:TPASS_0915 hypothetical protein~PFAM: Restriction endonuclease%2C type IV-like%2C Mrr%3B Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2~SPTR: TPR domain protein%3B~IMG reference gene:2504921304~PFAM: Restriction endonuclease%3B Tetratricopeptide repeat gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2380 Trebr_2381 Trebr_2381 Trebr_2381 2807604 2809370 + Peptidoglycan-binding lysin domain protein InterPro IPR002482:IPR018392~KEGG: tde:TDE2281 LysM domain-containing protein~PFAM: Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup~SPTR: LysM domain protein%3B~IMG reference gene:2504921305~PFAM: Hsp70 protein%3B LysM domain gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2381 Trebr_2382 Trebr_2382 Trebr_2382 2809379 2811538 + Lytic transglycosylase catalytic COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains)~InterPro IPR008258~KEGG: tpp:TPASS_0043 possible soluble lytic transglycosylase~PFAM: Lytic transglycosylase-like%2C catalytic~SPTR: Soluble lytic transglycosylase%2C putative%3B~IMG reference gene:2504921306~PFAM: Transglycosylase SLT domain gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2382 Trebr_2383 Trebr_2383 Trebr_2383 2811530 2813638 - adenylate/guanylate cyclase with Chase sensor COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain)~InterPro IPR001054:IPR007890~KEGG: tde:TDE0411 adenylate/guanylate cyclase catalytic domain-containing protein~PFAM: CHASE2%3B Adenylyl cyclase class-3/4/guanylyl cyclase~SMART: Adenylyl cyclase class-3/4/guanylyl cyclase~SPTR: Adenylate/guanylate cyclase catalytic domain protein%3B~IMG reference gene:2504921307~PFAM: Adenylate and Guanylate cyclase catalytic domain%3B CHASE2 domain gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2383 Trebr_2384 Trebr_2384 Trebr_2384 2813649 2814533 - peptidase M48 Ste24p COGs: COG4783 Putative Zn-dependent protease contains TPR repeats~InterPro IPR001915~KEGG: tde:TDE0410 M48 family peptidase~PFAM: Peptidase M48%2C Ste24p~SPTR: Peptidase%2C M48 family%3B~IMG reference gene:2504921308~PFAM: Peptidase family M48 gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2384 Trebr_2385 Trebr_2385 Trebr_2385 2814530 2815009 - SH3 domain protein InterPro IPR003646~KEGG: tde:TDE0409 hypothetical protein~SMART: Bacterial SH3-like region~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921309 gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2385 Trebr_2386 Trebr_2386 Trebr_2386 2815109 2816896 + sodium/hydrogen exchanger COGs: COG0475 Kef-type K+ transport systems membrane components~InterPro IPR000644:IPR006153~KEGG: tde:TDE1412 sodium/hydrogen exchanger family protein~PFAM: Cation/H+ exchanger%3B Cystathionine beta-synthase%2C core~SMART: Cystathionine beta-synthase%2C core~SPTR: Sodium/hydrogen exchanger family protein%3B~IMG reference gene:2504921310~PFAM: CBS domain%3B Sodium/hydrogen exchanger family gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2386 Trebr_2387 Trebr_2387 Trebr_2387 2816949 2817743 - protein of unknown function DUF81 InterPro IPR002781~KEGG: cpe:CPE1490 hypothetical protein~PFAM: Protein of unknown function DUF81~SPTR: Putative uncharacterized protein CPE1490%3B~IMG reference gene:2504921311~PFAM: Sulfite exporter TauE/SafE gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2387 Trebr_2388 Trebr_2388 Trebr_2388 2818028 2819263 - phosphofructokinase COGs: COG0205 6-phosphofructokinase~InterPro IPR000023~KEGG: clo:HMPREF0868_0847 phosphofructokinase~PFAM: Phosphofructokinase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921312~PFAM: Phosphofructokinase gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2388 Trebr_2389 Trebr_2389 Trebr_2389 2819327 2820499 - N-acetylglucosamine-6-phosphate deacetylase COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase~InterPro IPR006680:IPR003764~KEGG: tmt:Tmath_0287 N-acetylglucosamine-6-phosphate deacetylase~PFAM: Amidohydrolase 1~PRIAM: N-acetylglucosamine-6-phosphate deacetylase~SPTR: N-acetylglucosamine-6-phosphate deacetylase%3B~TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase~IMG reference gene:2504921313~PFAM: Amidohydrolase family~TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2389 Trebr_2390 Trebr_2390 Trebr_2390 2820640 2820882 - pseudogene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2390 Trebr_2391 Trebr_2391 Trebr_2391 2820952 2821290 - protein of unknown function DUF970 COGs: COG3870 conserved hypothetical protein~InterPro IPR010375~KEGG: cbk:CLL_A0199 protein from nitrogen regulatory protein P-II~PFAM: Protein of unknown function DUF970~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921315~PFAM: Protein of unknown function (DUF970) gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2391 Trebr_2392 Trebr_2392 Trebr_2392 2821406 2822098 - hypothetical protein KEGG: ssm:Spirs_1602 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921316 gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2392 Trebr_2393 Trebr_2393 Trebr_2393 2822095 2822703 - Heptaprenyl diphosphate synthase component I COGs: COG4769 membrane protein~InterPro IPR010898~KEGG: tde:TDE1926 hypothetical protein~PFAM: Heptaprenyl diphosphate synthase component I~SPTR: Putative heptaprenyl diphosphate synthase component I%3B~IMG reference gene:2504921317~PFAM: Heptaprenyl diphosphate synthase component I gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2393 Trebr_2394 Trebr_2394 Trebr_2394 2822867 2824132 + hypothetical protein IMG reference gene:2504921318 gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2394 Trebr_2395 Trebr_2395 Trebr_2395 2824568 2824832 - pseudogene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2395 Trebr_2396 Trebr_2396 Trebr_2396 2824879 2825886 - hypothetical protein IMG reference gene:2504921320 gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2396 Trebr_2397 Trebr_2397 Trebr_2397 2825913 2826473 - NADPH-dependent FMN reductase COGs: COG0655 Multimeric flavodoxin WrbA~InterPro IPR005025~KEGG: bvu:BVU_3545 putative iron-sulfur flavoprotein~PFAM: NADPH-dependent FMN reductase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921321~PFAM: NADPH-dependent FMN reductase gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2397 Trebr_2398 Trebr_2398 Trebr_2398 2826470 2827111 - hypothetical protein KEGG: ssm:Spirs_3341 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921322~PFAM: Predicted periplasmic protein (DUF2271) gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2398 Trebr_2399 Trebr_2399 Trebr_2399 2827108 2827710 - transcriptional regulator%2C TetR family COGs: COG1309 Transcriptional regulator~InterPro IPR001647~KEGG: emi:Emin_0119 TetR family transcriptional regulator~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: Transcriptional regulator%3B~IMG reference gene:2504921323~PFAM: Bacterial regulatory proteins%2C tetR family gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2399 Trebr_2400 Trebr_2400 Trebr_2400 2827896 2830337 - Tex-like protein COGs: COG2183 Transcriptional accessory protein~InterPro IPR006641:IPR018974:IPR003029~KEGG: tde:TDE1012 tex protein%2C putative~PFAM: Tex-like protein%2C N-terminal%3B Ribosomal protein S1%2C RNA binding domain~SMART: Resolvase%2C RNase H-like fold~SPTR: Tex protein%2C putative%3B~IMG reference gene:2504921324~PFAM: Tex-like protein N-terminal domain%3B S1 RNA binding domain~TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2400 Trebr_2401 Trebr_2401 Trebr_2401 2830407 2830571 - hypothetical protein IMG reference gene:2504921325 gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2401 Trebr_2402 Trebr_2402 Trebr_2402 2830568 2831329 - protein of unknown function DUF1113 COGs: COG4905 membrane protein~InterPro IPR010540~KEGG: hypothetical protein~PFAM: Protein of unknown function DUF1113~SPTR: Predicted membrane protein%3B~IMG reference gene:2504921326~PFAM: Protein of unknown function (DUF1113) gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2402 Trebr_2403 Trebr_2403 Trebr_2403 2831520 2832197 - hypothetical protein IMG reference gene:2504921327 gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2403 Trebr_2404 Trebr_2404 Trebr_2404 2832343 2832741 + hypothetical protein KEGG: elm:ELI_0829 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921328 gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2404 Trebr_2405 Trebr_2405 Trebr_2405 2832893 2833480 + hypothetical protein KEGG: tde:TDE1655 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921329 gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2405 Trebr_2406 Trebr_2406 Trebr_2406 2833575 2833994 - hypothetical protein IMG reference gene:2504921330 gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2406 Trebr_2407 Trebr_2407 Trebr_2407 2834100 2836982 - cell wall/surface repeat protein InterPro IPR003961:IPR013378:IPR005077~KEGG: dhd:Dhaf_0489 cell wall/surface repeat protein~PFAM: Peptidase C11%2C clostripain%3B Fibronectin%2C type III%3B Listeria/Bacterioides repeat~SMART: Fibronectin%2C type III~SPTR: Internalin%3B~TIGRFAM: Listeria/Bacterioides repeat~IMG reference gene:2504921331~PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt)%3B Clostripain family%3B Fibronectin type III domain~TIGRFAM: Listeria/Bacterioides repeat gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2407 Trebr_2408 Trebr_2408 Trebr_2408 2837375 2838034 + hypothetical protein IMG reference gene:2504921332 gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2408 Trebr_2409 Trebr_2409 Trebr_2409 2838031 2838582 + GCN5-related N-acetyltransferase InterPro IPR000182~KEGG: mmp:MMP1184 N-acetyltransferase-like protein~PFAM: GCN5-related N-acetyltransferase~SPTR: N-acetyltransferase related protein%3B~IMG reference gene:2504921333~PFAM: Acetyltransferase (GNAT) family gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2409 Trebr_2410 Trebr_2410 Trebr_2410 2838579 2839391 + hypothetical protein KEGG: tde:TDE0620 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921334 gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2410 Trebr_2411 Trebr_2411 Trebr_2411 2839483 2840898 + Aldehyde Dehydrogenase COGs: COG1012 NAD-dependent aldehyde dehydrogenase~InterPro IPR015590~KEGG: ssm:Spirs_0789 aldehyde dehydrogenase~PFAM: Aldehyde dehydrogenase~SPTR: Aldehyde dehydrogenase%3B~IMG reference gene:2504921335~PFAM: Aldehyde dehydrogenase family gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2411 Trebr_2412 Trebr_2412 Trebr_2412 2840917 2841372 + hypothetical protein KEGG: tde:TDE0199 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921336 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2412 Trebr_2413 Trebr_2413 Trebr_2413 2841469 2842329 + flagellin domain protein COGs: COG1344 Flagellin and related hook-associated protein~InterPro IPR001492:IPR001029~KEGG: tpp:TPASS_0792 flagellar filament 33 kDa core protein~PFAM: Flagellin%2C N-terminal%3B