Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 SUPERFAMILY SSF52440 1 109 7.63E-26 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 109 4.2E-29 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 SMART SM01210 345 442 2.4E-31 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 439 1.3E-136 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 Gene3D G3DSA:3.30.470.20 199 344 1.0E-44 T 13-10-2018 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 347 438 1.0E-24 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 305 312 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 SUPERFAMILY SSF51246 345 439 7.85E-23 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 Gene3D G3DSA:3.90.600.10 346 446 1.2E-27 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 Gene3D G3DSA:3.30.1490.20 130 197 3.1E-26 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 SUPERFAMILY SSF56059 111 339 1.31E-53 T 13-10-2018 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 110 311 1.4E-64 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 Gene3D G3DSA:3.40.50.20 1 102 5.6E-31 T 13-10-2018 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 SMART SM01209 110 311 3.0E-98 T 13-10-2018 Trebr_0401 7b51fea7946ba73e465cf10dba086179 448 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 442 35.731 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_2383 cf9af0dcb3f38dfac645b7690cbaf552 702 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 444 625 1.9E-26 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_2383 cf9af0dcb3f38dfac645b7690cbaf552 702 SUPERFAMILY SSF55073 439 628 8.63E-53 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_2383 cf9af0dcb3f38dfac645b7690cbaf552 702 SMART SM01080 34 342 3.6E-51 T 13-10-2018 IPR007890 CHASE2 Trebr_2383 cf9af0dcb3f38dfac645b7690cbaf552 702 Gene3D G3DSA:3.30.70.1230 434 637 3.8E-62 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_2383 cf9af0dcb3f38dfac645b7690cbaf552 702 SMART SM00044 407 610 6.3E-10 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_2383 cf9af0dcb3f38dfac645b7690cbaf552 702 Pfam PF05226 CHASE2 domain 26 337 2.0E-46 T 13-10-2018 IPR007890 CHASE2 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 SUPERFAMILY SSF53822 59 321 1.01E-56 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 Gene3D G3DSA:3.40.50.2300 62 307 2.3E-63 T 13-10-2018 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 Pfam PF13377 Periplasmic binding protein-like domain 169 325 2.4E-19 T 13-10-2018 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.6E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.6E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 SMART SM00354 1 71 7.8E-25 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 Gene3D G3DSA:1.10.260.40 2 59 1.3E-20 T 13-10-2018 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 Gene3D G3DSA:3.40.50.2300 160 289 2.3E-63 T 13-10-2018 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 46 2.4E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0134 bef85cfec7f7d57d68e5e53a63fe14ef 327 SUPERFAMILY SSF47413 2 59 1.59E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1626 3d756cb423f571d3589f18b6afe9a2fb 273 Gene3D G3DSA:3.20.20.70 5 261 1.7E-69 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1626 3d756cb423f571d3589f18b6afe9a2fb 273 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 12 266 26.475 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_1626 3d756cb423f571d3589f18b6afe9a2fb 273 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 16 240 3.1E-53 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_1626 3d756cb423f571d3589f18b6afe9a2fb 273 SUPERFAMILY SSF51366 14 241 9.42E-58 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Trebr_1626 3d756cb423f571d3589f18b6afe9a2fb 273 Pfam PF00290 Tryptophan synthase alpha chain 16 244 6.9E-56 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 SUPERFAMILY SSF46785 1 83 8.18E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 Gene3D G3DSA:3.40.190.10 90 286 2.1E-28 T 13-10-2018 Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 SUPERFAMILY SSF53850 88 292 1.71E-24 T 13-10-2018 Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.0E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 Gene3D G3DSA:3.40.190.10 160 264 2.1E-28 T 13-10-2018 Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 Gene3D G3DSA:1.10.10.10 1 81 6.2E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0197 fc70a31e1331fe9b9a2f891dad0bd21f 294 Pfam PF03466 LysR substrate binding domain 87 291 1.1E-25 T 13-10-2018 IPR005119 LysR, substrate-binding Trebr_1480 ab3324f392297340a377c7c4af553371 339 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 5.3E-138 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Trebr_1480 ab3324f392297340a377c7c4af553371 339 SUPERFAMILY SSF52540 20 248 1.54E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1480 ab3324f392297340a377c7c4af553371 339 SUPERFAMILY SSF46785 256 328 5.8E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1480 ab3324f392297340a377c7c4af553371 339 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 339 145.87 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Trebr_1480 ab3324f392297340a377c7c4af553371 339 Gene3D G3DSA:1.10.8.60 182 256 9.7E-27 T 13-10-2018 Trebr_1480 ab3324f392297340a377c7c4af553371 339 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 253 326 5.5E-32 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Trebr_1480 ab3324f392297340a377c7c4af553371 339 Gene3D G3DSA:1.10.10.10 257 335 1.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1480 ab3324f392297340a377c7c4af553371 339 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 251 327 4.0E-30 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Trebr_1480 ab3324f392297340a377c7c4af553371 339 SMART SM00382 51 200 1.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1480 ab3324f392297340a377c7c4af553371 339 Gene3D G3DSA:3.40.50.300 20 181 1.2E-35 T 13-10-2018 Trebr_1480 ab3324f392297340a377c7c4af553371 339 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 10 235 2.9E-100 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Trebr_0872 adf9c5dafbb05f393a9b10578c0aa902 234 SUPERFAMILY SSF52540 6 229 5.17E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0872 adf9c5dafbb05f393a9b10578c0aa902 234 SMART SM00382 35 222 1.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0872 adf9c5dafbb05f393a9b10578c0aa902 234 Gene3D G3DSA:3.40.50.300 5 231 1.8E-66 T 13-10-2018 Trebr_0872 adf9c5dafbb05f393a9b10578c0aa902 234 Pfam PF00005 ABC transporter 26 174 3.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2279 1982071e0b5b336bd9738706c0f84a34 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 8 120 4.1E-37 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2279 1982071e0b5b336bd9738706c0f84a34 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 7 120 8.5E-41 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2279 1982071e0b5b336bd9738706c0f84a34 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 7 120 25.939 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2279 1982071e0b5b336bd9738706c0f84a34 120 Gene3D G3DSA:3.30.420.100 6 120 3.2E-38 T 13-10-2018 Trebr_2279 1982071e0b5b336bd9738706c0f84a34 120 SUPERFAMILY SSF53137 8 118 5.45E-43 T 13-10-2018 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 SUPERFAMILY SSF55874 428 583 3.93E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 SMART SM00388 361 428 2.0E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 Pfam PF00512 His Kinase A (phospho-acceptor) domain 362 427 4.8E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 Gene3D G3DSA:1.10.287.130 352 430 8.8E-14 T 13-10-2018 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 SMART SM00387 473 585 2.5E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 474 584 8.7E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 524 4.9E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 563 4.9E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 569 582 4.9E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 538 4.9E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 SUPERFAMILY SSF47384 348 426 9.61E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_0163 ea62148b663fbae9ec2413221930aac1 586 Gene3D G3DSA:3.30.565.10 433 586 7.9E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 PRINTS PR00981 Seryl-tRNA synthetase signature 314 327 6.8E-27 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 PRINTS PR00981 Seryl-tRNA synthetase signature 262 274 6.8E-27 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 PRINTS PR00981 Seryl-tRNA synthetase signature 331 347 6.8E-27 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 PRINTS PR00981 Seryl-tRNA synthetase signature 352 368 6.8E-27 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 PRINTS PR00981 Seryl-tRNA synthetase signature 274 287 6.8E-27 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 Gene3D G3DSA:3.30.930.10 104 425 4.1E-129 T 13-10-2018 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 SUPERFAMILY SSF55681 115 422 2.77E-85 T 13-10-2018 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 105 3.4E-19 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 416 7.8E-148 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 400 8.4E-30 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 PIRSF PIRSF001529 1 425 7.5E-145 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 37.436 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 Gene3D G3DSA:1.10.287.40 1 103 1.9E-19 T 13-10-2018 Trebr_1176 e976084d6b1e5024a40e39fb2dc174c4 425 SUPERFAMILY SSF46589 1 111 1.78E-21 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 122 6.1E-18 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 SMART SM00902 517 576 2.6E-25 T 13-10-2018 IPR003149 Iron hydrogenase, small subunit Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 1 74 2.2E-15 T 13-10-2018 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Gene3D G3DSA:4.10.260.20 518 580 7.6E-20 T 13-10-2018 IPR036991 Iron hydrogenase, small subunit superfamily Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 SUPERFAMILY SSF53920 189 573 1.7E-126 T 13-10-2018 IPR009016 Iron hydrogenase Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 SUPERFAMILY SSF54292 1 73 4.56E-18 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 TIGRFAM TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A 139 515 2.7E-154 T 13-10-2018 IPR013352 Iron hydrogenase, subset GO:0005506|GO:0008901|GO:0051536|GO:0055114 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 SMART SM00929 83 123 6.9E-17 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 189 200 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Gene3D G3DSA:3.30.70.20 141 204 2.1E-152 T 13-10-2018 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Gene3D G3DSA:3.40.950.10 271 506 2.1E-152 T 13-10-2018 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Pfam PF02256 Iron hydrogenase small subunit 520 575 1.0E-24 T 13-10-2018 IPR003149 Iron hydrogenase, small subunit Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Pfam PF13187 4Fe-4S dicluster domain 145 204 9.5E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 SUPERFAMILY SSF54862 76 207 1.67E-35 T 13-10-2018 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Gene3D G3DSA:3.10.20.740 1 123 1.0E-40 T 13-10-2018 Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 225 512 2.0E-91 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal Trebr_0334 33e24ec38a01af22dfc4bbd39cd420b8 580 Gene3D G3DSA:3.40.50.1780 205 515 2.1E-152 T 13-10-2018 Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 Pfam PF01476 LysM domain 214 256 8.1E-10 T 13-10-2018 IPR018392 LysM domain Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 Pfam PF01476 LysM domain 163 207 4.3E-11 T 13-10-2018 IPR018392 LysM domain Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 Gene3D G3DSA:2.70.70.10 258 400 1.3E-47 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 Gene3D G3DSA:3.10.350.10 158 211 4.7E-13 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 SUPERFAMILY SSF51261 214 399 2.72E-54 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 SUPERFAMILY SSF54106 161 207 1.06E-7 T 13-10-2018 Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 Gene3D G3DSA:3.10.350.10 212 257 1.5E-10 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 SMART SM00257 213 256 2.9E-10 T 13-10-2018 IPR018392 LysM domain Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 SMART SM00257 162 207 1.2E-9 T 13-10-2018 IPR018392 LysM domain Trebr_1938 5361943f3c114ad2eaccf0d2dfbbdd7e 400 Pfam PF01551 Peptidase family M23 300 395 1.8E-32 T 13-10-2018 IPR016047 Peptidase M23 Trebr_1666 67fe9e61040e40813b3b17acb0386321 291 Pfam PF01551 Peptidase family M23 58 156 6.2E-12 T 13-10-2018 IPR016047 Peptidase M23 Trebr_1666 67fe9e61040e40813b3b17acb0386321 291 Gene3D G3DSA:2.70.70.10 20 160 5.4E-13 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_1666 67fe9e61040e40813b3b17acb0386321 291 SUPERFAMILY SSF51261 26 158 6.8E-13 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_0006 e7ef3e98737a38908785618a710ab7f1 120 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 14 114 2.6E-16 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Trebr_0006 e7ef3e98737a38908785618a710ab7f1 120 SUPERFAMILY SSF54211 15 116 1.57E-20 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_0006 e7ef3e98737a38908785618a710ab7f1 120 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 11 118 13.192 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Trebr_0006 e7ef3e98737a38908785618a710ab7f1 120 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 93 3.0E-9 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Trebr_0006 e7ef3e98737a38908785618a710ab7f1 120 Gene3D G3DSA:3.30.230.10 7 115 1.1E-23 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_0006 e7ef3e98737a38908785618a710ab7f1 120 Pfam PF00825 Ribonuclease P 11 115 2.6E-20 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Trebr_0231 1e12b4f592685a2ec4f9c4e6af0680c1 204 Hamap MF_00109 Shikimate kinase [aroK]. 2 194 17.427 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Trebr_0231 1e12b4f592685a2ec4f9c4e6af0680c1 204 Gene3D G3DSA:3.40.50.300 1 199 2.7E-40 T 13-10-2018 Trebr_0231 1e12b4f592685a2ec4f9c4e6af0680c1 204 SUPERFAMILY SSF52540 1 176 7.98E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0231 1e12b4f592685a2ec4f9c4e6af0680c1 204 Pfam PF01202 Shikimate kinase 13 178 2.9E-21 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Trebr_0231 1e12b4f592685a2ec4f9c4e6af0680c1 204 PRINTS PR01100 Shikimate kinase family signature 5 20 8.0E-7 T 13-10-2018 Trebr_0231 1e12b4f592685a2ec4f9c4e6af0680c1 204 PRINTS PR01100 Shikimate kinase family signature 29 42 8.0E-7 T 13-10-2018 Trebr_0231 1e12b4f592685a2ec4f9c4e6af0680c1 204 PRINTS PR01100 Shikimate kinase family signature 107 124 8.0E-7 T 13-10-2018 Trebr_1344 0f3165eebddb133aa7fc69cd7a932ca6 166 SUPERFAMILY SSF53927 15 157 9.03E-36 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Trebr_1344 0f3165eebddb133aa7fc69cd7a932ca6 166 PIRSF PIRSF006019 5 165 2.3E-46 T 13-10-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Trebr_1344 0f3165eebddb133aa7fc69cd7a932ca6 166 Gene3D G3DSA:3.40.140.10 10 165 9.1E-46 T 13-10-2018 Trebr_1344 0f3165eebddb133aa7fc69cd7a932ca6 166 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 13 132 2.7E-29 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Trebr_1344 0f3165eebddb133aa7fc69cd7a932ca6 166 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 87 122 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Pfam PF14559 Tetratricopeptide repeat 500 561 1.6E-5 T 13-10-2018 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Pfam PF14559 Tetratricopeptide repeat 638 704 2.9E-6 T 13-10-2018 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 235 268 9.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 455 488 6.6E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 421 454 2.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 557 590 0.16 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 353 386 0.16 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 523 556 2.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 489 522 180.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 319 352 17.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 659 692 61.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 625 658 40.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 387 420 8.6E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00028 591 624 9.7E-8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Pfam PF07719 Tetratricopeptide repeat 457 488 3.0E-5 T 13-10-2018 IPR013105 Tetratricopeptide repeat 2 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00671 387 418 110.0 T 13-10-2018 IPR006597 Sel1-like repeat Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00671 591 622 44.0 T 13-10-2018 IPR006597 Sel1-like repeat Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00671 557 588 36.0 T 13-10-2018 IPR006597 Sel1-like repeat Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SMART SM00671 455 486 79.0 T 13-10-2018 IPR006597 Sel1-like repeat Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SUPERFAMILY SSF48452 90 267 7.6E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Pfam PF13181 Tetratricopeptide repeat 422 454 0.021 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SUPERFAMILY SSF48452 418 690 8.09E-44 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Gene3D G3DSA:1.25.40.10 589 705 8.1E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Gene3D G3DSA:1.25.40.10 349 421 6.5E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Pfam PF13432 Tetratricopeptide repeat 357 418 3.0E-10 T 13-10-2018 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Pfam PF13432 Tetratricopeptide repeat 562 623 2.0E-9 T 13-10-2018 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 SUPERFAMILY SSF48452 296 454 4.17E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Gene3D G3DSA:1.25.40.10 422 588 1.9E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1845 adc48d6eaa7ac3ce5f2bfb3c2d84842a 705 Gene3D G3DSA:1.25.40.10 218 348 7.7E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1512 762525005dcea6532e4b314dcec4977a 410 Pfam PF00155 Aminotransferase class I and II 37 396 1.3E-53 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_1512 762525005dcea6532e4b314dcec4977a 410 SUPERFAMILY SSF53383 8 407 1.34E-81 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1512 762525005dcea6532e4b314dcec4977a 410 Gene3D G3DSA:3.40.640.10 71 301 5.3E-124 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1512 762525005dcea6532e4b314dcec4977a 410 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Trebr_1512 762525005dcea6532e4b314dcec4977a 410 Gene3D G3DSA:3.90.1150.10 18 391 5.3E-124 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0092 aca0cc5391897f57d3d1d478435978af 359 Gene3D G3DSA:3.20.20.150 1 358 3.5E-138 T 13-10-2018 Trebr_0092 aca0cc5391897f57d3d1d478435978af 359 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 359 152.756 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Trebr_0092 aca0cc5391897f57d3d1d478435978af 359 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 353 4.9E-138 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Trebr_0092 aca0cc5391897f57d3d1d478435978af 359 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 155 355 3.8E-66 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Trebr_0092 aca0cc5391897f57d3d1d478435978af 359 PIRSF PIRSF016049 1 358 3.4E-117 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Trebr_0092 aca0cc5391897f57d3d1d478435978af 359 SUPERFAMILY SSF51658 1 351 5.53E-79 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily Trebr_0833 e7e8ebe44e0308c3b14d0df805271422 163 Pfam PF04073 Aminoacyl-tRNA editing domain 27 139 2.0E-24 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Trebr_0833 e7e8ebe44e0308c3b14d0df805271422 163 Gene3D G3DSA:3.90.960.10 1 160 4.8E-40 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Trebr_0833 e7e8ebe44e0308c3b14d0df805271422 163 SUPERFAMILY SSF55826 5 145 7.59E-34 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Trebr_0897 f413807b881ceef58bc71416fe74a365 378 SUPERFAMILY SSF48208 20 376 8.69E-63 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_0897 f413807b881ceef58bc71416fe74a365 378 Gene3D G3DSA:1.50.10.10 18 376 4.9E-119 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_0897 f413807b881ceef58bc71416fe74a365 378 Pfam PF07470 Glycosyl Hydrolase Family 88 31 376 1.9E-77 T 13-10-2018 IPR010905 Glycosyl hydrolase, family 88 Trebr_1621 a15b6fea7eef51902bb44442b34009e3 280 Pfam PF04962 KduI/IolB family 75 269 4.4E-32 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Trebr_1621 a15b6fea7eef51902bb44442b34009e3 280 SUPERFAMILY SSF51182 1 264 5.34E-102 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily Trebr_1621 a15b6fea7eef51902bb44442b34009e3 280 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 280 52.297 T 13-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Trebr_1621 a15b6fea7eef51902bb44442b34009e3 280 Gene3D G3DSA:2.60.120.10 10 265 6.6E-114 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_1621 a15b6fea7eef51902bb44442b34009e3 280 Gene3D G3DSA:2.60.120.520 30 146 6.6E-114 T 13-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Trebr_1621 a15b6fea7eef51902bb44442b34009e3 280 PIRSF PIRSF006625 1 280 5.6E-125 T 13-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Trebr_2095 b66877330e946760dc7b2e41c4042da3 333 Gene3D G3DSA:3.40.50.410 91 289 4.3E-43 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_2095 b66877330e946760dc7b2e41c4042da3 333 Pfam PF00092 von Willebrand factor type A domain 93 282 9.0E-20 T 13-10-2018 IPR002035 von Willebrand factor, type A Trebr_2095 b66877330e946760dc7b2e41c4042da3 333 SMART SM00327 90 265 4.1E-16 T 13-10-2018 IPR002035 von Willebrand factor, type A Trebr_2095 b66877330e946760dc7b2e41c4042da3 333 SUPERFAMILY SSF53300 89 287 5.04E-29 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_0005 b4c501b561d4844f0416ee0f39fb400f 51 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.646 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0005 b4c501b561d4844f0416ee0f39fb400f 51 Pfam PF00468 Ribosomal protein L34 1 44 4.1E-23 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0005 b4c501b561d4844f0416ee0f39fb400f 51 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 3.0E-12 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0005 b4c501b561d4844f0416ee0f39fb400f 51 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_0005 b4c501b561d4844f0416ee0f39fb400f 51 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 2.0E-26 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0003 32e7adadc18c56fcde53869c2676087b 362 SUPERFAMILY SSF52540 4 331 1.13E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0003 32e7adadc18c56fcde53869c2676087b 362 Pfam PF02463 RecF/RecN/SMC N terminal domain 6 336 6.6E-15 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Trebr_0003 32e7adadc18c56fcde53869c2676087b 362 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 5 337 4.8E-70 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Trebr_0003 32e7adadc18c56fcde53869c2676087b 362 Gene3D G3DSA:1.20.1050.90 120 303 8.3E-81 T 13-10-2018 Trebr_0003 32e7adadc18c56fcde53869c2676087b 362 ProSitePatterns PS00618 RecF protein signature 2. 304 322 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 Trebr_0003 32e7adadc18c56fcde53869c2676087b 362 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 362 62.021 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Trebr_0003 32e7adadc18c56fcde53869c2676087b 362 Gene3D G3DSA:3.40.50.300 6 335 8.3E-81 T 13-10-2018 Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 1 470 60.15 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 Pfam PF04055 Radical SAM superfamily 168 354 8.9E-30 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 2 467 1.0E-131 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 Pfam PF00919 Uncharacterized protein family UPF0004 3 123 2.7E-24 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 92 467 5.6E-124 T 13-10-2018 Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 Gene3D G3DSA:3.40.50.12160 1 154 1.8E-24 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 SUPERFAMILY SSF102114 159 405 1.7E-57 T 13-10-2018 Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 Gene3D G3DSA:3.80.30.20 163 411 5.3E-84 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 Pfam PF01938 TRAM domain 410 469 1.0E-5 T 13-10-2018 IPR002792 TRAM domain Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 SMART SM00729 164 397 1.0E-58 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_0629 b26d76bcdf47bea7fe1018e0f158a1b0 470 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 168 188 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Trebr_0621 a0321623bb3bf9e15c4b47ad3aaa0237 333 Gene3D G3DSA:2.60.40.10 19 114 1.1E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0621 a0321623bb3bf9e15c4b47ad3aaa0237 333 Pfam PF00990 Diguanylate cyclase, GGDEF domain 164 321 5.6E-40 T 13-10-2018 IPR000160 GGDEF domain Trebr_0621 a0321623bb3bf9e15c4b47ad3aaa0237 333 SMART SM00267 151 326 1.9E-47 T 13-10-2018 IPR000160 GGDEF domain Trebr_0621 a0321623bb3bf9e15c4b47ad3aaa0237 333 Pfam PF07495 Y_Y_Y domain 46 103 1.2E-12 T 13-10-2018 IPR011123 Two component regulator three Y Trebr_0621 a0321623bb3bf9e15c4b47ad3aaa0237 333 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 158 325 1.8E-44 T 13-10-2018 IPR000160 GGDEF domain Trebr_0621 a0321623bb3bf9e15c4b47ad3aaa0237 333 SUPERFAMILY SSF55073 167 328 1.14E-41 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0621 a0321623bb3bf9e15c4b47ad3aaa0237 333 Gene3D G3DSA:3.30.70.270 148 328 2.3E-47 T 13-10-2018 Trebr_2259 7aa792b515dd9aeead4d6aa6f609b31d 158 SUPERFAMILY SSF55804 8 152 1.18E-19 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_2259 7aa792b515dd9aeead4d6aa6f609b31d 158 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 46 151 1.0E-17 T 13-10-2018 IPR002178 PTS EIIA type-2 domain Trebr_2259 7aa792b515dd9aeead4d6aa6f609b31d 158 Gene3D G3DSA:3.40.930.10 2 155 1.3E-23 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_0506 ce2d1d54cd89a235bb0c6603a1d3dbe0 241 SUPERFAMILY SSF48371 16 223 2.3E-29 T 13-10-2018 IPR016024 Armadillo-type fold Trebr_0506 ce2d1d54cd89a235bb0c6603a1d3dbe0 241 Gene3D G3DSA:1.25.10.90 10 233 1.0E-11 T 13-10-2018 Trebr_0506 ce2d1d54cd89a235bb0c6603a1d3dbe0 241 Pfam PF08713 DNA alkylation repair enzyme 24 164 1.5E-13 T 13-10-2018 IPR014825 DNA alkylation repair enzyme Trebr_0483 a509d478a55ce09aeb9da180cc39252e 278 SUPERFAMILY SSF69796 15 239 3.66E-69 T 13-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 Trebr_0483 a509d478a55ce09aeb9da180cc39252e 278 Gene3D G3DSA:3.30.1360.170 7 244 3.8E-75 T 13-10-2018 Trebr_0483 a509d478a55ce09aeb9da180cc39252e 278 Hamap MF_01408 Flavin-dependent thymidylate synthase [thyX]. 20 239 30.158 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 Trebr_0483 a509d478a55ce09aeb9da180cc39252e 278 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 24 231 6.7E-65 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 Trebr_0483 a509d478a55ce09aeb9da180cc39252e 278 Pfam PF02511 Thymidylate synthase complementing protein 26 225 3.0E-56 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 Trebr_2305 25632788481ef315af97304290df4bf5 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 73 141 2.2E-23 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Trebr_2305 25632788481ef315af97304290df4bf5 143 Gene3D G3DSA:1.10.10.250 74 142 7.2E-27 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Trebr_2305 25632788481ef315af97304290df4bf5 143 SMART SM00649 10 142 1.7E-80 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Trebr_2305 25632788481ef315af97304290df4bf5 143 ProSitePatterns PS00359 Ribosomal protein L11 signature. 128 142 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2305 25632788481ef315af97304290df4bf5 143 SUPERFAMILY SSF54747 4 74 4.19E-28 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Trebr_2305 25632788481ef315af97304290df4bf5 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 6 143 30.688 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Trebr_2305 25632788481ef315af97304290df4bf5 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 39 75 8.0E-13 T 13-10-2018 Trebr_2305 25632788481ef315af97304290df4bf5 143 Gene3D G3DSA:3.30.1550.10 3 73 9.6E-31 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Trebr_2305 25632788481ef315af97304290df4bf5 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 68 5.9E-28 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal Trebr_2305 25632788481ef315af97304290df4bf5 143 SUPERFAMILY SSF46906 69 142 2.88E-25 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Trebr_2305 25632788481ef315af97304290df4bf5 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 4 142 1.5E-61 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 Pfam PF13432 Tetratricopeptide repeat 258 320 3.9E-4 T 13-10-2018 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 Pfam PF04471 Restriction endonuclease 396 461 1.1E-7 T 13-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 SUPERFAMILY SSF48452 121 282 2.71E-25 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 Pfam PF13429 Tetratricopeptide repeat 76 241 6.6E-8 T 13-10-2018 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 Gene3D G3DSA:1.25.40.10 248 344 1.9E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 SUPERFAMILY SSF48452 249 360 1.37E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 SMART SM00028 253 286 3.6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 SMART SM00028 291 324 15.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 SMART SM00028 151 184 0.0016 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 SMART SM00028 185 218 1.1E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 SMART SM00028 117 150 310.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 SMART SM00028 78 111 450.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2380 88a9ec2a2e9417fbecb1bdfb4cad1836 471 Gene3D G3DSA:1.25.40.10 38 247 7.4E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0131 08366383cb22c861778fa8247b425d12 359 SUPERFAMILY SSF53822 31 324 1.14E-45 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0131 08366383cb22c861778fa8247b425d12 359 Gene3D G3DSA:3.40.50.2300 34 317 2.7E-63 T 13-10-2018 Trebr_0131 08366383cb22c861778fa8247b425d12 359 Pfam PF13407 Periplasmic binding protein domain 41 316 1.2E-33 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_0131 08366383cb22c861778fa8247b425d12 359 Gene3D G3DSA:3.40.50.2300 138 298 2.7E-63 T 13-10-2018 Trebr_2454 8f38a50b87db399fb96d0b5190f194ce 445 Gene3D G3DSA:1.10.150.130 106 222 1.7E-8 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal Trebr_2454 8f38a50b87db399fb96d0b5190f194ce 445 SUPERFAMILY SSF56349 138 407 8.83E-45 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Trebr_2454 8f38a50b87db399fb96d0b5190f194ce 445 Pfam PF00589 Phage integrase family 238 403 7.1E-22 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Trebr_2454 8f38a50b87db399fb96d0b5190f194ce 445 Gene3D G3DSA:1.10.443.10 223 416 8.2E-28 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Trebr_1419 f6a4f83f667f2ab3670f4ce1c66819ac 197 PIRSF PIRSF006305 1 196 1.1E-47 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 Trebr_1419 f6a4f83f667f2ab3670f4ce1c66819ac 197 Hamap MF_00528 Septum formation protein Maf [maf]. 3 194 28.864 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 Trebr_1419 f6a4f83f667f2ab3670f4ce1c66819ac 197 SUPERFAMILY SSF52972 3 189 6.28E-52 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Trebr_1419 f6a4f83f667f2ab3670f4ce1c66819ac 197 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 188 1.7E-48 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 Trebr_1419 f6a4f83f667f2ab3670f4ce1c66819ac 197 Pfam PF02545 Maf-like protein 4 189 1.7E-48 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 Trebr_1419 f6a4f83f667f2ab3670f4ce1c66819ac 197 Gene3D G3DSA:3.90.950.10 3 196 2.4E-57 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Trebr_0604 0746d71006721685ae48b454c1a7dcb4 316 SUPERFAMILY SSF101386 239 290 1.08E-12 T 13-10-2018 Trebr_0604 0746d71006721685ae48b454c1a7dcb4 316 Gene3D G3DSA:1.10.287.1080 4 134 3.9E-35 T 13-10-2018 Trebr_0604 0746d71006721685ae48b454c1a7dcb4 316 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 180 281 3.0E-4 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Trebr_0604 0746d71006721685ae48b454c1a7dcb4 316 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 1.3E-20 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Trebr_0604 0746d71006721685ae48b454c1a7dcb4 316 SUPERFAMILY SSF101386 146 192 2.09E-6 T 13-10-2018 Trebr_0604 0746d71006721685ae48b454c1a7dcb4 316 SUPERFAMILY SSF101386 8 108 2.13E-20 T 13-10-2018 Trebr_0604 0746d71006721685ae48b454c1a7dcb4 316 TIGRFAM TIGR00444 mazG: MazG family protein 14 192 4.2E-50 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG Trebr_2375 3da878cca88fc6e1ab9ac64c546bbb6c 257 Pfam PF04452 RNA methyltransferase 17 251 2.1E-39 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Trebr_2375 3da878cca88fc6e1ab9ac64c546bbb6c 257 SUPERFAMILY SSF75217 71 255 9.16E-24 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases Trebr_2375 3da878cca88fc6e1ab9ac64c546bbb6c 257 PIRSF PIRSF015601 1 257 1.5E-41 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Trebr_2375 3da878cca88fc6e1ab9ac64c546bbb6c 257 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 1 253 7.8E-27 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Trebr_2375 3da878cca88fc6e1ab9ac64c546bbb6c 257 Gene3D G3DSA:3.40.1280.10 6 257 2.0E-29 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Trebr_1660 309368a38d31e32754443f27f1514c46 106 SMART SM00530 6 62 1.2E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1660 309368a38d31e32754443f27f1514c46 106 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 19 67 4.2E-6 T 13-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 Trebr_1660 309368a38d31e32754443f27f1514c46 106 SUPERFAMILY SSF47413 1 68 2.36E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1660 309368a38d31e32754443f27f1514c46 106 Gene3D G3DSA:1.10.260.40 3 106 8.7E-12 T 13-10-2018 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 Pfam PF00085 Thioredoxin 4 101 2.6E-33 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 PRINTS PR00421 Thioredoxin family signature 69 80 6.5E-8 T 13-10-2018 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 PRINTS PR00421 Thioredoxin family signature 29 38 6.5E-8 T 13-10-2018 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 PRINTS PR00421 Thioredoxin family signature 21 29 6.5E-8 T 13-10-2018 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 Gene3D G3DSA:3.40.30.10 3 103 1.8E-36 T 13-10-2018 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 PIRSF PIRSF000077 1 103 2.3E-38 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 TIGRFAM TIGR01068 thioredoxin: thioredoxin 6 101 1.4E-35 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Trebr_2155 d296b882a0c936cedd5a8146f0bee7e6 103 SUPERFAMILY SSF52833 4 101 1.8E-37 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 144 4.4E-12 T 13-10-2018 IPR004176 Clp, N-terminal Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 3.0E-11 T 13-10-2018 IPR004176 Clp, N-terminal Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 202 334 3.8E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 SUPERFAMILY SSF52540 156 551 2.25E-99 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Gene3D G3DSA:3.40.50.300 556 770 1.5E-87 T 13-10-2018 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 637 655 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 SMART SM01086 772 863 3.0E-31 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Gene3D G3DSA:1.10.1780.10 1 147 4.0E-34 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 293 305 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 714 728 1.7E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 681 699 1.7E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 652 670 1.7E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 607 625 1.7E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Pfam PF07724 AAA domain (Cdc48 subfamily) 602 766 7.8E-56 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Gene3D G3DSA:1.10.8.60 772 864 5.4E-25 T 13-10-2018 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 SUPERFAMILY SSF81923 4 155 6.87E-39 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 SMART SM00382 197 342 5.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 SMART SM00382 603 747 3.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Gene3D G3DSA:3.40.50.300 342 550 3.2E-69 T 13-10-2018 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 SUPERFAMILY SSF52540 552 848 5.2E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 772 852 3.3E-24 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_1472 145af6f1029f64a5174a7b9a6aed6e1d 865 Gene3D G3DSA:3.40.50.300 148 341 2.2E-76 T 13-10-2018 Trebr_1195 70b523b86e9fcd1e4082bbeb450de70f 179 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 28 60 7.0E-8 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Trebr_1195 70b523b86e9fcd1e4082bbeb450de70f 179 SUPERFAMILY SSF52833 85 164 4.17E-6 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_1195 70b523b86e9fcd1e4082bbeb450de70f 179 Gene3D G3DSA:3.40.30.10 99 171 4.9E-6 T 13-10-2018 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 Gene3D G3DSA:3.90.740.10 194 378 1.1E-301 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 Gene3D G3DSA:1.10.730.10 6 738 1.1E-301 T 13-10-2018 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 SUPERFAMILY SSF46589 876 938 7.32E-8 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 Hamap MF_02004 Valine--tRNA ligase [valS]. 6 938 15.236 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 Gene3D G3DSA:1.10.287.380 870 938 7.6E-9 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 SUPERFAMILY SSF52374 5 605 7.41E-140 T 13-10-2018 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 Gene3D G3DSA:3.40.50.620 26 561 1.1E-301 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 62 73 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 597 2.7E-201 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 Pfam PF08264 Anticodon-binding domain of tRNA 642 817 8.2E-35 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 SUPERFAMILY SSF47323 612 888 8.78E-53 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 SUPERFAMILY SSF50677 211 377 5.76E-55 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 TIGRFAM TIGR00422 valS: valine--tRNA ligase 7 922 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 877 937 2.0E-7 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 PRINTS PR00986 Valyl-tRNA synthetase signature 481 502 5.2E-36 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 PRINTS PR00986 Valyl-tRNA synthetase signature 55 66 5.2E-36 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 PRINTS PR00986 Valyl-tRNA synthetase signature 265 282 5.2E-36 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 PRINTS PR00986 Valyl-tRNA synthetase signature 381 394 5.2E-36 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Trebr_0616 42ff5928d83f8a3668af846abab45f47 938 PRINTS PR00986 Valyl-tRNA synthetase signature 512 530 5.2E-36 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 6.2E-29 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 6.2E-29 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 6.2E-29 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 238 254 6.2E-29 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 6.2E-29 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 SUPERFAMILY SSF64307 587 669 5.36E-20 T 13-10-2018 IPR036868 TusA-like domain superfamily Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 310 1.9E-66 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 SUPERFAMILY SSF51905 5 319 2.74E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 SMART SM00450 462 557 1.9E-13 T 13-10-2018 IPR001763 Rhodanese-like domain Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 179 1.7E-17 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 393 408 1.7E-17 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 239 253 1.7E-17 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.7E-17 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 280 287 1.7E-17 T 13-10-2018 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Gene3D G3DSA:3.30.110.40 596 669 4.6E-23 T 13-10-2018 IPR036868 TusA-like domain superfamily Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 SUPERFAMILY SSF52821 441 555 2.47E-24 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 SUPERFAMILY SSF75169 706 853 4.21E-21 T 13-10-2018 IPR027396 DsrEFH-like Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Gene3D G3DSA:3.40.1260.10 702 858 1.4E-69 T 13-10-2018 IPR027396 DsrEFH-like Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Pfam PF00581 Rhodanese-like domain 470 553 1.4E-5 T 13-10-2018 IPR001763 Rhodanese-like domain Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Pfam PF01206 Sulfurtransferase TusA 600 668 7.1E-18 T 13-10-2018 IPR001455 TusA-like domain Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Pfam PF13686 DsrE/DsrF/DrsH-like family 706 857 1.2E-63 T 13-10-2018 IPR032836 DsrE2-like family Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 333 438 1.0E-13 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Gene3D G3DSA:3.50.50.60 116 446 4.3E-186 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Gene3D G3DSA:3.40.250.10 461 581 7.3E-19 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 SUPERFAMILY SSF55424 326 452 6.53E-29 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Trebr_0393 0e8e462c5334059a88b1f1ffa51728b0 858 Gene3D G3DSA:3.50.50.60 4 343 4.3E-186 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2149 b3c37d00c70a32f759d5660784dbc4da 381 SUPERFAMILY SSF111369 58 198 1.12E-9 T 13-10-2018 Trebr_2149 b3c37d00c70a32f759d5660784dbc4da 381 Gene3D G3DSA:2.40.30.170 177 259 1.1E-22 T 13-10-2018 Trebr_2149 b3c37d00c70a32f759d5660784dbc4da 381 Gene3D G3DSA:2.40.50.100 43 101 7.3E-6 T 13-10-2018 Trebr_2149 b3c37d00c70a32f759d5660784dbc4da 381 Gene3D G3DSA:1.10.287.470 104 140 1.1E-22 T 13-10-2018 Trebr_2149 b3c37d00c70a32f759d5660784dbc4da 381 Gene3D G3DSA:2.40.420.20 260 317 1.1E-22 T 13-10-2018 Trebr_2149 b3c37d00c70a32f759d5660784dbc4da 381 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 243 9.4E-18 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Trebr_2149 b3c37d00c70a32f759d5660784dbc4da 381 Gene3D G3DSA:2.40.50.100 141 176 1.1E-22 T 13-10-2018 Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 312 6.3E-124 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 8.0E-44 T 13-10-2018 IPR017861 Kae1/TsaD family Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 130 142 8.0E-44 T 13-10-2018 IPR017861 Kae1/TsaD family Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 266 275 8.0E-44 T 13-10-2018 IPR017861 Kae1/TsaD family Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 8.0E-44 T 13-10-2018 IPR017861 Kae1/TsaD family Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 8.0E-44 T 13-10-2018 IPR017861 Kae1/TsaD family Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 153 174 8.0E-44 T 13-10-2018 IPR017861 Kae1/TsaD family Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 Pfam PF00814 Glycoprotease family 23 306 5.0E-94 T 13-10-2018 IPR000905 Gcp-like domain Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 SUPERFAMILY SSF53067 1 307 9.79E-41 T 13-10-2018 Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 Gene3D G3DSA:3.30.420.40 128 293 8.7E-116 T 13-10-2018 Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 3.5E-107 T 13-10-2018 IPR017861 Kae1/TsaD family Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 Gene3D G3DSA:3.30.420.40 3 314 8.7E-116 T 13-10-2018 Trebr_1828 f5ea57bcd8de38f86ba9ef1fd3e413eb 338 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 60.519 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SMART SM00387 116 232 2.1E-37 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 216 229 3.5E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 192 210 3.5E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 175 185 3.5E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 157 171 3.5E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Gene3D G3DSA:3.40.50.2300 441 580 3.6E-34 T 13-10-2018 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Gene3D G3DSA:3.30.565.10 68 234 2.1E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SUPERFAMILY SSF47384 5 70 1.67E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SUPERFAMILY SSF55874 58 230 9.56E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SUPERFAMILY SSF47226 582 688 8.24E-19 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Pfam PF00512 His Kinase A (phospho-acceptor) domain 6 69 1.4E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Pfam PF01627 Hpt domain 605 675 9.4E-10 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SMART SM00448 266 386 1.2E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SMART SM00448 441 553 3.1E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 116 231 2.5E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Gene3D G3DSA:1.10.287.130 1 67 8.2E-17 T 13-10-2018 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SMART SM00073 593 691 0.0012 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SUPERFAMILY SSF52172 441 607 4.25E-34 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SMART SM00388 4 69 7.2E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Gene3D G3DSA:3.40.50.2300 264 392 5.8E-21 T 13-10-2018 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Pfam PF00072 Response regulator receiver domain 443 553 2.2E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Pfam PF00072 Response regulator receiver domain 268 384 5.8E-10 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 SUPERFAMILY SSF52172 264 391 3.7E-18 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_2087 ce383fd65f8eebc0de4f9b0d4c112f3f 694 Gene3D G3DSA:1.20.120.160 581 689 3.6E-16 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_1569 6b2bb92540272f358de685997f431ec8 977 PIRSF PIRSF005719 1 494 1.0E-109 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein Trebr_1569 6b2bb92540272f358de685997f431ec8 977 PIRSF PIRSF005719 478 931 4.5E-103 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein Trebr_1569 6b2bb92540272f358de685997f431ec8 977 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 926 18.621 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Trebr_1569 6b2bb92540272f358de685997f431ec8 977 Gene3D G3DSA:3.40.50.300 1 245 1.7E-56 T 13-10-2018 Trebr_1569 6b2bb92540272f358de685997f431ec8 977 Gene3D G3DSA:3.40.50.300 642 930 3.8E-47 T 13-10-2018 Trebr_1569 6b2bb92540272f358de685997f431ec8 977 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 917 4.6E-71 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Trebr_1569 6b2bb92540272f358de685997f431ec8 977 SUPERFAMILY SSF52540 2 919 1.58E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1569 6b2bb92540272f358de685997f431ec8 977 Gene3D G3DSA:1.20.5.340 291 383 1.4E-7 T 13-10-2018 Trebr_2064 157dc8abdb3988713bddcac205a83146 304 Gene3D G3DSA:3.40.50.2300 132 302 2.6E-60 T 13-10-2018 Trebr_2064 157dc8abdb3988713bddcac205a83146 304 SUPERFAMILY SSF53822 29 303 7.07E-49 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_2064 157dc8abdb3988713bddcac205a83146 304 Pfam PF13407 Periplasmic binding protein domain 34 286 3.6E-41 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_2064 157dc8abdb3988713bddcac205a83146 304 Gene3D G3DSA:3.40.50.2300 39 295 2.6E-60 T 13-10-2018 Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 Pfam PF00037 4Fe-4S binding domain 37 57 7.7E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 Gene3D G3DSA:3.30.70.20 10 58 1.7E-36 T 13-10-2018 Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 SUPERFAMILY SSF53920 43 337 7.59E-55 T 13-10-2018 IPR009016 Iron hydrogenase Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 Gene3D G3DSA:3.40.50.1780 59 244 1.7E-36 T 13-10-2018 Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 Gene3D G3DSA:3.20.20.20 372 444 3.4E-7 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 43 54 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 SUPERFAMILY SSF54862 11 71 4.19E-16 T 13-10-2018 Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 76 312 3.6E-42 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 Gene3D G3DSA:3.40.950.10 116 265 1.7E-36 T 13-10-2018 Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 14 25 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2312 1c2ae66f8565c6e4f031629e7d7cec73 584 Pfam PF04060 Putative Fe-S cluster 384 412 2.4E-8 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 Trebr_0471 5d8dc54686c8cdf6e40b13322fa752b7 592 Pfam PF00005 ABC transporter 372 521 2.8E-38 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0471 5d8dc54686c8cdf6e40b13322fa752b7 592 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0471 5d8dc54686c8cdf6e40b13322fa752b7 592 SMART SM00382 381 567 2.8E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0471 5d8dc54686c8cdf6e40b13322fa752b7 592 SUPERFAMILY SSF52540 345 591 3.52E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0471 5d8dc54686c8cdf6e40b13322fa752b7 592 Pfam PF00664 ABC transporter transmembrane region 35 310 3.6E-25 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_0471 5d8dc54686c8cdf6e40b13322fa752b7 592 Gene3D G3DSA:3.40.50.300 341 592 5.4E-90 T 13-10-2018 Trebr_0471 5d8dc54686c8cdf6e40b13322fa752b7 592 SUPERFAMILY SSF90123 21 338 1.44E-46 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_0471 5d8dc54686c8cdf6e40b13322fa752b7 592 Gene3D G3DSA:1.20.1560.10 2 340 4.3E-45 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_2043 21a1d58b6605dd8aa86c35a355cfbaa0 352 SUPERFAMILY SSF51004 33 348 2.62E-37 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Trebr_2043 21a1d58b6605dd8aa86c35a355cfbaa0 352 Gene3D G3DSA:2.130.10.10 31 349 5.4E-81 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 Gene3D G3DSA:3.40.5.10 1 61 1.2E-20 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 SUPERFAMILY SSF55658 1 57 4.88E-16 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 145 8.8E-22 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 22.908 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 SUPERFAMILY SSF55653 61 146 7.72E-20 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 43 7.8E-19 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 Gene3D G3DSA:3.10.430.100 62 149 1.7E-20 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Trebr_1429 112ea7b36d2812e5dfda9dce983a74b6 181 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 146 1.3E-39 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_0210 1ebf9e52d6d35cb5a42d9cd9f315dddf 195 Pfam PF12682 Flavodoxin 40 170 2.4E-26 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Trebr_0210 1ebf9e52d6d35cb5a42d9cd9f315dddf 195 SUPERFAMILY SSF52218 39 155 2.49E-21 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0210 1ebf9e52d6d35cb5a42d9cd9f315dddf 195 ProSitePatterns PS00201 Flavodoxin signature. 43 59 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Trebr_0210 1ebf9e52d6d35cb5a42d9cd9f315dddf 195 Gene3D G3DSA:3.40.50.360 26 193 6.3E-57 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0686 1cc6c00af6792b89912a3a02da192653 396 Pfam PF13416 Bacterial extracellular solute-binding protein 47 343 3.4E-47 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0686 1cc6c00af6792b89912a3a02da192653 396 Gene3D G3DSA:3.40.190.10 139 388 1.1E-107 T 13-10-2018 Trebr_0686 1cc6c00af6792b89912a3a02da192653 396 Gene3D G3DSA:3.40.190.10 47 356 1.1E-107 T 13-10-2018 Trebr_0686 1cc6c00af6792b89912a3a02da192653 396 PRINTS PR00181 Maltose binding protein signature 130 149 6.8E-14 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 Trebr_0686 1cc6c00af6792b89912a3a02da192653 396 PRINTS PR00181 Maltose binding protein signature 235 254 6.8E-14 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 Trebr_0686 1cc6c00af6792b89912a3a02da192653 396 PRINTS PR00181 Maltose binding protein signature 151 170 6.8E-14 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 Trebr_0686 1cc6c00af6792b89912a3a02da192653 396 PRINTS PR00181 Maltose binding protein signature 356 375 6.8E-14 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 Trebr_0686 1cc6c00af6792b89912a3a02da192653 396 SUPERFAMILY SSF53850 31 392 5.67E-76 T 13-10-2018 Trebr_0120 013d0e2a02d3db85ae565c56543d6b86 431 SUPERFAMILY SSF53850 32 426 1.25E-61 T 13-10-2018 Trebr_0120 013d0e2a02d3db85ae565c56543d6b86 431 Gene3D G3DSA:3.40.190.10 149 418 9.3E-63 T 13-10-2018 Trebr_0120 013d0e2a02d3db85ae565c56543d6b86 431 Gene3D G3DSA:3.40.190.10 57 358 9.3E-63 T 13-10-2018 Trebr_0120 013d0e2a02d3db85ae565c56543d6b86 431 Pfam PF13416 Bacterial extracellular solute-binding protein 54 329 2.4E-35 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_1681 b6d95688d251db43ff758ddb1f95012a 253 Gene3D G3DSA:3.40.50.300 8 246 1.3E-62 T 13-10-2018 Trebr_1681 b6d95688d251db43ff758ddb1f95012a 253 Pfam PF00005 ABC transporter 28 182 6.4E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1681 b6d95688d251db43ff758ddb1f95012a 253 SMART SM00382 35 232 3.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1681 b6d95688d251db43ff758ddb1f95012a 253 SUPERFAMILY SSF52540 12 236 1.24E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1834 2dddba75f5f8a1184f4ab511c2013956 349 Pfam PF04620 Flagellar filament outer layer protein Flaa 45 292 1.0E-78 T 13-10-2018 IPR006714 Flagellar filament outer layer protein FlaA GO:0030288|GO:0071973 Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 PRINTS PR00149 Fumarate lyase superfamily signature 109 127 1.3E-16 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 PRINTS PR00149 Fumarate lyase superfamily signature 288 304 1.3E-16 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 PRINTS PR00149 Fumarate lyase superfamily signature 155 173 1.3E-16 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 Pfam PF08328 Adenylosuccinate lyase C-terminal 324 439 3.3E-13 T 13-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 PRINTS PR00145 Argininosuccinate lyase family signature 243 267 1.5E-6 T 13-10-2018 Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 PRINTS PR00145 Argininosuccinate lyase family signature 150 170 1.5E-6 T 13-10-2018 Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 PRINTS PR00145 Argininosuccinate lyase family signature 288 304 1.5E-6 T 13-10-2018 Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 Pfam PF00206 Lyase 23 305 3.2E-34 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 ProSitePatterns PS00163 Fumarate lyases signature. 288 297 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 Gene3D G3DSA:1.20.200.10 111 382 6.1E-72 T 13-10-2018 Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 SMART SM00998 379 465 2.7E-5 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 Gene3D G3DSA:1.10.275.10 11 110 2.4E-7 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal Trebr_1674 77680034cc9b1ceb111a90c6ae7c1cfd 474 SUPERFAMILY SSF48557 12 433 1.45E-67 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 Trebr_0217 058a14aca487283806e9d1abfe1d35a6 309 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 109 219 9.2E-22 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Trebr_0217 058a14aca487283806e9d1abfe1d35a6 309 Gene3D G3DSA:2.40.50.100 74 145 4.9E-91 T 13-10-2018 Trebr_0217 058a14aca487283806e9d1abfe1d35a6 309 Gene3D G3DSA:2.40.420.20 51 303 4.9E-91 T 13-10-2018 Trebr_0217 058a14aca487283806e9d1abfe1d35a6 309 Gene3D G3DSA:2.40.30.170 56 231 4.9E-91 T 13-10-2018 Trebr_0217 058a14aca487283806e9d1abfe1d35a6 309 Pfam PF13533 Biotin-lipoyl like 72 107 7.7E-7 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Trebr_0217 058a14aca487283806e9d1abfe1d35a6 309 Pfam PF00529 HlyD membrane-fusion protein of T1SS 220 288 8.7E-8 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Trebr_0217 058a14aca487283806e9d1abfe1d35a6 309 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 115 302 1.4E-46 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Trebr_0217 058a14aca487283806e9d1abfe1d35a6 309 SUPERFAMILY SSF111369 60 224 2.88E-14 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 Gene3D G3DSA:1.10.3370.10 4 425 1.7E-145 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 16 420 1.2E-108 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 SUPERFAMILY SSF103491 5 419 1.24E-108 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PIRSF PIRSF004557 3 436 2.5E-115 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 308 330 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 19 37 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 362 380 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 113 136 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 398 416 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 73 93 2.6E-86 T 13-10-2018 Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 Hamap MF_01465 Protein translocase subunit SecY [secY]. 6 429 27.887 T 13-10-2018 IPR026593 Protein translocase subunit SecY Trebr_2275 182fecf15d7daa343d6039366310d2b3 439 Pfam PF00344 SecY translocase 74 413 1.4E-102 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Trebr_1882 5e58cdff4b18511dd70c2c13079fc9ce 511 SUPERFAMILY SSF53244 352 509 6.13E-18 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_1882 5e58cdff4b18511dd70c2c13079fc9ce 511 SUPERFAMILY SSF51984 24 119 1.53E-8 T 13-10-2018 Trebr_1882 5e58cdff4b18511dd70c2c13079fc9ce 511 Pfam PF08245 Mur ligase middle domain 140 332 1.9E-20 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Trebr_1882 5e58cdff4b18511dd70c2c13079fc9ce 511 Gene3D G3DSA:3.90.190.20 368 508 1.3E-25 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_1882 5e58cdff4b18511dd70c2c13079fc9ce 511 Gene3D G3DSA:3.40.50.720 23 125 7.6E-18 T 13-10-2018 Trebr_1882 5e58cdff4b18511dd70c2c13079fc9ce 511 Gene3D G3DSA:3.40.1190.10 126 350 1.5E-44 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_1882 5e58cdff4b18511dd70c2c13079fc9ce 511 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 29 507 1.1E-103 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_1882 5e58cdff4b18511dd70c2c13079fc9ce 511 SUPERFAMILY SSF53623 127 348 3.27E-35 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_2217 41edb3e397ca943b118228e612963eaa 392 SUPERFAMILY SSF55021 317 390 4.16E-13 T 13-10-2018 Trebr_2217 41edb3e397ca943b118228e612963eaa 392 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 140 167 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Trebr_2217 41edb3e397ca943b118228e612963eaa 392 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 95 274 5.7E-42 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Trebr_2217 41edb3e397ca943b118228e612963eaa 392 SUPERFAMILY SSF51735 83 274 6.73E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2217 41edb3e397ca943b118228e612963eaa 392 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 220 236 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Trebr_2217 41edb3e397ca943b118228e612963eaa 392 Gene3D G3DSA:3.40.50.720 84 278 2.1E-72 T 13-10-2018 Trebr_2217 41edb3e397ca943b118228e612963eaa 392 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 21 306 8.6E-19 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Trebr_2217 41edb3e397ca943b118228e612963eaa 392 Gene3D G3DSA:3.30.70.260 308 390 3.5E-18 T 13-10-2018 Trebr_2217 41edb3e397ca943b118228e612963eaa 392 Gene3D G3DSA:3.40.50.720 21 302 2.1E-72 T 13-10-2018 Trebr_2217 41edb3e397ca943b118228e612963eaa 392 SUPERFAMILY SSF52283 20 106 2.08E-19 T 13-10-2018 Trebr_2022 5008b82ff8b96c7270291c72492abe6c 267 Gene3D G3DSA:3.40.50.1360 1 267 9.9E-117 T 13-10-2018 Trebr_2022 5008b82ff8b96c7270291c72492abe6c 267 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 15 219 1.5E-22 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 Trebr_2022 5008b82ff8b96c7270291c72492abe6c 267 SUPERFAMILY SSF100950 1 264 2.36E-104 T 13-10-2018 IPR037171 NagB/RpiA transferase-like Trebr_2022 5008b82ff8b96c7270291c72492abe6c 267 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 39.981 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 Trebr_2022 5008b82ff8b96c7270291c72492abe6c 267 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 13-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 Trebr_2022 5008b82ff8b96c7270291c72492abe6c 267 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 6.2E-122 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 Trebr_2316 c6011a47766a15572bffd007b678616c 891 SUPERFAMILY SSF46785 828 888 4.57E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2316 c6011a47766a15572bffd007b678616c 891 Gene3D G3DSA:3.40.50.300 531 812 1.9E-103 T 13-10-2018 Trebr_2316 c6011a47766a15572bffd007b678616c 891 Pfam PF09397 Ftsk gamma domain 830 888 8.5E-30 T 13-10-2018 IPR018541 FtsK gamma domain Trebr_2316 c6011a47766a15572bffd007b678616c 891 SUPERFAMILY SSF52540 508 798 6.64E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2316 c6011a47766a15572bffd007b678616c 891 SMART SM00843 827 891 3.9E-36 T 13-10-2018 IPR018541 FtsK gamma domain Trebr_2316 c6011a47766a15572bffd007b678616c 891 Gene3D G3DSA:3.30.980.40 427 530 4.8E-31 T 13-10-2018 Trebr_2316 c6011a47766a15572bffd007b678616c 891 SMART SM00382 569 748 1.3E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2316 c6011a47766a15572bffd007b678616c 891 Pfam PF01580 FtsK/SpoIIIE family 548 672 1.4E-43 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Trebr_2316 c6011a47766a15572bffd007b678616c 891 Pfam PF01580 FtsK/SpoIIIE family 673 725 2.3E-11 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Trebr_2316 c6011a47766a15572bffd007b678616c 891 Gene3D G3DSA:1.10.10.10 826 888 1.5E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2484 db3c1a8ceb8e38c26b30626e9d928671 546 SUPERFAMILY SSF53850 49 538 3.49E-74 T 13-10-2018 Trebr_2484 db3c1a8ceb8e38c26b30626e9d928671 546 Gene3D G3DSA:3.40.190.10 72 446 7.3E-59 T 13-10-2018 Trebr_2484 db3c1a8ceb8e38c26b30626e9d928671 546 Pfam PF13416 Bacterial extracellular solute-binding protein 72 389 7.8E-42 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2484 db3c1a8ceb8e38c26b30626e9d928671 546 Gene3D G3DSA:3.40.190.10 179 534 7.3E-59 T 13-10-2018 Trebr_0861 2486a3092dbc383cbcefe82ae4b3d8af 459 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 448 1.0E-94 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Trebr_0861 2486a3092dbc383cbcefe82ae4b3d8af 459 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 12 454 2.9E-103 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Trebr_0861 2486a3092dbc383cbcefe82ae4b3d8af 459 ProSitePatterns PS00885 EPSP synthase signature 2. 354 372 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Trebr_0861 2486a3092dbc383cbcefe82ae4b3d8af 459 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 8 455 28.947 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Trebr_0861 2486a3092dbc383cbcefe82ae4b3d8af 459 PIRSF PIRSF000505 1 458 1.1E-116 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Trebr_0861 2486a3092dbc383cbcefe82ae4b3d8af 459 Gene3D G3DSA:3.65.10.10 10 449 2.7E-118 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Trebr_0861 2486a3092dbc383cbcefe82ae4b3d8af 459 SUPERFAMILY SSF55205 4 455 6.67E-99 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Trebr_0861 2486a3092dbc383cbcefe82ae4b3d8af 459 Gene3D G3DSA:3.65.10.10 20 235 2.7E-118 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Trebr_1090 9c428c2c9b8f2904d0e056d6d25a4e73 429 Gene3D G3DSA:2.30.130.10 4 84 3.4E-24 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 Trebr_1090 9c428c2c9b8f2904d0e056d6d25a4e73 429 Gene3D G3DSA:3.40.50.150 216 428 3.9E-72 T 13-10-2018 Trebr_1090 9c428c2c9b8f2904d0e056d6d25a4e73 429 SUPERFAMILY SSF53335 122 424 4.14E-66 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1090 9c428c2c9b8f2904d0e056d6d25a4e73 429 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 208 376 9.2E-26 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Trebr_1090 9c428c2c9b8f2904d0e056d6d25a4e73 429 Gene3D G3DSA:3.30.750.80 107 215 1.5E-28 T 13-10-2018 Trebr_1090 9c428c2c9b8f2904d0e056d6d25a4e73 429 SUPERFAMILY SSF88697 4 82 5.47E-7 T 13-10-2018 IPR015947 PUA-like superfamily Trebr_0459 e4f2a082e84b85528efad6ab6365241c 243 Pfam PF01966 HD domain 60 191 7.2E-15 T 13-10-2018 IPR006674 HD domain Trebr_0459 e4f2a082e84b85528efad6ab6365241c 243 SMART SM00471 53 201 2.4E-6 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_0459 e4f2a082e84b85528efad6ab6365241c 243 SUPERFAMILY SSF109604 43 230 1.19E-30 T 13-10-2018 Trebr_0459 e4f2a082e84b85528efad6ab6365241c 243 Gene3D G3DSA:1.10.3210.10 31 242 4.8E-64 T 13-10-2018 Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 Gene3D G3DSA:1.25.40.20 123 310 6.3E-37 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 SMART SM00248 244 273 0.0026 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 SMART SM00248 177 206 5.7 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 SMART SM00248 211 240 0.045 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 SUPERFAMILY SSF48403 123 301 3.73E-32 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 Pfam PF13606 Ankyrin repeat 244 273 0.0029 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 PIRSF PIRSF000654 217 310 1.9E-9 T 13-10-2018 Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 PIRSF PIRSF000654 118 238 1.5E-8 T 13-10-2018 Trebr_1150 f0f3b6caefa418f4bb3279c774cbbe74 311 Pfam PF12796 Ankyrin repeats (3 copies) 153 238 1.3E-9 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain Trebr_0634 b388eab282ed02e802cbcc78eb61bbed 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 5 141 5.9E-58 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0634 b388eab282ed02e802cbcc78eb61bbed 142 PIRSF PIRSF002181 1 142 2.6E-44 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Trebr_0634 b388eab282ed02e802cbcc78eb61bbed 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 25.234 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Trebr_0634 b388eab282ed02e802cbcc78eb61bbed 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 Trebr_0634 b388eab282ed02e802cbcc78eb61bbed 142 SUPERFAMILY SSF52161 1 139 8.37E-51 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_0634 b388eab282ed02e802cbcc78eb61bbed 142 Gene3D G3DSA:3.90.1180.10 2 142 1.2E-55 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_0634 b388eab282ed02e802cbcc78eb61bbed 142 Pfam PF00572 Ribosomal protein L13 14 138 4.4E-50 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 Gene3D G3DSA:3.40.50.300 417 590 4.8E-70 T 13-10-2018 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 422 578 7.8E-30 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 Gene3D G3DSA:3.40.50.10050 714 821 3.5E-36 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 ProSitePatterns PS01176 Initiation factor 2 signature. 871 893 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 SUPERFAMILY SSF50447 822 918 7.69E-31 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 918 16.748 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 Gene3D G3DSA:2.40.30.10 591 708 8.8E-36 T 13-10-2018 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 337 919 6.7E-259 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 SUPERFAMILY SSF50447 593 674 4.37E-22 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 Pfam PF00009 Elongation factor Tu GTP binding domain 424 580 7.3E-33 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 Gene3D G3DSA:2.40.30.10 822 919 4.1E-31 T 13-10-2018 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 344 394 7.1E-18 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 Pfam PF11987 Translation-initiation factor 2 705 809 7.2E-35 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 SUPERFAMILY SSF52156 697 827 7.59E-35 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Trebr_1970 79875f5709ccd84e8a383303dfd19af4 937 SUPERFAMILY SSF52540 417 589 1.13E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1655 4d48540ea1c3e9a18a35f3bf70ab256d 67 SUPERFAMILY SSF143011 7 66 4.58E-7 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Trebr_1655 4d48540ea1c3e9a18a35f3bf70ab256d 67 Gene3D G3DSA:3.30.2310.20 8 58 1.4E-5 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Trebr_0505 bee5ae4b9adb1b10b5eaa0909c6b73d9 679 SMART SM00283 369 602 1.1E-56 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0505 bee5ae4b9adb1b10b5eaa0909c6b73d9 679 Gene3D G3DSA:1.10.287.950 308 604 5.9E-68 T 13-10-2018 Trebr_0505 bee5ae4b9adb1b10b5eaa0909c6b73d9 679 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 421 587 6.5E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0505 bee5ae4b9adb1b10b5eaa0909c6b73d9 679 Pfam PF02743 Cache domain 42 270 4.5E-17 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_0505 bee5ae4b9adb1b10b5eaa0909c6b73d9 679 SUPERFAMILY SSF58104 344 603 9.81E-58 T 13-10-2018 Trebr_0505 bee5ae4b9adb1b10b5eaa0909c6b73d9 679 Pfam PF00672 HAMP domain 310 363 4.2E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0505 bee5ae4b9adb1b10b5eaa0909c6b73d9 679 Gene3D G3DSA:3.30.450.20 140 289 2.8E-21 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Pfam PF00575 S1 RNA binding domain 118 160 2.3E-5 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Pfam PF00575 S1 RNA binding domain 374 446 2.9E-14 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Pfam PF00575 S1 RNA binding domain 287 359 2.1E-16 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Pfam PF00575 S1 RNA binding domain 33 95 8.0E-5 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Pfam PF00575 S1 RNA binding domain 203 272 2.2E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Pfam PF00575 S1 RNA binding domain 462 535 3.8E-14 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SUPERFAMILY SSF50249 359 449 2.01E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Gene3D G3DSA:2.40.50.140 108 197 1.0E-5 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Gene3D G3DSA:2.40.50.140 368 456 3.2E-24 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Gene3D G3DSA:2.40.50.140 457 547 8.3E-20 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PRINTS PR00681 Ribosomal protein S1 signature 167 187 8.3E-48 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PRINTS PR00681 Ribosomal protein S1 signature 36 54 8.3E-48 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PRINTS PR00681 Ribosomal protein S1 signature 342 360 8.3E-48 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PRINTS PR00681 Ribosomal protein S1 signature 54 68 8.3E-48 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PRINTS PR00681 Ribosomal protein S1 signature 94 113 8.3E-48 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PRINTS PR00681 Ribosomal protein S1 signature 224 245 8.3E-48 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PRINTS PR00681 Ribosomal protein S1 signature 302 321 8.3E-48 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PRINTS PR00681 Ribosomal protein S1 signature 118 134 8.3E-48 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SUPERFAMILY SSF50249 21 122 9.29E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Gene3D G3DSA:2.40.50.140 22 107 2.4E-14 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SUPERFAMILY SSF50249 202 289 1.72E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SUPERFAMILY SSF50249 117 197 3.88E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PIRSF PIRSF002111 325 448 2.1E-46 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PIRSF PIRSF002111 1 346 6.7E-115 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 PIRSF PIRSF002111 412 555 5.8E-35 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Gene3D G3DSA:2.40.50.140 283 367 1.2E-27 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 Gene3D G3DSA:2.40.50.140 199 281 1.2E-24 T 13-10-2018 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SUPERFAMILY SSF50249 272 378 3.72E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 21 535 1.9E-196 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SMART SM00316 34 97 6.9E-10 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SMART SM00316 287 359 1.4E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SMART SM00316 113 183 0.64 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SMART SM00316 461 535 3.3E-18 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SMART SM00316 202 272 5.0E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SMART SM00316 374 446 3.3E-18 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_1720 3f3c75ea2aae60308c4ee86a8551b729 572 SUPERFAMILY SSF50249 441 551 1.86E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_2112 cbb0745b6be907bc07308a0708827e12 483 ProSitePatterns PS01276 Peptidase family U32 signature. 160 178 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Trebr_2112 cbb0745b6be907bc07308a0708827e12 483 Pfam PF01136 Peptidase family U32 78 316 1.8E-86 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Trebr_2112 cbb0745b6be907bc07308a0708827e12 483 SUPERFAMILY SSF102114 61 149 2.16E-5 T 13-10-2018 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 Gene3D G3DSA:3.10.150.10 1 242 5.0E-102 T 13-10-2018 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 SUPERFAMILY SSF55979 245 365 5.23E-31 T 13-10-2018 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 SUPERFAMILY SSF55979 128 244 1.57E-23 T 13-10-2018 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 PIRSF PIRSF000804 1 367 3.0E-106 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 365 3.8E-102 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 243 1.8E-26 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 5.0E-19 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 SUPERFAMILY SSF55979 1 119 1.61E-15 T 13-10-2018 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 SMART SM00480 17 362 6.8E-105 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 Gene3D G3DSA:3.70.10.10 138 364 5.0E-102 T 13-10-2018 Trebr_0002 9b7b9ac4708fd3cc75317d06542af7e1 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 246 365 2.8E-27 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Trebr_0281 539e69bec8ec9042734c4d2fa89c0870 677 Pfam PF02901 Pyruvate formate lyase-like 135 533 7.3E-54 T 13-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 Trebr_0281 539e69bec8ec9042734c4d2fa89c0870 677 Gene3D G3DSA:3.20.70.20 26 672 5.7E-117 T 13-10-2018 Trebr_0281 539e69bec8ec9042734c4d2fa89c0870 677 SUPERFAMILY SSF51998 90 671 7.32E-83 T 13-10-2018 Trebr_0281 539e69bec8ec9042734c4d2fa89c0870 677 Pfam PF01228 Glycine radical 576 656 3.9E-11 T 13-10-2018 IPR001150 Glycine radical domain GO:0003824 Trebr_2272 8633179c71e9122cbe0df5cf3bef2ade 126 SUPERFAMILY SSF53137 12 125 2.18E-45 T 13-10-2018 Trebr_2272 8633179c71e9122cbe0df5cf3bef2ade 126 ProSitePatterns PS00054 Ribosomal protein S11 signature. 94 116 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site Trebr_2272 8633179c71e9122cbe0df5cf3bef2ade 126 PIRSF PIRSF002131 2 126 2.5E-52 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Trebr_2272 8633179c71e9122cbe0df5cf3bef2ade 126 Gene3D G3DSA:3.30.420.80 1 126 1.1E-50 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_2272 8633179c71e9122cbe0df5cf3bef2ade 126 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 7 122 3.9E-55 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2272 8633179c71e9122cbe0df5cf3bef2ade 126 Pfam PF00411 Ribosomal protein S11 16 125 9.6E-44 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Trebr_2272 8633179c71e9122cbe0df5cf3bef2ade 126 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 5 126 31.622 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Trebr_0809 fdc2367beafa1f7c52a0a7e254d9fce7 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 15 326 1.1E-35 T 13-10-2018 IPR016040 NAD(P)-binding domain Trebr_0809 fdc2367beafa1f7c52a0a7e254d9fce7 354 Gene3D G3DSA:3.40.50.720 5 190 3.1E-48 T 13-10-2018 Trebr_0809 fdc2367beafa1f7c52a0a7e254d9fce7 354 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 7 351 4.8E-139 T 13-10-2018 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833 Trebr_0809 fdc2367beafa1f7c52a0a7e254d9fce7 354 Gene3D G3DSA:3.90.25.10 191 354 9.1E-62 T 13-10-2018 Trebr_0809 fdc2367beafa1f7c52a0a7e254d9fce7 354 SUPERFAMILY SSF51735 10 334 2.9E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Pfam PF03979 Sigma-70 factor, region 1.1 5 82 6.6E-12 T 13-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 362 598 1.7E-118 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 SUPERFAMILY SSF88659 496 598 2.8E-27 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Pfam PF00140 Sigma-70 factor, region 1.2 112 143 1.1E-13 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Gene3D G3DSA:1.10.220.120 3 63 1.1E-8 T 13-10-2018 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 SUPERFAMILY SSF88659 439 512 6.25E-21 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 362 587 5.6E-37 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Pfam PF04539 Sigma-70 region 3 445 519 1.3E-27 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 559 585 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Gene3D G3DSA:1.10.10.10 439 515 3.3E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Gene3D G3DSA:1.10.601.10 110 438 5.5E-81 T 13-10-2018 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 390 403 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Pfam PF04545 Sigma-70, region 4 535 587 3.5E-18 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 SUPERFAMILY SSF88946 111 436 9.1E-54 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 PRINTS PR00046 Major sigma-70 factor signature 414 422 4.1E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 PRINTS PR00046 Major sigma-70 factor signature 390 403 4.1E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 PRINTS PR00046 Major sigma-70 factor signature 574 585 4.1E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 PRINTS PR00046 Major sigma-70 factor signature 538 550 4.1E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 PRINTS PR00046 Major sigma-70 factor signature 559 574 4.1E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Gene3D G3DSA:1.10.10.10 516 599 5.2E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Pfam PF04542 Sigma-70 region 2 366 435 5.3E-21 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1362 8886f62aa8db8963d2fe3121db7a2230 599 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 3 599 37.435 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 Trebr_2295 17218c506da1562b918f3db61d624835 206 ProSitePatterns PS00474 Ribosomal protein L3 signature. 99 122 - T 13-10-2018 IPR019926 Ribosomal protein L3, conserved site Trebr_2295 17218c506da1562b918f3db61d624835 206 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 204 35.497 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2295 17218c506da1562b918f3db61d624835 206 Pfam PF00297 Ribosomal protein L3 95 178 1.7E-16 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2295 17218c506da1562b918f3db61d624835 206 Gene3D G3DSA:2.40.50.620 32 92 4.7E-12 T 13-10-2018 Trebr_2295 17218c506da1562b918f3db61d624835 206 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 201 1.5E-80 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2295 17218c506da1562b918f3db61d624835 206 SUPERFAMILY SSF50447 1 205 2.21E-73 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_2295 17218c506da1562b918f3db61d624835 206 Gene3D G3DSA:2.40.30.10 126 206 1.6E-15 T 13-10-2018 Trebr_0130 812687f5eb674609f9b1f1e845541e39 151 Gene3D G3DSA:3.40.1650.10 1 143 5.4E-48 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 Trebr_0130 812687f5eb674609f9b1f1e845541e39 151 SUPERFAMILY SSF102546 1 141 4.71E-41 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 Trebr_0130 812687f5eb674609f9b1f1e845541e39 151 Pfam PF05025 RbsD / FucU transport protein family 5 141 3.7E-36 T 13-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 Trebr_0293 62d2d73387760b01562bc4de0df5fede 375 Gene3D G3DSA:3.40.640.10 1 248 2.4E-78 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0293 62d2d73387760b01562bc4de0df5fede 375 PIRSF PIRSF000390 1 375 2.2E-107 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_0293 62d2d73387760b01562bc4de0df5fede 375 SUPERFAMILY SSF53383 2 374 5.85E-99 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0293 62d2d73387760b01562bc4de0df5fede 375 Gene3D G3DSA:3.90.1150.10 249 375 5.1E-28 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0293 62d2d73387760b01562bc4de0df5fede 375 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 370 4.3E-89 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_0293 62d2d73387760b01562bc4de0df5fede 375 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 374 8.6E-186 T 13-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 Trebr_1727 b29a7927c263015726686c027e8cbb20 366 Gene3D G3DSA:1.25.40.10 4 129 1.5E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1727 b29a7927c263015726686c027e8cbb20 366 SUPERFAMILY SSF48452 7 115 2.48E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 Pfam PF12833 Helix-turn-helix domain 215 294 4.5E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 SUPERFAMILY SSF46689 193 243 4.12E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 Gene3D G3DSA:1.10.10.60 243 296 4.5E-21 T 13-10-2018 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 SMART SM00342 209 292 3.0E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 Gene3D G3DSA:1.10.10.60 191 242 3.1E-9 T 13-10-2018 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 SUPERFAMILY SSF51215 34 171 3.01E-16 T 13-10-2018 IPR037923 Transcription regulator HTH-like Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 261 276 3.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 276 292 3.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 SUPERFAMILY SSF46689 245 294 1.61E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 Pfam PF02311 AraC-like ligand binding domain 27 107 1.2E-11 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Trebr_1011 cf1851827ae74f45fd2a63d5c0190323 298 Gene3D G3DSA:2.60.120.10 14 103 5.0E-12 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_1138 7b4ce373f99306df9192fd16b73f9196 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.6E-20 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Trebr_1138 7b4ce373f99306df9192fd16b73f9196 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.6E-20 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Trebr_1138 7b4ce373f99306df9192fd16b73f9196 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.6E-20 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Trebr_1138 7b4ce373f99306df9192fd16b73f9196 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 2.7E-26 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Trebr_1138 7b4ce373f99306df9192fd16b73f9196 89 PIRSF PIRSF004669 1 89 2.0E-28 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Trebr_1138 7b4ce373f99306df9192fd16b73f9196 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 6.1E-30 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 Trebr_1139 e8fe6a1e93fe1bdfa6adb8153ab9aa2f 279 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 11 262 1.9E-58 T 13-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 Trebr_1139 e8fe6a1e93fe1bdfa6adb8153ab9aa2f 279 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 209 228 6.9E-23 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Trebr_1139 e8fe6a1e93fe1bdfa6adb8153ab9aa2f 279 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 83 102 6.9E-23 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Trebr_1139 e8fe6a1e93fe1bdfa6adb8153ab9aa2f 279 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 18 39 6.9E-23 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Trebr_1139 e8fe6a1e93fe1bdfa6adb8153ab9aa2f 279 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 187 209 6.9E-23 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Trebr_1139 e8fe6a1e93fe1bdfa6adb8153ab9aa2f 279 Pfam PF01311 Bacterial export proteins, family 1 12 253 2.1E-53 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 Gene3D G3DSA:3.90.1260.10 64 354 4.0E-144 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 9 17 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 SUPERFAMILY SSF52402 4 169 3.31E-42 T 13-10-2018 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 Hamap MF_00005 Argininosuccinate synthase [argG]. 3 401 49.781 T 13-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 SUPERFAMILY SSF69864 175 402 2.35E-83 T 13-10-2018 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 117 128 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 Pfam PF00764 Arginosuccinate synthase 7 395 6.5E-149 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 Gene3D G3DSA:1.20.5.470 376 406 1.2E-10 T 13-10-2018 Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 Gene3D G3DSA:3.40.50.620 6 175 4.0E-144 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1279 3a9387853f09146b438c10c03411ef5b 421 TIGRFAM TIGR00032 argG: argininosuccinate synthase 5 397 2.7E-142 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_2527 5194239bbbb6bd2ada5c5e5523a094de 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 291 1.5E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2527 5194239bbbb6bd2ada5c5e5523a094de 303 SUPERFAMILY SSF161098 62 289 6.8E-50 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2527 5194239bbbb6bd2ada5c5e5523a094de 303 Gene3D G3DSA:1.10.3720.10 57 301 8.9E-59 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 Gene3D G3DSA:3.40.50.920 513 638 9.2E-25 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 Pfam PF02779 Transketolase, pyrimidine binding domain 325 486 1.1E-33 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 18 633 3.0E-204 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 SUPERFAMILY SSF52922 518 639 7.33E-21 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 SMART SM00861 325 488 2.7E-51 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 ProSitePatterns PS00802 Transketolase signature 2. 431 447 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 15 290 2.1E-112 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 ProSitePatterns PS00801 Transketolase signature 1. 40 59 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 SUPERFAMILY SSF52518 12 386 1.97E-71 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 Pfam PF02780 Transketolase, C-terminal domain 518 631 2.3E-22 T 13-10-2018 IPR033248 Transketolase, C-terminal domain Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 14 639 40.529 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_1163 76c21df22f8e38f946d783c4c85dd15e 639 Gene3D G3DSA:3.40.50.970 323 493 1.8E-59 T 13-10-2018 Trebr_0757 482b1e479300ea5e5b13ca3ac7d0e776 564 Pfam PF00920 Dehydratase family 31 561 2.1E-218 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Trebr_0757 482b1e479300ea5e5b13ca3ac7d0e776 564 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 119 129 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Trebr_0757 482b1e479300ea5e5b13ca3ac7d0e776 564 SUPERFAMILY SSF52016 384 563 1.96E-62 T 13-10-2018 Trebr_0757 482b1e479300ea5e5b13ca3ac7d0e776 564 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 472 483 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Trebr_0757 482b1e479300ea5e5b13ca3ac7d0e776 564 Gene3D G3DSA:3.50.30.80 384 536 2.0E-56 T 13-10-2018 Trebr_0757 482b1e479300ea5e5b13ca3ac7d0e776 564 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 564 46.476 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Trebr_0757 482b1e479300ea5e5b13ca3ac7d0e776 564 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 14 563 2.6E-229 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Trebr_0757 482b1e479300ea5e5b13ca3ac7d0e776 564 SUPERFAMILY SSF143975 3 383 1.96E-132 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Trebr_1909 2d6d818cf8fd052d7818b37289e791e5 286 SUPERFAMILY SSF53335 53 278 4.62E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1909 2d6d818cf8fd052d7818b37289e791e5 286 Gene3D G3DSA:3.40.50.150 67 284 6.4E-50 T 13-10-2018 Trebr_1909 2d6d818cf8fd052d7818b37289e791e5 286 Pfam PF01189 16S rRNA methyltransferase RsmB/F 71 223 2.9E-32 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 Trebr_1909 2d6d818cf8fd052d7818b37289e791e5 286 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 77 87 2.8E-15 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Trebr_1909 2d6d818cf8fd052d7818b37289e791e5 286 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 148 160 2.8E-15 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Trebr_1909 2d6d818cf8fd052d7818b37289e791e5 286 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 198 214 2.8E-15 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 Gene3D G3DSA:3.40.50.300 13 177 4.0E-100 T 13-10-2018 Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 SMART SM00382 37 178 1.8E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 Gene3D G3DSA:1.10.8.60 11 239 4.0E-100 T 13-10-2018 Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 SUPERFAMILY SSF52540 33 221 2.41E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 Pfam PF13177 DNA polymerase III, delta subunit 21 176 2.5E-45 T 13-10-2018 Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 235 366 1.1E-10 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 357 7.4E-135 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.4E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.4E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_2416 2b913896fde547324d7b5c14adcc1ecd 672 SUPERFAMILY SSF48019 243 364 1.45E-11 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Trebr_1847 00e628579df901e7665515cbedf27982 455 SMART SM00028 170 203 0.039 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 SMART SM00028 277 310 11.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 SMART SM00028 136 169 0.21 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 SMART SM00028 238 271 52.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 SMART SM00028 204 236 2.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 SMART SM00028 102 135 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 SUPERFAMILY SSF48452 37 166 1.04E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 Gene3D G3DSA:1.25.40.10 34 91 1.1E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 Gene3D G3DSA:1.25.40.10 237 350 9.1E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 Gene3D G3DSA:1.25.40.10 92 236 7.8E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 Pfam PF13432 Tetratricopeptide repeat 39 83 0.0011 T 13-10-2018 Trebr_1847 00e628579df901e7665515cbedf27982 455 Pfam PF13432 Tetratricopeptide repeat 175 232 1.2E-6 T 13-10-2018 Trebr_1847 00e628579df901e7665515cbedf27982 455 SUPERFAMILY SSF52980 395 452 7.51E-5 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Trebr_1847 00e628579df901e7665515cbedf27982 455 Pfam PF04471 Restriction endonuclease 360 449 1.1E-6 T 13-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 Trebr_1847 00e628579df901e7665515cbedf27982 455 Pfam PF13181 Tetratricopeptide repeat 136 167 0.044 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1847 00e628579df901e7665515cbedf27982 455 SUPERFAMILY SSF48452 133 312 3.54E-28 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Gene3D G3DSA:3.30.70.20 538 593 4.8E-14 T 13-10-2018 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Pfam PF12838 4Fe-4S dicluster domain 544 589 8.3E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 450 461 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Gene3D G3DSA:3.40.30.10 3 100 3.3E-23 T 13-10-2018 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 545 556 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Gene3D G3DSA:1.20.1440.230 435 535 7.9E-33 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Gene3D G3DSA:3.10.20.600 340 433 1.4E-33 T 13-10-2018 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 SUPERFAMILY SSF54862 538 591 4.19E-15 T 13-10-2018 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Gene3D G3DSA:3.40.50.11540 161 339 9.8E-80 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 438 522 1.1E-31 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 SUPERFAMILY SSF52833 4 94 1.23E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 SUPERFAMILY SSF142984 349 432 8.24E-26 T 13-10-2018 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 156 327 3.4E-49 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Pfam PF10531 SLBB domain 351 400 1.1E-9 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 SUPERFAMILY SSF142019 107 348 1.23E-96 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 SMART SM00928 437 482 1.9E-24 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 5 80 9.5E-8 T 13-10-2018 Trebr_0333 5ffa5d85b66b0c9c1add46a1c70f1edc 593 SUPERFAMILY SSF140490 433 534 1.06E-35 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_2248 a1d652ca7a3d2477a11253acfe3449d4 183 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 29 125 2.4E-16 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 Trebr_2248 a1d652ca7a3d2477a11253acfe3449d4 183 Pfam PF01740 STAS domain 31 127 1.3E-17 T 13-10-2018 IPR002645 STAS domain Trebr_2248 a1d652ca7a3d2477a11253acfe3449d4 183 Gene3D G3DSA:3.30.750.24 24 136 7.9E-24 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_2248 a1d652ca7a3d2477a11253acfe3449d4 183 SUPERFAMILY SSF52091 27 132 2.75E-22 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_1119 db7f414fe002ea68522a6130a893f3b9 729 ProSitePatterns PS00018 EF-hand calcium-binding domain. 220 232 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site Trebr_1119 db7f414fe002ea68522a6130a893f3b9 729 Gene3D G3DSA:3.40.50.1460 34 258 8.5E-11 T 13-10-2018 Trebr_1119 db7f414fe002ea68522a6130a893f3b9 729 Pfam PF00656 Caspase domain 37 212 8.5E-6 T 13-10-2018 Trebr_0811 e3250c328f8742ee404db110aadfa323 602 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 179 1.1E-43 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Trebr_0811 e3250c328f8742ee404db110aadfa323 602 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 202 338 8.5E-31 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Trebr_0811 e3250c328f8742ee404db110aadfa323 602 Gene3D G3DSA:3.40.50.970 369 552 1.8E-94 T 13-10-2018 Trebr_0811 e3250c328f8742ee404db110aadfa323 602 Gene3D G3DSA:3.40.50.1220 208 368 1.8E-94 T 13-10-2018 Trebr_0811 e3250c328f8742ee404db110aadfa323 602 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 402 544 1.2E-28 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Trebr_0811 e3250c328f8742ee404db110aadfa323 602 Gene3D G3DSA:3.40.50.970 1 185 1.2E-57 T 13-10-2018 Trebr_0811 e3250c328f8742ee404db110aadfa323 602 SUPERFAMILY SSF52518 378 563 6.59E-43 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0811 e3250c328f8742ee404db110aadfa323 602 SUPERFAMILY SSF52518 1 183 3.53E-44 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0811 e3250c328f8742ee404db110aadfa323 602 SUPERFAMILY SSF52467 163 366 8.4E-39 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Trebr_2237 dbba97bc80ba98cff15ef247a3bfa426 87 Gene3D G3DSA:1.10.260.40 1 64 6.3E-11 T 13-10-2018 Trebr_2237 dbba97bc80ba98cff15ef247a3bfa426 87 Pfam PF01381 Helix-turn-helix 9 61 6.2E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2237 dbba97bc80ba98cff15ef247a3bfa426 87 SUPERFAMILY SSF47413 1 63 1.18E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2237 dbba97bc80ba98cff15ef247a3bfa426 87 SMART SM00530 6 61 2.2E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0398 47b6ae453cd34210fe79c75b26a35115 695 Pfam PF00120 Glutamine synthetase, catalytic domain 187 343 2.5E-21 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Trebr_0398 47b6ae453cd34210fe79c75b26a35115 695 Gene3D G3DSA:1.20.120.1560 552 694 7.3E-41 T 13-10-2018 Trebr_0398 47b6ae453cd34210fe79c75b26a35115 695 SUPERFAMILY SSF55931 155 571 1.77E-74 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Trebr_0398 47b6ae453cd34210fe79c75b26a35115 695 SMART SM01230 164 448 6.8E-52 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Trebr_0398 47b6ae453cd34210fe79c75b26a35115 695 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 308 323 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Trebr_0398 47b6ae453cd34210fe79c75b26a35115 695 Gene3D G3DSA:3.30.590.10 170 389 6.8E-31 T 13-10-2018 Trebr_0398 47b6ae453cd34210fe79c75b26a35115 695 Pfam PF12437 Glutamine synthetase type III N terminal 6 163 3.2E-80 T 13-10-2018 IPR022147 Glutamine synthetase type III N-terminal GO:0004356 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 Gene3D G3DSA:3.40.190.290 90 296 2.0E-32 T 13-10-2018 Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 3.2E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 SUPERFAMILY SSF46785 1 84 5.21E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 Gene3D G3DSA:1.10.10.10 1 89 1.0E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 SUPERFAMILY SSF53850 87 292 5.53E-36 T 13-10-2018 Trebr_0141 de73458c0b6f31c0ac0a36da08791d01 298 Pfam PF03466 LysR substrate binding domain 86 291 5.7E-37 T 13-10-2018 IPR005119 LysR, substrate-binding Trebr_0149 08e5e4990c3b64c8cf3dee93242eadb5 247 Gene3D G3DSA:3.30.65.10 200 247 1.0E-6 T 13-10-2018 Trebr_0149 08e5e4990c3b64c8cf3dee93242eadb5 247 SUPERFAMILY SSF57783 208 245 1.87E-11 T 13-10-2018 Trebr_0149 08e5e4990c3b64c8cf3dee93242eadb5 247 Pfam PF08378 Nuclease-related domain 24 136 8.3E-28 T 13-10-2018 IPR011528 Nuclease-related domain, NERD Trebr_0149 08e5e4990c3b64c8cf3dee93242eadb5 247 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 214 246 2.8E-14 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Trebr_0028 01562fca52194f2551ee93484341c827 1033 SUPERFAMILY SSF51126 293 569 7.66E-16 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor Trebr_0028 01562fca52194f2551ee93484341c827 1033 SMART SM00710 398 420 5000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_0028 01562fca52194f2551ee93484341c827 1033 SMART SM00710 711 734 1600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_0028 01562fca52194f2551ee93484341c827 1033 SMART SM00710 823 846 1500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_0028 01562fca52194f2551ee93484341c827 1033 SMART SM00710 513 538 2100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_0028 01562fca52194f2551ee93484341c827 1033 SMART SM00710 477 508 86.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_0028 01562fca52194f2551ee93484341c827 1033 SMART SM00710 794 816 8500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_0028 01562fca52194f2551ee93484341c827 1033 SMART SM00710 850 889 6600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_0028 01562fca52194f2551ee93484341c827 1033 SMART SM00710 421 452 38.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_0028 01562fca52194f2551ee93484341c827 1033 Gene3D G3DSA:2.160.20.10 293 571 1.5E-6 T 13-10-2018 IPR012334 Pectin lyase fold Trebr_0028 01562fca52194f2551ee93484341c827 1033 SUPERFAMILY SSF51126 656 965 9.16E-10 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor Trebr_2397 9fab3d5e960d0905071e8363a1921b36 186 Gene3D G3DSA:3.40.50.360 1 186 4.7E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_2397 9fab3d5e960d0905071e8363a1921b36 186 Pfam PF03358 NADPH-dependent FMN reductase 1 127 1.3E-20 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Trebr_2397 9fab3d5e960d0905071e8363a1921b36 186 SUPERFAMILY SSF52218 1 173 2.95E-33 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0142 730ff7f98339febaf9c8197325459779 362 Pfam PF00575 S1 RNA binding domain 173 244 1.4E-15 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_0142 730ff7f98339febaf9c8197325459779 362 Pfam PF00575 S1 RNA binding domain 263 328 1.8E-13 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_0142 730ff7f98339febaf9c8197325459779 362 Gene3D G3DSA:2.40.50.140 166 249 1.8E-23 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 SUPERFAMILY SSF50249 173 259 2.09E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0142 730ff7f98339febaf9c8197325459779 362 Gene3D G3DSA:2.40.50.140 1 82 8.3E-9 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 PRINTS PR00681 Ribosomal protein S1 signature 274 293 9.3E-32 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 PRINTS PR00681 Ribosomal protein S1 signature 314 332 9.3E-32 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 PRINTS PR00681 Ribosomal protein S1 signature 196 217 9.3E-32 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 PRINTS PR00681 Ribosomal protein S1 signature 7 25 9.3E-32 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 PRINTS PR00681 Ribosomal protein S1 signature 92 108 9.3E-32 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 PRINTS PR00681 Ribosomal protein S1 signature 110 127 9.3E-32 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 PRINTS PR00681 Ribosomal protein S1 signature 25 39 9.3E-32 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 PRINTS PR00681 Ribosomal protein S1 signature 139 159 9.3E-32 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 SUPERFAMILY SSF50249 87 169 1.56E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0142 730ff7f98339febaf9c8197325459779 362 Gene3D G3DSA:2.40.50.140 87 153 5.5E-5 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 Gene3D G3DSA:2.40.50.140 251 341 2.6E-20 T 13-10-2018 Trebr_0142 730ff7f98339febaf9c8197325459779 362 SMART SM00316 174 244 8.2E-21 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_0142 730ff7f98339febaf9c8197325459779 362 SMART SM00316 5 71 1.1E-4 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_0142 730ff7f98339febaf9c8197325459779 362 SMART SM00316 87 155 8.2E-4 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_0142 730ff7f98339febaf9c8197325459779 362 SMART SM00316 259 331 7.8E-15 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_0142 730ff7f98339febaf9c8197325459779 362 SUPERFAMILY SSF50249 4 96 2.16E-10 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0142 730ff7f98339febaf9c8197325459779 362 SUPERFAMILY SSF50249 246 328 2.61E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 SMART SM01228 553 624 9.7E-37 T 13-10-2018 Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 Gene3D G3DSA:1.10.150.570 576 627 4.6E-24 T 13-10-2018 Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 303 317 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 Pfam PF13932 GidA associated domain 545 623 5.0E-24 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 Pfam PF13932 GidA associated domain 451 531 1.3E-32 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 SUPERFAMILY SSF51905 8 290 7.93E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 6 627 39.232 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 Gene3D G3DSA:3.50.50.60 332 508 8.6E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 Gene3D G3DSA:3.50.50.60 2 251 4.0E-79 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 Pfam PF01134 Glucose inhibited division protein A 9 427 3.9E-151 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Trebr_0588 dd5bd26b992071b34ea4ec0b1b077a3d 627 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 398 421 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 SUPERFAMILY SSF49452 76 180 1.93E-7 T 13-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 Gene3D G3DSA:2.60.40.10 290 407 1.2E-21 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 Pfam PF00128 Alpha amylase, catalytic domain 583 785 2.1E-6 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 Pfam PF00128 Alpha amylase, catalytic domain 454 554 7.2E-10 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 299 382 8.1E-10 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 Gene3D G3DSA:2.60.40.1180 853 941 4.4E-8 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 SUPERFAMILY SSF51445 420 844 6.3E-108 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 SMART SM00642 430 835 4.0E-9 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 Gene3D G3DSA:3.20.20.80 408 852 3.4E-158 T 13-10-2018 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 Gene3D G3DSA:2.60.40.1110 72 183 1.8E-13 T 13-10-2018 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 Pfam PF03714 Bacterial pullanase-associated domain 76 180 1.3E-10 T 13-10-2018 IPR005323 Pullulanase, carbohydrate-binding module 41 GO:0005975|GO:0030246 Trebr_0685 0f358d0f02aa26c3771c66bca8d15b31 941 SUPERFAMILY SSF81296 296 389 4.0E-11 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_1079 15bf2b3bbf3e12eb47284dcb067f320b 405 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 405 144.218 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Trebr_1079 15bf2b3bbf3e12eb47284dcb067f320b 405 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 4 405 2.7E-140 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Trebr_1079 15bf2b3bbf3e12eb47284dcb067f320b 405 Pfam PF01960 ArgJ family 16 405 8.7E-145 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Trebr_1079 15bf2b3bbf3e12eb47284dcb067f320b 405 SUPERFAMILY SSF56266 11 402 4.45E-127 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Trebr_1079 15bf2b3bbf3e12eb47284dcb067f320b 405 Gene3D G3DSA:3.10.20.340 273 405 1.5E-45 T 13-10-2018 Trebr_1079 15bf2b3bbf3e12eb47284dcb067f320b 405 Gene3D G3DSA:3.60.70.12 1 187 3.2E-67 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Trebr_1079 15bf2b3bbf3e12eb47284dcb067f320b 405 Gene3D G3DSA:3.30.2330.10 188 272 1.1E-27 T 13-10-2018 Trebr_1079 15bf2b3bbf3e12eb47284dcb067f320b 405 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 22 403 3.0E-96 T 13-10-2018 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 SUPERFAMILY SSF109998 256 437 2.85E-37 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 SUPERFAMILY SSF102735 6 134 4.58E-30 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 164 237 2.3E-8 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 TIGRFAM TIGR00115 tig: trigger factor 14 429 5.2E-111 T 13-10-2018 IPR005215 Trigger factor GO:0015031 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 Gene3D G3DSA:3.10.50.40 155 254 1.6E-65 T 13-10-2018 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 Pfam PF05697 Bacterial trigger factor protein (TF) 6 149 3.6E-36 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 270 431 1.1E-33 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 Hamap MF_00303 Trigger factor [tig]. 3 436 18.283 T 13-10-2018 IPR005215 Trigger factor GO:0015031 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 Gene3D G3DSA:3.30.70.1050 2 120 4.0E-29 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 SUPERFAMILY SSF54534 137 255 5.7E-21 T 13-10-2018 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 Gene3D G3DSA:1.10.3120.10 121 435 1.6E-65 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 Trebr_1576 0f2a3075abc0262463d945afee0c4ca3 449 PIRSF PIRSF003095 3 449 2.7E-107 T 13-10-2018 IPR005215 Trigger factor GO:0015031 Trebr_2081 0c97e1255d08c5d730ab2e5c3447f51e 279 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 1.5E-12 T 13-10-2018 Trebr_2081 0c97e1255d08c5d730ab2e5c3447f51e 279 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 270 3.0E-26 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 245 2.5E-92 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.5E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.5E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.5E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 2.3E-67 T 13-10-2018 Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 186 1.3E-4 T 13-10-2018 Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 Gene3D G3DSA:3.40.50.720 1 246 1.5E-83 T 13-10-2018 Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 SUPERFAMILY SSF51735 4 245 4.14E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 5.9E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.9E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 5.9E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.9E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 5.9E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0696 2f9812849c72c50f99ef237fdcf55126 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 5.9E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_2050 b645b3a0eb26b6136aa578659ba18795 117 Pfam PF01381 Helix-turn-helix 20 73 2.8E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2050 b645b3a0eb26b6136aa578659ba18795 117 SMART SM00530 19 74 2.9E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2050 b645b3a0eb26b6136aa578659ba18795 117 Gene3D G3DSA:1.10.260.40 15 117 4.0E-17 T 13-10-2018 Trebr_2050 b645b3a0eb26b6136aa578659ba18795 117 SUPERFAMILY SSF47413 7 77 5.12E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2278 2484a025c08946701cf59d6893d9df11 170 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 13 167 4.8E-67 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Trebr_2278 2484a025c08946701cf59d6893d9df11 170 ProSitePatterns PS00585 Ribosomal protein S5 signature. 32 64 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site Trebr_2278 2484a025c08946701cf59d6893d9df11 170 Pfam PF03719 Ribosomal protein S5, C-terminal domain 91 161 4.0E-27 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 Trebr_2278 2484a025c08946701cf59d6893d9df11 170 SUPERFAMILY SSF54211 83 163 4.8E-24 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_2278 2484a025c08946701cf59d6893d9df11 170 Pfam PF00333 Ribosomal protein S5, N-terminal domain 16 79 7.4E-28 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 Trebr_2278 2484a025c08946701cf59d6893d9df11 170 Gene3D G3DSA:3.30.160.20 7 77 1.4E-29 T 13-10-2018 Trebr_2278 2484a025c08946701cf59d6893d9df11 170 Gene3D G3DSA:3.30.230.10 78 170 1.8E-33 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_2278 2484a025c08946701cf59d6893d9df11 170 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 167 34.342 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Trebr_2278 2484a025c08946701cf59d6893d9df11 170 SUPERFAMILY SSF54768 13 80 3.35E-22 T 13-10-2018 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 Pfam PF14450 Cell division protein FtsA 6 187 3.6E-8 T 13-10-2018 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 1 420 28.091 T 13-10-2018 IPR020823 Cell division protein FtsA Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 4 378 2.6E-127 T 13-10-2018 IPR020823 Cell division protein FtsA Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 Gene3D G3DSA:3.30.420.40 197 353 2.5E-109 T 13-10-2018 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 Gene3D G3DSA:3.30.420.40 8 373 2.5E-109 T 13-10-2018 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 Pfam PF14450 Cell division protein FtsA 207 375 7.4E-20 T 13-10-2018 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 Gene3D G3DSA:3.90.640.10 235 300 2.5E-109 T 13-10-2018 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 PIRSF PIRSF003101 1 420 1.6E-130 T 13-10-2018 IPR020823 Cell division protein FtsA Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 Pfam PF02491 SHS2 domain inserted in FTSA 81 162 7.4E-31 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 SMART SM00842 5 196 1.1E-82 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 SUPERFAMILY SSF53067 3 196 2.59E-52 T 13-10-2018 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 Gene3D G3DSA:3.30.1490.110 82 169 2.5E-109 T 13-10-2018 Trebr_0952 a14d09f96270e88fa657b242dcb9b3bd 420 SUPERFAMILY SSF53067 199 377 8.87E-38 T 13-10-2018 Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 Pfam PF00005 ABC transporter 21 173 4.7E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 SUPERFAMILY SSF52540 4 233 4.98E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 ProSitePatterns PS00211 ABC transporters family signature. 408 422 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 SMART SM00382 30 221 1.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 SMART SM00382 288 483 0.19 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 Gene3D G3DSA:3.40.50.300 2 243 8.9E-56 T 13-10-2018 Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 SUPERFAMILY SSF52540 253 489 2.33E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 Gene3D G3DSA:3.40.50.300 244 504 6.2E-40 T 13-10-2018 Trebr_0538 ec478a58e8e6c2a70cfb3b86498f737e 506 Pfam PF00005 ABC transporter 279 435 5.8E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Gene3D G3DSA:3.40.50.300 583 822 3.0E-235 T 13-10-2018 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SUPERFAMILY SSF52540 34 394 4.69E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Gene3D G3DSA:3.40.50.11180 42 382 2.8E-53 T 13-10-2018 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SUPERFAMILY SSF143517 1032 1183 1.7E-31 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 184 1117 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Pfam PF02559 CarD-like/TRCF domain 521 616 3.7E-28 T 13-10-2018 IPR003711 CarD-like/TRCF domain Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SMART SM00982 1044 1144 1.1E-33 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Pfam PF00270 DEAD/DEAH box helicase 667 805 8.1E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Pfam PF00271 Helicase conserved C-terminal domain 848 950 2.8E-17 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SMART SM01058 520 617 1.4E-42 T 13-10-2018 IPR003711 CarD-like/TRCF domain Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Pfam PF03461 TRCF domain 1047 1137 1.3E-25 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Gene3D G3DSA:3.90.1150.50 1041 1184 1.4E-32 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SUPERFAMILY SSF52540 416 501 6.08E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SUPERFAMILY SSF141259 513 589 3.27E-20 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Gene3D G3DSA:2.30.30.840 524 582 3.0E-235 T 13-10-2018 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SMART SM00487 641 831 1.5E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SMART SM00490 867 951 2.4E-19 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 52 1145 27.033 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Gene3D G3DSA:3.30.2060.10 166 251 2.8E-53 T 13-10-2018 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 Gene3D G3DSA:3.40.50.300 520 1030 3.0E-235 T 13-10-2018 Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SUPERFAMILY SSF52540 565 824 2.67E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1353 5c261ebaf0221ce608ccc2ba07d30a78 1185 SUPERFAMILY SSF52540 823 1029 3.02E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0259 641b49752af22c8ee46073303871a992 605 Gene3D G3DSA:2.40.50.140 1 112 1.3E-35 T 13-10-2018 Trebr_0259 641b49752af22c8ee46073303871a992 605 SUPERFAMILY SSF55681 128 601 6.57E-105 T 13-10-2018 Trebr_0259 641b49752af22c8ee46073303871a992 605 Gene3D G3DSA:3.30.930.10 130 601 3.6E-184 T 13-10-2018 Trebr_0259 641b49752af22c8ee46073303871a992 605 Pfam PF02938 GAD domain 335 425 5.0E-20 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 Trebr_0259 641b49752af22c8ee46073303871a992 605 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 4 601 1.5E-217 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Trebr_0259 641b49752af22c8ee46073303871a992 605 SUPERFAMILY SSF55261 302 438 1.46E-22 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Trebr_0259 641b49752af22c8ee46073303871a992 605 Pfam PF01336 OB-fold nucleic acid binding domain 22 107 1.4E-14 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Trebr_0259 641b49752af22c8ee46073303871a992 605 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 5 604 32.667 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Trebr_0259 641b49752af22c8ee46073303871a992 605 SUPERFAMILY SSF50249 6 110 3.43E-31 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0259 641b49752af22c8ee46073303871a992 605 PRINTS PR01042 Aspartyl-tRNA synthetase signature 494 510 3.7E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0259 641b49752af22c8ee46073303871a992 605 PRINTS PR01042 Aspartyl-tRNA synthetase signature 538 552 3.7E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0259 641b49752af22c8ee46073303871a992 605 PRINTS PR01042 Aspartyl-tRNA synthetase signature 203 215 3.7E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0259 641b49752af22c8ee46073303871a992 605 PRINTS PR01042 Aspartyl-tRNA synthetase signature 220 233 3.7E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0259 641b49752af22c8ee46073303871a992 605 Gene3D G3DSA:3.30.1360.30 285 439 3.6E-184 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Trebr_0259 641b49752af22c8ee46073303871a992 605 Pfam PF00152 tRNA synthetases class II (D, K and N) 131 578 1.4E-105 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1662 123209c4827841fced9735f5a0df8004 870 SMART SM00533 20 323 0.0047 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Trebr_1662 123209c4827841fced9735f5a0df8004 870 Gene3D G3DSA:3.40.50.300 300 605 7.1E-74 T 13-10-2018 Trebr_1662 123209c4827841fced9735f5a0df8004 870 SUPERFAMILY SSF52540 312 518 1.33E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1662 123209c4827841fced9735f5a0df8004 870 Gene3D G3DSA:3.30.1370.110 783 868 5.3E-21 T 13-10-2018 Trebr_1662 123209c4827841fced9735f5a0df8004 870 PIRSF PIRSF005814 9 629 1.0E-167 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Trebr_1662 123209c4827841fced9735f5a0df8004 870 PIRSF PIRSF005814 603 868 2.2E-26 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Trebr_1662 123209c4827841fced9735f5a0df8004 870 SMART SM00463 790 868 2.9E-11 T 13-10-2018 IPR002625 Smr domain Trebr_1662 123209c4827841fced9735f5a0df8004 870 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 417 433 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Trebr_1662 123209c4827841fced9735f5a0df8004 870 SUPERFAMILY SSF160443 793 867 1.7E-8 T 13-10-2018 IPR036063 Smr domain superfamily Trebr_1662 123209c4827841fced9735f5a0df8004 870 SUPERFAMILY SSF48334 32 295 1.57E-12 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Trebr_1662 123209c4827841fced9735f5a0df8004 870 Pfam PF00488 MutS domain V 338 518 2.2E-34 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Trebr_1662 123209c4827841fced9735f5a0df8004 870 SMART SM00534 335 520 6.5E-72 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Trebr_1662 123209c4827841fced9735f5a0df8004 870 Pfam PF01713 Smr domain 795 867 6.0E-18 T 13-10-2018 IPR002625 Smr domain Trebr_1662 123209c4827841fced9735f5a0df8004 870 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 13 867 18.014 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Trebr_1201 0786739fa0559197722fcd75394ab048 571 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 7 535 17.399 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Trebr_1201 0786739fa0559197722fcd75394ab048 571 SUPERFAMILY SSF56317 247 517 3.53E-41 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Trebr_1201 0786739fa0559197722fcd75394ab048 571 Gene3D G3DSA:3.60.110.10 251 526 9.4E-22 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Trebr_1201 0786739fa0559197722fcd75394ab048 571 Pfam PF00795 Carbon-nitrogen hydrolase 292 521 3.9E-22 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Trebr_1201 0786739fa0559197722fcd75394ab048 571 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 497 6.0E-84 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 221 243 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 195 208 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 5 15 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 378 398 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 180 195 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 316 332 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 364 378 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 608 624 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 474 483 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR01159 DNA gyrase subunit B signature 592 604 6.0E-67 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 Gene3D G3DSA:3.40.50.670 403 638 1.1E-101 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 ProSitePatterns PS00177 DNA topoisomerase II signature. 426 434 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 Gene3D G3DSA:3.30.565.10 1 220 2.1E-88 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 638 86.384 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 567 628 1.0E-26 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 SUPERFAMILY SSF54211 222 395 1.23E-54 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 Gene3D G3DSA:3.30.230.10 221 402 4.9E-69 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 SUPERFAMILY SSF56719 398 630 5.49E-87 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 SUPERFAMILY SSF55874 5 211 3.14E-68 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 Pfam PF01751 Toprim domain 423 532 1.4E-16 T 13-10-2018 IPR006171 TOPRIM domain Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 Pfam PF00204 DNA gyrase B 222 394 1.0E-58 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 171 1.9E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 SMART SM00387 30 174 4.0E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 34 49 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 112 126 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 269 282 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 508 525 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 490 506 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 528 540 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 69 82 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 424 438 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 PRINTS PR00418 DNA topoisomerase II family signature 571 587 1.2E-70 T 13-10-2018 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 637 2.4E-299 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Trebr_2587 5dd499a324b252c4a6470694c7919bd5 638 SMART SM00433 34 632 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_1302 4438b4ca800a98658adfb0ecd15f424d 318 Gene3D G3DSA:3.10.290.10 3 72 9.4E-7 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Trebr_1302 4438b4ca800a98658adfb0ecd15f424d 318 Gene3D G3DSA:3.30.2350.10 85 310 8.9E-69 T 13-10-2018 Trebr_1302 4438b4ca800a98658adfb0ecd15f424d 318 SUPERFAMILY SSF55120 77 308 1.73E-67 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1302 4438b4ca800a98658adfb0ecd15f424d 318 Pfam PF00849 RNA pseudouridylate synthase 92 248 1.7E-33 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1302 4438b4ca800a98658adfb0ecd15f424d 318 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 29 307 1.1E-70 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_0766 6c0911f7648daf266504d5d7792bedf3 233 SUPERFAMILY SSF46894 150 226 1.19E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_0766 6c0911f7648daf266504d5d7792bedf3 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 165 226 8.0E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_0766 6c0911f7648daf266504d5d7792bedf3 233 Gene3D G3DSA:1.10.10.10 152 230 3.2E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0015 2b033c21de6b48e34fec958079b3d68c 401 SMART SM01324 317 398 4.1E-12 T 13-10-2018 IPR025582 YARHG domain Trebr_0015 2b033c21de6b48e34fec958079b3d68c 401 Gene3D G3DSA:1.20.58.1690 315 397 1.2E-17 T 13-10-2018 IPR038434 YARHG domain superfamily Trebr_0015 2b033c21de6b48e34fec958079b3d68c 401 Pfam PF13308 YARHG domain 325 398 2.6E-17 T 13-10-2018 IPR025582 YARHG domain Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 PRINTS PR00116 Arginase signature 224 253 2.1E-42 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 PRINTS PR00116 Arginase signature 259 273 2.1E-42 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 PRINTS PR00116 Arginase signature 175 193 2.1E-42 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 PRINTS PR00116 Arginase signature 94 109 2.1E-42 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 PRINTS PR00116 Arginase signature 121 148 2.1E-42 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 Pfam PF00491 Arginase family 2 297 8.2E-71 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 Gene3D G3DSA:3.40.800.10 1 302 1.3E-96 T 13-10-2018 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 TIGRFAM TIGR01229 rocF_arginase: arginase 5 300 4.9E-83 T 13-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 SUPERFAMILY SSF52768 1 298 1.03E-82 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 PIRSF PIRSF036979 1 300 3.2E-36 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 Trebr_2432 b496be1a3df0c9fa7019048ef5188f25 302 ProSitePatterns PS01053 Arginase family signature. 227 248 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Gene3D G3DSA:1.10.132.30 620 758 1.6E-63 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 SMART SM00663 224 503 3.2E-171 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 1 1380 19.032 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Gene3D G3DSA:1.10.274.100 479 543 2.2E-21 T 13-10-2018 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Pfam PF04997 RNA polymerase Rpb1, domain 1 6 331 2.2E-90 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Gene3D G3DSA:1.10.1790.20 1139 1317 2.0E-64 T 13-10-2018 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Gene3D G3DSA:1.10.274.100 544 619 1.8E-15 T 13-10-2018 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Pfam PF04983 RNA polymerase Rpb1, domain 3 478 623 4.5E-22 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Pfam PF05000 RNA polymerase Rpb1, domain 4 652 719 5.8E-17 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Gene3D G3DSA:2.40.50.100 1155 1218 2.0E-64 T 13-10-2018 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1370 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Gene3D G3DSA:1.10.40.90 363 405 1.1E-17 T 13-10-2018 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Pfam PF04998 RNA polymerase Rpb1, domain 5 734 1318 4.0E-75 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Gene3D G3DSA:2.40.50.100 1039 1130 1.1E-21 T 13-10-2018 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Pfam PF00623 RNA polymerase Rpb1, domain 2 333 379 6.8E-8 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Pfam PF00623 RNA polymerase Rpb1, domain 2 396 474 3.2E-25 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 Gene3D G3DSA:1.10.150.390 1319 1381 5.0E-27 T 13-10-2018 Trebr_2300 8b73352cfbfdf304035b2557f4d70e1a 1413 SUPERFAMILY SSF64484 6 1370 0.0 T 13-10-2018 Trebr_1566 d365b094d9e11e35f521579605b2bb58 727 Pfam PF12833 Helix-turn-helix domain 642 720 3.1E-11 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1566 d365b094d9e11e35f521579605b2bb58 727 Gene3D G3DSA:1.10.10.60 618 668 1.0E-14 T 13-10-2018 Trebr_1566 d365b094d9e11e35f521579605b2bb58 727 Gene3D G3DSA:1.10.10.60 669 725 1.6E-8 T 13-10-2018 Trebr_1566 d365b094d9e11e35f521579605b2bb58 727 SMART SM00342 636 719 1.5E-12 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1566 d365b094d9e11e35f521579605b2bb58 727 SUPERFAMILY SSF46689 621 669 1.88E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0106 90b88e8f6f600720489477d6af137ee7 116 SUPERFAMILY SSF52091 7 86 1.04E-7 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_0106 90b88e8f6f600720489477d6af137ee7 116 Pfam PF13466 STAS domain 16 90 1.6E-8 T 13-10-2018 IPR002645 STAS domain Trebr_0106 90b88e8f6f600720489477d6af137ee7 116 Gene3D G3DSA:3.30.750.24 2 93 1.4E-8 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_1703 5edf0fd93c429153d0c27a3e14dbe5f6 333 Gene3D G3DSA:1.10.132.50 42 320 2.2E-10 T 13-10-2018 Trebr_1703 5edf0fd93c429153d0c27a3e14dbe5f6 333 SUPERFAMILY SSF103486 53 324 8.89E-13 T 13-10-2018 IPR036079 V-type ATP synthase subunit C-like Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1703 5edf0fd93c429153d0c27a3e14dbe5f6 333 Gene3D G3DSA:1.20.1690.10 160 287 2.2E-10 T 13-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1703 5edf0fd93c429153d0c27a3e14dbe5f6 333 Gene3D G3DSA:1.20.1690.10 65 159 2.2E-10 T 13-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1703 5edf0fd93c429153d0c27a3e14dbe5f6 333 Pfam PF01992 ATP synthase (C/AC39) subunit 41 323 9.2E-22 T 13-10-2018 IPR002843 ATPase, V0 complex, c/d subunit Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1373 eda938c0deda59cfee1b20d02af53098 469 Pfam PF01743 Poly A polymerase head domain 24 145 4.5E-38 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Trebr_1373 eda938c0deda59cfee1b20d02af53098 469 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 172 233 2.4E-16 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Trebr_1373 eda938c0deda59cfee1b20d02af53098 469 SUPERFAMILY SSF81891 143 464 1.57E-58 T 13-10-2018 Trebr_1373 eda938c0deda59cfee1b20d02af53098 469 Pfam PF13735 tRNA nucleotidyltransferase domain 2 putative 318 463 5.1E-14 T 13-10-2018 IPR032810 CCA-adding enzyme, C-terminal Trebr_1373 eda938c0deda59cfee1b20d02af53098 469 SUPERFAMILY SSF81301 6 141 5.45E-41 T 13-10-2018 Trebr_1373 eda938c0deda59cfee1b20d02af53098 469 Gene3D G3DSA:3.30.460.10 5 144 5.4E-49 T 13-10-2018 Trebr_2438 dd89c1eccbd6649f39a1fd1a28c3414c 386 SUPERFAMILY SSF56784 11 230 1.72E-21 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_2438 dd89c1eccbd6649f39a1fd1a28c3414c 386 Pfam PF12710 haloacid dehalogenase-like hydrolase 18 215 7.8E-11 T 13-10-2018 Trebr_2438 dd89c1eccbd6649f39a1fd1a28c3414c 386 Gene3D G3DSA:3.40.50.1000 17 253 2.9E-15 T 13-10-2018 IPR023214 HAD superfamily Trebr_2021 b9715687ba6a0de1391c2a8ec363ce2c 414 Gene3D G3DSA:1.10.10.10 8 75 8.1E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2021 b9715687ba6a0de1391c2a8ec363ce2c 414 Gene3D G3DSA:3.30.420.40 285 365 7.5E-7 T 13-10-2018 Trebr_2021 b9715687ba6a0de1391c2a8ec363ce2c 414 Gene3D G3DSA:3.30.420.40 231 284 3.5E-6 T 13-10-2018 Trebr_2021 b9715687ba6a0de1391c2a8ec363ce2c 414 SUPERFAMILY SSF53067 83 362 1.47E-22 T 13-10-2018 Trebr_2021 b9715687ba6a0de1391c2a8ec363ce2c 414 Pfam PF00480 ROK family 83 255 4.9E-17 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Trebr_2021 b9715687ba6a0de1391c2a8ec363ce2c 414 SUPERFAMILY SSF46785 10 72 1.05E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2021 b9715687ba6a0de1391c2a8ec363ce2c 414 Gene3D G3DSA:3.30.420.40 82 221 7.5E-20 T 13-10-2018 Trebr_2021 b9715687ba6a0de1391c2a8ec363ce2c 414 Pfam PF01047 MarR family 14 55 3.7E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_2415 64b42d76cf6d34f60d2fa85c0fe3673b 105 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 4 103 4.6E-28 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Trebr_2415 64b42d76cf6d34f60d2fa85c0fe3673b 105 SUPERFAMILY SSF82607 9 103 5.49E-28 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Trebr_2415 64b42d76cf6d34f60d2fa85c0fe3673b 105 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 3 97 18.267 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Trebr_2415 64b42d76cf6d34f60d2fa85c0fe3673b 105 Gene3D G3DSA:3.30.1310.10 1 105 3.7E-31 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Trebr_2415 64b42d76cf6d34f60d2fa85c0fe3673b 105 Pfam PF02575 YbaB/EbfC DNA-binding family 10 99 4.3E-29 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Trebr_2415 64b42d76cf6d34f60d2fa85c0fe3673b 105 PIRSF PIRSF004555 1 105 7.2E-33 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Trebr_2560 999502a517c24bcec911c1a0e300728c 573 Pfam PF03484 tRNA synthetase B5 domain 301 363 6.5E-13 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Trebr_2560 999502a517c24bcec911c1a0e300728c 573 SUPERFAMILY SSF55681 383 573 1.37E-33 T 13-10-2018 Trebr_2560 999502a517c24bcec911c1a0e300728c 573 SUPERFAMILY SSF46955 301 364 4.21E-11 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily Trebr_2560 999502a517c24bcec911c1a0e300728c 573 Gene3D G3DSA:3.30.930.10 384 573 1.0E-39 T 13-10-2018 Trebr_2560 999502a517c24bcec911c1a0e300728c 573 Gene3D G3DSA:3.30.56.10 1 80 1.2E-19 T 13-10-2018 Trebr_2560 999502a517c24bcec911c1a0e300728c 573 SMART SM00873 110 270 1.7E-4 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Trebr_2560 999502a517c24bcec911c1a0e300728c 573 SMART SM00874 296 367 2.4E-14 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Trebr_2560 999502a517c24bcec911c1a0e300728c 573 TIGRFAM TIGR00471 pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 573 7.9E-152 T 13-10-2018 IPR004531 Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Trebr_2560 999502a517c24bcec911c1a0e300728c 573 Gene3D G3DSA:3.30.56.10 297 366 8.4E-14 T 13-10-2018 Trebr_2560 999502a517c24bcec911c1a0e300728c 573 Gene3D G3DSA:3.50.40.10 95 285 1.9E-48 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 Trebr_0168 19a88144526c0063a0a6b1e0048b3815 248 SUPERFAMILY SSF46894 144 239 1.08E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_0168 19a88144526c0063a0a6b1e0048b3815 248 Gene3D G3DSA:3.40.50.2300 1 128 1.6E-40 T 13-10-2018 Trebr_0168 19a88144526c0063a0a6b1e0048b3815 248 Gene3D G3DSA:1.10.10.10 129 241 2.3E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0168 19a88144526c0063a0a6b1e0048b3815 248 SMART SM00862 158 237 2.7E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_0168 19a88144526c0063a0a6b1e0048b3815 248 SMART SM00448 1 114 2.3E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0168 19a88144526c0063a0a6b1e0048b3815 248 Pfam PF00072 Response regulator receiver domain 3 114 4.1E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0168 19a88144526c0063a0a6b1e0048b3815 248 SUPERFAMILY SSF52172 1 126 3.7E-43 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0168 19a88144526c0063a0a6b1e0048b3815 248 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 237 2.1E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 SUPERFAMILY SSF50621 245 389 1.49E-33 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 53 71 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 Gene3D G3DSA:2.40.37.10 21 382 2.3E-96 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 PRINTS PR01182 Ornithine decarboxylase signature 51 78 2.2E-17 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 PRINTS PR01182 Ornithine decarboxylase signature 331 341 2.2E-17 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 PRINTS PR01182 Ornithine decarboxylase signature 95 119 2.2E-17 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 PRINTS PR01182 Ornithine decarboxylase signature 125 147 2.2E-17 T 13-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 SUPERFAMILY SSF51419 24 272 1.25E-62 T 13-10-2018 IPR029066 PLP-binding barrel Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 73 85 8.2E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 176 189 8.2E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 53 71 8.2E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 260 279 8.2E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 Gene3D G3DSA:3.20.20.10 32 272 2.3E-96 T 13-10-2018 IPR029066 PLP-binding barrel Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 270 367 1.0E-14 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Trebr_1989 d7bb271b3e93c7877ee3fbb45cd44052 390 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 33 269 1.2E-52 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Trebr_0384 01434fe584527a69e67a7e832a087fe7 474 SUPERFAMILY SSF109604 317 460 8.16E-9 T 13-10-2018 Trebr_0384 01434fe584527a69e67a7e832a087fe7 474 Gene3D G3DSA:1.10.3210.10 308 474 3.9E-34 T 13-10-2018 Trebr_0384 01434fe584527a69e67a7e832a087fe7 474 Pfam PF13487 HD domain 364 427 1.5E-13 T 13-10-2018 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 SUPERFAMILY SSF53697 11 517 2.6E-138 T 13-10-2018 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 PRINTS PR00662 Glucose-6-phosphate isomerase signature 454 472 1.1E-41 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 PRINTS PR00662 Glucose-6-phosphate isomerase signature 472 486 1.1E-41 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 PRINTS PR00662 Glucose-6-phosphate isomerase signature 262 280 1.1E-41 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 1.1E-41 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 PRINTS PR00662 Glucose-6-phosphate isomerase signature 340 361 1.1E-41 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 PRINTS PR00662 Glucose-6-phosphate isomerase signature 486 499 1.1E-41 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 Gene3D G3DSA:3.40.50.10490 34 494 1.0E-150 T 13-10-2018 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 Gene3D G3DSA:3.40.50.10490 98 293 1.0E-150 T 13-10-2018 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 486 503 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 266 279 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 Pfam PF00342 Phosphoglucose isomerase 53 512 8.3E-120 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 513 35.34 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1819 15374eb8f665b6339bf7dbd59714d2cb 527 Gene3D G3DSA:1.10.1390.10 495 519 1.6E-5 T 13-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0466 854b43824006ed1dc0e2b7800840fcfc 342 Gene3D G3DSA:3.40.50.2300 167 297 9.3E-28 T 13-10-2018 Trebr_0466 854b43824006ed1dc0e2b7800840fcfc 342 Gene3D G3DSA:1.10.260.40 1 47 2.9E-11 T 13-10-2018 Trebr_0466 854b43824006ed1dc0e2b7800840fcfc 342 SMART SM00354 3 74 8.3E-4 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0466 854b43824006ed1dc0e2b7800840fcfc 342 SUPERFAMILY SSF47413 2 50 1.41E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0466 854b43824006ed1dc0e2b7800840fcfc 342 SUPERFAMILY SSF53822 65 323 4.07E-32 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0466 854b43824006ed1dc0e2b7800840fcfc 342 Pfam PF13377 Periplasmic binding protein-like domain 177 337 3.4E-20 T 13-10-2018 Trebr_0466 854b43824006ed1dc0e2b7800840fcfc 342 Gene3D G3DSA:3.40.50.2300 66 311 9.3E-28 T 13-10-2018 Trebr_0466 854b43824006ed1dc0e2b7800840fcfc 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 48 8.6E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 8.4E-149 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 PRINTS PR00471 Acetate kinase family signature 174 187 6.5E-37 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 PRINTS PR00471 Acetate kinase family signature 323 339 6.5E-37 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 PRINTS PR00471 Acetate kinase family signature 3 14 6.5E-37 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 PRINTS PR00471 Acetate kinase family signature 380 392 6.5E-37 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 PRINTS PR00471 Acetate kinase family signature 204 225 6.5E-37 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 PRINTS PR00471 Acetate kinase family signature 301 314 6.5E-37 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 204 221 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 Hamap MF_00020 Acetate kinase [ackA]. 1 402 175.599 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 Gene3D G3DSA:3.30.420.40 197 409 3.3E-76 T 13-10-2018 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 Gene3D G3DSA:3.30.420.40 1 195 7.2E-67 T 13-10-2018 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 Pfam PF00871 Acetokinase family 3 391 2.2E-141 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 SUPERFAMILY SSF53067 160 399 1.53E-84 T 13-10-2018 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 PIRSF PIRSF000722 1 402 2.0E-140 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Trebr_2083 2d6ec880cc89835f6f1510ee604ec39b 444 SUPERFAMILY SSF53067 1 196 6.04E-63 T 13-10-2018 Trebr_0880 3c3cb1a2f97fcd324eae929188f0ddd2 150 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 11 139 3.9E-31 T 13-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Trebr_0880 3c3cb1a2f97fcd324eae929188f0ddd2 150 ProSitePatterns PS00550 Hemerythrin family signature. 70 93 - T 13-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Trebr_0880 3c3cb1a2f97fcd324eae929188f0ddd2 150 Gene3D G3DSA:1.20.120.50 8 142 6.6E-33 T 13-10-2018 IPR035938 Hemerythrin-like superfamily Trebr_0880 3c3cb1a2f97fcd324eae929188f0ddd2 150 SUPERFAMILY SSF47188 9 139 2.22E-29 T 13-10-2018 IPR035938 Hemerythrin-like superfamily Trebr_0880 3c3cb1a2f97fcd324eae929188f0ddd2 150 Pfam PF01814 Hemerythrin HHE cation binding domain 22 138 7.6E-11 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 SMART SM00387 349 473 3.3E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 SMART SM00304 182 234 1.1E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 Pfam PF00672 HAMP domain 182 229 4.8E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 1.1E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 430 1.1E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 416 1.1E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 472 1.1E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 SMART SM00388 235 302 1.4E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 SUPERFAMILY SSF47384 218 303 1.31E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 473 1.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 Gene3D G3DSA:3.30.565.10 322 473 8.3E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 SUPERFAMILY SSF55874 291 473 1.13E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 236 302 9.2E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 Gene3D G3DSA:1.20.1480.50 141 234 1.9E-11 T 13-10-2018 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 SUPERFAMILY SSF158472 182 231 8.24E-7 T 13-10-2018 Trebr_1003 0a42457731c1aa9350b0669b9dab4660 473 Gene3D G3DSA:1.10.287.130 235 301 2.8E-16 T 13-10-2018 Trebr_2116 3a39c47919411af06e507219209e36c6 195 SUPERFAMILY SSF46689 4 61 1.09E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_2116 3a39c47919411af06e507219209e36c6 195 Pfam PF14278 Transcriptional regulator C-terminal region 76 153 2.5E-7 T 13-10-2018 IPR039532 Transcriptional regulator TetR, C-terminal, Firmicutes type Trebr_2116 3a39c47919411af06e507219209e36c6 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 52 2.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_2116 3a39c47919411af06e507219209e36c6 195 Gene3D G3DSA:1.10.357.10 1 185 3.3E-47 T 13-10-2018 Trebr_1852 a9c0bf90c543109d74d7de95e13e6f2d 183 SUPERFAMILY SSF55874 42 108 5.37E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1852 a9c0bf90c543109d74d7de95e13e6f2d 183 Gene3D G3DSA:3.30.565.10 19 145 1.0E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1852 a9c0bf90c543109d74d7de95e13e6f2d 183 Pfam PF13581 Histidine kinase-like ATPase domain 32 111 6.5E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 ProSitePatterns PS00447 DNA polymerase family A signature. 752 771 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Gene3D G3DSA:3.40.50.1010 11 261 2.3E-86 T 13-10-2018 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 SUPERFAMILY SSF88723 4 177 3.6E-47 T 13-10-2018 IPR029060 PIN-like domain superfamily Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Gene3D G3DSA:1.10.150.20 707 850 4.3E-109 T 13-10-2018 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 SMART SM00279 180 215 2.4E-12 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Gene3D G3DSA:1.10.150.20 181 253 2.3E-86 T 13-10-2018 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 11 177 2.6E-49 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 178 261 3.1E-25 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 SUPERFAMILY SSF47807 178 287 7.48E-27 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 SUPERFAMILY SSF56672 523 926 9.23E-148 T 13-10-2018 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Gene3D G3DSA:3.30.420.10 327 541 5.5E-54 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Gene3D G3DSA:1.20.1060.10 543 656 2.5E-34 T 13-10-2018 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 SUPERFAMILY SSF53098 326 518 2.92E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 SMART SM00474 330 518 9.6E-23 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Pfam PF00476 DNA polymerase family A 551 924 2.5E-147 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 SMART SM00475 6 268 7.4E-106 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 728 741 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 752 777 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 698 721 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 843 859 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 789 800 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 676 691 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 653 675 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 873 886 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 PRINTS PR00868 DNA-polymerase family A (pol I) signature 811 822 8.4E-76 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Pfam PF01612 3'-5' exonuclease 332 517 2.2E-26 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 Gene3D G3DSA:3.30.70.370 662 922 4.3E-109 T 13-10-2018 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 TIGRFAM TIGR00593 pola: DNA polymerase I 11 926 2.7E-291 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2076 7d0d875893eedba2f0833c98dd7285fb 926 SMART SM00482 684 890 3.8E-104 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 Gene3D G3DSA:3.60.21.10 37 323 1.2E-77 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 SUPERFAMILY SSF56300 36 322 8.19E-76 T 13-10-2018 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 Pfam PF00149 Calcineurin-like phosphoesterase 42 250 1.3E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 PRINTS PR01607 Apyrase family signature 453 472 1.7E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 PRINTS PR01607 Apyrase family signature 207 224 1.7E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 PRINTS PR01607 Apyrase family signature 261 281 1.7E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 PRINTS PR01607 Apyrase family signature 383 406 1.7E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 PRINTS PR01607 Apyrase family signature 39 57 1.7E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 PRINTS PR01607 Apyrase family signature 233 256 1.7E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 Gene3D G3DSA:3.90.780.10 325 514 2.6E-50 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 Pfam PF02872 5'-nucleotidase, C-terminal domain 327 479 9.3E-36 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0065 1e080937c2390fdea8a265e4fe784bda 520 SUPERFAMILY SSF55816 321 517 7.85E-47 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_1050 c589cafc0517957b08d3b202fec2e1da 137 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 6 131 1.8E-35 T 13-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Trebr_1050 c589cafc0517957b08d3b202fec2e1da 137 Pfam PF01814 Hemerythrin HHE cation binding domain 15 129 1.2E-12 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Trebr_1050 c589cafc0517957b08d3b202fec2e1da 137 Gene3D G3DSA:1.20.120.50 1 135 1.9E-35 T 13-10-2018 IPR035938 Hemerythrin-like superfamily Trebr_1050 c589cafc0517957b08d3b202fec2e1da 137 ProSitePatterns PS00550 Hemerythrin family signature. 61 84 - T 13-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Trebr_1050 c589cafc0517957b08d3b202fec2e1da 137 SUPERFAMILY SSF47188 4 131 1.29E-31 T 13-10-2018 IPR035938 Hemerythrin-like superfamily Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 Hamap MF_00456 Glutamate 5-kinase [proB]. 11 265 33.913 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 PRINTS PR00474 Glutamate 5-kinase family signature 82 110 1.6E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 PRINTS PR00474 Glutamate 5-kinase family signature 215 235 1.6E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 PRINTS PR00474 Glutamate 5-kinase family signature 122 143 1.6E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 PRINTS PR00474 Glutamate 5-kinase family signature 154 181 1.6E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 PRINTS PR00474 Glutamate 5-kinase family signature 48 62 1.6E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 PIRSF PIRSF000729 6 266 8.0E-91 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 Gene3D G3DSA:3.40.1160.10 2 265 2.0E-78 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 Pfam PF00696 Amino acid kinase family 12 241 1.6E-44 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 TIGRFAM TIGR01027 proB: glutamate 5-kinase 12 264 1.3E-89 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Trebr_2188 7c2faa12a03d8795e1260a0f9736d11b 266 SUPERFAMILY SSF53633 11 262 2.09E-61 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_2174 a2d3fd9f2d94d89884b2b18d166924b8 343 Gene3D G3DSA:1.20.120.920 86 342 2.7E-80 T 13-10-2018 Trebr_2174 a2d3fd9f2d94d89884b2b18d166924b8 343 Pfam PF01867 CRISPR associated protein Cas1 8 298 3.8E-104 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Trebr_2174 a2d3fd9f2d94d89884b2b18d166924b8 343 Gene3D G3DSA:3.100.10.20 6 84 4.4E-16 T 13-10-2018 Trebr_2174 a2d3fd9f2d94d89884b2b18d166924b8 343 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 7 334 5.2E-84 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Trebr_2174 a2d3fd9f2d94d89884b2b18d166924b8 343 TIGRFAM TIGR03640 cas1_DVULG: CRISPR-associated endonuclease Cas1, subtype I-C/DVULG 4 342 4.8E-147 T 13-10-2018 IPR019856 CRISPR-associated protein Cas1, DVULG subtype GO:0004520|GO:0043571|GO:0046872 Trebr_2174 a2d3fd9f2d94d89884b2b18d166924b8 343 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 2 328 27.912 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 9.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 9.4E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 70 1.5E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 SUPERFAMILY SSF48008 76 199 1.12E-17 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 Gene3D G3DSA:1.20.120.530 69 209 1.6E-17 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 SUPERFAMILY SSF46785 7 74 1.3E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 SMART SM00345 12 70 1.1E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 SMART SM00895 80 204 1.4E-5 T 13-10-2018 IPR011711 GntR, C-terminal Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 Pfam PF07729 FCD domain 82 192 9.5E-12 T 13-10-2018 IPR011711 GntR, C-terminal Trebr_1448 cb3e936d200d8f652fb3fb61e8af1c5f 218 Gene3D G3DSA:1.10.10.10 1 68 8.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0224 a872322681643473ae24df2ded1417ed 586 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0224 a872322681643473ae24df2ded1417ed 586 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0224 a872322681643473ae24df2ded1417ed 586 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 9 584 1.1E-266 T 13-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 Trebr_0224 a872322681643473ae24df2ded1417ed 586 Gene3D G3DSA:3.40.50.300 8 290 6.7E-77 T 13-10-2018 Trebr_0224 a872322681643473ae24df2ded1417ed 586 Gene3D G3DSA:3.40.50.300 291 585 1.4E-68 T 13-10-2018 Trebr_0224 a872322681643473ae24df2ded1417ed 586 Pfam PF00005 ABC transporter 27 196 1.5E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0224 a872322681643473ae24df2ded1417ed 586 Pfam PF12848 ABC transporter 235 302 6.4E-9 T 13-10-2018 IPR032781 ABC-transporter extension domain Trebr_0224 a872322681643473ae24df2ded1417ed 586 SUPERFAMILY SSF52540 14 241 1.22E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0224 a872322681643473ae24df2ded1417ed 586 SUPERFAMILY SSF52540 317 551 1.29E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0224 a872322681643473ae24df2ded1417ed 586 SMART SM00382 36 241 1.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0224 a872322681643473ae24df2ded1417ed 586 SMART SM00382 353 549 2.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0224 a872322681643473ae24df2ded1417ed 586 Pfam PF00005 ABC transporter 345 504 1.5E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1099 8e5598db2cc7e988e52888bd41ef5bd0 291 Pfam PF00005 ABC transporter 69 213 5.5E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1099 8e5598db2cc7e988e52888bd41ef5bd0 291 ProSitePatterns PS00211 ABC transporters family signature. 186 200 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1099 8e5598db2cc7e988e52888bd41ef5bd0 291 SMART SM00382 78 264 1.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1099 8e5598db2cc7e988e52888bd41ef5bd0 291 Gene3D G3DSA:3.40.50.300 47 285 6.7E-51 T 13-10-2018 Trebr_1099 8e5598db2cc7e988e52888bd41ef5bd0 291 SUPERFAMILY SSF52540 55 277 2.09E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0918 068d5490dc7196aa113b30b53d9cbc2d 282 SUPERFAMILY SSF53681 109 247 7.85E-25 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0918 068d5490dc7196aa113b30b53d9cbc2d 282 SUPERFAMILY SSF53681 6 107 7.52E-26 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0918 068d5490dc7196aa113b30b53d9cbc2d 282 Pfam PF01177 Asp/Glu/Hydantoin racemase 10 217 5.7E-20 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0918 068d5490dc7196aa113b30b53d9cbc2d 282 Gene3D G3DSA:3.40.50.1860 8 221 9.1E-65 T 13-10-2018 Trebr_0918 068d5490dc7196aa113b30b53d9cbc2d 282 Hamap MF_00258 Glutamate racemase [murI]. 3 264 28.55 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0918 068d5490dc7196aa113b30b53d9cbc2d 282 TIGRFAM TIGR00067 glut_race: glutamate racemase 7 248 3.2E-50 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0918 068d5490dc7196aa113b30b53d9cbc2d 282 Gene3D G3DSA:3.40.50.1860 96 209 9.1E-65 T 13-10-2018 Trebr_0918 068d5490dc7196aa113b30b53d9cbc2d 282 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 70 78 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 Gene3D G3DSA:3.10.20.30 48 367 2.5E-145 T 13-10-2018 IPR012675 Beta-grasp domain superfamily Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 SUPERFAMILY SSF52540 3 306 1.59E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 Pfam PF01926 50S ribosome-binding GTPase 5 126 1.2E-22 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 5.6E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.6E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 5.6E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 5.6E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 SUPERFAMILY SSF81271 285 366 5.67E-35 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 369 42.434 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 PIRSF PIRSF006641 1 369 4.1E-152 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 Gene3D G3DSA:1.10.150.300 113 204 2.5E-145 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 Pfam PF06071 Protein of unknown function (DUF933) 285 368 6.9E-40 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 Gene3D G3DSA:3.40.50.300 4 284 2.5E-145 T 13-10-2018 Trebr_0772 dc42ee5e5286e5ba47f80642233a9b03 369 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 369 9.3E-139 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Trebr_0869 03220d178b904d65b294441903de04a1 581 Gene3D G3DSA:1.25.40.10 163 361 7.1E-24 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0869 03220d178b904d65b294441903de04a1 581 Pfam PF14559 Tetratricopeptide repeat 269 330 9.1E-7 T 13-10-2018 Trebr_0869 03220d178b904d65b294441903de04a1 581 SUPERFAMILY SSF48452 254 568 1.77E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0869 03220d178b904d65b294441903de04a1 581 SUPERFAMILY SSF48452 167 320 1.59E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0869 03220d178b904d65b294441903de04a1 581 Pfam PF13432 Tetratricopeptide repeat 193 255 1.4E-4 T 13-10-2018 Trebr_0869 03220d178b904d65b294441903de04a1 581 SMART SM00028 532 565 250.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0869 03220d178b904d65b294441903de04a1 581 SMART SM00028 189 222 0.004 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0869 03220d178b904d65b294441903de04a1 581 SMART SM00028 257 290 2.9 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0869 03220d178b904d65b294441903de04a1 581 Gene3D G3DSA:1.25.40.10 377 578 8.6E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Gene3D G3DSA:3.40.50.1780 65 218 5.0E-24 T 13-10-2018 Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Gene3D G3DSA:3.40.950.10 121 166 5.0E-24 T 13-10-2018 Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Pfam PF12838 4Fe-4S dicluster domain 14 63 8.5E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 83 306 1.7E-22 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Gene3D G3DSA:3.20.20.450 610 860 5.1E-83 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Pfam PF00990 Diguanylate cyclase, GGDEF domain 442 577 7.2E-12 T 13-10-2018 IPR000160 GGDEF domain Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 SUPERFAMILY SSF55073 446 597 3.14E-11 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 SMART SM00267 430 595 2.0E-5 T 13-10-2018 IPR000160 GGDEF domain Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Gene3D G3DSA:3.20.20.20 387 441 2.0E-5 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 SMART SM00052 606 851 7.5E-79 T 13-10-2018 IPR001633 EAL domain Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 SUPERFAMILY SSF141868 612 859 2.09E-75 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Pfam PF04060 Putative Fe-S cluster 402 430 7.8E-6 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Gene3D G3DSA:3.30.70.20 12 64 5.0E-24 T 13-10-2018 Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 SUPERFAMILY SSF54862 8 79 1.87E-13 T 13-10-2018 Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 SUPERFAMILY SSF53920 48 322 1.57E-35 T 13-10-2018 IPR009016 Iron hydrogenase Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Pfam PF00563 EAL domain 612 846 3.4E-67 T 13-10-2018 IPR001633 EAL domain Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 Gene3D G3DSA:3.30.70.270 442 609 1.9E-17 T 13-10-2018 Trebr_1709 8eb54413325ebe0b6119a68988cf989b 863 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 15 26 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0547 c38c7fc9fc78849b8eaecff928f46dda 182 Pfam PF07155 ECF-type riboflavin transporter, S component 3 171 6.5E-45 T 13-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 Trebr_0547 c38c7fc9fc78849b8eaecff928f46dda 182 Hamap MF_01572 UPF0397 protein . 2 182 25.263 T 13-10-2018 IPR022914 Protein of unknown function UPF0397 Trebr_0547 c38c7fc9fc78849b8eaecff928f46dda 182 Gene3D G3DSA:1.10.1760.20 1 176 1.3E-22 T 13-10-2018 Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 Pfam PF02361 Cobalt transport protein 543 761 5.5E-21 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 Gene3D G3DSA:3.40.50.300 246 476 1.4E-48 T 13-10-2018 Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 ProSitePatterns PS00211 ABC transporters family signature. 372 386 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 SUPERFAMILY SSF52540 3 223 2.39E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 SMART SM00382 274 447 4.8E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 SMART SM00382 30 203 2.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 Pfam PF00005 ABC transporter 267 400 1.3E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 SUPERFAMILY SSF52540 248 463 5.87E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 Gene3D G3DSA:3.40.50.300 1 245 2.7E-52 T 13-10-2018 Trebr_2145 c8c70e7d13e03b084adfb2c380e002ab 761 Pfam PF00005 ABC transporter 21 155 4.1E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2537 ce32821ad94650e99bfff48ce421c94f 405 Gene3D G3DSA:1.10.3210.10 1 198 1.3E-26 T 13-10-2018 Trebr_2537 ce32821ad94650e99bfff48ce421c94f 405 Gene3D G3DSA:1.10.3210.10 222 402 7.9E-45 T 13-10-2018 Trebr_2537 ce32821ad94650e99bfff48ce421c94f 405 SUPERFAMILY SSF109604 230 385 2.9E-23 T 13-10-2018 Trebr_2537 ce32821ad94650e99bfff48ce421c94f 405 SUPERFAMILY SSF109604 27 188 1.31E-15 T 13-10-2018 Trebr_2537 ce32821ad94650e99bfff48ce421c94f 405 Pfam PF13487 HD domain 290 352 9.9E-16 T 13-10-2018 Trebr_2537 ce32821ad94650e99bfff48ce421c94f 405 Pfam PF13487 HD domain 82 140 8.3E-7 T 13-10-2018 Trebr_2537 ce32821ad94650e99bfff48ce421c94f 405 SMART SM00471 23 158 1.7 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_2537 ce32821ad94650e99bfff48ce421c94f 405 SMART SM00471 235 370 0.0018 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SUPERFAMILY SSF48403 564 939 8.31E-64 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Gene3D G3DSA:1.25.40.20 23 146 1.9E-20 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 165 194 790.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 419 449 1900.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 561 590 3.7E-4 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 823 852 0.0089 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 726 755 0.087 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 252 281 3.2E-4 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 497 526 330.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 594 623 0.03 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 68 97 0.0072 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 789 819 100.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 450 489 170.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 101 130 8.3 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 198 231 250.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 285 314 3.1E-7 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 886 915 23.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 627 656 0.18 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 352 382 0.33 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 386 415 16.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 693 722 0.069 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 318 348 1400.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SMART SM00248 660 689 1.1E-5 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Gene3D G3DSA:1.25.40.20 370 465 1.9E-20 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SUPERFAMILY SSF48403 40 326 1.1E-46 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 PRINTS PR01415 Ankyrin repeat signature 301 315 2.2E-8 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 PRINTS PR01415 Ankyrin repeat signature 253 268 2.2E-8 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 SUPERFAMILY SSF48403 252 542 6.5E-57 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Gene3D G3DSA:1.25.40.20 882 940 1.7E-8 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Pfam PF12796 Ankyrin repeats (3 copies) 247 316 1.9E-15 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Pfam PF12796 Ankyrin repeats (3 copies) 768 854 2.7E-8 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Pfam PF12796 Ankyrin repeats (3 copies) 60 125 4.4E-8 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Pfam PF12796 Ankyrin repeats (3 copies) 648 722 1.3E-11 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Pfam PF12796 Ankyrin repeats (3 copies) 559 625 5.8E-11 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Pfam PF12796 Ankyrin repeats (3 copies) 332 417 1.7E-7 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Gene3D G3DSA:1.25.40.20 664 776 1.8E-28 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Gene3D G3DSA:1.25.40.960 328 369 7.2E-7 T 13-10-2018 Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Gene3D G3DSA:1.25.40.20 147 327 1.7E-37 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Gene3D G3DSA:1.25.40.20 777 881 4.9E-16 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_1484 68b27c56830e4925ef7cf92ec36f1d0f 940 Gene3D G3DSA:1.25.40.20 466 663 6.1E-44 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Trebr_0211 46198c56f9bbedc5f9f282435ded77a1 297 Gene3D G3DSA:3.90.1580.10 32 296 5.9E-79 T 13-10-2018 Trebr_0211 46198c56f9bbedc5f9f282435ded77a1 297 SUPERFAMILY SSF56436 39 296 8.01E-67 T 13-10-2018 IPR016187 C-type lectin fold Trebr_0211 46198c56f9bbedc5f9f282435ded77a1 297 Pfam PF03781 Sulfatase-modifying factor enzyme 1 39 295 6.6E-56 T 13-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 SUPERFAMILY SSF52540 12 580 7.56E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 Gene3D G3DSA:3.40.50.300 626 944 1.3E-138 T 13-10-2018 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 SMART SM00382 642 917 0.0012 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 Gene3D G3DSA:3.40.50.300 8 605 1.0E-244 T 13-10-2018 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 Hamap MF_00205 UvrABC system protein A [uvrA]. 4 949 22.731 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 Gene3D G3DSA:3.30.190.20 133 242 1.0E-244 T 13-10-2018 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 Gene3D G3DSA:1.20.1580.10 701 839 1.3E-138 T 13-10-2018 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 ProSitePatterns PS00211 ABC transporters family signature. 498 512 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 SUPERFAMILY SSF52540 631 922 7.45E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 ProSitePatterns PS00211 ABC transporters family signature. 839 853 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 Gene3D G3DSA:1.20.1580.10 93 503 1.0E-244 T 13-10-2018 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 Gene3D G3DSA:1.10.8.280 298 414 1.0E-244 T 13-10-2018 Trebr_0845 29f8432cdd9cb9b4ea7b4c4b6d44c746 956 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 934 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Trebr_2192 dbeb337a6bb89ab2e2a757c4d8c2a7d0 337 SUPERFAMILY SSF53328 2 219 6.67E-44 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Trebr_2192 dbeb337a6bb89ab2e2a757c4d8c2a7d0 337 SUPERFAMILY SSF50486 218 331 1.88E-27 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 Trebr_2192 dbeb337a6bb89ab2e2a757c4d8c2a7d0 337 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 3 325 1.1E-69 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Trebr_2192 dbeb337a6bb89ab2e2a757c4d8c2a7d0 337 Pfam PF00551 Formyl transferase 18 191 7.4E-31 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Trebr_2192 dbeb337a6bb89ab2e2a757c4d8c2a7d0 337 Gene3D G3DSA:3.10.25.10 220 332 1.1E-30 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Trebr_2192 dbeb337a6bb89ab2e2a757c4d8c2a7d0 337 Pfam PF02911 Formyl transferase, C-terminal domain 218 325 4.5E-27 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Trebr_2192 dbeb337a6bb89ab2e2a757c4d8c2a7d0 337 Gene3D G3DSA:3.40.50.170 1 219 5.0E-56 T 13-10-2018 Trebr_2192 dbeb337a6bb89ab2e2a757c4d8c2a7d0 337 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 2 328 27.886 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 ProSitePatterns PS00801 Transketolase signature 1. 28 47 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 Gene3D G3DSA:3.40.50.970 284 457 2.2E-39 T 13-10-2018 Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 Gene3D G3DSA:3.40.50.970 1 251 4.8E-75 T 13-10-2018 Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 SUPERFAMILY SSF52922 464 590 3.14E-21 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 SUPERFAMILY SSF52518 3 348 6.86E-63 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 Pfam PF02780 Transketolase, C-terminal domain 466 582 2.1E-18 T 13-10-2018 IPR033248 Transketolase, C-terminal domain Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 Gene3D G3DSA:3.40.50.920 464 591 5.9E-24 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 Pfam PF02779 Transketolase, pyrimidine binding domain 285 444 3.9E-20 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 199 242 4.6E-6 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 3 193 2.3E-76 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 SMART SM00861 285 451 2.1E-31 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Trebr_0136 4eb3786502ca6e406295d738a72fddac 591 SUPERFAMILY SSF52518 313 444 5.24E-14 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_1281 2b65e031a32419221651904c847fa21a 661 SUPERFAMILY SSF51569 1 340 8.24E-110 T 13-10-2018 Trebr_1281 2b65e031a32419221651904c847fa21a 661 SUPERFAMILY SSF55021 573 657 4.93E-20 T 13-10-2018 Trebr_1281 2b65e031a32419221651904c847fa21a 661 Gene3D G3DSA:3.40.190.10 372 545 3.8E-50 T 13-10-2018 Trebr_1281 2b65e031a32419221651904c847fa21a 661 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 70 331 1.4E-116 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Trebr_1281 2b65e031a32419221651904c847fa21a 661 Gene3D G3DSA:3.30.70.260 567 659 7.2E-23 T 13-10-2018 Trebr_1281 2b65e031a32419221651904c847fa21a 661 Pfam PF00793 DAHP synthetase I family 88 326 9.2E-76 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Trebr_1281 2b65e031a32419221651904c847fa21a 661 Pfam PF00800 Prephenate dehydratase 371 548 9.5E-54 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Trebr_1281 2b65e031a32419221651904c847fa21a 661 Gene3D G3DSA:3.20.20.70 75 334 7.7E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1281 2b65e031a32419221651904c847fa21a 661 Gene3D G3DSA:3.30.70.1140 1 74 3.4E-20 T 13-10-2018 Trebr_1281 2b65e031a32419221651904c847fa21a 661 Gene3D G3DSA:3.40.190.10 451 537 3.8E-50 T 13-10-2018 Trebr_1281 2b65e031a32419221651904c847fa21a 661 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 601 608 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Trebr_1281 2b65e031a32419221651904c847fa21a 661 SUPERFAMILY SSF53850 370 551 6.51E-50 T 13-10-2018 Trebr_0689 0c4675775506b86bef55ad95785f2620 553 SUPERFAMILY SSF51445 54 470 2.27E-102 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0689 0c4675775506b86bef55ad95785f2620 553 Gene3D G3DSA:3.90.400.10 166 232 1.6E-140 T 13-10-2018 Trebr_0689 0c4675775506b86bef55ad95785f2620 553 SUPERFAMILY SSF51011 473 549 4.64E-7 T 13-10-2018 Trebr_0689 0c4675775506b86bef55ad95785f2620 553 Gene3D G3DSA:3.20.20.80 59 464 1.6E-140 T 13-10-2018 Trebr_0689 0c4675775506b86bef55ad95785f2620 553 SMART SM00642 61 447 5.1E-95 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0689 0c4675775506b86bef55ad95785f2620 553 Pfam PF00128 Alpha amylase, catalytic domain 76 408 5.8E-72 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_1712 ef0d53047c85476953df2609af600e68 452 SUPERFAMILY SSF48256 43 440 1.96E-93 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Trebr_1712 ef0d53047c85476953df2609af600e68 452 PRINTS PR00143 Citrate synthase signature 254 282 2.8E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_1712 ef0d53047c85476953df2609af600e68 452 PRINTS PR00143 Citrate synthase signature 404 418 2.8E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_1712 ef0d53047c85476953df2609af600e68 452 PRINTS PR00143 Citrate synthase signature 175 188 2.8E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_1712 ef0d53047c85476953df2609af600e68 452 PRINTS PR00143 Citrate synthase signature 384 400 2.8E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_1712 ef0d53047c85476953df2609af600e68 452 PRINTS PR00143 Citrate synthase signature 231 246 2.8E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_1712 ef0d53047c85476953df2609af600e68 452 Gene3D G3DSA:1.10.230.10 280 398 1.5E-110 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Trebr_1712 ef0d53047c85476953df2609af600e68 452 PIRSF PIRSF001369 57 452 6.2E-86 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type Trebr_1712 ef0d53047c85476953df2609af600e68 452 Gene3D G3DSA:1.10.580.10 70 423 1.5E-110 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Trebr_1712 ef0d53047c85476953df2609af600e68 452 Pfam PF00285 Citrate synthase, C-terminal domain 43 435 9.3E-116 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 13-10-2018 IPR018080 Band 7/stomatin-like, conserved site Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 PRINTS PR00721 Stomatin signature 128 151 3.7E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 PRINTS PR00721 Stomatin signature 171 192 3.7E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 PRINTS PR00721 Stomatin signature 152 170 3.7E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 PRINTS PR00721 Stomatin signature 108 125 3.7E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 PRINTS PR00721 Stomatin signature 73 94 3.7E-34 T 13-10-2018 IPR001972 Stomatin family GO:0016020 Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 Gene3D G3DSA:3.30.479.30 46 178 6.0E-46 T 13-10-2018 Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 Pfam PF01145 SPFH domain / Band 7 family 22 192 1.7E-32 T 13-10-2018 IPR001107 Band 7 domain Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 SMART SM00244 18 176 4.1E-55 T 13-10-2018 IPR001107 Band 7 domain Trebr_1894 93f8fbe7c139f2f581939ccbaca1a129 294 SUPERFAMILY SSF117892 49 183 3.27E-41 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily Trebr_2381 9a998276ad65f23aad8dd3d28043c202 588 SMART SM00257 539 586 1.9E-6 T 13-10-2018 IPR018392 LysM domain Trebr_2381 9a998276ad65f23aad8dd3d28043c202 588 SUPERFAMILY SSF100920 2 105 5.62E-17 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Trebr_2381 9a998276ad65f23aad8dd3d28043c202 588 Pfam PF01476 LysM domain 540 586 1.3E-8 T 13-10-2018 IPR018392 LysM domain Trebr_2381 9a998276ad65f23aad8dd3d28043c202 588 SUPERFAMILY SSF54106 538 586 1.24E-6 T 13-10-2018 Trebr_2381 9a998276ad65f23aad8dd3d28043c202 588 Gene3D G3DSA:2.60.34.10 1 125 4.9E-16 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Trebr_2381 9a998276ad65f23aad8dd3d28043c202 588 Gene3D G3DSA:3.10.350.10 534 588 7.7E-10 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_2381 9a998276ad65f23aad8dd3d28043c202 588 Pfam PF00012 Hsp70 protein 6 117 1.1E-6 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_2385 e05969324708286c111a03518fae28e4 159 Gene3D G3DSA:2.30.30.40 24 96 3.6E-7 T 13-10-2018 Trebr_2385 e05969324708286c111a03518fae28e4 159 SMART SM00287 23 88 8.5E-6 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 Gene3D G3DSA:3.40.190.10 159 198 5.6E-16 T 13-10-2018 Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 4.4E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 SUPERFAMILY SSF46785 6 87 9.52E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 Pfam PF03466 LysR substrate binding domain 114 194 1.4E-13 T 13-10-2018 IPR005119 LysR, substrate-binding Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 SUPERFAMILY SSF53850 92 269 1.6E-13 T 13-10-2018 Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 Gene3D G3DSA:3.40.190.10 99 158 5.6E-16 T 13-10-2018 Trebr_0198 a38621664ea209bb58c1a8b51539f460 284 Gene3D G3DSA:1.10.10.10 1 89 2.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0957 db82a8c75520105945003f58400677b0 719 Gene3D G3DSA:1.10.460.10 152 563 4.2E-151 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Trebr_0957 db82a8c75520105945003f58400677b0 719 SMART SM00436 121 209 9.2E-52 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 Gene3D G3DSA:1.10.290.10 267 400 4.2E-151 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Trebr_0957 db82a8c75520105945003f58400677b0 719 Pfam PF01751 Toprim domain 20 130 5.9E-29 T 13-10-2018 IPR006171 TOPRIM domain Trebr_0957 db82a8c75520105945003f58400677b0 719 SMART SM00437 259 523 4.0E-108 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 Gene3D G3DSA:3.40.50.140 14 151 4.9E-50 T 13-10-2018 Trebr_0957 db82a8c75520105945003f58400677b0 719 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 21 625 1.6E-245 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 296 318 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Trebr_0957 db82a8c75520105945003f58400677b0 719 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 309 318 2.7E-33 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 486 500 2.7E-33 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 385 401 2.7E-33 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 179 197 2.7E-33 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 93 106 2.7E-33 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 Gene3D G3DSA:3.30.65.10 584 632 8.1E-14 T 13-10-2018 Trebr_0957 db82a8c75520105945003f58400677b0 719 Hamap MF_00952 DNA topoisomerase 1 [topA]. 19 655 52.302 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 SMART SM00493 19 119 1.8E-30 T 13-10-2018 IPR006171 TOPRIM domain Trebr_0957 db82a8c75520105945003f58400677b0 719 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 591 626 7.4E-14 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Trebr_0957 db82a8c75520105945003f58400677b0 719 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 672 704 2.5E-7 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Trebr_0957 db82a8c75520105945003f58400677b0 719 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 633 668 7.3E-10 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Trebr_0957 db82a8c75520105945003f58400677b0 719 SUPERFAMILY SSF57783 590 626 2.72E-12 T 13-10-2018 Trebr_0957 db82a8c75520105945003f58400677b0 719 Gene3D G3DSA:2.70.20.10 201 470 4.2E-151 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Trebr_0957 db82a8c75520105945003f58400677b0 719 Pfam PF01131 DNA topoisomerase 145 560 5.5E-123 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Trebr_0957 db82a8c75520105945003f58400677b0 719 SUPERFAMILY SSF56712 20 602 1.7E-184 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Trebr_0052 37219e3ccaa82a61e3c5809070e2e8ed 212 SMART SM01007 8 184 4.2E-59 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal Trebr_0052 37219e3ccaa82a61e3c5809070e2e8ed 212 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 184 9.3E-47 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal Trebr_0052 37219e3ccaa82a61e3c5809070e2e8ed 212 Gene3D G3DSA:3.40.225.10 2 212 4.0E-72 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Trebr_0052 37219e3ccaa82a61e3c5809070e2e8ed 212 SUPERFAMILY SSF53639 3 211 3.14E-62 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 SUPERFAMILY SSF56634 6 485 1.83E-194 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 Pfam PF06628 Catalase-related immune-responsive 417 477 6.6E-15 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 333 341 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 Gene3D G3DSA:2.40.180.10 4 486 2.2E-210 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 PRINTS PR00067 Catalase signature 21 44 2.0E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 PRINTS PR00067 Catalase signature 83 101 2.0E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 PRINTS PR00067 Catalase signature 123 141 2.0E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 PRINTS PR00067 Catalase signature 288 315 2.0E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 PRINTS PR00067 Catalase signature 104 121 2.0E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 PRINTS PR00067 Catalase signature 320 346 2.0E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 PIRSF PIRSF038928 1 483 4.5E-210 T 13-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 SMART SM01060 8 391 6.5E-262 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_0386 09ab73f7da9f20a72e43e70d1d6391d2 504 Pfam PF00199 Catalase 8 387 3.0E-177 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 Gene3D G3DSA:1.10.220.30 128 222 1.4E-11 T 13-10-2018 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 Pfam PF14842 FliG N-terminal domain 131 225 9.4E-21 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 Gene3D G3DSA:1.10.220.30 227 314 8.5E-17 T 13-10-2018 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 PRINTS PR00954 Flagellar motor switch protein FliG signature 236 259 7.2E-29 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 PRINTS PR00954 Flagellar motor switch protein FliG signature 394 420 7.2E-29 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 PRINTS PR00954 Flagellar motor switch protein FliG signature 129 145 7.2E-29 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 PRINTS PR00954 Flagellar motor switch protein FliG signature 317 342 7.2E-29 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 PRINTS PR00954 Flagellar motor switch protein FliG signature 158 184 7.2E-29 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 PRINTS PR00954 Flagellar motor switch protein FliG signature 348 368 7.2E-29 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 PRINTS PR00954 Flagellar motor switch protein FliG signature 370 390 7.2E-29 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 SUPERFAMILY SSF48029 238 447 2.75E-40 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 Pfam PF14841 FliG middle domain 239 310 6.4E-15 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 Pfam PF01706 FliG C-terminal domain 340 446 3.5E-24 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 SUPERFAMILY SSF48029 132 244 4.71E-14 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Trebr_1733 38ec63aa7e294a2e715108020d82d96b 455 Gene3D G3DSA:1.10.220.30 318 455 1.6E-29 T 13-10-2018 Trebr_1770 1ea3417e277075d87fdf761a1cd92ccc 185 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 184 22.748 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Trebr_1770 1ea3417e277075d87fdf761a1cd92ccc 185 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 96 8.0E-16 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Trebr_1770 1ea3417e277075d87fdf761a1cd92ccc 185 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 102 184 2.9E-20 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain Trebr_1770 1ea3417e277075d87fdf761a1cd92ccc 185 SUPERFAMILY SSF50715 11 184 1.92E-43 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Trebr_1770 1ea3417e277075d87fdf761a1cd92ccc 185 Gene3D G3DSA:2.40.240.10 4 96 2.4E-21 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Trebr_1770 1ea3417e277075d87fdf761a1cd92ccc 185 Pfam PF01386 Ribosomal L25p family 7 93 5.3E-18 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Trebr_1770 1ea3417e277075d87fdf761a1cd92ccc 185 Gene3D G3DSA:2.170.120.20 98 185 1.0E-20 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal Trebr_1770 1ea3417e277075d87fdf761a1cd92ccc 185 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 8 181 1.0E-45 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 SUPERFAMILY SSF53335 73 264 4.65E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 Gene3D G3DSA:3.40.50.150 72 270 5.2E-60 T 13-10-2018 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 PIRSF PIRSF000410 1 270 1.2E-78 T 13-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 PRINTS PR00996 Glutamate methyltransferase family signature 207 221 5.4E-44 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 PRINTS PR00996 Glutamate methyltransferase family signature 226 249 5.4E-44 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 PRINTS PR00996 Glutamate methyltransferase family signature 29 42 5.4E-44 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 PRINTS PR00996 Glutamate methyltransferase family signature 108 128 5.4E-44 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 PRINTS PR00996 Glutamate methyltransferase family signature 141 157 5.4E-44 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 PRINTS PR00996 Glutamate methyltransferase family signature 66 78 5.4E-44 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 Pfam PF03705 CheR methyltransferase, all-alpha domain 8 60 6.4E-14 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 Gene3D G3DSA:1.10.155.10 2 71 8.7E-15 T 13-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 SUPERFAMILY SSF47757 5 72 3.27E-15 T 13-10-2018 Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 Pfam PF01739 CheR methyltransferase, SAM binding domain 73 264 1.7E-66 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Trebr_0719 0ba78fb35c5ffae112ba671026a1ada0 272 SMART SM00138 7 267 1.6E-104 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0097 6ea603e360bb6c336899032800af254f 338 Pfam PF00107 Zinc-binding dehydrogenase 171 297 9.8E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Trebr_0097 6ea603e360bb6c336899032800af254f 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 131 1.3E-30 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Trebr_0097 6ea603e360bb6c336899032800af254f 338 SUPERFAMILY SSF51735 134 302 5.05E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0097 6ea603e360bb6c336899032800af254f 338 SMART SM00829 13 335 3.0E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Trebr_0097 6ea603e360bb6c336899032800af254f 338 Gene3D G3DSA:3.90.180.10 11 321 5.6E-93 T 13-10-2018 Trebr_0097 6ea603e360bb6c336899032800af254f 338 Gene3D G3DSA:3.40.50.720 148 283 5.6E-93 T 13-10-2018 Trebr_0097 6ea603e360bb6c336899032800af254f 338 SUPERFAMILY SSF50129 1 170 1.07E-49 T 13-10-2018 IPR011032 GroES-like superfamily Trebr_0268 cd194da345844f076870094eff06a941 607 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 385 543 1.6E-27 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0268 cd194da345844f076870094eff06a941 607 SMART SM00283 316 556 4.7E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0268 cd194da345844f076870094eff06a941 607 Gene3D G3DSA:1.10.287.950 319 587 7.3E-42 T 13-10-2018 Trebr_0268 cd194da345844f076870094eff06a941 607 Gene3D G3DSA:1.10.287.950 221 318 7.3E-7 T 13-10-2018 Trebr_0268 cd194da345844f076870094eff06a941 607 SUPERFAMILY SSF58104 241 579 3.14E-44 T 13-10-2018 Trebr_0268 cd194da345844f076870094eff06a941 607 SMART SM00304 219 273 0.0069 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 SMART SM01383 42 118 5.2E-43 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 Gene3D G3DSA:2.30.30.30 118 196 3.5E-30 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 PIRSF PIRSF002158 15 274 6.2E-94 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 SUPERFAMILY SSF50104 126 269 1.75E-57 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 249 1.6E-53 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 Gene3D G3DSA:2.40.50.140 1 114 6.7E-42 T 13-10-2018 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 2.3E-31 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 SMART SM01382 124 251 1.2E-82 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 SUPERFAMILY SSF50249 2 122 8.57E-45 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 45.394 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 Gene3D G3DSA:4.10.950.10 197 274 2.5E-33 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2292 f74b095c9fbd7eecc5c7565fa496e38f 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 274 3.0E-125 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Trebr_2513 564789968c15391fcab5f96abe7d2055 303 SUPERFAMILY SSF55166 201 295 9.42E-15 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Trebr_2513 564789968c15391fcab5f96abe7d2055 303 Gene3D G3DSA:3.30.1380.10 163 290 3.0E-14 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Trebr_2513 564789968c15391fcab5f96abe7d2055 303 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 214 291 1.2E-16 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 Trebr_2298 d11b96a125343d1e7bd5e8210fd31964 156 SUPERFAMILY SSF47973 9 149 1.29E-61 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Trebr_2298 d11b96a125343d1e7bd5e8210fd31964 156 PIRSF PIRSF002122 3 156 1.7E-62 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 Trebr_2298 d11b96a125343d1e7bd5e8210fd31964 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 9.1E-70 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Trebr_2298 d11b96a125343d1e7bd5e8210fd31964 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 34.329 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Trebr_2298 d11b96a125343d1e7bd5e8210fd31964 156 Gene3D G3DSA:1.10.455.10 2 156 5.5E-63 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Trebr_2298 d11b96a125343d1e7bd5e8210fd31964 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2298 d11b96a125343d1e7bd5e8210fd31964 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 3.3E-63 T 13-10-2018 IPR023798 Ribosomal protein S7 domain Trebr_2550 237592baa93224f7d956377ff5e333e4 449 SMART SM00710 359 382 8500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2550 237592baa93224f7d956377ff5e333e4 449 SMART SM00710 281 302 3900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2550 237592baa93224f7d956377ff5e333e4 449 SMART SM00710 193 219 3.2 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2550 237592baa93224f7d956377ff5e333e4 449 SMART SM00710 254 275 2.3 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2550 237592baa93224f7d956377ff5e333e4 449 SMART SM00710 220 241 47.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2550 237592baa93224f7d956377ff5e333e4 449 Gene3D G3DSA:2.160.20.10 2 412 1.2E-121 T 13-10-2018 IPR012334 Pectin lyase fold Trebr_2550 237592baa93224f7d956377ff5e333e4 449 SUPERFAMILY SSF51126 4 399 2.18E-89 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor Trebr_2550 237592baa93224f7d956377ff5e333e4 449 Pfam PF00295 Glycosyl hydrolases family 28 161 341 6.7E-36 T 13-10-2018 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Pfam PF13245 AAA domain 19 257 7.2E-36 T 13-10-2018 Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Gene3D G3DSA:3.40.50.300 579 675 1.1E-40 T 13-10-2018 Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Pfam PF13361 UvrD-like helicase C-terminal domain 277 428 6.9E-32 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Pfam PF13361 UvrD-like helicase C-terminal domain 548 655 5.9E-25 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Gene3D G3DSA:1.10.486.10 517 578 1.1E-40 T 13-10-2018 Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Gene3D G3DSA:1.10.10.160 115 189 8.8E-89 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 SUPERFAMILY SSF52540 10 680 1.73E-146 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Gene3D G3DSA:1.10.486.10 382 480 4.1E-52 T 13-10-2018 Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Gene3D G3DSA:3.40.50.300 15 272 8.8E-89 T 13-10-2018 Trebr_0525 9039ebc8299e0dd5a03a041fea53d885 765 Gene3D G3DSA:3.40.50.300 280 381 4.1E-52 T 13-10-2018 Trebr_0655 9ff64472566744edac537082c91664a7 364 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 2 362 42.659 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0655 9ff64472566744edac537082c91664a7 364 SUPERFAMILY SSF56042 166 349 6.98E-43 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Trebr_0655 9ff64472566744edac537082c91664a7 364 Pfam PF02769 AIR synthase related protein, C-terminal domain 172 328 7.8E-23 T 13-10-2018 IPR010918 PurM-like, C-terminal domain Trebr_0655 9ff64472566744edac537082c91664a7 364 SUPERFAMILY SSF55326 2 165 6.28E-44 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Trebr_0655 9ff64472566744edac537082c91664a7 364 Gene3D G3DSA:3.30.1330.10 2 165 4.3E-61 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Trebr_0655 9ff64472566744edac537082c91664a7 364 Gene3D G3DSA:3.90.650.10 166 356 5.6E-48 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Trebr_0655 9ff64472566744edac537082c91664a7 364 Pfam PF00586 AIR synthase related protein, N-terminal domain 69 158 1.4E-14 T 13-10-2018 IPR016188 PurM-like, N-terminal domain Trebr_0655 9ff64472566744edac537082c91664a7 364 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 2 325 1.4E-117 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Trebr_0574 c7047bec9763d41e51cba652ffa5e55e 286 Gene3D G3DSA:3.40.1390.30 117 255 7.2E-29 T 13-10-2018 Trebr_0574 c7047bec9763d41e51cba652ffa5e55e 286 Gene3D G3DSA:3.40.1390.30 45 266 7.2E-29 T 13-10-2018 Trebr_0574 c7047bec9763d41e51cba652ffa5e55e 286 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 50 268 2.5E-27 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Trebr_0574 c7047bec9763d41e51cba652ffa5e55e 286 SUPERFAMILY SSF102705 47 270 2.62E-32 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 Gene3D G3DSA:2.30.24.10 3 57 5.3E-21 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 Pfam PF03123 CAT RNA binding domain 4 57 1.3E-21 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 Gene3D G3DSA:1.10.1790.10 172 278 1.1E-27 T 13-10-2018 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 Gene3D G3DSA:1.10.1790.10 66 168 2.8E-28 T 13-10-2018 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 SUPERFAMILY SSF50151 4 56 2.22E-16 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 Pfam PF00874 PRD domain 77 164 2.5E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 Pfam PF00874 PRD domain 188 274 2.8E-11 T 13-10-2018 IPR011608 PRD domain GO:0006355 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 SUPERFAMILY SSF63520 60 166 1.83E-24 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 SMART SM01061 3 61 2.3E-24 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 Trebr_0240 cf46c582139696d65f29d89f125bcc96 280 SUPERFAMILY SSF63520 176 274 4.19E-18 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 Trebr_2486 5d9932cb1bd46059f8f77887498ec8eb 325 Gene3D G3DSA:1.10.3720.10 78 325 5.3E-60 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2486 5d9932cb1bd46059f8f77887498ec8eb 325 SUPERFAMILY SSF161098 80 310 5.63E-49 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2486 5d9932cb1bd46059f8f77887498ec8eb 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 318 8.8E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1146 70a10499e579675054e155d31696244c 657 SMART SM01245 25 76 7.5E-15 T 13-10-2018 IPR032782 Jag, N-terminal Trebr_1146 70a10499e579675054e155d31696244c 657 Gene3D G3DSA:3.30.30.80 18 75 8.2E-18 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily Trebr_1146 70a10499e579675054e155d31696244c 657 Pfam PF14804 Jag N-terminus 27 75 1.4E-13 T 13-10-2018 IPR032782 Jag, N-terminal Trebr_1146 70a10499e579675054e155d31696244c 657 Pfam PF03961 Flagellar Assembly Protein A 185 632 4.4E-121 T 13-10-2018 IPR005646 Flagellar assembly protein A Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 Gene3D G3DSA:3.20.19.10 488 676 6.5E-44 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 SUPERFAMILY SSF52016 473 674 1.49E-48 T 13-10-2018 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 Gene3D G3DSA:3.30.499.10 1 166 6.6E-41 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 PRINTS PR00415 Aconitase family signature 121 134 5.4E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 PRINTS PR00415 Aconitase family signature 360 373 5.4E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 PRINTS PR00415 Aconitase family signature 135 150 5.4E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 PRINTS PR00415 Aconitase family signature 211 224 5.4E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 PRINTS PR00415 Aconitase family signature 197 210 5.4E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 ProSitePatterns PS01244 Aconitase family signature 2. 