Flagellin%2C C-terminal~SPTR: Flagellar filament 33 kDa core protein%3B~IMG reference gene:2504921337~PFAM: Bacterial flagellin N-terminal helical region%3B Bacterial flagellin C-terminal helical region gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2413 Trebr_2414 Trebr_2414 Trebr_2414 2842339 2842926 - Recombination protein recR COGs: COG0353 Recombinational DNA repair protein (RecF pathway)~HAMAP: Recombination protein recR~InterPro IPR006154:IPR015967:IPR006171:IPR000093~KEGG: ssm:Spirs_0086 recombination protein RecR~PFAM: Toprim domain%3B Zinc finger C4-type%2C RecR~SMART: Toprim domain%2C subgroup~SPTR: Recombination protein RecR%3B~TIGRFAM: RecR protein~IMG reference gene:2504921338~PFAM: Toprim domain%3B RecR protein~TIGRFAM: recombination protein RecR gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2414 Trebr_2415 Trebr_2415 Trebr_2415 2842935 2843252 - UPF0133 protein ybaB COGs: COG0718 conserved hypothetical protein~HAMAP: Uncharacterised protein family UPF0133~InterPro IPR004401~KEGG: aar:Acear_0031 hypothetical protein~PFAM: Uncharacterised protein family UPF0133~SPTR: UPF0133 protein TREVI0001_0080%3B~TIGRFAM: Uncharacterised protein family UPF0133~IMG reference gene:2504921339~PFAM: Uncharacterised BCR%2C YbaB family COG0718~TIGRFAM: DNA-binding protein%2C YbaB/EbfC family gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2415 Trebr_2416 Trebr_2416 Trebr_2416 2843249 2845267 - DNA polymerase III%2C subunits gamma and tau COGs: COG2812 DNA polymerase III gamma/tau subunits~InterPro IPR003593:IPR003959:IPR012763~KEGG: tde:TDE2586 DNA polymerase III subunits gamma and tau~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core~SPTR: DNA polymerase III%2C subunits gamma and tau%3B~TIGRFAM: DNA polymerase III%2C subunit gamma/ tau~IMG reference gene:2504921340~PFAM: ATPase family associated with various cellular activities (AAA)%3B DNA polymerase III subunits gamma and tau domain III~TIGRFAM: DNA polymerase III%2C subunit gamma and tau gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2416 Trebr_2417 Trebr_2417 Trebr_2417 2845413 2846054 + hypothetical protein IMG reference gene:2504921341 gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2417 Trebr_2418 Trebr_2418 Trebr_2418 2846091 2848499 - ATP-dependent helicase HrpB COGs: COG1643 HrpA-like helicase~InterProIPR014001:IPR001650:IPR007502:IPR013689:IPR 010225~KEGG: hch:HCH_05855 ATP-dependent helicase HrpB~PFAM: RNA helicase%2C ATP-dependent%2C HrpB type%2C C-terminal%3B DNA/RNA helicase%2C C-terminal%3B Helicase-associated region~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: ATP-dependent helicase HrpB%3B~TIGRFAM: RNA helicase%2C ATP-dependent DEAH box%2C HrpB type~IMG reference gene:2504921342~PFAM: Helicase conserved C-terminal domain%3B ATP-dependent helicase C-terminal%3B DEAD/DEAH box helicase~TIGRFAM: ATP-dependent helicase HrpB gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2418 Trebr_2419 Trebr_2419 Trebr_2419 2848514 2850364 - methyl-accepting chemotaxis sensory transducer COGs: COG0840 Methyl-accepting chemotaxis protein~InterPro IPR003660:IPR004089~KEGG: tde:TDE1386 methyl-accepting chemotaxis protein~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SPTR: Methyl-accepting chemotaxis protein%3B~IMG reference gene:2504921343~PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2419 Trebr_2420 Trebr_2420 Trebr_2420 2850462 2851307 - channel protein%2C hemolysin III family COGs: COG1272 membrane protein hemolysin III homolog~InterPro IPR004254:IPR005744~KEGG: tde:TDE2317 hemolysin III~PFAM: Hly-III related~SPTR: Hemolysin III%3B~TIGRFAM: HylII~IMG reference gene:2504921344~PFAM: Haemolysin-III related~TIGRFAM: channel protein%2C hemolysin III family gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2420 Trebr_2421 Trebr_2421 Trebr_2421 2851443 2852231 - RNA methyltransferase%2C TrmH family%2C group 3 COGs: COG0566 rRNA methylase~InterPro IPR001537:IPR004441~KEGG: tde:TDE1443 RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase%2C SpoU~SPTR: RNA methyltransferase%2C TrmH family%2C group 3%3B~TIGRFAM: RNA methyltransferase TrmH%2C group 3~IMG reference gene:2504921345~PFAM: SpoU rRNA Methylase family~TIGRFAM: rRNA methylase%2C putative%2C group 3 gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2421 Trebr_2422 Trebr_2422 Trebr_2422 2852221 2852721 - SEC-C motif domain protein COGs: COG3012 conserved hypothetical protein~InterPro IPR004027~KEGG: geo:Geob_1085 sec-C motif domain protein~PFAM: SEC-C motif~SPTR: SEC-C motif domain protein%3B~IMG reference gene:2504921346~PFAM: SEC-C motif gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2422 Trebr_2423 Trebr_2423 Trebr_2423 2852798 2853775 - NAD-dependent epimerase/dehydratase COGs: COG0451 Nucleoside-diphosphate-sugar epimerase~InterPro IPR001509~KEGG: ttu:TERTU_1059 NAD-dependent epimerase/dehydratase~PFAM: NAD-dependent epimerase/dehydratase~SPTR: NAD-dependent epimerase/dehydratase%3B~IMG reference gene:2504921347~PFAM: NAD dependent epimerase/dehydratase family gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2423 Trebr_2424 Trebr_2424 Trebr_2424 2853801 2855012 - hypothetical protein KEGG: pmo:Pmob_0347 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921348 gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2424 Trebr_2425 Trebr_2425 Trebr_2425 2855014 2857296 - hypothetical protein SPTR: Putative lipoprotein%3B~IMG reference gene:2504921349 gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2425 Trebr_2426 Trebr_2426 Trebr_2426 2857490 2858122 + hypothetical protein COGs: COG4684 membrane protein~KEGG: hypothetical protein~SPTR: Membrane protein%3B~IMG reference gene:2504921350 gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2426 Trebr_2427 Trebr_2427 Trebr_2427 2858119 2859561 + TrkA-N domain protein COGs: COG0569 K+ transport systems NAD-binding component~InterPro IPR003148:IPR006037~KEGG: tde:TDE0087 potassium transporter peripheral membrane component~PFAM: Regulator of K+ conductance%2C N-terminal%3B Regulator of K+ conductance%2C C-terminal~SPTR: Trk system potassium uptake protein TrkA%3B~IMG reference gene:2504921351~PFAM: TrkA-N domain%3B TrkA-C domain gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2427 Trebr_2428 Trebr_2428 Trebr_2428 2859609 2861030 + cation transporter COGs: COG0168 Trk-type K+ transport systems membrane components~InterPro IPR003445~KEGG: tde:TDE0088 trk system potassium uptake protein TrkH~PFAM: Cation transporter~SPTR: Trk system potassium uptake protein TrkH%3B~IMG reference gene:2504921352~PFAM: Cation transport protein~TIGRFAM: potassium uptake protein%2C TrkH family gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2428 Trebr_2429 Trebr_2429 Trebr_2429 2861105 2862052 + protein of unknown function DUF975 COGs: COG5523 integral membrane protein~InterPro IPR010380~KEGG: bwe:BcerKBAB4_5101 hypothetical protein~PFAM: Protein of unknown function DUF975~SPTR: Predicted integral membrane protein%3B~IMG reference gene:2504921353~PFAM: Protein of unknown function (DUF975) gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2429 Trebr_2430 Trebr_2430 Trebr_2430 2862210 2864198 - Chaperone protein htpG COGs: COG0326 Molecular chaperone HSP90 family~HAMAP: Chaperone protein htpG~InterPro IPR001404:IPR003594:IPR020576~KEGG: tde:TDE2480 heat shock protein 90~PFAM: Heat shock protein Hsp90%2C C-terminal%3B ATP-binding region%2C ATPase-like~SMART: ATP-binding region%2C ATPase-like~SPTR: Chaperone protein htpG%3B~IMG reference gene:2504921354~PFAM: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B Hsp90 protein gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2430 Trebr_2431 Trebr_2431 Trebr_2431 2864290 2865081 - hypothetical protein IMG reference gene:2504921355 gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2431 Trebr_2432 Trebr_2432 Trebr_2432 2865078 2865986 - arginase COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family~InterPro IPR006035:IPR014033~KEGG: aac:Aaci_0321 arginase~PFAM: Ureohydrolase~PRIAM: Arginase~SPTR: Arginase%3B~TIGRFAM: Arginase%2C subgroup~IMG reference gene:2504921356~PFAM: Arginase family~TIGRFAM: arginase gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2432 Trebr_2433 Trebr_2433 Trebr_2433 2866027 2867718 - hypothetical protein KEGG: tde:TDE1234 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921357 gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2433 Trebr_2434 Trebr_2434 Trebr_2434 2867855 2869414 - 5'-nucleotidase COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase~InterPro IPR004843:IPR008334~KEGG: ssm:Spirs_1043 5'-nucleotidase~PFAM: 5'-Nucleotidase%2C C-terminal%3B Metallophosphoesterase~PRIAM: 5'-nucleotidase~SPTR: 5'-nucleotidase%3B~IMG reference gene:2504921358~PFAM: 5'-nucleotidase%2C C-terminal domain%3B Calcineurin-like phosphoesterase gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2434 Trebr_2435 Trebr_2435 Trebr_2435 2869517 2869903 - arsenate reductase like protein COGs: COG1393 Arsenate reductase and related protein glutaredoxin family~InterPro IPR006660~KEGG: ele:Elen_1470 arsenate reductase and related~PFAM: Arsenate reductase-like~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921359~PFAM: ArsC family gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2435 Trebr_2436 Trebr_2436 Trebr_2436 2870156 2871349 + rRNA (guanine-N(2)-)-methyltransferase COGs: COG0116 N6-adenine-specific DNA methylase~InterPro IPR000241~KEGG: tde:TDE0938 hypothetical protein~PFAM: Putative RNA methylase~PRIAM: rRNA (guanine-N(2)-)-methyltransferase~SPTR: RNA methylase family protein%3B~IMG reference gene:2504921360~PFAM: Putative RNA methylase family UPF0020 gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2436 Trebr_2437 Trebr_2437 Trebr_2437 2871333 2871929 + regulatory protein TetR InterPro IPR001647~KEGG: lsp:Bsph_4063 YsiA~PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~SPTR: YsiA%3B~IMG reference gene:2504921361~PFAM: YsiA-like protein%2C C-terminal region%3B Bacterial regulatory proteins%2C tetR family gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2437 Trebr_2438 Trebr_2438 Trebr_2438 2872224 2873384 - hypothetical protein KEGG: bvu:BVU_2383 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921362 gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2438 Trebr_2439 Trebr_2439 Trebr_2439 2874262 2877348 - DEAD/DEAH box helicase domain protein COGs: COG1204 Superfamily II helicase~InterPro IPR014001:IPR001650:IPR011545~KEGG: plm:Plim_1063 DEAD/DEAH box helicase domain protein~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SPTR: Putative DEAD/DEAH box helicase%3B~IMG reference gene:2504921363~PFAM: Helicase conserved C-terminal domain%3B DEAD/DEAH box helicase gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2439 Trebr_2440 Trebr_2440 Trebr_2440 2877338 2878144 - hypothetical protein