360 373 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 SUPERFAMILY SSF53732 1 434 2.75E-140 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 Gene3D G3DSA:3.40.1060.10 167 278 1.1E-33 T 13-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 ProSitePatterns PS00450 Aconitase family signature 1. 300 316 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 TIGRFAM TIGR01342 acon_putative: putative aconitate hydratase 4 674 9.1E-252 T 13-10-2018 IPR006250 Aconitase, putative Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 Pfam PF00330 Aconitase family (aconitate hydratase) 7 418 3.2E-103 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 Gene3D G3DSA:3.30.499.10 281 442 2.5E-47 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Trebr_1160 bf9f0bf2722e9c5b535393f5c7c78683 678 Pfam PF00694 Aconitase C-terminal domain 542 609 1.2E-23 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 Gene3D G3DSA:3.40.50.2300 164 332 5.7E-62 T 13-10-2018 Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 SMART SM00354 1 75 2.6E-23 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 SUPERFAMILY SSF53822 78 335 2.08E-62 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 Gene3D G3DSA:3.40.50.2300 80 326 5.7E-62 T 13-10-2018 Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 Pfam PF13377 Periplasmic binding protein-like domain 173 334 2.1E-37 T 13-10-2018 Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 SUPERFAMILY SSF47413 1 60 3.31E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 49 3.5E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0193 139854a82cedbff80fcc3fcc54dbc0e5 338 Gene3D G3DSA:1.10.260.40 1 60 3.7E-19 T 13-10-2018 Trebr_0643 39c08987c3752aa0fa17ea865e600fdd 212 SUPERFAMILY SSF55154 2 201 5.23E-14 T 13-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 Trebr_0643 39c08987c3752aa0fa17ea865e600fdd 212 Gene3D G3DSA:2.40.320.10 1 207 1.9E-36 T 13-10-2018 Trebr_0643 39c08987c3752aa0fa17ea865e600fdd 212 Pfam PF01928 CYTH domain 1 197 4.6E-7 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 Trebr_2459 4d59a0d0fb851fd0cd3041942d043696 469 Pfam PF04326 Putative DNA-binding domain 3 108 1.3E-16 T 13-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 Trebr_2459 4d59a0d0fb851fd0cd3041942d043696 469 SUPERFAMILY SSF46785 402 457 8.49E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2459 4d59a0d0fb851fd0cd3041942d043696 469 Gene3D G3DSA:3.30.565.60 212 361 3.6E-29 T 13-10-2018 IPR038475 RecG, C-terminal domain superfamily Trebr_2459 4d59a0d0fb851fd0cd3041942d043696 469 Gene3D G3DSA:3.30.950.30 1 111 4.4E-19 T 13-10-2018 IPR038461 Schlafen, AAA domain superfamily Trebr_2459 4d59a0d0fb851fd0cd3041942d043696 469 Pfam PF13749 Putative ATP-dependent DNA helicase recG C-terminal 276 358 7.5E-15 T 13-10-2018 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 403 3.4E-185 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 SMART SM00382 107 260 4.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 SMART SM00994 7 47 2.3E-14 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 Gene3D G3DSA:1.10.8.60 310 414 6.2E-35 T 13-10-2018 Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 SMART SM01086 311 405 8.4E-28 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 Pfam PF07724 AAA domain (Cdc48 subfamily) 107 304 5.7E-49 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 Pfam PF06689 ClpX C4-type zinc finger 9 46 1.8E-15 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 SUPERFAMILY SSF57716 9 44 1.31E-6 T 13-10-2018 Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 Gene3D G3DSA:3.30.50.30 2 47 1.1E-13 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 409 49.434 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 311 383 7.8E-15 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 Gene3D G3DSA:3.40.50.300 53 309 2.2E-106 T 13-10-2018 Trebr_1578 bcb04b449824d93360d97f91f2201d3c 415 SUPERFAMILY SSF52540 58 396 4.47E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1689 4307d011dc016578d0ff3b09cdaf49a8 259 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 36 239 5.9E-41 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_1689 4307d011dc016578d0ff3b09cdaf49a8 259 Gene3D G3DSA:3.40.50.720 2 238 9.7E-72 T 13-10-2018 Trebr_1689 4307d011dc016578d0ff3b09cdaf49a8 259 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 115 1.0E-13 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_1689 4307d011dc016578d0ff3b09cdaf49a8 259 SUPERFAMILY SSF51735 1 238 1.63E-18 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1689 4307d011dc016578d0ff3b09cdaf49a8 259 PIRSF PIRSF000161 1 259 1.3E-57 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_1689 4307d011dc016578d0ff3b09cdaf49a8 259 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 118 258 1.8E-33 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_1689 4307d011dc016578d0ff3b09cdaf49a8 259 Gene3D G3DSA:3.30.360.10 116 222 9.7E-72 T 13-10-2018 Trebr_1689 4307d011dc016578d0ff3b09cdaf49a8 259 SUPERFAMILY SSF55347 117 224 1.57E-24 T 13-10-2018 Trebr_2173 f4dd449855ceb576303427d367c89605 95 PIRSF PIRSF032582 1 95 2.1E-39 T 13-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Trebr_2173 f4dd449855ceb576303427d367c89605 95 Gene3D G3DSA:3.30.70.240 1 95 1.6E-36 T 13-10-2018 Trebr_2173 f4dd449855ceb576303427d367c89605 95 Pfam PF09827 CRISPR associated protein Cas2 1 78 5.7E-26 T 13-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Trebr_2173 f4dd449855ceb576303427d367c89605 95 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 93 15.938 T 13-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Trebr_2173 f4dd449855ceb576303427d367c89605 95 SUPERFAMILY SSF143430 1 88 2.35E-28 T 13-10-2018 Trebr_2173 f4dd449855ceb576303427d367c89605 95 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 1 95 6.2E-22 T 13-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Trebr_1437 66ecf780094c088129d1e0595838eac9 713 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 519 709 8.9E-33 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1437 66ecf780094c088129d1e0595838eac9 713 Gene3D G3DSA:3.60.40.10 492 712 5.7E-40 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1437 66ecf780094c088129d1e0595838eac9 713 SMART SM00331 492 710 4.3E-32 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1875 dbd9107e5747ba275a5ce75f015db990 285 Pfam PF00535 Glycosyl transferase family 2 11 136 7.0E-10 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_1875 dbd9107e5747ba275a5ce75f015db990 285 Gene3D G3DSA:3.90.550.10 5 235 1.9E-13 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1875 dbd9107e5747ba275a5ce75f015db990 285 SUPERFAMILY SSF53448 4 136 5.98E-16 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0793 5ee8f8507301276932452fbf494e540c 88 Pfam PF00166 Chaperonin 10 Kd subunit 2 87 1.5E-28 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Trebr_0793 5ee8f8507301276932452fbf494e540c 88 PRINTS PR00297 10kDa chaperonin signature 3 18 5.1E-24 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Trebr_0793 5ee8f8507301276932452fbf494e540c 88 PRINTS PR00297 10kDa chaperonin signature 25 46 5.1E-24 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Trebr_0793 5ee8f8507301276932452fbf494e540c 88 PRINTS PR00297 10kDa chaperonin signature 53 65 5.1E-24 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Trebr_0793 5ee8f8507301276932452fbf494e540c 88 PRINTS PR00297 10kDa chaperonin signature 74 87 5.1E-24 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Trebr_0793 5ee8f8507301276932452fbf494e540c 88 Hamap MF_00580 10 kDa chaperonin [groS]. 2 88 21.616 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Trebr_0793 5ee8f8507301276932452fbf494e540c 88 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 Trebr_0793 5ee8f8507301276932452fbf494e540c 88 SMART SM00883 2 87 6.5E-38 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Trebr_0793 5ee8f8507301276932452fbf494e540c 88 SUPERFAMILY SSF50129 1 88 4.62E-28 T 13-10-2018 IPR011032 GroES-like superfamily Trebr_0793 5ee8f8507301276932452fbf494e540c 88 Gene3D G3DSA:2.30.33.40 1 88 4.4E-30 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 PRINTS PR00046 Major sigma-70 factor signature 235 250 1.3E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 PRINTS PR00046 Major sigma-70 factor signature 90 98 1.3E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 PRINTS PR00046 Major sigma-70 factor signature 213 225 1.3E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 PRINTS PR00046 Major sigma-70 factor signature 250 261 1.3E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 PRINTS PR00046 Major sigma-70 factor signature 66 79 1.3E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 Pfam PF04545 Sigma-70, region 4 211 262 2.9E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 SUPERFAMILY SSF88659 115 188 6.54E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 Gene3D G3DSA:1.10.601.10 3 110 3.3E-34 T 13-10-2018 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 Pfam PF04542 Sigma-70 region 2 42 107 3.0E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 235 261 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 Gene3D G3DSA:1.10.10.10 115 190 7.5E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 Pfam PF04539 Sigma-70 region 3 121 195 1.1E-9 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 SUPERFAMILY SSF88659 174 265 1.76E-19 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 Pfam PF00140 Sigma-70 factor, region 1.2 8 35 2.2E-7 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 Gene3D G3DSA:1.10.10.10 191 268 4.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 66 79 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 SUPERFAMILY SSF88946 6 108 6.15E-34 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1278 ffe88ee23628e0ce606a114d81801f28 269 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 41 264 7.2E-33 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 Gene3D G3DSA:3.90.190.20 341 487 7.3E-38 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 Gene3D G3DSA:3.40.1390.10 17 93 3.3E-17 T 13-10-2018 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 SUPERFAMILY SSF53623 134 336 7.2E-44 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 47 483 1.4E-109 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 SUPERFAMILY SSF63418 38 129 1.96E-19 T 13-10-2018 IPR035911 MurE/MurF, N-terminal Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 SUPERFAMILY SSF53244 341 483 2.52E-27 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 Pfam PF08245 Mur ligase middle domain 138 317 1.5E-35 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 Pfam PF02875 Mur ligase family, glutamate ligase domain 340 415 7.7E-12 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 Pfam PF01225 Mur ligase family, catalytic domain 41 126 1.8E-9 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 17 484 28.988 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_0949 fc41c75af2abb602823e6bf3d37926f3 488 Gene3D G3DSA:3.40.1190.10 113 335 4.2E-54 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_0751 6ff264b04e7bf0d550b5afeb718ffa5d 253 SUPERFAMILY SSF51366 1 253 1.41E-68 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Trebr_0751 6ff264b04e7bf0d550b5afeb718ffa5d 253 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 253 42.587 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Trebr_0751 6ff264b04e7bf0d550b5afeb718ffa5d 253 Gene3D G3DSA:3.20.20.70 1 253 4.7E-94 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0751 6ff264b04e7bf0d550b5afeb718ffa5d 253 Pfam PF00977 Histidine biosynthesis protein 5 237 1.0E-75 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Trebr_0751 6ff264b04e7bf0d550b5afeb718ffa5d 253 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 253 1.2E-96 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 SUPERFAMILY SSF89000 388 436 2.59E-10 T 13-10-2018 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 36 52 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 Gene3D G3DSA:3.30.160.270 376 559 1.3E-46 T 13-10-2018 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 4 559 2.5E-216 T 13-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 Pfam PF08502 LeuA allosteric (dimerisation) domain 421 559 8.9E-22 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 239 252 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 SUPERFAMILY SSF110921 459 559 1.83E-26 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 Gene3D G3DSA:3.20.20.70 7 375 2.2E-148 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 SUPERFAMILY SSF51569 18 326 2.75E-96 T 13-10-2018 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 Pfam PF00682 HMGL-like 30 307 3.9E-75 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 4 560 48.907 T 13-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_1476 8f1f3be28a7116bcd1bd15d9975dab6f 560 SMART SM00917 421 560 4.2E-23 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_1047 420dfd7dade192217e9b06457729d8f2 437 Pfam PF13173 AAA domain 18 152 1.2E-30 T 13-10-2018 Trebr_1047 420dfd7dade192217e9b06457729d8f2 437 Gene3D G3DSA:3.40.50.300 3 69 6.4E-5 T 13-10-2018 Trebr_1047 420dfd7dade192217e9b06457729d8f2 437 SUPERFAMILY SSF52540 5 215 4.21E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1047 420dfd7dade192217e9b06457729d8f2 437 Pfam PF13635 Domain of unknown function (DUF4143) 220 383 1.2E-25 T 13-10-2018 IPR025420 Domain of unknown function DUF4143 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 PRINTS PR00143 Citrate synthase signature 265 293 3.5E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 PRINTS PR00143 Citrate synthase signature 415 429 3.5E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 PRINTS PR00143 Citrate synthase signature 242 257 3.5E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 PRINTS PR00143 Citrate synthase signature 186 199 3.5E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 PRINTS PR00143 Citrate synthase signature 395 411 3.5E-28 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 Gene3D G3DSA:1.10.580.10 80 434 7.9E-108 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 Pfam PF00285 Citrate synthase, C-terminal domain 54 446 3.2E-116 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 SUPERFAMILY SSF48256 66 453 9.81E-100 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 Gene3D G3DSA:1.10.230.10 291 409 7.9E-108 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Trebr_0113 13e0d30b15129a3081773e2aad7437b2 462 PIRSF PIRSF001369 58 462 7.3E-85 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type Trebr_1224 8ac55d509264704d723d97b739a751c4 405 Gene3D G3DSA:3.40.50.1980 15 146 2.6E-22 T 13-10-2018 Trebr_1224 8ac55d509264704d723d97b739a751c4 405 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 28 253 3.0E-29 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Trebr_1224 8ac55d509264704d723d97b739a751c4 405 SUPERFAMILY SSF53807 7 326 4.91E-42 T 13-10-2018 Trebr_1224 8ac55d509264704d723d97b739a751c4 405 Gene3D G3DSA:3.40.50.1980 147 253 1.0E-22 T 13-10-2018 Trebr_2462 0214b63124cd2f16c3c7778190cca1ba 209 Gene3D G3DSA:3.40.50.1390 1 152 1.6E-31 T 13-10-2018 Trebr_2462 0214b63124cd2f16c3c7778190cca1ba 209 Pfam PF00239 Resolvase, N terminal domain 3 143 1.5E-32 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Trebr_2462 0214b63124cd2f16c3c7778190cca1ba 209 SUPERFAMILY SSF53041 1 143 1.27E-31 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Trebr_2462 0214b63124cd2f16c3c7778190cca1ba 209 ProSitePatterns PS00397 Site-specific recombinases active site. 5 13 - T 13-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Trebr_2462 0214b63124cd2f16c3c7778190cca1ba 209 SMART SM00857 2 144 1.9E-36 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Trebr_0803 bd78e6e05e427c2b5676f19547e2b518 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 224 2.7E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_0803 bd78e6e05e427c2b5676f19547e2b518 233 SMART SM00862 153 224 7.4E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_0803 bd78e6e05e427c2b5676f19547e2b518 233 Gene3D G3DSA:1.10.10.10 137 231 9.3E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0803 bd78e6e05e427c2b5676f19547e2b518 233 SUPERFAMILY SSF52172 3 122 3.13E-36 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0803 bd78e6e05e427c2b5676f19547e2b518 233 Gene3D G3DSA:3.40.50.2300 2 125 6.6E-32 T 13-10-2018 Trebr_0803 bd78e6e05e427c2b5676f19547e2b518 233 SMART SM00448 2 112 5.2E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0803 bd78e6e05e427c2b5676f19547e2b518 233 Pfam PF00072 Response regulator receiver domain 4 112 2.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0803 bd78e6e05e427c2b5676f19547e2b518 233 SUPERFAMILY SSF46894 139 224 3.4E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_0675 8c2828a1fdc9b30c4f55606543daa969 501 SUPERFAMILY SSF51395 94 490 3.6E-119 T 13-10-2018 Trebr_0675 8c2828a1fdc9b30c4f55606543daa969 501 PIRSF PIRSF006429 3 501 2.6E-150 T 13-10-2018 IPR024188 Glutamate synthase large subunit-like protein Trebr_0675 8c2828a1fdc9b30c4f55606543daa969 501 Gene3D G3DSA:3.20.20.70 149 493 7.5E-128 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0675 8c2828a1fdc9b30c4f55606543daa969 501 PIRSF PIRSF500061 3 501 2.2E-190 T 13-10-2018 Trebr_0675 8c2828a1fdc9b30c4f55606543daa969 501 Gene3D G3DSA:3.30.70.20 7 88 7.7E-8 T 13-10-2018 Trebr_0675 8c2828a1fdc9b30c4f55606543daa969 501 Pfam PF01645 Conserved region in glutamate synthase 110 469 4.3E-137 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Trebr_0675 8c2828a1fdc9b30c4f55606543daa969 501 SUPERFAMILY SSF54862 8 141 2.18E-14 T 13-10-2018 Trebr_0675 8c2828a1fdc9b30c4f55606543daa969 501 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 50 61 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0982 9ae5d316bbfc9af3c7387665fd1f634d 319 SUPERFAMILY SSF52540 108 269 4.05E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0982 9ae5d316bbfc9af3c7387665fd1f634d 319 Gene3D G3DSA:3.40.50.300 106 312 5.9E-72 T 13-10-2018 Trebr_0982 9ae5d316bbfc9af3c7387665fd1f634d 319 Pfam PF02562 PhoH-like protein 109 312 4.5E-84 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 Gene3D G3DSA:3.20.70.20 172 838 7.9E-196 T 13-10-2018 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 Pfam PF02867 Ribonucleotide reductase, barrel domain 316 751 2.4E-126 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 Pfam PF03477 ATP cone domain 1 89 1.9E-16 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 702 724 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 Pfam PF02867 Ribonucleotide reductase, barrel domain 756 828 1.8E-18 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 SUPERFAMILY SSF48168 112 314 3.27E-54 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 237 311 4.5E-19 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 PRINTS PR01183 Ribonucleotide reductase large chain signature 713 740 2.0E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 PRINTS PR01183 Ribonucleotide reductase large chain signature 586 609 2.0E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 PRINTS PR01183 Ribonucleotide reductase large chain signature 529 540 2.0E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 PRINTS PR01183 Ribonucleotide reductase large chain signature 391 410 2.0E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 PRINTS PR01183 Ribonucleotide reductase large chain signature 624 646 2.0E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 PRINTS PR01183 Ribonucleotide reductase large chain signature 652 675 2.0E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 240 832 1.7E-185 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0370 e88ac0e297eeadd84bae745947ecfa53 844 SUPERFAMILY SSF51998 315 842 1.62E-166 T 13-10-2018 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 Hamap MF_01916 Cardiolipin synthase. 5 507 37.416 T 13-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 SUPERFAMILY SSF56024 98 336 1.48E-40 T 13-10-2018 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 Gene3D G3DSA:3.30.870.10 339 482 7.4E-30 T 13-10-2018 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 SMART SM00155 420 447 2.2E-5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 SMART SM00155 215 242 0.002 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 Gene3D G3DSA:3.30.870.10 113 298 4.4E-40 T 13-10-2018 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 Pfam PF13396 Phospholipase_D-nuclease N-terminal 11 52 7.3E-9 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 1 507 3.6E-122 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 SUPERFAMILY SSF56024 269 480 3.14E-42 T 13-10-2018 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 Pfam PF13091 PLD-like domain 134 247 2.1E-10 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Trebr_0785 acc30a6a1d6f1df25e1b8079c4f3c499 507 Pfam PF13091 PLD-like domain 348 472 1.3E-25 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 PIRSF PIRSF000876 3 397 8.5E-132 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 Gene3D G3DSA:3.40.50.180 201 395 6.3E-69 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 Pfam PF01339 CheB methylesterase 210 389 3.4E-60 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 SUPERFAMILY SSF52738 205 393 8.5E-66 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 Gene3D G3DSA:3.40.50.2300 3 143 1.4E-30 T 13-10-2018 Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 SMART SM00448 6 123 3.7E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 Pfam PF00072 Response regulator receiver domain 8 112 7.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 SUPERFAMILY SSF52172 7 114 2.28E-29 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0720 afd50bfadea6b28cbc0768372983e072 397 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 6 394 37.159 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 SUPERFAMILY SSF55073 330 481 3.53E-16 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 Gene3D G3DSA:3.30.70.270 318 486 3.4E-15 T 13-10-2018 Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 SMART SM00267 313 482 4.9E-5 T 13-10-2018 IPR000160 GGDEF domain Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 Gene3D G3DSA:3.20.20.450 497 749 7.2E-84 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 Pfam PF00990 Diguanylate cyclase, GGDEF domain 326 476 3.4E-13 T 13-10-2018 IPR000160 GGDEF domain Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 Pfam PF00563 EAL domain 501 737 1.1E-68 T 13-10-2018 IPR001633 EAL domain Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 SUPERFAMILY SSF141868 500 750 4.05E-77 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 Gene3D G3DSA:3.30.450.20 145 290 7.2E-10 T 13-10-2018 Trebr_2203 76285b8c6ef4ccf3fc63842402698e3d 765 SMART SM00052 495 742 3.6E-89 T 13-10-2018 IPR001633 EAL domain Trebr_1534 d1a82d2ca0ff8cd890369009ddd2fe8b 114 SUPERFAMILY SSF49879 40 111 1.91E-26 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 Trebr_1534 d1a82d2ca0ff8cd890369009ddd2fe8b 114 SMART SM00240 40 90 8.4E-15 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Trebr_1534 d1a82d2ca0ff8cd890369009ddd2fe8b 114 Pfam PF00498 FHA domain 41 107 7.0E-22 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Trebr_1534 d1a82d2ca0ff8cd890369009ddd2fe8b 114 Gene3D G3DSA:2.60.200.20 2 113 2.1E-25 T 13-10-2018 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 SMART SM00845 297 444 1.8E-45 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 Gene3D G3DSA:3.40.50.1170 442 605 2.1E-26 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 SUPERFAMILY SSF55931 33 246 2.03E-26 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 Gene3D G3DSA:3.40.50.40 651 774 1.9E-10 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 Pfam PF00710 Asparaginase, N-terminal 449 597 8.9E-25 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 Pfam PF02637 GatB domain 297 444 1.7E-34 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 SMART SM00870 448 765 7.4E-9 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 SUPERFAMILY SSF53774 449 771 7.59E-31 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 Gene3D G3DSA:1.10.150.380 266 383 4.1E-26 T 13-10-2018 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 SUPERFAMILY SSF89095 266 372 3.53E-21 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 PRINTS PR00139 Asparaginase/glutaminase family signature 209 220 1.7E-5 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 PRINTS PR00139 Asparaginase/glutaminase family signature 524 542 1.7E-5 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 Gene3D G3DSA:1.10.10.410 384 441 5.4E-13 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Trebr_0309 fbac3dbb3062ad6d8c66367fc2ef7cc9 777 Pfam PF02934 GatB/GatE catalytic domain 34 244 2.0E-23 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 Pfam PF08275 DNA primase catalytic core, N-terminal domain 134 251 2.0E-33 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 Gene3D G3DSA:3.40.1360.10 241 365 8.6E-38 T 13-10-2018 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 Hamap MF_00974 DNA primase [dnaG]. 4 582 25.36 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 SUPERFAMILY SSF56731 118 421 5.49E-89 T 13-10-2018 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 SUPERFAMILY SSF57783 4 97 1.09E-32 T 13-10-2018 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 Pfam PF01807 CHC2 zinc finger 6 99 4.1E-36 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 Gene3D G3DSA:3.90.980.10 111 239 1.7E-35 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 TIGRFAM TIGR01391 dnaG: DNA primase 5 414 2.4E-133 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 Gene3D G3DSA:3.90.580.10 1 100 2.8E-36 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 SMART SM00493 259 330 2.1E-17 T 13-10-2018 IPR006171 TOPRIM domain Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 Pfam PF13155 Toprim-like 263 345 5.0E-15 T 13-10-2018 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 PIRSF PIRSF002811 2 592 5.6E-159 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Trebr_1363 25c74965c74074bcf26417e2ecad2265 594 SMART SM00400 36 90 1.1E-29 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Trebr_0453 a2b04363553184cdf566fa5662419c02 284 Pfam PF02811 PHP domain 3 81 8.8E-8 T 13-10-2018 IPR004013 PHP domain GO:0003824 Trebr_0453 a2b04363553184cdf566fa5662419c02 284 Gene3D G3DSA:3.20.20.140 2 247 3.8E-81 T 13-10-2018 Trebr_0453 a2b04363553184cdf566fa5662419c02 284 SUPERFAMILY SSF89550 1 250 7.19E-46 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Trebr_0453 a2b04363553184cdf566fa5662419c02 284 Gene3D G3DSA:1.10.150.650 95 166 3.8E-81 T 13-10-2018 Trebr_0453 a2b04363553184cdf566fa5662419c02 284 SMART SM00481 2 67 1.4E-20 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Trebr_1876 bb3f103769e94ea66897ddd73e531fbd 396 SUPERFAMILY SSF53756 16 395 3.93E-49 T 13-10-2018 Trebr_1876 bb3f103769e94ea66897ddd73e531fbd 396 Gene3D G3DSA:3.40.50.2000 82 190 6.1E-37 T 13-10-2018 Trebr_1876 bb3f103769e94ea66897ddd73e531fbd 396 Gene3D G3DSA:3.40.50.2000 191 383 6.1E-37 T 13-10-2018 Trebr_1876 bb3f103769e94ea66897ddd73e531fbd 396 Pfam PF00534 Glycosyl transferases group 1 204 375 1.2E-21 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_0656 c31534ec1708f6061e5288d92cb1c45f 361 Gene3D G3DSA:3.40.50.170 168 361 7.7E-54 T 13-10-2018 Trebr_0656 c31534ec1708f6061e5288d92cb1c45f 361 Gene3D G3DSA:3.40.50.170 116 166 2.9E-5 T 13-10-2018 Trebr_0656 c31534ec1708f6061e5288d92cb1c45f 361 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 128 360 28.765 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Trebr_0656 c31534ec1708f6061e5288d92cb1c45f 361 SUPERFAMILY SSF53328 182 359 1.28E-43 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Trebr_0656 c31534ec1708f6061e5288d92cb1c45f 361 Pfam PF00551 Formyl transferase 185 352 2.3E-39 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 PIRSF PIRSF000729 4 265 1.6E-87 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 Hamap MF_00456 Glutamate 5-kinase [proB]. 9 265 34.745 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 PRINTS PR00474 Glutamate 5-kinase family signature 119 140 8.5E-54 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 PRINTS PR00474 Glutamate 5-kinase family signature 79 107 8.5E-54 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 PRINTS PR00474 Glutamate 5-kinase family signature 217 237 8.5E-54 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 PRINTS PR00474 Glutamate 5-kinase family signature 156 183 8.5E-54 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 PRINTS PR00474 Glutamate 5-kinase family signature 46 60 8.5E-54 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 ProSitePatterns PS00902 Glutamate 5-kinase signature. 215 232 - T 13-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 SUPERFAMILY SSF53633 10 264 2.88E-65 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 Gene3D G3DSA:3.40.1160.10 3 265 4.0E-82 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 TIGRFAM TIGR01027 proB: glutamate 5-kinase 9 264 9.8E-89 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Trebr_0462 7fa09698ba04f5b916ab2c178a54ab9c 265 Pfam PF00696 Amino acid kinase family 10 243 3.6E-41 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Trebr_2024 221cea80406773e24ea978c804581866 823 Gene3D G3DSA:2.60.420.10 327 808 0.0 T 13-10-2018 Trebr_2024 221cea80406773e24ea978c804581866 823 Gene3D G3DSA:1.20.890.20 267 326 0.0 T 13-10-2018 Trebr_2024 221cea80406773e24ea978c804581866 823 Pfam PF06165 Glycosyltransferase family 36 21 263 5.5E-82 T 13-10-2018 IPR010383 Glycosyl hydrolase 94 Trebr_2024 221cea80406773e24ea978c804581866 823 SMART SM01068 1 63 1.5E-18 T 13-10-2018 IPR009342 Putative carbohydrate binding domain Trebr_2024 221cea80406773e24ea978c804581866 823 Gene3D G3DSA:1.50.10.10 334 749 0.0 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_2024 221cea80406773e24ea978c804581866 823 SUPERFAMILY SSF48208 300 788 5.51E-92 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_2024 221cea80406773e24ea978c804581866 823 Gene3D G3DSA:2.70.98.40 2 714 0.0 T 13-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Trebr_2024 221cea80406773e24ea978c804581866 823 SUPERFAMILY SSF74650 1 264 5.65E-78 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_2024 221cea80406773e24ea978c804581866 823 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 319 748 1.6E-159 T 13-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain Trebr_2024 221cea80406773e24ea978c804581866 823 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 633 639 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_1968 530892a59bb364834457d40e9391ed03 337 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 307 15.556 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1968 530892a59bb364834457d40e9391ed03 337 Gene3D G3DSA:3.30.2350.10 1 230 3.9E-76 T 13-10-2018 Trebr_1968 530892a59bb364834457d40e9391ed03 337 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 2 207 4.0E-68 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1968 530892a59bb364834457d40e9391ed03 337 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 170 210 4.3E-8 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 Trebr_1968 530892a59bb364834457d40e9391ed03 337 SUPERFAMILY SSF55120 2 211 2.39E-62 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1968 530892a59bb364834457d40e9391ed03 337 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 23 169 1.2E-45 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 Trebr_2169 3020ffd08c8b150fd626ead097a432b2 345 SMART SM00382 49 233 4.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2169 3020ffd08c8b150fd626ead097a432b2 345 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_2169 3020ffd08c8b150fd626ead097a432b2 345 Pfam PF00005 ABC transporter 41 184 2.8E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2169 3020ffd08c8b150fd626ead097a432b2 345 SUPERFAMILY SSF52540 32 253 1.55E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2169 3020ffd08c8b150fd626ead097a432b2 345 Gene3D G3DSA:3.40.50.300 3 297 9.3E-57 T 13-10-2018 Trebr_0942 d86bd6d1f3257cc089fb47e4d4c59dbc 332 Pfam PF01116 Fructose-bisphosphate aldolase class-II 10 330 1.1E-96 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Trebr_0942 d86bd6d1f3257cc089fb47e4d4c59dbc 332 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 9 332 2.8E-116 T 13-10-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 Trebr_0942 d86bd6d1f3257cc089fb47e4d4c59dbc 332 PIRSF PIRSF001359 7 332 9.7E-86 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Trebr_0942 d86bd6d1f3257cc089fb47e4d4c59dbc 332 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 9 330 5.5E-80 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Trebr_0942 d86bd6d1f3257cc089fb47e4d4c59dbc 332 SUPERFAMILY SSF51569 9 330 2.93E-93 T 13-10-2018 Trebr_0942 d86bd6d1f3257cc089fb47e4d4c59dbc 332 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 84 95 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Trebr_0942 d86bd6d1f3257cc089fb47e4d4c59dbc 332 Gene3D G3DSA:3.20.20.70 1 332 5.2E-121 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1723 ffde37f1aabaaca2251f48d6f1ab9c6b 216 Pfam PF04079 Segregation and condensation complex subunit ScpB 46 204 9.6E-55 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Trebr_1723 ffde37f1aabaaca2251f48d6f1ab9c6b 216 Gene3D G3DSA:1.10.10.10 121 213 5.7E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1723 ffde37f1aabaaca2251f48d6f1ab9c6b 216 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 45 212 1.7E-39 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Trebr_1723 ffde37f1aabaaca2251f48d6f1ab9c6b 216 SUPERFAMILY SSF46785 40 114 3.22E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1723 ffde37f1aabaaca2251f48d6f1ab9c6b 216 PIRSF PIRSF019345 31 213 8.6E-53 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Trebr_1723 ffde37f1aabaaca2251f48d6f1ab9c6b 216 SUPERFAMILY SSF46785 122 195 2.21E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1723 ffde37f1aabaaca2251f48d6f1ab9c6b 216 Gene3D G3DSA:1.10.10.10 34 120 4.1E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 ProSitePatterns PS00321 recA signature. 226 234 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 Hamap MF_00268 Protein RecA [recA]. 17 344 50.283 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 SUPERFAMILY SSF52540 15 282 2.98E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 16 339 3.4E-161 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 SMART SM00382 70 241 4.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 Gene3D G3DSA:3.30.250.10 283 360 1.1E-20 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 PRINTS PR00142 RecA protein signature 106 135 1.1E-78 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 PRINTS PR00142 RecA protein signature 140 169 1.1E-78 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 PRINTS PR00142 RecA protein signature 258 287 1.1E-78 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 PRINTS PR00142 RecA protein signature 178 207 1.1E-78 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 PRINTS PR00142 RecA protein signature 223 251 1.1E-78 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 PRINTS PR00142 RecA protein signature 312 329 1.1E-78 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 Pfam PF00154 recA bacterial DNA recombination protein 19 283 3.8E-138 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 Gene3D G3DSA:3.40.50.300 44 282 2.3E-79 T 13-10-2018 Trebr_1726 0b2ca33c6cd2640f85d211fc548af984 397 SUPERFAMILY SSF54752 285 340 2.49E-16 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Trebr_1111 00a0d871d330a0f13db922732f1ef945 412 SUPERFAMILY SSF53271 88 230 8.05E-29 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like Trebr_1111 00a0d871d330a0f13db922732f1ef945 412 SMART SM01400 9 191 2.2E-10 T 13-10-2018 Trebr_1111 00a0d871d330a0f13db922732f1ef945 412 Gene3D G3DSA:3.40.50.2020 81 233 9.2E-43 T 13-10-2018 Trebr_1111 00a0d871d330a0f13db922732f1ef945 412 Gene3D G3DSA:3.40.50.2020 234 371 1.8E-29 T 13-10-2018 Trebr_1111 00a0d871d330a0f13db922732f1ef945 412 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 85 191 6.8E-26 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Trebr_1111 00a0d871d330a0f13db922732f1ef945 412 Pfam PF00156 Phosphoribosyl transferase domain 212 361 1.2E-23 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Trebr_1111 00a0d871d330a0f13db922732f1ef945 412 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 83 400 4.4E-102 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Trebr_1111 00a0d871d330a0f13db922732f1ef945 412 SUPERFAMILY SSF53271 237 399 1.17E-32 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like Trebr_1423 c27e8dca039c9fa6e46c16f85f4495aa 234 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 10 232 2.4E-80 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Trebr_1423 c27e8dca039c9fa6e46c16f85f4495aa 234 SUPERFAMILY SSF64005 7 227 7.85E-80 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Trebr_1423 c27e8dca039c9fa6e46c16f85f4495aa 234 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 10 233 38.748 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Trebr_1423 c27e8dca039c9fa6e46c16f85f4495aa 234 Gene3D G3DSA:3.40.1180.10 2 234 9.3E-88 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Trebr_1423 c27e8dca039c9fa6e46c16f85f4495aa 234 Pfam PF01255 Putative undecaprenyl diphosphate synthase 17 232 8.0E-74 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Trebr_1423 c27e8dca039c9fa6e46c16f85f4495aa 234 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 178 195 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 Gene3D G3DSA:3.40.50.20 1 125 2.5E-35 T 13-10-2018 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 PIRSF PIRSF039102 1 367 9.2E-123 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 Gene3D G3DSA:3.30.470.20 126 361 2.6E-76 T 13-10-2018 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 300 329 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 Gene3D G3DSA:3.30.1490.20 151 227 2.6E-76 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 103 114 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 2 356 2.4E-105 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 SUPERFAMILY SSF56059 136 360 6.51E-55 T 13-10-2018 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 Pfam PF01820 D-ala D-ala ligase N-terminus 2 126 5.7E-32 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 1 359 40.742 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 SUPERFAMILY SSF52440 2 135 1.53E-33 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Trebr_1881 dc7bdb8349110e1c61f3f0a2d789801e 373 Pfam PF07478 D-ala D-ala ligase C-terminus 144 356 1.6E-69 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 195 211 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 233 254 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 284 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 6.9E-60 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.8E-33 T 13-10-2018 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 2.8E-33 T 13-10-2018 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 2.8E-33 T 13-10-2018 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 2.8E-33 T 13-10-2018 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.8E-33 T 13-10-2018 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 Gene3D G3DSA:3.50.50.60 9 302 3.0E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 292 9.8E-47 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 SUPERFAMILY SSF51905 1 301 8.46E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 Gene3D G3DSA:3.50.50.60 117 239 3.0E-105 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2206 8afbe2617d88f5f2d5b77522c011274d 312 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 6 303 4.9E-108 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Pfam PF00679 Elongation factor G C-terminus 403 488 1.0E-21 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Gene3D G3DSA:3.30.70.870 289 370 6.0E-34 T 13-10-2018 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 SUPERFAMILY SSF54980 403 497 1.2E-24 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Hamap MF_00071 Elongation factor 4 [lepA]. 1 601 275.533 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 PRINTS PR00315 GTP-binding elongation factor signature 52 60 2.5E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 PRINTS PR00315 GTP-binding elongation factor signature 129 138 2.5E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 PRINTS PR00315 GTP-binding elongation factor signature 77 87 2.5E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 PRINTS PR00315 GTP-binding elongation factor signature 9 22 2.5E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 PRINTS PR00315 GTP-binding elongation factor signature 93 104 2.5E-13 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 SUPERFAMILY SSF52540 1 202 6.0E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Pfam PF00009 Elongation factor Tu GTP binding domain 7 184 6.9E-52 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Gene3D G3DSA:2.40.30.10 189 288 8.8E-35 T 13-10-2018 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 179 2.6E-21 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 SUPERFAMILY SSF50447 168 291 1.14E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Gene3D G3DSA:3.30.70.3380 371 481 1.9E-41 T 13-10-2018 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Gene3D G3DSA:3.30.70.2570 483 557 1.6E-29 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Gene3D G3DSA:3.40.50.300 3 188 6.9E-68 T 13-10-2018 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Pfam PF06421 GTP-binding protein LepA C-terminus 491 597 2.0E-45 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 SUPERFAMILY SSF54980 295 373 2.01E-19 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 TIGRFAM TIGR01393 lepA: elongation factor 4 6 598 8.3E-298 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 Trebr_1765 aa10d5a3cf82d4d72e9f8ef2ed35cdce 601 Pfam PF03144 Elongation factor Tu domain 2 208 278 3.0E-9 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 Pfam PF02272 DHHA1 domain 458 578 2.6E-16 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 SUPERFAMILY SSF64182 360 581 1.92E-44 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 Pfam PF01368 DHH family 77 208 4.2E-12 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 Gene3D G3DSA:2.40.50.460 581 709 3.2E-15 T 13-10-2018 Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 23 704 9.7E-165 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 Gene3D G3DSA:3.90.1640.30 53 244 4.8E-50 T 13-10-2018 Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 Gene3D G3DSA:3.90.1640.30 322 460 2.3E-24 T 13-10-2018 Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 Gene3D G3DSA:3.10.310.30 464 580 2.2E-23 T 13-10-2018 Trebr_1088 84a474090698bfdf8db6b3b142e0a371 709 SUPERFAMILY SSF64182 52 208 3.92E-47 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily Trebr_1127 44ddeb7d5bac0e7d6c8c0e5f97a17780 398 Gene3D G3DSA:1.10.150.130 85 167 1.1E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal Trebr_1127 44ddeb7d5bac0e7d6c8c0e5f97a17780 398 Gene3D G3DSA:1.10.443.10 174 387 6.6E-58 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Trebr_1127 44ddeb7d5bac0e7d6c8c0e5f97a17780 398 Pfam PF00589 Phage integrase family 185 384 2.1E-42 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Trebr_1127 44ddeb7d5bac0e7d6c8c0e5f97a17780 398 SUPERFAMILY SSF56349 86 384 3.83E-44 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Trebr_1127 44ddeb7d5bac0e7d6c8c0e5f97a17780 398 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 91 164 1.1E-15 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Trebr_1127 44ddeb7d5bac0e7d6c8c0e5f97a17780 398 TIGRFAM TIGR02249 integrase_gron: integron integrase 91 398 4.3E-123 T 13-10-2018 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 SMART SM00954 46 177 3.9E-20 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 SMART SM00028 294 327 3.7E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 SMART SM00028 255 288 230.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 SMART SM00028 328 361 0.021 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 SMART SM00028 362 395 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 Pfam PF13432 Tetratricopeptide repeat 301 355 2.8E-5 T 13-10-2018 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 Gene3D G3DSA:3.30.460.10 5 158 9.3E-23 T 13-10-2018 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 SUPERFAMILY SSF81301 9 205 8.01E-33 T 13-10-2018 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 SUPERFAMILY SSF48452 256 392 2.28E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 Gene3D G3DSA:1.25.40.10 178 408 2.0E-24 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1833 533bccfc0854c45bcf82b5e068791006 413 Pfam PF04607 Region found in RelA / SpoT proteins 46 173 9.2E-21 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 Trebr_1697 f6a50b4b53a4365d638f7c42868273cc 465 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 11 74 2.4E-10 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1697 f6a50b4b53a4365d638f7c42868273cc 465 Gene3D G3DSA:3.40.50.12240 2 459 5.8E-177 T 13-10-2018 Trebr_1697 f6a50b4b53a4365d638f7c42868273cc 465 PIRSF PIRSF039114 1 464 1.3E-224 T 13-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1697 f6a50b4b53a4365d638f7c42868273cc 465 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 350 1.5E-65 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1697 f6a50b4b53a4365d638f7c42868273cc 465 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 3 459 58.891 T 13-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1697 f6a50b4b53a4365d638f7c42868273cc 465 SUPERFAMILY SSF47917 362 420 3.92E-7 T 13-10-2018 Trebr_1697 f6a50b4b53a4365d638f7c42868273cc 465 SUPERFAMILY SSF52540 79 355 3.67E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1697 f6a50b4b53a4365d638f7c42868273cc 465 SUPERFAMILY SSF50615 8 65 6.98E-5 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 SUPERFAMILY SSF52935 329 484 4.58E-33 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 SUPERFAMILY SSF50800 72 172 9.59E-18 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 SUPERFAMILY SSF52009 502 598 2.09E-8 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 Gene3D G3DSA:3.40.1380.20 345 468 1.1E-172 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 Pfam PF00391 PEP-utilising enzyme, mobile domain 525 591 2.8E-6 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 PRINTS PR01050 Pyruvate kinase family signature 300 318 1.3E-74 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 PRINTS PR01050 Pyruvate kinase family signature 250 274 1.3E-74 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 PRINTS PR01050 Pyruvate kinase family signature 319 335 1.3E-74 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 PRINTS PR01050 Pyruvate kinase family signature 193 207 1.3E-74 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 PRINTS PR01050 Pyruvate kinase family signature 275 299 1.3E-74 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 PRINTS PR01050 Pyruvate kinase family signature 223 249 1.3E-74 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 PRINTS PR01050 Pyruvate kinase family signature 61 77 1.3E-74 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 Gene3D G3DSA:3.20.20.60 5 344 1.1E-172 T 13-10-2018 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 Gene3D G3DSA:2.40.33.10 73 174 1.1E-172 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 SUPERFAMILY SSF51621 2 346 4.89E-96 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 Gene3D G3DSA:3.50.30.10 490 600 1.0E-10 T 13-10-2018 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 ProSitePatterns PS00110 Pyruvate kinase active site signature. 221 233 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 4 480 8.3E-161 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 Pfam PF00224 Pyruvate kinase, barrel domain 4 344 1.1E-131 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_1118 9de77f88217d9309ed871a0d45bba969 600 Pfam PF02887 Pyruvate kinase, alpha/beta domain 370 481 8.7E-29 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 Hamap MF_00600 60 kDa chaperonin [groL]. 1 545 41.791 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 SUPERFAMILY SSF52029 183 375 1.17E-82 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 Gene3D G3DSA:3.30.260.10 137 409 2.9E-231 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 SUPERFAMILY SSF48592 6 522 1.45E-75 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 PRINTS PR00298 60kDa chaperonin signature 82 109 1.4E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 PRINTS PR00298 60kDa chaperonin signature 26 52 1.4E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 PRINTS PR00298 60kDa chaperonin signature 267 290 1.4E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 PRINTS PR00298 60kDa chaperonin signature 397 418 1.4E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 PRINTS PR00298 60kDa chaperonin signature 349 374 1.4E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 Gene3D G3DSA:3.50.7.10 172 378 2.9E-231 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 SUPERFAMILY SSF54849 136 203 1.1E-20 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 Gene3D G3DSA:1.10.560.10 7 522 2.9E-231 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 524 4.4E-98 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Trebr_0753 1b2e53248852278b2450ffcef790ae77 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 528 6.5E-260 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Trebr_2358 05e38770d55317c405fb626e04fbdfab 127 Pfam PF13411 MerR HTH family regulatory protein 12 77 4.9E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_2358 05e38770d55317c405fb626e04fbdfab 127 SUPERFAMILY SSF46955 12 104 6.41E-14 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily Trebr_2358 05e38770d55317c405fb626e04fbdfab 127 Gene3D G3DSA:1.10.1660.10 8 82 1.8E-17 T 13-10-2018 Trebr_2358 05e38770d55317c405fb626e04fbdfab 127 SMART SM00422 12 82 0.007 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 SUPERFAMILY SSF47226 13 130 4.97E-19 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Gene3D G3DSA:3.30.565.10 230 417 1.5E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 SUPERFAMILY SSF52172 576 694 1.04E-29 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Pfam PF00072 Response regulator receiver domain 577 688 4.6E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 SMART SM00448 575 689 9.9E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 SMART SM00260 411 552 8.6E-5 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Pfam PF01584 CheW-like domain 424 553 2.8E-13 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 SMART SM00387 276 419 4.8E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 SUPERFAMILY SSF55874 234 416 2.75E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Gene3D G3DSA:2.40.50.180 442 507 8.8E-17 T 13-10-2018 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 SUPERFAMILY SSF50341 418 550 5.62E-16 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Gene3D G3DSA:2.30.30.40 419 548 8.8E-17 T 13-10-2018 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Gene3D G3DSA:1.20.120.160 11 136 6.1E-26 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Gene3D G3DSA:3.40.50.12740 575 696 4.4E-31 T 13-10-2018 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 417 3.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 Pfam PF01627 Hpt domain 15 100 3.1E-12 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 416 2.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 321 335 2.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 397 2.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 373 2.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1491 dd03508d2df12edb7c290da53ce5c77d 696 SMART SM00073 10 108 6.9E-13 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_2463 d90f97e12264f7a84aad39418764a7f0 250 SUPERFAMILY SSF54637 156 227 4.07E-15 T 13-10-2018 IPR029069 HotDog domain superfamily Trebr_2463 d90f97e12264f7a84aad39418764a7f0 250 SUPERFAMILY SSF54637 9 134 2.21E-21 T 13-10-2018 IPR029069 HotDog domain superfamily Trebr_2463 d90f97e12264f7a84aad39418764a7f0 250 Gene3D G3DSA:3.10.129.10 6 250 4.5E-43 T 13-10-2018 Trebr_2463 d90f97e12264f7a84aad39418764a7f0 250 Pfam PF01643 Acyl-ACP thioesterase 13 228 3.1E-26 T 13-10-2018 IPR002864 Acyl-ACP thioesterase GO:0006633|GO:0016790 Trebr_1590 55084ccce0c72888385d9cab3ca4374c 529 Pfam PF09210 Domain of unknown function (DUF1957) 428 525 1.7E-28 T 13-10-2018 IPR015293 Domain of unknown function DUF1957 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Trebr_1590 55084ccce0c72888385d9cab3ca4374c 529 SUPERFAMILY SSF88688 418 527 1.93E-25 T 13-10-2018 IPR028995 Glycoside hydrolase families 57/38, central domain superfamily Trebr_1590 55084ccce0c72888385d9cab3ca4374c 529 Gene3D G3DSA:3.20.110.10 3 406 2.4E-109 T 13-10-2018 IPR027291 Glycoside hydrolase 38, N-terminal domain superfamily Trebr_1590 55084ccce0c72888385d9cab3ca4374c 529 SUPERFAMILY SSF88713 4 399 1.46E-68 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Trebr_1590 55084ccce0c72888385d9cab3ca4374c 529 Pfam PF03065 Glycosyl hydrolase family 57 13 250 8.7E-20 T 13-10-2018 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 Trebr_1590 55084ccce0c72888385d9cab3ca4374c 529 Gene3D G3DSA:1.20.1430.10 418 529 1.5E-30 T 13-10-2018 IPR037090 Glycoside hydrolase families 57, central domain KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Trebr_0674 6e67813eb67c1292d612138eaad09d9d 366 SUPERFAMILY SSF56235 13 360 8.32E-77 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0674 6e67813eb67c1292d612138eaad09d9d 366 PIRSF PIRSF018774 1 366 6.5E-157 T 13-10-2018 IPR012375 Glutamate synthase large subunit domain 1 stand-alone protein Trebr_0674 6e67813eb67c1292d612138eaad09d9d 366 Gene3D G3DSA:3.60.20.10 48 364 1.5E-48 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0674 6e67813eb67c1292d612138eaad09d9d 366 Pfam PF00310 Glutamine amidotransferases class-II 101 225 3.9E-8 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 Gene3D G3DSA:2.60.40.10 161 251 8.5E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 Gene3D G3DSA:2.60.40.10 50 154 5.3E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 Gene3D G3DSA:2.60.40.10 256 351 3.3E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 Gene3D G3DSA:2.60.40.10 463 571 2.3E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 SMART SM00060 259 342 0.033 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 SMART SM00060 160 242 69.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 SMART SM00060 49 147 66.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 SUPERFAMILY SSF49265 255 337 3.73E-9 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 SUPERFAMILY SSF49265 495 562 6.88E-7 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_1410 22deae814afb861c14cdc2e40bd1eaa9 722 SUPERFAMILY SSF49265 161 246 2.89E-5 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 Pfam PF04408 Helicase associated domain (HA2) 403 478 1.8E-14 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 Pfam PF00271 Helicase conserved C-terminal domain 217 341 4.5E-15 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 SMART SM00847 402 494 9.3E-20 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 Gene3D G3DSA:3.40.50.300 1 181 1.0E-72 T 13-10-2018 Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 553 620 5.5E-8 T 13-10-2018 IPR011709 Domain of unknown function DUF1605 Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 122 131 - T 13-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 Gene3D G3DSA:1.20.120.1080 384 491 1.9E-12 T 13-10-2018 Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 SMART SM00490 236 342 7.3E-18 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 Pfam PF00270 DEAD/DEAH box helicase 16 164 2.9E-8 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 SUPERFAMILY SSF52540 8 518 8.52E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 SMART SM00487 5 189 3.6E-25 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_1403 88563b7b9eade69d4b5c0ecdd506d93f 853 Gene3D G3DSA:3.40.50.300 183 360 4.9E-55 T 13-10-2018 Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 Pfam PF00905 Penicillin binding protein transpeptidase domain 221 530 2.8E-55 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 Gene3D G3DSA:3.30.450.330 197 533 7.0E-84 T 13-10-2018 Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 SMART SM00740 563 621 0.0057 T 13-10-2018 IPR005543 PASTA domain Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 Gene3D G3DSA:3.40.710.10 255 453 7.0E-84 T 13-10-2018 Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 Pfam PF03793 PASTA domain 568 619 1.2E-5 T 13-10-2018 IPR005543 PASTA domain Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 SUPERFAMILY SSF54184 568 620 2.09E-8 T 13-10-2018 Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 Gene3D G3DSA:3.90.1310.30 43 196 2.5E-30 T 13-10-2018 Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 SUPERFAMILY SSF56601 194 540 1.81E-76 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 Pfam PF03717 Penicillin-binding Protein dimerisation domain 48 158 1.5E-13 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Trebr_1936 12a3791acc0bbe74f86fc0c9ca314f65 621 SUPERFAMILY SSF56519 47 180 3.4E-30 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 Gene3D G3DSA:2.130.10.10 22 331 2.6E-57 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 Pfam PF07494 Two component regulator propeller 445 463 0.0045 T 13-10-2018 IPR011110 Two component regulator propeller Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 Pfam PF07494 Two component regulator propeller 123 142 0.014 T 13-10-2018 IPR011110 Two component regulator propeller Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 Pfam PF07494 Two component regulator propeller 302 324 2.2E-4 T 13-10-2018 IPR011110 Two component regulator propeller Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 Pfam PF07494 Two component regulator propeller 488 510 5.6E-4 T 13-10-2018 IPR011110 Two component regulator propeller Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 SUPERFAMILY SSF63829 9 248 4.25E-14 T 13-10-2018 Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 SUPERFAMILY SSF63829 317 535 1.11E-19 T 13-10-2018 Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 Gene3D G3DSA:2.130.10.10 353 650 4.5E-63 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 SUPERFAMILY SSF63829 547 643 1.11E-6 T 13-10-2018 Trebr_0620 d4ae7f2da3e0e040f7d218a3a1605a1c 671 SUPERFAMILY SSF63829 166 343 1.35E-14 T 13-10-2018 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 Gene3D G3DSA:3.40.50.300 186 365 9.1E-64 T 13-10-2018 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 219 232 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 Gene3D G3DSA:3.30.450.40 4 185 3.9E-41 T 13-10-2018 IPR029016 GAF-like domain superfamily Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 281 296 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 Gene3D G3DSA:1.10.10.60 461 512 2.5E-8 T 13-10-2018 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 Pfam PF00158 Sigma-54 interaction domain 196 361 1.1E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 SMART SM00065 27 176 1.8E-18 T 13-10-2018 IPR003018 GAF domain GO:0005515 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 408 417 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 Gene3D G3DSA:1.10.8.60 366 443 5.9E-23 T 13-10-2018 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 SUPERFAMILY SSF55781 7 186 8.72E-41 T 13-10-2018 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 Pfam PF01590 GAF domain 29 165 4.8E-14 T 13-10-2018 IPR003018 GAF domain GO:0005515 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 SUPERFAMILY SSF52540 196 437 1.36E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 SUPERFAMILY SSF46689 408 511 4.3E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1719 79fcc16c8344f0aa6b874160763447b6 512 SMART SM00382 215 359 4.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 276 291 2.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 291 307 2.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 Pfam PF02311 AraC-like ligand binding domain 31 182 4.3E-9 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 Gene3D G3DSA:1.10.10.60 201 258 6.7E-13 T 13-10-2018 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 SUPERFAMILY SSF51215 21 93 7.45E-13 T 13-10-2018 IPR037923 Transcription regulator HTH-like Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 Gene3D G3DSA:1.10.10.60 259 312 3.0E-16 T 13-10-2018 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 SUPERFAMILY SSF46689 210 258 3.99E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 Pfam PF12833 Helix-turn-helix domain 230 309 7.4E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 Gene3D G3DSA:2.60.120.10 14 97 4.2E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 SUPERFAMILY SSF46689 260 309 2.28E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 SMART SM00342 224 307 2.6E-29 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_2349 b5d67dcda20f574d8d9750f3e431aaf3 315 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 303 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_0981 d3a408a01c1546e05e29750e73bf56e5 248 PIRSF PIRSF039085 2 248 1.9E-107 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Trebr_0981 d3a408a01c1546e05e29750e73bf56e5 248 Gene3D G3DSA:3.40.50.300 3 248 5.0E-76 T 13-10-2018 Trebr_0981 d3a408a01c1546e05e29750e73bf56e5 248 Pfam PF00005 ABC transporter 22 174 2.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0981 d3a408a01c1546e05e29750e73bf56e5 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0981 d3a408a01c1546e05e29750e73bf56e5 248 SMART SM00382 30 222 6.3E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0981 d3a408a01c1546e05e29750e73bf56e5 248 SUPERFAMILY SSF52540 5 244 3.17E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0739 34ac94a55424c1cbfb9295ee3c9053f5 174 Gene3D G3DSA:3.40.630.30 1 170 4.1E-43 T 13-10-2018 Trebr_0739 34ac94a55424c1cbfb9295ee3c9053f5 174 Pfam PF13302 Acetyltransferase (GNAT) domain 3 139 4.0E-19 T 13-10-2018 IPR000182 GNAT domain Trebr_0739 34ac94a55424c1cbfb9295ee3c9053f5 174 SUPERFAMILY SSF55729 3 164 5.59E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0206 bbad8499bb6cd32c59794e607074d921 171 Gene3D G3DSA:3.40.50.360 2 168 1.2E-43 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0206 bbad8499bb6cd32c59794e607074d921 171 SUPERFAMILY SSF52218 6 136 5.11E-22 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0206 bbad8499bb6cd32c59794e607074d921 171 Pfam PF12682 Flavodoxin 7 121 5.8E-21 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Trebr_0735 f12df4d97e065b4d39b6583e7e3e4e7d 370 Gene3D G3DSA:3.40.640.10 1 244 2.1E-72 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0735 f12df4d97e065b4d39b6583e7e3e4e7d 370 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 18 368 7.7E-99 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_0735 f12df4d97e065b4d39b6583e7e3e4e7d 370 Gene3D G3DSA:3.90.1150.10 245 370 6.4E-31 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0735 f12df4d97e065b4d39b6583e7e3e4e7d 370 SUPERFAMILY SSF53383 7 370 3.82E-103 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0735 f12df4d97e065b4d39b6583e7e3e4e7d 370 PIRSF PIRSF000390 3 370 1.2E-105 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 Hamap MF_01498 DNA repair protein RadA [radA]. 24 455 39.833 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 Pfam PF13541 Subunit ChlI of Mg-chelatase 344 437 4.1E-10 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 Pfam PF13481 AAA domain 85 231 3.3E-13 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 PRINTS PR01874 DNA repair protein radA signature 182 206 6.8E-67 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 PRINTS PR01874 DNA repair protein radA signature 221 249 6.8E-67 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 PRINTS PR01874 DNA repair protein radA signature 255 281 6.8E-67 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 PRINTS PR01874 DNA repair protein radA signature 13 37 6.8E-67 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 PRINTS PR01874 DNA repair protein radA signature 330 353 6.8E-67 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 PRINTS PR01874 DNA repair protein radA signature 84 112 6.8E-67 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 Gene3D G3DSA:3.30.230.10 302 455 7.0E-13 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 Gene3D G3DSA:3.40.50.300 68 286 5.0E-41 T 13-10-2018 Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 SMART SM00382 92 252 1.3E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 SUPERFAMILY SSF54211 262 455 1.4E-28 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 SUPERFAMILY SSF52540 73 295 1.47E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0418 872107fffc8aed9c0fc7cb621af6cde4 462 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 441 4.8E-136 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 Pfam PF13432 Tetratricopeptide repeat 98 159 0.008 T 13-10-2018 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 Pfam PF13432 Tetratricopeptide repeat 31 81 7.6E-7 T 13-10-2018 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 Gene3D G3DSA:1.25.40.10 27 94 2.7E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 SUPERFAMILY SSF48452 29 192 5.12E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 Gene3D G3DSA:1.25.40.10 95 209 7.6E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 SMART SM00028 127 160 0.028 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 SMART SM00028 60 93 1.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 SMART SM00028 24 57 36.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 SMART SM00028 161 194 130.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0183 de6c0e0bdd7a022029626914cacd25fe 210 SMART SM00028 94 126 46.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 Pfam PF00271 Helicase conserved C-terminal domain 727 844 6.3E-16 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 SUPERFAMILY SSF56024 120 203 3.66E-5 T 13-10-2018 Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 Pfam PF13091 PLD-like domain 20 198 1.9E-11 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 SMART SM00487 260 418 3.5E-7 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 SUPERFAMILY SSF52540 280 846 8.75E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 SMART SM00490 754 844 4.0E-8 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 Gene3D G3DSA:3.40.50.300 673 877 1.2E-27 T 13-10-2018 Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 Gene3D G3DSA:3.40.50.300 265 406 9.0E-17 T 13-10-2018 Trebr_2458 44a1d3fc7162eb0a264fbf62545b40c4 1137 Pfam PF00176 SNF2 family N-terminal domain 355 478 6.8E-8 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Trebr_2189 acde928ce2de26cbd9c2a8aba5a7404e 421 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 12 411 1.1E-131 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Trebr_2189 acde928ce2de26cbd9c2a8aba5a7404e 421 SUPERFAMILY SSF53720 2 421 1.3E-106 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Trebr_2189 acde928ce2de26cbd9c2a8aba5a7404e 421 Gene3D G3DSA:3.40.605.10 15 416 1.3E-149 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Trebr_2189 acde928ce2de26cbd9c2a8aba5a7404e 421 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 2 421 37.231 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Trebr_2189 acde928ce2de26cbd9c2a8aba5a7404e 421 Pfam PF00171 Aldehyde dehydrogenase family 2 276 4.4E-10 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Trebr_2189 acde928ce2de26cbd9c2a8aba5a7404e 421 PIRSF PIRSF000151 1 421 1.1E-158 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Trebr_2189 acde928ce2de26cbd9c2a8aba5a7404e 421 Gene3D G3DSA:3.40.309.10 222 379 1.3E-149 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 241 283 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 Pfam PF12833 Helix-turn-helix domain 210 288 6.1E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 Gene3D G3DSA:1.10.10.60 187 237 3.0E-15 T 13-10-2018 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 Pfam PF02311 AraC-like ligand binding domain 26 164 1.9E-9 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 SMART SM00342 204 287 9.9E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 Gene3D G3DSA:1.10.10.60 238 291 1.4E-17 T 13-10-2018 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 271 7.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 287 7.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 SUPERFAMILY SSF46689 240 289 1.79E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 Gene3D G3DSA:2.60.120.10 7 96 7.5E-6 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 SUPERFAMILY SSF51215 32 167 3.66E-9 T 13-10-2018 IPR037923 Transcription regulator HTH-like Trebr_0603 fec1a9a23f4563a53484416c598543bb 291 SUPERFAMILY SSF46689 188 237 1.08E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Pfam PF07517 SecA DEAD-like domain 8 407 1.1E-124 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Gene3D G3DSA:3.40.50.300 423 631 2.9E-88 T 13-10-2018 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Pfam PF01043 SecA preprotein cross-linking domain 236 364 1.9E-34 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Gene3D G3DSA:3.10.450.50 856 916 5.9E-10 T 13-10-2018 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 SUPERFAMILY SSF81767 236 373 4.58E-37 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 ProSitePatterns PS01312 SecA family signature. 506 521 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 SUPERFAMILY SSF81886 632 906 1.57E-63 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 825 0.0 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Gene3D G3DSA:1.10.3060.10 633 840 1.4E-56 T 13-10-2018 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 PRINTS PR00906 SecA protein signature 170 190 1.3E-69 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 PRINTS PR00906 SecA protein signature 382 399 1.3E-69 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 PRINTS PR00906 SecA protein signature 63 87 1.3E-69 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 PRINTS PR00906 SecA protein signature 101 115 1.3E-69 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 PRINTS PR00906 SecA protein signature 419 432 1.3E-69 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 PRINTS PR00906 SecA protein signature 345 367 1.3E-69 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 PRINTS PR00906 SecA protein signature 117 127 1.3E-69 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Gene3D G3DSA:3.90.1440.10 229 374 7.8E-166 T 13-10-2018 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 839 19.608 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 SMART SM00957 6 408 5.4E-262 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Pfam PF07516 SecA Wing and Scaffold domain 629 836 2.2E-56 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 SUPERFAMILY SSF52540 423 630 6.83E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Pfam PF02810 SEC-C motif 898 916 3.2E-10 T 13-10-2018 IPR004027 SEC-C motif Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 SMART SM00958 228 364 1.3E-59 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 Gene3D G3DSA:3.40.50.300 23 421 7.8E-166 T 13-10-2018 Trebr_1308 69980a6482ad025de705a4d7cc0c0d66 916 SUPERFAMILY SSF52540 9 421 2.66E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0424 77726e125aea4772b3d273de85a00f0c 302 Gene3D G3DSA:1.10.3720.10 3 289 8.7E-52 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0424 77726e125aea4772b3d273de85a00f0c 302 SUPERFAMILY SSF161098 8 302 1.68E-60 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0424 77726e125aea4772b3d273de85a00f0c 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 295 1.1E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 SUPERFAMILY SSF52540 476 747 1.38E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 Gene3D G3DSA:1.10.8.280 147 276 3.0E-155 T 13-10-2018 Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 Gene3D G3DSA:3.40.50.300 480 772 1.0E-103 T 13-10-2018 Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 Gene3D G3DSA:3.40.50.300 8 455 3.0E-155 T 13-10-2018 Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 ProSitePatterns PS00211 ABC transporters family signature. 354 368 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 SUPERFAMILY SSF52540 13 436 6.77E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 Pfam PF00005 ABC transporter 485 696 8.9E-15 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 ProSitePatterns PS00211 ABC transporters family signature. 669 683 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 Gene3D G3DSA:1.20.1580.10 93 354 3.0E-155 T 13-10-2018 Trebr_0058 2e532f85c42466992f4a1e4b04ce73ca 776 Gene3D G3DSA:1.20.1580.10 563 601 1.0E-103 T 13-10-2018 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 Gene3D G3DSA:3.30.830.10 851 1041 2.7E-39 T 13-10-2018 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 Gene3D G3DSA:3.30.830.10 280 508 7.9E-54 T 13-10-2018 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 SUPERFAMILY SSF63411 864 1020 1.29E-20 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 SUPERFAMILY SSF63411 13 248 5.7E-35 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 Gene3D G3DSA:3.30.830.10 555 797 2.6E-62 T 13-10-2018 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 Pfam PF00675 Insulinase (Peptidase family M16) 64 148 1.7E-6 T 13-10-2018 IPR011765 Peptidase M16, N-terminal Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 SUPERFAMILY SSF63411 281 541 1.26E-38 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 Pfam PF08367 Peptidase M16C associated 488 741 2.0E-44 T 13-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 SMART SM01264 486 742 2.7E-60 T 13-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 SUPERFAMILY SSF63411 547 787 1.25E-38 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 Gene3D G3DSA:3.30.830.10 1 255 3.7E-75 T 13-10-2018 Trebr_1475 39fccb9252d6ff68f870360269270cd7 1045 Pfam PF05193 Peptidase M16 inactive domain 209 409 7.7E-13 T 13-10-2018 IPR007863 Peptidase M16, C-terminal Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 SUPERFAMILY SSF52374 3 399 2.81E-89 T 13-10-2018 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 Pfam PF01588 Putative tRNA binding domain 626 709 4.0E-23 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 Gene3D G3DSA:2.20.28.20 138 172 1.2E-162 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 Pfam PF08264 Anticodon-binding domain of tRNA 432 517 5.4E-6 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 SUPERFAMILY SSF47323 405 574 3.74E-31 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 Gene3D G3DSA:1.10.730.10 396 573 2.3E-33 T 13-10-2018 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 SUPERFAMILY SSF57770 138 172 2.35E-12 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 Gene3D G3DSA:2.40.50.140 622 780 2.4E-32 T 13-10-2018 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 Pfam PF09334 tRNA synthetases class I (M) 5 413 5.4E-152 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 5 524 6.9E-170 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 SUPERFAMILY SSF50249 624 740 1.08E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 PRINTS PR01041 Methionyl-tRNA synthetase signature 252 263 1.7E-31 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 PRINTS PR01041 Methionyl-tRNA synthetase signature 305 320 1.7E-31 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 PRINTS PR01041 Methionyl-tRNA synthetase signature 86 97 1.7E-31 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 PRINTS PR01041 Methionyl-tRNA synthetase signature 400 411 1.7E-31 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 PRINTS PR01041 Methionyl-tRNA synthetase signature 38 52 1.7E-31 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 PRINTS PR01041 Methionyl-tRNA synthetase signature 6 19 1.7E-31 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 Gene3D G3DSA:3.40.50.620 5 395 1.2E-162 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1376 bd6c5633b57818e1201e83109d68eb02 781 Hamap MF_00098 Methionine--tRNA ligase [metG]. 2 573 37.805 T 13-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Trebr_2061 0b20405ba302067e2d4297cfcb45e104 122 Gene3D G3DSA:3.30.1330.40 1 122 1.4E-45 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Trebr_2061 0b20405ba302067e2d4297cfcb45e104 122 Pfam PF01042 Endoribonuclease L-PSP 7 121 4.7E-40 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Trebr_2061 0b20405ba302067e2d4297cfcb45e104 122 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 2 121 5.0E-48 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 Trebr_2061 0b20405ba302067e2d4297cfcb45e104 122 SUPERFAMILY SSF55298 2 121 1.88E-41 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Trebr_0961 5beaf88bf92aacb6a1959e6a7a08a811 138 PIRSF PIRSF002889 1 138 6.3E-21 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Trebr_0961 5beaf88bf92aacb6a1959e6a7a08a811 138 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 4 136 2.7E-35 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Trebr_0961 5beaf88bf92aacb6a1959e6a7a08a811 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 14 34 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Trebr_2489 d5a767e2c23b83679c70b3b7d8a44dda 686 Gene3D G3DSA:3.80.30.20 396 654 3.9E-13 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Trebr_2489 d5a767e2c23b83679c70b3b7d8a44dda 686 SMART SM00729 394 645 3.1E-9 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_2489 d5a767e2c23b83679c70b3b7d8a44dda 686 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 81 659 3.1E-240 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 Trebr_2489 d5a767e2c23b83679c70b3b7d8a44dda 686 SUPERFAMILY SSF102114 399 632 5.89E-13 T 13-10-2018 Trebr_2489 d5a767e2c23b83679c70b3b7d8a44dda 686 Pfam PF08497 Radical SAM N-terminal 81 397 8.4E-121 T 13-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal Trebr_2489 d5a767e2c23b83679c70b3b7d8a44dda 686 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 81 660 51.51 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 Trebr_2489 d5a767e2c23b83679c70b3b7d8a44dda 686 Pfam PF04055 Radical SAM superfamily 400 602 6.2E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_2489 d5a767e2c23b83679c70b3b7d8a44dda 686 Pfam PF11842 Domain of unknown function (DUF3362) 613 684 2.8E-26 T 13-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 SMART SM00387 779 922 9.5E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 Pfam PF01627 Hpt domain 621 714 2.7E-8 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 782 920 8.1E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 SUPERFAMILY SSF55874 756 919 3.01E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 TIGRFAM TIGR00836 amt: ammonium transporter 10 408 3.6E-124 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 Gene3D G3DSA:1.10.3430.10 1 423 1.5E-135 T 13-10-2018 IPR029020 Ammonium/urea transporter Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 Gene3D G3DSA:3.30.450.20 451 603 1.1E-7 T 13-10-2018 Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 SUPERFAMILY SSF47226 619 707 3.01E-12 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 Pfam PF00909 Ammonium Transporter Family 11 408 8.2E-121 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 ProSitePatterns PS01219 Ammonium transporters signature. 166 191 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 SUPERFAMILY SSF111352 8 391 4.71E-107 T 13-10-2018 Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 Gene3D G3DSA:3.30.565.10 736 920 3.8E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0196 7432c445d32aacbc23b1495f45c9509f 925 Gene3D G3DSA:1.20.120.160 619 724 7.4E-10 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 SMART SM00387 360 480 8.3E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 Gene3D G3DSA:1.10.287.130 230 315 1.4E-14 T 13-10-2018 Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 Gene3D G3DSA:3.30.565.10 316 480 2.7E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 SMART SM00388 253 315 6.5E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 SUPERFAMILY SSF55874 305 479 3.93E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 479 1.7E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 SUPERFAMILY SSF47384 242 316 6.08E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 461 1.4E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 422 1.4E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 436 1.4E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1619 81bb23d885a7d3b9c653e1307dc92afc 480 Pfam PF00512 His Kinase A (phospho-acceptor) domain 254 315 7.3E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 8 72 8.2E-10 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 Gene3D G3DSA:2.40.30.20 1 75 1.4E-12 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 Gene3D G3DSA:3.40.50.300 77 438 1.4E-153 T 13-10-2018 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 431 440 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 88 209 7.4E-34 T 13-10-2018 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 Gene3D G3DSA:1.10.1140.10 439 575 4.3E-13 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 SUPERFAMILY SSF52540 190 445 5.6E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 Gene3D G3DSA:2.40.50.100 119 191 1.4E-153 T 13-10-2018 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 3 577 43.994 T 13-10-2018 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1185 ad3e115bbe9bf202e56fd898abb8ea5d 589 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 220 440 5.2E-77 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1317 753f0deebbe324ac2ceb5c990c4a4fd9 317 Gene3D G3DSA:1.20.81.30 179 283 6.7E-9 T 13-10-2018 Trebr_1317 753f0deebbe324ac2ceb5c990c4a4fd9 317 Gene3D G3DSA:1.20.81.30 3 111 2.3E-10 T 13-10-2018 Trebr_1317 753f0deebbe324ac2ceb5c990c4a4fd9 317 Pfam PF00482 Type II secretion system (T2SS), protein F 191 303 9.3E-13 T 13-10-2018 IPR018076 Type II secretion system F domain Trebr_1317 753f0deebbe324ac2ceb5c990c4a4fd9 317 Pfam PF00482 Type II secretion system (T2SS), protein F 10 136 2.1E-14 T 13-10-2018 IPR018076 Type II secretion system F domain Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:3.90.1110.10 292 405 5.9E-25 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Pfam PF04565 RNA polymerase Rpb2, domain 3 479 547 4.4E-30 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:2.40.270.10 988 1051 2.6E-18 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 10 1151 12.057 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:2.40.50.100 680 758 4.3E-25 T 13-10-2018 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 14 900 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:3.90.1100.10 406 598 7.1E-70 T 13-10-2018 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:3.90.1100.10 613 679 8.0E-20 T 13-10-2018 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:3.90.1100.10 17 155 7.0E-48 T 13-10-2018 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:2.40.50.150 790 934 5.3E-58 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Pfam PF04561 RNA polymerase Rpb2, domain 2 313 420 7.4E-19 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Pfam PF04561 RNA polymerase Rpb2, domain 2 156 217 9.5E-6 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 ProSitePatterns PS01166 RNA polymerases beta chain signature. 926 938 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:3.90.1800.10 1061 1115 6.3E-10 T 13-10-2018 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Gene3D G3DSA:3.90.1110.10 156 274 2.1E-21 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Pfam PF04560 RNA polymerase Rpb2, domain 7 1075 1149 3.1E-24 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 SUPERFAMILY SSF64484 16 1156 0.0 T 13-10-2018 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Pfam PF04563 RNA polymerase beta subunit 25 464 4.6E-26 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Pfam PF00562 RNA polymerase Rpb2, domain 6 707 1073 2.2E-155 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2301 6acb716b3dcfd335bded1b973a82b04c 1173 Pfam PF10385 RNA polymerase beta subunit external 1 domain 557 622 2.8E-21 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 SUPERFAMILY SSF55120 84 248 6.62E-36 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 123 137 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 Gene3D G3DSA:3.30.70.580 85 248 4.6E-47 T 13-10-2018 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 Pfam PF00849 RNA pseudouridylate synthase 85 213 5.3E-17 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 SMART SM00363 24 83 6.7E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 Pfam PF01479 S4 domain 25 70 7.4E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 89 244 7.2E-42 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 Gene3D G3DSA:3.10.290.10 20 78 6.8E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 SUPERFAMILY SSF55174 24 108 2.86E-19 T 13-10-2018 Trebr_1722 9eb6b39b9a8b0adabf10c1de921ab24f 257 Gene3D G3DSA:3.30.70.1560 152 231 4.6E-47 T 13-10-2018 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 Pfam PF04545 Sigma-70, region 4 203 251 1.2E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 Gene3D G3DSA:1.20.140.160 101 257 1.2E-47 T 13-10-2018 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 Pfam PF04542 Sigma-70 region 2 30 102 9.9E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 SUPERFAMILY SSF88659 103 180 5.67E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 SUPERFAMILY SSF88946 7 102 8.63E-27 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 Pfam PF04539 Sigma-70 region 3 110 183 4.0E-7 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 30 255 9.5E-86 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 PIRSF PIRSF000770 6 261 9.6E-55 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 Gene3D G3DSA:1.10.1740.10 16 100 8.8E-31 T 13-10-2018 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 PRINTS PR00046 Major sigma-70 factor signature 207 219 3.0E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 PRINTS PR00046 Major sigma-70 factor signature 239 250 3.0E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 PRINTS PR00046 Major sigma-70 factor signature 57 70 3.0E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 PRINTS PR00046 Major sigma-70 factor signature 81 89 3.0E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 PRINTS PR00046 Major sigma-70 factor signature 224 239 3.0E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 SUPERFAMILY SSF88659 167 256 2.43E-22 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1145 0e20c247dc00ffc1a51dd0b0186fe863 262 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 254 5.3E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Trebr_2129 02077305507466ac5daea7c9e64fad51 348 SUPERFAMILY SSF52540 4 196 1.75E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2129 02077305507466ac5daea7c9e64fad51 348 SUPERFAMILY SSF48019 219 330 1.07E-6 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Trebr_2129 02077305507466ac5daea7c9e64fad51 348 Gene3D G3DSA:3.40.50.300 2 124 8.0E-8 T 13-10-2018 Trebr_2129 02077305507466ac5daea7c9e64fad51 348 Gene3D G3DSA:1.10.8.60 134 199 3.9E-6 T 13-10-2018 Trebr_2129 02077305507466ac5daea7c9e64fad51 348 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 4 328 1.1E-28 T 13-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 Trebr_2129 02077305507466ac5daea7c9e64fad51 348 Gene3D G3DSA:1.20.272.10 200 335 9.1E-9 T 13-10-2018 Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 SUPERFAMILY SSF52540 28 354 2.49E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 SMART SM00487 7 193 1.1E-16 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 Gene3D G3DSA:3.40.50.300 187 360 1.4E-43 T 13-10-2018 Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 Pfam PF08482 ATP-dependent helicase C-terminal 690 796 5.7E-30 T 13-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 SMART SM00490 242 343 9.6E-13 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 PIRSF PIRSF005496 463 798 1.3E-55 T 13-10-2018 Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 PIRSF PIRSF005496 5 479 2.3E-140 T 13-10-2018 Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 Gene3D G3DSA:3.40.50.300 5 186 1.3E-49 T 13-10-2018 Trebr_2418 d16d2ca6a1ca8ffb0e42a959aad3d3af 802 Pfam PF00271 Helicase conserved C-terminal domain 224 342 5.9E-10 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_0904 b0cf00951f0b317a8bef71ce7d6fb510 195 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 3 194 17.773 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Trebr_0904 b0cf00951f0b317a8bef71ce7d6fb510 195 Gene3D G3DSA:2.30.30.240 92 192 3.3E-7 T 13-10-2018 Trebr_0904 b0cf00951f0b317a8bef71ce7d6fb510 195 SUPERFAMILY SSF50447 2 86 1.05E-13 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_0904 b0cf00951f0b317a8bef71ce7d6fb510 195 Gene3D G3DSA:2.40.30.60 3 89 2.6E-13 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 Trebr_0904 b0cf00951f0b317a8bef71ce7d6fb510 195 SUPERFAMILY SSF50346 96 188 1.96E-5 T 13-10-2018 IPR011033 PRC-barrel-like superfamily Trebr_0904 b0cf00951f0b317a8bef71ce7d6fb510 195 Pfam PF05239 PRC-barrel domain 93 182 3.2E-5 T 13-10-2018 IPR027275 PRC-barrel domain Trebr_0904 b0cf00951f0b317a8bef71ce7d6fb510 195 Pfam PF01782 RimM N-terminal domain 5 86 8.2E-15 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 Trebr_0904 b0cf00951f0b317a8bef71ce7d6fb510 195 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 4 188 5.3E-27 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Trebr_1663 f41c98f315c682a2c6ab50d69e44c15e 216 SUPERFAMILY SSF46955 5 54 2.01E-10 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily Trebr_1663 f41c98f315c682a2c6ab50d69e44c15e 216 Gene3D G3DSA:3.40.930.10 62 216 1.6E-33 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_1663 f41c98f315c682a2c6ab50d69e44c15e 216 SUPERFAMILY SSF55804 69 214 2.09E-28 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_1663 f41c98f315c682a2c6ab50d69e44c15e 216 Gene3D G3DSA:1.10.1660.10 4 53 1.3E-7 T 13-10-2018 Trebr_1663 f41c98f315c682a2c6ab50d69e44c15e 216 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 51 9.0E-17 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 Trebr_1663 f41c98f315c682a2c6ab50d69e44c15e 216 Pfam PF12728 Helix-turn-helix domain 6 54 9.9E-19 T 13-10-2018 Trebr_1663 f41c98f315c682a2c6ab50d69e44c15e 216 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 73 213 6.9E-29 T 13-10-2018 IPR002178 PTS EIIA type-2 domain Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 269 328 2.0E-16 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 Gene3D G3DSA:2.170.120.12 57 186 9.8E-72 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 258 320 2.9E-26 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 181 237 4.2E-11 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 Gene3D G3DSA:1.10.150.20 235 349 2.5E-31 T 13-10-2018 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 SMART SM00662 27 243 1.4E-56 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 34 74 1.5E-12 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 Gene3D G3DSA:3.30.1360.10 23 234 9.8E-72 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 75 168 2.9E-14 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 SUPERFAMILY SSF56553 57 187 4.19E-25 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 SUPERFAMILY SSF47789 263 332 7.98E-25 T 13-10-2018 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 7 329 34.01 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 27 328 2.5E-108 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2270 25e5088457e71875182efe5bfcc0d5b4 350 SUPERFAMILY SSF55257 14 242 1.83E-30 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Trebr_2162 f927ed7ddceccaf356a07e65f4198899 305 SUPERFAMILY SSF103481 43 142 7.45E-11 T 13-10-2018 Trebr_2162 f927ed7ddceccaf356a07e65f4198899 305 SUPERFAMILY SSF103481 183 284 3.01E-11 T 13-10-2018 Trebr_2162 f927ed7ddceccaf356a07e65f4198899 305 Pfam PF00892 EamA-like transporter family 148 283 9.2E-16 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Trebr_2162 f927ed7ddceccaf356a07e65f4198899 305 Pfam PF00892 EamA-like transporter family 14 139 5.7E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 Gene3D G3DSA:3.30.1370.100 546 634 5.4E-36 T 13-10-2018 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 98 104 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 6 678 21.259 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 128 6.5E-9 T 13-10-2018 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 Gene3D G3DSA:3.30.565.10 7 213 9.2E-52 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 Gene3D G3DSA:2.30.42.20 511 674 5.4E-36 T 13-10-2018 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 267 365 2.7E-23 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 SUPERFAMILY SSF54211 265 366 1.4E-21 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 SUPERFAMILY SSF55874 5 212 6.16E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 Pfam PF08676 MutL C terminal dimerisation domain 507 639 2.5E-21 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 SMART SM00853 506 639 8.2E-22 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 Gene3D G3DSA:3.30.230.10 262 365 1.5E-22 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 SUPERFAMILY SSF118116 505 680 1.44E-25 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 7 345 3.2E-80 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 Trebr_1844 4f7e0dbc4c95d2f8880122a214efb278 681 SMART SM01340 224 367 6.7E-26 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 SUPERFAMILY SSF48452 598 853 1.59E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 SMART SM00028 950 983 0.094 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 SMART SM00028 600 633 3.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 SMART SM00028 984 1017 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 SMART SM00028 825 858 270.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 SMART SM00028 870 903 13.