KEGG: plm:Plim_1064 hypothetical protein~SPTR: Virulence associated protein%3B~IMG reference gene:2504921364 gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2440 Trebr_2441 Trebr_2441 Trebr_2441 2878192 2880132 - protein of unknown function DUF45 COGs: COG1451 metal-dependent hydrolase~InterPro IPR000055:IPR002725~KEGG: apa:APP7_1526 putative restriction-modification enzyme~PFAM: Protein of unknown function DUF45%3B Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~SPTR: Putative phosphoribosylformylglycinamidine synthase%3B~IMG reference gene:2504921365~PFAM: Protein of unknown function DUF45%3B Type I restriction modification DNA specificity domain gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2441 Trebr_2442 Trebr_2442 Trebr_2442 2880132 2881661 - Site-specific DNA-methyltransferase (adenine-specific) COGs: COG0286 Type I restriction-modification system methyltransferase subunit~InterPro IPR003356~KEGG: hsdM%3B type I restriction-modification system%2C M subunit~PFAM: DNA methylase%2C adenine-specific~PRIAM: Site-specific DNA-methyltransferase (adenine-specific)~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921366~PFAM: N-6 DNA Methylase%3B HsdM N-terminal domain gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2442 Trebr_2443 Trebr_2443 Trebr_2443 2881678 2884074 - Type I site-specific deoxyribonuclease COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase~InterPro IPR014001:IPR007409:IPR006935:IPR013670~KEGG: hor:Hore_20230 EcoEI R domain protein~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Restriction endonuclease%2C type I%2C EcoEI%2C R subunit/Type III%2C Res subunit%2C C-terminal~PRIAM: Type I site-specific deoxyribonuclease~SMART: DEAD-like helicase%2C N-terminal~SPTR: Type I site-specific restriction-modification system%2C R (Restriction) subunit and related helicases%3B~IMG reference gene:2504921367~PFAM: Type III restriction enzyme%2C res subunit%3B EcoEI R protein C-terminal gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2443 Trebr_2444 Trebr_2444 Trebr_2444 2884479 2884724 - hypothetical protein IMG reference gene:2504921368 gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2444 Trebr_2445 Trebr_2445 Trebr_2445 2884734 2886452 - hypothetical protein KEGG: ere:EUBREC_0392 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921369 gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2445 Trebr_2446 Trebr_2446 Trebr_2446 2886465 2887208 - ParB domain protein nuclease InterPro IPR003115~KEGG: dat:HRM2_38800 putative plasmid replication/partition related protein ParB~PFAM: ParB-like nuclease~SMART: ParB-like nuclease~SPTR: Putative plasmid replication/partition related protein ParB%3B~IMG reference gene:2504921370~PFAM: ParB-like nuclease domain gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2446 Trebr_2447 Trebr_2447 Trebr_2447 2887283 2887978 - IstB ATP binding domain-containing protein COGs: COG1484 DNA replication protein~KEGG: hha:Hhal_0638 IstB ATP binding domain-containing protein~SPTR: Phage DNA replication protein (Predicted replicative helicase loader)%3B~IMG reference gene:2504921371~PFAM: IstB-like ATP binding protein gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2447 Trebr_2448 Trebr_2448 Trebr_2448 2887990 2888694 - hypothetical protein KEGG: cbt:CLH_1752 phage protein~SPTR: Phage protein%3B~IMG reference gene:2504921372 gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2448 Trebr_2449 Trebr_2449 Trebr_2449 2888675 2888881 - hypothetical protein IMG reference gene:2504921373 gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2449 Trebr_2450 Trebr_2450 Trebr_2450 2888878 2889102 - hypothetical protein IMG reference gene:2504921374~TIGRFAM: DNA binding domain%2C excisionase family gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2450 Trebr_2451 Trebr_2451 Trebr_2451 2889257 2890417 - hypothetical protein IMG reference gene:2504921375 gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2451 Trebr_2452 Trebr_2452 Trebr_2452 2890651 2892315 - putative transcriptional regulator COGs: COG2865 transcriptional regulator protein~InterPro IPR007421~KEGG: bbp:BBPR_0130 DNA-binding protein~PFAM: ATPase associated with various cellular activities%2C AAA-4~SPTR: Putative transcriptional regulator%3B~IMG reference gene:2504921376~PFAM: Divergent AAA domain gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2452 Trebr_2453 Trebr_2453 Trebr_2453 2892425 2893237 - ParB domain protein nuclease InterPro IPR003115~KEGG: dat:HRM2_38800 putative plasmid replication/partition related protein ParB~PFAM: ParB-like nuclease~SMART: ParB-like nuclease~SPTR: Putative plasmid replication/partition related protein ParB%3B~IMG reference gene:2504921377~PFAM: ParB-like nuclease domain gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2453 Trebr_2454 Trebr_2454 Trebr_2454 2893256 2894593 - integrase family protein InterPro IPR002104~KEGG: ssm:Spirs_1738 hypothetical protein~PFAM: Integrase%2C catalytic core%2C phage~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921378~PFAM: Phage integrase family gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2454 Trebr_2455 Trebr_2455 Trebr_2455 2895349 2895831 + hypothetical protein IMG reference gene:2504921381 gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2455 Trebr_2456 Trebr_2456 Trebr_2456 2895824 2896368 + pseudogene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2456 Trebr_2457 Trebr_2457 Trebr_2457 2896610 2896762 + hypothetical protein IMG reference gene:2504921383 gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2457 Trebr_2458 Trebr_2458 Trebr_2458 2896872 2900285 + helicase domain-containing protein InterPro IPR006935:IPR001650:IPR014001~KEGG: kol:Kole_1972 helicase domain protein~PFAM: DNA/RNA helicase%2C C-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~SMART: DNA/RNA helicase%2C C-terminal%3B DEAD-like helicase%2C N-terminal~SPTR: Helicase domain protein%3B~IMG reference gene:2504921384~PFAM: Helicase conserved C-terminal domain%3B SNF2 family N-terminal domain gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2458 Trebr_2459 Trebr_2459 Trebr_2459 2900297 2901706 + putative transcriptional regulator COGs: COG2865 transcriptional regulator protein~InterPro IPR007421~KEGG: ssm:Spirs_4290 putative transcriptional regulator~PFAM: ATPase associated with various cellular activities%2C AAA-4~SPTR: Putative transcriptional regulator%3B~IMG reference gene:2504921385~PFAM: Divergent AAA domain gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2459 Trebr_2460 Trebr_2460 Trebr_2460 2901708 2905082 + type IIS restriction endonuclease%2C putative InterPro IPR011639~KEGG: pgi:PG0862 type IIS restriction endonuclease%2C putative~SPTR: Putative type IIS restriction endonuclease%3B~IMG reference gene:2504921386~PFAM: N-6 DNA Methylase%3B Eco57I restriction endonuclease gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2460 Trebr_2461 Trebr_2461 Trebr_2461 2905079 2905957 - putative type IIS restriction/modification enzyme KEGG: bfr:BF3008 putative type IIS restriction/modification enzyme~SPTR: Eco57I restriction endonuclease%3B~IMG reference gene:2504921387 gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2461 Trebr_2462 Trebr_2462 Trebr_2462 2905959 2906588 - Resolvase domain protein COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs~InterPro IPR006119~KEGG: pgi:PG0864 multiple promoter invertase~PFAM: Resolvase%2C N-terminal~SPTR: Site-specific recombinase%2C resolvase family%3B~IMG reference gene:2504921388~PFAM: Resolvase%2C N terminal domain gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2462 Trebr_2463 Trebr_2463 Trebr_2463 2907736 2908488 - acyl-ACP thioesterase COGs: COG3884 Acyl-ACP thioesterase~InterPro IPR002864~KEGG: gym:GYMC10_0920 acyl-ACP thioesterase~PFAM: Acyl-ACP thioesterase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921389~PFAM: Acyl-ACP thioesterase gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2463 Trebr_2464 Trebr_2464 Trebr_2464 2908564 2909424 - TonB family protein InterPro IPR003538:IPR006260~KEGG: tkm:TK90_0441 TonB family protein~PFAM: Gram-negative bacterial tonB protein~SPTR: TonB family protein%3B~TIGRFAM: TonB%2C C-terminal~IMG reference gene:2504921390~PFAM: Gram-negative bacterial tonB protein~TIGRFAM: TonB family C-terminal domain gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2464 Trebr_2465 Trebr_2465 Trebr_2465 2909442 2911457 - TonB-dependent receptor plug COGs: COG4206 Outer membrane cobalamin receptor protein~InterPro IPR012910:IPR000531~KEGG: ssm:Spirs_1015 TonB-dependent receptor plug~PFAM: TonB-dependent receptor%2C plug%3B TonB-dependent receptor%2C beta-barrel~SPTR: TonB-dependent receptor plug%3B~IMG reference gene:2504921391~PFAM: TonB-dependent Receptor Plug Domain%3B TonB dependent receptor gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2465 Trebr_2466 Trebr_2466 Trebr_2466 2911707 2914295 - Methionine synthase COGs: COG1410 Methionine synthase I cobalamin-binding domain~InterPro IPR003726:IPR000489:IPR003759:IPR006158~KEGG: csh:Closa_2452 homocysteine S-methyltransferase~PFAM: Cobalamin (vitamin B12)-binding%3B Homocysteine S-methyltransferase%3B Dihydropteroate synthase%2C DHPS%3B Methionine synthase%2C cobalamin (vitamin B12)-binding module%2C cap~PRIAM: Methionine synthase~SPTR: Homocysteine S-methyltransferase%3B~IMG reference gene:2504921392~PFAM: Pterin binding enzyme%3B B12 binding domain%3B Homocysteine S-methyltransferase gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2466 Trebr_2467 Trebr_2467 Trebr_2467 2914540 2914896 - helix-turn-helix domain protein InterPro IPR001387~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~IMG reference gene:2504921393~PFAM: Helix-turn-helix gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2467 Trebr_2468 Trebr_2468 Trebr_2468 2915001 2915405 + hypothetical protein IMG reference gene:2504921394 gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2468 Trebr_2469 Trebr_2469 Trebr_2469 2915425 2916351 + glycosyl transferase family 2 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis~InterPro IPR001173~KEGG: lrf:LAR_1295 glycosyltransferase~PFAM: Glycosyl transferase%2C family 2~SPTR: Glycosyl transferase family 2%3B~IMG reference gene:2504921395~PFAM: Glycosyl transferase family 2 gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2469 Trebr_2470 Trebr_2470 Trebr_2470 2916348 2917646 + hypothetical protein KEGG: cbk:CLL_A3245 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921396 gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2470 Trebr_2471 Trebr_2471 Trebr_2471 2918200 2918625 + hypothetical protein InterPro IPR019004~KEGG: nam:NAMH_0846 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921397~PFAM: Yqey-like protein gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2471 Trebr_2472 Trebr_2472 