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 Gene3D G3DSA:1.25.40.10 485 764 4.8E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 SUPERFAMILY SSF81901 807 1013 2.88E-18 T 13-10-2018 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 Gene3D G3DSA:1.25.40.10 798 921 4.2E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 Pfam PF13432 Tetratricopeptide repeat 925 980 6.3E-5 T 13-10-2018 Trebr_0581 536d5c81d28b63d52d720bb7a5a7a100 1129 Gene3D G3DSA:1.25.40.10 922 1023 4.7E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0843 d1c421c787b7bcd876a78e6aa836b8d9 321 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 93 109 6.8E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0843 d1c421c787b7bcd876a78e6aa836b8d9 321 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 78 93 6.8E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0843 d1c421c787b7bcd876a78e6aa836b8d9 321 SUPERFAMILY SSF46689 63 115 3.76E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0843 d1c421c787b7bcd876a78e6aa836b8d9 321 SMART SM00342 26 109 1.8E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0843 d1c421c787b7bcd876a78e6aa836b8d9 321 Pfam PF12833 Helix-turn-helix domain 35 110 3.5E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0843 d1c421c787b7bcd876a78e6aa836b8d9 321 Gene3D G3DSA:1.10.10.60 3 58 1.6E-7 T 13-10-2018 Trebr_0843 d1c421c787b7bcd876a78e6aa836b8d9 321 Gene3D G3DSA:1.10.10.60 59 113 3.7E-15 T 13-10-2018 Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 SUPERFAMILY SSF56235 1 201 4.55E-55 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 380 1.2E-110 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 Pfam PF13537 Glutamine amidotransferase domain 56 174 1.0E-41 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 Gene3D G3DSA:3.60.20.10 15 201 3.9E-66 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 Pfam PF00733 Asparagine synthase 219 373 1.2E-55 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 Gene3D G3DSA:3.40.50.620 202 534 2.4E-112 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 SUPERFAMILY SSF52402 217 499 2.29E-75 T 13-10-2018 Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 PIRSF PIRSF001589 1 372 6.3E-99 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Trebr_0693 0ba96256a21283171d3cd8cfd8f669cf 576 PIRSF PIRSF001589 369 566 5.3E-29 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 SMART SM00342 173 256 1.5E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 Gene3D G3DSA:1.10.10.60 207 262 3.1E-17 T 13-10-2018 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 SUPERFAMILY SSF46689 209 257 3.36E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 Pfam PF12833 Helix-turn-helix domain 180 257 1.4E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 SUPERFAMILY SSF46689 157 207 3.58E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 Gene3D G3DSA:1.10.10.60 154 206 3.4E-11 T 13-10-2018 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 Pfam PF02311 AraC-like ligand binding domain 12 95 4.4E-18 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 SUPERFAMILY SSF51215 6 144 1.1E-24 T 13-10-2018 IPR037923 Transcription regulator HTH-like Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 Gene3D G3DSA:2.60.120.280 21 115 1.1E-8 T 13-10-2018 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 252 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 225 240 1.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0046 82e86718bc7a6cd0d6036f12da1f09e4 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 256 1.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_1103 36600551d26feb699b3acb27307c1930 511 SUPERFAMILY SSF89095 330 435 2.09E-32 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Trebr_1103 36600551d26feb699b3acb27307c1930 511 Gene3D G3DSA:1.10.10.410 448 510 4.2E-25 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Trebr_1103 36600551d26feb699b3acb27307c1930 511 Pfam PF02934 GatB/GatE catalytic domain 8 322 1.0E-99 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 Trebr_1103 36600551d26feb699b3acb27307c1930 511 Gene3D G3DSA:1.10.150.380 330 447 4.7E-37 T 13-10-2018 Trebr_1103 36600551d26feb699b3acb27307c1930 511 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 171 185 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 Trebr_1103 36600551d26feb699b3acb27307c1930 511 Pfam PF02637 GatB domain 362 508 5.4E-52 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Trebr_1103 36600551d26feb699b3acb27307c1930 511 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 5 508 3.2E-158 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Trebr_1103 36600551d26feb699b3acb27307c1930 511 SUPERFAMILY SSF55931 7 326 4.25E-94 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Trebr_1103 36600551d26feb699b3acb27307c1930 511 SMART SM00845 361 508 9.8E-74 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Trebr_1103 36600551d26feb699b3acb27307c1930 511 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 5 509 34.48 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 Gene3D G3DSA:1.10.720.90 2 55 3.0E-17 T 13-10-2018 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 Pfam PF00453 Ribosomal protein L20 3 108 7.3E-43 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 25.965 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 SUPERFAMILY SSF74731 3 117 2.49E-43 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 4.8E-48 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 Gene3D G3DSA:1.10.1900.20 56 118 1.3E-28 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 5.2E-35 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 5.2E-35 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 5.2E-35 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0938 90cf72ac616b3653c9e4de511e778bac 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 70 7.0E-16 T 13-10-2018 Trebr_0863 b2d4e29387a8fef6320d44008a6cc475 362 PIRSF PIRSF006468 13 362 4.4E-80 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 Trebr_0863 b2d4e29387a8fef6320d44008a6cc475 362 Gene3D G3DSA:3.20.10.10 191 360 1.9E-58 T 13-10-2018 Trebr_0863 b2d4e29387a8fef6320d44008a6cc475 362 SUPERFAMILY SSF56752 48 358 1.31E-76 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 Trebr_0863 b2d4e29387a8fef6320d44008a6cc475 362 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 52 360 5.1E-79 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 Trebr_0863 b2d4e29387a8fef6320d44008a6cc475 362 Gene3D G3DSA:3.30.470.10 1 190 4.3E-30 T 13-10-2018 Trebr_0863 b2d4e29387a8fef6320d44008a6cc475 362 ProSitePatterns PS00770 Aminotransferases class-IV signature. 242 272 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 Trebr_0863 b2d4e29387a8fef6320d44008a6cc475 362 Pfam PF01063 Amino-transferase class IV 70 318 2.8E-35 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 Trebr_1684 ef2f02d2150ced244fd1f7e8dc559077 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 8.9E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1684 ef2f02d2150ced244fd1f7e8dc559077 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 8.9E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1684 ef2f02d2150ced244fd1f7e8dc559077 198 Gene3D G3DSA:1.10.10.60 1 51 2.2E-17 T 13-10-2018 Trebr_1684 ef2f02d2150ced244fd1f7e8dc559077 198 SUPERFAMILY SSF46689 4 78 5.13E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1684 ef2f02d2150ced244fd1f7e8dc559077 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 3.0E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1684 ef2f02d2150ced244fd1f7e8dc559077 198 Gene3D G3DSA:1.10.357.10 52 197 1.0E-9 T 13-10-2018 Trebr_0390 ff713b843ceb6a213d3bf868fcf28981 328 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 265 278 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Trebr_0390 ff713b843ceb6a213d3bf868fcf28981 328 Gene3D G3DSA:3.40.1190.20 2 326 2.4E-60 T 13-10-2018 IPR029056 Ribokinase-like Trebr_0390 ff713b843ceb6a213d3bf868fcf28981 328 SUPERFAMILY SSF53613 1 305 1.56E-47 T 13-10-2018 IPR029056 Ribokinase-like Trebr_0390 ff713b843ceb6a213d3bf868fcf28981 328 Pfam PF00294 pfkB family carbohydrate kinase 4 308 7.7E-40 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB Trebr_0390 ff713b843ceb6a213d3bf868fcf28981 328 PRINTS PR00990 Ribokinase signature 186 201 7.4E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0390 ff713b843ceb6a213d3bf868fcf28981 328 PRINTS PR00990 Ribokinase signature 34 53 7.4E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0390 ff713b843ceb6a213d3bf868fcf28981 328 PRINTS PR00990 Ribokinase signature 235 246 7.4E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_1987 ea015647408567a38080bdd468bb2728 188 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 11 186 5.1E-34 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Trebr_1987 ea015647408567a38080bdd468bb2728 188 SUPERFAMILY SSF53323 1 187 2.62E-36 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Trebr_1987 ea015647408567a38080bdd468bb2728 188 Gene3D G3DSA:3.40.920.10 1 188 3.9E-42 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 SUPERFAMILY SSF53927 217 569 3.31E-95 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 SMART SM00851 14 128 9.8E-54 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 Gene3D G3DSA:3.40.50.1380 1 193 2.2E-80 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 SUPERFAMILY SSF52335 2 190 1.57E-61 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 Gene3D G3DSA:3.40.140.20 215 286 1.1E-14 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 Gene3D G3DSA:3.40.140.20 295 415 1.1E-28 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 2 569 38.307 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 SMART SM00798 133 498 1.9E-127 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 Pfam PF02142 MGS-like domain 15 128 2.2E-22 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 Gene3D G3DSA:3.40.140.20 429 569 1.2E-52 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 PIRSF PIRSF000414 1 283 2.7E-89 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 PIRSF PIRSF000414 303 569 5.1E-88 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 280 3.3E-36 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0549 a6d02921395accfde6385eaf2539ab60 569 Pfam PF01808 AICARFT/IMPCHase bienzyme 319 497 6.3E-55 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Gene3D G3DSA:2.120.10.90 500 809 3.5E-107 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Gene3D G3DSA:3.90.199.10 36 490 5.6E-199 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Gene3D G3DSA:1.10.268.10 373 461 5.6E-199 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 614 657 7.9E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 763 809 1.4E-7 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 715 756 1.1E-6 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 662 708 4.4E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 509 554 1.5E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 558 606 4.8E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 13 810 0.0 T 13-10-2018 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Gene3D G3DSA:3.30.1360.40 240 336 5.6E-199 T 13-10-2018 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 473 1.3E-150 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 SUPERFAMILY SSF56719 34 491 6.67E-166 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 2 811 23.214 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 SUPERFAMILY SSF101904 503 816 1.05E-93 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Trebr_2586 8edd95c380c1a86b83771e7a637ec3b3 817 SMART SM00434 15 468 6.8E-260 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_1076 79ec390a0e30681a994e500667b66d09 422 Gene3D G3DSA:2.60.120.10 310 412 5.4E-20 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_1076 79ec390a0e30681a994e500667b66d09 422 Pfam PF03631 Virulence factor BrkB 24 275 2.5E-26 T 13-10-2018 IPR017039 Virulence factor BrkB Trebr_1076 79ec390a0e30681a994e500667b66d09 422 SUPERFAMILY SSF51206 315 419 1.03E-19 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like Trebr_1076 79ec390a0e30681a994e500667b66d09 422 SMART SM00100 303 412 4.6E-8 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_1076 79ec390a0e30681a994e500667b66d09 422 Pfam PF00027 Cyclic nucleotide-binding domain 320 400 1.2E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_1420 57069580a87dad60caeeaac0226c8335 288 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 230 42.77 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 PRINTS PR00395 Ribosomal protein S2 signature 6 24 3.7E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 PRINTS PR00395 Ribosomal protein S2 signature 196 210 3.7E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 PRINTS PR00395 Ribosomal protein S2 signature 87 104 3.7E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 PRINTS PR00395 Ribosomal protein S2 signature 158 175 3.7E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 PRINTS PR00395 Ribosomal protein S2 signature 37 46 3.7E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 PRINTS PR00395 Ribosomal protein S2 signature 175 186 3.7E-39 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 Gene3D G3DSA:1.10.287.610 100 151 1.6E-21 T 13-10-2018 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 SUPERFAMILY SSF52313 6 227 6.28E-94 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily Trebr_1420 57069580a87dad60caeeaac0226c8335 288 Pfam PF00318 Ribosomal protein S2 9 223 2.3E-97 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1420 57069580a87dad60caeeaac0226c8335 288 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 2.8E-111 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_R0022 6550bbf2574ca3abe385dec98097fce0 179 SUPERFAMILY SSF57802 137 178 3.81E-11 T 13-10-2018 Trebr_R0022 6550bbf2574ca3abe385dec98097fce0 179 Gene3D G3DSA:1.20.1260.10 1 134 8.4E-53 T 13-10-2018 IPR012347 Ferritin-like Trebr_R0022 6550bbf2574ca3abe385dec98097fce0 179 Pfam PF02915 Rubrerythrin 12 127 1.6E-24 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Trebr_R0022 6550bbf2574ca3abe385dec98097fce0 179 Gene3D G3DSA:2.20.28.10 135 179 1.8E-18 T 13-10-2018 Trebr_R0022 6550bbf2574ca3abe385dec98097fce0 179 SUPERFAMILY SSF47240 4 133 1.33E-40 T 13-10-2018 IPR009078 Ferritin-like superfamily Trebr_0699 560d195abe182aa7238544008c1f374c 310 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 5.4E-12 T 13-10-2018 Trebr_0699 560d195abe182aa7238544008c1f374c 310 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 302 2.1E-24 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_2347 092e19799d985b482dca5bff08639d81 465 Pfam PF01554 MatE 27 191 2.5E-29 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0294 3518b26fc50bcaa2cc01b34905a4538c 307 Pfam PF00535 Glycosyl transferase family 2 5 132 1.6E-24 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0294 3518b26fc50bcaa2cc01b34905a4538c 307 SUPERFAMILY SSF53448 2 249 1.9E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0294 3518b26fc50bcaa2cc01b34905a4538c 307 Gene3D G3DSA:3.90.550.10 1 218 1.3E-28 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0443 fdf68cc7064b40b9946ad2dda8aaeaaa 578 Gene3D G3DSA:3.40.50.970 1 173 1.2E-37 T 13-10-2018 Trebr_0443 fdf68cc7064b40b9946ad2dda8aaeaaa 578 SUPERFAMILY SSF52518 12 176 8.83E-23 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0443 fdf68cc7064b40b9946ad2dda8aaeaaa 578 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 174 2.7E-22 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Trebr_0443 fdf68cc7064b40b9946ad2dda8aaeaaa 578 Gene3D G3DSA:3.40.50.1220 200 344 5.5E-8 T 13-10-2018 Trebr_0443 fdf68cc7064b40b9946ad2dda8aaeaaa 578 SUPERFAMILY SSF52518 346 536 1.37E-17 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0443 fdf68cc7064b40b9946ad2dda8aaeaaa 578 PIRSF PIRSF004983 1 552 1.1E-79 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 Trebr_0443 fdf68cc7064b40b9946ad2dda8aaeaaa 578 Gene3D G3DSA:3.40.50.970 351 547 3.1E-37 T 13-10-2018 Trebr_0044 1ad7f901ddb20adaa4f0fd1125db8a39 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 295 2.4E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0044 1ad7f901ddb20adaa4f0fd1125db8a39 299 Gene3D G3DSA:1.10.3720.10 54 298 1.9E-68 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0044 1ad7f901ddb20adaa4f0fd1125db8a39 299 SUPERFAMILY SSF161098 59 286 8.9E-59 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 Hamap MF_01884 Transcription termination factor Rho [rho]. 157 576 224.247 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 314 518 6.2E-22 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 SUPERFAMILY SSF50249 207 281 5.48E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 Gene3D G3DSA:2.40.50.140 205 281 2.5E-33 T 13-10-2018 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 Pfam PF07498 Rho termination factor, N-terminal domain 161 205 7.0E-12 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 Gene3D G3DSA:1.10.720.10 156 204 4.8E-11 T 13-10-2018 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 Gene3D G3DSA:3.40.50.300 288 572 1.6E-128 T 13-10-2018 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 SMART SM00382 325 510 1.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 TIGRFAM TIGR00767 rho: transcription termination factor Rho 158 572 7.1E-218 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 SMART SM00357 210 276 2.2E-16 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 SUPERFAMILY SSF52540 248 526 2.08E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 Pfam PF07497 Rho termination factor, RNA-binding domain 210 281 1.3E-29 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 SUPERFAMILY SSF68912 158 205 2.35E-6 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily Trebr_2106 c6ca71e2e6e064b4902c50cfedce4b1b 577 SMART SM00959 161 205 1.0E-10 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 Gene3D G3DSA:3.90.226.10 19 209 5.7E-61 T 13-10-2018 Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 PRINTS PR00127 Clp protease catalytic subunit P signature 34 49 5.3E-30 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 PRINTS PR00127 Clp protease catalytic subunit P signature 125 144 5.3E-30 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 PRINTS PR00127 Clp protease catalytic subunit P signature 182 201 5.3E-30 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 PRINTS PR00127 Clp protease catalytic subunit P signature 73 93 5.3E-30 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 PRINTS PR00127 Clp protease catalytic subunit P signature 104 121 5.3E-30 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 207 34.125 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 SUPERFAMILY SSF52096 37 209 3.84E-55 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 126 139 - T 13-10-2018 IPR033135 ClpP, histidine active site Trebr_0606 7a8609dc8d1fa9057fb649dab559648d 211 Pfam PF00574 Clp protease 32 206 6.6E-65 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 4.6E-27 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 467 494 4.6E-27 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 544 573 4.6E-27 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 496 525 4.6E-27 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 437 594 2.3E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 SUPERFAMILY SSF58104 351 613 2.75E-57 T 13-10-2018 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 Gene3D G3DSA:3.30.450.20 160 291 1.2E-17 T 13-10-2018 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 Pfam PF02743 Cache domain 40 276 2.4E-18 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 Gene3D G3DSA:1.10.287.950 315 611 7.5E-66 T 13-10-2018 Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 SUPERFAMILY SSF103190 106 185 2.01E-5 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Trebr_1288 c0493f53daa9e28d770e1c04cd6f5a51 684 SMART SM00283 376 609 1.1E-56 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 Pfam PF13522 Glutamine amidotransferase domain 61 188 4.4E-21 T 13-10-2018 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 Gene3D G3DSA:3.40.50.10490 450 597 1.2E-139 T 13-10-2018 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 Gene3D G3DSA:3.40.50.10490 246 611 1.2E-139 T 13-10-2018 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 612 2.4E-245 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 Pfam PF01380 SIS domain 295 420 4.3E-34 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 Pfam PF01380 SIS domain 467 593 4.6E-21 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 Gene3D G3DSA:3.60.20.10 2 238 4.1E-76 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 SUPERFAMILY SSF53697 244 612 8.07E-109 T 13-10-2018 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 612 40.263 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Trebr_0679 bc7a2ec1886eb82927299c6693def2b6 612 SUPERFAMILY SSF56235 2 235 1.37E-73 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_1533 66e369b1b7d8be8d001c39baf2d33750 345 Gene3D G3DSA:3.60.21.10 20 320 4.4E-11 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like Trebr_1533 66e369b1b7d8be8d001c39baf2d33750 345 SUPERFAMILY SSF56300 68 319 6.9E-11 T 13-10-2018 Trebr_1533 66e369b1b7d8be8d001c39baf2d33750 345 ProSitePatterns PS00125 Serine/threonine specific protein phosphatases signature. 179 184 - T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 SMART SM00864 16 208 5.9E-112 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 Pfam PF12327 FtsZ family, C-terminal domain 225 319 1.5E-27 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 ProSitePatterns PS01135 FtsZ protein signature 2. 100 121 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 SUPERFAMILY SSF55307 207 322 7.33E-39 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 SUPERFAMILY SSF52490 16 211 2.09E-69 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 PRINTS PR00423 Cell division protein FtsZ signature 129 150 5.5E-48 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 PRINTS PR00423 Cell division protein FtsZ signature 101 121 5.5E-48 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 PRINTS PR00423 Cell division protein FtsZ signature 215 236 5.5E-48 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 PRINTS PR00423 Cell division protein FtsZ signature 192 214 5.5E-48 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 Gene3D G3DSA:3.30.1330.20 224 337 1.1E-36 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 SMART SM00865 210 328 1.9E-44 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 Gene3D G3DSA:3.40.50.1440 8 223 1.1E-79 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 17 176 2.5E-43 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 342 2.2E-128 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 358 37.196 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Trebr_0953 26731c7183e2bfd1fd9696d91d4d4a1f 439 ProSitePatterns PS01134 FtsZ protein signature 1. 47 81 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Trebr_2354 c8d5eb78fec6e298e0dea6510b9690fe 399 SUPERFAMILY SSF102114 5 338 2.35E-42 T 13-10-2018 Trebr_2354 c8d5eb78fec6e298e0dea6510b9690fe 399 Gene3D G3DSA:3.20.20.70 1 398 2.7E-106 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_2354 c8d5eb78fec6e298e0dea6510b9690fe 399 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 269 351 1.8E-15 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain Trebr_2354 c8d5eb78fec6e298e0dea6510b9690fe 399 Pfam PF04055 Radical SAM superfamily 11 180 2.4E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0746 1ad7b56b6a5b9a76975d88b6b02a5815 251 SUPERFAMILY SSF53448 1 232 1.69E-49 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0746 1ad7b56b6a5b9a76975d88b6b02a5815 251 Pfam PF00535 Glycosyl transferase family 2 3 171 8.7E-20 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0746 1ad7b56b6a5b9a76975d88b6b02a5815 251 Gene3D G3DSA:3.90.550.10 1 242 1.8E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 Gene3D G3DSA:3.20.20.300 468 776 1.2E-82 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 20 275 1.2E-37 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 Gene3D G3DSA:2.60.40.10 277 403 2.4E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 493 766 3.2E-62 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 686 703 - T 13-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 SUPERFAMILY SSF51445 499 791 2.63E-71 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 PRINTS PR00133 Glycosyl hydrolase family 3 signature 585 601 1.1E-26 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 PRINTS PR00133 Glycosyl hydrolase family 3 signature 686 704 1.1E-26 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 PRINTS PR00133 Glycosyl hydrolase family 3 signature 513 529 1.1E-26 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 PRINTS PR00133 Glycosyl hydrolase family 3 signature 539 558 1.1E-26 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 PRINTS PR00133 Glycosyl hydrolase family 3 signature 616 632 1.1E-26 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 SMART SM01217 308 384 1.1E-20 T 13-10-2018 IPR026891 Fibronectin type III-like domain Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 SUPERFAMILY SSF52279 20 278 8.76E-35 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 Gene3D G3DSA:3.40.50.1700 4 276 6.2E-73 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 Trebr_2319 d91d3668bde777acd8acebfe584ae53b 927 Pfam PF14310 Fibronectin type III-like domain 308 383 4.4E-17 T 13-10-2018 IPR026891 Fibronectin type III-like domain Trebr_0698 a098d219150dcc00a480e70839f860d5 143 Gene3D G3DSA:3.10.129.10 2 142 6.3E-45 T 13-10-2018 Trebr_0698 a098d219150dcc00a480e70839f860d5 143 SUPERFAMILY SSF54637 5 139 3.65E-39 T 13-10-2018 IPR029069 HotDog domain superfamily Trebr_0698 a098d219150dcc00a480e70839f860d5 143 Pfam PF07977 FabA-like domain 11 133 2.2E-24 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Trebr_0842 8d3254eb607ddba709c8d56f20573f78 343 Gene3D G3DSA:3.20.20.70 77 337 7.1E-96 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0842 8d3254eb607ddba709c8d56f20573f78 343 Gene3D G3DSA:3.30.70.1140 1 76 2.3E-27 T 13-10-2018 Trebr_0842 8d3254eb607ddba709c8d56f20573f78 343 Pfam PF00793 DAHP synthetase I family 93 333 3.3E-73 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Trebr_0842 8d3254eb607ddba709c8d56f20573f78 343 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 74 333 5.5E-115 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Trebr_0842 8d3254eb607ddba709c8d56f20573f78 343 SUPERFAMILY SSF51569 1 341 2.2E-106 T 13-10-2018 Trebr_2067 f814c5e331ffb8cfe0a2592d580fdd51 419 SUPERFAMILY SSF48208 8 416 4.23E-75 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_2067 f814c5e331ffb8cfe0a2592d580fdd51 419 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 34 404 2.8E-37 T 13-10-2018 Trebr_2067 f814c5e331ffb8cfe0a2592d580fdd51 419 Gene3D G3DSA:1.50.10.10 1 416 3.8E-112 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_1926 3987126fe7832824b18d9f4c0636aad3 330 Gene3D G3DSA:3.40.50.2300 60 155 2.8E-10 T 13-10-2018 Trebr_1926 3987126fe7832824b18d9f4c0636aad3 330 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 61 270 1.1E-15 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain Trebr_1926 3987126fe7832824b18d9f4c0636aad3 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 2.4E-14 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_1926 3987126fe7832824b18d9f4c0636aad3 330 SUPERFAMILY SSF53822 60 330 2.36E-39 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_1926 3987126fe7832824b18d9f4c0636aad3 330 Gene3D G3DSA:3.40.50.2300 159 330 8.1E-31 T 13-10-2018 Trebr_1926 3987126fe7832824b18d9f4c0636aad3 330 SMART SM00354 2 72 4.5E-23 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_1926 3987126fe7832824b18d9f4c0636aad3 330 SUPERFAMILY SSF47413 2 60 7.32E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1926 3987126fe7832824b18d9f4c0636aad3 330 Gene3D G3DSA:1.10.260.40 1 59 4.1E-19 T 13-10-2018 Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 Pfam PF02055 Glycosyl hydrolase family 30 TIM-barrel domain 48 386 3.4E-61 T 13-10-2018 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 390 450 6.1E-12 T 13-10-2018 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 SUPERFAMILY SSF51445 48 388 2.43E-71 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 Gene3D G3DSA:3.20.20.80 46 390 2.5E-138 T 13-10-2018 Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 PRINTS PR00843 Glycosyl hydrolase family 30 signature 74 100 2.7E-14 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 PRINTS PR00843 Glycosyl hydrolase family 30 signature 241 263 2.7E-14 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 PRINTS PR00843 Glycosyl hydrolase family 30 signature 172 189 2.7E-14 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 PRINTS PR00843 Glycosyl hydrolase family 30 signature 38 58 2.7E-14 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_0326 d7d25d7c3209780ab213b60c3e0c9d69 453 Gene3D G3DSA:2.60.40.1180 25 451 2.5E-138 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta Trebr_0301 3c0ff1cd72c4ae26306f99a95b664588 901 SUPERFAMILY SSF53649 750 852 1.59E-6 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Trebr_0301 3c0ff1cd72c4ae26306f99a95b664588 901 Pfam PF02096 60Kd inner membrane protein 32 219 4.0E-22 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Trebr_0033 f37f773394721872b6b3cde8cf29d459 291 SUPERFAMILY SSF48317 100 269 4.06E-25 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Trebr_0033 f37f773394721872b6b3cde8cf29d459 291 Gene3D G3DSA:1.20.144.10 177 275 1.2E-17 T 13-10-2018 Trebr_0033 f37f773394721872b6b3cde8cf29d459 291 Pfam PF01569 PAP2 superfamily 147 265 6.3E-19 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Trebr_0033 f37f773394721872b6b3cde8cf29d459 291 SMART SM00014 142 264 6.5E-7 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Trebr_1378 61c68dc485556eed79f5bde80e4bc6a8 194 Pfam PF00037 4Fe-4S binding domain 134 148 1.4E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_1378 61c68dc485556eed79f5bde80e4bc6a8 194 Gene3D G3DSA:3.30.70.20 94 153 3.9E-12 T 13-10-2018 Trebr_1378 61c68dc485556eed79f5bde80e4bc6a8 194 SUPERFAMILY SSF54862 104 178 1.54E-11 T 13-10-2018 Trebr_1378 61c68dc485556eed79f5bde80e4bc6a8 194 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 134 145 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_1276 8634d88cf7f77ea8bdf503b7c71afe42 316 Gene3D G3DSA:3.30.420.40 86 199 1.3E-13 T 13-10-2018 Trebr_1276 8634d88cf7f77ea8bdf503b7c71afe42 316 SUPERFAMILY SSF53067 94 234 2.83E-15 T 13-10-2018 Trebr_1276 8634d88cf7f77ea8bdf503b7c71afe42 316 SUPERFAMILY SSF46785 15 78 1.1E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1276 8634d88cf7f77ea8bdf503b7c71afe42 316 Gene3D G3DSA:3.30.420.40 200 279 4.8E-6 T 13-10-2018 Trebr_1276 8634d88cf7f77ea8bdf503b7c71afe42 316 Gene3D G3DSA:1.10.10.10 1 78 7.2E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1276 8634d88cf7f77ea8bdf503b7c71afe42 316 Pfam PF00480 ROK family 118 229 3.3E-15 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Gene3D G3DSA:3.30.565.10 496 682 4.8E-60 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SUPERFAMILY SSF47384 374 441 1.06E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Gene3D G3DSA:1.20.120.160 5 146 3.5E-37 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Gene3D G3DSA:2.30.30.40 683 809 4.9E-40 T 13-10-2018 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SMART SM01231 372 497 1.9E-13 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Pfam PF07194 P2 response regulator binding domain 214 288 8.7E-11 T 13-10-2018 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Pfam PF01584 CheW-like domain 687 814 2.2E-28 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SMART SM00260 675 813 5.2E-44 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Gene3D G3DSA:1.10.287.560 373 442 7.1E-6 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 373 497 1.5E-25 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 PRINTS PR00344 Bacterial sensor protein C-terminal signature 667 680 9.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 637 9.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 661 9.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 PRINTS PR00344 Bacterial sensor protein C-terminal signature 587 601 9.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SMART SM00073 9 106 3.2E-29 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 546 682 8.6E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Gene3D G3DSA:2.40.50.180 706 768 4.9E-40 T 13-10-2018 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 Pfam PF01627 Hpt domain 11 110 6.2E-18 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SMART SM00387 542 683 5.3E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SUPERFAMILY SSF47226 10 127 9.29E-30 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SUPERFAMILY SSF50341 682 813 1.2E-33 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SUPERFAMILY SSF55052 210 280 2.54E-11 T 13-10-2018 IPR035891 CheY-binding domain of CheA Trebr_0762 0e465853b14121a04b210b0b5c848dc6 832 SUPERFAMILY SSF55874 499 681 4.19E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 139 558 4.2E-131 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 Gene3D G3DSA:3.30.1360.200 275 383 5.8E-21 T 13-10-2018 Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 323 552 4.8E-71 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 Gene3D G3DSA:1.20.1640.10 384 569 6.7E-14 T 13-10-2018 Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 Pfam PF02355 Protein export membrane protein 393 553 1.0E-17 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 PRINTS PR00702 Acriflavin resistance protein family signature 461 485 2.1E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 PRINTS PR00702 Acriflavin resistance protein family signature 536 559 2.1E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 PRINTS PR00702 Acriflavin resistance protein family signature 408 431 2.1E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 Gene3D G3DSA:3.30.70.3400 139 237 4.7E-19 T 13-10-2018 Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 574 36.318 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Trebr_0830 8bdb4b2aaaa9592c4259aff3e27f11d9 578 SUPERFAMILY SSF82866 379 560 4.05E-38 T 13-10-2018 Trebr_2481 cda73a7175f4b7395532a7355aa5b4b5 402 Gene3D G3DSA:1.20.1250.20 2 185 1.1E-23 T 13-10-2018 Trebr_2481 cda73a7175f4b7395532a7355aa5b4b5 402 SUPERFAMILY SSF103473 4 392 1.31E-47 T 13-10-2018 IPR036259 MFS transporter superfamily Trebr_2481 cda73a7175f4b7395532a7355aa5b4b5 402 Pfam PF07690 Major Facilitator Superfamily 12 303 8.3E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Trebr_2481 cda73a7175f4b7395532a7355aa5b4b5 402 Gene3D G3DSA:1.20.1250.20 206 396 2.0E-26 T 13-10-2018 Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 142 563 1.6E-14 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 SUPERFAMILY SSF51905 138 566 3.3E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 Pfam PF00037 4Fe-4S binding domain 237 255 1.2E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 SUPERFAMILY SSF54862 588 651 9.99E-14 T 13-10-2018 Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 243 254 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 589 600 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 Gene3D G3DSA:3.30.70.20 583 651 1.8E-11 T 13-10-2018 Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 Gene3D G3DSA:3.30.70.3270 222 371 1.0E-12 T 13-10-2018 Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 Gene3D G3DSA:3.40.50.720 138 210 4.2E-10 T 13-10-2018 Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 631 642 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2034 5e7c24264695fc8fca43007a573caa7d 665 Pfam PF12838 4Fe-4S dicluster domain 589 645 9.3E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 SUPERFAMILY SSF55073 49 198 1.32E-9 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 Pfam PF13191 AAA ATPase domain 517 707 3.5E-18 T 13-10-2018 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 SMART SM00028 1016 1049 0.61 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 SMART SM00028 979 1012 10.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 SUPERFAMILY SSF48452 901 1045 1.04E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 Gene3D G3DSA:1.25.40.10 1158 1425 1.8E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 SUPERFAMILY SSF48452 1167 1330 7.71E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 Gene3D G3DSA:3.30.70.1230 321 508 7.9E-25 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 Gene3D G3DSA:3.40.50.300 509 719 8.5E-6 T 13-10-2018 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 421 483 4.3E-6 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 Gene3D G3DSA:1.25.40.10 936 1062 1.7E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 SUPERFAMILY SSF52540 514 787 5.45E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0354 3b548646173faf5d80ac6b35b8d73893 1473 SUPERFAMILY SSF55073 356 503 5.97E-20 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1487 a2cfbc0877ca3b57b95b26e1023841ac 347 Pfam PF01026 TatD related DNase 53 343 4.3E-46 T 13-10-2018 IPR001130 TatD family GO:0016788 Trebr_1487 a2cfbc0877ca3b57b95b26e1023841ac 347 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 214 224 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Trebr_1487 a2cfbc0877ca3b57b95b26e1023841ac 347 SUPERFAMILY SSF51556 52 345 1.22E-52 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_1487 a2cfbc0877ca3b57b95b26e1023841ac 347 Gene3D G3DSA:3.20.20.140 43 345 9.3E-56 T 13-10-2018 Trebr_1487 a2cfbc0877ca3b57b95b26e1023841ac 347 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 280 296 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Trebr_2575 61870388fe00c39c7da695e7f85878b0 165 SMART SM00530 9 64 1.2E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2575 61870388fe00c39c7da695e7f85878b0 165 SUPERFAMILY SSF47413 3 69 1.66E-20 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2575 61870388fe00c39c7da695e7f85878b0 165 Gene3D G3DSA:1.10.260.40 3 95 6.8E-23 T 13-10-2018 Trebr_2575 61870388fe00c39c7da695e7f85878b0 165 Pfam PF01381 Helix-turn-helix 10 64 1.9E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2045 cf610984705cb8e3c52e6c2b37121ef6 365 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 5 346 6.2E-147 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Trebr_2045 cf610984705cb8e3c52e6c2b37121ef6 365 SMART SM01329 4 360 3.3E-189 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Trebr_2045 cf610984705cb8e3c52e6c2b37121ef6 365 SUPERFAMILY SSF53659 4 364 3.42E-120 T 13-10-2018 Trebr_2045 cf610984705cb8e3c52e6c2b37121ef6 365 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 241 260 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Trebr_2045 cf610984705cb8e3c52e6c2b37121ef6 365 Gene3D G3DSA:3.40.718.10 1 365 3.3E-138 T 13-10-2018 Trebr_2045 cf610984705cb8e3c52e6c2b37121ef6 365 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 364 49.408 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Trebr_2045 cf610984705cb8e3c52e6c2b37121ef6 365 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 359 4.9E-129 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 SMART SM00292 569 646 4.7E-5 T 13-10-2018 IPR001357 BRCT domain Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Gene3D G3DSA:3.30.470.30 62 228 2.1E-50 T 13-10-2018 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 306 365 1.7E-17 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 PIRSF PIRSF001604 3 646 1.8E-153 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Gene3D G3DSA:3.30.1490.70 70 286 2.1E-50 T 13-10-2018 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Hamap MF_01588 DNA ligase [ligA]. 5 644 39.959 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 571 643 4.7E-9 T 13-10-2018 IPR001357 BRCT domain Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 SMART SM00532 4 420 3.1E-94 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Gene3D G3DSA:1.10.150.20 482 559 5.0E-8 T 13-10-2018 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Gene3D G3DSA:1.10.150.20 408 480 5.7E-7 T 13-10-2018 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Gene3D G3DSA:2.40.50.140 288 360 6.4E-18 T 13-10-2018 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Gene3D G3DSA:3.40.50.10190 560 645 5.8E-21 T 13-10-2018 IPR036420 BRCT domain superfamily Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 SUPERFAMILY SSF52113 569 645 1.66E-13 T 13-10-2018 IPR036420 BRCT domain superfamily Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Pfam PF14520 Helix-hairpin-helix domain 494 546 2.3E-5 T 13-10-2018 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 SUPERFAMILY SSF50249 289 366 1.88E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 SUPERFAMILY SSF56091 7 288 1.54E-63 T 13-10-2018 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 SUPERFAMILY SSF47781 379 549 1.07E-26 T 13-10-2018 IPR010994 RuvA domain 2-like Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 100 129 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 7 269 6.1E-46 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 12 639 2.1E-148 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Trebr_1211 4bccad75691fc790b0513f9e2fe37642 646 Gene3D G3DSA:1.10.287.610 5 61 1.2E-9 T 13-10-2018 Trebr_1240 a8978de70d6f788353d3fcad39bc5138 218 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 54 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Trebr_1240 a8978de70d6f788353d3fcad39bc5138 218 SUPERFAMILY SSF46689 4 72 1.03E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1240 a8978de70d6f788353d3fcad39bc5138 218 Gene3D G3DSA:1.10.357.10 1 200 1.4E-22 T 13-10-2018 Trebr_1240 a8978de70d6f788353d3fcad39bc5138 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 1.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1240 a8978de70d6f788353d3fcad39bc5138 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1240 a8978de70d6f788353d3fcad39bc5138 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1668 3c78b80330b3af126b700d566e8ef192 388 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 194 213 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Trebr_1668 3c78b80330b3af126b700d566e8ef192 388 Gene3D G3DSA:1.10.260.50 15 280 7.0E-136 T 13-10-2018 Trebr_1668 3c78b80330b3af126b700d566e8ef192 388 PIRSF PIRSF005572 1 382 1.5E-124 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Trebr_1668 3c78b80330b3af126b700d566e8ef192 388 Gene3D G3DSA:3.40.640.10 60 236 7.0E-136 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1668 3c78b80330b3af126b700d566e8ef192 388 Gene3D G3DSA:3.90.1150.10 4 370 7.0E-136 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1668 3c78b80330b3af126b700d566e8ef192 388 Pfam PF00266 Aminotransferase class-V 4 366 4.2E-76 T 13-10-2018 IPR000192 Aminotransferase class V domain Trebr_1668 3c78b80330b3af126b700d566e8ef192 388 SUPERFAMILY SSF53383 3 377 1.61E-102 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0610 777131ac7ffc2fb10e7e49c4ea3085e8 555 SUPERFAMILY SSF109755 353 551 6.8E-17 T 13-10-2018 Trebr_0610 777131ac7ffc2fb10e7e49c4ea3085e8 555 Gene3D G3DSA:1.20.58.220 349 553 4.5E-11 T 13-10-2018 IPR038078 PhoU-like domain superfamily Trebr_0610 777131ac7ffc2fb10e7e49c4ea3085e8 555 Pfam PF02690 Na+/Pi-cotransporter 19 158 2.2E-47 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Trebr_0610 777131ac7ffc2fb10e7e49c4ea3085e8 555 Pfam PF02690 Na+/Pi-cotransporter 176 259 1.9E-9 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Trebr_0610 777131ac7ffc2fb10e7e49c4ea3085e8 555 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 8 325 3.5E-92 T 13-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Trebr_2512 0d773fb4a1cb63a30c1055357b656cd9 58 Gene3D G3DSA:3.40.50.360 1 57 3.3E-9 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0359 29598adb9a0b139aa1773d62fa0dfc5f 334 SUPERFAMILY SSF53822 42 289 7.95E-13 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0359 29598adb9a0b139aa1773d62fa0dfc5f 334 Pfam PF04392 ABC transporter substrate binding protein 35 324 4.1E-75 T 13-10-2018 IPR007487 ABC transporter, substrate-binding protein Trebr_0359 29598adb9a0b139aa1773d62fa0dfc5f 334 Gene3D G3DSA:3.40.50.2300 145 319 1.2E-80 T 13-10-2018 Trebr_0359 29598adb9a0b139aa1773d62fa0dfc5f 334 Gene3D G3DSA:3.40.50.2300 46 294 1.2E-80 T 13-10-2018 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 SUPERFAMILY SSF53633 1 289 1.44E-76 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 Pfam PF00696 Amino acid kinase family 1 276 5.3E-54 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 SUPERFAMILY SSF55021 378 440 6.87E-12 T 13-10-2018 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 SUPERFAMILY SSF55021 298 382 4.12E-13 T 13-10-2018 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 1 440 1.9E-109 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 Gene3D G3DSA:3.30.70.260 308 374 9.4E-37 T 13-10-2018 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 Gene3D G3DSA:1.20.120.1320 40 129 6.0E-102 T 13-10-2018 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 PIRSF PIRSF000726 1 448 2.6E-108 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 Gene3D G3DSA:3.30.70.260 300 440 9.4E-37 T 13-10-2018 Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 Gene3D G3DSA:3.40.1160.10 3 287 6.0E-102 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_1690 5e31044d1bbdda4cda19720dfd6c682b 448 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Trebr_1551 04e8b24efb86bc6f21e74ba14091d4b9 227 SUPERFAMILY SSF53067 3 102 2.01E-19 T 13-10-2018 Trebr_1551 04e8b24efb86bc6f21e74ba14091d4b9 227 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 4 215 2.2E-37 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 Trebr_1551 04e8b24efb86bc6f21e74ba14091d4b9 227 Pfam PF00814 Glycoprotease family 35 134 1.6E-16 T 13-10-2018 IPR000905 Gcp-like domain Trebr_1551 04e8b24efb86bc6f21e74ba14091d4b9 227 Gene3D G3DSA:3.30.420.40 4 217 1.2E-37 T 13-10-2018 Trebr_1551 04e8b24efb86bc6f21e74ba14091d4b9 227 SUPERFAMILY SSF53067 107 202 1.65E-6 T 13-10-2018 Trebr_1551 04e8b24efb86bc6f21e74ba14091d4b9 227 Gene3D G3DSA:3.30.420.40 94 183 1.2E-37 T 13-10-2018 Trebr_1220 91cb19842c692aaaa82a23f598b3af34 142 Pfam PF00258 Flavodoxin 5 130 5.4E-17 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Trebr_1220 91cb19842c692aaaa82a23f598b3af34 142 TIGRFAM TIGR01753 flav_short: flavodoxin 4 137 6.8E-42 T 13-10-2018 IPR010087 Flavodoxin, short chain GO:0010181 Trebr_1220 91cb19842c692aaaa82a23f598b3af34 142 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Trebr_1220 91cb19842c692aaaa82a23f598b3af34 142 Gene3D G3DSA:3.40.50.360 4 140 5.9E-36 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_1220 91cb19842c692aaaa82a23f598b3af34 142 SUPERFAMILY SSF52218 2 137 7.73E-33 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 482 496 - T 13-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Pfam PF16353 Domain of unknown function(DUF4981) 680 765 1.4E-18 T 13-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 PRINTS PR00132 Glycosyl hydrolase family 2 signature 482 497 1.8E-14 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 PRINTS PR00132 Glycosyl hydrolase family 2 signature 570 585 1.8E-14 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 PRINTS PR00132 Glycosyl hydrolase family 2 signature 146 161 1.8E-14 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 372 667 1.3E-97 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 SUPERFAMILY SSF49303 660 770 7.91E-20 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 SUPERFAMILY SSF74650 783 1053 5.02E-52 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 57 218 2.1E-34 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 SUPERFAMILY SSF51445 372 663 7.51E-84 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Gene3D G3DSA:2.60.40.10 231 370 3.0E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 SUPERFAMILY SSF49785 8 219 3.12E-53 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Gene3D G3DSA:2.60.120.260 6 220 3.1E-66 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Pfam PF00703 Glycosyl hydrolases family 2 313 370 2.7E-6 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Pfam PF02929 Beta galactosidase small chain 787 1052 5.0E-50 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Gene3D G3DSA:2.60.40.10 676 770 1.7E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 SUPERFAMILY SSF49303 322 370 7.77E-8 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Gene3D G3DSA:2.70.98.10 771 1055 2.8E-59 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 Gene3D G3DSA:3.20.20.80 371 663 1.8E-107 T 13-10-2018 Trebr_0119 ed4dfea1f524f52b609162836d4ea9a5 1055 SMART SM01038 770 1054 3.8E-43 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 Trebr_1407 550c8e08a73c626bb79f45d49c6b8d2c 231 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 25 225 3.2E-19 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1407 550c8e08a73c626bb79f45d49c6b8d2c 231 Pfam PF00717 Peptidase S24-like 47 78 1.5E-4 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Trebr_1407 550c8e08a73c626bb79f45d49c6b8d2c 231 SUPERFAMILY SSF51306 40 230 4.71E-27 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Trebr_1407 550c8e08a73c626bb79f45d49c6b8d2c 231 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 185 204 1.7E-11 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1407 550c8e08a73c626bb79f45d49c6b8d2c 231 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 40 56 1.7E-11 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1407 550c8e08a73c626bb79f45d49c6b8d2c 231 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 119 131 1.7E-11 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1407 550c8e08a73c626bb79f45d49c6b8d2c 231 Gene3D G3DSA:2.10.109.10 104 231 5.8E-21 T 13-10-2018 Trebr_1545 5a12cde67f5cae358638abda600314e7 285 Gene3D G3DSA:1.20.1330.10 48 235 5.0E-58 T 13-10-2018 Trebr_1545 5a12cde67f5cae358638abda600314e7 285 PRINTS PR00207 Flagellin signature 109 132 2.5E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_1545 5a12cde67f5cae358638abda600314e7 285 PRINTS PR00207 Flagellin signature 35 52 2.5E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_1545 5a12cde67f5cae358638abda600314e7 285 PRINTS PR00207 Flagellin signature 74 93 2.5E-25 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_1545 5a12cde67f5cae358638abda600314e7 285 Gene3D G3DSA:1.10.8.410 236 285 1.5E-26 T 13-10-2018 Trebr_1545 5a12cde67f5cae358638abda600314e7 285 SUPERFAMILY SSF64518 1 284 3.66E-84 T 13-10-2018 Trebr_1545 5a12cde67f5cae358638abda600314e7 285 Pfam PF00700 Bacterial flagellin C-terminal helical region 200 284 6.0E-26 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Trebr_1545 5a12cde67f5cae358638abda600314e7 285 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 138 9.7E-40 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Trebr_0865 45360f0d681dbf8893d39d479c8861c2 469 Gene3D G3DSA:3.30.1330.60 310 454 4.9E-31 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_0865 45360f0d681dbf8893d39d479c8861c2 469 SUPERFAMILY SSF103088 338 447 2.09E-26 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_0865 45360f0d681dbf8893d39d479c8861c2 469 Pfam PF00691 OmpA family 342 439 1.5E-16 T 13-10-2018 IPR006665 OmpA-like domain Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 Pfam PF00072 Response regulator receiver domain 4 117 1.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 SMART SM00342 393 476 5.8E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 Gene3D G3DSA:3.40.50.2300 1 139 9.4E-33 T 13-10-2018 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 SUPERFAMILY SSF46689 429 477 8.06E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 430 472 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 Gene3D G3DSA:1.10.10.60 426 482 2.0E-19 T 13-10-2018 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 460 476 2.5E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 445 460 2.5E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 SMART SM00448 2 116 2.5E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 SUPERFAMILY SSF46689 377 427 1.61E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 Gene3D G3DSA:1.10.10.60 375 425 1.7E-13 T 13-10-2018 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 Pfam PF12833 Helix-turn-helix domain 400 477 5.6E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_2482 2eb01090ea56e0e3b0d2541b561f9ff4 487 SUPERFAMILY SSF52172 1 132 3.13E-32 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1944 1282460ee1b59ada8562083602e42210 530 Gene3D G3DSA:3.40.190.10 52 278 2.0E-94 T 13-10-2018 Trebr_1944 1282460ee1b59ada8562083602e42210 530 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 436 8.2E-56 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain Trebr_1944 1282460ee1b59ada8562083602e42210 530 Gene3D G3DSA:3.90.76.10 71 194 2.0E-94 T 13-10-2018 Trebr_1944 1282460ee1b59ada8562083602e42210 530 Gene3D G3DSA:3.10.105.10 279 486 2.0E-94 T 13-10-2018 Trebr_1944 1282460ee1b59ada8562083602e42210 530 PIRSF PIRSF002741 2 511 1.2E-67 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Trebr_1944 1282460ee1b59ada8562083602e42210 530 SUPERFAMILY SSF53850 51 513 3.26E-84 T 13-10-2018 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 SUPERFAMILY SSF50447 206 302 2.02E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 Pfam PF03144 Elongation factor Tu domain 2 226 294 4.0E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 SUPERFAMILY SSF52540 9 227 2.44E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 Pfam PF00009 Elongation factor Tu GTP binding domain 10 202 1.2E-57 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 150 4.9E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.6E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.6E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.6E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.6E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.6E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 Gene3D G3DSA:2.40.30.10 302 394 2.7E-38 T 13-10-2018 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 SUPERFAMILY SSF50465 299 394 2.53E-34 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 8.0E-208 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 395 57.839 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 Pfam PF03143 Elongation factor Tu C-terminal domain 299 393 1.8E-30 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 Gene3D G3DSA:3.40.50.300 1 204 9.2E-65 T 13-10-2018 Trebr_2297 0de09e32c3b768e3e73e12ea5166caf1 395 Gene3D G3DSA:2.40.30.10 207 301 1.3E-37 T 13-10-2018 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 SMART SM00738 2 117 4.5E-32 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 ProSitePatterns PS01014 Transcription termination factor nusG signature. 168 177 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site Trebr_2306 d3b278893b7c82287a691c17909a7056 185 Gene3D G3DSA:3.30.70.940 1 124 2.6E-31 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 SUPERFAMILY SSF82679 3 117 5.23E-24 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 PRINTS PR00338 Transcription termination factor NUSG signature 161 177 3.1E-17 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 PRINTS PR00338 Transcription termination factor NUSG signature 58 70 3.1E-17 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 PRINTS PR00338 Transcription termination factor NUSG signature 143 158 3.1E-17 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 185 20.923 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 Pfam PF00467 KOW motif 134 164 1.4E-5 T 13-10-2018 IPR005824 KOW Trebr_2306 d3b278893b7c82287a691c17909a7056 185 Gene3D G3DSA:2.30.30.30 125 185 2.8E-23 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 Pfam PF02357 Transcription termination factor nusG 3 113 2.0E-19 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 185 2.0E-56 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Trebr_2306 d3b278893b7c82287a691c17909a7056 185 SMART SM00739 131 158 2.1E-4 T 13-10-2018 IPR005824 KOW Trebr_2306 d3b278893b7c82287a691c17909a7056 185 SUPERFAMILY SSF50104 130 185 7.02E-18 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 Pfam PF00809 Pterin binding enzyme 356 578 1.2E-31 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 SUPERFAMILY SSF47644 658 733 8.37E-14 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 Pfam PF02574 Homocysteine S-methyltransferase 16 322 6.9E-55 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 SMART SM01018 655 736 9.1E-20 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 Gene3D G3DSA:3.20.20.330 1 333 8.5E-79 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 Pfam PF02310 B12 binding domain 744 854 4.4E-21 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 SUPERFAMILY SSF51717 353 609 4.84E-80 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 SUPERFAMILY SSF82282 4 395 7.72E-88 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 Gene3D G3DSA:3.20.20.20 351 615 6.2E-90 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 SUPERFAMILY SSF52242 723 861 7.33E-36 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 Gene3D G3DSA:3.40.50.280 741 862 2.5E-41 T 13-10-2018 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 Pfam PF02607 B12 binding domain 658 728 1.3E-15 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_2466 70c4a9b64e8088ada7ce1a90dbbfc1f5 862 Gene3D G3DSA:1.10.1240.10 643 737 9.8E-17 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_1799 348fc4257f6b9e4fc832155d1af4ddd9 408 Gene3D G3DSA:3.40.50.2000 212 395 2.2E-20 T 13-10-2018 Trebr_1799 348fc4257f6b9e4fc832155d1af4ddd9 408 SUPERFAMILY SSF53756 19 408 1.31E-36 T 13-10-2018 Trebr_1799 348fc4257f6b9e4fc832155d1af4ddd9 408 Pfam PF13579 Glycosyl transferase 4-like domain 18 200 2.2E-6 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_1799 348fc4257f6b9e4fc832155d1af4ddd9 408 Gene3D G3DSA:3.40.50.2000 1 211 9.1E-15 T 13-10-2018 Trebr_1799 348fc4257f6b9e4fc832155d1af4ddd9 408 Pfam PF00534 Glycosyl transferases group 1 220 388 1.6E-13 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_2566 ae9d7f22c07f47da67c697587757a017 211 Pfam PF06445 GyrI-like small molecule binding domain 20 186 1.2E-14 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain Trebr_2566 ae9d7f22c07f47da67c697587757a017 211 SUPERFAMILY SSF55136 118 179 6.98E-6 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_2566 ae9d7f22c07f47da67c697587757a017 211 Gene3D G3DSA:3.20.80.10 2 193 1.1E-47 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Gene3D G3DSA:2.60.40.1080 365 439 3.5E-12 T 13-10-2018 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 SUPERFAMILY SSF49373 379 437 9.42E-13 T 13-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 SUPERFAMILY SSF74650 820 1103 4.19E-77 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 SMART SM00635 359 435 2.5E-6 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Gene3D G3DSA:2.60.220.10 1095 1217 1.1E-22 T 13-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Gene3D G3DSA:1.50.10.100 443 816 3.8E-119 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 SUPERFAMILY SSF49863 1096 1216 8.04E-20 T 13-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Gene3D G3DSA:2.60.120.260 26 190 5.7E-17 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Gene3D G3DSA:2.60.120.260 197 364 1.6E-31 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Pfam PF02368 Bacterial Ig-like domain (group 2) 388 430 7.8E-8 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 SUPERFAMILY SSF48230 444 809 1.33E-88 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 823 1081 8.0E-78 T 13-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 1098 1170 7.9E-17 T 13-10-2018 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 453 774 1.6E-92 T 13-10-2018 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical Trebr_1554 e9cf2c28ef047a51eba971704afd33f8 1219 Gene3D G3DSA:2.70.98.10 818 1093 3.8E-95 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 SUPERFAMILY SSF53223 5 195 4.16E-75 T 13-10-2018 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 121 134 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 SMART SM00839 203 446 7.6E-102 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 56 184 5.3E-52 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 PIRSF PIRSF000185 21 448 2.1E-113 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 Gene3D G3DSA:3.40.50.10860 54 189 9.3E-177 T 13-10-2018 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 Gene3D G3DSA:1.10.285.10 385 448 3.3E-11 T 13-10-2018 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 201 446 2.2E-88 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 SUPERFAMILY SSF51735 201 447 7.35E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 Gene3D G3DSA:1.10.285.10 5 384 9.3E-177 T 13-10-2018 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 113 127 2.5E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 2.5E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 234 254 2.5E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 192 214 2.5E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Trebr_0513 66ada39ae24e29cd84384c74c93cea53 448 Gene3D G3DSA:3.40.50.720 208 373 9.3E-177 T 13-10-2018 Trebr_0898 689779dc252702b9fecc1746c7551731 598 SMART SM00836 476 598 1.6E-40 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Trebr_0898 689779dc252702b9fecc1746c7551731 598 Pfam PF05746 DALR anticodon binding domain 476 598 1.0E-28 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Trebr_0898 689779dc252702b9fecc1746c7551731 598 SUPERFAMILY SSF52374 127 469 9.07E-79 T 13-10-2018 Trebr_0898 689779dc252702b9fecc1746c7551731 598 Gene3D G3DSA:1.10.730.10 475 598 2.7E-34 T 13-10-2018 Trebr_0898 689779dc252702b9fecc1746c7551731 598 Gene3D G3DSA:3.40.50.620 130 474 6.2E-111 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0898 689779dc252702b9fecc1746c7551731 598 Pfam PF00750 tRNA synthetases class I (R) 129 461 2.7E-53 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 Trebr_0898 689779dc252702b9fecc1746c7551731 598 SMART SM01016 6 97 7.4E-7 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Trebr_0898 689779dc252702b9fecc1746c7551731 598 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 12 97 2.3E-8 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Trebr_0898 689779dc252702b9fecc1746c7551731 598 Hamap MF_00123 Arginine--tRNA ligase [argS]. 6 598 24.894 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Trebr_0898 689779dc252702b9fecc1746c7551731 598 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 36 598 1.5E-141 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Trebr_0898 689779dc252702b9fecc1746c7551731 598 SUPERFAMILY SSF55190 3 118 1.7E-13 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Trebr_0898 689779dc252702b9fecc1746c7551731 598 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 140 151 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0898 689779dc252702b9fecc1746c7551731 598 Gene3D G3DSA:3.30.1360.70 16 118 1.7E-12 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Trebr_0898 689779dc252702b9fecc1746c7551731 598 SUPERFAMILY SSF47323 471 598 7.85E-31 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0898 689779dc252702b9fecc1746c7551731 598 PRINTS PR01038 Arginyl-tRNA synthetase signature 132 147 1.6E-19 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Trebr_0898 689779dc252702b9fecc1746c7551731 598 PRINTS PR01038 Arginyl-tRNA synthetase signature 321 342 1.6E-19 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Trebr_0898 689779dc252702b9fecc1746c7551731 598 PRINTS PR01038 Arginyl-tRNA synthetase signature 147 163 1.6E-19 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Trebr_0898 689779dc252702b9fecc1746c7551731 598 PRINTS PR01038 Arginyl-tRNA synthetase signature 171 184 1.6E-19 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Trebr_0669 c6048c28fefeeb31cec309d9a1d75ac9 232 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 209 5.2E-19 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Trebr_0669 c6048c28fefeeb31cec309d9a1d75ac9 232 Gene3D G3DSA:3.60.21.10 1 218 2.4E-41 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like Trebr_0669 c6048c28fefeeb31cec309d9a1d75ac9 232 SUPERFAMILY SSF56300 1 213 8.05E-53 T 13-10-2018 Trebr_1920 5dc2f892e6704da82f28d5f039fd69d8 298 Gene3D G3DSA:1.10.3720.10 25 288 8.3E-53 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1920 5dc2f892e6704da82f28d5f039fd69d8 298 SUPERFAMILY SSF161098 30 297 2.09E-57 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 98 3.5E-26 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 211 32.283 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 Gene3D G3DSA:1.10.1050.10 6 211 1.8E-79 T 13-10-2018 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 SMART SM01390 3 98 2.3E-44 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 SMART SM00363 99 163 5.9E-23 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 ProSitePatterns PS00632 Ribosomal protein S4 signature. 97 121 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 Pfam PF01479 S4 domain 100 146 1.7E-21 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 Gene3D G3DSA:3.10.290.10 98 194 1.8E-79 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 SUPERFAMILY SSF55174 2 211 7.2E-62 T 13-10-2018 Trebr_2271 4b0f1dd655d08cec86337c070243b466 211 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 211 1.3E-65 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Trebr_1040 9e2b90a58e50750a4c38cf734e538993 187 Gene3D G3DSA:3.30.460.10 16 184 3.3E-45 T 13-10-2018 Trebr_1040 9e2b90a58e50750a4c38cf734e538993 187 Pfam PF04229 GrpB protein 19 176 2.1E-42 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase Trebr_1040 9e2b90a58e50750a4c38cf734e538993 187 SUPERFAMILY SSF81301 21 182 3.6E-45 T 13-10-2018 Trebr_1807 132a1e2ad2728d6fb8bbd960a1c79e86 389 Gene3D G3DSA:3.40.50.2000 182 341 1.6E-28 T 13-10-2018 Trebr_1807 132a1e2ad2728d6fb8bbd960a1c79e86 389 SUPERFAMILY SSF53756 62 341 3.04E-36 T 13-10-2018 Trebr_1807 132a1e2ad2728d6fb8bbd960a1c79e86 389 Pfam PF00534 Glycosyl transferases group 1 197 341 2.4E-18 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_1807 132a1e2ad2728d6fb8bbd960a1c79e86 389 Gene3D G3DSA:3.40.50.2000 46 181 1.6E-28 T 13-10-2018 Trebr_0552 9012f13587884ecc262285f84aed7616 682 Pfam PF00005 ABC transporter 344 474 1.1E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0552 9012f13587884ecc262285f84aed7616 682 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0552 9012f13587884ecc262285f84aed7616 682 SUPERFAMILY SSF52540 307 515 3.91E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0552 9012f13587884ecc262285f84aed7616 682 Gene3D G3DSA:3.40.50.300 2 285 2.0E-61 T 13-10-2018 Trebr_0552 9012f13587884ecc262285f84aed7616 682 Pfam PF16326 ABC transporter C-terminal domain 612 678 1.2E-8 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Trebr_0552 9012f13587884ecc262285f84aed7616 682 Pfam PF00005 ABC transporter 19 190 1.0E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0552 9012f13587884ecc262285f84aed7616 682 Gene3D G3DSA:3.40.50.300 288 545 5.4E-50 T 13-10-2018 Trebr_0552 9012f13587884ecc262285f84aed7616 682 SMART SM00382 352 519 3.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0552 9012f13587884ecc262285f84aed7616 682 SMART SM00382 28 235 6.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0552 9012f13587884ecc262285f84aed7616 682 Pfam PF12848 ABC transporter 230 314 6.3E-24 T 13-10-2018 IPR032781 ABC-transporter extension domain Trebr_0552 9012f13587884ecc262285f84aed7616 682 SUPERFAMILY SSF52540 4 270 2.22E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0552 9012f13587884ecc262285f84aed7616 682 ProSitePatterns PS00211 ABC transporters family signature. 446 460 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1850 6a13b687b748967f12a3c0e350a7ed49 551 SMART SM00331 333 550 6.5E-34 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1850 6a13b687b748967f12a3c0e350a7ed49 551 SUPERFAMILY SSF55781 127 327 7.06E-22 T 13-10-2018 Trebr_1850 6a13b687b748967f12a3c0e350a7ed49 551 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 360 550 8.8E-38 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1850 6a13b687b748967f12a3c0e350a7ed49 551 Gene3D G3DSA:3.30.450.40 126 307 2.9E-22 T 13-10-2018 IPR029016 GAF-like domain superfamily Trebr_1850 6a13b687b748967f12a3c0e350a7ed49 551 SMART SM00065 141 306 1.0E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 Trebr_1850 6a13b687b748967f12a3c0e350a7ed49 551 Pfam PF13185 GAF domain 142 296 2.5E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 Trebr_1850 6a13b687b748967f12a3c0e350a7ed49 551 Gene3D G3DSA:3.60.40.10 308 550 5.5E-49 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_2121 f65cebfc478262928bdbd6ddb9b932a0 563 PRINTS PR00113 Alkaline phosphatase signature 91 111 6.7E-11 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Trebr_2121 f65cebfc478262928bdbd6ddb9b932a0 563 PRINTS PR00113 Alkaline phosphatase signature 199 219 6.7E-11 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Trebr_2121 f65cebfc478262928bdbd6ddb9b932a0 563 PRINTS PR00113 Alkaline phosphatase signature 318 347 6.7E-11 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Trebr_2121 f65cebfc478262928bdbd6ddb9b932a0 563 SUPERFAMILY SSF53649 85 559 8.18E-89 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Trebr_2121 f65cebfc478262928bdbd6ddb9b932a0 563 Pfam PF00245 Alkaline phosphatase 92 557 2.7E-50 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Trebr_2121 f65cebfc478262928bdbd6ddb9b932a0 563 SMART SM00098 92 561 4.1E-15 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Trebr_1624 8e46df2f1e46c7ab87f37121200f6a45 530 Gene3D G3DSA:3.20.20.70 313 529 9.4E-48 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1624 8e46df2f1e46c7ab87f37121200f6a45 530 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 317 522 5.5E-29 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Trebr_1624 8e46df2f1e46c7ab87f37121200f6a45 530 Gene3D G3DSA:3.20.20.70 1 268 1.5E-67 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1624 8e46df2f1e46c7ab87f37121200f6a45 530 Pfam PF00218 Indole-3-glycerol phosphate synthase 41 168 8.5E-34 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Trebr_1624 8e46df2f1e46c7ab87f37121200f6a45 530 Pfam PF00218 Indole-3-glycerol phosphate synthase 195 265 1.6E-6 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Trebr_1624 8e46df2f1e46c7ab87f37121200f6a45 530 SUPERFAMILY SSF51366 1 265 2.0E-40 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Trebr_1624 8e46df2f1e46c7ab87f37121200f6a45 530 SUPERFAMILY SSF51366 316 525 1.48E-38 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Trebr_1624 8e46df2f1e46c7ab87f37121200f6a45 530 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 315 527 27.295 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 Pfam PF02811 PHP domain 31 204 1.9E-52 T 13-10-2018 IPR004013 PHP domain GO:0003824 Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 Gene3D G3DSA:1.10.10.1600 461 542 2.8E-20 T 13-10-2018 Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 Pfam PF14579 Helix-hairpin-helix motif 831 919 1.7E-26 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 29 1051 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 SUPERFAMILY SSF89550 29 294 1.0E-36 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 Gene3D G3DSA:1.10.150.870 799 908 9.0E-7 T 13-10-2018 Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 SMART SM00481 30 97 3.3E-32 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 Gene3D G3DSA:3.20.20.140 7 301 1.4E-112 T 13-10-2018 Trebr_0797 e7acf3fb7f94437116cff9c2de4120b4 1179 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 329 758 8.1E-161 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_2243 d20248c6210fd91a97452a225a21408c 80 Pfam PF12637 TSCPD domain 4 76 1.5E-34 T 13-10-2018 IPR024434 TSCPD domain Trebr_2243 d20248c6210fd91a97452a225a21408c 80 TIGRFAM TIGR03905 TIGR03905_4_Cys: uncharacterized protein TIGR03905 3 77 5.0E-35 T 13-10-2018 IPR023806 Conserved hypothetical protein CHP03905 Trebr_0680 f9dc7431c9f52b1cd97eb4c874a1ca7e 1299 Gene3D G3DSA:3.40.50.300 337 483 1.6E-33 T 13-10-2018 Trebr_0680 f9dc7431c9f52b1cd97eb4c874a1ca7e 1299 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 453 1.0E-55 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Trebr_0680 f9dc7431c9f52b1cd97eb4c874a1ca7e 1299 Gene3D G3DSA:3.40.50.300 3 175 1.2E-29 T 13-10-2018 Trebr_0680 f9dc7431c9f52b1cd97eb4c874a1ca7e 1299 Pfam PF13361 UvrD-like helicase C-terminal domain 582 932 5.0E-26 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Trebr_0680 f9dc7431c9f52b1cd97eb4c874a1ca7e 1299 SUPERFAMILY SSF52540 6 934 3.37E-99 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0680 f9dc7431c9f52b1cd97eb4c874a1ca7e 1299 Gene3D G3DSA:3.90.320.10 1090 1276 9.6E-10 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal Trebr_2584 f54f01d131ce075b7d9fb845c18996f1 434 Pfam PF13416 Bacterial extracellular solute-binding protein 70 378 3.9E-32 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2584 f54f01d131ce075b7d9fb845c18996f1 434 Gene3D G3DSA:3.40.190.10 67 396 5.8E-55 T 13-10-2018 Trebr_2584 f54f01d131ce075b7d9fb845c18996f1 434 Gene3D G3DSA:3.40.190.10 171 431 5.8E-55 T 13-10-2018 Trebr_2584 f54f01d131ce075b7d9fb845c18996f1 434 SUPERFAMILY SSF53850 38 434 9.32E-49 T 13-10-2018 Trebr_2110 51e9405c48c60243e7e01cd80e20e3a7 305 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 301 1.9E-129 T 13-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 Trebr_2110 51e9405c48c60243e7e01cd80e20e3a7 305 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 42.134 T 13-10-2018 IPR033752 MetA family Trebr_2110 51e9405c48c60243e7e01cd80e20e3a7 305 PIRSF PIRSF000450 1 305 1.5E-144 T 13-10-2018 IPR033752 MetA family Trebr_2110 51e9405c48c60243e7e01cd80e20e3a7 305 Pfam PF04204 Homoserine O-succinyltransferase 2 299 4.9E-135 T 13-10-2018 IPR033752 MetA family Trebr_2110 51e9405c48c60243e7e01cd80e20e3a7 305 Gene3D G3DSA:3.40.50.880 1 301 8.7E-127 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2110 51e9405c48c60243e7e01cd80e20e3a7 305 SUPERFAMILY SSF52317 17 297 2.52E-102 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2110 51e9405c48c60243e7e01cd80e20e3a7 305 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 1.0E-85 T 13-10-2018 Trebr_1693 3c5e6e8614fec53e07957a86df4a552c 274 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 13-10-2018 IPR018253 DnaJ domain, conserved site Trebr_1693 3c5e6e8614fec53e07957a86df4a552c 274 SUPERFAMILY SSF46565 2 71 5.89E-21 T 13-10-2018 IPR036869 Chaperone J-domain superfamily Trebr_1693 3c5e6e8614fec53e07957a86df4a552c 274 SMART SM00271 2 60 9.4E-22 T 13-10-2018 IPR001623 DnaJ domain Trebr_1693 3c5e6e8614fec53e07957a86df4a552c 274 Pfam PF00226 DnaJ domain 3 65 3.6E-21 T 13-10-2018 IPR001623 DnaJ domain Trebr_1693 3c5e6e8614fec53e07957a86df4a552c 274 Gene3D G3DSA:1.10.287.110 1 87 3.1E-22 T 13-10-2018 IPR036869 Chaperone J-domain superfamily Trebr_1693 3c5e6e8614fec53e07957a86df4a552c 274 PRINTS PR00625 DnaJ domain signature 23 38 2.7E-14 T 13-10-2018 IPR001623 DnaJ domain Trebr_1693 3c5e6e8614fec53e07957a86df4a552c 274 PRINTS PR00625 DnaJ domain signature 5 23 2.7E-14 T 13-10-2018 IPR001623 DnaJ domain Trebr_1693 3c5e6e8614fec53e07957a86df4a552c 274 PRINTS PR00625 DnaJ domain signature 40 60 2.7E-14 T 13-10-2018 IPR001623 DnaJ domain Trebr_0496 3790abe16e3a408d1ed6c986dc072150 798 Gene3D G3DSA:2.60.420.10 719 798 2.8E-29 T 13-10-2018 Trebr_0496 3790abe16e3a408d1ed6c986dc072150 798 Gene3D G3DSA:1.50.10.10 310 718 2.5E-126 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_0496 3790abe16e3a408d1ed6c986dc072150 798 Gene3D G3DSA:2.70.98.40 1 301 2.0E-97 T 13-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Trebr_0496 3790abe16e3a408d1ed6c986dc072150 798 SUPERFAMILY SSF74650 2 267 4.39E-68 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_0496 3790abe16e3a408d1ed6c986dc072150 798 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 295 724 3.9E-175 T 13-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain Trebr_0496 3790abe16e3a408d1ed6c986dc072150 798 Pfam PF06165 Glycosyltransferase family 36 21 265 9.1E-83 T 13-10-2018 IPR010383 Glycosyl hydrolase 94 Trebr_0496 3790abe16e3a408d1ed6c986dc072150 798 SMART SM01068 1 63 1.0E-10 T 13-10-2018 IPR009342 Putative carbohydrate binding domain Trebr_0496 3790abe16e3a408d1ed6c986dc072150 798 SUPERFAMILY SSF48208 277 798 1.25E-98 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_0112 076df3f1945b5d9e93f0f9a0235b18ff 104 Pfam PF01381 Helix-turn-helix 11 65 9.9E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0112 076df3f1945b5d9e93f0f9a0235b18ff 104 SMART SM00530 10 65 1.7E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0112 076df3f1945b5d9e93f0f9a0235b18ff 104 Gene3D G3DSA:1.10.260.40 1 75 3.5E-20 T 13-10-2018 Trebr_0112 076df3f1945b5d9e93f0f9a0235b18ff 104 SUPERFAMILY SSF47413 2 71 4.83E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 SUPERFAMILY SSF52540 67 378 4.02E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 Pfam PF02978 Signal peptide binding domain 351 447 5.6E-30 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 TIGRFAM TIGR00959 ffh: signal recognition particle protein 28 450 5.4E-177 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 Pfam PF00448 SRP54-type protein, GTPase domain 127 320 7.3E-74 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 SMART SM00962 126 320 3.8E-110 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 Gene3D G3DSA:1.10.260.30 334 467 2.6E-37 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 Gene3D G3DSA:3.40.50.300 115 309 1.8E-121 T 13-10-2018 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 Pfam PF02881 SRP54-type protein, helical bundle domain 31 106 7.5E-17 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 SMART SM00382 125 325 2.8E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 293 306 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 SUPERFAMILY SSF47446 351 451 4.41E-31 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 SMART SM00963 26 111 2.5E-28 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 Gene3D G3DSA:1.20.120.140 30 330 1.8E-121 T 13-10-2018 Trebr_0890 becb08de47d9ee5354ac17b60d539502 468 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 30 462 32.739 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 Trebr_2132 8d7ca51ce1841100b994f044bd337d4a 381 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 69 363 1.8E-108 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Trebr_2132 8d7ca51ce1841100b994f044bd337d4a 381 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 57 368 37.87 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Trebr_2132 8d7ca51ce1841100b994f044bd337d4a 381 Gene3D G3DSA:3.40.1390.20 68 190 1.1E-33 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Trebr_2132 8d7ca51ce1841100b994f044bd337d4a 381 Gene3D G3DSA:3.40.50.300 192 376 3.0E-71 T 13-10-2018 Trebr_2132 8d7ca51ce1841100b994f044bd337d4a 381 Pfam PF02603 HPr Serine kinase N terminus 71 186 1.0E-33 T 13-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Trebr_2132 8d7ca51ce1841100b994f044bd337d4a 381 SUPERFAMILY SSF53795 194 360 1.37E-39 T 13-10-2018 Trebr_2132 8d7ca51ce1841100b994f044bd337d4a 381 SUPERFAMILY SSF75138 72 192 3.53E-28 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Trebr_2132 8d7ca51ce1841100b994f044bd337d4a 381 Pfam PF07475 HPr Serine kinase C-terminal domain 192 360 1.2E-70 T 13-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Trebr_2285 b353ceaa66b69b56ebd03b1107bd461c 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 25.791 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Trebr_2285 b353ceaa66b69b56ebd03b1107bd461c 122 SUPERFAMILY SSF50193 1 122 7.46E-52 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_2285 b353ceaa66b69b56ebd03b1107bd461c 122 SMART SM01374 1 122 1.6E-84 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Trebr_2285 b353ceaa66b69b56ebd03b1107bd461c 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 3.9E-59 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 Trebr_2285 b353ceaa66b69b56ebd03b1107bd461c 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2285 b353ceaa66b69b56ebd03b1107bd461c 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 1.1E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Trebr_2285 b353ceaa66b69b56ebd03b1107bd461c 122 Gene3D G3DSA:2.40.150.20 1 122 8.8E-54 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 108 159 7.6E-13 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 Pfam PF03129 Anticodon binding domain 485 574 9.1E-22 T 13-10-2018 IPR004154 Anticodon-binding Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 Gene3D G3DSA:3.30.930.10 163 475 3.8E-125 T 13-10-2018 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 262 472 1.0E-42 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 SMART SM00863 108 159 2.3E-23 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 Gene3D G3DSA:3.40.50.800 476 581 1.7E-27 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 13 575 6.2E-211 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 Gene3D G3DSA:3.30.54.20 71 125 9.3E-66 T 13-10-2018 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 SUPERFAMILY SSF52954 471 578 4.23E-28 T 13-10-2018 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 Gene3D G3DSA:3.30.980.10 11 162 9.3E-66 T 13-10-2018 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 SUPERFAMILY SSF55186 6 180 1.11E-61 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 PRINTS PR01047 Threonyl-tRNA synthetase signature 302 325 9.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 PRINTS PR01047 Threonyl-tRNA synthetase signature 269 297 9.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 PRINTS PR01047 Threonyl-tRNA synthetase signature 478 490 9.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 PRINTS PR01047 Threonyl-tRNA synthetase signature 406 434 9.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 PRINTS PR01047 Threonyl-tRNA synthetase signature 451 464 9.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 SUPERFAMILY SSF55681 183 470 1.45E-93 T 13-10-2018 Trebr_0824 e81ecef560ca6972692e33032ea104a1 583 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 7 578 33.82 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 Pfam PF00149 Calcineurin-like phosphoesterase 37 244 1.1E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 SUPERFAMILY SSF56300 30 315 5.6E-80 T 13-10-2018 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 Pfam PF02872 5'-nucleotidase, C-terminal domain 320 476 8.5E-38 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 SUPERFAMILY SSF55816 315 515 3.79E-50 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 Gene3D G3DSA:3.60.21.10 29 317 2.2E-84 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 PRINTS PR01607 Apyrase family signature 255 275 2.9E-36 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 PRINTS PR01607 Apyrase family signature 227 250 2.9E-36 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 PRINTS PR01607 Apyrase family signature 201 218 2.9E-36 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 PRINTS PR01607 Apyrase family signature 34 52 2.9E-36 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 PRINTS PR01607 Apyrase family signature 450 469 2.9E-36 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 PRINTS PR01607 Apyrase family signature 377 400 2.9E-36 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_2434 4cc1d36ab8179b902e35bfd4abb6c071 519 Gene3D G3DSA:3.90.780.10 319 510 1.0E-49 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 Gene3D G3DSA:1.10.260.40 4 62 4.2E-19 T 13-10-2018 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 13-10-2018 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 Gene3D G3DSA:3.40.50.2300 162 293 2.3E-59 T 13-10-2018 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 51 1.3E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 2.2E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 2.2E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 SUPERFAMILY SSF53822 65 320 7.46E-50 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 Pfam PF13377 Periplasmic binding protein-like domain 170 332 5.9E-28 T 13-10-2018 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 SUPERFAMILY SSF47413 5 55 2.69E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 Gene3D G3DSA:3.40.50.2300 66 313 2.3E-59 T 13-10-2018 Trebr_0421 b3bc7a3b2f1a14258c5ab2725af1f726 337 SMART SM00354 5 75 3.5E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0021 c9d7a91c2eb269001e06f387e021295c 309 Gene3D G3DSA:1.10.3720.10 61 309 1.4E-56 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0021 c9d7a91c2eb269001e06f387e021295c 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 296 3.2E-11 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0021 c9d7a91c2eb269001e06f387e021295c 309 SUPERFAMILY SSF161098 65 293 4.32E-46 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1928 4af5a5cf07040b2106202653a0de614b 554 SUPERFAMILY SSF64158 90 330 2.22E-68 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_1928 4af5a5cf07040b2106202653a0de614b 554 Pfam PF01676 Metalloenzyme superfamily 17 543 3.3E-65 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Trebr_1928 4af5a5cf07040b2106202653a0de614b 554 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 17 551 6.2E-124 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_1928 4af5a5cf07040b2106202653a0de614b 554 Gene3D G3DSA:3.40.720.10 18 544 2.3E-184 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Trebr_1928 4af5a5cf07040b2106202653a0de614b 554 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 95 321 6.8E-67 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_1928 4af5a5cf07040b2106202653a0de614b 554 PIRSF PIRSF001492 11 554 2.5E-173 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_1928 4af5a5cf07040b2106202653a0de614b 554 Gene3D G3DSA:3.40.1450.10 90 337 2.3E-184 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_1928 4af5a5cf07040b2106202653a0de614b 554 SUPERFAMILY SSF53649 17 548 4.32E-52 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Trebr_0871 47d8ce83bac98e8546f17c36a5686d2c 410 Pfam PF02687 FtsX-like permease family 313 404 8.8E-14 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_0871 47d8ce83bac98e8546f17c36a5686d2c 410 Pfam PF12704 MacB-like periplasmic core domain 19 219 1.4E-21 T 13-10-2018 IPR025857 MacB-like periplasmic core domain Trebr_2540 90289847998886d30629f586469d6547 295 SUPERFAMILY SSF69572 11 292 3.01E-56 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Trebr_2540 90289847998886d30629f586469d6547 295 Pfam PF00899 ThiF family 17 285 3.7E-34 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Trebr_2540 90289847998886d30629f586469d6547 295 Gene3D G3DSA:3.40.50.720 6 240 9.3E-70 T 13-10-2018 Trebr_2135 f847825acff837bb8a886004317ff693 427 SUPERFAMILY SSF56176 346 425 1.58E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Trebr_2135 f847825acff837bb8a886004317ff693 427 Pfam PF00571 CBS domain 280 330 8.1E-5 T 13-10-2018 IPR000644 CBS domain Trebr_2135 f847825acff837bb8a886004317ff693 427 Pfam PF00571 CBS domain 214 258 0.0011 T 13-10-2018 IPR000644 CBS domain Trebr_2135 f847825acff837bb8a886004317ff693 427 Gene3D G3DSA:3.30.465.10 344 427 1.0E-15 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Trebr_2135 f847825acff837bb8a886004317ff693 427 Gene3D G3DSA:3.10.580.10 181 341 7.0E-44 T 13-10-2018 Trebr_2135 f847825acff837bb8a886004317ff693 427 Pfam PF03471 Transporter associated domain 352 425 1.3E-16 T 13-10-2018 IPR005170 Transporter-associated domain Trebr_2135 f847825acff837bb8a886004317ff693 427 Pfam PF01595 Domain of unknown function DUF21 8 187 2.9E-46 T 13-10-2018 IPR002550 CNNM, transmembrane domain Trebr_2135 f847825acff837bb8a886004317ff693 427 SMART SM00116 211 260 4.0 T 13-10-2018 IPR000644 CBS domain Trebr_2135 f847825acff837bb8a886004317ff693 427 SMART SM00116 282 330 2.1 T 13-10-2018 IPR000644 CBS domain Trebr_2135 f847825acff837bb8a886004317ff693 427 SMART SM01091 349 427 2.6E-18 T 13-10-2018 IPR005170 Transporter-associated domain Trebr_2135 f847825acff837bb8a886004317ff693 427 SUPERFAMILY SSF54631 189 332 6.19E-26 T 13-10-2018 Trebr_1342 477fef03816882c92a952863f4f5a7d9 273 SUPERFAMILY SSF53067 2 123 5.36E-24 T 13-10-2018 Trebr_1342 477fef03816882c92a952863f4f5a7d9 273 Gene3D G3DSA:3.30.420.40 1 88 2.4E-24 T 13-10-2018 Trebr_1342 477fef03816882c92a952863f4f5a7d9 273 Pfam PF03309 Type III pantothenate kinase 2 207 1.1E-51 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Trebr_1342 477fef03816882c92a952863f4f5a7d9 273 SUPERFAMILY SSF53067 126 260 2.12E-30 T 13-10-2018 Trebr_1342 477fef03816882c92a952863f4f5a7d9 273 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 259 1.9E-58 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Trebr_1342 477fef03816882c92a952863f4f5a7d9 273 Gene3D G3DSA:3.30.420.40 95 265 7.8E-45 T 13-10-2018 Trebr_1342 477fef03816882c92a952863f4f5a7d9 273 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 263 28.158 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Trebr_1182 d1b0a2660965d9b7fb1ab4f6d7828c96 347 Gene3D G3DSA:2.70.98.10 1 347 5.1E-122 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Trebr_1182 d1b0a2660965d9b7fb1ab4f6d7828c96 347 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 175 184 - T 13-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 Trebr_1182 d1b0a2660965d9b7fb1ab4f6d7828c96 347 Pfam PF01263 Aldose 1-epimerase 19 343 6.8E-86 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 Trebr_1182 d1b0a2660965d9b7fb1ab4f6d7828c96 347 PIRSF PIRSF005096 1 347 5.5E-122 T 13-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 Trebr_1182 d1b0a2660965d9b7fb1ab4f6d7828c96 347 SUPERFAMILY SSF74650 7 346 1.19E-112 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_1763 9d5177b68ca5d635f22531b062e4c061 511 Gene3D G3DSA:3.10.50.40 240 340 2.2E-7 T 13-10-2018 Trebr_1763 9d5177b68ca5d635f22531b062e4c061 511 SUPERFAMILY SSF54534 235 334 3.6E-9 T 13-10-2018 Trebr_1763 9d5177b68ca5d635f22531b062e4c061 511 Pfam PF00639 PPIC-type PPIASE domain 253 334 4.2E-6 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Trebr_0070 43fbfd3323af4e2342c55959886a4fb1 216 PIRSF PIRSF001357 2 216 4.5E-75 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Trebr_0070 43fbfd3323af4e2342c55959886a4fb1 216 Pfam PF01791 DeoC/LacD family aldolase 9 206 4.8E-17 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Trebr_0070 43fbfd3323af4e2342c55959886a4fb1 216 SUPERFAMILY SSF51569 4 213 1.26E-80 T 13-10-2018 Trebr_0070 43fbfd3323af4e2342c55959886a4fb1 216 Gene3D G3DSA:3.20.20.70 2 216 1.1E-92 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0070 43fbfd3323af4e2342c55959886a4fb1 216 SMART SM01133 4 215 2.1E-92 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Trebr_0070 43fbfd3323af4e2342c55959886a4fb1 216 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 5 213 1.5E-79 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Trebr_0070 43fbfd3323af4e2342c55959886a4fb1 216 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 3 216 33.472 T 13-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 Trebr_0855 e6594502c72d6441562f8102b7d9223c 373 SMART SM00900 263 345 8.3E-7 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Trebr_0855 e6594502c72d6441562f8102b7d9223c 373 SMART SM00900 94 176 6.2E-12 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Trebr_0855 e6594502c72d6441562f8102b7d9223c 373 Pfam PF04205 FMN-binding domain 269 339 1.7E-8 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Trebr_0855 e6594502c72d6441562f8102b7d9223c 373 Pfam PF04205 FMN-binding domain 98 172 3.9E-13 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Trebr_1447 900daf27dca4ed6b6ab20d65f2b39237 437 Pfam PF01547 Bacterial extracellular solute-binding protein 55 352 8.7E-25 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_1447 900daf27dca4ed6b6ab20d65f2b39237 437 Gene3D G3DSA:3.40.190.10 24 436 2.5E-52 T 13-10-2018 Trebr_1447 900daf27dca4ed6b6ab20d65f2b39237 437 SUPERFAMILY SSF53850 32 436 5.11E-49 T 13-10-2018 Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 SMART SM00271 4 62 4.4E-32 T 13-10-2018 IPR001623 DnaJ domain Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 SUPERFAMILY SSF46565 1 104 1.57E-36 T 13-10-2018 IPR036869 Chaperone J-domain superfamily Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 SUPERFAMILY SSF49493 124 275 3.01E-19 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 PRINTS PR00625 DnaJ domain signature 7 25 2.1E-32 T 13-10-2018 IPR001623 DnaJ domain Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 PRINTS PR00625 DnaJ domain signature 25 40 2.1E-32 T 13-10-2018 IPR001623 DnaJ domain Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 PRINTS PR00625 DnaJ domain signature 42 62 2.1E-32 T 13-10-2018 IPR001623 DnaJ domain Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 PRINTS PR00625 DnaJ domain signature 62 81 2.1E-32 T 13-10-2018 IPR001623 DnaJ domain Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 Pfam PF00684 DnaJ central domain 155 215 2.5E-13 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 SUPERFAMILY SSF57938 142 219 2.09E-20 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 374 39.629 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 Gene3D G3DSA:1.10.287.110 1 117 1.2E-37 T 13-10-2018 IPR036869 Chaperone J-domain superfamily Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 Gene3D G3DSA:2.60.260.20 125 257 3.3E-37 T 13-10-2018 Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 Gene3D G3DSA:2.10.230.10 155 215 3.3E-37 T 13-10-2018 Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 Pfam PF01556 DnaJ C terminal domain 129 342 2.3E-42 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 Pfam PF00226 DnaJ domain 5 67 7.8E-29 T 13-10-2018 IPR001623 DnaJ domain Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 13-10-2018 IPR018253 DnaJ domain, conserved site Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 Gene3D G3DSA:2.60.260.20 262 366 7.5E-30 T 13-10-2018 Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 358 5.7E-132 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Trebr_1496 bd0983f64673a3e563918f0f77fc5aac 375 SUPERFAMILY SSF49493 266 353 1.83E-23 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Trebr_2509 0de4ca72137c040fe81dd4c82b2ffc76 776 SUPERFAMILY SSF56601 273 653 2.41E-71 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Trebr_2509 0de4ca72137c040fe81dd4c82b2ffc76 776 Gene3D G3DSA:3.40.710.10 264 649 1.7E-69 T 13-10-2018 Trebr_2509 0de4ca72137c040fe81dd4c82b2ffc76 776 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 693 773 1.7E-9 T 13-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_2509 0de4ca72137c040fe81dd4c82b2ffc76 776 Gene3D G3DSA:1.10.3810.10 60 259 4.4E-48 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_2509 0de4ca72137c040fe81dd4c82b2ffc76 776 SUPERFAMILY SSF53955 56 243 5.34E-51 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily Trebr_2509 0de4ca72137c040fe81dd4c82b2ffc76 776 Pfam PF00905 Penicillin binding protein transpeptidase domain 322 560 1.0E-17 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Trebr_2509 0de4ca72137c040fe81dd4c82b2ffc76 776 Pfam PF00912 Transglycosylase 77 236 1.9E-46 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 SUPERFAMILY SSF140990 456 648 9.68E-63 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 151 645 6.3E-221 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 ProSitePatterns PS00674 AAA-protein family signature. 345 363 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 Gene3D G3DSA:1.20.58.760 451 653 8.4E-65 T 13-10-2018 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 243 374 5.4E-46 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 Gene3D G3DSA:1.10.8.60 376 450 2.1E-29 T 13-10-2018 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 Pfam PF01434 Peptidase family M41 436 644 5.2E-71 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 657 35.837 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 SUPERFAMILY SSF52540 204 445 8.05E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 Gene3D G3DSA:3.40.50.300 194 375 1.3E-66 T 13-10-2018 Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 SMART SM00382 239 377 9.0E-25 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0499 29edbbcffdeddca500cbd5972456c40a 660 Pfam PF06480 FtsH Extracellular 42 143 4.6E-6 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Trebr_1856 5c452a0b04ae42e04fff344a8988fba0 629 SUPERFAMILY SSF64518 151 627 1.26E-18 T 13-10-2018 Trebr_1856 5c452a0b04ae42e04fff344a8988fba0 629 Pfam PF07196 Flagellin hook IN motif 377 426 1.2E-5 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Trebr_1856 5c452a0b04ae42e04fff344a8988fba0 629 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 7 342 3.9E-75 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Trebr_1856 5c452a0b04ae42e04fff344a8988fba0 629 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 582 625 2.2E-10 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Trebr_1856 5c452a0b04ae42e04fff344a8988fba0 629 PRINTS PR01005 Flagellar hook-associated protein signature 14 37 9.0E-11 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Trebr_1856 5c452a0b04ae42e04fff344a8988fba0 629 PRINTS PR01005 Flagellar hook-associated protein signature 167 191 9.0E-11 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Trebr_1856 5c452a0b04ae42e04fff344a8988fba0 629 PRINTS PR01005 Flagellar hook-associated protein signature 134 154 9.0E-11 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Trebr_1055 5d0cddfb809d261a129dcec26e28d14b 112 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 3 111 7.0E-36 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Trebr_1055 5d0cddfb809d261a129dcec26e28d14b 112 Pfam PF01588 Putative tRNA binding domain 15 109 1.7E-31 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Trebr_1055 5d0cddfb809d261a129dcec26e28d14b 112 Gene3D G3DSA:2.40.50.140 9 112 2.1E-40 T 13-10-2018 Trebr_1055 5d0cddfb809d261a129dcec26e28d14b 112 SUPERFAMILY SSF50249 9 111 2.35E-36 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1307 51a3aefa30e55033e46d03d7da457e6b 443 SUPERFAMILY SSF53623 28 303 2.54E-80 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_1307 51a3aefa30e55033e46d03d7da457e6b 443 Pfam PF08245 Mur ligase middle domain 53 284 3.7E-9 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Trebr_1307 51a3aefa30e55033e46d03d7da457e6b 443 SUPERFAMILY SSF53244 307 438 3.89E-18 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_1307 51a3aefa30e55033e46d03d7da457e6b 443 Gene3D G3DSA:3.40.1190.10 3 304 4.0E-86 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_1307 51a3aefa30e55033e46d03d7da457e6b 443 TIGRFAM TIGR01499 folC: bifunctional protein FolC 31 438 4.6E-101 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Trebr_1307 51a3aefa30e55033e46d03d7da457e6b 443 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 152 167 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 Trebr_1307 51a3aefa30e55033e46d03d7da457e6b 443 Gene3D G3DSA:3.90.190.20 307 441 6.8E-22 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_1307 51a3aefa30e55033e46d03d7da457e6b 443 PIRSF PIRSF001563 2 442 2.0E-96 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Trebr_0882 defbd8864b172f13cb8d584bb1375bad 648 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 23 438 3.5E-109 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_0882 defbd8864b172f13cb8d584bb1375bad 648 SMART SM00434 2 434 4.5E-102 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_0882 defbd8864b172f13cb8d584bb1375bad 648 Gene3D G3DSA:3.90.199.10 23 434 2.4E-107 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Trebr_0882 defbd8864b172f13cb8d584bb1375bad 648 Gene3D G3DSA:1.10.268.10 332 428 2.4E-107 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Trebr_0882 defbd8864b172f13cb8d584bb1375bad 648 Gene3D G3DSA:3.30.1360.40 205 295 2.4E-107 T 13-10-2018 Trebr_0882 defbd8864b172f13cb8d584bb1375bad 648 SUPERFAMILY SSF56719 5 456 1.31E-105 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Trebr_1860 a6a2ba649d44e5886ef1baae3552d5ff 65 Pfam PF00403 Heavy-metal-associated domain 3 44 9.1E-8 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Trebr_1860 a6a2ba649d44e5886ef1baae3552d5ff 65 Gene3D G3DSA:3.30.70.100 1 65 1.6E-11 T 13-10-2018 Trebr_1860 a6a2ba649d44e5886ef1baae3552d5ff 65 SUPERFAMILY SSF55008 2 63 2.49E-10 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Trebr_2028 61870fac33774a50c351afd28a4aca31 537 Pfam PF00890 FAD binding domain 91 471 1.1E-69 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Trebr_2028 61870fac33774a50c351afd28a4aca31 537 SUPERFAMILY SSF56425 313 432 1.12E-23 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Trebr_2028 61870fac33774a50c351afd28a4aca31 537 Gene3D G3DSA:3.50.50.60 91 483 2.0E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2028 61870fac33774a50c351afd28a4aca31 537 Gene3D G3DSA:3.90.700.10 322 438 2.0E-114 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Trebr_2028 61870fac33774a50c351afd28a4aca31 537 SUPERFAMILY SSF51905 86 503 2.13E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2028 61870fac33774a50c351afd28a4aca31 537 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 92 111 2.0E-6 T 13-10-2018 Trebr_2028 61870fac33774a50c351afd28a4aca31 537 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 435 457 2.0E-6 T 13-10-2018 Trebr_1540 f7ca405fe2d124fe5ecc6ee1a9a01d82 334 SUPERFAMILY SSF64182 19 320 2.09E-51 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily Trebr_1540 f7ca405fe2d124fe5ecc6ee1a9a01d82 334 Pfam PF02272 DHHA1 domain 196 326 1.6E-9 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Trebr_1540 f7ca405fe2d124fe5ecc6ee1a9a01d82 334 Pfam PF01368 DHH family 22 170 7.8E-13 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Trebr_1540 f7ca405fe2d124fe5ecc6ee1a9a01d82 334 Gene3D G3DSA:3.10.310.30 219 334 1.3E-25 T 13-10-2018 Trebr_1540 f7ca405fe2d124fe5ecc6ee1a9a01d82 334 Gene3D G3DSA:3.90.1640.10 7 218 3.4E-43 T 13-10-2018 Trebr_2084 e80053ad316a3b30e4ce24c6093c0b83 382 SUPERFAMILY SSF53613 64 368 9.04E-24 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2084 e80053ad316a3b30e4ce24c6093c0b83 382 Pfam PF00294 pfkB family carbohydrate kinase 255 368 2.8E-9 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB Trebr_2084 e80053ad316a3b30e4ce24c6093c0b83 382 Gene3D G3DSA:3.40.1190.20 4 372 1.2E-30 T 13-10-2018 IPR029056 Ribokinase-like Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 Hamap MF_00105 Transcription elongation factor GreA [greA]. 742 895 24.707 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 Gene3D G3DSA:1.10.287.180 742 815 1.6E-17 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 SUPERFAMILY SSF46557 745 818 9.42E-17 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 Gene3D G3DSA:3.10.50.30 816 899 2.6E-16 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 823 895 1.9E-19 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 746 895 1.4E-43 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 SUPERFAMILY SSF48452 138 321 1.9E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 Pfam PF03449 Transcription elongation factor, N-terminal 745 814 3.9E-18 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Trebr_1732 e8e20cfbeec6ae24db59cd3fb7547416 899 SUPERFAMILY SSF54534 823 895 1.83E-13 T 13-10-2018 Trebr_1414 2731886c5365d3e0bc38635675fdfc38 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 9.3E-31 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Trebr_1414 2731886c5365d3e0bc38635675fdfc38 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 34 76 6.0E-17 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Trebr_1414 2731886c5365d3e0bc38635675fdfc38 78 Pfam PF00550 Phosphopantetheine attachment site 7 73 3.3E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain Trebr_1414 2731886c5365d3e0bc38635675fdfc38 78 Gene3D G3DSA:1.10.1200.10 1 78 1.1E-26 T 13-10-2018 IPR036736 ACP-like superfamily Trebr_1414 2731886c5365d3e0bc38635675fdfc38 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 20.329 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Trebr_1414 2731886c5365d3e0bc38635675fdfc38 78 SUPERFAMILY SSF47336 1 77 3.8E-22 T 13-10-2018 IPR036736 ACP-like superfamily Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 Gene3D G3DSA:3.30.70.600 1 102 3.0E-37 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 7.4E-19 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 7.4E-19 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 7.4E-19 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-45 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 SUPERFAMILY SSF54999 5 101 3.92E-37 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 1.2E-35 T 13-10-2018 IPR027486 Ribosomal protein S10 domain Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 SMART SM01403 7 101 1.5E-55 T 13-10-2018 IPR027486 Ribosomal protein S10 domain Trebr_2296 11c30b51ab3a2d04b2af4dc4f3f5ee55 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.393 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_0009 6c277062e68a7759365813b111c3f58f 233 SMART SM01245 4 53 1.0E-11 T 13-10-2018 IPR032782 Jag, N-terminal Trebr_0009 6c277062e68a7759365813b111c3f58f 233 SMART SM00393 151 230 7.9E-23 T 13-10-2018 IPR001374 R3H domain GO:0003676 Trebr_0009 6c277062e68a7759365813b111c3f58f 233 Gene3D G3DSA:3.30.1370.50 166 233 9.4E-24 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 Trebr_0009 6c277062e68a7759365813b111c3f58f 233 Pfam PF01424 R3H domain 171 227 2.5E-11 T 13-10-2018 IPR001374 R3H domain GO:0003676 Trebr_0009 6c277062e68a7759365813b111c3f58f 233 Gene3D G3DSA:3.30.30.80 3 50 1.0E-6 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily Trebr_0009 6c277062e68a7759365813b111c3f58f 233 Gene3D G3DSA:3.30.300.20 83 165 1.1E-20 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta Trebr_0009 6c277062e68a7759365813b111c3f58f 233 Pfam PF14804 Jag N-terminus 5 50 2.0E-12 T 13-10-2018 IPR032782 Jag, N-terminal Trebr_0009 6c277062e68a7759365813b111c3f58f 233 Pfam PF13083 KH domain 88 157 1.4E-11 T 13-10-2018 Trebr_0009 6c277062e68a7759365813b111c3f58f 233 SUPERFAMILY SSF82708 184 228 1.14E-6 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 Trebr_2238 6fac3c5271080fef8049fddf62e47370 682 Gene3D G3DSA:3.20.20.80 10 343 1.4E-94 T 13-10-2018 Trebr_2238 6fac3c5271080fef8049fddf62e47370 682 Gene3D G3DSA:3.20.20.80 455 676 9.5E-31 T 13-10-2018 Trebr_2238 6fac3c5271080fef8049fddf62e47370 682 SUPERFAMILY SSF51445 13 666 8.57E-106 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2238 6fac3c5271080fef8049fddf62e47370 682 Pfam PF02446 4-alpha-glucanotransferase 17 652 3.4E-129 T 13-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Trebr_1038 5e7727ea780e137f3fc0d81591d8d624 253 SUPERFAMILY SSF51556 3 253 1.9E-68 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_1038 5e7727ea780e137f3fc0d81591d8d624 253 Gene3D G3DSA:3.20.20.140 1 253 5.6E-78 T 13-10-2018 Trebr_1038 5e7727ea780e137f3fc0d81591d8d624 253 Pfam PF04909 Amidohydrolase 17 252 6.3E-43 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Trebr_0237 5e4c335754c653e50e74b724bd3a5d2b 97 Gene3D G3DSA:3.30.1360.60 7 86 1.2E-15 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 Trebr_0237 5e4c335754c653e50e74b724bd3a5d2b 97 SUPERFAMILY SSF55604 12 79 4.84E-14 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 Trebr_0237 5e4c335754c653e50e74b724bd3a5d2b 97 Pfam PF00367 phosphotransferase system, EIIB 17 44 3.6E-8 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Trebr_0237 5e4c335754c653e50e74b724bd3a5d2b 97 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 23 40 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Trebr_2239 9aa24c693433941fad72a16bb0585fd9 1269 SMART SM00642 342 733 0.0021 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_2239 9aa24c693433941fad72a16bb0585fd9 1269 SUPERFAMILY SSF51445 338 797 6.47E-58 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2239 9aa24c693433941fad72a16bb0585fd9 1269 Pfam PF00128 Alpha amylase, catalytic domain 346 706 2.8E-9 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 294 1.1E-113 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.7E-13 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.7E-13 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.7E-13 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.7E-13 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 SUPERFAMILY SSF55681 10 518 5.55E-95 T 13-10-2018 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 SUPERFAMILY SSF55826 220 429 1.03E-15 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 Gene3D G3DSA:3.30.930.10 11 505 5.3E-219 T 13-10-2018 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 SUPERFAMILY SSF52954 503 605 4.68E-27 T 13-10-2018 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 Pfam PF03129 Anticodon binding domain 515 591 1.0E-18 T 13-10-2018 IPR004154 Anticodon-binding Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 499 3.2E-45 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 607 37.462 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 Pfam PF04073 Aminoacyl-tRNA editing domain 263 385 5.9E-16 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 Gene3D G3DSA:3.40.50.800 4 588 5.3E-219 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily Trebr_0274 6c921a76c70cc38288e1e19a589740a0 615 Gene3D G3DSA:3.90.960.10 240 429 5.3E-219 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 Gene3D G3DSA:3.30.70.120 212 284 3.4E-17 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 3 284 25.311 T 13-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 SUPERFAMILY SSF53850 3 209 6.3E-47 T 13-10-2018 Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 184 282 1.5E-27 T 13-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 Pfam PF01634 ATP phosphoribosyltransferase 50 197 2.5E-37 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 SUPERFAMILY SSF54913 212 283 1.78E-16 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 Pfam PF08029 HisG, C-terminal domain 209 281 2.3E-21 T 13-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 4 181 1.1E-44 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 Gene3D G3DSA:3.40.190.10 89 176 5.7E-53 T 13-10-2018 Trebr_0180 79474e4fb5e772dfcd31332fe8e24916 284 Gene3D G3DSA:3.40.190.10 6 197 5.7E-53 T 13-10-2018 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 Gene3D G3DSA:1.10.10.2730 222 268 2.2E-18 T 13-10-2018 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 267 4.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 251 4.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 Pfam PF12833 Helix-turn-helix domain 191 269 2.9E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 SUPERFAMILY SSF52172 1 133 2.28E-33 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_2531 631a7176c0caa12715039b5f499c4308 270 Pfam PF00072 Response regulator receiver domain 4 122 4.5E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 SMART SM00342 184 267 3.6E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 SUPERFAMILY SSF46689 169 217 6.99E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 SMART SM00448 2 122 4.8E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 Gene3D G3DSA:1.10.10.60 166 221 6.5E-12 T 13-10-2018 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 SUPERFAMILY SSF46689 220 269 4.93E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 263 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_2531 631a7176c0caa12715039b5f499c4308 270 Gene3D G3DSA:3.40.50.2300 1 134 1.3E-31 T 13-10-2018 Trebr_0791 1b70d1cd2dc4aeb21146518ddf36e43f 138 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 1 137 21.685 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 Trebr_0791 1b70d1cd2dc4aeb21146518ddf36e43f 138 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 3 135 2.5E-38 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 Trebr_0791 1b70d1cd2dc4aeb21146518ddf36e43f 138 SUPERFAMILY SSF48013 2 136 5.23E-38 T 13-10-2018 IPR035926 NusB-like superfamily Trebr_0791 1b70d1cd2dc4aeb21146518ddf36e43f 138 Gene3D G3DSA:1.10.940.10 1 138 9.5E-41 T 13-10-2018 IPR035926 NusB-like superfamily Trebr_0791 1b70d1cd2dc4aeb21146518ddf36e43f 138 Pfam PF01029 NusB family 5 133 5.1E-33 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 SMART SM00028 465 498 3.3E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 SMART SM00028 429 462 110.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 Pfam PF07719 Tetratricopeptide repeat 467 498 1.5E-5 T 13-10-2018 IPR013105 Tetratricopeptide repeat 2 Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 SUPERFAMILY SSF53300 88 236 5.4E-19 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 SMART SM00327 85 265 2.4E-14 T 13-10-2018 IPR002035 von Willebrand factor, type A Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 SUPERFAMILY SSF48452 402 511 1.64E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 Gene3D G3DSA:1.25.40.10 399 518 1.1E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 Gene3D G3DSA:3.40.50.410 80 278 6.7E-34 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_2094 e11f35db9c4dacb732d2ed35d58324bc 566 Pfam PF00092 von Willebrand factor type A domain 88 249 1.9E-12 T 13-10-2018 IPR002035 von Willebrand factor, type A Trebr_0870 e0031e9fda8f0f632f42a95481537d06 52 SUPERFAMILY SSF57802 1 51 1.62E-23 T 13-10-2018 Trebr_0870 e0031e9fda8f0f632f42a95481537d06 52 Pfam PF00301 Rubredoxin 3 49 3.4E-26 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 Trebr_0870 e0031e9fda8f0f632f42a95481537d06 52 Gene3D G3DSA:2.20.28.10 1 52 3.5E-29 T 13-10-2018 Trebr_0870 e0031e9fda8f0f632f42a95481537d06 52 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 13-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 Trebr_0870 e0031e9fda8f0f632f42a95481537d06 52 PRINTS PR00163 Rubredoxin signature 3 19 1.1E-13 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 Trebr_0870 e0031e9fda8f0f632f42a95481537d06 52 PRINTS PR00163 Rubredoxin signature 33 49 1.1E-13 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 Trebr_0870 e0031e9fda8f0f632f42a95481537d06 52 PIRSF PIRSF000071 1 52 1.5E-28 T 13-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 Trebr_2317 87ef2011f03026a994a22e8a5765ca22 409 Pfam PF00375 Sodium:dicarboxylate symporter family 4 395 5.4E-32 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Trebr_2317 87ef2011f03026a994a22e8a5765ca22 409 SUPERFAMILY SSF118215 4 395 3.92E-31 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Trebr_2317 87ef2011f03026a994a22e8a5765ca22 409 Gene3D G3DSA:1.10.3860.10 1 407 3.1E-32 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Trebr_1177 bc5381d5739df987c27f93587c8d6d3e 235 Pfam PF04402 Protein of unknown function (DUF541) 34 232 7.3E-41 T 13-10-2018 IPR007497 Protein of unknown function DUF541 Trebr_1177 bc5381d5739df987c27f93587c8d6d3e 235 Gene3D G3DSA:3.30.70.2970 46 152 1.7E-54 T 13-10-2018 Trebr_1177 bc5381d5739df987c27f93587c8d6d3e 235 Gene3D G3DSA:3.30.110.170 36 233 1.7E-54 T 13-10-2018 Trebr_1169 f7a0c71498ae555c58aaa5ac1cf22616 257 PIRSF PIRSF001430 1 257 1.2E-66 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1169 f7a0c71498ae555c58aaa5ac1cf22616 257 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 251 30.707 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1169 f7a0c71498ae555c58aaa5ac1cf22616 257 Pfam PF01416 tRNA pseudouridine synthase 152 252 5.7E-18 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1169 f7a0c71498ae555c58aaa5ac1cf22616 257 Pfam PF01416 tRNA pseudouridine synthase 8 111 9.2E-9 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1169 f7a0c71498ae555c58aaa5ac1cf22616 257 Gene3D G3DSA:3.30.70.660 113 250 1.9E-36 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 Trebr_1169 f7a0c71498ae555c58aaa5ac1cf22616 257 SUPERFAMILY SSF55120 1 253 5.32E-74 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1169 f7a0c71498ae555c58aaa5ac1cf22616 257 Gene3D G3DSA:3.30.70.580 1 112 4.0E-32 T 13-10-2018 Trebr_1169 f7a0c71498ae555c58aaa5ac1cf22616 257 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 3 246 4.6E-47 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_0304 3d560ef2b8f1f32835b4c05bdab7e8fb 372 Pfam PF00534 Glycosyl transferases group 1 193 331 1.9E-25 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_0304 3d560ef2b8f1f32835b4c05bdab7e8fb 372 Gene3D G3DSA:3.40.50.2000 196 336 8.3E-30 T 13-10-2018 Trebr_0304 3d560ef2b8f1f32835b4c05bdab7e8fb 372 Pfam PF13439 Glycosyltransferase Family 4 13 188 1.9E-8 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_0304 3d560ef2b8f1f32835b4c05bdab7e8fb 372 Gene3D G3DSA:3.40.50.2000 1 195 8.9E-8 T 13-10-2018 Trebr_0304 3d560ef2b8f1f32835b4c05bdab7e8fb 372 SUPERFAMILY SSF53756 1 363 1.67E-58 T 13-10-2018 Trebr_0695 c396750151a7f4b70f8b4e8747707e35 321 Gene3D G3DSA:3.40.366.10 6 298 7.9E-79 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 Trebr_0695 c396750151a7f4b70f8b4e8747707e35 321 Pfam PF00698 Acyl transferase domain 7 241 2.4E-26 T 13-10-2018 IPR014043 Acyl transferase Trebr_0695 c396750151a7f4b70f8b4e8747707e35 321 Gene3D G3DSA:3.30.70.250 124 201 7.9E-79 T 13-10-2018 Trebr_0695 c396750151a7f4b70f8b4e8747707e35 321 SUPERFAMILY SSF55048 138 197 1.57E-13 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Trebr_0695 c396750151a7f4b70f8b4e8747707e35 321 SUPERFAMILY SSF52151 4 312 2.62E-58 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Trebr_0695 c396750151a7f4b70f8b4e8747707e35 321 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 317 1.5E-23 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain Trebr_0695 c396750151a7f4b70f8b4e8747707e35 321 PIRSF PIRSF000446 2 321 9.8E-73 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 ProSitePatterns PS01071 grpE protein signature. 161 203 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 Gene3D G3DSA:2.30.22.10 151 212 3.7E-14 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 SUPERFAMILY SSF51064 154 205 1.01E-11 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 Gene3D G3DSA:3.90.20.20 2 148 4.9E-27 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 Pfam PF01025 GrpE 47 204 9.6E-44 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 SUPERFAMILY SSF58014 56 146 2.48E-25 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 Hamap MF_01151 Protein GrpE [grpE]. 7 205 18.027 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 PRINTS PR00773 GrpE protein signature 75 91 4.5E-26 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 PRINTS PR00773 GrpE protein signature 103 118 4.5E-26 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 PRINTS PR00773 GrpE protein signature 158 173 4.5E-26 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Trebr_1498 9cde16acc4293d54e859dd672a5edf53 221 PRINTS PR00773 GrpE protein signature 184 203 4.5E-26 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 Gene3D G3DSA:3.40.50.300 275 518 4.4E-38 T 13-10-2018 Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 ProSitePatterns PS00211 ABC transporters family signature. 427 441 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 Pfam PF00005 ABC transporter 23 189 1.9E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 SMART SM00382 301 503 11.0 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 SMART SM00382 32 253 1.5E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 Pfam PF00005 ABC transporter 294 454 2.2E-13 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 Gene3D G3DSA:3.40.50.300 5 253 4.5E-51 T 13-10-2018 Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 SUPERFAMILY SSF52540 278 509 3.8E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0338 badf74f2b19b17b2e4511d2c390be401 532 SUPERFAMILY SSF52540 4 246 4.13E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 Hamap MF_01454 GTPase Obg [obg]. 3 333 43.846 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 Gene3D G3DSA:3.40.50.300 162 341 6.3E-45 T 13-10-2018 Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 4 332 1.9E-124 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 Pfam PF01018 GTP1/OBG 6 160 1.2E-53 T 13-10-2018 IPR006169 GTP1/OBG domain Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 SUPERFAMILY SSF52540 153 334 8.99E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 165 185 1.5E-30 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 214 229 1.5E-30 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 231 249 1.5E-30 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 186 204 1.5E-30 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 ProSitePatterns PS00905 GTP1/OBG family signature. 216 229 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 SUPERFAMILY SSF82051 4 160 6.28E-50 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 Gene3D G3DSA:2.70.210.12 1 161 9.3E-52 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 PIRSF PIRSF002401 1 369 1.1E-126 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type Trebr_1778 c5c5c7b5cb3536fd2f900c439caf0278 381 Pfam PF01926 50S ribosome-binding GTPase 164 284 8.0E-22 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_1555 7d86e3612dad06e417d57c1e59e2a599 254 Gene3D G3DSA:2.60.120.260 59 254 4.1E-5 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_0438 37c478f2996c7bd5ec5c0b10eed601a8 343 Gene3D G3DSA:3.90.550.10 3 250 1.3E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0438 37c478f2996c7bd5ec5c0b10eed601a8 343 Pfam PF00535 Glycosyl transferase family 2 12 170 3.4E-20 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0438 37c478f2996c7bd5ec5c0b10eed601a8 343 SUPERFAMILY SSF53448 14 226 5.38E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Gene3D G3DSA:3.30.1330.60 917 1043 8.9E-24 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Gene3D G3DSA:2.60.40.4070 489 568 1.1E-5 T 13-10-2018 Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Pfam PF00691 OmpA family 944 1031 4.9E-12 T 13-10-2018 IPR006665 OmpA-like domain Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 SUPERFAMILY SSF103088 940 1042 3.66E-21 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Gene3D G3DSA:2.60.40.4070 381 462 1.2E-7 T 13-10-2018 Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Gene3D G3DSA:2.60.40.4070 610 674 1.2E-9 T 13-10-2018 Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Gene3D G3DSA:2.60.40.4070 164 242 6.2E-12 T 13-10-2018 Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Gene3D G3DSA:2.60.40.4070 707 783 5.0E-5 T 13-10-2018 Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Pfam PF13860 FlgD Ig-like domain 623 665 2.6E-7 T 13-10-2018 IPR025965 FlgD Ig-like domain Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Pfam PF13860 FlgD Ig-like domain 501 558 9.6E-7 T 13-10-2018 IPR025965 FlgD Ig-like domain Trebr_0859 ff73893b43c8b2a5050abaf0c22bc64b 1044 Pfam PF13860 FlgD Ig-like domain 187 232 1.1E-8 T 13-10-2018 IPR025965 FlgD Ig-like domain Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 Gene3D G3DSA:2.40.50.140 11 91 1.2E-31 T 13-10-2018 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 ProSitePatterns PS00056 Ribosomal protein S17 signature. 64 76 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 Pfam PF00366 Ribosomal protein S17 18 84 2.3E-28 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 PRINTS PR00973 Ribosomal protein S17 family signature 32 55 2.2E-9 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 PRINTS PR00973 Ribosomal protein S17 family signature 64 74 2.2E-9 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 PRINTS PR00973 Ribosomal protein S17 family signature 74 81 2.2E-9 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 13 88 22.427 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 13 83 5.0E-21 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 13 83 6.0E-32 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2286 be31212c4c3cdd7bfd8ad63ee3461da2 91 SUPERFAMILY SSF50249 13 90 1.11E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_2386 7ea8b53624f0f2753a446faab6cf9226 595 SMART SM00116 532 581 45.0 T 13-10-2018 IPR000644 CBS domain Trebr_2386 7ea8b53624f0f2753a446faab6cf9226 595 SMART SM00116 468 516 0.0014 T 13-10-2018 IPR000644 CBS domain Trebr_2386 7ea8b53624f0f2753a446faab6cf9226 595 Gene3D G3DSA:1.20.1530.20 40 437 5.6E-37 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily Trebr_2386 7ea8b53624f0f2753a446faab6cf9226 595 Pfam PF00571 CBS domain 468 513 7.5E-4 T 13-10-2018 IPR000644 CBS domain Trebr_2386 7ea8b53624f0f2753a446faab6cf9226 595 Pfam PF00999 Sodium/hydrogen exchanger family 45 420 2.2E-30 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Trebr_2386 7ea8b53624f0f2753a446faab6cf9226 595 SUPERFAMILY SSF54631 468 588 1.52E-13 T 13-10-2018 Trebr_2386 7ea8b53624f0f2753a446faab6cf9226 595 Gene3D G3DSA:3.10.580.10 448 581 1.0E-10 T 13-10-2018 Trebr_1892 3033a53adcfb2d66bd54b0cfc97e214b 234 SUPERFAMILY SSF53167 2 231 1.44E-86 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Trebr_1892 3033a53adcfb2d66bd54b0cfc97e214b 234 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 233 44.782 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 Trebr_1892 3033a53adcfb2d66bd54b0cfc97e214b 234 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 230 1.1E-96 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 Trebr_1892 3033a53adcfb2d66bd54b0cfc97e214b 234 Gene3D G3DSA:3.40.50.1580 2 232 1.6E-68 T 13-10-2018 Trebr_1892 3033a53adcfb2d66bd54b0cfc97e214b 234 Pfam PF01048 Phosphorylase superfamily 15 216 2.1E-37 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Trebr_1892 3033a53adcfb2d66bd54b0cfc97e214b 234 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 Trebr_0541 e90696811e852d28c54158ada373fe09 522 SMART SM00342 428 511 1.1E-33 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0541 e90696811e852d28c54158ada373fe09 522 Pfam PF12833 Helix-turn-helix domain 435 512 2.1E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0541 e90696811e852d28c54158ada373fe09 522 Pfam PF00072 Response regulator receiver domain 4 116 2.7E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0541 e90696811e852d28c54158ada373fe09 522 SUPERFAMILY SSF46689 464 513 1.52E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0541 e90696811e852d28c54158ada373fe09 522 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 465 507 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_0541 e90696811e852d28c54158ada373fe09 522 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 480 495 5.9E-8 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0541 e90696811e852d28c54158ada373fe09 522 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 495 511 5.9E-8 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0541 e90696811e852d28c54158ada373fe09 522 Gene3D G3DSA:3.40.50.2300 2 144 8.1E-34 T 13-10-2018 Trebr_0541 e90696811e852d28c54158ada373fe09 522 Gene3D G3DSA:1.10.10.60 461 515 3.5E-20 T 13-10-2018 Trebr_0541 e90696811e852d28c54158ada373fe09 522 Gene3D G3DSA:1.10.10.60 409 460 3.5E-16 T 13-10-2018 Trebr_0541 e90696811e852d28c54158ada373fe09 522 SUPERFAMILY SSF46689 412 462 4.75E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0541 e90696811e852d28c54158ada373fe09 522 SUPERFAMILY SSF52172 1 149 1.71E-34 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0541 e90696811e852d28c54158ada373fe09 522 SMART SM00448 2 116 1.2E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0031 5546a4e2d10b5f26590ed386d15b1bcb 250 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 11 83 1.2E-13 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Trebr_0031 5546a4e2d10b5f26590ed386d15b1bcb 250 Pfam PF00588 SpoU rRNA Methylase family 102 245 2.0E-28 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Trebr_0031 5546a4e2d10b5f26590ed386d15b1bcb 250 SUPERFAMILY SSF75217 97 248 8.5E-30 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases Trebr_0031 5546a4e2d10b5f26590ed386d15b1bcb 250 Gene3D G3DSA:3.40.1280.10 92 250 3.1E-33 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Trebr_0031 5546a4e2d10b5f26590ed386d15b1bcb 250 SUPERFAMILY SSF55315 7 80 3.77E-11 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like Trebr_0031 5546a4e2d10b5f26590ed386d15b1bcb 250 SMART SM00967 10 85 1.2E-12 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Trebr_0031 5546a4e2d10b5f26590ed386d15b1bcb 250 Gene3D G3DSA:3.30.1330.30 1 81 2.5E-10 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like Trebr_0255 bded252ceeb1d12aac03d652f79d8a4c 777 Pfam PF13200 Putative glycosyl hydrolase domain 394 723 2.3E-83 T 13-10-2018 IPR025275 Putative glycosyl hydrolase domain DUF4015 Trebr_0255 bded252ceeb1d12aac03d652f79d8a4c 777 SUPERFAMILY SSF51445 410 739 2.04E-6 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0255 bded252ceeb1d12aac03d652f79d8a4c 777 SUPERFAMILY SSF110296 87 175 7.85E-8 T 13-10-2018 Trebr_0255 bded252ceeb1d12aac03d652f79d8a4c 777 Gene3D G3DSA:2.130.10.10 50 307 8.8E-8 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 SUPERFAMILY SSF52540 11 243 4.55E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 SMART SM00382 47 168 1.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 Pfam PF16193 AAA C-terminal domain 188 277 9.3E-27 T 13-10-2018 IPR032423 AAA C-terminal domain Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 Pfam PF12002 MgsA AAA+ ATPase C terminal 278 437 2.9E-60 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 Gene3D G3DSA:3.40.50.300 3 163 1.6E-43 T 13-10-2018 Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 SUPERFAMILY SSF48019 262 436 6.23E-63 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 Gene3D G3DSA:1.10.3710.10 358 446 4.2E-27 T 13-10-2018 Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 52 158 5.2E-16 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 Gene3D G3DSA:1.20.272.10 251 355 1.0E-41 T 13-10-2018 Trebr_0623 8ff001b152ee6df432e3e969c97c4588 801 Gene3D G3DSA:1.10.8.60 164 230 1.3E-18 T 13-10-2018 Trebr_1530 1f20716e78ecf58e3351aceabafa85de 187 Hamap MF_00239 Cytidylate kinase [cmk]. 11 181 37.515 T 13-10-2018 IPR011892 Cytidylate kinase, putative GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Trebr_1530 1f20716e78ecf58e3351aceabafa85de 187 TIGRFAM TIGR02173 cyt_kin_arch: putative cytidylate kinase 12 176 1.3E-37 T 13-10-2018 IPR011892 Cytidylate kinase, putative GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Trebr_1530 1f20716e78ecf58e3351aceabafa85de 187 Pfam PF13189 Cytidylate kinase-like family 13 162 1.4E-14 T 13-10-2018 Trebr_1530 1f20716e78ecf58e3351aceabafa85de 187 Gene3D G3DSA:3.40.50.300 4 182 1.5E-35 T 13-10-2018 Trebr_1530 1f20716e78ecf58e3351aceabafa85de 187 SUPERFAMILY SSF52540 8 180 2.44E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2341 f20d85d2332af03c347503a633776781 340 Pfam PF01551 Peptidase family M23 235 330 1.7E-31 T 13-10-2018 IPR016047 Peptidase M23 Trebr_2341 f20d85d2332af03c347503a633776781 340 Gene3D G3DSA:2.70.70.10 186 337 7.5E-45 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_2341 f20d85d2332af03c347503a633776781 340 SUPERFAMILY SSF51261 189 334 2.25E-50 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_2099 9247d1e5346d5d4dca2da2b99e8332f2 436 Gene3D G3DSA:3.40.640.10 3 329 7.7E-64 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_2099 9247d1e5346d5d4dca2da2b99e8332f2 436 Pfam PF00155 Aminotransferase class I and II 60 426 9.9E-22 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_2099 9247d1e5346d5d4dca2da2b99e8332f2 436 SUPERFAMILY SSF53383 29 424 1.17E-45 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_2099 9247d1e5346d5d4dca2da2b99e8332f2 436 Gene3D G3DSA:3.90.1150.10 331 433 9.1E-31 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 Pfam PF03063 Prismane/CO dehydrogenase family 5 526 7.7E-162 T 13-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 Hamap MF_00069 Hydroxylamine reductase [hcp]. 5 530 19.755 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 SUPERFAMILY SSF56821 5 529 4.19E-177 T 13-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 Gene3D G3DSA:1.20.1270.20 3 118 1.3E-28 T 13-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 Gene3D G3DSA:1.20.1270.20 125 207 1.3E-28 T 13-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 Gene3D G3DSA:3.40.50.2030 361 529 4.7E-64 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 Gene3D G3DSA:3.40.50.2030 209 360 1.2E-63 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 PIRSF PIRSF000076 5 530 4.6E-202 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Trebr_2514 28f89983ec7f812e2bc47ed9f26d9120 530 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 5 529 5.7E-208 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 SUPERFAMILY SSF48179 350 488 1.36E-44 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 24 489 36.682 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 Gene3D G3DSA:1.10.1040.10 211 493 2.4E-119 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 SUPERFAMILY SSF51735 30 211 9.36E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 361 486 5.8E-22 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 212 344 2.2E-25 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 SUPERFAMILY SSF48179 212 345 1.87E-38 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 Gene3D G3DSA:3.40.50.720 3 210 1.7E-76 T 13-10-2018 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 37 206 8.6E-56 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Trebr_1898 4f339f694e8d82eb8be219d8778af48b 494 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 37 369 3.6E-114 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 SMART SM00487 245 422 1.4E-15 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 SMART SM00490 497 574 2.4E-12 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 Pfam PF13625 Helicase conserved C-terminal domain 7 101 8.1E-35 T 13-10-2018 IPR032830 Helicase XPB/Ssl2, N-terminal domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 SUPERFAMILY SSF52540 295 591 8.89E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 Pfam PF04851 Type III restriction enzyme, res subunit 247 400 3.3E-14 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 Gene3D G3DSA:3.40.50.300 238 426 6.2E-34 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 549 574 4.0E-35 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 263 285 4.0E-35 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 530 548 4.0E-35 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 484 506 4.0E-35 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 365 385 4.0E-35 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 430 452 4.0E-35 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 5 25 4.0E-35 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 Gene3D G3DSA:3.40.50.300 427 624 2.4E-50 T 13-10-2018 Trebr_0364 e9d66641a4ac4b5728aa9c695864237e 638 Pfam PF16203 ERCC3/RAD25/XPB C-terminal helicase 426 614 3.9E-47 T 13-10-2018 IPR032438 ERCC3/RAD25/XPB helicase, C-terminal domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 144 1.0E-40 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 SUPERFAMILY SSF51735 3 146 1.46E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 Gene3D G3DSA:3.90.110.10 147 315 2.8E-60 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 PRINTS PR00086 L-lactate dehydrogenase signature 142 160 3.9E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 PRINTS PR00086 L-lactate dehydrogenase signature 32 56 3.9E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 PRINTS PR00086 L-lactate dehydrogenase signature 118 138 3.9E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 PRINTS PR00086 L-lactate dehydrogenase signature 7 31 3.9E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 PRINTS PR00086 L-lactate dehydrogenase signature 172 185 3.9E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 10 308 5.7E-111 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 174 180 - T 13-10-2018 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 SUPERFAMILY SSF56327 145 314 4.85E-53 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 312 1.8E-28 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 5 315 41.358 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 Gene3D G3DSA:3.40.50.720 1 146 8.4E-52 T 13-10-2018 Trebr_0251 628b4af8e581dbdfb504b95bcb0e070a 315 PIRSF PIRSF000102 2 315 1.1E-104 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 2 314 37.438 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 144 312 1.1E-21 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 SUPERFAMILY SSF56327 142 313 4.76E-45 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 Gene3D G3DSA:3.40.50.720 1 143 5.6E-56 T 13-10-2018 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 PRINTS PR00086 L-lactate dehydrogenase signature 4 28 5.5E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 PRINTS PR00086 L-lactate dehydrogenase signature 115 135 5.5E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 PRINTS PR00086 L-lactate dehydrogenase signature 139 157 5.5E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 5.5E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 PRINTS PR00086 L-lactate dehydrogenase signature 169 182 5.5E-41 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 SUPERFAMILY SSF51735 3 143 4.85E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 PIRSF PIRSF000102 1 315 5.0E-97 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 Gene3D G3DSA:3.90.110.10 144 315 1.1E-49 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 4 141 1.0E-41 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 Trebr_2038 14bdb12cc336217ec1699cff245a7e84 315 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 7 308 5.8E-101 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 Trebr_1360 66447684e1b40f8fd1b3e2d78dd71344 319 Pfam PF13432 Tetratricopeptide repeat 247 303 3.9E-9 T 13-10-2018 Trebr_1360 66447684e1b40f8fd1b3e2d78dd71344 319 SMART SM00028 241 274 0.019 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1360 66447684e1b40f8fd1b3e2d78dd71344 319 SMART SM00028 171 204 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1360 66447684e1b40f8fd1b3e2d78dd71344 319 SMART SM00028 275 308 7.6E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1360 66447684e1b40f8fd1b3e2d78dd71344 319 SUPERFAMILY SSF48452 206 317 4.56E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1360 66447684e1b40f8fd1b3e2d78dd71344 319 Gene3D G3DSA:1.25.40.10 51 319 2.0E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 SMART SM00283 276 509 5.4E-56 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 5.0E-30 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 5.0E-30 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 5.0E-30 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 5.0E-30 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 Gene3D G3DSA:1.10.287.950 214 511 7.4E-65 T 13-10-2018 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 335 486 3.2E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 SUPERFAMILY SSF58104 251 510 1.13E-56 T 13-10-2018 Trebr_0345 5ad5a7d5757d2b6cd3eb2d141d2c9317 536 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 174 4.1E-8 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Trebr_2467 ef107b18f1cd3079faafae5c4ab50f37 118 Pfam PF01381 Helix-turn-helix 14 61 8.8E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2467 ef107b18f1cd3079faafae5c4ab50f37 118 SUPERFAMILY SSF47413 5 66 7.42E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2467 ef107b18f1cd3079faafae5c4ab50f37 118 SMART SM00530 6 61 2.5E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2467 ef107b18f1cd3079faafae5c4ab50f37 118 Gene3D G3DSA:1.10.260.40 6 64 4.4E-7 T 13-10-2018 Trebr_2293 4dbf07ef0a571291e2e69ae7a9187db3 94 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 4 93 20.841 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Trebr_2293 4dbf07ef0a571291e2e69ae7a9187db3 94 ProSitePatterns PS00050 Ribosomal protein L23 signature. 76 91 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2293 4dbf07ef0a571291e2e69ae7a9187db3 94 SUPERFAMILY SSF54189 5 93 4.68E-29 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2293 4dbf07ef0a571291e2e69ae7a9187db3 94 Pfam PF00276 Ribosomal protein L23 5 89 7.5E-32 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Trebr_2293 4dbf07ef0a571291e2e69ae7a9187db3 94 Gene3D G3DSA:3.30.70.330 2 94 6.2E-33 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 Pfam PF00365 Phosphofructokinase 10 310 3.9E-102 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 Gene3D G3DSA:3.40.50.460 154 291 2.2E-115 T 13-10-2018 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 Gene3D G3DSA:3.40.50.450 9 335 2.2E-115 T 13-10-2018 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PIRSF PIRSF000532 5 361 7.5E-120 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 107 123 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 152 170 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 37 50 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 172 188 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 275 297 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 134 151 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 190 207 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 226 238 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 11 30 3.5E-72 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 SUPERFAMILY SSF53784 4 346 3.01E-116 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2519 1a332c61b0f26555551b9985c1e43eb1 361 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 7 360 42.311 T 13-10-2018 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Trebr_1878 d8c3608a9f03da17cbf2ac0bdfc43459 378 Pfam PF14897 EpsG family 28 335 1.0E-48 T 13-10-2018 Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 SUPERFAMILY SSF47413 3 61 6.94E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 13-10-2018 Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 Gene3D G3DSA:3.40.50.2300 64 326 6.7E-71 T 13-10-2018 Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 4.9E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 SMART SM00354 3 73 2.1E-25 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 SUPERFAMILY SSF53822 63 335 1.85E-62 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 Gene3D G3DSA:3.40.50.2300 165 331 6.7E-71 T 13-10-2018 Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 Pfam PF13377 Periplasmic binding protein-like domain 175 333 5.0E-34 T 13-10-2018 Trebr_2068 bdc10ea16ec5ca2852a640ea54ed5e02 337 Gene3D G3DSA:1.10.260.40 1 61 2.6E-18 T 13-10-2018 Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 PIRSF PIRSF036289 2 221 8.8E-22 T 13-10-2018 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 PIRSF PIRSF036289 288 786 3.1E-141 T 13-10-2018 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 Gene3D G3DSA:2.60.420.10 735 786 2.6E-12 T 13-10-2018 Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 SUPERFAMILY SSF74650 6 213 9.42E-26 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 Gene3D G3DSA:1.50.10.10 336 734 2.0E-127 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 Gene3D G3DSA:2.70.98.40 1 229 1.7E-51 T 13-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 752 783 6.7E-6 T 13-10-2018 IPR005194 Glycoside hydrolase family 65, C-terminal Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 21 212 1.1E-31 T 13-10-2018 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 341 748 1.0E-94 T 13-10-2018 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 Trebr_0191 6a2ce05334e6a11ea61154d4ffdab797 786 SUPERFAMILY SSF48208 307 784 1.7E-99 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_1142 2bc051c7c55ae45323b8581afbe72064 432 SMART SM00962 195 393 8.3E-42 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_1142 2bc051c7c55ae45323b8581afbe72064 432 SUPERFAMILY SSF52540 192 382 3.06E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1142 2bc051c7c55ae45323b8581afbe72064 432 Pfam PF00448 SRP54-type protein, GTPase domain 195 391 7.0E-38 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_1142 2bc051c7c55ae45323b8581afbe72064 432 Gene3D G3DSA:3.40.50.300 190 381 2.4E-63 T 13-10-2018 Trebr_1142 2bc051c7c55ae45323b8581afbe72064 432 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 288 2.2E-53 T 13-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 Trebr_1142 2bc051c7c55ae45323b8581afbe72064 432 Gene3D G3DSA:1.20.120.1380 139 384 2.4E-63 T 13-10-2018 Trebr_1142 2bc051c7c55ae45323b8581afbe72064 432 SMART SM00382 194 347 4.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1583 0c86f416ac42d73b406fa88a98228220 173 Gene3D G3DSA:3.30.910.20 15 173 6.2E-20 T 13-10-2018 IPR024930 Skp domain superfamily Trebr_1583 0c86f416ac42d73b406fa88a98228220 173 Pfam PF03938 Outer membrane protein (OmpH-like) 12 171 1.3E-22 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Trebr_1583 0c86f416ac42d73b406fa88a98228220 173 SMART SM00935 14 172 1.8E-18 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Trebr_1583 0c86f416ac42d73b406fa88a98228220 173 SUPERFAMILY SSF111384 24 171 7.72E-18 T 13-10-2018 Trebr_0394 b9023b207626a387104590fbf25f0fcb 226 Gene3D G3DSA:1.10.10.10 150 223 4.0E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0394 b9023b207626a387104590fbf25f0fcb 226 SUPERFAMILY SSF46785 155 224 1.94E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0394 b9023b207626a387104590fbf25f0fcb 226 SMART SM00419 170 216 3.9E-6 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Trebr_0394 b9023b207626a387104590fbf25f0fcb 226 Gene3D G3DSA:2.60.120.10 9 149 3.2E-46 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0394 b9023b207626a387104590fbf25f0fcb 226 SUPERFAMILY SSF51206 13 151 1.11E-26 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like Trebr_0394 b9023b207626a387104590fbf25f0fcb 226 Pfam PF13545 Crp-like helix-turn-helix domain 156 221 1.5E-15 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Trebr_0394 b9023b207626a387104590fbf25f0fcb 226 Pfam PF00027 Cyclic nucleotide-binding domain 35 124 3.1E-8 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 SUPERFAMILY SSF48163 336 530 5.23E-29 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 Gene3D G3DSA:1.10.10.770 332 440 7.9E-26 T 13-10-2018 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 Gene3D G3DSA:1.10.10.350 441 531 2.2E-17 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 Pfam PF01921 tRNA synthetases class I (K) 11 375 9.0E-127 T 13-10-2018 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 39 48 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 Gene3D G3DSA:1.10.10.860 284 331 2.1E-23 T 13-10-2018 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 TIGRFAM TIGR00467 lysS_arch: lysine--tRNA ligase 12 533 2.2E-162 T 13-10-2018 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 11 534 33.688 T 13-10-2018 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 Gene3D G3DSA:3.40.50.620 13 283 5.7E-93 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 SUPERFAMILY SSF52374 12 332 2.68E-58 T 13-10-2018 Trebr_0576 8a0bd9d6de037f886b8281bea1c8be17 534 Gene3D G3DSA:2.30.30.300 181 225 5.7E-93 T 13-10-2018 IPR023386 Lysine-tRNA ligase, insertion domain superfamily GO:0004824 KEGG: 00970+6.1.1.6 Trebr_0253 2a955ae417d31220dc4ce10db7333d22 509 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 10 509 29.42 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Trebr_0253 2a955ae417d31220dc4ce10db7333d22 509 Pfam PF01926 50S ribosome-binding GTPase 229 347 2.6E-22 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0253 2a955ae417d31220dc4ce10db7333d22 509 Gene3D G3DSA:3.30.1360.120 1 132 2.2E-39 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Trebr_0253 2a955ae417d31220dc4ce10db7333d22 509 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 228 366 1.2E-19 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_0253 2a955ae417d31220dc4ce10db7333d22 509 Pfam PF10396 GTP-binding protein TrmE N-terminus 11 132 1.3E-32 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 Trebr_0253 2a955ae417d31220dc4ce10db7333d22 509 SUPERFAMILY SSF52540 85 424 1.01E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0253 2a955ae417d31220dc4ce10db7333d22 509 Pfam PF12631 MnmE helical domain 135 506 4.0E-46 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 Trebr_0253 2a955ae417d31220dc4ce10db7333d22 509 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 16 371 3.6E-93 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Trebr_2529 587c8d335bf72913c30675b337e6e4d9 208 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 131 191 5.8E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_2529 587c8d335bf72913c30675b337e6e4d9 208 SUPERFAMILY SSF56784 3 199 5.63E-26 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_2529 587c8d335bf72913c30675b337e6e4d9 208 Pfam PF13419 Haloacid dehalogenase-like hydrolase 97 191 6.8E-6 T 13-10-2018 Trebr_2529 587c8d335bf72913c30675b337e6e4d9 208 Gene3D G3DSA:1.10.150.240 13 96 3.1E-29 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Trebr_2529 587c8d335bf72913c30675b337e6e4d9 208 Gene3D G3DSA:3.40.50.1000 3 198 3.1E-29 T 13-10-2018 IPR023214 HAD superfamily Trebr_1589 0d60eabd6be10ee70c99f5112b9f0150 408 PIRSF PIRSF005572 305 408 6.9E-18 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Trebr_1589 0d60eabd6be10ee70c99f5112b9f0150 408 PIRSF PIRSF005572 4 284 2.2E-83 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Trebr_1589 0d60eabd6be10ee70c99f5112b9f0150 408 Gene3D G3DSA:3.40.640.10 63 240 3.5E-104 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1589 0d60eabd6be10ee70c99f5112b9f0150 408 Gene3D G3DSA:3.90.1150.10 7 398 3.5E-104 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1589 0d60eabd6be10ee70c99f5112b9f0150 408 Gene3D G3DSA:1.10.260.50 17 298 3.5E-104 T 13-10-2018 Trebr_1589 0d60eabd6be10ee70c99f5112b9f0150 408 Pfam PF00266 Aminotransferase class-V 7 395 6.6E-53 T 13-10-2018 IPR000192 Aminotransferase class V domain Trebr_1589 0d60eabd6be10ee70c99f5112b9f0150 408 SUPERFAMILY SSF53383 7 404 3.46E-75 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1451 fec10e256e9ade484d433b80c324596d 573 Gene3D G3DSA:3.40.50.300 322 572 5.4E-86 T 13-10-2018 Trebr_1451 fec10e256e9ade484d433b80c324596d 573 SMART SM00382 355 541 2.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1451 fec10e256e9ade484d433b80c324596d 573 SUPERFAMILY SSF90123 2 312 8.37E-41 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1451 fec10e256e9ade484d433b80c324596d 573 SUPERFAMILY SSF52540 325 563 2.15E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1451 fec10e256e9ade484d433b80c324596d 573 Pfam PF00005 ABC transporter 346 493 2.7E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1451 fec10e256e9ade484d433b80c324596d 573 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1451 fec10e256e9ade484d433b80c324596d 573 Pfam PF00664 ABC transporter transmembrane region 26 279 1.0E-11 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_1451 fec10e256e9ade484d433b80c324596d 573 Gene3D G3DSA:1.20.1560.10 4 316 4.0E-29 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 PRINTS PR01009 Flagellar M-ring protein signature 274 292 5.5E-11 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 PRINTS PR01009 Flagellar M-ring protein signature 123 141 5.5E-11 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 PRINTS PR01009 Flagellar M-ring protein signature 362 386 5.5E-11 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 PRINTS PR01009 Flagellar M-ring protein signature 155 169 5.5E-11 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 PRINTS PR01009 Flagellar M-ring protein signature 200 218 5.5E-11 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 Pfam PF08345 Flagellar M-ring protein C-terminal 260 449 3.7E-22 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 Pfam PF01514 Secretory protein of YscJ/FliF family 30 224 2.7E-45 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 1 567 6.1E-113 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Trebr_0964 68dfa0f9b0e1161008361d3b57b2bb6b 568 Gene3D G3DSA:3.30.300.30 124 225 2.1E-8 T 13-10-2018 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 SMART SM00535 44 178 1.5E-46 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 SUPERFAMILY SSF69065 26 187 2.96E-45 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 32 250 1.7E-75 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 Gene3D G3DSA:3.30.160.20 184 250 4.3E-22 T 13-10-2018 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 Hamap MF_00104 Ribonuclease 3 [rnc]. 32 248 29.162 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 Pfam PF00035 Double-stranded RNA binding motif 185 249 5.0E-15 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 SUPERFAMILY SSF54768 139 251 1.73E-26 T 13-10-2018 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 Gene3D G3DSA:1.10.1520.10 29 176 3.8E-41 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 ProSitePatterns PS00517 Ribonuclease III family signature. 67 75 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 Pfam PF14622 Ribonuclease-III-like 44 172 2.2E-32 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Trebr_1413 063dcfb5eac2dd37651a103283eb922c 256 SMART SM00358 185 252 2.2E-22 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 25 302 1.9E-46 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 308 363 3.6E-13 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 PIRSF PIRSF000853 4 887 0.0 T 13-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Gene3D G3DSA:3.20.20.60 545 886 4.5E-141 T 13-10-2018 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 542 882 1.2E-86 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 456 467 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 774 792 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Gene3D G3DSA:1.10.189.10 351 532 4.8E-73 T 13-10-2018 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 SUPERFAMILY SSF56059 4 385 1.65E-143 T 13-10-2018 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 6 884 0.0 T 13-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Gene3D G3DSA:1.20.80.30 117 204 1.4E-102 T 13-10-2018 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 SUPERFAMILY SSF51621 542 882 5.02E-118 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Gene3D G3DSA:3.30.1490.20 17 249 1.4E-102 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Gene3D G3DSA:3.30.470.20 250 347 1.8E-40 T 13-10-2018 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 SUPERFAMILY SSF52009 398 514 1.19E-34 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Pfam PF00391 PEP-utilising enzyme, mobile domain 428 507 2.0E-26 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Trebr_1401 ae5a227b4e58eb2cca93307a15cc07e3 887 Gene3D G3DSA:3.50.30.10 389 509 4.8E-73 T 13-10-2018 Trebr_0165 e16b80f7c9bd0aeb9f33d9037ed82980 238 Pfam PF00072 Response regulator receiver domain 4 114 1.3E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0165 e16b80f7c9bd0aeb9f33d9037ed82980 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 235 2.3E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_0165 e16b80f7c9bd0aeb9f33d9037ed82980 238 SMART SM00862 159 235 7.6E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_0165 e16b80f7c9bd0aeb9f33d9037ed82980 238 SMART SM00448 2 113 6.2E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0165 e16b80f7c9bd0aeb9f33d9037ed82980 238 Gene3D G3DSA:3.40.50.2300 1 123 2.3E-34 T 13-10-2018 Trebr_0165 e16b80f7c9bd0aeb9f33d9037ed82980 238 Gene3D G3DSA:1.10.10.10 136 238 2.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0165 e16b80f7c9bd0aeb9f33d9037ed82980 238 SUPERFAMILY SSF46894 137 236 8.79E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_0165 e16b80f7c9bd0aeb9f33d9037ed82980 238 SUPERFAMILY SSF52172 2 128 5.41E-35 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1006 b1895631cf9ba9ea57752f6c39199ccc 221 SUPERFAMILY SSF52047 47 208 4.39E-9 T 13-10-2018 Trebr_1006 b1895631cf9ba9ea57752f6c39199ccc 221 Gene3D G3DSA:3.80.10.10 27 210 1.1E-10 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily Trebr_1377 e34d0c736bb9a614fc6709b15cf5a483 624 Pfam PF03065 Glycosyl hydrolase family 57 37 268 9.9E-19 T 13-10-2018 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 Trebr_1377 e34d0c736bb9a614fc6709b15cf5a483 624 SUPERFAMILY SSF74650 383 555 3.01E-22 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_1377 e34d0c736bb9a614fc6709b15cf5a483 624 Gene3D G3DSA:2.70.98.10 383 430 8.9E-6 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Trebr_1377 e34d0c736bb9a614fc6709b15cf5a483 624 SUPERFAMILY SSF88713 32 217 1.15E-27 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Trebr_1377 e34d0c736bb9a614fc6709b15cf5a483 624 Pfam PF09095 Domain of unknown function (DUF1926) 388 428 2.4E-5 T 13-10-2018 IPR015179 Alpha-amylase/4-alpha-glucanotransferase, C-terminal GO:0003824|GO:0005975|GO:0030246 Trebr_1377 e34d0c736bb9a614fc6709b15cf5a483 624 Pfam PF09095 Domain of unknown function (DUF1926) 464 528 1.8E-5 T 13-10-2018 IPR015179 Alpha-amylase/4-alpha-glucanotransferase, C-terminal GO:0003824|GO:0005975|GO:0030246 Trebr_1377 e34d0c736bb9a614fc6709b15cf5a483 624 Gene3D G3DSA:3.20.110.20 19 371 3.4E-60 T 13-10-2018 Trebr_0844 98edd5df6b830445c8256a9966bdd25e 825 SMART SM00729 421 637 8.8E-6 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_0844 98edd5df6b830445c8256a9966bdd25e 825 SUPERFAMILY SSF102114 399 668 9.81E-17 T 13-10-2018 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 Gene3D G3DSA:3.30.1370.10 187 294 3.0E-9 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 SMART SM00322 198 265 1.6E-9 T 13-10-2018 IPR004087 K Homology domain GO:0003676 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 Gene3D G3DSA:1.10.3210.10 315 485 3.4E-19 T 13-10-2018 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 Pfam PF12072 Domain of unknown function (DUF3552) 10 194 2.9E-46 T 13-10-2018 IPR022711 Ribonuclease Y, N-terminal Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 TIGRFAM TIGR00277 HDIG: HDIG domain 322 399 1.9E-23 T 13-10-2018 IPR006675 HDIG domain Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 SUPERFAMILY SSF109604 308 460 9.42E-33 T 13-10-2018 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 SUPERFAMILY SSF54791 203 294 7.27E-17 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 Hamap MF_00335 Ribonuclease Y [rny]. 2 510 23.816 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 12 510 7.6E-215 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 Pfam PF01966 HD domain 326 418 4.1E-21 T 13-10-2018 IPR006674 HD domain Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 Pfam PF00013 KH domain 203 259 5.8E-8 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 Trebr_0718 47c3964e21327fb2a99079ab145d1efe 510 SMART SM00471 322 428 8.3E-15 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_1504 a429d360e96c8e800a8c737cdcd555a0 430 Gene3D G3DSA:3.40.1350.30 119 262 4.0E-52 T 13-10-2018 Trebr_1504 a429d360e96c8e800a8c737cdcd555a0 430 Pfam PF01938 TRAM domain 5 53 3.2E-7 T 13-10-2018 IPR002792 TRAM domain Trebr_1504 a429d360e96c8e800a8c737cdcd555a0 430 SUPERFAMILY SSF53335 62 428 4.52E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1504 a429d360e96c8e800a8c737cdcd555a0 430 Gene3D G3DSA:3.40.50.150 74 422 4.0E-52 T 13-10-2018 Trebr_1504 a429d360e96c8e800a8c737cdcd555a0 430 Gene3D G3DSA:2.40.50.140 2 73 9.7E-23 T 13-10-2018 Trebr_1504 a429d360e96c8e800a8c737cdcd555a0 430 SUPERFAMILY SSF50249 2 60 4.34E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1504 a429d360e96c8e800a8c737cdcd555a0 430 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 355 428 8.3E-9 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 SMART SM00342 422 504 1.0E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 Gene3D G3DSA:3.40.50.2300 2 137 5.6E-28 T 13-10-2018 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 Gene3D G3DSA:1.10.10.60 403 454 4.8E-14 T 13-10-2018 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 Pfam PF00072 Response regulator receiver domain 5 111 4.9E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 SUPERFAMILY SSF46689 407 455 1.97E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 473 488 1.3E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 488 504 1.3E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 Pfam PF12833 Helix-turn-helix domain 429 504 1.2E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 459 500 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 SUPERFAMILY SSF52172 3 133 2.7E-29 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 SUPERFAMILY SSF46689 458 504 5.82E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 SMART SM00448 2 115 2.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0713 31e0253346cb293e98ba4aff4d3bc231 510 Gene3D G3DSA:1.10.10.60 455 506 5.2E-15 T 13-10-2018 Trebr_0229 9bada8918aed35695fe016440d3ff0bd 76 SUPERFAMILY SSF117916 3 75 6.28E-25 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Trebr_0229 9bada8918aed35695fe016440d3ff0bd 76 Gene3D G3DSA:3.30.300.130 1 76 4.8E-29 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Trebr_0229 9bada8918aed35695fe016440d3ff0bd 76 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 14 73 2.0E-17 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 Trebr_0229 9bada8918aed35695fe016440d3ff0bd 76 Pfam PF01106 NifU-like domain 7 72 2.8E-28 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 Trebr_1753 8a2644bc40873391627f02fbff51ece9 163 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 58 4.6E-7 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Trebr_1753 8a2644bc40873391627f02fbff51ece9 163 Gene3D G3DSA:3.10.20.30 1 73 1.0E-21 T 13-10-2018 IPR012675 Beta-grasp domain superfamily Trebr_1753 8a2644bc40873391627f02fbff51ece9 163 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Trebr_1753 8a2644bc40873391627f02fbff51ece9 163 SUPERFAMILY SSF47741 84 152 1.31E-11 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Trebr_1753 8a2644bc40873391627f02fbff51ece9 163 Pfam PF01799 [2Fe-2S] binding domain 72 143 1.6E-7 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Trebr_1753 8a2644bc40873391627f02fbff51ece9 163 SUPERFAMILY SSF54292 3 76 1.17E-16 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Trebr_1753 8a2644bc40873391627f02fbff51ece9 163 Gene3D G3DSA:1.10.150.120 74 163 3.6E-6 T 13-10-2018 Trebr_1805 01de0456ba69185d393307225c791d96 279 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 34 252 1.8E-25 T 13-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system Trebr_1805 01de0456ba69185d393307225c791d96 279 Gene3D G3DSA:3.10.450.620 23 157 1.5E-5 T 13-10-2018 Trebr_1121 43c6a6be61c88cbd568ff612a1b602b3 171 SUPERFAMILY SSF88946 11 93 1.05E-10 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1121 43c6a6be61c88cbd568ff612a1b602b3 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 160 3.3E-16 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Trebr_1121 43c6a6be61c88cbd568ff612a1b602b3 171 Pfam PF04542 Sigma-70 region 2 15 77 2.8E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1121 43c6a6be61c88cbd568ff612a1b602b3 171 Gene3D G3DSA:1.10.1740.10 3 82 1.6E-8 T 13-10-2018 Trebr_1121 43c6a6be61c88cbd568ff612a1b602b3 171 SUPERFAMILY SSF88659 109 159 9.35E-6 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1121 43c6a6be61c88cbd568ff612a1b602b3 171 Pfam PF07638 ECF sigma factor 98 161 4.0E-5 T 13-10-2018 IPR011517 RNA polymerase sigma-70 ECF-like Trebr_1121 43c6a6be61c88cbd568ff612a1b602b3 171 Gene3D G3DSA:1.10.10.10 85 165 3.4E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 Gene3D G3DSA:3.60.150.10 1 373 6.9E-145 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 Hamap MF_00300 Chorismate synthase [aroC]. 10 373 36.57 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 SUPERFAMILY SSF103263 4 370 5.36E-125 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 ProSitePatterns PS00789 Chorismate synthase signature 3. 340 356 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 Pfam PF01264 Chorismate synthase 10 366 3.9E-135 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 TIGRFAM TIGR00033 aroC: chorismate synthase 10 369 2.6E-125 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 ProSitePatterns PS00788 Chorismate synthase signature 2. 129 145 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_1941 9f94ce472aa59670d00d9c24c17d1000 374 PIRSF PIRSF001456 3 373 3.4E-136 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Trebr_2577 a4ef5a878a1c70508440d12e4c799216 426 SUPERFAMILY SSF103473 18 411 4.45E-50 T 13-10-2018 IPR036259 MFS transporter superfamily Trebr_2577 a4ef5a878a1c70508440d12e4c799216 426 Pfam PF05977 Transmembrane secretion effector 20 410 5.5E-22 T 13-10-2018 IPR010290 Transmembrane secretion effector Trebr_2577 a4ef5a878a1c70508440d12e4c799216 426 Gene3D G3DSA:1.20.1250.20 15 410 5.7E-42 T 13-10-2018 Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 SUPERFAMILY SSF52540 36 252 1.79E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 Gene3D G3DSA:3.30.300.20 220 331 1.2E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 40 199 1.1E-18 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 Pfam PF01926 50S ribosome-binding GTPase 44 138 3.4E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 Gene3D G3DSA:3.40.50.300 38 219 9.6E-39 T 13-10-2018 Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 SUPERFAMILY SSF54814 217 330 8.5E-30 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 TIGRFAM TIGR00436 era: GTP-binding protein Era 43 315 8.5E-70 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 Pfam PF07650 KH domain 243 321 1.7E-13 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2199 d177a8a86d742f1d645c8cf412ddc43a 332 Hamap MF_00367 GTPase Era [era]. 39 332 29.545 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 PRINTS PR00691 Adhesin B signature 63 81 6.2E-5 T 13-10-2018 IPR006129 Adhesin B GO:0007155 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 PRINTS PR00691 Adhesin B signature 38 59 6.2E-5 T 13-10-2018 IPR006129 Adhesin B GO:0007155 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 PRINTS PR00691 Adhesin B signature 82 101 6.2E-5 T 13-10-2018 IPR006129 Adhesin B GO:0007155 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 Gene3D G3DSA:3.40.50.1980 38 222 1.5E-55 T 13-10-2018 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 Gene3D G3DSA:3.40.50.1980 225 338 4.4E-32 T 13-10-2018 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 SUPERFAMILY SSF53807 34 337 6.38E-70 T 13-10-2018 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 Pfam PF01297 Zinc-uptake complex component A periplasmic 41 335 7.7E-76 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 PRINTS PR00690 Adhesin family signature 38 56 2.6E-7 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 PRINTS PR00690 Adhesin family signature 69 82 2.6E-7 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Trebr_1247 fd7857cda6babbd60d22e54d2560e525 338 PRINTS PR00690 Adhesin family signature 82 99 2.6E-7 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Trebr_1501 a04b3480a09324f823df58044bd23560 710 Gene3D G3DSA:3.40.50.300 275 379 9.2E-35 T 13-10-2018 Trebr_1501 a04b3480a09324f823df58044bd23560 710 Gene3D G3DSA:3.40.50.300 9 268 6.6E-89 T 13-10-2018 Trebr_1501 a04b3480a09324f823df58044bd23560 710 Gene3D G3DSA:1.10.10.160 112 184 6.6E-89 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily Trebr_1501 a04b3480a09324f823df58044bd23560 710 Pfam PF13361 UvrD-like helicase C-terminal domain 272 658 3.9E-75 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Trebr_1501 a04b3480a09324f823df58044bd23560 710 Pfam PF00580 UvrD/REP helicase N-terminal domain 9 266 4.7E-70 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Trebr_1501 a04b3480a09324f823df58044bd23560 710 Gene3D G3DSA:1.10.486.10 482 591 2.2E-12 T 13-10-2018 Trebr_1501 a04b3480a09324f823df58044bd23560 710 SUPERFAMILY SSF52540 7 684 1.2E-162 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1501 a04b3480a09324f823df58044bd23560 710 Gene3D G3DSA:1.10.486.10 380 453 1.1E-25 T 13-10-2018 Trebr_1501 a04b3480a09324f823df58044bd23560 710 Gene3D G3DSA:1.10.10.1560 607 683 1.0E-28 T 13-10-2018 Trebr_2057 b34efe849f2bf20a108436fe01107d5e 269 Gene3D G3DSA:3.90.550.10 21 200 3.5E-15 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2057 b34efe849f2bf20a108436fe01107d5e 269 SUPERFAMILY SSF53448 32 254 1.03E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2057 b34efe849f2bf20a108436fe01107d5e 269 Pfam PF00535 Glycosyl transferase family 2 43 126 2.4E-9 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0800 a352833315243ed748b376f5ff142350 270 SUPERFAMILY SSF53850 31 266 1.79E-84 T 13-10-2018 Trebr_0800 a352833315243ed748b376f5ff142350 270 Pfam PF03180 NLPA lipoprotein 31 266 3.2E-93 T 13-10-2018 IPR004872 Lipoprotein NlpA family Trebr_0800 a352833315243ed748b376f5ff142350 270 Gene3D G3DSA:3.40.190.10 31 261 7.4E-99 T 13-10-2018 Trebr_0800 a352833315243ed748b376f5ff142350 270 PIRSF PIRSF002854 1 266 4.7E-105 T 13-10-2018 IPR004872 Lipoprotein NlpA family Trebr_0800 a352833315243ed748b376f5ff142350 270 Gene3D G3DSA:3.40.190.10 112 215 7.4E-99 T 13-10-2018 Trebr_1449 851669bf12ed2223981aed736ea98424 681 Pfam PF14492 Elongation Factor G, domain II 398 471 1.5E-28 T 13-10-2018 Trebr_1449 851669bf12ed2223981aed736ea98424 681 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 174 8.1E-36 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 Gene3D G3DSA:3.40.50.300 1 281 1.2E-108 T 13-10-2018 Trebr_1449 851669bf12ed2223981aed736ea98424 681 Gene3D G3DSA:3.30.230.10 478 672 2.6E-61 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_1449 851669bf12ed2223981aed736ea98424 681 Pfam PF03144 Elongation factor Tu domain 2 318 384 3.6E-12 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site Trebr_1449 851669bf12ed2223981aed736ea98424 681 SUPERFAMILY SSF54980 396 474 2.88E-21 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_1449 851669bf12ed2223981aed736ea98424 681 SUPERFAMILY SSF52540 3 275 5.61E-102 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1449 851669bf12ed2223981aed736ea98424 681 SUPERFAMILY SSF54211 473 593 3.03E-26 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1449 851669bf12ed2223981aed736ea98424 681 Gene3D G3DSA:2.40.30.10 284 399 4.9E-35 T 13-10-2018 Trebr_1449 851669bf12ed2223981aed736ea98424 681 SMART SM00889 474 592 5.1E-24 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 Gene3D G3DSA:3.30.70.240 598 668 2.6E-61 T 13-10-2018 Trebr_1449 851669bf12ed2223981aed736ea98424 681 Pfam PF03764 Elongation factor G, domain IV 473 592 8.2E-22 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 Gene3D G3DSA:3.30.70.870 400 474 5.7E-27 T 13-10-2018 Trebr_1449 851669bf12ed2223981aed736ea98424 681 Pfam PF00679 Elongation factor G C-terminus 594 675 5.1E-26 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like Trebr_1449 851669bf12ed2223981aed736ea98424 681 Pfam PF00009 Elongation factor Tu GTP binding domain 4 275 6.8E-68 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 SMART SM00838 594 681 2.4E-32 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like Trebr_1449 851669bf12ed2223981aed736ea98424 681 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 674 6.4E-255 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_1449 851669bf12ed2223981aed736ea98424 681 Hamap MF_00054_B Elongation factor G [fusA]. 1 681 95.05 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_1449 851669bf12ed2223981aed736ea98424 681 PRINTS PR00315 GTP-binding elongation factor signature 125 134 1.3E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 PRINTS PR00315 GTP-binding elongation factor signature 89 100 1.3E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 PRINTS PR00315 GTP-binding elongation factor signature 53 61 1.3E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 PRINTS PR00315 GTP-binding elongation factor signature 73 83 1.3E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 PRINTS PR00315 GTP-binding elongation factor signature 7 20 1.3E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1449 851669bf12ed2223981aed736ea98424 681 SUPERFAMILY SSF50447 260 398 1.27E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_1449 851669bf12ed2223981aed736ea98424 681 SUPERFAMILY SSF54980 597 677 1.68E-24 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Gene3D G3DSA:3.30.70.1430 574 676 0.0 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 SUPERFAMILY SSF82693 135 331 8.37E-20 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Pfam PF00873 AcrB/AcrD/AcrF family 4 1035 2.4E-249 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Gene3D G3DSA:1.20.1640.10 10 515 0.0 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 SUPERFAMILY SSF82693 577 672 6.8E-9 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 SUPERFAMILY SSF82693 41 133 1.05E-22 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 SUPERFAMILY SSF82714 182 273 4.84E-12 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Gene3D G3DSA:3.30.2090.10 727 815 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 SUPERFAMILY SSF82866 297 498 1.03E-41 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Gene3D G3DSA:3.30.70.1320 134 333 0.0 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 SUPERFAMILY SSF82866 812 1041 7.32E-51 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 SUPERFAMILY SSF82714 728 812 1.14E-16 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Gene3D G3DSA:1.20.1640.10 520 1032 0.0 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Gene3D G3DSA:3.30.70.1430 40 823 0.0 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Gene3D G3DSA:3.30.2090.10 177 276 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 Gene3D G3DSA:3.30.70.1440 677 875 0.0 T 13-10-2018 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.2E-39 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 1.2E-39 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.2E-39 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 1.2E-39 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 1.2E-39 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 1.2E-39 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_0218 9681e5bae3866aabd46134a0cca0b448 1105 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 1.2E-39 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_2528 5b0c8a57cc6aac60a5fb102ba3b17515 288 SUPERFAMILY SSF161098 14 280 2.9E-61 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2528 5b0c8a57cc6aac60a5fb102ba3b17515 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 276 1.4E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2528 5b0c8a57cc6aac60a5fb102ba3b17515 288 Gene3D G3DSA:1.10.3720.10 6 277 1.2E-59 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0688 0eaa444695812f5994266aa31ba26020 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 285 1.3E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0688 0eaa444695812f5994266aa31ba26020 305 SUPERFAMILY SSF161098 18 304 4.67E-60 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0688 0eaa444695812f5994266aa31ba26020 305 Gene3D G3DSA:1.10.3720.10 15 292 6.0E-57 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 171 183 1.2E-27 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 93 109 1.2E-27 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 139 158 1.2E-27 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 36 49 1.2E-27 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 115 131 1.2E-27 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 Gene3D G3DSA:3.30.420.10 34 189 2.4E-47 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 SUPERFAMILY SSF53098 34 187 6.45E-44 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 33 186 40.373 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 35 187 3.6E-33 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Trebr_1535 4667d65f9bc48af84026cb019f4a2456 189 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 35 183 1.3E-45 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Trebr_1424 a14575993b1da997fb94ddab73e291d8 286 Pfam PF01148 Cytidylyltransferase family 6 281 8.3E-53 T 13-10-2018 Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 203 217 2.7E-16 T 13-10-2018 Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 313 337 2.7E-16 T 13-10-2018 Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 179 195 2.7E-16 T 13-10-2018 Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 284 296 2.7E-16 T 13-10-2018 Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 Gene3D G3DSA:3.40.50.150 157 462 1.5E-81 T 13-10-2018 Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 Gene3D G3DSA:1.20.1260.30 4 152 9.6E-32 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 Pfam PF02384 N-6 DNA Methylase 157 470 2.3E-63 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 Pfam PF12161 HsdM N-terminal domain 16 146 2.0E-7 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 287 293 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_2442 8391c8a846481d60e75e7a3166bdb96e 509 SUPERFAMILY SSF53335 7 507 1.36E-104 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 SUPERFAMILY SSF52540 509 801 1.18E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.1E-6 T 13-10-2018 IPR004176 Clp, N-terminal Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 103 142 3.8E-4 T 13-10-2018 IPR004176 Clp, N-terminal Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 SUPERFAMILY SSF81923 6 140 2.09E-18 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 SUPERFAMILY SSF52540 185 488 1.77E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 318 330 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 738 810 3.8E-23 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Gene3D G3DSA:1.10.8.60 738 841 1.9E-23 T 13-10-2018 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Gene3D G3DSA:3.40.50.300 513 737 6.0E-80 T 13-10-2018 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 609 627 8.7E-39 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 671 685 8.7E-39 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 638 656 8.7E-39 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 564 582 8.7E-39 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 SMART SM01086 738 833 1.2E-25 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Gene3D G3DSA:1.10.8.60 369 504 2.1E-40 T 13-10-2018 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Gene3D G3DSA:3.40.50.300 174 366 5.6E-71 T 13-10-2018 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 SMART SM00382 223 367 2.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 SMART SM00382 560 739 9.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Pfam PF02151 UvrB/uvrC motif 443 474 8.9E-8 T 13-10-2018 IPR001943 UVR domain GO:0005515 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Pfam PF07724 AAA domain (Cdc48 subfamily) 559 732 1.0E-49 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Gene3D G3DSA:1.10.1780.10 1 149 7.7E-23 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Gene3D G3DSA:4.10.860.10 432 490 2.1E-40 T 13-10-2018 Trebr_0998 2c4083e6acad1ef4b0db476102786c3b 860 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 228 359 2.4E-14 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 236 258 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 Gene3D G3DSA:1.10.3730.10 179 282 4.1E-39 T 13-10-2018 Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 9 280 2.6E-72 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 5 280 25.564 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 Gene3D G3DSA:3.40.50.720 1 178 4.0E-40 T 13-10-2018 Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 7 98 2.0E-17 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 SUPERFAMILY SSF51735 6 172 6.59E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 PIRSF PIRSF000193 4 283 3.7E-68 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 SUPERFAMILY SSF48179 175 282 1.87E-37 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Trebr_2187 080d4be86bb8d1a1b7d7c90d7e179492 283 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 176 280 8.5E-38 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 Gene3D G3DSA:3.90.640.10 184 257 1.8E-122 T 13-10-2018 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 Gene3D G3DSA:3.30.420.40 152 315 1.8E-122 T 13-10-2018 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 Pfam PF06723 MreB/Mbl protein 9 333 2.6E-141 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 SUPERFAMILY SSF53067 148 328 4.36E-50 T 13-10-2018 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 SUPERFAMILY SSF53067 7 144 7.77E-35 T 13-10-2018 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 7 333 1.8E-156 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 Gene3D G3DSA:3.30.420.40 11 325 1.8E-122 T 13-10-2018 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 46 64 5.4E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 185 205 5.4E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 298 324 5.4E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 130 149 5.4E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Trebr_1359 947b6367b5b2c6ff9433304e1eb0d82c 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 66 89 5.4E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 SUPERFAMILY SSF52540 3 227 2.72E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 Pfam PF00005 ABC transporter 273 429 1.0E-12 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 SUPERFAMILY SSF52540 241 491 2.17E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 Pfam PF00005 ABC transporter 22 169 4.9E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 Gene3D G3DSA:3.40.50.300 243 499 7.5E-39 T 13-10-2018 Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 SMART SM00382 29 217 1.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0067 eb7d431ee7c7d1730e76ecda1893d0f4 508 Gene3D G3DSA:3.40.50.300 2 240 2.0E-54 T 13-10-2018 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 Gene3D G3DSA:3.30.420.40 251 497 6.0E-83 T 13-10-2018 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 SUPERFAMILY SSF53067 252 493 1.44E-81 T 13-10-2018 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 493 8.2E-216 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 SUPERFAMILY SSF53067 4 252 1.3E-91 T 13-10-2018 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 PIRSF PIRSF000538 2 498 1.7E-167 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 249 1.6E-80 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 135 147 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 Hamap MF_00186 Glycerol kinase [glpK]. 2 494 56.286 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 Gene3D G3DSA:3.30.420.40 1 250 1.9E-105 T 13-10-2018 Trebr_0397 90d1ff3eb451408e0e69dea60caaf429 498 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 447 7.8E-57 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Trebr_0555 f1c0dc9c51f5b4b79e04fe1e410f592c 409 Gene3D G3DSA:3.40.630.10 46 396 7.3E-74 T 13-10-2018 Trebr_0555 f1c0dc9c51f5b4b79e04fe1e410f592c 409 SUPERFAMILY SSF53187 7 408 4.1E-55 T 13-10-2018 Trebr_0555 f1c0dc9c51f5b4b79e04fe1e410f592c 409 SUPERFAMILY SSF55031 208 319 5.83E-20 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Trebr_0555 f1c0dc9c51f5b4b79e04fe1e410f592c 409 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 28 400 5.7E-71 T 13-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase Trebr_0555 f1c0dc9c51f5b4b79e04fe1e410f592c 409 Pfam PF01546 Peptidase family M20/M25/M40 93 407 2.9E-36 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 Trebr_0555 f1c0dc9c51f5b4b79e04fe1e410f592c 409 Pfam PF07687 Peptidase dimerisation domain 202 313 1.6E-15 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain Trebr_0555 f1c0dc9c51f5b4b79e04fe1e410f592c 409 Gene3D G3DSA:3.30.70.360 206 327 7.3E-74 T 13-10-2018 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 SUPERFAMILY SSF63411 283 472 1.45E-8 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 Gene3D G3DSA:3.30.830.10 532 741 2.7E-18 T 13-10-2018 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 Pfam PF00675 Insulinase (Peptidase family M16) 59 176 1.0E-27 T 13-10-2018 IPR011765 Peptidase M16, N-terminal Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 Pfam PF05193 Peptidase M16 inactive domain 215 395 8.5E-18 T 13-10-2018 IPR007863 Peptidase M16, C-terminal Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 Pfam PF05193 Peptidase M16 inactive domain 703 876 2.7E-13 T 13-10-2018 IPR007863 Peptidase M16, C-terminal Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 SUPERFAMILY SSF63411 775 950 4.33E-13 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 76 99 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 SUPERFAMILY SSF63411 44 254 1.4E-42 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 Gene3D G3DSA:3.30.830.10 757 952 5.8E-19 T 13-10-2018 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 SUPERFAMILY SSF63411 516 742 2.2E-20 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 Gene3D G3DSA:3.30.830.10 25 267 4.4E-62 T 13-10-2018 Trebr_0221 8d74de3ad50b21925d8c3edcd8b2aaaf 953 Gene3D G3DSA:3.30.830.10 273 478 2.0E-14 T 13-10-2018 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 200 217 1.5E-10 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 303 315 1.5E-10 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 167 183 1.5E-10 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 78 97 1.5E-10 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 Hamap MF_01980 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 3 551 44.259 T 13-10-2018 IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB GO:0005524|GO:0006096|GO:0047334 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 TIGRFAM TIGR02477 PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase 7 551 6.7E-258 T 13-10-2018 IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB GO:0005524|GO:0006096|GO:0047334 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 PIRSF PIRSF005677 1 553 5.3E-249 T 13-10-2018 IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB GO:0005524|GO:0006096|GO:0047334 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 Gene3D G3DSA:3.40.50.450 11 502 3.5E-237 T 13-10-2018 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 Gene3D G3DSA:1.10.10.480 319 393 3.5E-237 T 13-10-2018 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 Pfam PF00365 Phosphofructokinase 75 322 8.6E-40 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 SUPERFAMILY SSF53784 6 550 7.85E-161 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_1112 d2a794759668e300aa5913f56df3b9b0 553 Gene3D G3DSA:3.40.50.460 221 536 3.5E-237 T 13-10-2018 Trebr_0841 44a6a235063a01dfb0a91bbee1e4594a 305 Pfam PF02153 Prephenate dehydrogenase 39 287 2.0E-47 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 Trebr_0841 44a6a235063a01dfb0a91bbee1e4594a 305 Gene3D G3DSA:1.10.3660.10 196 296 1.9E-25 T 13-10-2018 Trebr_0841 44a6a235063a01dfb0a91bbee1e4594a 305 SUPERFAMILY SSF51735 17 186 7.9E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0841 44a6a235063a01dfb0a91bbee1e4594a 305 Gene3D G3DSA:3.40.50.720 12 195 5.3E-46 T 13-10-2018 Trebr_0841 44a6a235063a01dfb0a91bbee1e4594a 305 SUPERFAMILY SSF48179 192 295 3.51E-22 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Trebr_0086 123e8c4c5a2140f89bcd4299cc20b037 238 Pfam PF13649 Methyltransferase domain 35 130 1.3E-17 T 13-10-2018 Trebr_0086 123e8c4c5a2140f89bcd4299cc20b037 238 SUPERFAMILY SSF53335 1 237 4.29E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0086 123e8c4c5a2140f89bcd4299cc20b037 238 Gene3D G3DSA:3.40.50.150 9 219 3.6E-41 T 13-10-2018 Trebr_0086 123e8c4c5a2140f89bcd4299cc20b037 238 Gene3D G3DSA:2.20.25.110 138 193 3.6E-41 T 13-10-2018 Trebr_0562 b720e719b55c8ef7608f10cc106e7bd9 293 Hamap MF_01968 NAD-dependent protein deacetylase [cobB]. 9 292 58.054 T 13-10-2018 IPR028628 Sirtuin, class U GO:0034979|GO:0051287 Trebr_0562 b720e719b55c8ef7608f10cc106e7bd9 293 Pfam PF02146 Sir2 family 25 249 8.5E-46 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 Trebr_0562 b720e719b55c8ef7608f10cc106e7bd9 293 Gene3D G3DSA:3.40.50.1220 16 290 1.5E-65 T 13-10-2018 Trebr_0562 b720e719b55c8ef7608f10cc106e7bd9 293 SUPERFAMILY SSF52467 6 291 1.47E-77 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Trebr_0562 b720e719b55c8ef7608f10cc106e7bd9 293 Gene3D G3DSA:3.30.1600.10 34 219 1.5E-65 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily Trebr_0227 1b82ae5cc73fc85c7abbf98da9a9913d 725 SUPERFAMILY SSF58104 440 662 1.31E-39 T 13-10-2018 Trebr_0227 1b82ae5cc73fc85c7abbf98da9a9913d 725 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 536 563 2.3E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0227 1b82ae5cc73fc85c7abbf98da9a9913d 725 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 459 488 2.3E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0227 1b82ae5cc73fc85c7abbf98da9a9913d 725 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 565 594 2.3E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0227 1b82ae5cc73fc85c7abbf98da9a9913d 725 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 613 642 2.3E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0227 1b82ae5cc73fc85c7abbf98da9a9913d 725 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 507 661 7.5E-27 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0227 1b82ae5cc73fc85c7abbf98da9a9913d 725 Gene3D G3DSA:1.10.287.950 423 675 3.0E-39 T 13-10-2018 Trebr_0227 1b82ae5cc73fc85c7abbf98da9a9913d 725 SMART SM00283 438 685 7.3E-20 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1091 2384c8c0d103b7b46e369d50c4e1a10d 316 SUPERFAMILY SSF52540 4 236 2.44E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1091 2384c8c0d103b7b46e369d50c4e1a10d 316 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 4 310 22.826 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Trebr_1091 2384c8c0d103b7b46e369d50c4e1a10d 316 Gene3D G3DSA:3.40.50.300 8 288 1.1E-69 T 13-10-2018 Trebr_1091 2384c8c0d103b7b46e369d50c4e1a10d 316 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 5 297 1.7E-48 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Trebr_1091 2384c8c0d103b7b46e369d50c4e1a10d 316 Gene3D G3DSA:1.10.20.140 119 187 1.1E-69 T 13-10-2018 Trebr_1091 2384c8c0d103b7b46e369d50c4e1a10d 316 SUPERFAMILY SSF52540 5 134 5.33E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1091 2384c8c0d103b7b46e369d50c4e1a10d 316 Pfam PF01715 IPP transferase 37 287 1.0E-52 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Gene3D G3DSA:2.30.30.40 581 706 4.1E-35 T 13-10-2018 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SMART SM00260 573 710 3.7E-35 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SUPERFAMILY SSF55874 397 579 1.07E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 336 394 6.2E-9 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SUPERFAMILY SSF160246 258 317 6.02E-8 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SUPERFAMILY SSF47384 336 396 3.92E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SUPERFAMILY SSF47226 2 100 1.05E-26 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Pfam PF01584 CheW-like domain 586 709 2.4E-25 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Gene3D G3DSA:1.10.287.560 335 395 2.6E-10 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 PRINTS PR00344 Bacterial sensor protein C-terminal signature 485 499 4.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 PRINTS PR00344 Bacterial sensor protein C-terminal signature 525 535 4.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 578 4.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 559 4.