Trebr_2472 2918821 2919630 - transcriptional regulator%2C MerR family COGs: COG0789 transcriptional regulator protein~InterPro IPR000551:IPR010499~KEGG: mla:Mlab_0010 hypothetical protein~PFAM: HTH transcriptional regulator%2C MerR%3B Bacterial transcription activator%2C effector binding~SMART: HTH transcriptional regulator%2C MerR~SPTR: Transcription activator effector binding%3B~IMG reference gene:2504921398~PFAM: MerR family regulatory protein%3B Bacterial transcription activator%2C effector binding domain gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2472 Trebr_2473 Trebr_2473 Trebr_2473 2919633 2919998 - hypothetical protein KEGG: rci:RCIX1720 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921399 gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2473 Trebr_2474 Trebr_2474 Trebr_2474 2920205 2920927 - ABC-2 type transporter InterPro IPR013525~KEGG: dhd:Dhaf_3151 ABC-2 type transporter~PFAM: ABC-2 type transporter~SPTR: ABC-2 type transporter%3B~IMG reference gene:2504921400~PFAM: ABC-2 type transporter gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2474 Trebr_2475 Trebr_2475 Trebr_2475 2920924 2921715 - Phosphonate-transporting ATPase COGs: COG1131 ABC-type multidrug transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: elm:ELI_4477 hypothetical protein~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter%2C ATP-binding protein%3B~IMG reference gene:2504921401~PFAM: ABC transporter gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2475 Trebr_2476 Trebr_2476 Trebr_2476 2921795 2922526 - Vitamin B12 dependent methionine synthase activation region InterPro IPR004223~KEGG: csh:Closa_2453 vitamin B12 dependent methionine synthase activation region~PFAM: Vitamin B12 dependent methionine synthase%2C activation region~SPTR: Putative 5-methyltetrahydrofolate--homocysteine methyltransferase%3B~IMG reference gene:2504921402~PFAM: Vitamin B12 dependent methionine synthase%2C activation domain gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2476 Trebr_2477 Trebr_2477 Trebr_2477 2922585 2923457 + ABC-type transporter%2C periplasmic subunit COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component~InterPro IPR002491~KEGG: dau:Daud_1317 periplasmic binding protein~PFAM: Periplasmic binding protein~SPTR: Periplasmic binding protein%3B~IMG reference gene:2504921403~PFAM: Periplasmic binding protein gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2477 Trebr_2478 Trebr_2478 Trebr_2478 2923454 2924545 + ABC-type transporter%2C integral membrane subunit COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component~InterPro IPR000522~KEGG: dau:Daud_1316 transport system permease protein~PFAM: Bacterial transport system permease protein~SPTR: ABC-type cobalamin/Fe3+-siderophores transport system%2C permease component%3B~IMG reference gene:2504921404~PFAM: FecCD transport family gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2478 Trebr_2479 Trebr_2479 Trebr_2479 2924538 2925368 + Iron-chelate-transporting ATPase COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components~InterPro IPR003439:IPR003593~KEGG: dau:Daud_1315 ABC transporter related~PFAM: ABC transporter-like~PRIAM: Iron-chelate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related%3B~IMG reference gene:2504921405~PFAM: ABC transporter gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2479 Trebr_2480 Trebr_2480 Trebr_2480 2925623 2926675 + ROK family protein COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000600~KEGG: ppm:PPSC2_c2828 transcriptional regulator~PFAM: ROK~SPTR: Transcriptional regulator%3B~IMG reference gene:2504921406~PFAM: ROK family gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2480 Trebr_2481 Trebr_2481 Trebr_2481 2926678 2927886 + major facilitator superfamily MFS_1 COGs: COG0738 Fucose permease~InterPro IPR011701~KEGG: major facilitator superfamily MFS_1~PFAM: Major facilitator superfamily MFS-1~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921407~PFAM: Major Facilitator Superfamily gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2481 Trebr_2482 Trebr_2482 Trebr_2482 2928033 2929496 - two component transcriptional regulator%2C AraC family COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789:IPR000005:IPR018060~KEGG: ckn:Calkro_0071 two component transcriptional regulator%2C AraC family~PFAM: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C AraC type~SMART: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C AraC domain~SPTR: Two component transcriptional regulator%2C AraC family%3B~IMG reference gene:2504921408~PFAM: Response regulator receiver domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2482 Trebr_2483 Trebr_2483 Trebr_2483 2929493 2931439 - integral membrane sensor signal transduction histidine kinase COGs: COG2972 signal transduction protein with a C-terminal ATPase domain~InterPro IPR003660:IPR010559:IPR003594~KEGG: ckn:Calkro_0070 integral membrane sensor signal transduction histidine kinase~PFAM: Signal transduction histidine kinase%2C internal region%3B HAMP linker domain%3B ATP-binding region%2C ATPase-like~SMART: HAMP linker domain%3B ATP-binding region%2C ATPase-like~SPTR: Integral membrane sensor signal transduction histidine kinase%3B~IMG reference gene:2504921409~PFAM: Histidine kinase%3B HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2483 Trebr_2484 Trebr_2484 Trebr_2484 2931499 2933139 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: gym:GYMC10_0541 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504921410~PFAM: Bacterial extracellular solute-binding protein gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2484 Trebr_2485 Trebr_2485 Trebr_2485 2933160 2934071 - ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: chd:Calhy_0056 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504921411~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2485 Trebr_2486 Trebr_2486 Trebr_2486 2934144 2935121 - ABC-type transporter%2C integral membrane subunit COGs: COG4209 ABC-type polysaccharide transport system permease component~InterPro IPR000515~KEGG: gym:GYMC10_0539 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504921412~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2486 Trebr_2487 Trebr_2487 Trebr_2487 2935304 2938840 + hypothetical protein KEGG: fbc:FB2170_09196 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921413 gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2487 Trebr_2488 Trebr_2488 Trebr_2488 2938818 2940254 + Glucosylceramidase COGs: COG5520 O-Glycosyl hydrolase~InterPro IPR001139~KEGG: glucosylceramidase~PFAM: Glycoside hydrolase%2C family 30~PRIAM: Glucosylceramidase~SPTR: Glucosylceramidase%3B~IMG reference gene:2504921414~PFAM: O-Glycosyl hydrolase family 30 gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2488 Trebr_2489 Trebr_2489 Trebr_2489 2940453 2942513 + Radical SAM domain protein COGs: COG1032 Fe-S oxidoreductase~InterPro IPR013704:IPR007197:IPR006638~KEGG: nth:Nther_2132 hypothetical protein~PFAM: Radical SAM N-terminal%3B Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: UPF0313 protein CLCAR_1156/CcarbDRAFT_4186%3B~IMG reference gene:2504921415~PFAM: Domain of unknown function (DUF3362)%3B Radical SAM superfamily%3B Radical SAM N-terminal~TIGRFAM: uncharacterized radical SAM protein YgiQ gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2489 Trebr_2490 Trebr_2490 Trebr_2490 2942510 2944390 + Radical SAM domain protein COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase~InterPro IPR007197:IPR006638~KEGG: geo:Geob_3685 radical SAM domain protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB~SPTR: Radical SAM domain protein%3B~IMG reference gene:2504921416~PFAM: Radical SAM superfamily%3B B12 binding domain gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2490 Trebr_2491 Trebr_2491 Trebr_2491 2944380 2945381 - hypothetical protein COGs: COG4571 Outer membrane protease~KEGG: sta:STHERM_c03080 hypothetical protein~SPTR: Hypothetical membrane protein%3B~IMG reference gene:2504921417~PFAM: Omptin family gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2491 Trebr_2492 Trebr_2492 Trebr_2492 2945391 2947010 - phospholipase D/Transphosphatidylase COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase~InterPro IPR001736~KEGG: cpr:CPR_0345 cardiolipin synthetase~PFAM: Phospholipase D/Transphosphatidylase~SMART: Phospholipase D/Transphosphatidylase~SPTR: Cardiolipin synthetase family protein%3B~IMG reference gene:2504921418~PFAM: Phospholipase D Active site motif gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2492 Trebr_2493 Trebr_2493 Trebr_2493 2947245 2948909 + hypothetical protein KEGG: tde:TDE2751 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921419 gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2493 Trebr_2494 Trebr_2494 Trebr_2494 2948975 2949247 - leader peptide processing enzyme KEGG: ssm:Spirs_0324 leader peptide processing enzyme~SPTR: Leader peptide processing enzyme%3B~IMG reference gene:2504921420 gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2494 Trebr_2495 Trebr_2495 Trebr_2495 2949251 2949823 - Lipoprotein signal peptidase COGs: COG0597 Lipoprotein signal peptidase~HAMAP: Peptidase A8%2C signal peptidase II~InterPro IPR001872~KEGG: sta:STHERM_c21430 signal peptidase II~PFAM: Peptidase A8%2C signal peptidase II~SPTR: Lipoprotein signal peptidase%3B~TIGRFAM: Peptidase A8%2C signal peptidase II~IMG reference gene:2504921421~PFAM: Signal peptidase (SPase) II~TIGRFAM: lipoprotein signal peptidase gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2495 Trebr_2496 Trebr_2496 Trebr_2496 2949896 2950663 - NGG1p interacting factor 3 protein%2C NIF3 COGs: COG0327 conserved hypothetical protein~InterPro IPR002678~KEGG: tde:TDE2208 hypothetical protein~PFAM: NGG1p interacting factor 3%2C NIF3~SPTR: Putative uncharacterized protein%3B~TIGRFAM: NGG1p interacting factor 3%2C NIF3~IMG reference gene:2504921422~PFAM: NIF3 (NGG1p interacting factor 3)~TIGRFAM: dinuclear metal center protein%2C YbgI/SA1388 family gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2496 Trebr_2497 Trebr_2497 Trebr_2497 2950660 2951913 - hypothetical protein IMG reference gene:2504921423 gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2497 Trebr_2498 Trebr_2498 Trebr_2498 2952038 2953555 + putative signal transduction protein COGs: COG1639 signal transduction protein~InterPro IPR013976:IPR006675~KEGG: ssm:Spirs_0320 metal dependent phosphohydrolase~PFAM: Metal-dependent hydrolase HDOD~SPTR: Metal dependent phosphohydrolase%3B~TIGRFAM: HDIG~IMG reference gene:2504921424~PFAM: HDOD domain~TIGRFAM: uncharacterized domain HDIG gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2498 Trebr_2499 Trebr_2499 Trebr_2499 2953613 2954434 - tRNA/rRNA methyltransferase (SpoU) COGs: COG0566 rRNA methylase~InterPro IPR001537~KEGG: tde:TDE0050 