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Gene3D G3DSA:3.30.565.10 396 580 1.3E-55 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SMART SM00073 2 99 3.0E-27 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 443 580 2.6E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Pfam PF01627 Hpt domain 7 86 7.4E-16 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SUPERFAMILY SSF50341 580 709 3.66E-30 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SMART SM01231 335 395 4.1E-14 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Gene3D G3DSA:2.40.50.180 604 665 4.1E-35 T 13-10-2018 Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 SMART SM00387 440 581 8.5E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0105 f76c3e08abf790d035642b2fc49049a7 720 Gene3D G3DSA:1.20.120.160 2 139 2.8E-35 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_0664 dc5517ae7c5c987433a8dda1d519c5e5 83 SUPERFAMILY SSF55021 2 78 2.52E-23 T 13-10-2018 Trebr_0664 dc5517ae7c5c987433a8dda1d519c5e5 83 Gene3D G3DSA:3.30.70.1150 1 83 7.8E-31 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Trebr_0664 dc5517ae7c5c987433a8dda1d519c5e5 83 TIGRFAM TIGR03959 hyd_TM1266: putative iron-only hydrogenase system regulator 4 77 8.2E-33 T 13-10-2018 IPR023860 [FeFe]-hydrogenase system regulator TM1266 Trebr_0780 4dc2f6ecb8bd75bed6dd0093f0ee2257 432 SMART SM00471 192 327 3.9E-5 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_0780 4dc2f6ecb8bd75bed6dd0093f0ee2257 432 SUPERFAMILY SSF109604 197 354 2.64E-18 T 13-10-2018 Trebr_0780 4dc2f6ecb8bd75bed6dd0093f0ee2257 432 Gene3D G3DSA:1.10.3210.10 84 357 7.2E-46 T 13-10-2018 Trebr_0780 4dc2f6ecb8bd75bed6dd0093f0ee2257 432 Pfam PF13487 HD domain 249 309 1.6E-9 T 13-10-2018 Trebr_1647 04d9ec4a472c0e7d8e3cb6de32718997 108 SMART SM00530 7 63 2.3E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1647 04d9ec4a472c0e7d8e3cb6de32718997 108 Gene3D G3DSA:1.10.260.40 4 103 4.4E-10 T 13-10-2018 Trebr_1647 04d9ec4a472c0e7d8e3cb6de32718997 108 Pfam PF12844 Helix-turn-helix domain 6 67 4.7E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1647 04d9ec4a472c0e7d8e3cb6de32718997 108 SUPERFAMILY SSF47413 2 71 3.75E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2273 e4a3102ac649cf50f703fcabe2bf0172 121 Gene3D G3DSA:4.10.910.10 72 121 3.2E-27 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2273 e4a3102ac649cf50f703fcabe2bf0172 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2273 e4a3102ac649cf50f703fcabe2bf0172 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 25.524 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2273 e4a3102ac649cf50f703fcabe2bf0172 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 5.2E-52 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2273 e4a3102ac649cf50f703fcabe2bf0172 121 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.0E-28 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2273 e4a3102ac649cf50f703fcabe2bf0172 121 PIRSF PIRSF002134 1 121 2.3E-42 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2273 e4a3102ac649cf50f703fcabe2bf0172 121 SUPERFAMILY SSF46946 2 120 1.57E-44 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Trebr_2273 e4a3102ac649cf50f703fcabe2bf0172 121 Gene3D G3DSA:1.10.8.50 1 71 4.5E-27 T 13-10-2018 Trebr_0054 93ffcaa7076bef5176676f7881158299 507 Gene3D G3DSA:3.30.420.40 246 501 7.0E-55 T 13-10-2018 Trebr_0054 93ffcaa7076bef5176676f7881158299 507 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 321 441 7.7E-24 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Trebr_0054 93ffcaa7076bef5176676f7881158299 507 PIRSF PIRSF000538 1 492 1.2E-105 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Trebr_0054 93ffcaa7076bef5176676f7881158299 507 SUPERFAMILY SSF53067 252 482 7.77E-45 T 13-10-2018 Trebr_0054 93ffcaa7076bef5176676f7881158299 507 Gene3D G3DSA:3.30.420.40 1 245 1.6E-62 T 13-10-2018 Trebr_0054 93ffcaa7076bef5176676f7881158299 507 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 248 1.8E-53 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Trebr_0054 93ffcaa7076bef5176676f7881158299 507 SUPERFAMILY SSF53067 3 251 2.34E-54 T 13-10-2018 Trebr_0969 4821c1997687158884e3d29a8eda637d 550 Gene3D G3DSA:3.30.980.10 65 211 1.5E-19 T 13-10-2018 Trebr_0969 4821c1997687158884e3d29a8eda637d 550 SUPERFAMILY SSF52540 285 483 8.52E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0969 4821c1997687158884e3d29a8eda637d 550 SUPERFAMILY SSF55186 65 213 6.8E-28 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Trebr_0969 4821c1997687158884e3d29a8eda637d 550 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 287 484 1.8E-16 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 Trebr_0969 4821c1997687158884e3d29a8eda637d 550 Gene3D G3DSA:3.40.50.300 225 496 1.0E-54 T 13-10-2018 Trebr_0969 4821c1997687158884e3d29a8eda637d 550 SMART SM00382 284 445 2.4E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0969 4821c1997687158884e3d29a8eda637d 550 PRINTS PR00988 Uridine kinase signature 317 328 2.2E-7 T 13-10-2018 Trebr_0969 4821c1997687158884e3d29a8eda637d 550 PRINTS PR00988 Uridine kinase signature 362 377 2.2E-7 T 13-10-2018 Trebr_0969 4821c1997687158884e3d29a8eda637d 550 PRINTS PR00988 Uridine kinase signature 285 302 2.2E-7 T 13-10-2018 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 202 465 9.3E-49 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 Gene3D G3DSA:3.40.50.720 3 270 7.5E-52 T 13-10-2018 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 16 170 8.0E-23 T 13-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 Gene3D G3DSA:1.10.1040.10 273 491 4.5E-49 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 SUPERFAMILY SSF48179 274 490 1.09E-37 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 SUPERFAMILY SSF51735 13 270 1.3E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 PRINTS PR00084 Mannitol dehydrogenase signature 17 27 2.9E-5 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 PRINTS PR00084 Mannitol dehydrogenase signature 203 216 2.9E-5 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 PRINTS PR00084 Mannitol dehydrogenase signature 233 248 2.9E-5 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Trebr_0019 278faf0f6dc3a6b27988b3936d9f17d9 492 PRINTS PR00084 Mannitol dehydrogenase signature 162 175 2.9E-5 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Trebr_0821 deb5cdcea5bc5fb81ec2ad9f0b6a81cd 368 Gene3D G3DSA:3.40.50.2000 189 346 1.1E-12 T 13-10-2018 Trebr_0821 deb5cdcea5bc5fb81ec2ad9f0b6a81cd 368 Pfam PF13692 Glycosyl transferases group 1 197 321 1.3E-16 T 13-10-2018 Trebr_0821 deb5cdcea5bc5fb81ec2ad9f0b6a81cd 368 SUPERFAMILY SSF53756 1 360 1.88E-24 T 13-10-2018 Trebr_0821 deb5cdcea5bc5fb81ec2ad9f0b6a81cd 368 Gene3D G3DSA:3.40.50.2000 1 179 1.6E-5 T 13-10-2018 Trebr_1083 ab99a3d78e7e3bdf4349382dc8c57408 401 Gene3D G3DSA:3.40.50.2300 69 238 1.6E-44 T 13-10-2018 Trebr_1083 ab99a3d78e7e3bdf4349382dc8c57408 401 Pfam PF13407 Periplasmic binding protein domain 36 258 8.1E-26 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_1083 ab99a3d78e7e3bdf4349382dc8c57408 401 Gene3D G3DSA:3.40.50.2300 30 257 1.6E-44 T 13-10-2018 Trebr_1083 ab99a3d78e7e3bdf4349382dc8c57408 401 SUPERFAMILY SSF53822 16 263 3.14E-30 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_2508 6f2b1f5e42b814ffb29bb0a3cb155cd9 327 Pfam PF13975 gag-polyprotein putative aspartyl protease 206 310 1.6E-6 T 13-10-2018 Trebr_2508 6f2b1f5e42b814ffb29bb0a3cb155cd9 327 Gene3D G3DSA:2.40.70.10 81 131 5.3E-7 T 13-10-2018 IPR021109 Aspartic peptidase domain superfamily Trebr_2508 6f2b1f5e42b814ffb29bb0a3cb155cd9 327 Pfam PF13650 Aspartyl protease 88 121 2.9E-5 T 13-10-2018 Trebr_2508 6f2b1f5e42b814ffb29bb0a3cb155cd9 327 Gene3D G3DSA:2.40.70.10 190 326 3.2E-13 T 13-10-2018 IPR021109 Aspartic peptidase domain superfamily Trebr_2508 6f2b1f5e42b814ffb29bb0a3cb155cd9 327 SUPERFAMILY SSF50630 200 316 2.01E-7 T 13-10-2018 IPR021109 Aspartic peptidase domain superfamily Trebr_2508 6f2b1f5e42b814ffb29bb0a3cb155cd9 327 SUPERFAMILY SSF50630 81 120 3.1E-5 T 13-10-2018 IPR021109 Aspartic peptidase domain superfamily Trebr_0023 c5e3bab029d61edabca4bd1b378feca0 522 Gene3D G3DSA:3.40.190.10 154 506 5.9E-59 T 13-10-2018 Trebr_0023 c5e3bab029d61edabca4bd1b378feca0 522 Gene3D G3DSA:3.40.190.10 58 425 5.9E-59 T 13-10-2018 Trebr_0023 c5e3bab029d61edabca4bd1b378feca0 522 Pfam PF13416 Bacterial extracellular solute-binding protein 61 368 4.9E-15 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0023 c5e3bab029d61edabca4bd1b378feca0 522 SUPERFAMILY SSF53850 28 508 5.12E-65 T 13-10-2018 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 168 5.2E-32 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 301 374 2.2E-8 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 SMART SM00984 300 387 1.5E-14 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 378 5.7E-99 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 8.9E-26 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 Gene3D G3DSA:3.40.50.720 1 193 1.6E-55 T 13-10-2018 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 Gene3D G3DSA:3.40.50.720 222 388 1.6E-63 T 13-10-2018 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 SUPERFAMILY SSF52413 283 385 1.2E-25 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 PIRSF PIRSF000124 1 388 3.4E-129 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 SUPERFAMILY SSF48179 191 287 7.65E-30 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 Gene3D G3DSA:1.20.5.100 194 220 2.8E-19 T 13-10-2018 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 SUPERFAMILY SSF51735 1 194 4.59E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 PIRSF PIRSF500134 1 365 2.9E-114 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 Trebr_0291 c838ef7c22e499310d6af0d4695ff526 388 PIRSF PIRSF500134 341 388 1.7 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 Trebr_1730 8e5f51797e493e933c23225e260e58a1 210 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 203 1.5E-74 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Trebr_1730 8e5f51797e493e933c23225e260e58a1 210 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 202 7.2E-73 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Trebr_1730 8e5f51797e493e933c23225e260e58a1 210 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 135 157 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Trebr_1730 8e5f51797e493e933c23225e260e58a1 210 SUPERFAMILY SSF51366 4 203 5.99E-64 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Trebr_1730 8e5f51797e493e933c23225e260e58a1 210 Gene3D G3DSA:3.20.20.70 1 206 1.2E-75 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1730 8e5f51797e493e933c23225e260e58a1 210 PIRSF PIRSF001461 1 206 7.1E-81 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Trebr_1039 ee0e64548d901964bad6b82c00ad9aaa 362 Pfam PF06441 Epoxide hydrolase N terminus 2 105 2.5E-29 T 13-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 Trebr_1039 ee0e64548d901964bad6b82c00ad9aaa 362 Gene3D G3DSA:3.40.50.1820 1 362 4.4E-119 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_1039 ee0e64548d901964bad6b82c00ad9aaa 362 SUPERFAMILY SSF53474 2 359 2.76E-87 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_1039 ee0e64548d901964bad6b82c00ad9aaa 362 PRINTS PR00412 Epoxide hydrolase signature 304 320 1.0E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Trebr_1039 ee0e64548d901964bad6b82c00ad9aaa 362 PRINTS PR00412 Epoxide hydrolase signature 335 357 1.0E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Trebr_1039 ee0e64548d901964bad6b82c00ad9aaa 362 PRINTS PR00412 Epoxide hydrolase signature 97 115 1.0E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Trebr_1039 ee0e64548d901964bad6b82c00ad9aaa 362 PRINTS PR00412 Epoxide hydrolase signature 175 188 1.0E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Trebr_1039 ee0e64548d901964bad6b82c00ad9aaa 362 PIRSF PIRSF001112 1 362 2.1E-93 T 13-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 SMART SM00382 163 306 2.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 428 448 3.7E-9 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 411 428 3.7E-9 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 Gene3D G3DSA:1.10.10.60 403 449 5.9E-15 T 13-10-2018 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 Pfam PF02954 Bacterial regulatory protein, Fis family 404 445 2.1E-13 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 229 244 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 SMART SM00448 3 114 4.0E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 SUPERFAMILY SSF52540 142 386 8.8E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 Gene3D G3DSA:3.40.50.300 128 313 3.8E-68 T 13-10-2018 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 Pfam PF00158 Sigma-54 interaction domain 143 310 3.5E-70 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 Gene3D G3DSA:3.40.50.2300 4 121 8.6E-37 T 13-10-2018 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 SUPERFAMILY SSF52172 3 188 9.68E-45 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 167 180 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 SUPERFAMILY SSF46689 356 448 3.49E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 Gene3D G3DSA:1.10.8.60 314 392 9.5E-27 T 13-10-2018 Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 356 365 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Trebr_1155 18b7a907325cdfe4e9d8ac92300b8e9c 475 Pfam PF00072 Response regulator receiver domain 5 113 5.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Gene3D G3DSA:3.40.50.970 804 1185 9.9E-160 T 13-10-2018 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Gene3D G3DSA:3.40.920.10 423 631 2.6E-80 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Gene3D G3DSA:3.30.70.20 677 800 1.8E-35 T 13-10-2018 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 PIRSF PIRSF000159 1 1186 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 SUPERFAMILY SSF52518 804 1184 3.94E-126 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Pfam PF12838 4Fe-4S dicluster domain 697 765 9.5E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 6 1182 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Gene3D G3DSA:3.40.50.920 260 421 3.1E-61 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 971 1083 1.6E-12 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 270 352 1.4E-15 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Pfam PF10371 Domain of unknown function 634 686 2.9E-19 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 SMART SM00890 632 687 1.3E-22 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 433 617 1.3E-27 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 SUPERFAMILY SSF53323 424 676 5.49E-75 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 SUPERFAMILY SSF52922 260 421 1.71E-46 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 753 764 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Gene3D G3DSA:3.40.50.970 3 259 7.4E-108 T 13-10-2018 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 18 248 8.5E-83 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 SUPERFAMILY SSF54862 673 846 9.21E-22 T 13-10-2018 Trebr_2370 4d529b0c95d75af1e88f177d870db58f 1186 SUPERFAMILY SSF52518 4 259 2.94E-77 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 315 389 8.5E-30 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 319 388 2.2E-24 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 SUPERFAMILY SSF101801 316 391 9.81E-23 T 13-10-2018 IPR036429 SpoA-like superfamily Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 Gene3D G3DSA:2.30.330.10 306 396 2.1E-32 T 13-10-2018 IPR036429 SpoA-like superfamily Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 Gene3D G3DSA:3.40.1550.10 46 196 9.0E-14 T 13-10-2018 IPR028976 CheC-like superfamily Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 SUPERFAMILY SSF103039 40 154 5.62E-19 T 13-10-2018 IPR028976 CheC-like superfamily Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 PRINTS PR00956 Flagellar motor switch protein FliN signature 364 379 7.4E-27 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 PRINTS PR00956 Flagellar motor switch protein FliN signature 318 334 7.4E-27 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 PRINTS PR00956 Flagellar motor switch protein FliN signature 335 351 7.4E-27 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Trebr_1599 ccc0d7b84873abe73c5c2f9263385d4f 396 PRINTS PR00956 Flagellar motor switch protein FliN signature 351 364 7.4E-27 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Trebr_1239 a119d9950af7630cc7865f986b1fdea6 797 SUPERFAMILY SSF82866 576 792 9.29E-30 T 13-10-2018 Trebr_1239 a119d9950af7630cc7865f986b1fdea6 797 Pfam PF00873 AcrB/AcrD/AcrF family 590 786 4.0E-9 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Trebr_1239 a119d9950af7630cc7865f986b1fdea6 797 Gene3D G3DSA:1.20.1640.10 613 796 5.3E-16 T 13-10-2018 Trebr_1239 a119d9950af7630cc7865f986b1fdea6 797 Gene3D G3DSA:1.20.1640.10 204 398 4.4E-9 T 13-10-2018 Trebr_1239 a119d9950af7630cc7865f986b1fdea6 797 SUPERFAMILY SSF82866 181 390 4.19E-26 T 13-10-2018 Trebr_1239 a119d9950af7630cc7865f986b1fdea6 797 Pfam PF03176 MMPL family 160 425 1.7E-13 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Gene3D G3DSA:2.40.160.50 437 790 9.8E-16 T 13-10-2018 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Pfam PF01103 Surface antigen 467 802 7.2E-33 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Pfam PF07244 Surface antigen variable number repeat 363 435 5.2E-13 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Pfam PF07244 Surface antigen variable number repeat 191 278 1.2E-10 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Pfam PF07244 Surface antigen variable number repeat 281 358 9.9E-12 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Pfam PF07244 Surface antigen variable number repeat 113 187 4.2E-13 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Gene3D G3DSA:3.10.20.310 191 278 5.0E-17 T 13-10-2018 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Gene3D G3DSA:3.10.20.310 361 435 5.5E-20 T 13-10-2018 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 PIRSF PIRSF006076 1 805 3.6E-140 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 37 791 6.6E-147 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Gene3D G3DSA:3.10.20.310 108 189 2.0E-15 T 13-10-2018 Trebr_1584 d64530d2e8151862a2e8eee05827ebb4 808 Gene3D G3DSA:3.10.20.310 279 360 3.0E-15 T 13-10-2018 Trebr_1296 3fd4fc12aec79659a702dea25db83d1d 369 Pfam PF07238 PilZ domain 211 322 1.9E-9 T 13-10-2018 IPR009875 PilZ domain GO:0035438 Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 53 3.5E-22 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 1.3E-48 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 Gene3D G3DSA:1.20.5.710 4 55 1.2E-21 T 13-10-2018 Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 60 107 6.0E-13 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 125 4.3E-27 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 SUPERFAMILY SSF48300 5 61 3.14E-18 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 Gene3D G3DSA:3.30.1390.10 56 126 1.2E-28 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 126 25.612 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2302 d68548222bb68d7e8a71bcc1d05534e5 126 SUPERFAMILY SSF54736 54 125 2.44E-22 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Trebr_0101 56ec2c18caee2852dd240095308a43cd 165 Pfam PF01584 CheW-like domain 4 144 1.5E-26 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0101 56ec2c18caee2852dd240095308a43cd 165 SUPERFAMILY SSF50341 4 147 4.32E-29 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_0101 56ec2c18caee2852dd240095308a43cd 165 Gene3D G3DSA:2.40.50.180 23 139 2.6E-34 T 13-10-2018 Trebr_0101 56ec2c18caee2852dd240095308a43cd 165 SMART SM00260 4 144 7.4E-27 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0101 56ec2c18caee2852dd240095308a43cd 165 Gene3D G3DSA:2.30.30.40 6 138 2.6E-34 T 13-10-2018 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 Pfam PF00012 Hsp70 protein 4 597 1.5E-270 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 598 0.0 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 SUPERFAMILY SSF53067 1 180 1.87E-63 T 13-10-2018 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 Gene3D G3DSA:3.90.640.10 223 310 3.4E-156 T 13-10-2018 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 Gene3D G3DSA:1.20.1270.10 518 601 2.8E-29 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 SUPERFAMILY SSF53067 185 376 2.59E-68 T 13-10-2018 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 Gene3D G3DSA:2.60.34.10 378 517 1.2E-64 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 641 38.241 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 135 155 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 3 16 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 54 62 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 196 206 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 463 479 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 382 401 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 359 379 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 31 43 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 PRINTS PR00301 70kDa heat shock protein signature 328 344 5.3E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 SUPERFAMILY SSF100934 501 599 1.59E-20 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 SUPERFAMILY SSF100920 378 534 1.05E-62 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 Gene3D G3DSA:3.30.420.40 177 360 3.4E-156 T 13-10-2018 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 Gene3D G3DSA:3.30.420.40 5 373 3.4E-156 T 13-10-2018 Trebr_1497 86869659162ebfbea1ea2596a6e876cc 645 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 190 203 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Trebr_0807 aae6e8c0072ceebc8647a6d34cfef3c0 117 SUPERFAMILY SSF47413 4 67 7.11E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0807 aae6e8c0072ceebc8647a6d34cfef3c0 117 SMART SM00530 7 63 1.5E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0807 aae6e8c0072ceebc8647a6d34cfef3c0 117 Gene3D G3DSA:1.10.260.40 4 111 3.7E-8 T 13-10-2018 Trebr_0807 aae6e8c0072ceebc8647a6d34cfef3c0 117 Pfam PF12844 Helix-turn-helix domain 6 68 1.3E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0457 29c3bb6654c24de3a8e40afc73e15535 509 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 183 4.1E-11 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Trebr_0457 29c3bb6654c24de3a8e40afc73e15535 509 SUPERFAMILY SSF58104 239 505 2.7E-59 T 13-10-2018 Trebr_0457 29c3bb6654c24de3a8e40afc73e15535 509 Gene3D G3DSA:1.10.287.950 226 506 2.2E-66 T 13-10-2018 Trebr_0457 29c3bb6654c24de3a8e40afc73e15535 509 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 285 314 2.1E-27 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0457 29c3bb6654c24de3a8e40afc73e15535 509 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 362 389 2.1E-27 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0457 29c3bb6654c24de3a8e40afc73e15535 509 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 420 2.1E-27 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0457 29c3bb6654c24de3a8e40afc73e15535 509 SMART SM00283 271 504 1.8E-59 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0457 29c3bb6654c24de3a8e40afc73e15535 509 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 490 1.7E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0389 c231af84bab7d8eee8725bd3507b1dee 130 Pfam PF00581 Rhodanese-like domain 33 116 2.5E-17 T 13-10-2018 IPR001763 Rhodanese-like domain Trebr_0389 c231af84bab7d8eee8725bd3507b1dee 130 ProSitePatterns PS00380 Rhodanese signature 1. 56 67 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 Trebr_0389 c231af84bab7d8eee8725bd3507b1dee 130 SUPERFAMILY SSF52821 11 121 1.57E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily Trebr_0389 c231af84bab7d8eee8725bd3507b1dee 130 SMART SM00450 31 127 9.9E-23 T 13-10-2018 IPR001763 Rhodanese-like domain Trebr_0389 c231af84bab7d8eee8725bd3507b1dee 130 Gene3D G3DSA:3.40.250.10 30 130 2.5E-27 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily Trebr_2314 242e4cecbaf8e22dbe52dcaa1e6755cc 84 Gene3D G3DSA:3.40.30.10 1 80 1.4E-15 T 13-10-2018 Trebr_2314 242e4cecbaf8e22dbe52dcaa1e6755cc 84 SUPERFAMILY SSF52833 2 81 5.48E-8 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_2314 242e4cecbaf8e22dbe52dcaa1e6755cc 84 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 2 79 2.3E-7 T 13-10-2018 Trebr_2277 3d2af832e2a446cf9a1015400a4ef7bb 61 PIRSF PIRSF002211 1 61 5.3E-30 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2277 3d2af832e2a446cf9a1015400a4ef7bb 61 Gene3D G3DSA:3.30.1390.20 1 59 7.0E-27 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Trebr_2277 3d2af832e2a446cf9a1015400a4ef7bb 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 19.261 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2277 3d2af832e2a446cf9a1015400a4ef7bb 61 SUPERFAMILY SSF55129 3 60 5.76E-20 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Trebr_2277 3d2af832e2a446cf9a1015400a4ef7bb 61 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 2.5E-19 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Trebr_2277 3d2af832e2a446cf9a1015400a4ef7bb 61 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 13-10-2018 IPR018038 Ribosomal protein L30, conserved site Trebr_2277 3d2af832e2a446cf9a1015400a4ef7bb 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 6.2E-26 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1291 8f1829d3bed432a659d4eda3b8faed26 251 Gene3D G3DSA:3.40.50.300 1 242 9.2E-62 T 13-10-2018 Trebr_1291 8f1829d3bed432a659d4eda3b8faed26 251 SUPERFAMILY SSF52540 2 225 4.17E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1291 8f1829d3bed432a659d4eda3b8faed26 251 Pfam PF00005 ABC transporter 18 163 7.6E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1291 8f1829d3bed432a659d4eda3b8faed26 251 SMART SM00382 26 213 6.8E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 SUPERFAMILY SSF75138 142 252 2.35E-15 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Gene3D G3DSA:3.90.1640.10 1 89 4.3E-19 T 13-10-2018 Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Pfam PF07085 DRTGG domain 145 245 5.2E-14 T 13-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 SMART SM01131 419 544 2.6E-22 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Gene3D G3DSA:3.40.1390.20 132 248 4.3E-29 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 SUPERFAMILY SSF64182 1 543 5.55E-60 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Pfam PF01368 DHH family 4 384 2.4E-28 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 SMART SM00116 258 306 0.7 T 13-10-2018 IPR000644 CBS domain Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 SMART SM00116 76 128 1.3 T 13-10-2018 IPR000644 CBS domain Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 SUPERFAMILY SSF54631 68 303 9.54E-18 T 13-10-2018 Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Pfam PF00571 CBS domain 77 109 8.3E-4 T 13-10-2018 IPR000644 CBS domain Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Pfam PF00571 CBS domain 258 303 5.1E-6 T 13-10-2018 IPR000644 CBS domain Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Gene3D G3DSA:3.10.310.20 429 550 4.0E-26 T 13-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Pfam PF02833 DHHA2 domain 422 542 1.2E-15 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Trebr_0563 8bfeebba263cf74f05525cbbcfae7e25 550 Gene3D G3DSA:3.90.1640.10 286 426 2.6E-42 T 13-10-2018 Trebr_1345 142adba80c35e87a18880a1162930b21 470 SUPERFAMILY SSF53686 1 467 8.25E-122 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Trebr_1345 142adba80c35e87a18880a1162930b21 470 TIGRFAM TIGR00260 thrC: threonine synthase 94 372 1.6E-71 T 13-10-2018 IPR004450 Threonine synthase-like Trebr_1345 142adba80c35e87a18880a1162930b21 470 Pfam PF14821 Threonine synthase N terminus 3 81 8.6E-19 T 13-10-2018 IPR029144 Threonine synthase, N-terminal Trebr_1345 142adba80c35e87a18880a1162930b21 470 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 98 112 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Trebr_1345 142adba80c35e87a18880a1162930b21 470 Gene3D G3DSA:3.40.50.1100 104 217 1.3E-115 T 13-10-2018 Trebr_1345 142adba80c35e87a18880a1162930b21 470 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 95 375 3.6E-17 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Trebr_1345 142adba80c35e87a18880a1162930b21 470 Gene3D G3DSA:3.40.50.1100 87 373 1.3E-115 T 13-10-2018 Trebr_1345 142adba80c35e87a18880a1162930b21 470 Gene3D G3DSA:3.90.1380.10 1 85 2.3E-16 T 13-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily Trebr_1299 b67efb33198af6a52424c851ab39d587 294 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 29 286 2.1E-70 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Trebr_1299 b67efb33198af6a52424c851ab39d587 294 Pfam PF00398 Ribosomal RNA adenine dimethylase 30 288 1.3E-40 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Trebr_1299 b67efb33198af6a52424c851ab39d587 294 SUPERFAMILY SSF53335 26 290 6.35E-56 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1299 b67efb33198af6a52424c851ab39d587 294 Gene3D G3DSA:3.40.50.150 6 219 2.8E-50 T 13-10-2018 Trebr_1299 b67efb33198af6a52424c851ab39d587 294 Gene3D G3DSA:1.10.8.100 221 291 1.6E-13 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 Trebr_1299 b67efb33198af6a52424c851ab39d587 294 SMART SM00650 44 218 2.4E-53 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 Trebr_1299 b67efb33198af6a52424c851ab39d587 294 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 60 87 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 Trebr_1299 b67efb33198af6a52424c851ab39d587 294 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 28 289 43.768 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Trebr_2379 aa40019476d8f3aff41be057312f47cb 224 PIRSF PIRSF003078 2 224 8.4E-44 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Trebr_2379 aa40019476d8f3aff41be057312f47cb 224 Pfam PF02527 rRNA small subunit methyltransferase G 25 217 4.1E-37 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Trebr_2379 aa40019476d8f3aff41be057312f47cb 224 SUPERFAMILY SSF53335 19 181 2.71E-23 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_2379 aa40019476d8f3aff41be057312f47cb 224 Gene3D G3DSA:3.40.50.150 3 224 6.4E-51 T 13-10-2018 Trebr_2379 aa40019476d8f3aff41be057312f47cb 224 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 219 19.017 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Trebr_2379 aa40019476d8f3aff41be057312f47cb 224 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 220 1.8E-33 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 SUPERFAMILY SSF52172 2 130 3.42E-24 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0321 0283c2992bbdc73049888b37636f000a 277 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 9.2E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 9.2E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 Gene3D G3DSA:1.10.10.60 222 275 6.0E-21 T 13-10-2018 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 SMART SM00448 2 116 3.8E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 Pfam PF00072 Response regulator receiver domain 5 115 1.9E-17 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 SMART SM00342 189 272 5.3E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 SUPERFAMILY SSF46689 174 222 2.6E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 SUPERFAMILY SSF46689 225 274 2.78E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 Gene3D G3DSA:3.40.50.2300 2 136 7.2E-24 T 13-10-2018 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 Pfam PF12833 Helix-turn-helix domain 196 273 4.1E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 Gene3D G3DSA:1.10.10.60 172 221 2.1E-20 T 13-10-2018 Trebr_0321 0283c2992bbdc73049888b37636f000a 277 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 268 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 13-10-2018 IPR018253 DnaJ domain, conserved site Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 Pfam PF00226 DnaJ domain 3 65 1.7E-26 T 13-10-2018 IPR001623 DnaJ domain Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 SMART SM00271 2 60 2.9E-28 T 13-10-2018 IPR001623 DnaJ domain Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 SUPERFAMILY SSF46565 2 109 4.84E-32 T 13-10-2018 IPR036869 Chaperone J-domain superfamily Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 PRINTS PR00625 DnaJ domain signature 5 23 1.1E-26 T 13-10-2018 IPR001623 DnaJ domain Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 PRINTS PR00625 DnaJ domain signature 60 79 1.1E-26 T 13-10-2018 IPR001623 DnaJ domain Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 PRINTS PR00625 DnaJ domain signature 23 38 1.1E-26 T 13-10-2018 IPR001623 DnaJ domain Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 PRINTS PR00625 DnaJ domain signature 40 60 1.1E-26 T 13-10-2018 IPR001623 DnaJ domain Trebr_2091 f46ebe069abefd27769d15b72a845e53 191 Gene3D G3DSA:1.10.287.110 1 115 6.5E-32 T 13-10-2018 IPR036869 Chaperone J-domain superfamily Trebr_1832 07b5a949c9f177e624782e605364ccea 818 SMART SM00491 654 786 1.0E-34 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Trebr_1832 07b5a949c9f177e624782e605364ccea 818 Pfam PF04002 RadC-like JAB domain 61 93 3.4E-5 T 13-10-2018 IPR025657 RadC-like JAB domain Trebr_1832 07b5a949c9f177e624782e605364ccea 818 Pfam PF13307 Helicase C-terminal domain 638 799 6.0E-37 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Trebr_1832 07b5a949c9f177e624782e605364ccea 818 Gene3D G3DSA:3.40.50.300 142 391 1.5E-41 T 13-10-2018 Trebr_1832 07b5a949c9f177e624782e605364ccea 818 SUPERFAMILY SSF52540 157 780 1.26E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1832 07b5a949c9f177e624782e605364ccea 818 Pfam PF04851 Type III restriction enzyme, res subunit 142 375 2.3E-5 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Trebr_1832 07b5a949c9f177e624782e605364ccea 818 Gene3D G3DSA:3.40.50.300 627 814 1.4E-37 T 13-10-2018 Trebr_1832 07b5a949c9f177e624782e605364ccea 818 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 68 73 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site Trebr_1638 2237393e0ceb4739f9812f48e4519760 353 Gene3D G3DSA:3.90.1150.10 20 345 1.2E-70 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1638 2237393e0ceb4739f9812f48e4519760 353 Gene3D G3DSA:3.40.640.10 46 259 1.2E-70 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1638 2237393e0ceb4739f9812f48e4519760 353 Pfam PF00155 Aminotransferase class I and II 24 341 7.8E-36 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_1638 2237393e0ceb4739f9812f48e4519760 353 SUPERFAMILY SSF53383 18 347 3.44E-56 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 PRINTS PR00060 Ribosomal protein L16 signature 89 118 2.3E-33 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 PRINTS PR00060 Ribosomal protein L16 signature 43 54 2.3E-33 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 PRINTS PR00060 Ribosomal protein L16 signature 25 37 2.3E-33 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 PRINTS PR00060 Ribosomal protein L16 signature 59 88 2.3E-33 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 Gene3D G3DSA:3.90.1170.10 2 138 1.7E-51 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 Pfam PF00252 Ribosomal protein L16p/L10e 5 132 1.7E-48 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 2 135 35.824 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 SUPERFAMILY SSF54686 3 136 2.22E-52 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 83 94 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2288 65c754a160b2385f21f4bbcabbb91092 139 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 3 128 1.8E-54 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2281 ca36aa8779e97b02368ae9bc24cc631b 132 Gene3D G3DSA:3.30.1490.10 77 132 5.4E-23 T 13-10-2018 Trebr_2281 ca36aa8779e97b02368ae9bc24cc631b 132 Pfam PF00410 Ribosomal protein S8 5 132 3.2E-50 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2281 ca36aa8779e97b02368ae9bc24cc631b 132 Gene3D G3DSA:3.30.1370.30 4 76 3.2E-29 T 13-10-2018 Trebr_2281 ca36aa8779e97b02368ae9bc24cc631b 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 30.681 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2281 ca36aa8779e97b02368ae9bc24cc631b 132 SUPERFAMILY SSF56047 3 132 9.42E-44 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 Pfam PF04552 Sigma-54, DNA binding domain 318 413 9.6E-32 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 Pfam PF04552 Sigma-54, DNA binding domain 451 520 4.1E-14 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 9 54 6.9E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 Pfam PF04963 Sigma-54 factor, core binding domain 94 296 9.1E-36 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 Gene3D G3DSA:1.10.10.60 459 520 4.6E-18 T 13-10-2018 Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 501 508 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 PIRSF PIRSF000774 4 421 6.9E-90 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 PIRSF PIRSF000774 447 520 4.0E-16 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 14 412 3.6E-84 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Trebr_0449 fde68d452d9d7a23120cd25aa1633489 520 Gene3D G3DSA:1.10.10.1330 100 226 4.7E-13 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily Trebr_0590 3124bdb551a141840621f07e60cb6c74 600 SUPERFAMILY SSF55486 4 580 2.32E-104 T 13-10-2018 Trebr_0590 3124bdb551a141840621f07e60cb6c74 600 Pfam PF01432 Peptidase family M3 204 584 1.1E-68 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 Trebr_0590 3124bdb551a141840621f07e60cb6c74 600 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 9 596 1.8E-201 T 13-10-2018 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 Trebr_0590 3124bdb551a141840621f07e60cb6c74 600 Gene3D G3DSA:1.20.140.70 26 180 1.5E-36 T 13-10-2018 Trebr_0590 3124bdb551a141840621f07e60cb6c74 600 Gene3D G3DSA:1.10.1370.20 228 599 2.0E-127 T 13-10-2018 Trebr_0590 3124bdb551a141840621f07e60cb6c74 600 Pfam PF08439 Oligopeptidase F 116 184 5.8E-23 T 13-10-2018 IPR013647 Oligopeptidase F, N-terminal domain Trebr_0590 3124bdb551a141840621f07e60cb6c74 600 Gene3D G3DSA:1.10.287.830 182 226 1.2E-12 T 13-10-2018 Trebr_0705 0f5addba8fdd0d02ddaec979c5e94dbe 3573 Pfam PF13860 FlgD Ig-like domain 3499 3559 3.9E-10 T 13-10-2018 IPR025965 FlgD Ig-like domain Trebr_0705 0f5addba8fdd0d02ddaec979c5e94dbe 3573 Gene3D G3DSA:2.60.40.4070 3489 3568 1.0E-11 T 13-10-2018 Trebr_1443 22680e45837b5881ed24e3f6f033bdd2 405 SUPERFAMILY SSF48208 12 399 2.72E-82 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_1443 22680e45837b5881ed24e3f6f033bdd2 405 Gene3D G3DSA:1.50.10.10 2 405 9.3E-132 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_1443 22680e45837b5881ed24e3f6f033bdd2 405 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 35 378 3.5E-50 T 13-10-2018 Trebr_2097 16b9210d108dfdb77609d31444620842 300 Gene3D G3DSA:3.40.50.410 78 251 2.9E-9 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_2097 16b9210d108dfdb77609d31444620842 300 SUPERFAMILY SSF53300 78 219 7.05E-12 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_2097 16b9210d108dfdb77609d31444620842 300 Pfam PF01882 Protein of unknown function DUF58 42 126 5.6E-22 T 13-10-2018 IPR002881 Domain of unknown function DUF58 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 SUPERFAMILY SSF46548 7 130 3.5E-26 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 Gene3D G3DSA:1.10.1060.10 1 119 1.2E-36 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 SUPERFAMILY SSF51971 121 354 1.18E-52 T 13-10-2018 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 Gene3D G3DSA:3.50.50.60 256 353 3.3E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0847 2096c1cdb0631937070c46889343a17a 430 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 121 411 2.6E-29 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 Gene3D G3DSA:3.50.50.60 354 417 3.3E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0847 2096c1cdb0631937070c46889343a17a 430 Gene3D G3DSA:3.50.50.60 120 240 6.1E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0847 2096c1cdb0631937070c46889343a17a 430 PRINTS PR00419 Adrenodoxin reductase family signature 262 276 2.3E-18 T 13-10-2018 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 PRINTS PR00419 Adrenodoxin reductase family signature 186 196 2.3E-18 T 13-10-2018 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 PRINTS PR00419 Adrenodoxin reductase family signature 121 143 2.3E-18 T 13-10-2018 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 PRINTS PR00419 Adrenodoxin reductase family signature 144 157 2.3E-18 T 13-10-2018 Trebr_0847 2096c1cdb0631937070c46889343a17a 430 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 7 107 2.9E-35 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 483 622 5.9E-20 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Pfam PF00696 Amino acid kinase family 4 288 3.2E-30 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Gene3D G3DSA:3.40.50.720 477 827 1.8E-112 T 13-10-2018 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Gene3D G3DSA:3.40.1160.10 4 303 3.2E-71 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Gene3D G3DSA:1.20.120.1320 41 142 3.2E-71 T 13-10-2018 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Pfam PF13840 ACT domain 325 386 1.3E-8 T 13-10-2018 IPR027795 CASTOR, ACT domain Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Pfam PF13840 ACT domain 403 465 4.2E-7 T 13-10-2018 IPR027795 CASTOR, ACT domain Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Gene3D G3DSA:3.30.360.10 641 811 1.8E-112 T 13-10-2018 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 SUPERFAMILY SSF55021 315 392 2.54E-19 T 13-10-2018 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Pfam PF00742 Homoserine dehydrogenase 630 826 1.2E-47 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 SUPERFAMILY SSF55347 630 813 1.24E-47 T 13-10-2018 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 4 471 2.5E-98 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 PIRSF PIRSF000727 1 833 7.5E-272 T 13-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 Gene3D G3DSA:3.30.2130.10 312 475 4.2E-46 T 13-10-2018 Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 SUPERFAMILY SSF53633 2 305 4.66E-51 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 SUPERFAMILY SSF51735 475 651 2.36E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1280 70ed5ae332bb0cac35ff294949e0f311 835 SUPERFAMILY SSF55021 394 477 5.49E-21 T 13-10-2018 Trebr_0997 08109b4bfe1dcca068d84ce383f17770 382 Gene3D G3DSA:3.30.590.10 11 283 9.7E-47 T 13-10-2018 Trebr_0997 08109b4bfe1dcca068d84ce383f17770 382 SUPERFAMILY SSF55931 11 281 3.08E-42 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Trebr_0997 08109b4bfe1dcca068d84ce383f17770 382 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 53 269 9.3E-26 T 13-10-2018 IPR022414 ATP:guanido phosphotransferase, catalytic domain GO:0016301|GO:0016772 Reactome: R-HSA-71288 Trebr_0140 101c0f2fb2b7e9ed1f4cc62bc1482417 429 PIRSF PIRSF006054 3 429 8.1E-124 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 Trebr_0140 101c0f2fb2b7e9ed1f4cc62bc1482417 429 Pfam PF03313 Serine dehydratase alpha chain 90 423 1.4E-59 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit Trebr_0140 101c0f2fb2b7e9ed1f4cc62bc1482417 429 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 7 428 32.488 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 Trebr_1789 9e5cdc058264c40c43a7492495d8f08e 596 SMART SM00382 381 573 4.4E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1789 9e5cdc058264c40c43a7492495d8f08e 596 SUPERFAMILY SSF52540 349 591 1.6E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1789 9e5cdc058264c40c43a7492495d8f08e 596 Gene3D G3DSA:3.40.50.300 345 595 5.3E-79 T 13-10-2018 Trebr_1789 9e5cdc058264c40c43a7492495d8f08e 596 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1789 9e5cdc058264c40c43a7492495d8f08e 596 Pfam PF00664 ABC transporter transmembrane region 25 290 4.9E-46 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_1789 9e5cdc058264c40c43a7492495d8f08e 596 Gene3D G3DSA:1.20.1560.10 2 318 2.6E-91 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1789 9e5cdc058264c40c43a7492495d8f08e 596 Pfam PF00005 ABC transporter 372 521 2.7E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1789 9e5cdc058264c40c43a7492495d8f08e 596 SUPERFAMILY SSF90123 12 325 4.97E-78 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 SMART SM00534 605 790 7.1E-115 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 SMART SM00533 285 588 1.8E-77 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Pfam PF05192 MutS domain III 271 556 2.2E-35 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 SUPERFAMILY SSF53150 106 267 4.05E-31 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Gene3D G3DSA:3.40.50.300 567 813 9.2E-95 T 13-10-2018 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Gene3D G3DSA:1.10.1420.10 397 532 4.1E-80 T 13-10-2018 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 686 702 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Pfam PF05190 MutS family domain IV 427 515 1.8E-22 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 5 872 1.2E-254 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 4 866 22.765 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Gene3D G3DSA:1.10.1420.10 267 556 4.1E-80 T 13-10-2018 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 PIRSF PIRSF037677 1 816 2.1E-149 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Pfam PF05188 MutS domain II 120 253 1.3E-15 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Pfam PF00488 MutS domain V 609 792 1.6E-81 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Gene3D G3DSA:3.30.420.110 119 263 2.4E-30 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 SUPERFAMILY SSF52540 564 792 1.79E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Gene3D G3DSA:3.40.1170.10 1 113 2.3E-40 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 SUPERFAMILY SSF55271 3 107 3.4E-36 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 Pfam PF01624 MutS domain I 5 111 9.8E-36 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Trebr_1582 a164d9910a46e022fb6cccfe1f5bcb8d 877 SUPERFAMILY SSF48334 268 561 1.7E-70 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 SUPERFAMILY SSF48179 188 348 1.0E-35 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 SUPERFAMILY SSF51735 5 183 3.79E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 Gene3D G3DSA:3.40.50.720 1 195 1.3E-47 T 13-10-2018 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 188 343 7.9E-39 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 5 168 4.3E-38 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 PIRSF PIRSF000114 1 349 9.2E-91 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 211 235 8.1E-28 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 141 161 8.1E-28 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 58 85 8.1E-28 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 8 25 8.1E-28 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 181 205 8.1E-28 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 252 269 8.1E-28 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 4 345 28.81 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Trebr_1078 a8ddf2dc85e0ab61afd0ca8ce93210c0 349 Gene3D G3DSA:1.10.1040.10 197 349 5.1E-36 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Trebr_0452 01bc679e71569d9e024877d21c24ab72 346 Gene3D G3DSA:3.40.50.2300 164 303 1.4E-54 T 13-10-2018 Trebr_0452 01bc679e71569d9e024877d21c24ab72 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 5.8E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0452 01bc679e71569d9e024877d21c24ab72 346 Gene3D G3DSA:3.40.50.2300 61 320 1.4E-54 T 13-10-2018 Trebr_0452 01bc679e71569d9e024877d21c24ab72 346 Pfam PF13377 Periplasmic binding protein-like domain 173 324 9.0E-26 T 13-10-2018 Trebr_0452 01bc679e71569d9e024877d21c24ab72 346 SMART SM00354 6 76 8.7E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0452 01bc679e71569d9e024877d21c24ab72 346 SUPERFAMILY SSF47413 6 64 1.13E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0452 01bc679e71569d9e024877d21c24ab72 346 SUPERFAMILY SSF53822 66 342 4.54E-45 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0452 01bc679e71569d9e024877d21c24ab72 346 Gene3D G3DSA:1.10.260.40 1 60 2.9E-19 T 13-10-2018 Trebr_2027 0a12a25c7ef1cef89c0ed9eff68e33df 398 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 237 382 1.2E-28 T 13-10-2018 IPR006512 YidE/YbjL duplication Trebr_2027 0a12a25c7ef1cef89c0ed9eff68e33df 398 Pfam PF06826 Predicted Permease Membrane Region 18 192 4.1E-27 T 13-10-2018 IPR006512 YidE/YbjL duplication Trebr_2027 0a12a25c7ef1cef89c0ed9eff68e33df 398 Pfam PF06826 Predicted Permease Membrane Region 232 394 2.1E-34 T 13-10-2018 IPR006512 YidE/YbjL duplication Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 167 6.4E-55 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 469 488 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 432 576 1.6E-43 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 Gene3D G3DSA:3.40.50.970 405 602 3.8E-55 T 13-10-2018 Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 SUPERFAMILY SSF52518 424 600 2.32E-55 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 SUPERFAMILY SSF52518 1 177 1.09E-56 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 Gene3D G3DSA:3.40.50.1220 194 371 8.1E-48 T 13-10-2018 Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 333 2.2E-36 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 SUPERFAMILY SSF52467 196 344 3.85E-47 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Trebr_0728 a5100ada28a0892d94b2a33c7a5dd174 603 Gene3D G3DSA:3.40.50.970 1 174 3.0E-65 T 13-10-2018 Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 SUPERFAMILY SSF51735 3 256 3.2E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 7.6E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 7.6E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.6E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 7.6E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 7.6E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PIRSF PIRSF000126 1 264 2.3E-57 T 13-10-2018 Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 Pfam PF00106 short chain dehydrogenase 4 196 1.6E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.8E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.8E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 1.8E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0788 e9aa28b04fa7876d8dc891562ab29cd1 265 Gene3D G3DSA:3.40.50.720 1 258 3.3E-54 T 13-10-2018 Trebr_1760 ee25ed095e5038be9f581d144985774c 426 SUPERFAMILY SSF53448 3 385 4.46E-76 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1760 ee25ed095e5038be9f581d144985774c 426 Pfam PF00483 Nucleotidyl transferase 6 269 3.2E-63 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Trebr_1760 ee25ed095e5038be9f581d144985774c 426 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 10 29 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Trebr_1760 ee25ed095e5038be9f581d144985774c 426 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 96 104 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Trebr_1760 ee25ed095e5038be9f581d144985774c 426 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 206 216 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Trebr_1760 ee25ed095e5038be9f581d144985774c 426 Gene3D G3DSA:2.160.10.10 290 426 1.1E-37 T 13-10-2018 Trebr_1760 ee25ed095e5038be9f581d144985774c 426 Gene3D G3DSA:3.90.550.10 1 289 1.0E-92 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1760 ee25ed095e5038be9f581d144985774c 426 SUPERFAMILY SSF51161 288 426 4.6E-18 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily Trebr_1760 ee25ed095e5038be9f581d144985774c 426 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 4 388 1.7E-136 T 13-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 235 256 1.7E-22 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 204 222 1.7E-22 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 1.7E-22 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 1.7E-22 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 SUPERFAMILY SSF52374 3 337 1.94E-80 T 13-10-2018 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 Gene3D G3DSA:1.20.120.1910 330 497 2.4E-35 T 13-10-2018 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 SUPERFAMILY SSF47323 367 496 6.02E-25 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 496 5.8E-145 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 336 8.9E-95 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 Gene3D G3DSA:3.40.50.620 1 328 7.6E-129 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1462 212408ed32e6e23b7bdc117b7431f4f4 497 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 497 34.95 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Trebr_1595 20535af85779b97740c687824a3abcb2 284 SUPERFAMILY SSF54106 93 138 5.75E-12 T 13-10-2018 Trebr_1595 20535af85779b97740c687824a3abcb2 284 Pfam PF01551 Peptidase family M23 185 278 9.6E-19 T 13-10-2018 IPR016047 Peptidase M23 Trebr_1595 20535af85779b97740c687824a3abcb2 284 SUPERFAMILY SSF51261 153 279 3.53E-20 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_1595 20535af85779b97740c687824a3abcb2 284 SMART SM00257 93 137 2.7E-17 T 13-10-2018 IPR018392 LysM domain Trebr_1595 20535af85779b97740c687824a3abcb2 284 SMART SM00257 24 68 1.3E-13 T 13-10-2018 IPR018392 LysM domain Trebr_1595 20535af85779b97740c687824a3abcb2 284 SUPERFAMILY SSF54106 23 68 7.46E-11 T 13-10-2018 Trebr_1595 20535af85779b97740c687824a3abcb2 284 Pfam PF01476 LysM domain 25 68 3.4E-14 T 13-10-2018 IPR018392 LysM domain Trebr_1595 20535af85779b97740c687824a3abcb2 284 Pfam PF01476 LysM domain 94 137 4.5E-16 T 13-10-2018 IPR018392 LysM domain Trebr_1595 20535af85779b97740c687824a3abcb2 284 Gene3D G3DSA:3.10.350.10 16 78 1.4E-17 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_1595 20535af85779b97740c687824a3abcb2 284 Gene3D G3DSA:3.10.350.10 79 143 7.3E-18 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_1595 20535af85779b97740c687824a3abcb2 284 Gene3D G3DSA:2.70.70.10 156 281 9.4E-21 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 Hamap MF_00942 Endonuclease III [nth]. 17 232 36.994 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 ProSitePatterns PS01155 Endonuclease III family signature. 125 154 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 Pfam PF00633 Helix-hairpin-helix motif 122 150 6.4E-12 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 Gene3D G3DSA:1.10.1670.10 34 226 1.3E-73 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 Gene3D G3DSA:1.10.340.30 44 155 1.3E-73 T 13-10-2018 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 PIRSF PIRSF001435 27 235 2.6E-48 T 13-10-2018 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 SUPERFAMILY SSF48150 25 227 1.29E-70 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 SMART SM00525 209 229 0.003 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 210 226 1.1E-6 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 TIGRFAM TIGR01083 nth: endonuclease III 28 217 1.4E-77 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 57 187 6.2E-21 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 SMART SM00478 61 208 2.9E-58 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Trebr_0347 b2b29ea60da3f33c19b62a86a67aec31 235 SMART SM00278 132 151 0.0017 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 SMART SM00421 160 217 3.7E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 SMART SM00448 9 123 2.7E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 SUPERFAMILY SSF46894 150 221 8.16E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 162 217 1.6E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 205 1.1E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 193 1.1E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 177 1.1E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 Gene3D G3DSA:3.40.50.12740 10 221 3.1E-64 T 13-10-2018 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 ProSitePatterns PS00622 LuxR-type HTH domain signature. 177 204 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 Pfam PF00072 Response regulator receiver domain 11 124 2.9E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0123 0b6d9f39cd5263a42a00f828c81a4f7c 225 SUPERFAMILY SSF52172 9 139 4.7E-34 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_2502 18e235a6b0b0b7256ba72cbbee83eb4a 244 Gene3D G3DSA:3.40.1010.10 1 110 3.6E-40 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Trebr_2502 18e235a6b0b0b7256ba72cbbee83eb4a 244 PIRSF PIRSF005917 1 243 1.1E-87 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Trebr_2502 18e235a6b0b0b7256ba72cbbee83eb4a 244 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 81 92 - T 13-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 Trebr_2502 18e235a6b0b0b7256ba72cbbee83eb4a 244 Gene3D G3DSA:3.30.950.10 111 228 2.4E-27 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Trebr_2502 18e235a6b0b0b7256ba72cbbee83eb4a 244 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 202 1.4E-29 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Trebr_2502 18e235a6b0b0b7256ba72cbbee83eb4a 244 SUPERFAMILY SSF53790 2 219 1.96E-66 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Trebr_2502 18e235a6b0b0b7256ba72cbbee83eb4a 244 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 4 232 6.4E-59 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Trebr_2502 18e235a6b0b0b7256ba72cbbee83eb4a 244 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 3 222 33.96 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 SMART SM00433 43 601 4.0E-163 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 Gene3D G3DSA:3.30.565.10 13 212 2.5E-50 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR01159 DNA gyrase subunit B signature 290 306 4.5E-8 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR01159 DNA gyrase subunit B signature 9 19 4.5E-8 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR01159 DNA gyrase subunit B signature 577 593 4.5E-8 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR01159 DNA gyrase subunit B signature 338 352 4.5E-8 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 Pfam PF01751 Toprim domain 402 507 3.7E-10 T 13-10-2018 IPR006171 TOPRIM domain Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 ProSitePatterns PS00177 DNA topoisomerase II signature. 404 412 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 Gene3D G3DSA:3.40.50.670 378 606 6.9E-57 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 43 58 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 77 90 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 255 268 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 502 514 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 542 558 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 482 499 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 464 480 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 402 416 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 PRINTS PR00418 DNA topoisomerase II family signature 112 126 4.0E-47 T 13-10-2018 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 SUPERFAMILY SSF56719 378 599 2.43E-53 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 SUPERFAMILY SSF55874 9 208 2.13E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 SUPERFAMILY SSF54211 227 367 1.31E-35 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 Pfam PF00204 DNA gyrase B 237 366 1.1E-31 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 41 130 1.3E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0881 cca541b8485bb5240e39cda53b08c321 606 Gene3D G3DSA:3.30.230.10 222 370 7.0E-39 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_1233 561d4f18ff4f4b3f663110204cc0536c 305 Pfam PF13407 Periplasmic binding protein domain 38 286 2.1E-46 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_1233 561d4f18ff4f4b3f663110204cc0536c 305 Gene3D G3DSA:3.40.50.2300 134 303 2.4E-62 T 13-10-2018 Trebr_1233 561d4f18ff4f4b3f663110204cc0536c 305 Gene3D G3DSA:3.40.50.2300 41 296 2.4E-62 T 13-10-2018 Trebr_1233 561d4f18ff4f4b3f663110204cc0536c 305 SUPERFAMILY SSF53822 30 303 1.04E-52 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_1253 387d2cc94540c7241858a5be28d73fe2 381 Pfam PF03739 Predicted permease YjgP/YjgQ family 20 374 5.9E-71 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 Gene3D G3DSA:3.50.50.60 5 302 7.0E-75 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 305 2.6E-45 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 1.4E-18 T 13-10-2018 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 1.4E-18 T 13-10-2018 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.4E-18 T 13-10-2018 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 1.4E-18 T 13-10-2018 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 SUPERFAMILY SSF51905 2 200 4.13E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 SUPERFAMILY SSF51905 155 318 6.05E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 Gene3D G3DSA:3.50.50.60 118 249 7.0E-75 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 8.3E-10 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 8.3E-10 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 150 174 8.3E-10 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_1116 13d4546d6cc2fb62732e3c1c635a82a3 426 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 8.3E-10 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2490 b1f1162dcffc159d1d4f662292ee9f62 626 Pfam PF02310 B12 binding domain 10 114 2.5E-9 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Trebr_2490 b1f1162dcffc159d1d4f662292ee9f62 626 Pfam PF04055 Radical SAM superfamily 238 395 3.6E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_2490 b1f1162dcffc159d1d4f662292ee9f62 626 SUPERFAMILY SSF102114 227 424 4.84E-43 T 13-10-2018 Trebr_2490 b1f1162dcffc159d1d4f662292ee9f62 626 SMART SM00729 232 437 2.3E-34 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_2490 b1f1162dcffc159d1d4f662292ee9f62 626 Gene3D G3DSA:3.80.30.20 234 437 6.2E-25 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Trebr_0673 e3ef625c1b0583e8de9b386cb1662159 347 Gene3D G3DSA:3.30.460.20 2 124 8.2E-17 T 13-10-2018 Trebr_0673 e3ef625c1b0583e8de9b386cb1662159 347 Gene3D G3DSA:1.20.58.340 257 312 3.7E-7 T 13-10-2018 Trebr_0673 e3ef625c1b0583e8de9b386cb1662159 347 Gene3D G3DSA:1.20.58.340 132 255 3.0E-24 T 13-10-2018 Trebr_0673 e3ef625c1b0583e8de9b386cb1662159 347 Pfam PF01544 CorA-like Mg2+ transporter protein 24 304 9.9E-53 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Trebr_0673 e3ef625c1b0583e8de9b386cb1662159 347 SUPERFAMILY SSF143865 1 248 2.88E-42 T 13-10-2018 Trebr_0673 e3ef625c1b0583e8de9b386cb1662159 347 SUPERFAMILY SSF144083 249 304 3.14E-13 T 13-10-2018 Trebr_1992 46ca75b34f35c6146ffb6f88a8d2be89 624 SUPERFAMILY SSF48452 288 397 3.49E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1992 46ca75b34f35c6146ffb6f88a8d2be89 624 Gene3D G3DSA:1.25.40.10 63 255 3.3E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1992 46ca75b34f35c6146ffb6f88a8d2be89 624 SUPERFAMILY SSF48452 160 343 1.33E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1992 46ca75b34f35c6146ffb6f88a8d2be89 624 Gene3D G3DSA:1.25.40.10 273 446 2.8E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0192 a36a05e711d09f5ce82d54b098cc157a 211 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 189 1.4E-27 T 13-10-2018 Trebr_0192 a36a05e711d09f5ce82d54b098cc157a 211 Gene3D G3DSA:3.40.50.1000 5 192 5.5E-64 T 13-10-2018 IPR023214 HAD superfamily Trebr_0192 a36a05e711d09f5ce82d54b098cc157a 211 Gene3D G3DSA:1.10.150.240 17 93 5.5E-64 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Trebr_0192 a36a05e711d09f5ce82d54b098cc157a 211 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 4 189 1.1E-56 T 13-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase Trebr_0192 a36a05e711d09f5ce82d54b098cc157a 211 TIGRFAM TIGR01990 bPGM: beta-phosphoglucomutase 4 190 6.9E-67 T 13-10-2018 IPR010972 Beta-phosphoglucomutase GO:0000287|GO:0005975|GO:0008801 KEGG: 00500+5.4.2.6|MetaCyc: PWY-2721|MetaCyc: PWY-2722|MetaCyc: PWY-7459 Trebr_0192 a36a05e711d09f5ce82d54b098cc157a 211 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 189 4.2E-14 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_0192 a36a05e711d09f5ce82d54b098cc157a 211 SUPERFAMILY SSF56784 3 210 1.1E-50 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_1790 cbf6cb27c08ebf9a23c125e1e163ed0c 639 ProSitePatterns PS00211 ABC transporters family signature. 537 551 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1790 cbf6cb27c08ebf9a23c125e1e163ed0c 639 Gene3D G3DSA:3.40.50.300 398 632 7.0E-93 T 13-10-2018 Trebr_1790 cbf6cb27c08ebf9a23c125e1e163ed0c 639 Gene3D G3DSA:1.20.1560.10 12 347 9.1E-90 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1790 cbf6cb27c08ebf9a23c125e1e163ed0c 639 Pfam PF00664 ABC transporter transmembrane region 41 315 1.0E-48 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_1790 cbf6cb27c08ebf9a23c125e1e163ed0c 639 SUPERFAMILY SSF90123 22 341 3.01E-77 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1790 cbf6cb27c08ebf9a23c125e1e163ed0c 639 SMART SM00382 425 611 1.1E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1790 cbf6cb27c08ebf9a23c125e1e163ed0c 639 SUPERFAMILY SSF52540 389 633 5.86E-88 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1790 cbf6cb27c08ebf9a23c125e1e163ed0c 639 Pfam PF00005 ABC transporter 416 565 1.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0514 98b5ce0f9772ff421f34d6d50bf92323 337 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 26 98 2.8E-13 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0514 98b5ce0f9772ff421f34d6d50bf92323 337 Gene3D G3DSA:3.30.450.20 218 337 2.0E-12 T 13-10-2018 Trebr_0514 98b5ce0f9772ff421f34d6d50bf92323 337 SUPERFAMILY SSF103190 131 249 7.85E-10 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Trebr_0514 98b5ce0f9772ff421f34d6d50bf92323 337 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 32 59 7.3E-7 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0514 98b5ce0f9772ff421f34d6d50bf92323 337 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 61 90 7.3E-7 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0514 98b5ce0f9772ff421f34d6d50bf92323 337 Gene3D G3DSA:1.10.287.950 2 160 5.8E-19 T 13-10-2018 Trebr_0514 98b5ce0f9772ff421f34d6d50bf92323 337 Pfam PF02743 Cache domain 112 332 1.6E-23 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_0514 98b5ce0f9772ff421f34d6d50bf92323 337 SUPERFAMILY SSF58104 6 146 1.2E-20 T 13-10-2018 Trebr_1711 5a43ed9aa60182f54b7fa4e415e77582 267 SUPERFAMILY SSF55781 77 264 4.64E-52 T 13-10-2018 Trebr_1711 5a43ed9aa60182f54b7fa4e415e77582 267 Pfam PF09339 IclR helix-turn-helix domain 16 65 2.7E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Trebr_1711 5a43ed9aa60182f54b7fa4e415e77582 267 Gene3D G3DSA:1.10.10.10 12 85 4.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1711 5a43ed9aa60182f54b7fa4e415e77582 267 SMART SM00346 14 102 9.1E-17 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Trebr_1711 5a43ed9aa60182f54b7fa4e415e77582 267 Pfam PF01614 Bacterial transcriptional regulator 129 260 4.8E-40 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal Trebr_1711 5a43ed9aa60182f54b7fa4e415e77582 267 SUPERFAMILY SSF46785 14 85 1.99E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1711 5a43ed9aa60182f54b7fa4e415e77582 267 Gene3D G3DSA:3.30.450.40 86 267 5.9E-62 T 13-10-2018 IPR029016 GAF-like domain superfamily Trebr_0759 a9cd0a79fa919d8249e33efb3f5c9fa6 410 Gene3D G3DSA:3.90.1150.10 19 405 3.5E-117 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0759 a9cd0a79fa919d8249e33efb3f5c9fa6 410 Pfam PF00155 Aminotransferase class I and II 36 405 6.4E-29 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_0759 a9cd0a79fa919d8249e33efb3f5c9fa6 410 TIGRFAM TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase 3 407 4.2E-156 T 13-10-2018 IPR019942 LL-diaminopimelate aminotransferase/aminotransferase ALD1 GO:0008483 KEGG: 00300+2.6.1.83|MetaCyc: PWY-5097 Trebr_0759 a9cd0a79fa919d8249e33efb3f5c9fa6 410 SUPERFAMILY SSF53383 6 405 8.51E-66 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0759 a9cd0a79fa919d8249e33efb3f5c9fa6 410 Gene3D G3DSA:3.40.640.10 46 302 3.5E-117 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1041 0681bdce01710863c173eb8425c58da1 179 Gene3D G3DSA:3.30.70.1260 90 179 4.1E-13 T 13-10-2018 Trebr_1041 0681bdce01710863c173eb8425c58da1 179 Pfam PF08002 Protein of unknown function (DUF1697) 1 139 5.4E-41 T 13-10-2018 IPR012545 Protein of unknown function DUF1697 Trebr_1041 0681bdce01710863c173eb8425c58da1 179 PIRSF PIRSF008502 1 179 4.3E-38 T 13-10-2018 IPR012545 Protein of unknown function DUF1697 Trebr_1041 0681bdce01710863c173eb8425c58da1 179 Gene3D G3DSA:3.30.70.1280 1 89 1.9E-28 T 13-10-2018 Trebr_1041 0681bdce01710863c173eb8425c58da1 179 SUPERFAMILY SSF160379 1 178 4.05E-51 T 13-10-2018 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 234 248 4.9E-45 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 184 201 4.9E-45 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 154 172 4.9E-45 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 67 86 4.9E-45 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 135 151 4.9E-45 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 30 43 4.9E-45 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 PIRSF PIRSF005419 1 691 1.7E-236 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 12 688 3.0E-250 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 Gene3D G3DSA:1.10.8.540 500 588 1.5E-32 T 13-10-2018 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 Gene3D G3DSA:1.10.490.80 590 688 1.7E-8 T 13-10-2018 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 Gene3D G3DSA:3.40.30.60 356 499 7.7E-52 T 13-10-2018 Trebr_1141 acd4814ba8c8f9ae23b6dbbd9a060edd 691 Pfam PF00771 FHIPEP family 23 680 1.1E-239 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Trebr_0820 48a6b97cec4c27fef0090c4dbf652be5 378 Pfam PF14897 EpsG family 27 338 1.4E-49 T 13-10-2018 Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 Gene3D G3DSA:3.30.230.10 18 196 7.3E-59 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 Gene3D G3DSA:3.30.70.890 197 364 7.3E-59 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 SUPERFAMILY SSF54211 3 197 1.14E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 SUPERFAMILY SSF55060 244 388 2.11E-18 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 PIRSF PIRSF000530 1 390 4.3E-53 T 13-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 PRINTS PR00959 Mevalonate kinase family signature 114 136 8.1E-11 T 13-10-2018 Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 PRINTS PR00959 Mevalonate kinase family signature 22 46 8.1E-11 T 13-10-2018 Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 PRINTS PR00959 Mevalonate kinase family signature 336 353 8.1E-11 T 13-10-2018 Trebr_1202 93f7c76222e8bf69c5f24612184946cc 391 Pfam PF10509 Galactokinase galactose-binding signature 8 53 1.1E-11 T 13-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2127 75b539644b9f7d16f978ba6018ae0b52 312 ProDom PD416840 MEMBRANE A ANTIGEN TREPONEMAL TMPA PRECURSOR PALMITATE SIGNAL LIPOPROTEIN PROTEIN 128 288 1.0E-4 T 13-10-2018 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 SUPERFAMILY SSF64518 1 286 1.57E-83 T 13-10-2018 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 Gene3D G3DSA:1.20.1330.10 194 245 6.4E-39 T 13-10-2018 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 Pfam PF00700 Bacterial flagellin C-terminal helical region 201 285 5.1E-27 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 Gene3D G3DSA:1.20.1330.10 42 178 1.6E-46 T 13-10-2018 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 PRINTS PR00207 Flagellin signature 74 93 1.3E-23 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 PRINTS PR00207 Flagellin signature 35 52 1.3E-23 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 PRINTS PR00207 Flagellin signature 109 132 1.3E-23 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 1.2E-38 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Trebr_1544 b9b8247bb92a7c20f948683fc1384afb 286 Gene3D G3DSA:1.20.58.1830 251 285 6.4E-39 T 13-10-2018 Trebr_2452 04cf3440fa25150a84d528898614d85e 554 Gene3D G3DSA:3.30.950.30 1 118 3.2E-21 T 13-10-2018 IPR038461 Schlafen, AAA domain superfamily Trebr_2452 04cf3440fa25150a84d528898614d85e 554 Pfam PF13749 Putative ATP-dependent DNA helicase recG C-terminal 302 382 5.4E-12 T 13-10-2018 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain Trebr_2452 04cf3440fa25150a84d528898614d85e 554 Gene3D G3DSA:1.10.10.10 394 472 1.3E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2452 04cf3440fa25150a84d528898614d85e 554 Gene3D G3DSA:3.30.565.60 229 389 3.3E-33 T 13-10-2018 IPR038475 RecG, C-terminal domain superfamily Trebr_2452 04cf3440fa25150a84d528898614d85e 554 SUPERFAMILY SSF46785 411 486 2.81E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2452 04cf3440fa25150a84d528898614d85e 554 Pfam PF13463 Winged helix DNA-binding domain 416 467 2.1E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_2452 04cf3440fa25150a84d528898614d85e 554 Pfam PF04326 Putative DNA-binding domain 8 113 2.1E-14 T 13-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 Pfam PF00571 CBS domain 90 141 2.7E-9 T 13-10-2018 IPR000644 CBS domain Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 Pfam PF00571 CBS domain 24 77 9.4E-10 T 13-10-2018 IPR000644 CBS domain Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 248 316 7.4E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 Gene3D G3DSA:3.10.580.10 21 145 4.0E-25 T 13-10-2018 Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 SMART SM00116 93 141 1.5E-6 T 13-10-2018 IPR000644 CBS domain Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 SMART SM00116 31 78 1.4E-4 T 13-10-2018 IPR000644 CBS domain Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 Gene3D G3DSA:3.30.565.10 187 318 3.2E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 SUPERFAMILY SSF55874 220 317 1.57E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0318 9b01fb18bae60978678f48f7e7fdd0a4 322 SUPERFAMILY SSF54631 21 150 2.32E-26 T 13-10-2018 Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 SMART SM00354 1 71 3.2E-31 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 SUPERFAMILY SSF53822 60 331 5.62E-88 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 Gene3D G3DSA:3.40.50.2300 160 289 2.8E-85 T 13-10-2018 Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 Gene3D G3DSA:1.10.260.40 3 58 2.0E-22 T 13-10-2018 Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 SUPERFAMILY SSF47413 1 57 1.65E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.4E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 Gene3D G3DSA:3.40.50.2300 62 306 2.8E-85 T 13-10-2018 Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 Trebr_0262 6e1c717013b9c2783de74ab6f7ad6654 338 Pfam PF13377 Periplasmic binding protein-like domain 169 329 9.9E-38 T 13-10-2018 Trebr_1096 04320907fcf996768e2a5185d93e9733 595 SUPERFAMILY SSF51306 168 304 1.99E-22 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Trebr_1096 04320907fcf996768e2a5185d93e9733 595 SUPERFAMILY SSF51306 451 586 7.32E-11 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Trebr_1096 04320907fcf996768e2a5185d93e9733 595 Gene3D G3DSA:2.10.109.10 165 306 5.4E-14 T 13-10-2018 Trebr_1096 04320907fcf996768e2a5185d93e9733 595 Pfam PF00717 Peptidase S24-like 175 229 1.5E-7 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Trebr_1096 04320907fcf996768e2a5185d93e9733 595 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 153 291 1.8E-15 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1096 04320907fcf996768e2a5185d93e9733 595 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 169 185 3.4E-17 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1096 04320907fcf996768e2a5185d93e9733 595 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 267 279 3.4E-17 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1096 04320907fcf996768e2a5185d93e9733 595 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 517 536 3.4E-17 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1096 04320907fcf996768e2a5185d93e9733 595 Gene3D G3DSA:2.10.109.10 441 587 1.5E-7 T 13-10-2018 Trebr_1096 04320907fcf996768e2a5185d93e9733 595 ProSitePatterns PS00760 Signal peptidases I lysine active site. 269 281 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Trebr_1886 9d44acb375d1be417a3b026394270dd1 264 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 185 262 3.5E-22 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Trebr_1886 9d44acb375d1be417a3b026394270dd1 264 SUPERFAMILY SSF117143 92 224 1.05E-32 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Trebr_1886 9d44acb375d1be417a3b026394270dd1 264 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 262 7.0E-107 T 13-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 Trebr_1886 9d44acb375d1be417a3b026394270dd1 264 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Trebr_1886 9d44acb375d1be417a3b026394270dd1 264 Pfam PF00460 Flagella basal body rod protein 5 35 6.9E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Trebr_1886 9d44acb375d1be417a3b026394270dd1 264 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 1.3E-46 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Trebr_1886 9d44acb375d1be417a3b026394270dd1 264 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 150 244 3.8E-28 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Trebr_0908 ad26094f4c7162edcf710ff199c3010e 98 SUPERFAMILY SSF160544 14 91 1.57E-16 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Trebr_0908 ad26094f4c7162edcf710ff199c3010e 98 Pfam PF01312 FlhB HrpN YscU SpaS Family 16 86 1.6E-10 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Trebr_0908 ad26094f4c7162edcf710ff199c3010e 98 Gene3D G3DSA:3.40.1690.10 13 92 1.4E-14 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Trebr_2471 42d13d438aecb88bcbc56731c2322b69 141 Pfam PF09424 Yqey-like protein 13 140 9.2E-12 T 13-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 Trebr_2471 42d13d438aecb88bcbc56731c2322b69 141 Gene3D G3DSA:1.10.1510.10 3 87 1.8E-5 T 13-10-2018 Trebr_2471 42d13d438aecb88bcbc56731c2322b69 141 SUPERFAMILY SSF89095 6 140 7.85E-12 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Trebr_1166 44f244c0e6d3e29286f576f50f5c17aa 325 Pfam PF07949 YbbR-like protein 56 119 1.6E-6 T 13-10-2018 IPR012505 YbbR-like Trebr_1166 44f244c0e6d3e29286f576f50f5c17aa 325 Pfam PF07949 YbbR-like protein 136 210 3.0E-7 T 13-10-2018 IPR012505 YbbR-like Trebr_1166 44f244c0e6d3e29286f576f50f5c17aa 325 Gene3D G3DSA:2.170.120.40 139 220 9.0E-9 T 13-10-2018 Trebr_1166 44f244c0e6d3e29286f576f50f5c17aa 325 Gene3D G3DSA:2.170.120.30 34 138 3.6E-14 T 13-10-2018 Trebr_1166 44f244c0e6d3e29286f576f50f5c17aa 325 Gene3D G3DSA:2.170.120.30 224 319 3.7E-14 T 13-10-2018 Trebr_1495 b6b9f228e466396df447f274fa2a4155 163 Gene3D G3DSA:2.40.50.180 44 151 1.3E-12 T 13-10-2018 Trebr_1495 b6b9f228e466396df447f274fa2a4155 163 Pfam PF01584 CheW-like domain 28 154 1.7E-12 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_1495 b6b9f228e466396df447f274fa2a4155 163 SMART SM00260 23 153 1.1E-4 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_1495 b6b9f228e466396df447f274fa2a4155 163 Gene3D G3DSA:2.30.30.40 29 147 1.3E-12 T 13-10-2018 Trebr_1495 b6b9f228e466396df447f274fa2a4155 163 SUPERFAMILY SSF50341 27 155 1.2E-16 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_0633 831acfca6e0f0aed811b0ea000f4ff79 250 Gene3D G3DSA:3.40.50.150 36 232 6.4E-38 T 13-10-2018 Trebr_0633 831acfca6e0f0aed811b0ea000f4ff79 250 Pfam PF13649 Methyltransferase domain 48 143 6.1E-14 T 13-10-2018 Trebr_0633 831acfca6e0f0aed811b0ea000f4ff79 250 Gene3D G3DSA:2.20.25.110 151 208 6.4E-38 T 13-10-2018 Trebr_0633 831acfca6e0f0aed811b0ea000f4ff79 250 SUPERFAMILY SSF53335 25 250 6.23E-36 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 247 8.4E-54 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 2.3E-37 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 SUPERFAMILY SSF53901 1 252 1.51E-72 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 Gene3D G3DSA:3.40.47.10 257 403 3.2E-50 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 SMART SM00825 Beta-ketoacyl synthase 4 405 7.1E-13 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 PIRSF PIRSF000447 1 414 4.9E-163 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 Gene3D G3DSA:3.40.47.10 1 255 1.7E-85 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 SUPERFAMILY SSF53901 216 413 1.02E-65 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_0697 d99ffde7fdfe153c767ef73197ed0dc5 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 412 1.3E-171 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 SUPERFAMILY SSF54791 556 641 1.1E-20 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 690 1.2E-297 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Gene3D G3DSA:3.30.1370.10 552 622 3.4E-19 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Pfam PF00013 KH domain 557 613 2.7E-9 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Pfam PF01138 3' exoribonuclease family, domain 1 13 142 1.6E-18 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Pfam PF01138 3' exoribonuclease family, domain 1 323 454 1.5E-17 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 SUPERFAMILY SSF55666 451 561 4.07E-28 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 1 694 29.639 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Pfam PF03725 3' exoribonuclease family, domain 2 458 529 1.3E-4 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Pfam PF03725 3' exoribonuclease family, domain 2 145 207 5.5E-12 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Gene3D G3DSA:2.40.50.140 623 693 1.2E-26 T 13-10-2018 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 SMART SM00322 553 618 8.7E-12 T 13-10-2018 IPR004087 K Homology domain GO:0003676 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Gene3D G3DSA:3.30.230.70 1 228 1.9E-75 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 SUPERFAMILY SSF54211 290 489 2.53E-47 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 PIRSF PIRSF005499 1 699 1.6E-297 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Pfam PF00575 S1 RNA binding domain 620 689 1.1E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Gene3D G3DSA:3.30.230.70 238 551 3.3E-111 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 SMART SM00316 621 691 1.9E-23 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 SUPERFAMILY SSF54211 4 142 1.21E-43 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 SUPERFAMILY SSF55666 143 234 2.52E-28 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 SUPERFAMILY SSF50249 619 696 1.63E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1965 0e4207f48dbd4dd8e338306c38a2ab9f 699 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 318 4.1E-15 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Trebr_0460 0b8e5299b8bcf7f0dacf3127149a8bf4 500 Gene3D G3DSA:1.20.1530.20 2 390 4.4E-28 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily Trebr_0460 0b8e5299b8bcf7f0dacf3127149a8bf4 500 SUPERFAMILY SSF116726 404 478 2.09E-14 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Trebr_0460 0b8e5299b8bcf7f0dacf3127149a8bf4 500 Gene3D G3DSA:3.30.70.1450 391 481 9.5E-18 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Trebr_0460 0b8e5299b8bcf7f0dacf3127149a8bf4 500 Pfam PF00999 Sodium/hydrogen exchanger family 9 387 4.1E-63 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Trebr_0460 0b8e5299b8bcf7f0dacf3127149a8bf4 500 Pfam PF02080 TrkA-C domain 415 478 1.7E-15 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Trebr_2479 dd5817270bc7f2a1c7ade35962ca3d07 276 SMART SM00382 28 228 5.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2479 dd5817270bc7f2a1c7ade35962ca3d07 276 Pfam PF00005 ABC transporter 19 175 1.7E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2479 dd5817270bc7f2a1c7ade35962ca3d07 276 Gene3D G3DSA:3.40.50.300 4 266 6.4E-61 T 13-10-2018 Trebr_2479 dd5817270bc7f2a1c7ade35962ca3d07 276 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_2479 dd5817270bc7f2a1c7ade35962ca3d07 276 SUPERFAMILY SSF52540 5 243 1.23E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1631 9f859cca2cbe717d00bd7aef5c59e85a 401 Pfam PF02719 Polysaccharide biosynthesis protein 37 341 5.9E-40 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Trebr_1631 9f859cca2cbe717d00bd7aef5c59e85a 401 SUPERFAMILY SSF51735 35 281 5.17E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1631 9f859cca2cbe717d00bd7aef5c59e85a 401 Gene3D G3DSA:3.40.50.720 10 375 9.6E-144 T 13-10-2018 Trebr_1631 9f859cca2cbe717d00bd7aef5c59e85a 401 Gene3D G3DSA:3.90.25.40 206 316 9.6E-144 T 13-10-2018 Trebr_0056 784c9f04b55875cc8921a02b9e31efb8 72 SUPERFAMILY SSF47598 11 58 3.19E-9 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Trebr_0056 784c9f04b55875cc8921a02b9e31efb8 72 Gene3D G3DSA:1.10.1220.10 6 55 1.2E-7 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Trebr_0417 8635f1ba05404e2ca053555d82efb36e 453 Hamap MF_01221 UPF0210 protein . 3 453 50.321 T 13-10-2018 IPR007841 Uncharacterised protein family UPF0210 Trebr_0417 8635f1ba05404e2ca053555d82efb36e 453 Pfam PF05167 Uncharacterised ACR (DUF711) 14 417 1.2E-176 T 13-10-2018 IPR007841 Uncharacterised protein family UPF0210 Trebr_0417 8635f1ba05404e2ca053555d82efb36e 453 SUPERFAMILY SSF51998 4 448 7.14E-171 T 13-10-2018 Trebr_0417 8635f1ba05404e2ca053555d82efb36e 453 Gene3D G3DSA:3.20.70.20 3 453 1.8E-174 T 13-10-2018 Trebr_1456 318ea5c307cf5da63bd46cdb1fadac06 266 SUPERFAMILY SSF141371 170 246 7.46E-6 T 13-10-2018 Trebr_1456 318ea5c307cf5da63bd46cdb1fadac06 266 Pfam PF07238 PilZ domain 145 244 1.2E-6 T 13-10-2018 IPR009875 PilZ domain GO:0035438 Trebr_1788 048515e1d60277e996006342b9fdbd36 699 Pfam PF01965 DJ-1/PfpI family 37 184 7.2E-10 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Trebr_1788 048515e1d60277e996006342b9fdbd36 699 Pfam PF00754 F5/8 type C domain 578 691 2.4E-27 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain Trebr_1788 048515e1d60277e996006342b9fdbd36 699 Gene3D G3DSA:2.60.120.260 568 696 7.3E-35 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_1788 048515e1d60277e996006342b9fdbd36 699 SUPERFAMILY SSF52317 37 191 5.83E-20 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1788 048515e1d60277e996006342b9fdbd36 699 Gene3D G3DSA:3.40.50.880 32 214 1.3E-20 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1788 048515e1d60277e996006342b9fdbd36 699 Gene3D G3DSA:2.60.40.10 480 567 1.9E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1788 048515e1d60277e996006342b9fdbd36 699 Gene3D G3DSA:3.40.50.1820 218 477 1.7E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_1788 048515e1d60277e996006342b9fdbd36 699 SUPERFAMILY SSF49785 571 696 3.69E-30 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_1788 048515e1d60277e996006342b9fdbd36 699 SUPERFAMILY SSF53474 245 472 1.01E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_1642 1929ded118597005d4662a35abb90711 384 SUPERFAMILY SSF53448 3 219 8.3E-38 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1642 1929ded118597005d4662a35abb90711 384 Gene3D G3DSA:3.90.550.10 1 219 5.1E-53 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1642 1929ded118597005d4662a35abb90711 384 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 232 383 9.0E-44 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Trebr_1642 1929ded118597005d4662a35abb90711 384 SUPERFAMILY SSF56784 230 383 3.36E-34 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_1642 1929ded118597005d4662a35abb90711 384 Gene3D G3DSA:3.40.50.1000 220 384 1.4E-49 T 13-10-2018 IPR023214 HAD superfamily Trebr_1642 1929ded118597005d4662a35abb90711 384 Pfam PF02348 Cytidylyltransferase 3 199 2.0E-16 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Trebr_1642 1929ded118597005d4662a35abb90711 384 Pfam PF08282 haloacid dehalogenase-like hydrolase 309 377 2.4E-11 T 13-10-2018 Trebr_1642 1929ded118597005d4662a35abb90711 384 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 233 348 4.0E-13 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 Gene3D G3DSA:3.40.50.1980 240 359 6.6E-109 T 13-10-2018 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 30 438 1.2E-131 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 SUPERFAMILY SSF53720 25 438 2.72E-62 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 PIRSF PIRSF000099 9 439 8.5E-128 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 236 268 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 Pfam PF00815 Histidinol dehydrogenase 23 439 1.7E-137 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 2 439 34.595 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 Gene3D G3DSA:3.40.50.1980 27 238 6.6E-109 T 13-10-2018 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 PRINTS PR00083 Histidinol dehydrogenase signature 258 277 2.0E-58 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 PRINTS PR00083 Histidinol dehydrogenase signature 177 203 2.0E-58 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 PRINTS PR00083 Histidinol dehydrogenase signature 207 232 2.0E-58 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 PRINTS PR00083 Histidinol dehydrogenase signature 236 257 2.0E-58 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 PRINTS PR00083 Histidinol dehydrogenase signature 30 54 2.0E-58 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_2362 3a05da7e8d8e1aa505915d3285f21ce6 439 PRINTS PR00083 Histidinol dehydrogenase signature 371 389 2.0E-58 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 267 5.5E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 267 283 5.5E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 Gene3D G3DSA:1.10.10.60 181 232 1.3E-9 T 13-10-2018 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 Gene3D G3DSA:1.10.10.60 233 287 2.0E-18 T 13-10-2018 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 Gene3D G3DSA:2.60.120.10 14 100 1.2E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 SUPERFAMILY SSF46689 236 285 1.61E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 Pfam PF02311 AraC-like ligand binding domain 34 95 2.0E-10 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 Pfam PF12833 Helix-turn-helix domain 207 284 4.9E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 SMART SM00342 200 283 2.3E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0646 e107a9c9b9ff01baad9835537ba3f728 290 SUPERFAMILY SSF51215 33 152 4.32E-19 T 13-10-2018 IPR037923 Transcription regulator HTH-like Trebr_0495 f0b1734e482a4b600c7de5f1599a9bf1 309 Gene3D G3DSA:1.25.40.10 147 305 1.2E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0495 f0b1734e482a4b600c7de5f1599a9bf1 309 SUPERFAMILY SSF48452 190 280 9.49E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2195 25e8c7e42961661ba7dc7ae40ad8c39e 608 SMART SM00283 363 596 1.3E-53 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_2195 25e8c7e42961661ba7dc7ae40ad8c39e 608 Gene3D G3DSA:1.10.287.950 306 598 5.6E-65 T 13-10-2018 Trebr_2195 25e8c7e42961661ba7dc7ae40ad8c39e 608 Gene3D G3DSA:3.30.450.20 149 288 4.5E-13 T 13-10-2018 Trebr_2195 25e8c7e42961661ba7dc7ae40ad8c39e 608 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 422 581 3.2E-29 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_2195 25e8c7e42961661ba7dc7ae40ad8c39e 608 Pfam PF02743 Cache domain 45 267 7.5E-15 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_2195 25e8c7e42961661ba7dc7ae40ad8c39e 608 SUPERFAMILY SSF58104 337 597 8.11E-54 T 13-10-2018 Trebr_1186 6c4cbd047248bfc8b401fefe4f79333d 432 Gene3D G3DSA:3.40.50.12240 13 432 7.2E-106 T 13-10-2018 Trebr_1186 6c4cbd047248bfc8b401fefe4f79333d 432 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 2 432 45.599 T 13-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1186 6c4cbd047248bfc8b401fefe4f79333d 432 SUPERFAMILY SSF52540 75 334 1.53E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1186 6c4cbd047248bfc8b401fefe4f79333d 432 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 127 318 9.0E-45 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1186 6c4cbd047248bfc8b401fefe4f79333d 432 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 9 71 4.1E-7 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1821 e3ef62714897171fc79dc41eba99c782 285 SUPERFAMILY SSF53187 21 218 2.12E-11 T 13-10-2018 Trebr_1821 e3ef62714897171fc79dc41eba99c782 285 Pfam PF04389 Peptidase family M28 64 264 2.9E-8 T 13-10-2018 IPR007484 Peptidase M28 Trebr_0560 d638b4e6349c513f875e30b5114cf677 155 PIRSF PIRSF002070 1 153 7.1E-30 T 13-10-2018 Trebr_0560 d638b4e6349c513f875e30b5114cf677 155 SUPERFAMILY SSF50249 4 153 1.23E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0560 d638b4e6349c513f875e30b5114cf677 155 Pfam PF00436 Single-strand binding protein family 4 106 1.8E-29 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Trebr_0560 d638b4e6349c513f875e30b5114cf677 155 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 144 2.1E-31 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Trebr_0560 d638b4e6349c513f875e30b5114cf677 155 Hamap MF_00984 Single-stranded DNA-binding protein. 4 111 24.683 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Trebr_0560 d638b4e6349c513f875e30b5114cf677 155 Gene3D G3DSA:2.40.50.140 2 149 4.4E-33 T 13-10-2018 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 Gene3D G3DSA:3.90.70.10 1 143 2.3E-42 T 13-10-2018 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 Pfam PF00664 ABC transporter transmembrane region 164 431 2.2E-41 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 Pfam PF00005 ABC transporter 493 642 5.8E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 Gene3D G3DSA:3.40.50.300 467 715 3.3E-88 T 13-10-2018 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 SUPERFAMILY SSF90123 149 460 6.41E-64 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 TIGRFAM TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter 8 709 5.0E-185 T 13-10-2018 IPR005897 Peptidase C39, ABC-type bacteriocin transporter GO:0008234|GO:0016020|GO:0022885|GO:0043213 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 ProSitePatterns PS00211 ABC transporters family signature. 614 628 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 SMART SM00382 502 688 8.7E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 SUPERFAMILY SSF52540 469 712 4.31E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 Pfam PF03412 Peptidase C39 family 4 135 3.2E-35 T 13-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 Trebr_1063 8745e8acf17e080ba46264af001d4d31 715 Gene3D G3DSA:1.20.1560.10 146 462 2.5E-78 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 SUPERFAMILY SSF55785 21 145 1.63E-10 T 13-10-2018 IPR035965 PAS domain superfamily Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 SUPERFAMILY SSF47384 151 234 1.12E-9 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 281 384 1.4E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 30 152 7.7E-9 T 13-10-2018 IPR000014 PAS domain Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 SMART SM00388 162 238 3.1E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 Gene3D G3DSA:3.30.450.20 20 149 2.8E-12 T 13-10-2018 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 Pfam PF00512 His Kinase A (phospho-acceptor) domain 162 231 7.5E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 SMART SM00091 32 102 5.5E-4 T 13-10-2018 IPR000014 PAS domain Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 383 1.0E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 364 1.0E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 317 331 1.0E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 345 1.0E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 Gene3D G3DSA:3.30.565.10 242 396 7.0E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 SMART SM00387 280 386 3.4E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 Gene3D G3DSA:1.10.287.130 150 235 4.1E-16 T 13-10-2018 Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 SUPERFAMILY SSF55874 235 385 7.2E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1154 8205ecaaf6aa326378c753cb63b05e61 397 Pfam PF08448 PAS fold 38 149 3.5E-6 T 13-10-2018 IPR013656 PAS fold-4 Trebr_0928 b97d97b910c70b37a669c1acaabebe16 232 SUPERFAMILY SSF52540 4 228 2.13E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0928 b97d97b910c70b37a669c1acaabebe16 232 Pfam PF00005 ABC transporter 23 176 3.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0928 b97d97b910c70b37a669c1acaabebe16 232 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0928 b97d97b910c70b37a669c1acaabebe16 232 SMART SM00382 32 224 4.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0928 b97d97b910c70b37a669c1acaabebe16 232 Gene3D G3DSA:3.40.50.300 2 232 7.1E-67 T 13-10-2018 Trebr_0288 98991678ddccb9ecede2dc730dac90ff 304 Pfam PF00535 Glycosyl transferase family 2 4 109 1.1E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0288 98991678ddccb9ecede2dc730dac90ff 304 Gene3D G3DSA:3.90.550.10 1 242 6.2E-38 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0288 98991678ddccb9ecede2dc730dac90ff 304 SUPERFAMILY SSF53448 1 291 6.93E-39 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 SUPERFAMILY SSF50621 255 410 3.35E-39 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 Gene3D G3DSA:3.20.20.10 29 275 6.6E-108 T 13-10-2018 IPR029066 PLP-binding barrel Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 30 279 3.9E-32 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 53 71 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 SUPERFAMILY SSF51419 21 280 2.94E-60 T 13-10-2018 IPR029066 PLP-binding barrel Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 4.6E-9 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 73 85 4.6E-9 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 53 71 4.6E-9 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 369 382 4.6E-9 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 24 369 1.8E-19 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 71 88 1.9E-11 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 156 165 1.9E-11 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 297 315 1.9E-11 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 379 401 1.9E-11 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 Gene3D G3DSA:2.40.37.10 13 409 6.6E-108 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Trebr_0649 11e2e5b75cf44bd2ae3a7825daf3ce72 422 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 220 233 - T 13-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 Pfam PF00817 impB/mucB/samB family 7 154 2.2E-49 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 Gene3D G3DSA:3.30.1490.100 240 353 2.9E-22 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 Gene3D G3DSA:3.30.70.270 72 170 6.2E-29 T 13-10-2018 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 Gene3D G3DSA:1.10.150.20 171 231 3.3E-13 T 13-10-2018 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 SUPERFAMILY SSF100879 243 349 1.29E-22 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 SUPERFAMILY SSF56672 3 231 2.4E-76 T 13-10-2018 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 Pfam PF11798 IMS family HHH motif 171 197 1.2E-5 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 Gene3D G3DSA:2.30.40.20 12 71 1.8E-29 T 13-10-2018 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 Hamap MF_01113 DNA polymerase IV [dinB]. 1 353 32.722 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Trebr_1206 8f39a1e5dab3d52241c5b3e7bbb820ae 2005 Pfam PF11799 impB/mucB/samB family C-terminal domain 240 345 7.9E-16 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Gene3D G3DSA:4.10.860.10 616 665 4.7E-10 T 13-10-2018 Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 SUPERFAMILY SSF46600 616 662 1.31E-10 T 13-10-2018 IPR036876 UVR domain superfamily Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 SMART SM00487 8 424 1.5E-24 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Pfam PF00271 Helicase conserved C-terminal domain 434 544 3.2E-17 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 SUPERFAMILY SSF52540 2 414 9.96E-128 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Pfam PF12344 Ultra-violet resistance protein B 551 592 8.8E-19 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Gene3D G3DSA:3.40.50.300 1 215 1.1E-73 T 13-10-2018 Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Gene3D G3DSA:3.40.50.300 414 595 1.7E-48 T 13-10-2018 Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 SMART SM00490 459 545 6.9E-20 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 SUPERFAMILY SSF52540 37 568 5.81E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 662 41.867 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Gene3D G3DSA:3.40.50.300 264 413 3.2E-48 T 13-10-2018 Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 4 660 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Pfam PF04851 Type III restriction enzyme, res subunit 15 86 2.0E-10 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Trebr_1115 9ff81feaee58da33caba9599cefbf08e 665 Pfam PF02151 UvrB/uvrC motif 628 662 6.2E-8 T 13-10-2018 IPR001943 UVR domain GO:0005515 Trebr_2559 dc4ce182c54faf90642d0401f6b1251c 311 Gene3D G3DSA:1.20.1510.10 12 214 5.8E-23 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Trebr_2559 dc4ce182c54faf90642d0401f6b1251c 311 Pfam PF01545 Cation efflux family 15 214 5.4E-33 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Trebr_2559 dc4ce182c54faf90642d0401f6b1251c 311 SUPERFAMILY SSF161111 12 214 7.59E-31 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Trebr_2559 dc4ce182c54faf90642d0401f6b1251c 311 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 14 284 6.8E-25 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Trebr_1855 f2dc83db2cc376d625bc79c16a5e554f 414 Pfam PF00700 Bacterial flagellin C-terminal helical region 332 412 8.2E-5 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Trebr_1855 f2dc83db2cc376d625bc79c16a5e554f 414 SUPERFAMILY SSF64518 1 413 4.18E-47 T 13-10-2018 Trebr_1855 f2dc83db2cc376d625bc79c16a5e554f 414 Gene3D G3DSA:1.20.1330.10 41 268 2.0E-32 T 13-10-2018 Trebr_1855 f2dc83db2cc376d625bc79c16a5e554f 414 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 142 1.3E-11 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Trebr_1855 f2dc83db2cc376d625bc79c16a5e554f 414 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 3 413 4.0E-83 T 13-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 Trebr_1855 f2dc83db2cc376d625bc79c16a5e554f 414 Pfam PF07196 Flagellin hook IN motif 223 263 5.1E-5 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 SUPERFAMILY SSF88659 231 322 3.55E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 SUPERFAMILY SSF88659 173 247 9.3E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 PRINTS PR00046 Major sigma-70 factor signature 148 156 2.2E-25 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 PRINTS PR00046 Major sigma-70 factor signature 124 137 2.2E-25 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 PRINTS PR00046 Major sigma-70 factor signature 308 319 2.2E-25 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 PRINTS PR00046 Major sigma-70 factor signature 293 308 2.2E-25 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 PRINTS PR00046 Major sigma-70 factor signature 272 284 2.2E-25 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 Pfam PF04542 Sigma-70 region 2 100 169 6.3E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 293 319 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 SUPERFAMILY SSF88946 29 169 3.45E-43 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 Gene3D G3DSA:1.10.10.10 173 248 1.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 Pfam PF04539 Sigma-70 region 3 187 254 1.2E-16 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 Gene3D G3DSA:1.10.601.10 35 169 2.8E-42 T 13-10-2018 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 Pfam PF00140 Sigma-70 factor, region 1.2 32 62 2.3E-8 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 Pfam PF04545 Sigma-70, region 4 268 321 3.6E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 98 322 5.4E-34 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Trebr_1594 23c7a9da40e5399f04c8ea61700e8cca 332 Gene3D G3DSA:1.10.10.10 249 331 1.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1305 ab6599659ca116cb93449b91bca6f44a 552 Gene3D G3DSA:1.10.3720.10 287 539 2.8E-38 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1305 ab6599659ca116cb93449b91bca6f44a 552 Gene3D G3DSA:1.10.3720.10 12 268 2.4E-56 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1305 ab6599659ca116cb93449b91bca6f44a 552 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 365 532 2.0E-11 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1305 ab6599659ca116cb93449b91bca6f44a 552 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 264 4.8E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1305 ab6599659ca116cb93449b91bca6f44a 552 SUPERFAMILY SSF161098 12 264 9.7E-47 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1305 ab6599659ca116cb93449b91bca6f44a 552 SUPERFAMILY SSF161098 287 531 5.89E-38 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2227 e2cd8c0b3c1a0afe7cac3ac2db67ccf5 360 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 241 8.5E-25 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Trebr_2227 e2cd8c0b3c1a0afe7cac3ac2db67ccf5 360 Gene3D G3DSA:3.40.50.720 1 350 7.6E-49 T 13-10-2018 Trebr_2227 e2cd8c0b3c1a0afe7cac3ac2db67ccf5 360 SUPERFAMILY SSF51735 2 346 3.4E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1203 ff14d58e2111759312865bdee5c31ed7 245 Gene3D G3DSA:3.40.1210.10 1 235 5.8E-71 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Trebr_1203 ff14d58e2111759312865bdee5c31ed7 245 SUPERFAMILY SSF64167 1 229 2.88E-62 T 13-10-2018 Trebr_1203 ff14d58e2111759312865bdee5c31ed7 245 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 244 27.544 T 13-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Trebr_1203 ff14d58e2111759312865bdee5c31ed7 245 Pfam PF01975 Survival protein SurE 4 181 5.3E-49 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Trebr_1203 ff14d58e2111759312865bdee5c31ed7 245 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 228 4.9E-46 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 Gene3D G3DSA:1.25.40.10 322 473 3.2E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 Pfam PF13181 Tetratricopeptide repeat 147 178 5.5E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 Pfam PF14559 Tetratricopeptide repeat 259 309 7.7E-7 T 13-10-2018 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 9 42 280.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 111 144 4.3E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 179 212 9.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 281 313 190.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 247 280 0.99 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 417 450 0.81 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 213 246 30.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 43 76 33.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 77 110 0.005 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SMART SM00028 145 178 8.9E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SUPERFAMILY SSF48452 19 306 5.31E-49 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 Pfam PF13432 Tetratricopeptide repeat 406 447 0.01 T 13-10-2018 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 Pfam PF13432 Tetratricopeptide repeat 14 76 8.0E-5 T 13-10-2018 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 SUPERFAMILY SSF81901 250 446 9.94E-20 T 13-10-2018 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 Pfam PF13414 TPR repeat 92 125 2.3E-8 T 13-10-2018 Trebr_1961 09ebb3779a44668581653248e4bfc5f0 987 Gene3D G3DSA:1.25.40.10 2 311 1.0E-67 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 Pfam PF03466 LysR substrate binding domain 117 297 4.4E-11 T 13-10-2018 IPR005119 LysR, substrate-binding Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 SUPERFAMILY SSF53850 89 295 6.33E-23 T 13-10-2018 Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.5E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.5E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 Gene3D G3DSA:3.40.190.10 172 272 7.2E-13 T 13-10-2018 Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 Gene3D G3DSA:1.10.10.10 1 82 9.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 SUPERFAMILY SSF46785 1 82 6.74E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1242 1855cd6e7ad0de243509fb8b93efe7ce 300 Gene3D G3DSA:3.40.190.10 117 283 7.2E-13 T 13-10-2018 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Gene3D G3DSA:3.30.70.870 397 474 3.8E-20 T 13-10-2018 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 SUPERFAMILY SSF54211 470 589 4.3E-43 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Pfam PF00009 Elongation factor Tu GTP binding domain 7 274 2.1E-36 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Pfam PF14492 Elongation Factor G, domain II 396 467 1.1E-23 T 13-10-2018 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Pfam PF03764 Elongation factor G, domain IV 470 588 1.2E-43 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 156 1.6E-15 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 SMART SM00889 471 589 3.3E-66 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Gene3D G3DSA:2.40.30.10 280 396 5.6E-24 T 13-10-2018 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 SUPERFAMILY SSF50447 259 388 2.51E-20 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 SUPERFAMILY SSF54980 594 683 7.19E-23 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Gene3D G3DSA:3.30.230.10 475 679 7.5E-82 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 SUPERFAMILY SSF54980 396 472 1.4E-14 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 SMART SM00838 591 679 2.4E-25 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Gene3D G3DSA:3.30.70.240 595 666 7.5E-82 T 13-10-2018 Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 SUPERFAMILY SSF52540 4 274 4.28E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Pfam PF00679 Elongation factor G C-terminus 591 678 1.2E-24 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like Trebr_1888 b19356fd297fcae4c466762e085a26cf 693 Gene3D G3DSA:3.40.50.300 2 279 5.1E-66 T 13-10-2018 Trebr_1289 dc8f37305f19f1bcf4ec0287035aeee3 557 Pfam PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 75 360 9.6E-55 T 13-10-2018 IPR025584 Carbohydrate-binding domain-containing protein Cthe_2159 Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 SUPERFAMILY SSF53633 5 302 2.23E-36 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 PIRSF PIRSF000423 2 450 3.5E-95 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 Pfam PF00696 Amino acid kinase family 46 199 1.2E-13 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 SUPERFAMILY SSF55729 307 429 3.78E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 Pfam PF00583 Acetyltransferase (GNAT) family 346 420 5.8E-5 T 13-10-2018 IPR000182 GNAT domain Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 Gene3D G3DSA:3.40.630.30 303 450 1.5E-33 T 13-10-2018 Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 Gene3D G3DSA:3.40.1160.10 10 302 6.1E-61 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 450 89.601 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Trebr_2585 5c0a550e5d20e304ba73fc75dc09501d 450 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 12 448 7.6E-81 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Trebr_1072 fa795cc1881607ce90c2adcde3c2d598 47 Pfam PF07295 Zinc-ribbon containing domain 2 45 7.9E-12 T 13-10-2018 IPR009912 Zinc-ribbon containing domain Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 707 770 3.6E-9 T 13-10-2018 IPR005194 Glycoside hydrolase family 65, C-terminal Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 Gene3D G3DSA:2.60.420.10 689 770 5.4E-15 T 13-10-2018 Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 Gene3D G3DSA:2.70.98.40 6 263 1.2E-56 T 13-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 SUPERFAMILY SSF74650 6 258 3.77E-49 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 18 257 1.5E-50 T 13-10-2018 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 PIRSF PIRSF036289 3 777 3.5E-198 T 13-10-2018 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 324 702 2.3E-110 T 13-10-2018 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 Gene3D G3DSA:1.50.10.10 318 688 3.7E-122 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_0190 3a70997ed5fce224245697dfe737ec8e 785 SUPERFAMILY SSF48208 281 740 4.65E-106 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_0832 6ecf37a5e4dbd24e88463fb7dba5d858 310 Pfam PF02401 LytB protein 7 305 2.8E-85 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Trebr_0832 6ecf37a5e4dbd24e88463fb7dba5d858 310 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 5 309 31.487 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Trebr_0832 6ecf37a5e4dbd24e88463fb7dba5d858 310 Gene3D G3DSA:3.40.1010.20 7 305 4.0E-93 T 13-10-2018 Trebr_0832 6ecf37a5e4dbd24e88463fb7dba5d858 310 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 7 306 4.9E-84 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Trebr_0832 6ecf37a5e4dbd24e88463fb7dba5d858 310 Gene3D G3DSA:3.40.50.11270 16 103 4.0E-93 T 13-10-2018 Trebr_0832 6ecf37a5e4dbd24e88463fb7dba5d858 310 Gene3D G3DSA:3.40.1010.20 104 220 4.0E-93 T 13-10-2018 Trebr_0515 4b1866841574a2ab84679916b6985f54 421 Gene3D G3DSA:3.40.640.10 1 283 5.9E-92 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0515 4b1866841574a2ab84679916b6985f54 421 PIRSF PIRSF001434 1 421 1.3E-117 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Trebr_0515 4b1866841574a2ab84679916b6985f54 421 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 3 419 1.5E-169 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 Trebr_0515 4b1866841574a2ab84679916b6985f54 421 SUPERFAMILY SSF53383 1 419 2.45E-107 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0515 4b1866841574a2ab84679916b6985f54 421 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 418 1.1E-119 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Trebr_0515 4b1866841574a2ab84679916b6985f54 421 Gene3D G3DSA:3.90.1150.10 287 421 2.6E-40 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1217 86c981e0810a6d32e6b52f908dcd5799 714 Pfam PF07670 Nucleoside recognition 357 451 7.5E-11 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Trebr_1217 86c981e0810a6d32e6b52f908dcd5799 714 Pfam PF07670 Nucleoside recognition 518 650 7.2E-28 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Trebr_1217 86c981e0810a6d32e6b52f908dcd5799 714 Pfam PF07664 Ferrous iron transport protein B C terminus 461 513 5.0E-20 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Trebr_1217 86c981e0810a6d32e6b52f908dcd5799 714 Pfam PF02421 Ferrous iron transport protein B 4 154 1.2E-64 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 Trebr_1217 86c981e0810a6d32e6b52f908dcd5799 714 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 2 155 8.0E-15 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_1217 86c981e0810a6d32e6b52f908dcd5799 714 SUPERFAMILY SSF52540 1 163 4.23E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1217 86c981e0810a6d32e6b52f908dcd5799 714 Gene3D G3DSA:3.40.50.300 2 187 1.4E-45 T 13-10-2018 Trebr_1217 86c981e0810a6d32e6b52f908dcd5799 714 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 9 647 6.8E-171 T 13-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 388 58.111 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 266 274 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 Gene3D G3DSA:3.30.300.10 13 278 2.5E-174 T 13-10-2018 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 Gene3D G3DSA:3.30.300.10 105 382 2.5E-174 T 13-10-2018 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 Pfam PF02772 S-adenosylmethionine synthetase, central domain 121 238 3.5E-46 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 SUPERFAMILY SSF55973 5 110 2.04E-42 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 PIRSF PIRSF000497 1 389 7.2E-172 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 103 1.5E-39 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 SUPERFAMILY SSF55973 240 387 1.45E-69 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 Gene3D G3DSA:3.30.300.10 8 241 2.5E-174 T 13-10-2018 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 122 132 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 240 377 5.4E-69 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 387 4.1E-186 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0348 9e10595ddf2f523a0b7917ed385f9fe2 390 SUPERFAMILY SSF55973 121 239 1.61E-49 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Trebr_0161 9b5c163c7003246c9c2232635b751930 290 Gene3D G3DSA:3.40.630.30 176 287 7.6E-10 T 13-10-2018 Trebr_0161 9b5c163c7003246c9c2232635b751930 290 SUPERFAMILY SSF55729 174 285 1.03E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0161 9b5c163c7003246c9c2232635b751930 290 Pfam PF00583 Acetyltransferase (GNAT) family 208 273 2.6E-6 T 13-10-2018 IPR000182 GNAT domain Trebr_0061 8b2599ab8032ac7df4ef9e6a072fd22d 227 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 85 159 1.5E-7 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Trebr_0061 8b2599ab8032ac7df4ef9e6a072fd22d 227 Gene3D G3DSA:2.30.110.10 84 202 1.7E-15 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Trebr_0061 8b2599ab8032ac7df4ef9e6a072fd22d 227 SUPERFAMILY SSF50475 84 213 4.49E-15 T 13-10-2018 Trebr_2196 42ebd4c2939a925b5970ac03d1d37bc7 501 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 246 326 5.1E-19 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Trebr_2196 42ebd4c2939a925b5970ac03d1d37bc7 501 SUPERFAMILY SSF53223 232 338 5.7E-24 T 13-10-2018 Trebr_2196 42ebd4c2939a925b5970ac03d1d37bc7 501 SUPERFAMILY SSF51735 339 499 2.41E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2196 42ebd4c2939a925b5970ac03d1d37bc7 501 Pfam PF01487 Type I 3-dehydroquinase 11 214 9.5E-36 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Trebr_2196 42ebd4c2939a925b5970ac03d1d37bc7 501 Gene3D G3DSA:3.40.50.10860 244 500 4.1E-68 T 13-10-2018 Trebr_2196 42ebd4c2939a925b5970ac03d1d37bc7 501 Gene3D G3DSA:3.20.20.70 5 240 2.0E-38 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_2196 42ebd4c2939a925b5970ac03d1d37bc7 501 Gene3D G3DSA:3.40.50.720 338 480 4.1E-68 T 13-10-2018 Trebr_2196 42ebd4c2939a925b5970ac03d1d37bc7 501 SUPERFAMILY SSF51569 7 215 6.23E-34 T 13-10-2018 Trebr_0344 34373c49045565d22386c7d7535fc175 178 SUPERFAMILY SSF110849 9 140 1.29E-24 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Trebr_0344 34373c49045565d22386c7d7535fc175 178 SMART SM00470 11 107 1.4E-6 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_0344 34373c49045565d22386c7d7535fc175 178 Pfam PF02195 ParB-like nuclease domain 12 106 2.7E-12 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_0344 34373c49045565d22386c7d7535fc175 178 Gene3D G3DSA:3.90.1530.10 4 99 1.1E-5 T 13-10-2018 Trebr_0204 3df7dd4c20eb7902f64e195280a9594f 185 Gene3D G3DSA:3.40.50.360 13 179 2.8E-52 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0204 3df7dd4c20eb7902f64e195280a9594f 185 Pfam PF12682 Flavodoxin 41 173 3.3E-24 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Trebr_0204 3df7dd4c20eb7902f64e195280a9594f 185 SUPERFAMILY SSF52218 23 149 2.33E-19 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 Gene3D G3DSA:3.90.190.20 342 505 2.3E-44 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 Gene3D G3DSA:3.40.1190.10 103 319 1.5E-41 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 Gene3D G3DSA:3.40.50.720 9 101 3.7E-18 T 13-10-2018 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 SUPERFAMILY SSF51984 14 99 5.89E-13 T 13-10-2018 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 Pfam PF02875 Mur ligase family, glutamate ligase domain 348 431 7.6E-20 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 Pfam PF01225 Mur ligase family, catalytic domain 14 115 2.9E-16 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 Pfam PF08245 Mur ligase middle domain 119 306 1.8E-13 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 SUPERFAMILY SSF53244 346 500 1.05E-30 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 SUPERFAMILY SSF53623 103 307 2.29E-34 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_1179 f0cb0020cc53319fbc4bff0c4c08ae60 505 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 14 497 2.0E-114 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 Gene3D G3DSA:3.40.50.720 8 360 1.1E-136 T 13-10-2018 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 171 344 8.6E-35 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 SMART SM00859 7 139 3.5E-27 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 8 137 5.0E-30 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 241 255 - T 13-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 Gene3D G3DSA:3.30.360.10 160 342 1.1E-136 T 13-10-2018 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 TIGRFAM TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase 7 360 1.3E-112 T 13-10-2018 IPR005676 Aspartate-semialdehyde dehydrogenase, peptidoglycan lacking GO:0050661|GO:0055114 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 SUPERFAMILY SSF55347 159 347 7.14E-32 T 13-10-2018 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 PIRSF PIRSF000148 5 365 3.4E-93 T 13-10-2018 Trebr_0648 23b5b505aed207f8f9bea2ef30de7a66 368 SUPERFAMILY SSF51735 6 184 1.0E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 PRINTS PR00475 Hexokinase family signature 133 158 6.2E-25 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 PRINTS PR00475 Hexokinase family signature 353 375 6.2E-25 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 PRINTS PR00475 Hexokinase family signature 71 87 6.2E-25 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 PRINTS PR00475 Hexokinase family signature 214 228 6.2E-25 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 PRINTS PR00475 Hexokinase family signature 277 299 6.2E-25 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 PRINTS PR00475 Hexokinase family signature 186 202 6.2E-25 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 Gene3D G3DSA:3.40.367.20 22 431 2.5E-70 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 SUPERFAMILY SSF53067 213 442 8.98E-36 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 Pfam PF03727 Hexokinase 214 442 1.3E-38 T 13-10-2018 IPR022673 Hexokinase, C-terminal GO:0005524|GO:0005975|GO:0016773 KEGG: 00010+2.7.1.1|KEGG: 00051+2.7.1.1|KEGG: 00052+2.7.1.1|KEGG: 00500+2.7.1.1|KEGG: 00520+2.7.1.1|KEGG: 00521+2.7.1.1|KEGG: 00524+2.7.1.1|Reactome: R-HSA-70171 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 Pfam PF00349 Hexokinase 22 199 1.7E-17 T 13-10-2018 IPR022672 Hexokinase, N-terminal GO:0005524|GO:0005975|GO:0016773 KEGG: 00010+2.7.1.1|KEGG: 00051+2.7.1.1|KEGG: 00052+2.7.1.1|KEGG: 00500+2.7.1.1|KEGG: 00520+2.7.1.1|KEGG: 00521+2.7.1.1|KEGG: 00524+2.7.1.1|Reactome: R-HSA-70171 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 Gene3D G3DSA:3.30.420.40 57 439 2.5E-70 T 13-10-2018 Trebr_1135 d5f3f93e94e52f5b31e752f3b362af40 444 SUPERFAMILY SSF53067 16 200 2.0E-26 T 13-10-2018 Trebr_2321 ad149bcf1e3af1d788efffc5a3e353b5 213 Pfam PF00578 AhpC/TSA family 9 136 1.4E-31 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Trebr_2321 ad149bcf1e3af1d788efffc5a3e353b5 213 Gene3D G3DSA:3.40.30.10 7 146 1.3E-43 T 13-10-2018 Trebr_2321 ad149bcf1e3af1d788efffc5a3e353b5 213 SUPERFAMILY SSF52833 5 198 4.29E-64 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_2321 ad149bcf1e3af1d788efffc5a3e353b5 213 PIRSF PIRSF000239 1 213 3.7E-76 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Trebr_2321 ad149bcf1e3af1d788efffc5a3e353b5 213 Hamap MF_00401 Peroxiredoxin. 6 213 46.74 T 13-10-2018 IPR022915 Peroxiredoxin, TDXH subfamily GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Trebr_2321 ad149bcf1e3af1d788efffc5a3e353b5 213 Gene3D G3DSA:3.30.1020.20 147 213 1.0E-24 T 13-10-2018 Trebr_2321 ad149bcf1e3af1d788efffc5a3e353b5 213 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 158 197 1.9E-12 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 27 726 4.4E-206 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 Gene3D G3DSA:3.40.50.300 507 691 1.8E-53 T 13-10-2018 Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 SMART SM00490 565 650 5.2E-21 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 SMART SM00487 295 509 8.7E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 Gene3D G3DSA:3.40.50.300 282 506 7.6E-70 T 13-10-2018 Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 Gene3D G3DSA:2.40.50.140 46 136 6.1E-8 T 13-10-2018 Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 Pfam PF00270 DEAD/DEAH box helicase 336 483 9.0E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 SUPERFAMILY SSF50249 5 181 7.37E-37 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 SUPERFAMILY SSF52540 360 660 6.06E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 Pfam PF00271 Helicase conserved C-terminal domain 560 649 7.3E-17 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_0795 fa3051b9d825502a4ffb443cfa57aa63 744 Pfam PF17191 RecG wedge domain 13 178 1.5E-22 T 13-10-2018 IPR033454 RecG, wedge domain Trebr_2555 94fe638edc15eb1718c7a0435d21265d 448 SMART SM00656 128 377 6.8E-41 T 13-10-2018 IPR002022 Pectate lyase Trebr_2555 94fe638edc15eb1718c7a0435d21265d 448 Pfam PF00544 Pectate lyase 163 371 7.8E-42 T 13-10-2018 IPR002022 Pectate lyase Trebr_2555 94fe638edc15eb1718c7a0435d21265d 448 Gene3D G3DSA:2.160.20.10 47 444 2.7E-101 T 13-10-2018 IPR012334 Pectin lyase fold Trebr_2555 94fe638edc15eb1718c7a0435d21265d 448 SUPERFAMILY SSF51126 51 444 7.44E-68 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor Trebr_0554 db57545676f3f3d095a9f1192b60a43c 326 SUPERFAMILY SSF51735 1 322 2.29E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0554 db57545676f3f3d095a9f1192b60a43c 326 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 322 5.9E-104 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Trebr_0554 db57545676f3f3d095a9f1192b60a43c 326 Gene3D G3DSA:3.40.50.720 3 251 1.0E-105 T 13-10-2018 Trebr_0554 db57545676f3f3d095a9f1192b60a43c 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 251 9.6E-48 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Trebr_0554 db57545676f3f3d095a9f1192b60a43c 326 Gene3D G3DSA:3.90.25.10 172 304 1.0E-105 T 13-10-2018 Trebr_2216 808730a4c55dff9e8969ea76202237b1 370 Gene3D G3DSA:3.40.640.10 17 260 1.4E-81 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_2216 808730a4c55dff9e8969ea76202237b1 370 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 368 1.3E-143 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Trebr_2216 808730a4c55dff9e8969ea76202237b1 370 PIRSF PIRSF000525 1 370 5.7E-143 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Trebr_2216 808730a4c55dff9e8969ea76202237b1 370 Pfam PF00266 Aminotransferase class-V 4 358 4.2E-54 T 13-10-2018 IPR000192 Aminotransferase class V domain Trebr_2216 808730a4c55dff9e8969ea76202237b1 370 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 190 209 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Trebr_2216 808730a4c55dff9e8969ea76202237b1 370 SUPERFAMILY SSF53383 1 368 3.67E-105 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_2216 808730a4c55dff9e8969ea76202237b1 370 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 369 47.641 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Trebr_2216 808730a4c55dff9e8969ea76202237b1 370 Gene3D G3DSA:3.90.1150.10 262 370 3.4E-38 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0575 90afccba1e92479ce6f1161f734d1762 676 SMART SM00304 229 281 2.5E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0575 90afccba1e92479ce6f1161f734d1762 676 Gene3D G3DSA:1.10.287.950 332 597 9.4E-43 T 13-10-2018 Trebr_0575 90afccba1e92479ce6f1161f734d1762 676 Gene3D G3DSA:1.20.1480.50 188 285 1.5E-5 T 13-10-2018 Trebr_0575 90afccba1e92479ce6f1161f734d1762 676 SUPERFAMILY SSF58104 249 576 4.05E-43 T 13-10-2018 Trebr_0575 90afccba1e92479ce6f1161f734d1762 676 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 384 549 2.0E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0575 90afccba1e92479ce6f1161f734d1762 676 SMART SM00283 324 568 1.5E-26 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 Pfam PF00381 PTS HPr component phosphorylation site 3 82 1.1E-27 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 3 82 3.4E-30 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.4E-16 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.4E-16 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.4E-16 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 Gene3D G3DSA:3.30.1340.10 1 88 1.1E-30 T 13-10-2018 IPR035895 HPr-like superfamily Trebr_2131 b9403195e61da58c84f7ddc3dd835840 88 SUPERFAMILY SSF55594 3 87 1.57E-27 T 13-10-2018 IPR035895 HPr-like superfamily Trebr_2472 157e77fde8363e6d0a66e403ff6b7e7c 269 Gene3D G3DSA:1.10.1660.10 1 110 1.7E-23 T 13-10-2018 Trebr_2472 157e77fde8363e6d0a66e403ff6b7e7c 269 SUPERFAMILY SSF46955 2 103 4.03E-25 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily Trebr_2472 157e77fde8363e6d0a66e403ff6b7e7c 269 SMART SM00422 2 72 2.6E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_2472 157e77fde8363e6d0a66e403ff6b7e7c 269 SMART SM00871 114 269 2.2E-10 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding Trebr_2472 157e77fde8363e6d0a66e403ff6b7e7c 269 Pfam PF06445 GyrI-like small molecule binding domain 118 268 2.8E-9 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain Trebr_2472 157e77fde8363e6d0a66e403ff6b7e7c 269 SUPERFAMILY SSF55136 167 268 3.84E-14 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_2472 157e77fde8363e6d0a66e403ff6b7e7c 269 Gene3D G3DSA:3.20.80.10 111 269 3.6E-21 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_2472 157e77fde8363e6d0a66e403ff6b7e7c 269 Pfam PF13411 MerR HTH family regulatory protein 2 70 1.2E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_0569 af1a399aec02802d9dfe76c69c79a15f 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 3.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_0569 af1a399aec02802d9dfe76c69c79a15f 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 3.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_0569 af1a399aec02802d9dfe76c69c79a15f 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 3.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_0569 af1a399aec02802d9dfe76c69c79a15f 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 3.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_0569 af1a399aec02802d9dfe76c69c79a15f 151 Gene3D G3DSA:1.10.10.10 2 140 1.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0569 af1a399aec02802d9dfe76c69c79a15f 151 SMART SM00347 26 129 8.4E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_0569 af1a399aec02802d9dfe76c69c79a15f 151 SUPERFAMILY SSF46785 8 143 1.44E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0569 af1a399aec02802d9dfe76c69c79a15f 151 Pfam PF01047 MarR family 38 93 4.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_0209 0753d10d904334982f7279453f469413 321 SUPERFAMILY SSF51430 2 317 2.36E-95 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Trebr_0209 0753d10d904334982f7279453f469413 321 PRINTS PR00069 Aldo-keto reductase signature 48 72 2.9E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0209 0753d10d904334982f7279453f469413 321 PRINTS PR00069 Aldo-keto reductase signature 108 126 2.9E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0209 0753d10d904334982f7279453f469413 321 PRINTS PR00069 Aldo-keto reductase signature 139 156 2.9E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0209 0753d10d904334982f7279453f469413 321 Gene3D G3DSA:3.20.20.100 1 318 3.1E-107 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Trebr_0209 0753d10d904334982f7279453f469413 321 Pfam PF00248 Aldo/keto reductase family 16 311 1.8E-66 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain Trebr_1019 b180076819708a2ea127a8d685b089ef 559 Pfam PF07508 Recombinase 206 326 5.3E-24 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Trebr_1019 b180076819708a2ea127a8d685b089ef 559 Gene3D G3DSA:1.10.10.2600 166 330 2.2E-19 T 13-10-2018 IPR038109 DNA-binding recombinase domain superfamily Trebr_1019 b180076819708a2ea127a8d685b089ef 559 Gene3D G3DSA:3.40.50.1390 21 140 7.6E-31 T 13-10-2018 Trebr_1019 b180076819708a2ea127a8d685b089ef 559 Pfam PF13408 Recombinase zinc beta ribbon domain 340 397 4.3E-14 T 13-10-2018 IPR025827 Recombinase zinc beta ribbon domain Trebr_1019 b180076819708a2ea127a8d685b089ef 559 SMART SM00857 25 182 9.3E-27 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Trebr_1019 b180076819708a2ea127a8d685b089ef 559 Pfam PF14287 Domain of unknown function (DUF4368) 498 530 5.4E-8 T 13-10-2018 IPR025378 Domain of unknown function DUF4368 Trebr_1019 b180076819708a2ea127a8d685b089ef 559 SUPERFAMILY SSF53041 25 182 3.4E-24 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Trebr_1019 b180076819708a2ea127a8d685b089ef 559 Pfam PF00239 Resolvase, N terminal domain 27 181 9.6E-20 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Trebr_1705 7b27ec069583ccbfb2761fb00d1a3eed 157 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 146 5.8E-30 T 13-10-2018 IPR002178 PTS EIIA type-2 domain Trebr_1705 7b27ec069583ccbfb2761fb00d1a3eed 157 SUPERFAMILY SSF55804 1 148 2.88E-30 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_1705 7b27ec069583ccbfb2761fb00d1a3eed 157 Gene3D G3DSA:3.40.930.10 1 148 7.7E-38 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_1705 7b27ec069583ccbfb2761fb00d1a3eed 157 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain Trebr_1817 148c9a954f245e7fecf3f0f97b73a6e9 307 Pfam PF00005 ABC transporter 30 177 6.1E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1817 148c9a954f245e7fecf3f0f97b73a6e9 307 SMART SM00382 38 225 2.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1817 148c9a954f245e7fecf3f0f97b73a6e9 307 Gene3D G3DSA:3.40.50.300 1 249 2.6E-58 T 13-10-2018 Trebr_1817 148c9a954f245e7fecf3f0f97b73a6e9 307 SUPERFAMILY SSF52540 6 236 1.98E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1817 148c9a954f245e7fecf3f0f97b73a6e9 307 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1759 883aab6a45e5bc336ed6258828e6dcf2 398 SUPERFAMILY SSF110997 325 395 2.62E-6 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Trebr_1607 0420241b9e1411e7f35be15a86c89c21 447 Pfam PF02120 Flagellar hook-length control protein FliK 317 389 3.4E-14 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Trebr_1607 0420241b9e1411e7f35be15a86c89c21 447 Gene3D G3DSA:3.30.750.140 293 407 9.3E-10 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily Trebr_2170 306d082a7a576494ee6bf5337bc10b64 283 Pfam PF06182 ABC-2 family transporter protein 49 282 6.3E-23 T 13-10-2018 IPR010390 Protein of unknown function DUF990 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 266 339 5.9E-29 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 350 429 2.4E-14 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 Gene3D G3DSA:3.20.20.70 1 224 6.5E-46 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 289 338 4.0E-13 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 SUPERFAMILY SSF141734 242 344 9.02E-38 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 Gene3D G3DSA:1.10.287.1080 344 431 1.2E-19 T 13-10-2018 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 SUPERFAMILY SSF101386 347 429 2.06E-17 T 13-10-2018 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 348 425 7.0E-19 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 Gene3D G3DSA:3.10.20.400 232 330 1.1E-30 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 Pfam PF00977 Histidine biosynthesis protein 1 234 4.8E-42 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Trebr_2361 e32f508ca4134d464bcc57434337b516 431 SUPERFAMILY SSF51366 2 240 3.18E-36 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Trebr_0474 8f80220817ec3dc3d38b6203321ac058 371 Pfam PF00704 Glycosyl hydrolases family 18 151 353 2.3E-25 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 Trebr_0474 8f80220817ec3dc3d38b6203321ac058 371 SMART SM00636 68 354 3.2E-6 T 13-10-2018 IPR011583 Chitinase II GO:0008061 Trebr_0474 8f80220817ec3dc3d38b6203321ac058 371 Gene3D G3DSA:3.20.20.80 96 360 1.9E-49 T 13-10-2018 Trebr_0474 8f80220817ec3dc3d38b6203321ac058 371 Gene3D G3DSA:3.10.50.10 273 325 1.9E-49 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily Trebr_0474 8f80220817ec3dc3d38b6203321ac058 371 SUPERFAMILY SSF51445 150 363 3.63E-32 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0980 84aac7aa0fb22c1c55bf659cb3495181 211 Gene3D G3DSA:1.10.3720.10 2 209 1.9E-51 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0980 84aac7aa0fb22c1c55bf659cb3495181 211 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 103 3.0E-21 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Trebr_0980 84aac7aa0fb22c1c55bf659cb3495181 211 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 207 3.3E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0980 84aac7aa0fb22c1c55bf659cb3495181 211 SUPERFAMILY SSF161098 10 192 1.24E-43 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1792 7c41381eaf6e5053f7c5476ca5f67caa 195 SUPERFAMILY SSF47413 5 72 6.4E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1792 7c41381eaf6e5053f7c5476ca5f67caa 195 Gene3D G3DSA:2.60.40.730 83 192 6.3E-15 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 Trebr_1792 7c41381eaf6e5053f7c5476ca5f67caa 195 SUPERFAMILY SSF49367 116 192 1.19E-13 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 Trebr_1792 7c41381eaf6e5053f7c5476ca5f67caa 195 Gene3D G3DSA:1.10.260.40 3 82 9.3E-18 T 13-10-2018 Trebr_1792 7c41381eaf6e5053f7c5476ca5f67caa 195 Pfam PF01381 Helix-turn-helix 10 62 3.6E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1792 7c41381eaf6e5053f7c5476ca5f67caa 195 SMART SM00530 9 64 1.3E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2339 c61ad4cf6a2e009a900d690bbff59c19 408 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 130 148 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Trebr_2339 c61ad4cf6a2e009a900d690bbff59c19 408 Pfam PF01207 Dihydrouridine synthase (Dus) 214 396 2.7E-38 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Trebr_2339 c61ad4cf6a2e009a900d690bbff59c19 408 Pfam PF01207 Dihydrouridine synthase (Dus) 19 93 8.0E-15 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Trebr_2339 c61ad4cf6a2e009a900d690bbff59c19 408 Pfam PF01207 Dihydrouridine synthase (Dus) 129 168 2.2E-10 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Trebr_2339 c61ad4cf6a2e009a900d690bbff59c19 408 Gene3D G3DSA:3.20.20.70 196 339 9.7E-35 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_2339 c61ad4cf6a2e009a900d690bbff59c19 408 SUPERFAMILY SSF51395 5 176 2.5E-15 T 13-10-2018 Trebr_2339 c61ad4cf6a2e009a900d690bbff59c19 408 Gene3D G3DSA:1.10.1200.80 343 403 6.2E-6 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 Trebr_2339 c61ad4cf6a2e009a900d690bbff59c19 408 SUPERFAMILY SSF51395 126 402 2.16E-47 T 13-10-2018 Trebr_0315 99b545afbcc31c167fc18e5b8769adaf 139 Gene3D G3DSA:3.40.50.1010 1 127 5.7E-7 T 13-10-2018 Trebr_0315 99b545afbcc31c167fc18e5b8769adaf 139 SUPERFAMILY SSF88723 1 132 8.41E-14 T 13-10-2018 IPR029060 PIN-like domain superfamily Trebr_0315 99b545afbcc31c167fc18e5b8769adaf 139 Pfam PF13470 PIN domain 3 116 6.4E-14 T 13-10-2018 IPR002716 PIN domain Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 9.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 9.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 SUPERFAMILY SSF46689 232 281 4.12E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 Pfam PF07883 Cupin domain 27 77 7.0E-10 T 13-10-2018 IPR013096 Cupin 2, conserved barrel Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 Pfam PF12833 Helix-turn-helix domain 202 280 1.2E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 SMART SM00342 196 279 1.1E-30 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 Gene3D G3DSA:2.60.120.10 19 94 1.4E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 SUPERFAMILY SSF46689 182 229 1.08E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 SUPERFAMILY SSF51182 24 81 2.67E-12 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 233 275 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 Gene3D G3DSA:1.10.10.60 180 229 4.6E-12 T 13-10-2018 Trebr_0129 93612a9dc7b1eb73995cb374ad035058 288 Gene3D G3DSA:1.10.10.60 230 283 3.4E-18 T 13-10-2018 Trebr_0235 045002183ccdd2c83c188b29923501fe 283 Gene3D G3DSA:3.40.50.300 2 247 1.3E-48 T 13-10-2018 Trebr_0235 045002183ccdd2c83c188b29923501fe 283 SMART SM00382 27 205 6.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0235 045002183ccdd2c83c188b29923501fe 283 SUPERFAMILY SSF52540 3 217 2.4E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0235 045002183ccdd2c83c188b29923501fe 283 Pfam PF00005 ABC transporter 18 157 2.4E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1012 2411dbe47662998d44b9dcfc276dd408 386 Gene3D G3DSA:1.20.1250.20 198 385 2.3E-33 T 13-10-2018 Trebr_1012 2411dbe47662998d44b9dcfc276dd408 386 SUPERFAMILY SSF103473 4 384 4.71E-45 T 13-10-2018 IPR036259 MFS transporter superfamily Trebr_1012 2411dbe47662998d44b9dcfc276dd408 386 Pfam PF07690 Major Facilitator Superfamily 10 348 2.0E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Trebr_1012 2411dbe47662998d44b9dcfc276dd408 386 Gene3D G3DSA:1.20.1250.20 2 185 7.7E-21 T 13-10-2018 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 254 408 6.0E-57 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 Pfam PF02542 YgbB family 253 406 3.0E-55 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 127 134 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 SUPERFAMILY SSF69765 252 409 9.81E-57 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 287 302 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 243 3.3E-41 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 SUPERFAMILY SSF53448 10 244 1.08E-38 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 Gene3D G3DSA:3.90.550.10 8 248 1.0E-60 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 253 408 33.632 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 Hamap MF_01520 Bifunctional enzyme IspD/IspF [ispDF]. 8 409 33.569 T 13-10-2018 IPR026596 Bifunctional enzyme IspD/IspF KEGG: 00900+4.6.1.12+2.7.7.60|MetaCyc: PWY-7560 Trebr_1946 4cb6705787744557231eb7a1dddbbe5a 412 Gene3D G3DSA:3.30.1330.50 251 411 9.2E-60 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 13-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.6E-10 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.6E-10 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.6E-10 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.6E-10 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 19.895 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 59 1.0E-20 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 Gene3D G3DSA:1.20.5.1150 16 66 9.6E-12 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 Pfam PF01165 Ribosomal protein S21 4 56 6.0E-19 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1454 8c495790819d4f1c906c624a421912ba 72 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 55 1.0E-11 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0353 d26c108068540074a53f18ba7266a4a3 426 Gene3D G3DSA:3.40.50.1820 7 425 1.4E-95 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_0353 d26c108068540074a53f18ba7266a4a3 426 SUPERFAMILY SSF53474 7 335 5.2E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2104 0fe30761ca226ec0be0cb1d2f9eaf6d2 287 SUPERFAMILY SSF51445 55 274 2.13E-29 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2104 0fe30761ca226ec0be0cb1d2f9eaf6d2 287 Gene3D G3DSA:3.20.20.70 27 286 4.4E-30 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_2104 0fe30761ca226ec0be0cb1d2f9eaf6d2 287 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 65 - T 13-10-2018 IPR010916 TonB box, conserved site Trebr_2104 0fe30761ca226ec0be0cb1d2f9eaf6d2 287 Pfam PF03537 Glycoside-hydrolase family GH114 61 279 5.4E-25 T 13-10-2018 IPR004352 Glycoside-hydrolase family GH114, TIM-barrel domain Trebr_1238 93a7d8914709b7234c85c5951fa54ca6 278 Pfam PF17131 Outer membrane lipoprotein-sorting protein 86 274 3.3E-65 T 13-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein Trebr_1238 93a7d8914709b7234c85c5951fa54ca6 278 Gene3D G3DSA:2.50.20.10 31 274 4.1E-76 T 13-10-2018 Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 Pfam PF03466 LysR substrate binding domain 97 282 5.9E-21 T 13-10-2018 IPR005119 LysR, substrate-binding Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 2.9E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 SUPERFAMILY SSF46785 1 84 4.08E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 SUPERFAMILY SSF53850 93 287 1.28E-21 T 13-10-2018 Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 Gene3D G3DSA:3.40.190.290 93 293 3.2E-25 T 13-10-2018 Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_1572 5cb23fe2e0924a48b1d963ed9182991e 295 Gene3D G3DSA:1.10.10.10 1 92 3.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2205 acac8bf80e226ffb3044e78420f86907 592 Gene3D G3DSA:3.40.50.1700 478 592 1.0E-5 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 Trebr_2205 acac8bf80e226ffb3044e78420f86907 592 SUPERFAMILY SSF51445 63 409 2.74E-76 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2205 acac8bf80e226ffb3044e78420f86907 592 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 81 404 6.7E-73 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Trebr_2205 acac8bf80e226ffb3044e78420f86907 592 Gene3D G3DSA:3.20.20.300 75 408 8.4E-91 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 Trebr_0726 fca22294665017b18146248953fe6fee 195 SUPERFAMILY SSF47413 10 77 3.94E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0726 fca22294665017b18146248953fe6fee 195 Gene3D G3DSA:1.10.260.40 3 78 1.5E-18 T 13-10-2018 Trebr_0726 fca22294665017b18146248953fe6fee 195 Pfam PF07883 Cupin domain 122 188 2.5E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel Trebr_0726 fca22294665017b18146248953fe6fee 195 Gene3D G3DSA:2.60.120.10 79 188 3.1E-16 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0726 fca22294665017b18146248953fe6fee 195 SUPERFAMILY SSF51182 64 193 1.03E-23 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily Trebr_0726 fca22294665017b18146248953fe6fee 195 Pfam PF01381 Helix-turn-helix 17 71 2.6E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0726 fca22294665017b18146248953fe6fee 195 SMART SM00530 16 71 1.1E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 8 198 40.556 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 SUPERFAMILY SSF52096 15 197 3.98E-70 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 Pfam PF00574 Clp protease 18 197 8.9E-79 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 Gene3D G3DSA:3.90.226.10 1 202 1.7E-83 T 13-10-2018 Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 95 106 - T 13-10-2018 IPR018215 ClpP, Ser active site Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 PRINTS PR00127 Clp protease catalytic subunit P signature 64 84 2.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 PRINTS PR00127 Clp protease catalytic subunit P signature 173 192 2.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 PRINTS PR00127 Clp protease catalytic subunit P signature 116 135 2.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 PRINTS PR00127 Clp protease catalytic subunit P signature 95 112 2.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 PRINTS PR00127 Clp protease catalytic subunit P signature 24 39 2.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Trebr_1577 2af146c9f8e9262ab54bf0a53a298bbf 204 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 117 130 - T 13-10-2018 IPR033135 ClpP, histidine active site Trebr_0234 74ebc19e87eb3014d172371c3cfe1fda 215 Pfam PF13346 ABC-2 family transporter protein 3 168 4.1E-12 T 13-10-2018 IPR025699 ABC-2 membrane transporter-like Trebr_2518 b0496f92769983ea699d51e0f839cb7c 328 Gene3D G3DSA:3.20.20.70 86 327 2.1E-26 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_2518 b0496f92769983ea699d51e0f839cb7c 328 SUPERFAMILY SSF51395 112 324 1.71E-22 T 13-10-2018 Trebr_2518 b0496f92769983ea699d51e0f839cb7c 328 Pfam PF01070 FMN-dependent dehydrogenase 205 318 6.5E-23 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Gene3D G3DSA:1.10.3500.10 125 500 1.2E-126 T 13-10-2018 IPR023323 Tex-like domain superfamily Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Pfam PF12836 Helix-hairpin-helix motif 493 556 4.5E-28 T 13-10-2018 Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Pfam PF09371 Tex-like protein N-terminal domain 22 209 3.6E-56 T 13-10-2018 IPR018974 Tex-like protein, N-terminal Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 SUPERFAMILY SSF47781 472 560 2.11E-27 T 13-10-2018 IPR010994 RuvA domain 2-like Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 SUPERFAMILY SSF53098 327 470 3.79E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Gene3D G3DSA:2.40.50.140 629 719 5.9E-25 T 13-10-2018 Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 SMART SM00316 644 715 1.2E-24 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Gene3D G3DSA:3.30.420.140 330 453 1.2E-126 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Gene3D G3DSA:1.10.10.650 13 122 1.2E-30 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Pfam PF00575 S1 RNA binding domain 643 715 1.8E-16 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 SUPERFAMILY SSF50249 630 716 4.18E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 SUPERFAMILY SSF47781 563 626 3.33E-12 T 13-10-2018 IPR010994 RuvA domain 2-like Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Pfam PF16921 Tex protein YqgF-like domain 332 453 3.8E-41 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 Gene3D G3DSA:1.10.150.310 501 625 2.6E-43 T 13-10-2018 Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 SMART SM00732 331 426 1.8E-27 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Trebr_2400 b57b4062ad258a933104f3efb590a33f 813 SUPERFAMILY SSF158832 15 325 2.75E-90 T 13-10-2018 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 Gene3D G3DSA:2.40.37.10 243 390 7.6E-49 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 TIGRFAM TIGR00492 alr: alanine racemase 13 389 1.0E-113 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 Hamap MF_01201 Alanine racemase. 10 389 33.942 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 SUPERFAMILY SSF51419 17 243 3.43E-66 T 13-10-2018 IPR029066 PLP-binding barrel Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 Pfam PF01168 Alanine racemase, N-terminal domain 17 240 2.4E-70 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 SUPERFAMILY SSF50621 253 389 2.69E-42 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 SMART SM01005 260 389 6.0E-59 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 Pfam PF00842 Alanine racemase, C-terminal domain 261 388 1.6E-41 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 Gene3D G3DSA:3.20.20.10 19 242 3.1E-77 T 13-10-2018 IPR029066 PLP-binding barrel Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 41 51 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 314 331 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 293 308 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 133 145 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 276 291 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 36 52 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 72 90 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 213 240 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 371 384 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1347 8e84dda535f46c74458d71c0f706dccc 390 PRINTS PR00992 Alanine racemase signature 167 178 1.7E-64 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 322 5.0E-35 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 275 289 5.0E-35 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 236 250 5.0E-35 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 348 359 5.0E-35 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 323 340 5.0E-35 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00097 Anthranilate synthase component II signature 306 317 4.5E-7 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00097 Anthranilate synthase component II signature 278 287 4.5E-7 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00097 Anthranilate synthase component II signature 391 404 4.5E-7 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 SUPERFAMILY SSF52317 233 418 1.36E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 4 131 7.5E-49 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00096 Glutamine amidotransferase superfamily signature 278 287 5.7E-12 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00096 Glutamine amidotransferase superfamily signature 391 404 5.7E-12 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 PRINTS PR00096 Glutamine amidotransferase superfamily signature 306 317 5.7E-12 T 13-10-2018 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 Gene3D G3DSA:3.40.50.880 199 418 1.8E-61 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 SUPERFAMILY SSF52021 4 142 1.11E-52 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 417 3.1E-125 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 SMART SM01097 3 133 1.4E-78 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 420 43.361 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 Pfam PF00117 Glutamine amidotransferase class-I 238 414 2.6E-40 T 13-10-2018 IPR017926 Glutamine amidotransferase Trebr_0247 65cdc284a6c5eff056bfe019ee768a7e 425 Gene3D G3DSA:3.50.30.20 2 150 7.6E-53 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_1588 de5e0db9cb41a23b34323fb3941f5227 386 SUPERFAMILY SSF56796 33 374 1.26E-74 T 13-10-2018 Trebr_1588 de5e0db9cb41a23b34323fb3941f5227 386 Gene3D G3DSA:1.20.1090.10 192 384 5.6E-52 T 13-10-2018 Trebr_1588 de5e0db9cb41a23b34323fb3941f5227 386 Gene3D G3DSA:3.40.50.1970 3 190 4.5E-42 T 13-10-2018 Trebr_1588 de5e0db9cb41a23b34323fb3941f5227 386 PIRSF PIRSF001455 29 384 6.5E-92 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Trebr_1588 de5e0db9cb41a23b34323fb3941f5227 386 Pfam PF01761 3-dehydroquinate synthase 87 354 4.5E-79 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 SUPERFAMILY SSF81296 138 234 3.95E-7 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 SMART SM00460 419 481 5.5E-16 T 13-10-2018 IPR002931 Transglutaminase-like Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 Pfam PF01841 Transglutaminase-like superfamily 376 479 3.8E-20 T 13-10-2018 IPR002931 Transglutaminase-like Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 SUPERFAMILY SSF54001 370 484 2.52E-26 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 Gene3D G3DSA:2.60.40.10 138 242 2.6E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 Gene3D G3DSA:2.60.40.10 40 121 1.3E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 Pfam PF01833 IPT/TIG domain 42 116 2.6E-9 T 13-10-2018 IPR002909 IPT domain Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 SUPERFAMILY SSF81296 41 115 3.5E-12 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_1465 ef7364d10bbdff02ef072054972e267e 563 Gene3D G3DSA:3.10.620.30 335 493 4.6E-21 T 13-10-2018 Trebr_0048 f4d6132ae95b251022e8b00b8af6025b 457 Gene3D G3DSA:3.40.50.1100 15 240 1.7E-158 T 13-10-2018 Trebr_0048 f4d6132ae95b251022e8b00b8af6025b 457 SUPERFAMILY SSF53686 41 426 1.65E-98 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Trebr_0048 f4d6132ae95b251022e8b00b8af6025b 457 Gene3D G3DSA:3.40.50.1100 14 422 1.7E-158 T 13-10-2018 Trebr_0048 f4d6132ae95b251022e8b00b8af6025b 457 PIRSF PIRSF001413 10 435 2.5E-111 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_0048 f4d6132ae95b251022e8b00b8af6025b 457 PIRSF PIRSF500824 2 438 2.6E-186 T 13-10-2018 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_0048 f4d6132ae95b251022e8b00b8af6025b 457 TIGRFAM TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme 14 431 8.2E-176 T 13-10-2018 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_0048 f4d6132ae95b251022e8b00b8af6025b 457 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 79 416 4.5E-44 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Gene3D G3DSA:2.60.420.10 745 804 2.4E-17 T 13-10-2018 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Gene3D G3DSA:3.40.50.1000 933 1060 1.0E-27 T 13-10-2018 IPR023214 HAD superfamily Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Pfam PF13419 Haloacid dehalogenase-like hydrolase 844 1033 3.5E-16 T 13-10-2018 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 SUPERFAMILY SSF48208 347 799 7.99E-114 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Gene3D G3DSA:2.70.98.40 2 161 2.8E-47 T 13-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Gene3D G3DSA:1.10.150.240 854 932 1.4E-28 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 763 827 1.2E-9 T 13-10-2018 IPR005194 Glycoside hydrolase family 65, C-terminal Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 TIGRFAM TIGR01990 bPGM: beta-phosphoglucomutase 841 1035 2.9E-67 T 13-10-2018 IPR010972 Beta-phosphoglucomutase GO:0000287|GO:0005975|GO:0008801 KEGG: 00500+5.4.2.6|MetaCyc: PWY-2721|MetaCyc: PWY-2722|MetaCyc: PWY-7459 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 SUPERFAMILY SSF74650 3 312 3.77E-43 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 10 312 1.3E-55 T 13-10-2018 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 842 1034 2.7E-53 T 13-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 SUPERFAMILY SSF56784 841 1046 1.2E-38 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 392 757 9.4E-108 T 13-10-2018 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 935 1034 5.6E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_0426 9cb3c243ec183a72fb0fba3358b9bd41 1060 Gene3D G3DSA:1.50.10.10 386 744 1.9E-120 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_1591 1611a5b90460ff15f8a31ec53d4c2a74 221 Pfam PF16258 Domain of unknown function (DUF4912) 77 184 6.8E-20 T 13-10-2018 IPR032585 Protein of unknown function DUF4912 Trebr_1428 93d0d5621ccc9516b92852d727282d07 442 Pfam PF00772 DnaB-like helicase N terminal domain 11 111 1.2E-30 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Trebr_1428 93d0d5621ccc9516b92852d727282d07 442 Pfam PF03796 DnaB-like helicase C terminal domain 186 439 4.2E-90 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Trebr_1428 93d0d5621ccc9516b92852d727282d07 442 Gene3D G3DSA:1.10.860.10 4 167 3.3E-53 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Trebr_1428 93d0d5621ccc9516b92852d727282d07 442 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 11 441 1.6E-142 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Trebr_1428 93d0d5621ccc9516b92852d727282d07 442 SUPERFAMILY SSF52540 185 431 2.8E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1428 93d0d5621ccc9516b92852d727282d07 442 SMART SM00382 203 397 1.7E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1428 93d0d5621ccc9516b92852d727282d07 442 Gene3D G3DSA:3.40.50.300 169 442 1.8E-90 T 13-10-2018 Trebr_1428 93d0d5621ccc9516b92852d727282d07 442 SUPERFAMILY SSF48024 9 121 1.83E-33 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 Trebr_1605 23a0db8e1c0f8175f81fae3452499208 463 SUPERFAMILY SSF117143 92 423 2.62E-70 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Trebr_1605 23a0db8e1c0f8175f81fae3452499208 463 Gene3D G3DSA:2.60.98.20 168 344 9.0E-10 T 13-10-2018 IPR037058 Flagellar hook protein FlgE superfamily Trebr_1605 23a0db8e1c0f8175f81fae3452499208 463 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 444 3.8E-88 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Trebr_1605 23a0db8e1c0f8175f81fae3452499208 463 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 384 461 9.1E-21 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Trebr_1605 23a0db8e1c0f8175f81fae3452499208 463 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Trebr_1605 23a0db8e1c0f8175f81fae3452499208 463 Pfam PF07559 Flagellar basal body protein FlaE 198 343 2.4E-17 T 13-10-2018 IPR011491 Flagellar hook protein FlgE Trebr_1605 23a0db8e1c0f8175f81fae3452499208 463 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 442 1.2E-53 T 13-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 Trebr_1605 23a0db8e1c0f8175f81fae3452499208 463 Pfam PF00460 Flagella basal body rod protein 5 35 2.7E-13 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Trebr_0488 6201d9fbcf8de6536062cb6a70ae655e 203 ProDom PD058023 TRANSMEMBRANE SO1069 MEMBRANE VCA0743 SO4196 VVA0623 VPA0666 HI1736 PM0424 3 65 4.0E-4 T 13-10-2018 IPR020137 Uncharacterised protein family HI1736 Trebr_0488 6201d9fbcf8de6536062cb6a70ae655e 203 SUPERFAMILY SSF55729 63 194 2.34E-6 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 51 101 2.0E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 Pfam PF01084 Ribosomal protein S18 48 98 6.1E-25 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 33 103 21.484 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 Gene3D G3DSA:4.10.640.10 21 103 6.6E-29 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 TIGRFAM TIGR00165 S18: ribosomal protein bS18 36 103 2.0E-32 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 PRINTS PR00974 Ribosomal protein S18 family signature 90 100 8.5E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 PRINTS PR00974 Ribosomal protein S18 family signature 58 68 8.5E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 PRINTS PR00974 Ribosomal protein S18 family signature 68 75 8.5E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 PRINTS PR00974 Ribosomal protein S18 family signature 76 90 8.5E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1430 31d0c9c94c18831852279a5a442ed39d 103 SUPERFAMILY SSF46911 32 102 5.62E-26 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 SMART SM00841 129 184 3.4E-23 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 121 6.4E-18 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 SMART SM01185 67 121 3.7E-18 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 TIGRFAM TIGR00038 efp: translation elongation factor P 4 185 1.8E-66 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 Hamap MF_00141 Elongation factor P [efp]. 1 185 43.929 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 60 1.0E-17 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 Pfam PF09285 Elongation factor P, C-terminal 131 184 2.9E-21 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 SUPERFAMILY SSF50249 130 185 7.71E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 Gene3D G3DSA:2.30.30.30 1 63 6.7E-19 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 PIRSF PIRSF005901 1 186 2.8E-64 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 SUPERFAMILY SSF50104 1 62 7.02E-16 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 SUPERFAMILY SSF50249 65 126 2.67E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 Gene3D G3DSA:2.40.50.140 128 187 5.1E-22 T 13-10-2018 Trebr_0767 d3d5b4717ba857747505f3d335b8c9e7 187 Gene3D G3DSA:2.40.50.140 64 127 1.0E-19 T 13-10-2018 Trebr_1643 2b125c34ec30eca45197c537ffea9e7a 291 Pfam PF03102 NeuB family 25 268 2.9E-68 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 Trebr_1643 2b125c34ec30eca45197c537ffea9e7a 291 Gene3D G3DSA:3.20.20.70 1 290 7.2E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1643 2b125c34ec30eca45197c537ffea9e7a 291 SUPERFAMILY SSF51569 2 288 2.69E-67 T 13-10-2018 Trebr_1458 484b809e59a4c225e613a5b2b6624a5a 147 Pfam PF02643 Uncharacterized ACR, COG1430 43 144 9.1E-30 T 13-10-2018 IPR003795 Protein of unknown function DUF192 Trebr_1458 484b809e59a4c225e613a5b2b6624a5a 147 Gene3D G3DSA:2.60.120.1140 22 146 3.9E-37 T 13-10-2018 IPR038695 Saro_0823-like superfamily Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 Gene3D G3DSA:1.10.287.950 332 642 3.4E-47 T 13-10-2018 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 Gene3D G3DSA:1.20.1480.50 219 316 1.6E-7 T 13-10-2018 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 SMART SM00304 256 310 1.5E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 SMART SM00283 353 600 7.2E-59 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 451 478 3.9E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 480 509 3.9E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 374 403 3.9E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 528 557 3.9E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 SUPERFAMILY SSF58104 278 598 5.1E-47 T 13-10-2018 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 Pfam PF00672 HAMP domain 257 305 8.9E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 SMART SM01049 68 161 5.4E-17 T 13-10-2018 IPR033480 Single Cache domain 2 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 Pfam PF08269 Cache domain 68 219 1.1E-24 T 13-10-2018 IPR004010 Double Cache domain 2 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 Gene3D G3DSA:3.30.450.20 65 213 1.8E-29 T 13-10-2018 Trebr_0335 9b368866559fa3ad7242d81fc640568e 643 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 420 571 5.4E-26 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0878 0fc3a411cb8676321c60e63af563c2eb 252 Gene3D G3DSA:3.40.50.300 13 252 1.8E-65 T 13-10-2018 Trebr_0878 0fc3a411cb8676321c60e63af563c2eb 252 SUPERFAMILY SSF52540 13 247 9.13E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0878 0fc3a411cb8676321c60e63af563c2eb 252 SMART SM00382 39 232 6.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0878 0fc3a411cb8676321c60e63af563c2eb 252 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 15 252 1.2E-108 T 13-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 Trebr_0878 0fc3a411cb8676321c60e63af563c2eb 252 Pfam PF00005 ABC transporter 31 177 5.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1905 209ef6f029f4ac062319479736e71adf 199 SMART SM00448 5 121 2.4E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1905 209ef6f029f4ac062319479736e71adf 199 SUPERFAMILY SSF52172 5 135 6.83E-30 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1905 209ef6f029f4ac062319479736e71adf 199 Pfam PF00072 Response regulator receiver domain 7 121 1.3E-17 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1905 209ef6f029f4ac062319479736e71adf 199 Gene3D G3DSA:3.40.50.12740 4 184 1.3E-29 T 13-10-2018 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 SUPERFAMILY SSF51735 2 186 8.62E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 155 171 - T 13-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 150 3.7E-28 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 SMART SM00859 3 152 1.9E-36 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 SUPERFAMILY SSF55347 160 324 2.83E-51 T 13-10-2018 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 350 40.589 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 Gene3D G3DSA:3.40.50.720 4 342 2.0E-126 T 13-10-2018 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 169 327 2.9E-18 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 353 3.5E-120 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Trebr_1861 3fbfb1ea59b180acaa8dcf8fd8333b35 356 Gene3D G3DSA:3.30.360.10 158 324 2.0E-126 T 13-10-2018 Trebr_2369 686af15574eae5105c185f0e138dd924 150 ProSitePatterns PS00893 Nudix box signature. 47 68 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Trebr_2369 686af15574eae5105c185f0e138dd924 150 PRINTS PR00502 NUDIX hydrolase family signature 56 71 8.3E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Trebr_2369 686af15574eae5105c185f0e138dd924 150 PRINTS PR00502 NUDIX hydrolase family signature 42 56 8.3E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Trebr_2369 686af15574eae5105c185f0e138dd924 150 Gene3D G3DSA:3.90.79.10 7 143 2.8E-34 T 13-10-2018 Trebr_2369 686af15574eae5105c185f0e138dd924 150 Pfam PF00293 NUDIX domain 11 135 1.1E-18 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Trebr_2369 686af15574eae5105c185f0e138dd924 150 SUPERFAMILY SSF55811 2 135 3.11E-35 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Trebr_2326 9aa4039ea86165f07ee8fabba3c984fd 635 SUPERFAMILY SSF56801 4 552 3.01E-106 T 13-10-2018 Trebr_2326 9aa4039ea86165f07ee8fabba3c984fd 635 Pfam PF00501 AMP-binding enzyme 10 504 7.6E-97 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Trebr_2326 9aa4039ea86165f07ee8fabba3c984fd 635 Gene3D G3DSA:3.40.50.12780 1 337 6.9E-47 T 13-10-2018 Trebr_2326 9aa4039ea86165f07ee8fabba3c984fd 635 Gene3D G3DSA:3.40.50.12780 358 499 1.2E-36 T 13-10-2018 Trebr_2326 9aa4039ea86165f07ee8fabba3c984fd 635 ProSitePatterns PS00455 Putative AMP-binding domain signature. 190 201 - T 13-10-2018 IPR020845 AMP-binding, conserved site Trebr_2058 2b7e987f308d69d1cfce894b5a3da26f 395 Gene3D G3DSA:3.40.50.2000 1 209 2.8E-8 T 13-10-2018 Trebr_2058 2b7e987f308d69d1cfce894b5a3da26f 395 Pfam PF13692 Glycosyl transferases group 1 220 358 7.4E-25 T 13-10-2018 Trebr_2058 2b7e987f308d69d1cfce894b5a3da26f 395 SUPERFAMILY SSF53756 2 389 6.09E-32 T 13-10-2018 Trebr_2058 2b7e987f308d69d1cfce894b5a3da26f 395 Gene3D G3DSA:3.40.50.2000 210 379 5.6E-19 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 Gene3D G3DSA:3.50.50.60 153 275 2.3E-98 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 SUPERFAMILY SSF51905 1 328 3.63E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 SUPERFAMILY SSF55424 342 456 5.15E-32 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 8.2E-32 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 8.2E-32 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 8.2E-32 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 8.2E-32 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 8.2E-32 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 315 3.8E-62 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 429 449 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 2.7E-52 T 13-10-2018 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 Gene3D G3DSA:3.50.50.60 4 329 2.3E-98 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 PIRSF PIRSF000350 1 457 7.9E-94 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 Gene3D G3DSA:3.30.390.30 345 458 4.7E-33 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Trebr_0387 426c38c796d2ceeaac6cbadc890ff25f 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 452 8.8E-27 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 SUPERFAMILY SSF51735 2 167 1.05E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2 103 3.2E-39 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 313 1.8E-68 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 SMART SM00846 2 151 6.4E-97 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 PIRSF PIRSF000149 1 332 4.1E-135 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 Gene3D G3DSA:3.40.50.720 3 326 1.1E-153 T 13-10-2018 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 1.0E-44 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 1.0E-44 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 1.0E-44 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 1.0E-44 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 1.0E-44 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 324 1.1E-136 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 SUPERFAMILY SSF55347 150 313 1.22E-75 T 13-10-2018 Trebr_0619 9c77a7f682129de5edf02847a3527a59 332 Gene3D G3DSA:3.30.360.10 150 315 1.1E-153 T 13-10-2018 Trebr_1406 51dd26116791287349da44f4ad6dc3f8 417 Pfam PF06969 HemN C-terminal domain 340 386 1.4E-6 T 13-10-2018 IPR010723 HemN, C-terminal Trebr_1406 51dd26116791287349da44f4ad6dc3f8 417 Pfam PF04055 Radical SAM superfamily 11 175 1.7E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_1406 51dd26116791287349da44f4ad6dc3f8 417 SUPERFAMILY SSF102114 5 416 8.11E-82 T 13-10-2018 Trebr_1406 51dd26116791287349da44f4ad6dc3f8 417 SMART SM00729 5 229 7.2E-29 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_1406 51dd26116791287349da44f4ad6dc3f8 417 Gene3D G3DSA:3.80.30.20 1 297 2.9E-78 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 20 354 1.2E-147 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 SUPERFAMILY SSF48029 135 346 4.84E-71 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 Gene3D G3DSA:1.10.220.30 216 355 4.9E-53 T 13-10-2018 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 Pfam PF14842 FliG N-terminal domain 25 128 1.4E-35 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 135 158 2.9E-85 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 216 241 2.9E-85 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 55 81 2.9E-85 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 293 319 2.9E-85 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 269 289 2.9E-85 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 247 267 2.9E-85 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 PRINTS PR00954 Flagellar motor switch protein FliG signature 26 42 2.9E-85 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 SUPERFAMILY SSF48029 24 134 1.86E-22 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 Gene3D G3DSA:1.10.220.30 19 107 2.7E-21 T 13-10-2018 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 PIRSF PIRSF003161 20 355 9.8E-124 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 Gene3D G3DSA:1.10.220.30 124 215 1.4E-33 T 13-10-2018 Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 Pfam PF14841 FliG middle domain 136 210 1.1E-30 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain Trebr_0965 fd68930bcd02d3847dce574431efc27c 355 Pfam PF01706 FliG C-terminal domain 238 345 1.4E-45 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal Trebr_0530 666324bba1c57a8f52bf022b5cb2b893 403 Gene3D G3DSA:3.30.565.10 260 391 1.5E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0530 666324bba1c57a8f52bf022b5cb2b893 403 SUPERFAMILY SSF55874 291 391 7.53E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0530 666324bba1c57a8f52bf022b5cb2b893 403 SMART SM00387 292 393 0.0013 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 9.2E-87 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 2.1E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 66 79 2.1E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 2.1E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 2.1E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 Gene3D G3DSA:3.90.230.10 1 248 2.1E-90 T 13-10-2018 Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 Hamap MF_01974 Methionine aminopeptidase [map]. 2 248 36.69 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 SUPERFAMILY SSF55920 1 247 1.03E-77 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like Trebr_1692 a18f81d362a1e1c19ccaf792b1ea7ab0 249 Pfam PF00557 Metallopeptidase family M24 12 237 6.4E-51 T 13-10-2018 IPR000994 Peptidase M24 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 SUPERFAMILY SSF54534 213 342 2.95E-38 T 13-10-2018 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 Gene3D G3DSA:3.10.50.40 200 342 8.4E-42 T 13-10-2018 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 80 97 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 Gene3D G3DSA:2.40.100.10 35 184 1.6E-61 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 252 339 1.1E-24 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 SUPERFAMILY SSF50891 38 180 6.28E-57 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 38 182 6.1E-47 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 66 3.5E-32 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 97 3.5E-32 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 152 3.5E-32 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 168 3.5E-32 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Trebr_0011 dbe90956a0c9229d05934e830d6d72e7 342 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 140 3.5E-32 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Trebr_0166 42c8702740d77624a3267b3c5b58a3cf 436 Gene3D G3DSA:1.20.1250.20 11 200 6.1E-17 T 13-10-2018 Trebr_0166 42c8702740d77624a3267b3c5b58a3cf 436 SUPERFAMILY SSF103473 18 420 3.92E-42 T 13-10-2018 IPR036259 MFS transporter superfamily Trebr_0166 42c8702740d77624a3267b3c5b58a3cf 436 Pfam PF07690 Major Facilitator Superfamily 26 368 3.3E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Trebr_0166 42c8702740d77624a3267b3c5b58a3cf 436 Gene3D G3DSA:1.20.1250.20 239 425 6.6E-24 T 13-10-2018 Trebr_2422 5cbd37e74a50d918a5212a3d2ac42918 166 SUPERFAMILY SSF103642 145 165 4.58E-8 T 13-10-2018 Trebr_2422 5cbd37e74a50d918a5212a3d2ac42918 166 SUPERFAMILY SSF54427 28 133 9.57E-27 T 13-10-2018 IPR032710 NTF2-like domain superfamily Trebr_2422 5cbd37e74a50d918a5212a3d2ac42918 166 Pfam PF02810 SEC-C motif 8 22 2.2E-6 T 13-10-2018 IPR004027 SEC-C motif Trebr_2422 5cbd37e74a50d918a5212a3d2ac42918 166 Pfam PF02810 SEC-C motif 148 166 1.7E-10 T 13-10-2018 IPR004027 SEC-C motif Trebr_2422 5cbd37e74a50d918a5212a3d2ac42918 166 Gene3D G3DSA:3.10.450.50 1 166 1.2E-46 T 13-10-2018 Trebr_1101 5acc6dae450579425a4203bd9f13344a 103 SUPERFAMILY SSF141000 7 98 2.22E-13 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 Trebr_1101 5acc6dae450579425a4203bd9f13344a 103 Gene3D G3DSA:1.10.20.60 5 98 2.5E-8 T 13-10-2018 Trebr_1101 5acc6dae450579425a4203bd9f13344a 103 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 29 95 1.6E-5 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Trebr_1101 5acc6dae450579425a4203bd9f13344a 103 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 8 99 9.6E-14 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Trebr_0529 d032d0c38bd2bb08ce122a3036f91e5f 577 SUPERFAMILY SSF51556 71 317 1.64E-37 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_0529 d032d0c38bd2bb08ce122a3036f91e5f 577 SUPERFAMILY SSF51338 19 352 4.57E-18 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Trebr_0529 d032d0c38bd2bb08ce122a3036f91e5f 577 Hamap MF_01518 Adenine deaminase [ade]. 21 572 36.106 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Trebr_0529 d032d0c38bd2bb08ce122a3036f91e5f 577 Pfam PF13382 Adenine deaminase C-terminal domain 399 569 8.7E-58 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Trebr_0529 d032d0c38bd2bb08ce122a3036f91e5f 577 Gene3D G3DSA:2.30.40.10 13 349 1.8E-119 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Trebr_0529 d032d0c38bd2bb08ce122a3036f91e5f 577 TIGRFAM TIGR01178 ade: adenine deaminase 21 571 1.3E-174 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Trebr_0529 d032d0c38bd2bb08ce122a3036f91e5f 577 Pfam PF01979 Amidohydrolase family 69 347 2.0E-25 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Trebr_0529 d032d0c38bd2bb08ce122a3036f91e5f 577 Gene3D G3DSA:3.20.20.140 71 312 1.8E-119 T 13-10-2018 Trebr_0771 c272606ce8aa3cabc81524c4b2648cc4 282 SUPERFAMILY SSF55073 124 275 1.57E-47 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0771 c272606ce8aa3cabc81524c4b2648cc4 282 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 116 275 1.7E-50 T 13-10-2018 IPR000160 GGDEF domain Trebr_0771 c272606ce8aa3cabc81524c4b2648cc4 282 Gene3D G3DSA:3.30.70.270 113 280 4.3E-55 T 13-10-2018 Trebr_0771 c272606ce8aa3cabc81524c4b2648cc4 282 Pfam PF00990 Diguanylate cyclase, GGDEF domain 119 273 2.8E-45 T 13-10-2018 IPR000160 GGDEF domain Trebr_0771 c272606ce8aa3cabc81524c4b2648cc4 282 SMART SM00267 108 277 6.8E-59 T 13-10-2018 IPR000160 GGDEF domain Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 Gene3D G3DSA:3.40.50.720 1 152 2.5E-41 T 13-10-2018 Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 Hamap MF_00042 Ribonuclease H [rnhA]. 384 533 30.715 T 13-10-2018 IPR022892 Ribonuclease HI GO:0004523 Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 SUPERFAMILY SSF55347 128 318 5.4E-29 T 13-10-2018 Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 Gene3D G3DSA:3.30.420.10 383 533 3.0E-53 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 Pfam PF00075 RNase H 385 527 4.6E-44 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 SUPERFAMILY SSF53098 386 529 4.68E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 Gene3D G3DSA:3.30.360.10 153 359 9.0E-38 T 13-10-2018 Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 118 1.1E-24 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Trebr_0754 e8bfad34bd6262fbf72a2674cbe74c4c 533 SUPERFAMILY SSF51735 3 158 3.12E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.3E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.3E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.3E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 3.9E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 SUPERFAMILY SSF53850 91 286 3.41E-23 T 13-10-2018 Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 Pfam PF03466 LysR substrate binding domain 92 286 3.1E-23 T 13-10-2018 IPR005119 LysR, substrate-binding Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 SUPERFAMILY SSF46785 6 77 4.39E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 Gene3D G3DSA:1.10.10.10 1 68 1.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 Gene3D G3DSA:3.40.190.10 160 254 1.7E-21 T 13-10-2018 Trebr_2547 1b87075c1e5c251b87eba22691f699d1 288 Gene3D G3DSA:3.40.190.10 92 159 1.7E-21 T 13-10-2018 Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 SUPERFAMILY SSF53335 107 366 3.28E-54 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 Gene3D G3DSA:3.40.50.150 111 382 5.5E-59 T 13-10-2018 Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 323 341 3.0E-22 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 163 183 3.0E-22 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 304 321 3.0E-22 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 130 144 3.0E-22 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 346 366 3.0E-22 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 135 140 - T 13-10-2018 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 Trebr_0084 990113720ca25961af85a6e01ca8a8d0 399 Pfam PF01555 DNA methylase 131 362 1.8E-44 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 SUPERFAMILY SSF64518 1 286 9.94E-87 T 13-10-2018 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 Pfam PF00700 Bacterial flagellin C-terminal helical region 201 285 5.4E-29 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 Gene3D G3DSA:1.20.58.1830 3 31 8.4E-56 T 13-10-2018 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 2.2E-38 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 Gene3D G3DSA:1.20.1330.10 43 180 8.4E-56 T 13-10-2018 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 PRINTS PR00207 Flagellin signature 74 93 5.2E-23 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 PRINTS PR00207 Flagellin signature 35 52 5.2E-23 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 PRINTS PR00207 Flagellin signature 109 132 5.2E-23 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 Gene3D G3DSA:1.10.8.410 232 286 1.6E-28 T 13-10-2018 Trebr_2413 aa5c28fb94fafcba94345e9ab6cec540 286 Gene3D G3DSA:1.20.1330.10 188 229 1.1E-9 T 13-10-2018 Trebr_0987 bdbf7e852fc6d9fdc5285c245d4d98c4 300 SUPERFAMILY SSF48452 215 286 3.04E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0987 bdbf7e852fc6d9fdc5285c245d4d98c4 300 Gene3D G3DSA:2.60.40.10 28 111 2.4E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0987 bdbf7e852fc6d9fdc5285c245d4d98c4 300 Gene3D G3DSA:1.25.40.10 203 294 3.0E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 Gene3D G3DSA:3.40.449.10 14 237 3.4E-264 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 PIRSF PIRSF001348 1 608 1.6E-290 T 13-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 14 234 9.8E-104 T 13-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 SUPERFAMILY SSF68923 5 237 2.82E-100 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 Gene3D G3DSA:3.90.228.20 238 602 3.4E-264 T 13-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 Gene3D G3DSA:2.170.8.10 49 398 3.4E-264 T 13-10-2018 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 262 270 - T 13-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 238 605 2.6E-169 T 13-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 2 606 49.156 T 13-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Trebr_2102 fb3948b0b780fb12e2f927c18d28afb9 608 SUPERFAMILY SSF53795 238 607 1.28E-150 T 13-10-2018 Trebr_2569 9dcf235602078b2f1e3c8f109a3ca463 366 SUPERFAMILY SSF48452 69 201 1.42E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2569 9dcf235602078b2f1e3c8f109a3ca463 366 Gene3D G3DSA:1.25.40.10 47 207 2.1E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0692 3b4f850808438e27dcd6fc05c4a860ac 246 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 71 236 1.2E-13 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Trebr_0692 3b4f850808438e27dcd6fc05c4a860ac 246 Gene3D G3DSA:3.30.420.40 65 215 1.2E-36 T 13-10-2018 Trebr_0692 3b4f850808438e27dcd6fc05c4a860ac 246 SUPERFAMILY SSF53067 68 239 1.19E-37 T 13-10-2018 Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 Gene3D G3DSA:3.20.20.80 148 598 3.4E-189 T 13-10-2018 Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 Gene3D G3DSA:2.60.40.1180 606 714 2.0E-22 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 SUPERFAMILY SSF51011 606 713 6.98E-18 T 13-10-2018 Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 SUPERFAMILY SSF51445 146 592 6.19E-132 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 9 710 3.1E-232 T 13-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 SUPERFAMILY SSF81296 8 159 1.6E-33 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 Pfam PF00128 Alpha amylase, catalytic domain 189 543 4.1E-16 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 13 105 9.3E-13 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 SMART SM00642 171 584 1.1E-10 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_2200 3bdae8d4b8fda2654bfeb21ff37643cb 714 Gene3D G3DSA:2.60.40.10 1 130 1.3E-38 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0223 3b31e2903280090b4b04116124332fdb 580 Pfam PF00664 ABC transporter transmembrane region 27 293 7.3E-42 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_0223 3b31e2903280090b4b04116124332fdb 580 SUPERFAMILY SSF90123 10 328 5.89E-71 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_0223 3b31e2903280090b4b04116124332fdb 580 SUPERFAMILY SSF52540 329 576 9.32E-92 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0223 3b31e2903280090b4b04116124332fdb 580 SMART SM00382 365 551 5.4E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0223 3b31e2903280090b4b04116124332fdb 580 Pfam PF00005 ABC transporter 356 505 9.7E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0223 3b31e2903280090b4b04116124332fdb 580 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0223 3b31e2903280090b4b04116124332fdb 580 Gene3D G3DSA:1.20.1560.10 1 326 1.2E-74 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_0223 3b31e2903280090b4b04116124332fdb 580 Gene3D G3DSA:3.40.50.300 333 578 2.8E-89 T 13-10-2018 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 251 551 1.8E-102 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 Pfam PF05524 PEP-utilising enzyme, N-terminal 5 125 1.6E-23 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 PIRSF PIRSF000732 1 566 1.0E-179 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 Pfam PF00391 PEP-utilising enzyme, mobile domain 151 224 2.0E-17 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 SUPERFAMILY SSF47831 29 142 3.4E-22 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 476 491 2.5E-17 T 13-10-2018 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 292 311 2.5E-17 T 13-10-2018 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 512 524 2.5E-17 T 13-10-2018 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 474 2.5E-17 T 13-10-2018 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 SUPERFAMILY SSF52009 124 241 1.44E-28 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 Gene3D G3DSA:3.50.30.10 6 232 1.6E-61 T 13-10-2018 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 Gene3D G3DSA:3.20.20.60 233 566 1.0E-110 T 13-10-2018 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 5 559 6.2E-140 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 Gene3D G3DSA:1.10.274.10 23 145 1.6E-61 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Trebr_2360 ec0a8f33a745b819dc47c91efb13455d 567 SUPERFAMILY SSF51621 250 553 5.5E-97 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Trebr_0682 5eeba97fd6042465271243f1b7d586e6 687 Pfam PF16561 Glycogen recognition site of AMP-activated protein kinase 42 116 5.1E-9 T 13-10-2018 IPR032640 AMP-activated protein kinase, glycogen-binding domain Reactome: R-HSA-1445148|Reactome: R-HSA-1632852|Reactome: R-HSA-2151209|Reactome: R-HSA-380972|Reactome: R-HSA-5628897|Reactome: R-HSA-6804756 Trebr_0682 5eeba97fd6042465271243f1b7d586e6 687 SUPERFAMILY SSF81296 34 115 1.8E-15 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_0682 5eeba97fd6042465271243f1b7d586e6 687 Gene3D G3DSA:2.60.40.10 31 117 7.7E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0396 48f116b90ab354ba0c3e42c4f1bccaf8 838 Gene3D G3DSA:1.20.1480.50 536 630 4.2E-7 T 13-10-2018 Trebr_0396 48f116b90ab354ba0c3e42c4f1bccaf8 838 SUPERFAMILY SSF158472 574 623 1.44E-6 T 13-10-2018 Trebr_0396 48f116b90ab354ba0c3e42c4f1bccaf8 838 SMART SM00471 651 788 1.6E-8 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_0396 48f116b90ab354ba0c3e42c4f1bccaf8 838 Gene3D G3DSA:1.10.3210.10 631 830 8.0E-65 T 13-10-2018 Trebr_0396 48f116b90ab354ba0c3e42c4f1bccaf8 838 SUPERFAMILY SSF109604 628 818 1.02E-34 T 13-10-2018 Trebr_0396 48f116b90ab354ba0c3e42c4f1bccaf8 838 SUPERFAMILY SSF63825 56 276 3.92E-7 T 13-10-2018 Trebr_0396 48f116b90ab354ba0c3e42c4f1bccaf8 838 SMART SM00304 572 624 0.0038 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0396 48f116b90ab354ba0c3e42c4f1bccaf8 838 Pfam PF01966 HD domain 656 778 5.7E-14 T 13-10-2018 IPR006674 HD domain Trebr_0355 112f60052ce64da0373a4d69d7e33e79 587 Pfam PF00149 Calcineurin-like phosphoesterase 211 348 1.3E-5 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Trebr_0355 112f60052ce64da0373a4d69d7e33e79 587 SUPERFAMILY SSF56300 209 579 4.28E-15 T 13-10-2018 Trebr_0169 2b7ab4969e93dfd6f470afb8f7463de7 289 Gene3D G3DSA:3.40.190.10 46 285 1.2E-75 T 13-10-2018 Trebr_0169 2b7ab4969e93dfd6f470afb8f7463de7 289 SUPERFAMILY SSF53850 44 288 1.43E-66 T 13-10-2018 Trebr_0169 2b7ab4969e93dfd6f470afb8f7463de7 289 Gene3D G3DSA:3.40.190.10 117 248 1.2E-75 T 13-10-2018 Trebr_0169 2b7ab4969e93dfd6f470afb8f7463de7 289 Pfam PF12849 PBP superfamily domain 33 274 8.7E-39 T 13-10-2018 IPR024370 PBP domain Trebr_0169 2b7ab4969e93dfd6f470afb8f7463de7 289 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 5 288 7.0E-64 T 13-10-2018 IPR011862 Phosphate binding protein GO:0042301 Trebr_1248 e9e8da0989696ed3b81f6e2f1944b6b2 241 SMART SM00382 28 212 2.7E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1248 e9e8da0989696ed3b81f6e2f1944b6b2 241 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1248 e9e8da0989696ed3b81f6e2f1944b6b2 241 SUPERFAMILY SSF52540 3 217 1.48E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1248 e9e8da0989696ed3b81f6e2f1944b6b2 241 Pfam PF00005 ABC transporter 19 161 5.2E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1248 e9e8da0989696ed3b81f6e2f1944b6b2 241 Gene3D G3DSA:3.40.50.300 1 235 6.0E-54 T 13-10-2018 Trebr_1612 6879831b9d6c3e81e36ac5bbcdb0c8d3 197 Pfam PF01351 Ribonuclease HII 7 195 2.3E-25 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain Trebr_1612 6879831b9d6c3e81e36ac5bbcdb0c8d3 197 Gene3D G3DSA:3.30.420.10 1 197 2.0E-59 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Trebr_1612 6879831b9d6c3e81e36ac5bbcdb0c8d3 197 SUPERFAMILY SSF53098 3 196 2.43E-54 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily Trebr_0658 d402f431c852ddbcd34d290efb4eaf95 333 SUPERFAMILY SSF53659 3 329 8.3E-95 T 13-10-2018 Trebr_0658 d402f431c852ddbcd34d290efb4eaf95 333 Gene3D G3DSA:3.40.718.10 1 329 5.2E-119 T 13-10-2018 Trebr_0658 d402f431c852ddbcd34d290efb4eaf95 333 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 322 4.3E-94 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 Trebr_0658 d402f431c852ddbcd34d290efb4eaf95 333 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 325 1.9E-95 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 Pfam PF01926 50S ribosome-binding GTPase 52 171 4.6E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 Pfam PF01926 50S ribosome-binding GTPase 229 347 8.7E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 Gene3D G3DSA:3.30.300.20 405 488 1.1E-22 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 405 485 1.3E-23 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 Gene3D G3DSA:3.40.50.300 44 223 1.0E-36 T 13-10-2018 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 SUPERFAMILY SSF52540 52 214 4.89E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 Hamap MF_00195 GTPase Der [der]. 