RNA methyltransferase~PFAM: tRNA/rRNA methyltransferase%2C SpoU~SPTR: RNA methyltransferase%2C TrmH family%3B~IMG reference gene:2504921425~PFAM: SpoU rRNA Methylase family gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2499 Trebr_2500 Trebr_2500 Trebr_2500 2954436 2955584 - iron-containing alcohol dehydrogenase COGs: COG1454 Alcohol dehydrogenase class IV~InterPro IPR001670~KEGG: tde:TDE0051 alcohol dehydrogenase%2C iron-containing~PFAM: Alcohol dehydrogenase%2C iron-type~SPTR: Alcohol dehydrogenase%2C iron-containing%3B~IMG reference gene:2504921426~PFAM: Iron-containing alcohol dehydrogenase gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2500 Trebr_2501 Trebr_2501 Trebr_2501 2955674 2955961 - flagellar biosynthesis anti-sigma factor protein FlgM InterPro IPR007412~KEGG: tde:TDE0201 hypothetical protein~PFAM: Anti-sigma-28 factor%2C FlgM~SPTR: Anti-sigma-28 factor%2C FlgM%3B~TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM~IMG reference gene:2504921427~PFAM: Anti-sigma-28 factor%2C FlgM gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2501 Trebr_2502 Trebr_2502 Trebr_2502 2955951 2956685 - Ribosomal RNA small subunit methyltransferase I COGs: COG0313 methyltransferase~HAMAP: Ribosomal RNA small subunit methyltransferase I~InterPro IPR000878:IPR008189~KEGG: tde:TDE0200 tetrapyrrole methylase family protein~PFAM: Tetrapyrrole methylase~SPTR: Ribosomal RNA small subunit methyltransferase I%3B~TIGRFAM: Uncharacterised protein family UPF0011~IMG reference gene:2504921428~PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases~TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase%2C YraL family gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2502 Trebr_2503 Trebr_2503 Trebr_2503 2956837 2957838 - hypothetical protein COGs: COG1073 Hydrolase of the alpha/beta superfamily~KEGG: cpf:CPF_1158 hypothetical protein~SPTR: X-Pro dipeptidyl-peptidase (S15 family)%3B~IMG reference gene:2504921429 gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2503 Trebr_2504 Trebr_2504 Trebr_2504 2957872 2958597 - hypothetical protein KEGG: tde:TDE1322 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921430 gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2504 Trebr_2505 Trebr_2505 Trebr_2505 2958670 2959422 - hypothetical protein KEGG: tde:TDE1322 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921431 gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2505 Trebr_2506 Trebr_2506 Trebr_2506 2959942 2960496 + hypothetical protein IMG reference gene:2504921432 gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2506 Trebr_2507 Trebr_2507 Trebr_2507 2960483 2961238 + regulatory protein LuxR InterPro IPR000792~PFAM: Transcription regulator LuxR%2C C-terminal~IMG reference gene:2504921433~PFAM: Bacterial regulatory proteins%2C luxR family gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2507 Trebr_2508 Trebr_2508 Trebr_2508 2961245 2962228 - hypothetical protein IMG reference gene:2504921434 gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2508 Trebr_2509 Trebr_2509 Trebr_2509 2962567 2964897 - Peptidoglycan glycosyltransferase COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC~InterPro IPR001264:IPR001460:IPR009647~KEGG: ssm:Spirs_1458 peptidoglycan glycosyltransferase~PFAM: Glycosyl transferase%2C family 51%3B Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding%2C C-terminal~PRIAM: Peptidoglycan glycosyltransferase~SPTR: Penicillin-binding protein 1C%3B~IMG reference gene:2504921435~PFAM: Penicillin-Binding Protein C-terminus Family%3B Penicillin binding protein transpeptidase domain%3B Transglycosylase~TIGRFAM: penicillin-binding protein 1C gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2509 Trebr_2510 Trebr_2510 Trebr_2510 2964878 2970904 - alpha-2-macroglobulin domain protein 2 COGs: COG2373 Large extracellular alpha-helical protein~InterPro IPR002890:IPR011625:IPR001599~KEGG: ssm:Spirs_1457 alpha-2-macroglobulin domain protein 2~PFAM: Alpha-2-macroglobulin%2C N-terminal 2%3B Alpha-2-macroglobulin%2C N-terminal%3B Alpha-2-macroglobulin~SPTR: Alpha-2-macroglobulin family N-region%3B~IMG reference gene:2504921436~PFAM: Alpha-2-macroglobulin family%3B MG2 domain%3B Alpha-2-macroglobulin MG1 domain%3B Alpha-2-macroglobulin family N-terminal region gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2510 Trebr_2511 Trebr_2511 Trebr_2511 2970986 2971918 - Undecaprenyl-diphosphatase COGs: COG1968 Uncharacterized bacitracin resistance protein~HAMAP: Undecaprenyl-diphosphatase~InterPro IPR003824~KEGG: tde:TDE0172 undecaprenyl pyrophosphate phosphatase~PFAM: Bacitracin resistance protein BacA~SPTR: Undecaprenyl-diphosphatase%3B~IMG reference gene:2504921437~PFAM: Bacitracin resistance protein BacA gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2511 Trebr_2512 Trebr_2512 Trebr_2512 2972121 2972297 + hypothetical protein KEGG: chy:CHY_1707 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921438 gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2512 Trebr_2513 Trebr_2513 Trebr_2513 2972368 2973279 + hypothetical protein KEGG: sta:STHERM_c11560 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921439 gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2513 Trebr_2514 Trebr_2514 Trebr_2514 2973337 2974929 - Hydroxylamine reductase COGs: COG1151 6Fe-6S prismane cluster-containing protein~HAMAP: Hybrid cluster protein~InterPro IPR004137:IPR010048~KEGG: csh:Closa_2549 hybrid cluster protein~PFAM: Prismane~SPTR: Hydroxylamine reductase%3B~TIGRFAM: Hybrid cluster protein~IMG reference gene:2504921440~PFAM: Prismane/CO dehydrogenase family~TIGRFAM: hydroxylamine reductase gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2514 Trebr_2515 Trebr_2515 Trebr_2515 2974994 2975737 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein InterPro IPR001450~KEGG: 4Fe-4S ferredoxin%2C iron-sulfur binding protein~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: 4Fe-4S ferredoxin%2C iron-sulfur binding protein%3B~IMG reference gene:2504921441 gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2515 Trebr_2516 Trebr_2516 Trebr_2516 2975830 2976510 + transcriptional regulator%2C Crp/Fnr family COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase~InterPro IPR000595~KEGG: afn:Acfer_1732 transcriptional regulator%2C Crp/Fnr family~PFAM: Cyclic nucleotide-binding~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921442~PFAM: Cyclic nucleotide-binding domain gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2516 Trebr_2517 Trebr_2517 Trebr_2517 2976649 2977308 + Orotate phosphoribosyltransferase COGs: COG0461 Orotate phosphoribosyltransferase~HAMAP: Orotate phosphoribosyltransferase~InterPro IPR000836:IPR004467~KEGG: orotate phosphoribosyltransferase~PFAM: Phosphoribosyltransferase~PRIAM: Orotate phosphoribosyltransferase~SPTR: Orotate phosphoribosyltransferase%3B~TIGRFAM: Orotate phosphoribosyl transferase~IMG reference gene:2504921443~PFAM: Phosphoribosyl transferase domain~TIGRFAM: orotate phosphoribosyltransferase gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2517 Trebr_2518 Trebr_2518 Trebr_2518 2977370 2978356 - FMN-dependent alpha-hydroxy acid dehydrogenase COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase~InterPro IPR000262~KEGG: tpp:TPASS_0291 hypothetical protein~PFAM: FMN-dependent dehydrogenase~SPTR: FMN-dependent dehydrogenase family protein%3B~IMG reference gene:2504921444~PFAM: FMN-dependent dehydrogenase gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2518 Trebr_2519 Trebr_2519 Trebr_2519 2978341 2979426 - 6-phosphofructokinase COGs: COG0205 6-phosphofructokinase~HAMAP: 6-phosphofructokinase~InterPro IPR000023~KEGG: sta:STHERM_c00290 6-phosphofructokinase 3~PFAM: Phosphofructokinase~PRIAM: 6-phosphofructokinase~SPTR: 6-phosphofructokinase%3B~IMG reference gene:2504921445~PFAM: Phosphofructokinase~TIGRFAM: phosphofructokinase gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2519 Trebr_2520 Trebr_2520 Trebr_2520 2979573 2980745 - biotin/acetyl-CoA-carboxylase ligase COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase~InterPro IPR013196:IPR004143:IPR003142:IPR004408~KEGG: tde:TDE0041 BirA bifunctional protein~PFAM: Biotin/lipoate A/B protein ligase%3B Helix-turn-helix%2C type 11%3B Biotin protein ligase%2C C-terminal~SPTR: BirA bifunctional protein%3B~TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase~IMG reference gene:2504921446~PFAM: HTH domain%3B Biotin/lipoate A/B protein ligase family~TIGRFAM: BirA biotin operon repressor domain%3B birA%2C biotin-[acetyl-CoA-carboxylase] ligase region gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2520 Trebr_2521 Trebr_2521 Trebr_2521 2980742 2981404 - hypothetical protein KEGG: cpy:Cphy_2614 nitrogen regulatory protein P-II~SPTR: Regulatory protein%2C P-II family%3B~IMG reference gene:2504921447 gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2521 Trebr_2522 Trebr_2522 Trebr_2522 2981401 2982885 - protein of unknown function DUF1538 InterPro IPR011435~KEGG: aoe:Clos_0656 hypothetical protein~PFAM: Protein of unknown function DUF1538~SPTR: Putative membrane protein%3B~IMG reference gene:2504921448~PFAM: Protein of unknown function (DUF1538) gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2522 Trebr_2523 Trebr_2523 Trebr_2523 2982896 2983591 - MTA/SAH nucleosidase COGs: COG0775 Nucleoside phosphorylase~InterPro IPR000845:IPR010049~KEGG: csh:Closa_0055 MTA/SAH nucleosidase~PFAM: Nucleoside phosphorylase~PRIAM: Adenosylhomocysteine nucleosidase~SPTR: MTA/SAH nucleosidase%3B~TIGRFAM: MTA/SAH nucleosidase~IMG reference gene:2504921449~PFAM: Phosphorylase superfamily~TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2523 Trebr_2524 Trebr_2524 Trebr_2524 2983816 2985012 - hypothetical protein COGs: COG2267 Lysophospholipase~KEGG: ccb:Clocel_2090 alpha/beta hydrolase fold~SPTR: Alpha/beta hydrolase fold%3B~IMG reference gene:2504921450~PFAM: Putative lysophospholipase gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2524 Trebr_2525 Trebr_2525 Trebr_2525 2985424 2986107 + peptidase membrane zinc metallopeptidase COGs: COG2738 Zn-dependent protease~InterPro IPR007395~KEGG: tde:TDE2163 hypothetical protein~PFAM: Peptidase%2C membrane zinc metallopeptidase%2C putative~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921451~PFAM: Putative neutral zinc metallopeptidase gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2525 Trebr_2526 Trebr_2526 Trebr_2526 2986301 2987608 + extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: ssm:Spirs_1368 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Extracellular solute-binding protein family 1%3B~IMG reference gene:2504921452~PFAM: Bacterial extracellular solute-binding protein gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2526 Trebr_2527 Trebr_2527 Trebr_2527 2987721 2988632 + ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: ssm:Spirs_1367 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504921453~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2527 Trebr_2528 Trebr_2528 Trebr_2528 2988701 2989567 + ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: ssm:Spirs_3220 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Binding-protein-dependent transport systems inner membrane component%3B~IMG reference gene:2504921454~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2528 Trebr_2529 Trebr_2529 Trebr_2529 2989680 2990306 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 COGs: COG1011 hydrolase (HAD superfamily)~InterPro IPR005834:IPR006402~KEGG: tle:Tlet_2032 HAD family hydrolase~PFAM: Haloacid dehalogenase-like hydrolase~SPTR: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~IMG reference gene:2504921455~PFAM: haloacid dehalogenase-like hydrolase~TIGRFAM: haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2529 Trebr_2530 Trebr_2530 Trebr_2530 2990327 2991373 + extracellular solute-binding protein family 1 COGs: COG1840 ABC-type Fe3+ transport system periplasmic component~InterPro IPR006059~KEGG: sth:STH1157 iron ABC transporter substrate-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Iron ABC transporter substrate-binding protein%3B~IMG reference gene:2504921456~PFAM: Bacterial extracellular solute-binding protein gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2530 Trebr_2531 Trebr_2531 Trebr_2531 2991427 2992239 - two component transcriptional regulator%2C AraC family COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain~InterPro IPR001789:IPR000005:IPR018060~KEGG: csh:Closa_2526 two component transcriptional regulator%2C AraC family~PFAM: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C AraC type~SMART: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C AraC domain~SPTR: Two component transcriptional regulator%2C AraC family%3B~IMG reference gene:2504921457~PFAM: Response regulator receiver domain%3B Bacterial regulatory helix-turn-helix proteins%2C AraC family gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2531 Trebr_2532 Trebr_2532 Trebr_2532 2992236 2994146 - integral membrane sensor signal transduction histidine kinase COGs: COG2972 signal transduction protein with a C-terminal ATPase domain~InterPro IPR003660:IPR010559:IPR003594~KEGG: ssm:Spirs_1363 integral membrane sensor signal transduction histidine kinase~PFAM: Signal transduction histidine kinase%2C internal region%3B HAMP linker domain%3B ATP-binding region%2C ATPase-like~SMART: HAMP linker domain%3B ATP-binding region%2C ATPase-like~SPTR: Two-component sensor histidine kinase%3B~IMG reference gene:2504921458~PFAM: Histidine kinase%3B HAMP domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2532 Trebr_2533 Trebr_2533 Trebr_2533 2994286 2994711 + regulatory protein MarR InterPro IPR000835~KEGG: ols:Olsu_1650 transcriptional regulator%2C MarR family~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921459~PFAM: MarR family gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2533 Trebr_2534 Trebr_2534 Trebr_2534 2994809 2996140 + multi antimicrobial extrusion protein MatE COGs: COG0534 Na+-driven multidrug efflux pump~InterPro IPR002528~KEGG: eel:EUBELI_01492 hypothetical protein~PFAM: Multi antimicrobial extrusion protein MatE~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921460~PFAM: MatE~TIGRFAM: putative efflux protein%2C MATE family gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2534 Trebr_2535 Trebr_2535 Trebr_2535 2996396 2996758 + hypothetical cytosolic protein KEGG: elm:ELI_2299 hypothetical cytosolic protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921461 gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2535 Trebr_2536 Trebr_2536 Trebr_2536 2996891 2997724 - acetyl esterase COGs: COG0657 Esterase/lipase~KEGG: cpy:Cphy_3014 acetyl esterase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921462~PFAM: alpha/beta hydrolase fold gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2536 Trebr_2537 Trebr_2537 Trebr_2537 2997913 2999130 + metal dependent phosphohydrolase COGs: COG2206 HD-GYP domain~InterPro IPR006674:IPR003607~KEGG: eel:EUBELI_20098 putative two-component system response regulator~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain~SPTR: Putative two-component system response regulator%3B~IMG reference gene:2504921463~PFAM: HD domain gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2537 Trebr_2538 Trebr_2538 Trebr_2538 2999313 3001229 + peptidase M3A and M3B thimet/oligopeptidase F COGs: COG1164 Oligoendopeptidase F~InterPro IPR013647:IPR001567~KEGG: tde:TDE2001 oligoendopeptidase F%2C putative~PFAM: Peptidase M3A/M3B%2C thimet/oligopeptidase F%3B Peptidase M3B%2C oligopeptidase F%2C N-terminal~SPTR: Oligoendopeptidase F%2C putative%3B~IMG reference gene:2504921464~PFAM: Oligopeptidase F%3B Peptidase family M3~TIGRFAM: oligoendopeptidase%2C pepF/M3 family gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2538 Trebr_2539 Trebr_2539 Trebr_2539 3001242 3002156 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein COGs: COG0348 Polyferredoxin~InterPro IPR001450~KEGG: mae:Maeo_0832 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B~IMG reference gene:2504921465 gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2539 Trebr_2540 Trebr_2540 Trebr_2540 3002153 3003040 + UBA/THIF-type NAD/FAD binding protein COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1~InterPro IPR000594~KEGG: UBA/ThiF-type NAD/FAD-binding protein~PFAM: UBA/THIF-type NAD/FAD binding fold~SPTR: ThiF family protein%3B~IMG reference gene:2504921466~PFAM: ThiF family gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2540 Trebr_2541 Trebr_2541 Trebr_2541 3003383 3004258 + tetracycline resistance leader peptide KEGG: afn:Acfer_1503 tetracycline resistance leader peptide~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921467~TIGRFAM: conserved hypothetical protein (putative transposase or invertase) gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2541 Trebr_2542 Trebr_2542 Trebr_2542 3004334 3004528 - hypothetical protein IMG reference gene:2504921468 gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2542 Trebr_2543 Trebr_2543 Trebr_2543 3004656 3004985 + helix-turn-helix domain protein InterPro IPR001387~KEGG: ssm:Spirs_2779 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: Transcriptional regulator%2C XRE family%3B~IMG reference gene:2504921469~PFAM: Helix-turn-helix gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2543 Trebr_2544 Trebr_2544 Trebr_2544 3005036 3005188 + pseudogene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2544 Trebr_2545 Trebr_2545 Trebr_2545 3005294 3006250 - Glucokinase COGs: COG1940 Transcriptional regulator/sugar kinase~InterPro IPR000600~KEGG: ROK family protein~PFAM: ROK~PRIAM: Glucokinase~SPTR: ROK family protein%3B~manually curated~IMG reference gene:2504921471~PFAM: ROK family~TIGRFAM: ROK family protein (putative glucokinase) gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2545 Trebr_2546 Trebr_2546 Trebr_2546 3006353 3007135 + Copper homeostasis protein cutC COGs: COG3142 Uncharacterized protein involved in copper resistance~HAMAP: Copper homeostasis protein cutC~InterPro IPR005627~KEGG: csh:Closa_2248 CutC family protein~PFAM: CutC~SPTR: Uncharacterized protein involved in copper resistance%3B~IMG reference gene:2504921472~PFAM: CutC family gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2546 Trebr_2547 Trebr_2547 Trebr_2547 3007184 3008050 - transcriptional regulator%2C LysR family COGs: COG0583 Transcriptional regulator~InterPro IPR000847:IPR005119~KEGG: cst:CLOST_1867 hypothetical protein~PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921473~PFAM: Bacterial regulatory helix-turn-helix protein%2C lysR family%3B LysR substrate binding domain gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2547 Trebr_2548 Trebr_2548 Trebr_2548 3008120 3009259 + pseudogene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2548 Trebr_2549 Trebr_2549 Trebr_2549 3009395 3010417 - PfkB domain protein COGs: COG0524 Sugar kinase ribokinase family~InterPro IPR011611~KEGG: bpb:bpr_I0932 2-dehydro-3-deoxygluconokinase KdgK~PFAM: Carbohydrate/purine kinase~SPTR: KHG/KDPG family aldolase/carbohydrate kinase%2C PfkB family%3B~IMG reference gene:2504921475~PFAM: pfkB family carbohydrate kinase gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2549 Trebr_2550 Trebr_2550 Trebr_2550 3010707 3012056 - Polygalacturonase COGs: COG5434 Endopygalactorunase~InterPro IPR000743:IPR006626~KEGG: sta:STHERM_c04310 hypothetical protein~PFAM: Glycoside hydrolase%2C family 28~PRIAM: Polygalacturonase~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921476~PFAM: Glycosyl hydrolases family 28 gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2550 Trebr_2551 Trebr_2551 Trebr_2551 3012150 3013235 - hypothetical protein COGs: COG4677 Pectin methylesterase~KEGG: cja:CJA_0041 pectin methylesterase%2C putative%2C pme8A~SPTR: Pectin methylesterase%2C putative%2C pme8A%3B~IMG reference gene:2504921477~PFAM: Pectinesterase gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2551 Trebr_2552 Trebr_2552 Trebr_2552 3013367 3014260 + hypothetical protein KEGG: sua:Saut_1390 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921478~PFAM: GIY-YIG catalytic domain gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2552 Trebr_2553 Trebr_2553 Trebr_2553 3014289 3014795 + hypothetical protein KEGG: cpy:Cphy_0999 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921479 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2553 Trebr_2554 Trebr_2554 Trebr_2554 3014951 3015679 + outer membrane protein KEGG: outer membrane protein~SPTR: Outer membrane protein%3B~IMG reference gene:2504921480~PFAM: Surface lipoprotein of Spirochaetales order gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2554 Trebr_2555 Trebr_2555 Trebr_2555 3015804 3017150 - Pectate lyase/Amb allergen COGs: COG3866 Pectate lyase~InterPro IPR002022~KEGG: cco:CCC13826_0280 AAA ATPase family protein~PFAM: Pectate lyase/Amb allergen~SMART: Pectate lyase/Amb allergen~SPTR: Pectate lyase%3B~IMG reference gene:2504921481~PFAM: Pectate lyase gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2555 Trebr_2556 Trebr_2556 Trebr_2556 3017369 3019888 - Pectinesterase InterPro IPR000070~KEGG: cja:CJA_0041 pectin methylesterase%2C putative%2C pme8A~PFAM: Pectinesterase%2C catalytic~SPTR: Pectin methylesterase%2C putative%2C pme8A%3B~IMG reference gene:2504921482~PFAM: Pectinesterase gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2556 Trebr_2557 Trebr_2557 Trebr_2557 3019985 3020539 - hypothetical protein KEGG: eel:EUBELI_01249 polysaccharide lyase family 1 modular protein with two candidate pectate lyase domains~SPTR: Polysaccharide Lyase Family 1 modular protein with two candidate pectate lyase domains%3B~IMG reference gene:2504921483 gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2557 Trebr_2558 Trebr_2558 Trebr_2558 3020591 3021085 - hypothetical protein IMG reference gene:2504921484 gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2558 Trebr_2559 Trebr_2559 Trebr_2559 3021387 3022322 - cation diffusion facilitator family transporter COGs: COG3965 Co/Zn/Cd cation transporter~InterPro IPR002524~KEGG: cyt:cce_2685 putative cation efflux protein~PFAM: Cation efflux protein~SPTR: Cation diffusion facilitator family transporter%3B~TIGRFAM: Cation efflux protein~IMG reference gene:2504921485~PFAM: Cation efflux family~TIGRFAM: cation diffusion facilitator family transporter gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2559 Trebr_2560 Trebr_2560 Trebr_2560 3022445 3024166 - phenylalanyl-tRNA synthetase%2C beta subunit COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit~InterPro IPR005147:IPR004531~KEGG: tde:TDE1927 phenylalanyl-tRNA synthetase subunit beta~PFAM: tRNA synthetase%2C B5~PRIAM: Phenylalanine--tRNA ligase~SPTR: Phenylalanyl-tRNA synthetase beta chain%3B~TIGRFAM: Phenylalanyl-tRNA synthetase%2C class IIc%2C beta subunit%2C archae/euk cytosolic~IMG reference gene:2504921486~PFAM: tRNA synthetase B5 domain~TIGRFAM: phenylalanyl-tRNA synthetase%2C beta subunit gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2560 Trebr_2561 Trebr_2561 Trebr_2561 3024418 3024558 - hypothetical protein IMG reference gene:2504921487 gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2561 Trebr_2562 Trebr_2562 Trebr_2562 3024713 3025381 - hypothetical protein IMG reference gene:2504921488 gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2562 Trebr_2563 Trebr_2563 Trebr_2563 3025612 3026253 - hypothetical protein KEGG: ter:Tery_2223 hypothetical protein~SPTR: Leucine-rich repeat%2C typical subtype%3B~IMG reference gene:2504921489 gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2563 Trebr_2564 Trebr_2564 Trebr_2564 3026274 3026459 - hypothetical protein IMG reference gene:2504921490 gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2564 Trebr_2565 Trebr_2565 Trebr_2565 3026980 3027240 + hypothetical protein KEGG: cdf:CD1724 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921491 gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2565 Trebr_2566 Trebr_2566 Trebr_2566 3027264 3027899 + Protein of unknown function DUF2174 COGs: COG4832 conserved hypothetical protein~InterPro IPR019233~KEGG: lin:lin2189 hypothetical protein~PFAM: Protein of unknown function DUF2174%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921492~PFAM: Uncharacterized conserved protein (DUF2174) gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2566 Trebr_2567 Trebr_2567 Trebr_2567 3027929 3028561 + Protein of unknown function DUF2174 COGs: COG4832 conserved hypothetical protein~InterPro IPR019233~KEGG: fsu:Fisuc_0606 hypothetical protein~PFAM: Protein of unknown function DUF2174%2C N-terminal~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921493~PFAM: Uncharacterized conserved protein (DUF2174) gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2567 Trebr_2568 Trebr_2568 Trebr_2568 3028789 3031425 + hypothetical protein KEGG: tde:TDE1941 hypothetical protein~SPTR: FG-GAP repeat domain protein%3B~IMG reference gene:2504921494 gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2568 Trebr_2569 Trebr_2569 Trebr_2569 3031422 3032522 + hypothetical protein KEGG: tde:TDE1940 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921495 gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2569 Trebr_2570 Trebr_2570 Trebr_2570 3032772 3033491 + Phosphonate-transporting ATPase COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component~InterPro IPR003439:IPR003593~KEGG: sta:STHERM_c02090 ATP-binding/permease MacB~PFAM: ABC transporter-like~PRIAM: Phosphonate-transporting ATPase~SMART: ATPase%2C AAA+ type%2C core~SPTR: ABC transporter related protein%3B~IMG reference gene:2504921496~PFAM: ABC transporter gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2570 Trebr_2571 Trebr_2571 Trebr_2571 3033506 3034783 + protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: sta:STHERM_c02080 putative permease%2C involved in lipoprotein release~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Putative permease%2C involved in lipoprotein release%3B~IMG reference gene:2504921497~PFAM: Predicted permease gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2571 Trebr_2572 Trebr_2572 Trebr_2572 3034802 3036148 + protein of unknown function DUF214 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component~InterPro IPR003838~KEGG: sta:STHERM_c02070 putative permease involved in lipoprotein release~PFAM: Protein of unknown function DUF214%2C permase predicted~SPTR: Putative permease involved in lipoprotein release%3B~IMG reference gene:2504921498~PFAM: Predicted permease gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2572 Trebr_2573 Trebr_2573 Trebr_2573 3036183 3036923 + putative outer membrane protein involved in lipoprotein sorting KEGG: sta:STHERM_c02060 putative outer membrane protein involved in lipoprotein sorting~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921499 gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2573 Trebr_2574 Trebr_2574 Trebr_2574 3036917 3038143 + hypothetical protein KEGG: sta:STHERM_c02050 hypothetical protein~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921500 gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2574 Trebr_2575 Trebr_2575 Trebr_2575 3038557 3039054 + helix-turn-helix domain protein InterPro IPR001387~KEGG: apv:Apar_1239 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3~SPTR: DNA-binding helix-turn-helix protein%3B~IMG reference gene:2504921501~PFAM: Helix-turn-helix gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2575 Trebr_2576 Trebr_2576 Trebr_2576 3039241 3039537 + hypothetical protein IMG reference gene:2504921502 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2576 Trebr_2577 Trebr_2577 Trebr_2577 3039627 3040907 + major facilitator superfamily MFS_1 InterPro IPR011701~KEGG: dsy:DSY1410 hypothetical protein~PFAM: Major facilitator superfamily MFS-1~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921503~PFAM: Bacterial protein of unknown function (DUF894) gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2577 Trebr_2578 Trebr_2578 Trebr_2578 3040920 3041915 + transcriptional regulator%2C LacI family COGs: COG1609 Transcriptional regulators~InterPro IPR000843:IPR001761~KEGG: dtu:Dtur_0547 transcriptional regulator%2C LacI family~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921504~PFAM: Bacterial regulatory proteins%2C lacI family%3B family gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2578 Trebr_2579 Trebr_2579 Trebr_2579 3041934 3043886 - hypothetical protein KEGG: cth:Cthe_0009 YD repeat-containing protein~SPTR: YD repeat containing protein%3B~IMG reference gene:2504921505 gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2579 Trebr_2580 Trebr_2580 Trebr_2580 3043995 3044855 + metal dependent phosphohydrolase COGs: COG3294 conserved hypothetical protein~KEGG: ssm:Spirs_0575 metal dependent phosphohydrolase~SPTR: Metal dependent phosphohydrolase%3B~IMG reference gene:2504921506 gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2580 Trebr_2581 Trebr_2581 Trebr_2581 3044864 3045682 + protein of unknown function DUF208 COGs: COG1636 conserved hypothetical protein~InterPro IPR003828~KEGG: hypothetical protein~PFAM: Protein of unknown function DUF208~SPTR: Putative uncharacterized protein%3B~IMG reference gene:2504921507~PFAM: Uncharacterized BCR%2C COG1636 gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2581 Trebr_2582 Trebr_2582 Trebr_2582 3045788 3046660 - ABC-type transporter%2C integral membrane subunit COGs: COG0395 ABC-type sugar transport system permease component~InterPro IPR000515~KEGG: csh:Closa_3982 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Sugar permease%3B~IMG reference gene:2504921508~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2582 Trebr_2583 Trebr_2583 Trebr_2583 3046677 3047588 - ABC-type transporter%2C integral membrane subunit COGs: COG1175 ABC-type sugar transport systems permease components~InterPro IPR000515~KEGG: csh:Closa_3983 binding-protein-dependent transport systems inner membrane component~PFAM: Binding-protein-dependent transport systems inner membrane component~SPTR: Putative ABC-type sugar transport system%2C permease component%3B~IMG reference gene:2504921509~PFAM: Binding-protein-dependent transport system inner membrane component gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2583 Trebr_2584 Trebr_2584 Trebr_2584 3047657 3048961 - extracellular solute-binding protein family 1 COGs: COG1653 ABC-type sugar transport system periplasmic component~InterPro IPR006059~KEGG: csh:Closa_3984 extracellular solute-binding protein family 1~PFAM: Bacterial extracellular solute-binding%2C family 1~SPTR: Putative sugar-binding periplasmic protein%3B~IMG reference gene:2504921510~PFAM: Bacterial extracellular solute-binding protein gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2584 Trebr_2585 Trebr_2585 Trebr_2585 3049050 3050402 + amino-acid N-acetyltransferase COGs: COG0548 Acetylglutamate kinase~InterPro IPR001048:IPR000182:IPR010167~KEGG: sta:STHERM_c17320 putative amino acid acetyltransferase~PFAM: GCN5-related N-acetyltransferase%3B Aspartate/glutamate/uridylate kinase~SPTR: Putative amino acid acetyltransferase%3B~TIGRFAM: Amino-acid N-acetyltransferase (ArgA)~IMG reference gene:2504921511~PFAM: Acetyltransferase (GNAT) family%3B Amino acid kinase family~TIGRFAM: amino-acid N-acetyltransferase gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2585 Trebr_2586 Trebr_2586 Trebr_2586 3051066 3053519 - DNA gyrase%2C A subunit COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit~InterPro IPR002205:IPR006691:IPR005743~KEGG: tde:TDE0295 DNA gyrase%2C A subunit~PFAM: DNA topoisomerase%2C type IIA%2C subunit A or C-terminal%3B DNA gyrase/topoisomerase IV%2C subunit A%2C C-terminal beta-pinwheel~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase%2C type IIA%2C subunit A or C-terminal~SPTR: DNA gyrase%2C A subunit%3B~TIGRFAM: DNA gyrase%2C subunit A~IMG reference gene:2504921512~PFAM: DNA gyrase/topoisomerase IV%2C subunit A%3B DNA gyrase C-terminal domain%2C beta-propeller~TIGRFAM: DNA gyrase%2C A subunit gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2586 Trebr_2587 Trebr_2587 Trebr_2587 3053601 3055517 - DNA gyrase%2C B subunit COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit~InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 001241:IPR011557~KEGG: tde:TDE0002 DNA gyrase%2C B subunit~PFAM: DNA topoisomerase%2C type IIA%2C subunit B%2C region 2%3B ATP-binding region%2C ATPase-like%3B Toprim domain%3B DNA topoisomerase%2C type IIA%2C subunit B%2C C-terminal~PRIAM: DNA topoisomerase (ATP-hydrolyzing)~SMART: DNA topoisomerase%2C type IIA%2C subunit B or N-terminal%3B ATP-binding region%2C ATPase-like~SPTR: DNA gyrase subunit B%3B~TIGRFAM: DNA gyrase%2C subunit B~IMG reference gene:2504921513~PFAM: Toprim domain%3B Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%3B DNA gyrase B%3B DNA gyrase B subunit%2C carboxyl terminus~TIGRFAM: DNA gyrase%2C B subunit gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_2587 Trebr_R0001 Trebr_R0001 Trebr_R0001 427904 429433 + 16S ribosomal RNA IMG reference gene:2504919233 rRNA gene367 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0001 Trebr_R0002 Trebr_R0002 Trebr_R0002 429546 429619 + tRNA-Ile IMG reference gene:2504919234 tRNA gene368 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0002 Trebr_R0003 Trebr_R0003 Trebr_R0003 429832 432806 + 23S ribosomal RNA IMG reference gene:2504919235 rRNA gene369 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0003 Trebr_R0004 Trebr_R0004 Trebr_R0004 432906 433014 + 5S ribosomal RNA IMG reference gene:2504919236 rRNA gene370 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0004 Trebr_R0005 Trebr_R0005 Trebr_R0005 466228 466300 + tRNA-Ala IMG reference gene:2504919254 tRNA gene388 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0005 Trebr_R0006 Trebr_R0006 Trebr_R0006 555479 555561 + tRNA-Leu IMG reference gene:2504919321 tRNA gene455 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0006 Trebr_R0007 Trebr_R0007 Trebr_R0007 560647 560719 + tRNA-Thr IMG reference gene:2504919326 tRNA gene460 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0007 Trebr_R0008 Trebr_R0008 Trebr_R0008 604313 604397 + tRNA-Ser IMG reference gene:2504919360 tRNA gene494 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0008 Trebr_R0009 Trebr_R0009 Trebr_R0009 604467 604551 + tRNA-Ser IMG reference gene:2504919361 tRNA gene495 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0009 Trebr_R0010 Trebr_R0010 Trebr_R0010 604560 604633 + tRNA-Arg IMG reference gene:2504919362 tRNA gene496 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0010 Trebr_R0011 Trebr_R0011 Trebr_R0011 604665 604749 + tRNA-Ser IMG reference gene:2504919363 tRNA gene497 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0011 Trebr_R0012 Trebr_R0012 Trebr_R0012 604861 604945 + tRNA-Ser IMG reference gene:2504919364 tRNA gene498 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0012 Trebr_R0013 Trebr_R0013 Trebr_R0013 605207 605310 + RNA component of signal recognition particle IMG reference gene:2504919365 gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0013 Trebr_R0014 Trebr_R0014 Trebr_R0014 944592 944665 + tRNA-Val IMG reference gene:2504919645 tRNA gene779 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0014 Trebr_R0015 Trebr_R0015 Trebr_R0015 952331 952403 - tRNA-Asn IMG reference gene:2504919655 tRNA gene789 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0015 Trebr_R0016 Trebr_R0016 Trebr_R0016 1023006 1023079 + tRNA-Pro IMG reference gene:2504919718 tRNA gene852 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0016 Trebr_R0017 Trebr_R0017 Trebr_R0017 1109654 1109740 - tRNA-Leu IMG reference gene:2504919794 tRNA gene928 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0017 Trebr_R0018 Trebr_R0018 Trebr_R0018 1130399 1131928 + 16S ribosomal RNA IMG reference gene:2504919816 rRNA gene950 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0018 Trebr_R0019 Trebr_R0019 Trebr_R0019 1132086 1132159 + tRNA-Ala IMG reference gene:2504919817 tRNA gene951 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0019 Trebr_R0020 Trebr_R0020 Trebr_R0020 1132451 1135425 + 23S ribosomal RNA IMG reference gene:2504919818 rRNA gene952 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0020 Trebr_R0021 Trebr_R0021 Trebr_R0021 1135525 1135633 + 5S ribosomal RNA IMG reference gene:2504919819 rRNA gene953 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0021 Trebr_R0022 Trebr_R0022 Trebr_R0022 1209909 1210448 + Rubrerythrin COGs: COG1592 Rubrerythrin~InterPro IPR003251~KEGG: cpy:Cphy_0524 rubrerythrin~PFAM: Rubrerythrin~SPTR: Putative uncharacterized protein%3B~tmRNA as predicted by Rfam (RF00023)%2C score 121.50~IMG reference gene:2504919891~PFAM: Rubrerythrin gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0022 Trebr_R0023 Trebr_R0023 Trebr_R0023 1315632 1315705 + tRNA-Arg IMG reference gene:2504919993 tRNA gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0023 Trebr_R0024 Trebr_R0024 Trebr_R0024 1368936 1369008 + tRNA-Phe IMG reference gene:2504920037 tRNA gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0024 Trebr_R0025 Trebr_R0025 Trebr_R0025 1376711 1376783 - tRNA-Val IMG reference gene:2504920046 tRNA gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0025 Trebr_R0026 Trebr_R0026 Trebr_R0026 1444073 1444145 + tRNA-Lys IMG reference gene:2504920103 tRNA gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0026 Trebr_R0027 Trebr_R0027 Trebr_R0027 1504365 1504436 - tRNA-Glu IMG reference gene:2504920159 tRNA gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0027 Trebr_R0028 Trebr_R0028 Trebr_R0028 1504548 1504621 - tRNA-Gln IMG reference gene:2504920160 tRNA gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0028 Trebr_R0029 Trebr_R0029 Trebr_R0029 1589906 1589977 - tRNA-Gly IMG reference gene:2504920235 tRNA gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0029 Trebr_R0030 Trebr_R0030 Trebr_R0030 1597117 1597200 + tRNA-Leu IMG reference gene:2504920242 tRNA gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0030 Trebr_R0031 Trebr_R0031 Trebr_R0031 1611074 1611487 - RNA component of RNaseP Bacterial RNase P class A as predicted by Rfam (RF00010)%2C score 251.88~IMG reference gene:2504920255 gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0031 Trebr_R0032 Trebr_R0032 Trebr_R0032 1618769 1618850 - tRNA-Tyr IMG reference gene:2504920263 tRNA gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0032 Trebr_R0033 Trebr_R0033 Trebr_R0033 1618869 1618942 - tRNA-Thr IMG reference gene:2504920264 tRNA gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0033 Trebr_R0034 Trebr_R0034 Trebr_R0034 1674878 1674951 - tRNA-Arg IMG reference gene:2504920316 tRNA gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0034 Trebr_R0035 Trebr_R0035 Trebr_R0035 1708012 1708093 + tRNA-Leu IMG reference gene:2504920347 tRNA gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0035 Trebr_R0036 Trebr_R0036 Trebr_R0036 1742002 1742074 - tRNA-Lys IMG reference gene:2504920376 tRNA gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0036 Trebr_R0037 Trebr_R0037 Trebr_R0037 1742094 1742167 - tRNA-Arg IMG reference gene:2504920377 tRNA gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0037 Trebr_R0038 Trebr_R0038 Trebr_R0038 1742191 1742265 - tRNA-His IMG reference gene:2504920378 tRNA gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0038 Trebr_R0039 Trebr_R0039 Trebr_R0039 1753048 1753120 - tRNA-Pro IMG reference gene:2504920390 tRNA gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0039 Trebr_R0040 Trebr_R0040 Trebr_R0040 1753165 1753241 - tRNA-Asp IMG reference gene:2504920391 tRNA gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0040 Trebr_R0041 Trebr_R0041 Trebr_R0041 1816398 1816470 + tRNA-Met IMG reference gene:2504920441 tRNA gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0041 Trebr_R0042 Trebr_R0042 Trebr_R0042 1863303 1863383 + tRNA-Leu IMG reference gene:2504920481 tRNA gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0042 Trebr_R0043 Trebr_R0043 Trebr_R0043 1863439 1863513 + tRNA-Gly IMG reference gene:2504920482 tRNA gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0043 Trebr_R0044 Trebr_R0044 Trebr_R0044 2043053 2043161 - 5S ribosomal RNA IMG reference gene:2504920643 rRNA gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0044 Trebr_R0045 Trebr_R0045 Trebr_R0045 2043261 2046235 - 23S ribosomal RNA IMG reference gene:2504920644 rRNA gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0045 Trebr_R0046 Trebr_R0046 Trebr_R0046 2046527 2046600 - tRNA-Ala IMG reference gene:2504920645 tRNA gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0046 Trebr_R0047 Trebr_R0047 Trebr_R0047 2046758 2048288 - 16S ribosomal RNA IMG reference gene:2504920646 rRNA gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0047 Trebr_R0048 Trebr_R0048 Trebr_R0048 2093750 2093822 - tRNA-Gln IMG reference gene:2504920682 tRNA gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0048 Trebr_R0049 Trebr_R0049 Trebr_R0049 2105151 2105223 - tRNA-Pro IMG reference gene:2504920700 tRNA gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0049 Trebr_R0050 Trebr_R0050 Trebr_R0050 2105231 2105304 - tRNA-Arg IMG reference gene:2504920701 tRNA gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0050 Trebr_R0051 Trebr_R0051 Trebr_R0051 2159516 2159590 - tRNA-Glu IMG reference gene:2504920747 tRNA gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0051 Trebr_R0052 Trebr_R0052 Trebr_R0052 2286914 2286986 - tRNA-Val IMG reference gene:2504920858 tRNA gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0052 Trebr_R0053 Trebr_R0053 Trebr_R0053 2443196 2443272 - tRNA-Met IMG reference gene:2504920985 tRNA gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0053 Trebr_R0054 Trebr_R0054 Trebr_R0054 2502727 2502835 - 5S ribosomal RNA IMG reference gene:2504921036 rRNA gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0054 Trebr_R0055 Trebr_R0055 Trebr_R0055 2502935 2505909 - 23S ribosomal RNA IMG reference gene:2504921037 rRNA gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0055 Trebr_R0056 Trebr_R0056 Trebr_R0056 2506122 2506195 - tRNA-Ile IMG reference gene:2504921038 tRNA gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0056 Trebr_R0057 Trebr_R0057 Trebr_R0057 2506308 2507838 - 16S ribosomal RNA IMG reference gene:2504921039 rRNA gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0057 Trebr_R0058 Trebr_R0058 Trebr_R0058 2714825 2714897 - tRNA-Trp IMG reference gene:2504921230 tRNA gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0058 Trebr_R0059 Trebr_R0059 Trebr_R0059 2715158 2715230 - tRNA-Thr IMG reference gene:2504921232 tRNA gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0059 Trebr_R0060 Trebr_R0060 Trebr_R0060 2894725 2894797 - tRNA-Met IMG reference gene:2504921379 tRNA gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0060 Trebr_R0061 Trebr_R0061 Trebr_R0061 2894988 2895061 + tRNA-Ala IMG reference gene:2504921380 tRNA gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0061 Trebr_R0062 Trebr_R0062 Trebr_R0062 2622472 2622543 + tRNA-Cys IMG reference gene:2504921128 tRNA gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=Trebr_R0062