49 488 32.611 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 230 250 2.0E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 279 294 2.0E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 50 485 1.7E-141 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 PIRSF PIRSF006485 48 493 9.8E-140 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 Gene3D G3DSA:3.40.50.300 224 401 1.3E-48 T 13-10-2018 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 SUPERFAMILY SSF52540 223 488 1.88E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 226 393 1.1E-30 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_2359 dbbb5c164805186f528288a521ea2e85 497 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 52 210 1.8E-20 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_1031 bdfb0e61c520b285e3fcee55536fbc66 611 SMART SM00382 389 590 8.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1031 bdfb0e61c520b285e3fcee55536fbc66 611 Gene3D G3DSA:1.20.1560.10 1 348 3.8E-38 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1031 bdfb0e61c520b285e3fcee55536fbc66 611 Pfam PF00005 ABC transporter 380 529 1.8E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1031 bdfb0e61c520b285e3fcee55536fbc66 611 SUPERFAMILY SSF90123 16 348 3.79E-44 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1031 bdfb0e61c520b285e3fcee55536fbc66 611 ProSitePatterns PS00211 ABC transporters family signature. 501 515 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1031 bdfb0e61c520b285e3fcee55536fbc66 611 Gene3D G3DSA:3.40.50.300 355 605 4.5E-78 T 13-10-2018 Trebr_1031 bdfb0e61c520b285e3fcee55536fbc66 611 Pfam PF00664 ABC transporter transmembrane region 33 280 4.1E-17 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_1031 bdfb0e61c520b285e3fcee55536fbc66 611 SUPERFAMILY SSF52540 357 597 5.0E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0966 d7627e8dea705e898aa453eeb1989a69 311 Pfam PF02108 Flagellar assembly protein FliH 161 287 1.2E-25 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE Trebr_0966 d7627e8dea705e898aa453eeb1989a69 311 Gene3D G3DSA:3.30.2320.30 185 296 3.9E-5 T 13-10-2018 IPR038495 V-type ATPase subunit E, C-terminal domain superfamily Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_0966 d7627e8dea705e898aa453eeb1989a69 311 SUPERFAMILY SSF160527 195 292 2.35E-6 T 13-10-2018 Trebr_1801 ce07e42df52693bff4e47bcee84ae9ec 380 Gene3D G3DSA:3.40.50.2000 193 333 2.5E-97 T 13-10-2018 Trebr_1801 ce07e42df52693bff4e47bcee84ae9ec 380 SUPERFAMILY SSF53756 8 378 5.83E-100 T 13-10-2018 Trebr_1801 ce07e42df52693bff4e47bcee84ae9ec 380 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 32 365 1.3E-82 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Trebr_1801 ce07e42df52693bff4e47bcee84ae9ec 380 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 9 366 1.2E-68 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 Trebr_1801 ce07e42df52693bff4e47bcee84ae9ec 380 Gene3D G3DSA:3.40.50.2000 11 192 2.5E-97 T 13-10-2018 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 Pfam PF13414 TPR repeat 15 49 6.7E-8 T 13-10-2018 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 SMART SM00028 107 140 0.0031 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 SMART SM00028 5 38 8.8E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 SMART SM00028 73 106 1.3 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 SMART SM00028 39 72 0.22 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 SUPERFAMILY SSF48452 3 170 1.04E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 Pfam PF14559 Tetratricopeptide repeat 122 167 8.3E-6 T 13-10-2018 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 Gene3D G3DSA:1.25.40.10 100 174 1.6E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0722 0a88adf9a6b8f68d7f5c2d8f61f6c6c0 178 Gene3D G3DSA:1.25.40.10 1 99 2.7E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0919 9efc24f031490686df59e50dbcf0a470 338 Pfam PF01966 HD domain 161 280 5.4E-16 T 13-10-2018 IPR006674 HD domain Trebr_0919 9efc24f031490686df59e50dbcf0a470 338 SUPERFAMILY SSF52172 6 183 6.69E-41 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0919 9efc24f031490686df59e50dbcf0a470 338 SMART SM00471 155 290 2.3E-8 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_0919 9efc24f031490686df59e50dbcf0a470 338 SUPERFAMILY SSF109604 146 319 5.42E-37 T 13-10-2018 Trebr_0919 9efc24f031490686df59e50dbcf0a470 338 SMART SM00448 6 120 7.0E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0919 9efc24f031490686df59e50dbcf0a470 338 Gene3D G3DSA:3.40.50.2300 6 141 1.4E-37 T 13-10-2018 Trebr_0919 9efc24f031490686df59e50dbcf0a470 338 Gene3D G3DSA:1.10.3210.10 142 331 1.7E-65 T 13-10-2018 Trebr_0919 9efc24f031490686df59e50dbcf0a470 338 Pfam PF00072 Response regulator receiver domain 8 121 3.2E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1564 9cec4b521f3e4c96cc6255abf17cebd8 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 288 1.6E-31 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Trebr_1564 9cec4b521f3e4c96cc6255abf17cebd8 328 SUPERFAMILY SSF51735 103 289 1.15E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1564 9cec4b521f3e4c96cc6255abf17cebd8 328 Gene3D G3DSA:3.40.50.720 99 287 4.7E-61 T 13-10-2018 Trebr_1564 9cec4b521f3e4c96cc6255abf17cebd8 328 Gene3D G3DSA:3.40.50.720 36 308 4.7E-61 T 13-10-2018 Trebr_1802 a5a4b3ae86be3e00511cee27aee4e449 293 SUPERFAMILY SSF51735 5 249 9.0E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1802 a5a4b3ae86be3e00511cee27aee4e449 293 Pfam PF04321 RmlD substrate binding domain 5 278 2.9E-19 T 13-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Trebr_1802 a5a4b3ae86be3e00511cee27aee4e449 293 Gene3D G3DSA:3.90.25.10 170 246 7.0E-42 T 13-10-2018 Trebr_1802 a5a4b3ae86be3e00511cee27aee4e449 293 Gene3D G3DSA:3.40.50.720 7 222 7.0E-42 T 13-10-2018 Trebr_1117 a77afa02107b4bd2fab43cf3e320b0a2 302 SUPERFAMILY SSF56281 1 295 2.03E-35 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_1117 a77afa02107b4bd2fab43cf3e320b0a2 302 Gene3D G3DSA:3.60.15.10 1 295 9.2E-69 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_1117 a77afa02107b4bd2fab43cf3e320b0a2 302 Pfam PF12706 Beta-lactamase superfamily domain 52 251 8.7E-30 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_1616 37b469b829273da6e7fb53b4a1e373bd 200 Pfam PF00156 Phosphoribosyl transferase domain 14 130 3.2E-11 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Trebr_1616 37b469b829273da6e7fb53b4a1e373bd 200 SUPERFAMILY SSF53271 3 183 3.73E-23 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like Trebr_1616 37b469b829273da6e7fb53b4a1e373bd 200 Gene3D G3DSA:3.40.50.2020 2 193 1.4E-29 T 13-10-2018 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 SUPERFAMILY SSF53920 46 326 1.31E-38 T 13-10-2018 IPR009016 Iron hydrogenase Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 Pfam PF13187 4Fe-4S dicluster domain 15 60 1.2E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 SUPERFAMILY SSF54862 9 72 8.03E-15 T 13-10-2018 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 Pfam PF04060 Putative Fe-S cluster 400 428 1.1E-7 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 515 677 1.7E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 SUPERFAMILY SSF58104 469 688 5.84E-45 T 13-10-2018 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 Gene3D G3DSA:3.40.50.1780 62 239 3.5E-31 T 13-10-2018 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 Gene3D G3DSA:1.10.287.950 412 690 2.3E-43 T 13-10-2018 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 SMART SM00283 449 690 2.1E-37 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 79 309 4.2E-26 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 16 27 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 Gene3D G3DSA:3.40.950.10 118 257 3.5E-31 T 13-10-2018 Trebr_0258 ecdfcd3be39e1c871a487cb217eccd38 690 Gene3D G3DSA:3.30.70.20 11 61 3.5E-31 T 13-10-2018 Trebr_2089 d75cb5821d931c74135353fb540317d6 118 Gene3D G3DSA:1.20.120.910 1 118 1.8E-29 T 13-10-2018 Trebr_2089 d75cb5821d931c74135353fb540317d6 118 SUPERFAMILY SSF109635 1 80 7.19E-8 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily Trebr_2089 d75cb5821d931c74135353fb540317d6 118 PRINTS PR00618 DksA/TraR zinc finger signature 97 109 1.4E-5 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Trebr_2089 d75cb5821d931c74135353fb540317d6 118 PRINTS PR00618 DksA/TraR zinc finger signature 85 96 1.4E-5 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Trebr_2089 d75cb5821d931c74135353fb540317d6 118 SUPERFAMILY SSF57716 82 117 2.99E-9 T 13-10-2018 Trebr_2089 d75cb5821d931c74135353fb540317d6 118 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 80 115 3.4E-13 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 Gene3D G3DSA:1.25.40.10 32 170 3.2E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 Gene3D G3DSA:1.25.40.10 171 245 5.8E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SMART SM00028 142 175 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SMART SM00028 74 107 15.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SMART SM00028 278 311 1.3 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SMART SM00028 176 209 20.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SMART SM00028 210 243 130.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SMART SM00028 108 141 3.4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SMART SM00028 40 73 1.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 Pfam PF14559 Tetratricopeptide repeat 120 174 6.7E-6 T 13-10-2018 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 Gene3D G3DSA:1.25.40.10 246 390 9.7E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SUPERFAMILY SSF48452 201 387 4.11E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 SUPERFAMILY SSF48452 40 214 2.28E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 Pfam PF13432 Tetratricopeptide repeat 45 103 3.1E-4 T 13-10-2018 Trebr_0986 6f936d1926f561fd21387d50382c7b8f 706 Pfam PF13432 Tetratricopeptide repeat 188 241 2.1E-6 T 13-10-2018 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SUPERFAMILY SSF48452 83 336 2.28E-32 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 Pfam PF14559 Tetratricopeptide repeat 78 142 3.0E-8 T 13-10-2018 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SUPERFAMILY SSF48452 296 449 1.66E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 Gene3D G3DSA:1.25.40.10 73 265 1.2E-28 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 203 236 140.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 271 304 16.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 305 338 0.0027 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 339 372 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 439 472 17.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 373 406 490.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 169 202 12.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 101 134 99.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 SMART SM00028 237 270 12.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 Gene3D G3DSA:1.25.40.10 266 488 5.6E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0311 cbc2c19a6db2be8e27e9af92291ba3bb 502 Pfam PF13432 Tetratricopeptide repeat 278 335 3.4E-4 T 13-10-2018 Trebr_0047 c7dafa5c66fe771081459752279254a1 161 SUPERFAMILY SSF50475 1 155 1.55E-44 T 13-10-2018 Trebr_0047 c7dafa5c66fe771081459752279254a1 161 Gene3D G3DSA:2.30.110.10 1 157 4.0E-42 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Trebr_0047 c7dafa5c66fe771081459752279254a1 161 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 12 153 1.1E-19 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 SUPERFAMILY SSF52402 186 414 7.28E-34 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 SUPERFAMILY SSF54810 396 545 3.01E-13 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 Pfam PF00958 GMP synthase C terminal domain 569 652 3.9E-12 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 Pfam PF00958 GMP synthase C terminal domain 474 545 2.1E-8 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 Gene3D G3DSA:3.30.300.10 397 548 1.4E-15 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 Gene3D G3DSA:3.40.50.620 196 396 1.2E-62 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 Gene3D G3DSA:3.30.300.10 549 653 3.1E-24 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 6 20 3.9E-5 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 3.9E-5 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 45 59 3.9E-5 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 1.2E-5 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 1.2E-5 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 PRINTS PR00096 Glutamine amidotransferase superfamily signature 48 57 1.2E-5 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 Pfam PF02540 NAD synthase 201 268 2.2E-6 T 13-10-2018 IPR022310 NAD/GMP synthase Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 Gene3D G3DSA:3.40.50.880 2 192 9.9E-44 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 Pfam PF00117 Glutamine amidotransferase class-I 7 185 3.6E-27 T 13-10-2018 IPR017926 Glutamine amidotransferase Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 6 191 3.5E-55 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 SUPERFAMILY SSF54810 550 653 3.14E-21 T 13-10-2018 Trebr_1074 143f18bed7f84eaeb51ed02ee2b508b9 653 SUPERFAMILY SSF52317 5 189 6.05E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2150 b14808e989c0d51d01502ec6cc42cf1c 237 SUPERFAMILY SSF52540 10 230 6.9E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2150 b14808e989c0d51d01502ec6cc42cf1c 237 Gene3D G3DSA:3.40.50.300 8 235 1.3E-68 T 13-10-2018 Trebr_2150 b14808e989c0d51d01502ec6cc42cf1c 237 Pfam PF00005 ABC transporter 29 177 4.0E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2150 b14808e989c0d51d01502ec6cc42cf1c 237 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_2150 b14808e989c0d51d01502ec6cc42cf1c 237 SMART SM00382 38 227 6.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1002 d3fc487818ba527fd188ad8234ddda23 238 SMART SM00448 3 113 3.6E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1002 d3fc487818ba527fd188ad8234ddda23 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 4.1E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_1002 d3fc487818ba527fd188ad8234ddda23 238 Gene3D G3DSA:1.10.10.10 131 233 4.5E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1002 d3fc487818ba527fd188ad8234ddda23 238 SUPERFAMILY SSF52172 2 124 8.68E-37 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1002 d3fc487818ba527fd188ad8234ddda23 238 Pfam PF00072 Response regulator receiver domain 5 113 4.5E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1002 d3fc487818ba527fd188ad8234ddda23 238 SMART SM00862 153 228 2.6E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_1002 d3fc487818ba527fd188ad8234ddda23 238 SUPERFAMILY SSF46894 129 229 1.76E-26 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_1002 d3fc487818ba527fd188ad8234ddda23 238 Gene3D G3DSA:3.40.50.2300 1 130 3.5E-34 T 13-10-2018 Trebr_1493 d026fd01d906b6583706ca17b6b57187 370 SUPERFAMILY SSF52738 151 340 1.31E-60 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal Trebr_1493 d026fd01d906b6583706ca17b6b57187 370 PIRSF PIRSF000876 1 345 4.5E-73 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Trebr_1493 d026fd01d906b6583706ca17b6b57187 370 Pfam PF01339 CheB methylesterase 156 336 1.4E-57 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Trebr_1493 d026fd01d906b6583706ca17b6b57187 370 Gene3D G3DSA:3.40.50.180 148 340 1.2E-64 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 PRINTS PR01243 Nucleoside diphosphate kinase signature 89 105 1.8E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 PRINTS PR01243 Nucleoside diphosphate kinase signature 112 131 1.8E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 PRINTS PR01243 Nucleoside diphosphate kinase signature 48 67 1.8E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 PRINTS PR01243 Nucleoside diphosphate kinase signature 4 26 1.8E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 PRINTS PR01243 Nucleoside diphosphate kinase signature 68 85 1.8E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 Pfam PF00334 Nucleoside diphosphate kinase 2 135 2.3E-50 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 Gene3D G3DSA:3.30.70.141 1 147 5.8E-56 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 1 136 32.688 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 SUPERFAMILY SSF54919 1 146 9.3E-54 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_1077 5e36b05b8cb8ac8f68e998b17edad939 147 SMART SM00562 1 138 1.2E-72 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 Gene3D G3DSA:3.40.50.80 101 233 3.7E-26 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 PIRSF PIRSF006816 6 273 1.0E-65 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 SUPERFAMILY SSF52343 97 268 1.28E-34 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 Pfam PF00175 Oxidoreductase NAD-binding domain 115 217 1.1E-15 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 237 268 3.3E-10 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 Gene3D G3DSA:2.40.30.10 9 100 1.3E-18 T 13-10-2018 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 SUPERFAMILY SSF63380 7 104 2.69E-22 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 Pfam PF00970 Oxidoreductase FAD-binding domain 12 100 5.5E-7 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 212 6.7E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 77 86 6.7E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 114 133 6.7E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 140 149 6.7E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 PRINTS PR00410 Phenol hydroxylase reductase family signature 114 133 1.6E-8 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 PRINTS PR00410 Phenol hydroxylase reductase family signature 204 212 1.6E-8 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Trebr_2030 6cc5d943dfc3694bed0acb8640485c06 275 PRINTS PR00410 Phenol hydroxylase reductase family signature 39 51 1.6E-8 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 SUPERFAMILY SSF52172 6 136 1.57E-27 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 SMART SM00448 6 120 5.0E-17 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 483 498 1.4E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 498 514 1.4E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 SMART SM00342 431 514 3.2E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 Gene3D G3DSA:1.10.10.60 416 468 6.5E-11 T 13-10-2018 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 Gene3D G3DSA:3.40.50.2300 2 145 9.3E-27 T 13-10-2018 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 SUPERFAMILY SSF46689 467 515 6.27E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 Pfam PF12833 Helix-turn-helix domain 438 515 6.7E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 468 510 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 Gene3D G3DSA:1.10.10.2730 469 518 5.8E-17 T 13-10-2018 Trebr_1228 e1a4ea3a504d0063f65cbfe44e0cc1e4 518 Pfam PF00072 Response regulator receiver domain 9 120 1.9E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2515 b7b80dd07458a476b1b3f61af2ff17c1 247 SUPERFAMILY SSF54862 4 64 1.13E-17 T 13-10-2018 Trebr_2515 b7b80dd07458a476b1b3f61af2ff17c1 247 Pfam PF12837 4Fe-4S binding domain 5 28 8.6E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2515 b7b80dd07458a476b1b3f61af2ff17c1 247 Pfam PF00037 4Fe-4S binding domain 41 59 1.3E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2515 b7b80dd07458a476b1b3f61af2ff17c1 247 Gene3D G3DSA:3.30.70.20 1 80 5.4E-13 T 13-10-2018 Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 SUPERFAMILY SSF46600 190 238 8.37E-12 T 13-10-2018 IPR036876 UVR domain superfamily Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 384 532 1.2E-48 T 13-10-2018 IPR001162 UvrC family homology region Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 16 576 8.1E-161 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 Hamap MF_00203 UvrABC system protein C [uvrC]. 8 601 26.462 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 Gene3D G3DSA:3.30.420.340 376 543 4.1E-52 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 Pfam PF02151 UvrB/uvrC motif 207 236 6.3E-8 T 13-10-2018 IPR001943 UVR domain GO:0005515 Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 Gene3D G3DSA:3.40.1440.10 7 105 1.1E-32 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 Gene3D G3DSA:4.10.860.10 202 245 5.3E-6 T 13-10-2018 Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 SUPERFAMILY SSF47781 494 600 1.11E-8 T 13-10-2018 IPR010994 RuvA domain 2-like Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 Pfam PF01541 GIY-YIG catalytic domain 22 96 1.4E-9 T 13-10-2018 IPR000305 GIY-YIG endonuclease Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 SMART SM00465 21 101 2.9E-22 T 13-10-2018 IPR000305 GIY-YIG endonuclease Trebr_1963 96ffefe40612b5ffac2687705ca41f4a 675 SUPERFAMILY SSF82771 21 103 1.27E-21 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Trebr_0934 633b2e34656f6cd716c9e4d93d1295dd 411 SUPERFAMILY SSF109604 199 397 1.88E-31 T 13-10-2018 Trebr_0934 633b2e34656f6cd716c9e4d93d1295dd 411 SMART SM00471 203 367 2.9E-10 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_0934 633b2e34656f6cd716c9e4d93d1295dd 411 SUPERFAMILY SSF55781 7 194 9.16E-25 T 13-10-2018 Trebr_0934 633b2e34656f6cd716c9e4d93d1295dd 411 Gene3D G3DSA:3.30.450.40 15 183 1.3E-29 T 13-10-2018 IPR029016 GAF-like domain superfamily Trebr_0934 633b2e34656f6cd716c9e4d93d1295dd 411 Pfam PF01590 GAF domain 25 182 1.4E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 Trebr_0934 633b2e34656f6cd716c9e4d93d1295dd 411 Gene3D G3DSA:1.10.3210.10 184 411 1.8E-69 T 13-10-2018 Trebr_0934 633b2e34656f6cd716c9e4d93d1295dd 411 Pfam PF01966 HD domain 209 357 1.4E-21 T 13-10-2018 IPR006674 HD domain Trebr_0934 633b2e34656f6cd716c9e4d93d1295dd 411 SMART SM00065 25 192 2.8E-8 T 13-10-2018 IPR003018 GAF domain GO:0005515 Trebr_0573 2dfaef2ae535591402adbab39727662e 275 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 243 7.2E-21 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_1068 cf65f25daf5a5b847ac05cc2b0e0e6dc 542 Gene3D G3DSA:3.40.50.2000 196 354 9.5E-22 T 13-10-2018 Trebr_1068 cf65f25daf5a5b847ac05cc2b0e0e6dc 542 Gene3D G3DSA:3.40.50.2000 1 195 7.4E-11 T 13-10-2018 Trebr_1068 cf65f25daf5a5b847ac05cc2b0e0e6dc 542 Pfam PF13692 Glycosyl transferases group 1 194 323 1.4E-14 T 13-10-2018 Trebr_1068 cf65f25daf5a5b847ac05cc2b0e0e6dc 542 Pfam PF08323 Starch synthase catalytic domain 2 105 5.0E-6 T 13-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Trebr_1068 cf65f25daf5a5b847ac05cc2b0e0e6dc 542 SUPERFAMILY SSF53756 1 358 1.61E-45 T 13-10-2018 Trebr_1661 fda3b56f832fe3f533b05c6100f22f0c 318 Gene3D G3DSA:3.40.50.300 69 249 1.2E-40 T 13-10-2018 Trebr_1661 fda3b56f832fe3f533b05c6100f22f0c 318 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 44 307 2.3E-53 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Trebr_1661 fda3b56f832fe3f533b05c6100f22f0c 318 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 1 315 29.651 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Trebr_1661 fda3b56f832fe3f533b05c6100f22f0c 318 Gene3D G3DSA:1.10.40.50 250 317 4.0E-16 T 13-10-2018 Trebr_1661 fda3b56f832fe3f533b05c6100f22f0c 318 SUPERFAMILY SSF50249 1 69 4.86E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1661 fda3b56f832fe3f533b05c6100f22f0c 318 Pfam PF03193 RsgA GTPase 66 248 5.9E-44 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 Trebr_1661 fda3b56f832fe3f533b05c6100f22f0c 318 SUPERFAMILY SSF52540 83 308 8.73E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2178 e51c13542fd74d779458fc0c3ca21ed3 227 TIGRFAM TIGR01876 cas_Cas5d: CRISPR-associated protein Cas5, subtype I-C/DVULG 9 207 4.3E-80 T 13-10-2018 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d GO:0004519|GO:0051607 Trebr_2178 e51c13542fd74d779458fc0c3ca21ed3 227 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 5 199 8.4E-43 T 13-10-2018 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 Trebr_2178 e51c13542fd74d779458fc0c3ca21ed3 227 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 9 48 2.0E-10 T 13-10-2018 IPR013422 CRISPR-associated protein Cas5, N-terminal Trebr_2178 e51c13542fd74d779458fc0c3ca21ed3 227 PIRSF PIRSF029950 1 217 9.8E-68 T 13-10-2018 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d GO:0004519|GO:0051607 Trebr_2178 e51c13542fd74d779458fc0c3ca21ed3 227 Gene3D G3DSA:3.30.70.2660 1 220 7.3E-91 T 13-10-2018 Trebr_0139 0769af3f40c29901247cc99186bdf4f7 398 SUPERFAMILY SSF118215 8 379 1.57E-66 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Trebr_0139 0769af3f40c29901247cc99186bdf4f7 398 Gene3D G3DSA:1.10.3860.10 2 385 8.4E-40 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Trebr_0139 0769af3f40c29901247cc99186bdf4f7 398 Pfam PF00375 Sodium:dicarboxylate symporter family 9 379 5.9E-70 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 SUPERFAMILY SSF56784 358 685 1.75E-55 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 584 603 5.0E-22 T 13-10-2018 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 608 620 5.0E-22 T 13-10-2018 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 524 534 5.0E-22 T 13-10-2018 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 359 373 5.0E-22 T 13-10-2018 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 207 221 5.0E-22 T 13-10-2018 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 129 397 3.7E-34 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 484 664 4.5E-30 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 Gene3D G3DSA:3.40.50.1000 340 637 1.6E-77 T 13-10-2018 IPR023214 HAD superfamily Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 Pfam PF00702 haloacid dehalogenase-like hydrolase 357 598 1.3E-29 T 13-10-2018 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 SUPERFAMILY SSF81653 160 257 9.29E-22 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 Gene3D G3DSA:3.40.1110.10 370 508 1.6E-77 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 361 367 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 Pfam PF00122 E1-E2 ATPase 157 339 9.6E-43 T 13-10-2018 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 Gene3D G3DSA:2.70.150.20 150 261 4.6E-29 T 13-10-2018 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 SUPERFAMILY SSF81665 108 683 8.5E-16 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Trebr_2069 2963133c5047ba3081652ca018c04bb4 693 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 108 687 2.6E-165 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Trebr_0910 ccafd0502a7f1095c021f12835cdbd66 136 Pfam PF02021 Uncharacterised protein family UPF0102 26 117 3.9E-24 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 Trebr_0910 ccafd0502a7f1095c021f12835cdbd66 136 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 19 121 1.8E-23 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 Trebr_0910 ccafd0502a7f1095c021f12835cdbd66 136 SUPERFAMILY SSF52980 21 131 3.86E-20 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Trebr_0910 ccafd0502a7f1095c021f12835cdbd66 136 Gene3D G3DSA:3.40.1350.10 25 135 2.4E-31 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 Trebr_0910 ccafd0502a7f1095c021f12835cdbd66 136 Hamap MF_00048 UPF0102 protein YraN [yraN]. 19 130 20.679 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 Trebr_1097 ac22def80e81c5b96744a4132e0e9f37 405 SMART SM00636 33 389 3.1E-88 T 13-10-2018 IPR011583 Chitinase II GO:0008061 Trebr_1097 ac22def80e81c5b96744a4132e0e9f37 405 ProSitePatterns PS01095 Chitinases family 18 active site. 157 165 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 Trebr_1097 ac22def80e81c5b96744a4132e0e9f37 405 SUPERFAMILY SSF54556 295 360 5.07E-12 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily Trebr_1097 ac22def80e81c5b96744a4132e0e9f37 405 Gene3D G3DSA:3.10.50.10 298 360 3.5E-14 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily Trebr_1097 ac22def80e81c5b96744a4132e0e9f37 405 Pfam PF00704 Glycosyl hydrolases family 18 54 389 1.7E-78 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 Trebr_1097 ac22def80e81c5b96744a4132e0e9f37 405 SUPERFAMILY SSF51445 32 392 5.99E-77 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 SMART SM00889 476 593 1.7E-61 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Gene3D G3DSA:3.30.70.870 402 479 1.2E-28 T 13-10-2018 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Pfam PF14492 Elongation Factor G, domain II 400 473 2.6E-33 T 13-10-2018 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Pfam PF00679 Elongation factor G C-terminus 595 681 6.8E-26 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 SUPERFAMILY SSF54980 598 687 3.74E-25 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Gene3D G3DSA:3.40.50.300 1 290 1.7E-102 T 13-10-2018 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Pfam PF00009 Elongation factor Tu GTP binding domain 7 279 8.5E-61 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Pfam PF03764 Elongation factor G, domain IV 475 593 2.7E-40 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Gene3D G3DSA:3.30.230.10 480 681 1.4E-77 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 SUPERFAMILY SSF54980 398 476 6.83E-24 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Hamap MF_00054_B Elongation factor G [fusA]. 4 686 105.973 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 SMART SM00838 595 682 1.2E-39 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 SUPERFAMILY SSF54211 475 594 2.07E-38 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Gene3D G3DSA:2.40.30.10 291 401 1.2E-28 T 13-10-2018 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 SUPERFAMILY SSF50447 248 398 1.66E-24 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 TIGRFAM TIGR00484 EF-G: translation elongation factor G 3 686 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.1E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.1E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 PRINTS PR00315 GTP-binding elongation factor signature 59 67 1.1E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.1E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 PRINTS PR00315 GTP-binding elongation factor signature 10 23 1.1E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Gene3D G3DSA:3.30.70.240 599 669 1.4E-77 T 13-10-2018 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 52 67 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 Pfam PF03144 Elongation factor Tu domain 2 321 387 8.3E-14 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 180 7.1E-25 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_2072 06c05dea555216af6b1c910cb7995f30 696 SUPERFAMILY SSF52540 4 280 1.2E-93 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1043 2dd87659d1b1d9a28a54deae9c95781f 107 SMART SM00530 11 66 1.9E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1043 2dd87659d1b1d9a28a54deae9c95781f 107 SUPERFAMILY SSF47413 3 70 7.24E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1043 2dd87659d1b1d9a28a54deae9c95781f 107 Gene3D G3DSA:1.10.260.40 1 74 3.2E-19 T 13-10-2018 Trebr_1043 2dd87659d1b1d9a28a54deae9c95781f 107 Pfam PF12844 Helix-turn-helix domain 9 70 1.2E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 Gene3D G3DSA:3.40.50.1000 411 713 7.7E-84 T 13-10-2018 IPR023214 HAD superfamily Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00943 Copper-transporting ATPase signature 353 367 1.9E-19 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00943 Copper-transporting ATPase signature 200 219 1.9E-19 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00943 Copper-transporting ATPase signature 148 167 1.9E-19 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00943 Copper-transporting ATPase signature 220 238 1.9E-19 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00943 Copper-transporting ATPase signature 128 146 1.9E-19 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00943 Copper-transporting ATPase signature 695 709 1.9E-19 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 SUPERFAMILY SSF81653 233 329 8.11E-30 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 Pfam PF00702 haloacid dehalogenase-like hydrolase 426 675 3.1E-42 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 432 438 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 Pfam PF00403 Heavy-metal-associated domain 8 66 6.7E-11 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 Gene3D G3DSA:2.70.150.20 224 334 2.6E-40 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 163 770 9.0E-178 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 Gene3D G3DSA:3.30.70.100 5 80 4.7E-17 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 SUPERFAMILY SSF81665 187 750 1.44E-12 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 280 294 7.6E-28 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 608 618 7.6E-28 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 586 597 7.6E-28 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 661 680 7.6E-28 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 684 696 7.6E-28 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 430 444 7.6E-28 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 Gene3D G3DSA:3.40.1110.10 441 593 7.7E-84 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 583 739 1.0E-42 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 203 464 3.6E-43 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 Pfam PF00122 E1-E2 ATPase 230 408 6.6E-56 T 13-10-2018 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 SUPERFAMILY SSF55008 3 74 1.11E-17 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Trebr_1858 07e2a144c4d30b0d3dcd1890d4fa1dde 775 SUPERFAMILY SSF56784 430 768 4.78E-54 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_1205 b1bab6913b971cb5816834d23755932c 684 Gene3D G3DSA:1.25.40.10 26 104 1.3E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1205 b1bab6913b971cb5816834d23755932c 684 SUPERFAMILY SSF48452 37 101 3.2E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1205 b1bab6913b971cb5816834d23755932c 684 SUPERFAMILY SSF53300 467 636 4.18E-6 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_1205 b1bab6913b971cb5816834d23755932c 684 Gene3D G3DSA:2.120.10.30 231 408 2.1E-27 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Trebr_1205 b1bab6913b971cb5816834d23755932c 684 Gene3D G3DSA:2.120.10.30 130 230 1.1E-5 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Trebr_1205 b1bab6913b971cb5816834d23755932c 684 SUPERFAMILY SSF101898 149 400 4.97E-30 T 13-10-2018 Trebr_0095 1fb34487f0dd7db94e1ffd31f8ab9616 340 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 42 327 3.2E-73 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Trebr_0095 1fb34487f0dd7db94e1ffd31f8ab9616 340 PIRSF PIRSF006470 3 340 4.9E-73 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Trebr_0095 1fb34487f0dd7db94e1ffd31f8ab9616 340 Gene3D G3DSA:3.40.190.170 36 339 3.8E-83 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Trebr_0095 1fb34487f0dd7db94e1ffd31f8ab9616 340 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 46 284 1.5E-54 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Trebr_2276 0887b705bff79e6e9c055414d3638d22 150 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 6 145 4.9E-51 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2276 0887b705bff79e6e9c055414d3638d22 150 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 148 19.57 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 Trebr_2276 0887b705bff79e6e9c055414d3638d22 150 Gene3D G3DSA:3.100.10.10 70 149 2.0E-23 T 13-10-2018 Trebr_2276 0887b705bff79e6e9c055414d3638d22 150 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 146 1.8E-37 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P Trebr_2276 0887b705bff79e6e9c055414d3638d22 150 SUPERFAMILY SSF52080 7 148 2.09E-41 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily Trebr_2276 0887b705bff79e6e9c055414d3638d22 150 ProSitePatterns PS00475 Ribosomal protein L15 signature. 112 142 - T 13-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2439 14c40a77b924f5e2bf6f806e65d507e4 1028 Gene3D G3DSA:3.40.50.300 477 653 2.4E-27 T 13-10-2018 Trebr_2439 14c40a77b924f5e2bf6f806e65d507e4 1028 Gene3D G3DSA:3.40.50.300 234 429 2.3E-39 T 13-10-2018 Trebr_2439 14c40a77b924f5e2bf6f806e65d507e4 1028 SMART SM00490 554 636 2.6E-10 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_2439 14c40a77b924f5e2bf6f806e65d507e4 1028 SMART SM00487 240 441 2.2E-15 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_2439 14c40a77b924f5e2bf6f806e65d507e4 1028 Pfam PF00271 Helicase conserved C-terminal domain 561 636 1.4E-4 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_2439 14c40a77b924f5e2bf6f806e65d507e4 1028 SUPERFAMILY SSF52540 256 645 1.48E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2439 14c40a77b924f5e2bf6f806e65d507e4 1028 Pfam PF00270 DEAD/DEAH box helicase 257 412 1.5E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 SMART SM01193 6 136 2.7E-80 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 6 427 7.9E-196 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 PRINTS PR00148 Enolase signature 163 176 7.0E-45 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 PRINTS PR00148 Enolase signature 367 384 7.0E-45 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 PRINTS PR00148 Enolase signature 315 326 7.0E-45 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 PRINTS PR00148 Enolase signature 109 125 7.0E-45 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 PRINTS PR00148 Enolase signature 338 352 7.0E-45 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 PRINTS PR00148 Enolase signature 39 53 7.0E-45 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 Gene3D G3DSA:3.20.20.120 130 433 1.3E-130 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 ProSitePatterns PS00164 Enolase signature. 338 351 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 Pfam PF00113 Enolase, C-terminal TIM barrel domain 143 426 6.3E-124 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 Pfam PF03952 Enolase, N-terminal domain 6 136 1.0E-51 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 Gene3D G3DSA:3.30.390.10 5 129 1.5E-48 T 13-10-2018 IPR029017 Enolase-like, N-terminal Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 Hamap MF_00318 Enolase [eno]. 4 415 42.786 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 PIRSF PIRSF001400 2 429 8.1E-180 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 SUPERFAMILY SSF54826 5 140 6.19E-51 T 13-10-2018 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 SMART SM01192 141 429 1.9E-203 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Trebr_0478 390ffaf7b2cac4297d794f034377aa91 434 SUPERFAMILY SSF51604 140 427 4.08E-122 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 SMART SM00342 203 286 5.2E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 Gene3D G3DSA:1.10.10.60 240 295 1.7E-18 T 13-10-2018 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 SUPERFAMILY SSF46689 239 288 7.17E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 Gene3D G3DSA:1.10.10.60 190 239 1.7E-9 T 13-10-2018 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 SUPERFAMILY SSF46689 187 236 2.67E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 240 282 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 Pfam PF12833 Helix-turn-helix domain 209 287 7.8E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 Gene3D G3DSA:2.60.120.280 35 172 3.3E-11 T 13-10-2018 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 1.3E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 1.3E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 SUPERFAMILY SSF51215 28 170 1.05E-21 T 13-10-2018 IPR037923 Transcription regulator HTH-like Trebr_0455 0bf5861d17b7b0a3382e177b8bb6dfe0 298 Pfam PF02311 AraC-like ligand binding domain 54 152 8.8E-9 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Trebr_1824 12f626ef3c08c5948efd328397bbf7f3 1030 Gene3D G3DSA:3.40.50.300 1 383 1.1E-37 T 13-10-2018 Trebr_1824 12f626ef3c08c5948efd328397bbf7f3 1030 Gene3D G3DSA:3.40.50.300 753 1024 2.2E-22 T 13-10-2018 Trebr_1824 12f626ef3c08c5948efd328397bbf7f3 1030 Pfam PF13476 AAA domain 5 250 1.0E-12 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain Trebr_1824 12f626ef3c08c5948efd328397bbf7f3 1030 SUPERFAMILY SSF52540 1 1015 7.63E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1824 12f626ef3c08c5948efd328397bbf7f3 1030 Pfam PF13558 Putative exonuclease SbcCD, C subunit 925 985 1.8E-12 T 13-10-2018 Trebr_1466 5c382c8c96a39a60c6d7344597c2fb61 231 Pfam PF00696 Amino acid kinase family 3 205 1.4E-23 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Trebr_1466 5c382c8c96a39a60c6d7344597c2fb61 231 PIRSF PIRSF005650 2 231 3.8E-46 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 Trebr_1466 5c382c8c96a39a60c6d7344597c2fb61 231 SUPERFAMILY SSF53633 3 230 1.11E-30 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_1466 5c382c8c96a39a60c6d7344597c2fb61 231 TIGRFAM TIGR02076 pyrH_arch: putative uridylate kinase 4 230 1.6E-55 T 13-10-2018 IPR011818 Uridylate kinase, archaeal/spirochete, putative GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 Trebr_1466 5c382c8c96a39a60c6d7344597c2fb61 231 Gene3D G3DSA:3.40.1160.10 4 231 3.9E-46 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 Gene3D G3DSA:3.20.20.60 244 556 1.2E-99 T 13-10-2018 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 Pfam PF00391 PEP-utilising enzyme, mobile domain 153 225 3.3E-18 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 479 494 1.4E-19 T 13-10-2018 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 308 327 1.4E-19 T 13-10-2018 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 462 477 1.4E-19 T 13-10-2018 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 515 527 1.4E-19 T 13-10-2018 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 Gene3D G3DSA:1.10.274.10 23 146 2.0E-63 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 SUPERFAMILY SSF51621 275 554 3.4E-88 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 462 480 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 Gene3D G3DSA:3.50.30.10 6 234 2.0E-63 T 13-10-2018 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 PIRSF PIRSF000732 1 556 4.2E-169 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 SUPERFAMILY SSF52009 125 240 9.55E-26 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 276 554 8.4E-92 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 5 554 2.3E-140 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 Pfam PF05524 PEP-utilising enzyme, N-terminal 5 126 1.9E-26 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Trebr_0238 b8050bc9cfd6463baad2c566dd6d0fa9 556 SUPERFAMILY SSF47831 30 143 6.67E-27 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Trebr_0817 a6daede526a469d2b363998ab9e2127a 260 Gene3D G3DSA:3.40.50.1110 61 260 3.4E-10 T 13-10-2018 IPR036514 SGNH hydrolase superfamily Trebr_0817 a6daede526a469d2b363998ab9e2127a 260 SUPERFAMILY SSF52266 58 259 3.66E-9 T 13-10-2018 Trebr_2055 b65a19f445adcf70c69fa9a3033c8e3e 261 SUPERFAMILY SSF53448 1 221 2.95E-70 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2055 b65a19f445adcf70c69fa9a3033c8e3e 261 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 18 97 2.2E-14 T 13-10-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif Trebr_2055 b65a19f445adcf70c69fa9a3033c8e3e 261 Gene3D G3DSA:3.90.550.20 1 230 6.2E-38 T 13-10-2018 Trebr_0494 eac8993d3172aa6fc99f5d40bdaf9a71 456 Pfam PF01554 MatE 250 409 1.6E-19 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0494 eac8993d3172aa6fc99f5d40bdaf9a71 456 Pfam PF01554 MatE 23 186 6.2E-21 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0494 eac8993d3172aa6fc99f5d40bdaf9a71 456 PIRSF PIRSF006603 1 451 9.8E-76 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0494 eac8993d3172aa6fc99f5d40bdaf9a71 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 416 2.3E-57 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1906 feac39d07bb568d2061fc35bd6375f33 565 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 73 495 9.1E-93 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Trebr_1906 feac39d07bb568d2061fc35bd6375f33 565 Pfam PF00795 Carbon-nitrogen hydrolase 245 513 1.8E-24 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Trebr_1906 feac39d07bb568d2061fc35bd6375f33 565 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 21 534 17.0 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Trebr_1906 feac39d07bb568d2061fc35bd6375f33 565 SUPERFAMILY SSF56317 240 515 1.24E-38 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Trebr_1906 feac39d07bb568d2061fc35bd6375f33 565 Gene3D G3DSA:3.60.110.10 235 520 7.9E-17 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Trebr_1190 1a918fcb458e69da9e1b5a5f0d963661 363 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4 354 1.5E-116 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Trebr_1190 1a918fcb458e69da9e1b5a5f0d963661 363 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 5 363 29.556 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Trebr_1190 1a918fcb458e69da9e1b5a5f0d963661 363 Gene3D G3DSA:3.30.413.10 271 362 6.8E-29 T 13-10-2018 Trebr_1190 1a918fcb458e69da9e1b5a5f0d963661 363 SUPERFAMILY SSF51717 52 216 2.51E-5 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_1190 1a918fcb458e69da9e1b5a5f0d963661 363 SUPERFAMILY SSF56014 275 344 4.36E-10 T 13-10-2018 Trebr_1190 1a918fcb458e69da9e1b5a5f0d963661 363 PIRSF PIRSF004640 1 361 4.7E-123 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Trebr_1190 1a918fcb458e69da9e1b5a5f0d963661 363 Gene3D G3DSA:3.20.20.20 1 269 2.8E-79 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_1190 1a918fcb458e69da9e1b5a5f0d963661 363 Pfam PF04551 GcpE protein 16 353 1.8E-113 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Trebr_0954 41d2eaaa8c43132535cc4bb88d9eb822 311 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 19 104 1.9E-9 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Trebr_0954 41d2eaaa8c43132535cc4bb88d9eb822 311 SUPERFAMILY SSF47823 18 110 1.73E-5 T 13-10-2018 Trebr_0954 41d2eaaa8c43132535cc4bb88d9eb822 311 SUPERFAMILY SSF56349 125 299 1.0E-50 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Trebr_0954 41d2eaaa8c43132535cc4bb88d9eb822 311 Gene3D G3DSA:1.10.443.10 125 302 5.0E-61 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Trebr_0954 41d2eaaa8c43132535cc4bb88d9eb822 311 Pfam PF00589 Phage integrase family 126 295 2.6E-44 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Trebr_0954 41d2eaaa8c43132535cc4bb88d9eb822 311 Gene3D G3DSA:1.10.150.130 13 122 2.3E-10 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 Gene3D G3DSA:2.70.98.10 430 712 1.0E-86 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 Gene3D G3DSA:2.60.220.10 714 856 1.7E-19 T 13-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 432 702 4.0E-77 T 13-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 717 798 9.2E-6 T 13-10-2018 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 SUPERFAMILY SSF48230 43 424 5.04E-70 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 66 380 1.1E-58 T 13-10-2018 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 SUPERFAMILY SSF74650 431 719 6.28E-73 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 SUPERFAMILY SSF49863 714 803 6.54E-7 T 13-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 Trebr_1552 435a5391322c5a0c4be043a6928037d4 858 Gene3D G3DSA:1.50.10.100 42 429 4.5E-91 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 Gene3D G3DSA:3.40.50.460 137 363 6.4E-120 T 13-10-2018 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 SUPERFAMILY SSF53784 3 357 4.32E-85 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 Pfam PF00365 Phosphofructokinase 6 315 2.2E-48 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 2 411 35.032 T 13-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 171 187 5.9E-9 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 132 149 5.9E-9 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 5.9E-9 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 97 113 5.9E-9 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 Gene3D G3DSA:3.40.50.450 4 349 6.4E-120 T 13-10-2018 Trebr_2388 5bcb1c23acb0fb85f178100db277135c 411 PIRSF PIRSF036483 1 371 3.5E-99 T 13-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 SMART SM00267 591 763 1.4E-50 T 13-10-2018 IPR000160 GGDEF domain Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 SUPERFAMILY SSF103190 89 184 2.88E-5 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 Pfam PF02743 Cache domain 49 279 3.1E-13 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 Gene3D G3DSA:3.30.450.20 161 299 1.6E-10 T 13-10-2018 Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 599 762 3.7E-41 T 13-10-2018 IPR000160 GGDEF domain Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 SUPERFAMILY SSF55073 607 764 3.77E-41 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 Gene3D G3DSA:3.30.450.20 374 469 2.0E-6 T 13-10-2018 Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 Pfam PF00990 Diguanylate cyclase, GGDEF domain 602 759 1.4E-42 T 13-10-2018 IPR000160 GGDEF domain Trebr_0233 70892f0403aa9b7aec6189e31ae8ff5f 807 Gene3D G3DSA:3.30.70.270 589 765 1.7E-48 T 13-10-2018 Trebr_0486 e8b95436c3e8cd6d20cfb974cae6e778 513 SUPERFAMILY SSF56281 4 513 1.43E-109 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_0486 e8b95436c3e8cd6d20cfb974cae6e778 513 Gene3D G3DSA:3.60.15.10 3 191 2.8E-55 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_0486 e8b95436c3e8cd6d20cfb974cae6e778 513 SMART SM01027 301 427 3.9E-53 T 13-10-2018 IPR022712 Beta-Casp domain Trebr_0486 e8b95436c3e8cd6d20cfb974cae6e778 513 Pfam PF10996 Beta-Casp domain 301 427 5.0E-26 T 13-10-2018 IPR022712 Beta-Casp domain Trebr_0486 e8b95436c3e8cd6d20cfb974cae6e778 513 SMART SM00849 17 296 3.8E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_0486 e8b95436c3e8cd6d20cfb974cae6e778 513 Pfam PF16661 Metallo-beta-lactamase superfamily domain 20 175 3.9E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_0486 e8b95436c3e8cd6d20cfb974cae6e778 513 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 441 498 4.2E-12 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Trebr_0486 e8b95436c3e8cd6d20cfb974cae6e778 513 Gene3D G3DSA:3.40.50.10890 270 452 2.2E-53 T 13-10-2018 Trebr_0327 820ee6cf19b4b4f0f1b0d21de5a4327a 575 Pfam PF00501 AMP-binding enzyme 33 463 1.5E-96 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Trebr_0327 820ee6cf19b4b4f0f1b0d21de5a4327a 575 SUPERFAMILY SSF56801 18 571 7.59E-118 T 13-10-2018 Trebr_0327 820ee6cf19b4b4f0f1b0d21de5a4327a 575 Gene3D G3DSA:3.30.300.30 458 573 2.2E-8 T 13-10-2018 Trebr_0327 820ee6cf19b4b4f0f1b0d21de5a4327a 575 Gene3D G3DSA:3.40.50.12780 22 293 5.4E-57 T 13-10-2018 Trebr_0327 820ee6cf19b4b4f0f1b0d21de5a4327a 575 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 13-10-2018 IPR020845 AMP-binding, conserved site Trebr_0327 820ee6cf19b4b4f0f1b0d21de5a4327a 575 Gene3D G3DSA:3.40.50.12780 302 453 1.5E-40 T 13-10-2018 Trebr_1700 22f710aecb51af8ad44bf87d0f558155 112 Pfam PF01990 ATP synthase (F/14-kDa) subunit 5 102 5.9E-12 T 13-10-2018 IPR008218 ATPase, V1 complex, subunit F GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1700 22f710aecb51af8ad44bf87d0f558155 112 SUPERFAMILY SSF159468 4 112 1.31E-14 T 13-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1700 22f710aecb51af8ad44bf87d0f558155 112 Gene3D G3DSA:3.40.50.10580 4 110 5.3E-18 T 13-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 37 46 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 SUPERFAMILY SSF52374 29 354 2.29E-74 T 13-10-2018 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 41 57 1.0E-20 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 224 234 1.0E-20 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 170 191 1.0E-20 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 92 111 1.0E-20 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 Pfam PF00579 tRNA synthetases class I (W and Y) 27 309 4.4E-54 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 28 352 1.0E-69 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 Gene3D G3DSA:1.10.240.10 216 322 1.3E-98 T 13-10-2018 Trebr_1374 efd980a6be4f42b107c943d1e29a7548 356 Gene3D G3DSA:3.40.50.620 30 352 1.3E-98 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0380 081a954bf99c3536a1046d5cb722db3b 3722 Pfam PF12245 Bacterial Ig-like domain (group 3) 2748 2765 3.5 T 13-10-2018 IPR022038 Bacterial Ig-like domain Trebr_0380 081a954bf99c3536a1046d5cb722db3b 3722 Pfam PF12245 Bacterial Ig-like domain (group 3) 1128 1146 0.26 T 13-10-2018 IPR022038 Bacterial Ig-like domain Trebr_0380 081a954bf99c3536a1046d5cb722db3b 3722 Pfam PF12245 Bacterial Ig-like domain (group 3) 1719 1737 0.22 T 13-10-2018 IPR022038 Bacterial Ig-like domain Trebr_0380 081a954bf99c3536a1046d5cb722db3b 3722 Gene3D G3DSA:2.60.40.10 2017 2127 3.5E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0380 081a954bf99c3536a1046d5cb722db3b 3722 ProSitePatterns PS00018 EF-hand calcium-binding domain. 2787 2799 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 SMART SM00382 412 560 7.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 SUPERFAMILY SSF52540 377 627 8.52E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Hamap MF_01973 Lon protease [lon]. 75 912 61.82 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Gene3D G3DSA:1.10.8.60 556 647 3.5E-24 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 75 265 6.4E-36 T 13-10-2018 IPR003111 Lon, substrate-binding domain Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 SUPERFAMILY SSF54211 737 912 9.48E-50 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 SMART SM00464 74 265 1.2E-53 T 13-10-2018 IPR003111 Lon, substrate-binding domain Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 416 553 6.9E-21 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Gene3D G3DSA:2.30.130.40 64 181 5.3E-24 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 SUPERFAMILY SSF88697 75 264 7.21E-34 T 13-10-2018 IPR015947 PUA-like superfamily Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 TIGRFAM TIGR00763 lon: endopeptidase La 77 913 8.1E-293 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 PIRSF PIRSF001174 63 643 5.2E-209 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 PIRSF PIRSF001174 679 913 2.9E-85 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Gene3D G3DSA:3.30.230.10 726 913 2.9E-74 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Gene3D G3DSA:3.40.50.300 377 555 1.4E-63 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 845 864 3.1E-49 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 736 752 3.1E-49 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 868 886 3.1E-49 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 815 834 3.1E-49 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 420 439 3.1E-49 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 711 912 8.5E-81 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 Gene3D G3DSA:1.20.58.1480 184 307 5.9E-34 T 13-10-2018 Trebr_1531 c862f8d237304178cc7d6626c7519e3a 913 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 818 826 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 3.6E-22 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 3.6E-22 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 3.6E-22 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 92 2.1E-45 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 Gene3D G3DSA:3.30.860.10 1 92 2.6E-35 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 SUPERFAMILY SSF54570 2 84 1.29E-32 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.805 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 Pfam PF00203 Ribosomal protein S19 3 83 7.2E-33 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2291 839e65222abd5d38bbbd699a2623faa7 92 PIRSF PIRSF002144 1 92 3.4E-30 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 Pfam PF03705 CheR methyltransferase, all-alpha domain 15 66 2.4E-13 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 Gene3D G3DSA:3.40.50.150 83 284 3.5E-64 T 13-10-2018 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 Pfam PF01739 CheR methyltransferase, SAM binding domain 84 275 1.4E-59 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 SUPERFAMILY SSF47757 6 83 1.44E-15 T 13-10-2018 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 PIRSF PIRSF000410 2 284 1.2E-98 T 13-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 SUPERFAMILY SSF53335 84 280 7.27E-53 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 152 168 2.3E-45 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 243 266 2.3E-45 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 115 135 2.3E-45 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 224 238 2.3E-45 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 36 49 2.3E-45 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 77 89 2.3E-45 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 Gene3D G3DSA:1.10.155.10 4 82 1.9E-19 T 13-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily Trebr_0104 298c2570bf57bdd20bc79e4b8d816cf8 284 SMART SM00138 14 284 1.0E-93 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 SUPERFAMILY SSF55031 227 337 3.49E-26 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 TIGRFAM TIGR01882 peptidase-T: peptidase T 13 422 6.8E-108 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 Gene3D G3DSA:3.30.70.360 227 337 3.6E-153 T 13-10-2018 Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 Gene3D G3DSA:3.40.630.10 14 418 3.6E-153 T 13-10-2018 Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 Pfam PF07687 Peptidase dimerisation domain 228 320 5.5E-6 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 PIRSF PIRSF037215 10 425 1.3E-142 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 SUPERFAMILY SSF53187 12 420 5.43E-63 T 13-10-2018 Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 87 96 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Trebr_2242 e7f3f1cb35a2e8cee2c2473a60aa707e 431 Pfam PF01546 Peptidase family M20/M25/M40 152 420 5.1E-11 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 SUPERFAMILY SSF53732 1 429 2.22E-138 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 Gene3D G3DSA:3.30.499.20 4 278 3.0E-91 T 13-10-2018 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 Gene3D G3DSA:3.30.499.10 282 430 3.4E-51 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 ProSitePatterns PS01244 Aconitase family signature 2. 365 378 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 ProSitePatterns PS00450 Aconitase family signature 1. 300 316 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 Pfam PF00330 Aconitase family (aconitate hydratase) 7 423 4.8E-106 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 4 427 1.1E-141 T 13-10-2018 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 PRINTS PR00415 Aconitase family signature 101 109 1.8E-27 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 PRINTS PR00415 Aconitase family signature 188 201 1.8E-27 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 PRINTS PR00415 Aconitase family signature 112 125 1.8E-27 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 PRINTS PR00415 Aconitase family signature 126 141 1.8E-27 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 PRINTS PR00415 Aconitase family signature 202 215 1.8E-27 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 PRINTS PR00415 Aconitase family signature 304 315 1.8E-27 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_1398 c80b6e5d39eec65857cb67c391a64393 436 PRINTS PR00415 Aconitase family signature 365 378 1.8E-27 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Trebr_0925 8b5385dc2796e71d842624d355b352f3 419 Pfam PF02687 FtsX-like permease family 311 413 4.5E-14 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_2331 be97de3e00e4e6efd0ea0c47db428c91 375 SUPERFAMILY SSF55781 26 192 2.35E-11 T 13-10-2018 Trebr_2331 be97de3e00e4e6efd0ea0c47db428c91 375 Gene3D G3DSA:3.30.450.40 9 194 3.6E-10 T 13-10-2018 IPR029016 GAF-like domain superfamily Trebr_2331 be97de3e00e4e6efd0ea0c47db428c91 375 Gene3D G3DSA:3.30.70.270 195 370 6.3E-49 T 13-10-2018 Trebr_2331 be97de3e00e4e6efd0ea0c47db428c91 375 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 191 358 2.1E-47 T 13-10-2018 IPR000160 GGDEF domain Trebr_2331 be97de3e00e4e6efd0ea0c47db428c91 375 SUPERFAMILY SSF55073 197 360 2.2E-43 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_2331 be97de3e00e4e6efd0ea0c47db428c91 375 SMART SM00267 180 358 8.1E-49 T 13-10-2018 IPR000160 GGDEF domain Trebr_2331 be97de3e00e4e6efd0ea0c47db428c91 375 Pfam PF00990 Diguanylate cyclase, GGDEF domain 193 354 2.5E-41 T 13-10-2018 IPR000160 GGDEF domain Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 SUPERFAMILY SSF56024 354 518 1.73E-40 T 13-10-2018 Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 Pfam PF13091 PLD-like domain 381 505 2.3E-23 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 Pfam PF13091 PLD-like domain 163 273 1.5E-10 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 Gene3D G3DSA:3.30.870.10 361 536 5.3E-30 T 13-10-2018 Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 Gene3D G3DSA:3.30.870.10 141 324 1.8E-37 T 13-10-2018 Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 SUPERFAMILY SSF56024 133 324 2.92E-38 T 13-10-2018 Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 SMART SM00155 453 480 3.4E-5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 SMART SM00155 245 272 2.1E-4 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Trebr_2492 cdab3c7ccb02701c8f63c9baeae76031 539 Pfam PF13396 Phospholipase_D-nuclease N-terminal 49 87 7.0E-6 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal Trebr_1609 b1f0b46273d7678d958e14b7949a094c 359 Gene3D G3DSA:3.30.750.80 14 132 1.1E-25 T 13-10-2018 Trebr_1609 b1f0b46273d7678d958e14b7949a094c 359 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 121 310 3.9E-22 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Trebr_1609 b1f0b46273d7678d958e14b7949a094c 359 SUPERFAMILY SSF53335 17 312 1.28E-52 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1609 b1f0b46273d7678d958e14b7949a094c 359 Gene3D G3DSA:3.40.50.150 133 357 9.7E-71 T 13-10-2018 Trebr_2371 6f74f8ac82dd9e7951a3ebe0851c8fd8 809 Pfam PF01734 Patatin-like phospholipase 43 233 1.3E-24 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Trebr_2371 6f74f8ac82dd9e7951a3ebe0851c8fd8 809 Pfam PF01103 Surface antigen 499 668 2.6E-7 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Trebr_2371 6f74f8ac82dd9e7951a3ebe0851c8fd8 809 Gene3D G3DSA:3.40.1090.10 137 291 2.5E-17 T 13-10-2018 Trebr_2371 6f74f8ac82dd9e7951a3ebe0851c8fd8 809 Gene3D G3DSA:3.40.1090.10 25 136 9.3E-25 T 13-10-2018 Trebr_2371 6f74f8ac82dd9e7951a3ebe0851c8fd8 809 Gene3D G3DSA:2.40.160.50 474 698 1.8E-8 T 13-10-2018 Trebr_2371 6f74f8ac82dd9e7951a3ebe0851c8fd8 809 SUPERFAMILY SSF52151 38 287 9.68E-44 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 Pfam PF00270 DEAD/DEAH box helicase 30 194 1.3E-47 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 Gene3D G3DSA:3.40.50.300 218 376 7.9E-48 T 13-10-2018 Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 SMART SM00490 258 339 7.3E-33 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 Pfam PF00271 Helicase conserved C-terminal domain 230 339 3.7E-28 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 SMART SM00487 24 224 1.8E-59 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 SUPERFAMILY SSF52540 74 359 3.86E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 Pfam PF03880 DbpA RNA binding domain 483 541 6.8E-10 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Trebr_0577 728ffd875baca3dc9c1cf183e00ce27f 632 Gene3D G3DSA:3.40.50.300 2 211 2.8E-72 T 13-10-2018 Trebr_0508 69a90903582a923862a981161780a099 863 SMART SM00382 574 738 5.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0508 69a90903582a923862a981161780a099 863 SMART SM00382 255 399 1.5E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0508 69a90903582a923862a981161780a099 863 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 350 362 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Trebr_0508 69a90903582a923862a981161780a099 863 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 605 623 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 Trebr_0508 69a90903582a923862a981161780a099 863 SMART SM01086 741 830 2.8E-21 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_0508 69a90903582a923862a981161780a099 863 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 578 596 1.7E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_0508 69a90903582a923862a981161780a099 863 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 682 696 1.7E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_0508 69a90903582a923862a981161780a099 863 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 620 638 1.7E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_0508 69a90903582a923862a981161780a099 863 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 649 667 1.7E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 Trebr_0508 69a90903582a923862a981161780a099 863 SUPERFAMILY SSF52540 523 821 7.64E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0508 69a90903582a923862a981161780a099 863 Gene3D G3DSA:1.10.1780.10 2 138 1.2E-26 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Trebr_0508 69a90903582a923862a981161780a099 863 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 4 822 9.4E-304 T 13-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 Trebr_0508 69a90903582a923862a981161780a099 863 SUPERFAMILY SSF81923 3 136 4.32E-32 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Trebr_0508 69a90903582a923862a981161780a099 863 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 20 63 1.1E-4 T 13-10-2018 IPR004176 Clp, N-terminal Trebr_0508 69a90903582a923862a981161780a099 863 Gene3D G3DSA:1.10.8.60 742 840 2.7E-20 T 13-10-2018 Trebr_0508 69a90903582a923862a981161780a099 863 Gene3D G3DSA:3.40.50.300 208 398 7.3E-59 T 13-10-2018 Trebr_0508 69a90903582a923862a981161780a099 863 SUPERFAMILY SSF52540 216 460 8.11E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0508 69a90903582a923862a981161780a099 863 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 743 820 2.0E-18 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_0508 69a90903582a923862a981161780a099 863 Pfam PF07724 AAA domain (Cdc48 subfamily) 575 734 1.3E-46 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_0508 69a90903582a923862a981161780a099 863 Gene3D G3DSA:1.10.8.60 400 481 1.1E-26 T 13-10-2018 Trebr_0508 69a90903582a923862a981161780a099 863 Gene3D G3DSA:3.40.50.300 504 739 1.6E-79 T 13-10-2018 Trebr_0508 69a90903582a923862a981161780a099 863 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 260 371 6.0E-9 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 Pfam PF10509 Galactokinase galactose-binding signature 26 75 1.5E-19 T 13-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PRINTS PR00473 Galactokinase signature 109 120 4.5E-19 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PRINTS PR00473 Galactokinase signature 45 63 4.5E-19 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PRINTS PR00473 Galactokinase signature 130 148 4.5E-19 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PRINTS PR00473 Galactokinase signature 293 307 4.5E-19 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 Pfam PF08544 GHMP kinases C terminal 309 390 1.1E-9 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 Gene3D G3DSA:3.30.70.890 220 385 1.9E-119 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 SUPERFAMILY SSF54211 22 221 1.52E-52 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 TIGRFAM TIGR00131 gal_kin: galactokinase 25 408 4.9E-92 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PRINTS PR00959 Mevalonate kinase family signature 43 67 8.5E-35 T 13-10-2018 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PRINTS PR00959 Mevalonate kinase family signature 137 159 8.5E-35 T 13-10-2018 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PRINTS PR00959 Mevalonate kinase family signature 180 199 8.5E-35 T 13-10-2018 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PRINTS PR00959 Mevalonate kinase family signature 357 374 8.5E-35 T 13-10-2018 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 Pfam PF00288 GHMP kinases N terminal domain 137 196 2.8E-11 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 PIRSF PIRSF000530 10 411 1.5E-115 T 13-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 Hamap MF_00246 Galactokinase [galK]. 43 410 39.441 T 13-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 SUPERFAMILY SSF55060 223 410 3.5E-47 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Trebr_2367 75b3d88cc9d31bd9ab1cbf29331de188 411 Gene3D G3DSA:3.30.230.10 40 219 1.9E-119 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_0228 9f780fc9a902e3e9768497a32088af92 253 Gene3D G3DSA:3.90.640.20 164 253 1.0E-15 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily Trebr_0228 9f780fc9a902e3e9768497a32088af92 253 Gene3D G3DSA:3.30.565.40 33 153 1.5E-10 T 13-10-2018 Trebr_0228 9f780fc9a902e3e9768497a32088af92 253 Pfam PF13739 Domain of unknown function (DUF4163) 43 138 7.2E-9 T 13-10-2018 IPR025303 Deacetylase PdaC Trebr_0228 9f780fc9a902e3e9768497a32088af92 253 Pfam PF11738 Protein of unknown function (DUF3298) 165 252 2.1E-10 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 Trebr_0625 ee6894aec68fc62834bdc1dfe20a50a0 195 ProDom PD155205 TRANSMEMBRANE MEMBRANE TP0733 TP0126 18 194 4.0E-25 T 13-10-2018 Trebr_0369 52397d587b098f08965187d53f2bbea0 346 SUPERFAMILY SSF47240 20 343 1.08E-93 T 13-10-2018 IPR009078 Ferritin-like superfamily Trebr_0369 52397d587b098f08965187d53f2bbea0 346 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 118 134 - T 13-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0369 52397d587b098f08965187d53f2bbea0 346 Gene3D G3DSA:1.10.620.20 8 319 1.8E-95 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 Trebr_0369 52397d587b098f08965187d53f2bbea0 346 Pfam PF00268 Ribonucleotide reductase, small chain 31 304 1.5E-82 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_0369 52397d587b098f08965187d53f2bbea0 346 PIRSF PIRSF000355 1 346 2.4E-120 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 517 558 5.2E-8 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 Gene3D G3DSA:3.40.120.10 213 332 8.5E-24 T 13-10-2018 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 SUPERFAMILY SSF53738 212 318 4.71E-20 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 147 156 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 SUPERFAMILY SSF53738 309 459 2.86E-31 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 SUPERFAMILY SSF53738 34 242 4.12E-46 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 Gene3D G3DSA:3.40.120.10 333 458 2.0E-35 T 13-10-2018 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 254 4.8E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 301 316 4.8E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 146 160 4.8E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 330 456 1.3E-19 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 Gene3D G3DSA:3.40.120.10 37 196 1.9E-46 T 13-10-2018 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 SUPERFAMILY SSF55957 448 581 8.37E-11 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 46 187 3.4E-41 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1592 cee5f70c048db0825c5e189b99f94af8 590 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 214 317 2.8E-25 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1843 0c7573298fc9cabbaef811cdc3e11106 79 Pfam PF02609 Exonuclease VII small subunit 4 55 3.3E-14 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Trebr_1843 0c7573298fc9cabbaef811cdc3e11106 79 Gene3D G3DSA:1.10.287.1040 1 70 1.3E-15 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 Trebr_1843 0c7573298fc9cabbaef811cdc3e11106 79 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 3 59 5.3E-16 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Trebr_1843 0c7573298fc9cabbaef811cdc3e11106 79 SUPERFAMILY SSF116842 3 63 4.05E-15 T 13-10-2018 Trebr_1843 0c7573298fc9cabbaef811cdc3e11106 79 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 2 44 9.0E-8 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Trebr_1843 0c7573298fc9cabbaef811cdc3e11106 79 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 3 63 12.34 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Trebr_1843 0c7573298fc9cabbaef811cdc3e11106 79 PIRSF PIRSF006488 1 72 5.4E-16 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 31 377 2.3E-117 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 Gene3D G3DSA:3.40.1690.10 242 378 1.4E-52 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 Pfam PF01312 FlhB HrpN YscU SpaS Family 32 372 6.9E-119 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 SUPERFAMILY SSF160544 269 376 4.71E-37 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 253 270 3.3E-41 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 297 312 3.3E-41 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 327 348 3.3E-41 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 34 56 3.3E-41 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Trebr_1140 b70c6c2830517251566eb05c2c29d64d 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 233 251 3.3E-41 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 PIRSF PIRSF002888 1 334 1.8E-118 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 Gene3D G3DSA:2.30.330.10 245 334 8.3E-8 T 13-10-2018 IPR036429 SpoA-like superfamily Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 PRINTS PR00955 Flagellar motor switch protein FliM signature 90 106 8.6E-34 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 8.6E-34 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 PRINTS PR00955 Flagellar motor switch protein FliM signature 115 134 8.6E-34 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 8.6E-34 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 324 4.1E-123 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 SUPERFAMILY SSF101801 250 327 5.89E-15 T 13-10-2018 IPR036429 SpoA-like superfamily Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 253 324 1.4E-20 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 SUPERFAMILY SSF103039 45 230 5.23E-28 T 13-10-2018 IPR028976 CheC-like superfamily Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 Pfam PF02154 Flagellar motor switch protein FliM 39 229 1.5E-87 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Trebr_1600 ba0c951b646345e61bfa8c500903f07d 344 Gene3D G3DSA:3.40.1550.10 45 231 1.8E-67 T 13-10-2018 IPR028976 CheC-like superfamily Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 SUPERFAMILY SSF46767 103 183 7.32E-32 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 30 100 5.5E-5 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 154 160 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 33 184 37.979 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 105 183 7.4E-32 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 104 183 1.3E-34 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 SUPERFAMILY SSF53155 31 107 4.9E-14 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 Gene3D G3DSA:1.10.10.10 101 185 2.5E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2322 e9b5e73be4948762b2403a6101297a4b 192 Gene3D G3DSA:3.30.160.70 28 99 5.1E-14 T 13-10-2018 Trebr_1026 0e70f9c34f5d952ec7ede5ba658fc8b2 173 SUPERFAMILY SSF52218 1 170 1.47E-16 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_1026 0e70f9c34f5d952ec7ede5ba658fc8b2 173 Pfam PF12641 Flavodoxin domain 4 163 1.0E-51 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Trebr_1026 0e70f9c34f5d952ec7ede5ba658fc8b2 173 Gene3D G3DSA:3.40.50.360 4 136 1.1E-14 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_1026 0e70f9c34f5d952ec7ede5ba658fc8b2 173 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Trebr_1368 f16d8cb197874c5dbf75ff2e6c8339d3 528 Gene3D G3DSA:3.40.50.2000 14 525 1.3E-73 T 13-10-2018 Trebr_1368 f16d8cb197874c5dbf75ff2e6c8339d3 528 Pfam PF08323 Starch synthase catalytic domain 13 255 1.2E-31 T 13-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Trebr_1368 f16d8cb197874c5dbf75ff2e6c8339d3 528 Gene3D G3DSA:3.40.50.2000 280 511 1.3E-73 T 13-10-2018 Trebr_1368 f16d8cb197874c5dbf75ff2e6c8339d3 528 Pfam PF00534 Glycosyl transferases group 1 341 483 3.4E-11 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_1368 f16d8cb197874c5dbf75ff2e6c8339d3 528 SUPERFAMILY SSF53756 14 519 2.63E-52 T 13-10-2018 Trebr_1942 bd3c1b16681f2ed3e07aecc9e3869bac 632 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 370 457 7.2E-6 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1942 bd3c1b16681f2ed3e07aecc9e3869bac 632 SUPERFAMILY SSF53738 39 182 6.28E-20 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1942 bd3c1b16681f2ed3e07aecc9e3869bac 632 Gene3D G3DSA:3.40.120.10 346 441 6.3E-15 T 13-10-2018 Trebr_1942 bd3c1b16681f2ed3e07aecc9e3869bac 632 SUPERFAMILY SSF55957 559 614 7.85E-5 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_1942 bd3c1b16681f2ed3e07aecc9e3869bac 632 Gene3D G3DSA:3.40.120.10 249 458 6.3E-15 T 13-10-2018 Trebr_1942 bd3c1b16681f2ed3e07aecc9e3869bac 632 Gene3D G3DSA:3.40.120.10 49 195 2.6E-16 T 13-10-2018 Trebr_1942 bd3c1b16681f2ed3e07aecc9e3869bac 632 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 62 181 8.5E-19 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 Gene3D G3DSA:3.90.650.10 890 1059 4.0E-5 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 SUPERFAMILY SSF55326 709 882 8.37E-29 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 Pfam PF02769 AIR synthase related protein, C-terminal domain 469 619 8.5E-22 T 13-10-2018 IPR010918 PurM-like, C-terminal domain Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 SUPERFAMILY SSF56042 468 635 1.29E-37 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 SMART SM01211 1128 1409 2.3E-96 T 13-10-2018 Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 SUPERFAMILY SSF56042 893 962 5.38E-6 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 Gene3D G3DSA:3.90.650.10 455 634 5.6E-45 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 Gene3D G3DSA:1.10.8.750 171 225 1.9E-5 T 13-10-2018 Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 Gene3D G3DSA:3.40.50.880 1085 1381 2.8E-76 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 SUPERFAMILY SSF55326 202 457 1.26E-30 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 Gene3D G3DSA:3.30.1330.10 725 884 7.9E-28 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 SUPERFAMILY SSF52317 1127 1372 4.13E-64 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1128 1372 4.6E-79 T 13-10-2018 Trebr_2138 1d4423d9d004854982416b142d87ebba 1410 Pfam PF00586 AIR synthase related protein, N-terminal domain 788 881 0.0056 T 13-10-2018 IPR016188 PurM-like, N-terminal domain Trebr_2323 55e80d85ba2dfd99498ab2120a9b3127 304 SUPERFAMILY SSF53474 12 302 4.09E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2323 55e80d85ba2dfd99498ab2120a9b3127 304 Gene3D G3DSA:3.40.50.1820 2 304 2.9E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2323 55e80d85ba2dfd99498ab2120a9b3127 304 Pfam PF12146 Serine aminopeptidase, S33 27 290 2.0E-46 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 Trebr_2254 88a95517ed49325fe9addc49da734548 508 SMART SM00228 120 198 8.3E-18 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_2254 88a95517ed49325fe9addc49da734548 508 SMART SM00245 199 389 3.5E-68 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Trebr_2254 88a95517ed49325fe9addc49da734548 508 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 73 400 2.9E-92 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Trebr_2254 88a95517ed49325fe9addc49da734548 508 Pfam PF03572 Peptidase family S41 224 388 1.8E-53 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Trebr_2254 88a95517ed49325fe9addc49da734548 508 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 120 195 2.7E-9 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_2254 88a95517ed49325fe9addc49da734548 508 Gene3D G3DSA:2.30.42.10 120 213 5.6E-87 T 13-10-2018 Trebr_2254 88a95517ed49325fe9addc49da734548 508 SUPERFAMILY SSF52096 62 393 5.47E-66 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Trebr_2254 88a95517ed49325fe9addc49da734548 508 Gene3D G3DSA:3.30.750.44 64 364 5.6E-87 T 13-10-2018 Trebr_2254 88a95517ed49325fe9addc49da734548 508 SUPERFAMILY SSF50156 95 221 3.14E-20 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_2254 88a95517ed49325fe9addc49da734548 508 Gene3D G3DSA:3.90.226.10 214 386 5.6E-87 T 13-10-2018 Trebr_1620 e8726f8b8d4df1d7ec08102e5cc647b1 244 Gene3D G3DSA:1.10.10.10 156 244 2.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1620 e8726f8b8d4df1d7ec08102e5cc647b1 244 SMART SM00448 1 112 4.0E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1620 e8726f8b8d4df1d7ec08102e5cc647b1 244 Pfam PF00072 Response regulator receiver domain 4 113 2.6E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1620 e8726f8b8d4df1d7ec08102e5cc647b1 244 SUPERFAMILY SSF46894 162 243 2.75E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_1620 e8726f8b8d4df1d7ec08102e5cc647b1 244 SMART SM00862 168 243 3.4E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_1620 e8726f8b8d4df1d7ec08102e5cc647b1 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 169 243 1.4E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_1620 e8726f8b8d4df1d7ec08102e5cc647b1 244 Gene3D G3DSA:3.40.50.12740 1 155 1.0E-39 T 13-10-2018 Trebr_1620 e8726f8b8d4df1d7ec08102e5cc647b1 244 SUPERFAMILY SSF52172 1 118 4.98E-39 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0416 9698bef2853f634bbb0cd217ef3cb5ce 448 Pfam PF01554 MatE 18 178 5.5E-36 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0416 9698bef2853f634bbb0cd217ef3cb5ce 448 Pfam PF01554 MatE 257 404 4.4E-19 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0416 9698bef2853f634bbb0cd217ef3cb5ce 448 PIRSF PIRSF006603 4 448 1.1E-80 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0416 9698bef2853f634bbb0cd217ef3cb5ce 448 TIGRFAM TIGR00797 matE: MATE efflux family protein 18 412 6.5E-72 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 Pfam PF14698 Argininosuccinate lyase C-terminal 384 450 6.2E-24 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 Gene3D G3DSA:1.10.275.10 45 249 9.7E-178 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00145 Argininosuccinate lyase family signature 162 182 1.7E-59 T 13-10-2018 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00145 Argininosuccinate lyase family signature 213 229 1.7E-59 T 13-10-2018 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00145 Argininosuccinate lyase family signature 330 349 1.7E-59 T 13-10-2018 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00145 Argininosuccinate lyase family signature 121 143 1.7E-59 T 13-10-2018 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00145 Argininosuccinate lyase family signature 251 275 1.7E-59 T 13-10-2018 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00145 Argininosuccinate lyase family signature 295 311 1.7E-59 T 13-10-2018 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 3.3E-28 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00149 Fumarate lyase superfamily signature 122 140 3.3E-28 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00149 Fumarate lyase superfamily signature 167 185 3.3E-28 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 PRINTS PR00149 Fumarate lyase superfamily signature 295 311 3.3E-28 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 TIGRFAM TIGR00838 argH: argininosuccinate lyase 23 473 2.5E-175 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 Gene3D G3DSA:1.20.200.10 139 468 9.7E-178 T 13-10-2018 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 Pfam PF00206 Lyase 26 320 6.0E-70 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 ProSitePatterns PS00163 Fumarate lyases signature. 295 304 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 Hamap MF_00006 Argininosuccinate lyase [argH]. 22 473 40.659 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 SUPERFAMILY SSF48557 23 473 1.88E-138 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 Trebr_0978 7e2bdcc004cbf40229c47c510999f7d3 479 Gene3D G3DSA:1.10.40.30 380 452 9.7E-178 T 13-10-2018 Trebr_0266 10c9a703ba1873a55d0b13eede669c7f 294 Gene3D G3DSA:3.40.50.2300 35 279 4.1E-84 T 13-10-2018 Trebr_0266 10c9a703ba1873a55d0b13eede669c7f 294 Pfam PF13407 Periplasmic binding protein domain 30 279 1.2E-58 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_0266 10c9a703ba1873a55d0b13eede669c7f 294 SUPERFAMILY SSF53822 26 294 2.86E-79 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0266 10c9a703ba1873a55d0b13eede669c7f 294 Gene3D G3DSA:3.40.50.2300 128 261 4.1E-84 T 13-10-2018 Trebr_0652 76db0f1a8129f286f8e702cce5e7e281 165 Gene3D G3DSA:3.40.50.7700 1 160 6.1E-57 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Trebr_0652 76db0f1a8129f286f8e702cce5e7e281 165 PIRSF PIRSF001338 1 160 1.3E-55 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 Trebr_0652 76db0f1a8129f286f8e702cce5e7e281 165 SUPERFAMILY SSF52255 2 157 5.62E-53 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Trebr_0652 76db0f1a8129f286f8e702cce5e7e281 165 Pfam PF00731 AIR carboxylase 4 152 8.6E-57 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Trebr_0652 76db0f1a8129f286f8e702cce5e7e281 165 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 3 159 28.65 T 13-10-2018 IPR033747 Class I PurE Trebr_0652 76db0f1a8129f286f8e702cce5e7e281 165 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 4 154 1.4E-52 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Trebr_0652 76db0f1a8129f286f8e702cce5e7e281 165 SMART SM01001 1 155 7.6E-72 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Trebr_1226 57928ccf7e180631a05feb1d41550754 339 SUPERFAMILY SSF81345 7 333 1.05E-74 T 13-10-2018 IPR037294 ABC transporter, BtuC-like Trebr_1226 57928ccf7e180631a05feb1d41550754 339 Pfam PF01032 FecCD transport family 23 333 5.6E-84 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Trebr_1226 57928ccf7e180631a05feb1d41550754 339 Gene3D G3DSA:1.10.3470.10 6 337 2.6E-100 T 13-10-2018 IPR037294 ABC transporter, BtuC-like Trebr_1396 54069fad90201b2abd4923f932f64f5c 213 Pfam PF13023 HD domain 33 195 9.7E-47 T 13-10-2018 IPR006674 HD domain Trebr_1396 54069fad90201b2abd4923f932f64f5c 213 Gene3D G3DSA:1.10.3210.10 18 213 3.6E-51 T 13-10-2018 Trebr_1396 54069fad90201b2abd4923f932f64f5c 213 SUPERFAMILY SSF109604 25 202 4.87E-37 T 13-10-2018 Trebr_1014 e07441ad102eecaf15a76d1ee4208c7e 287 Pfam PF04439 Streptomycin adenylyltransferase 1 276 2.9E-115 T 13-10-2018 IPR007530 Aminoglycoside 6-adenylyltransferase Trebr_1014 e07441ad102eecaf15a76d1ee4208c7e 287 SUPERFAMILY SSF81301 1 129 1.63E-43 T 13-10-2018 Trebr_1014 e07441ad102eecaf15a76d1ee4208c7e 287 SUPERFAMILY SSF81631 134 278 1.1E-52 T 13-10-2018 Trebr_1014 e07441ad102eecaf15a76d1ee4208c7e 287 Gene3D G3DSA:1.20.120.330 146 285 3.7E-41 T 13-10-2018 Trebr_1014 e07441ad102eecaf15a76d1ee4208c7e 287 Gene3D G3DSA:3.30.460.10 9 145 1.0E-48 T 13-10-2018 Trebr_1014 e07441ad102eecaf15a76d1ee4208c7e 287 PIRSF PIRSF000812 1 281 1.4E-93 T 13-10-2018 IPR007530 Aminoglycoside 6-adenylyltransferase Trebr_2372 1b34473a0817020005d6328438e6ee2e 301 Gene3D G3DSA:3.40.50.300 1 289 3.7E-35 T 13-10-2018 Trebr_2372 1b34473a0817020005d6328438e6ee2e 301 Pfam PF00005 ABC transporter 44 199 1.8E-14 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2372 1b34473a0817020005d6328438e6ee2e 301 SMART SM00382 41 257 6.4E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2372 1b34473a0817020005d6328438e6ee2e 301 SUPERFAMILY SSF52540 29 260 1.78E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 Pfam PF00005 ABC transporter 342 480 1.9E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 Pfam PF12848 ABC transporter 227 300 3.5E-8 T 13-10-2018 IPR032781 ABC-transporter extension domain Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 Gene3D G3DSA:1.10.287.380 574 652 3.8E-9 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 SMART SM00382 349 525 3.3E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 SMART SM00382 28 242 7.5E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 Gene3D G3DSA:3.40.50.300 4 282 8.0E-65 T 13-10-2018 Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 SUPERFAMILY SSF52540 4 242 9.94E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 Gene3D G3DSA:3.40.50.300 287 562 7.2E-54 T 13-10-2018 Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 Pfam PF16326 ABC transporter C-terminal domain 584 647 6.0E-18 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 Pfam PF00005 ABC transporter 21 188 4.6E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0461 84d58b4892f20217f091c9670714cf5d 653 SUPERFAMILY SSF52540 312 524 5.72E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0448 8830dedda543404ed81e20a7f9f68040 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 169 1.5E-5 T 13-10-2018 Trebr_0448 8830dedda543404ed81e20a7f9f68040 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 82 184 2.4E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_0448 8830dedda543404ed81e20a7f9f68040 225 Gene3D G3DSA:3.40.50.1000 5 188 7.9E-25 T 13-10-2018 IPR023214 HAD superfamily Trebr_0448 8830dedda543404ed81e20a7f9f68040 225 SUPERFAMILY SSF56784 1 220 8.1E-24 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_0448 8830dedda543404ed81e20a7f9f68040 225 Gene3D G3DSA:1.10.150.450 15 84 7.9E-25 T 13-10-2018 Trebr_2500 e26d4b9b9b513b8766515142880de07e 382 Gene3D G3DSA:3.40.50.1970 2 182 2.5E-23 T 13-10-2018 Trebr_2500 e26d4b9b9b513b8766515142880de07e 382 SUPERFAMILY SSF56796 5 381 9.03E-55 T 13-10-2018 Trebr_2500 e26d4b9b9b513b8766515142880de07e 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 374 9.3E-51 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Trebr_2500 e26d4b9b9b513b8766515142880de07e 382 Gene3D G3DSA:1.20.1090.10 185 382 1.7E-27 T 13-10-2018 Trebr_0464 0faa93b0fb5ca6203e9d4252f4b56e80 345 Gene3D G3DSA:3.30.70.120 256 329 4.3E-12 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Trebr_0464 0faa93b0fb5ca6203e9d4252f4b56e80 345 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 284 337 6.7E-14 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 Trebr_0464 0faa93b0fb5ca6203e9d4252f4b56e80 345 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 71 277 2.3E-47 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 Gene3D G3DSA:3.30.70.120 457 575 3.7E-41 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 Gene3D G3DSA:1.10.3430.10 2 425 2.8E-131 T 13-10-2018 IPR029020 Ammonium/urea transporter Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 Pfam PF00909 Ammonium Transporter Family 21 412 2.3E-117 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 SUPERFAMILY SSF54913 466 578 8.58E-36 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 SMART SM00938 467 568 1.7E-43 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 TIGRFAM TIGR00836 amt: ammonium transporter 21 412 7.9E-122 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 PRINTS PR00340 P-II protein signature 465 480 1.7E-26 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 PRINTS PR00340 P-II protein signature 486 504 1.7E-26 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 PRINTS PR00340 P-II protein signature 546 566 1.7E-26 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 PRINTS PR00340 P-II protein signature 515 538 1.7E-26 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 Pfam PF00543 Nitrogen regulatory protein P-II 467 568 1.6E-30 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 SUPERFAMILY SSF111352 21 397 1.15E-104 T 13-10-2018 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 ProSitePatterns PS01219 Ammonium transporters signature. 165 190 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Trebr_0399 5ceb07a5eefb08340deacbad589d9d64 580 ProSitePatterns PS00638 P-II protein C-terminal region signature. 546 559 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Trebr_1065 c500ad5d22149ba50542586df2417ed5 383 SUPERFAMILY SSF50156 313 376 1.03E-7 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_1065 c500ad5d22149ba50542586df2417ed5 383 Gene3D G3DSA:2.40.70.10 154 287 1.3E-5 T 13-10-2018 IPR021109 Aspartic peptidase domain superfamily Trebr_1065 c500ad5d22149ba50542586df2417ed5 383 Gene3D G3DSA:2.30.42.10 312 379 4.2E-7 T 13-10-2018 Trebr_0091 b81c3b220fcdd4dae6b92d14eb01ce51 536 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 239 473 1.4E-27 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 Trebr_0091 b81c3b220fcdd4dae6b92d14eb01ce51 536 SUPERFAMILY SSF51735 12 315 2.2E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0091 b81c3b220fcdd4dae6b92d14eb01ce51 536 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 38 201 2.5E-15 T 13-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 Trebr_0091 b81c3b220fcdd4dae6b92d14eb01ce51 536 Gene3D G3DSA:1.10.1040.10 318 536 6.4E-54 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Trebr_0091 b81c3b220fcdd4dae6b92d14eb01ce51 536 Gene3D G3DSA:3.40.50.720 16 314 1.6E-80 T 13-10-2018 Trebr_0091 b81c3b220fcdd4dae6b92d14eb01ce51 536 SUPERFAMILY SSF48179 320 508 1.5E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Trebr_0286 d1ffc6760cc12ca58b3999aee06ddec5 370 Pfam PF13450 NAD(P)-binding Rossmann-like domain 7 73 1.1E-18 T 13-10-2018 Trebr_0286 d1ffc6760cc12ca58b3999aee06ddec5 370 Gene3D G3DSA:3.40.50.720 2 95 3.1E-30 T 13-10-2018 Trebr_0286 d1ffc6760cc12ca58b3999aee06ddec5 370 SUPERFAMILY SSF51971 1 362 1.24E-47 T 13-10-2018 Trebr_0286 d1ffc6760cc12ca58b3999aee06ddec5 370 Gene3D G3DSA:3.40.50.720 303 370 3.0E-15 T 13-10-2018 Trebr_0286 d1ffc6760cc12ca58b3999aee06ddec5 370 Gene3D G3DSA:3.40.50.720 132 265 1.9E-21 T 13-10-2018 Trebr_0286 d1ffc6760cc12ca58b3999aee06ddec5 370 SUPERFAMILY SSF54373 246 318 1.14E-21 T 13-10-2018 Trebr_0286 d1ffc6760cc12ca58b3999aee06ddec5 370 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 2 367 1.5E-123 T 13-10-2018 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 Trebr_0286 d1ffc6760cc12ca58b3999aee06ddec5 370 Pfam PF03275 UDP-galactopyranose mutase 148 351 2.2E-78 T 13-10-2018 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 Gene3D G3DSA:3.30.54.20 519 572 2.8E-52 T 13-10-2018 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 SUPERFAMILY SSF101353 247 446 5.36E-60 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 Gene3D G3DSA:3.30.930.10 1 243 2.0E-97 T 13-10-2018 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 595 97.998 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 SUPERFAMILY SSF55186 455 593 1.57E-46 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 PRINTS PR00980 Alanyl-tRNA synthetase signature 277 293 2.1E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 PRINTS PR00980 Alanyl-tRNA synthetase signature 303 316 2.1E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 PRINTS PR00980 Alanyl-tRNA synthetase signature 70 81 2.1E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 PRINTS PR00980 Alanyl-tRNA synthetase signature 200 211 2.1E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 PRINTS PR00980 Alanyl-tRNA synthetase signature 227 240 2.1E-25 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 548 590 2.7E-17 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 SMART SM00863 548 591 7.8E-18 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 Pfam PF01411 tRNA synthetases class II (A) 5 454 7.6E-144 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 Gene3D G3DSA:3.30.980.10 457 592 2.8E-52 T 13-10-2018 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 SUPERFAMILY SSF55681 2 246 1.74E-77 T 13-10-2018 Trebr_0789 0e6a2ddd8757a76e882c23f7e044a215 595 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 442 1.4E-143 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Trebr_1769 903581f5aee718b20275e9ca17537f53 489 Gene3D G3DSA:3.40.50.620 28 267 1.5E-50 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1769 903581f5aee718b20275e9ca17537f53 489 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 40 237 3.7E-38 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Trebr_1769 903581f5aee718b20275e9ca17537f53 489 SUPERFAMILY SSF52402 31 264 1.47E-37 T 13-10-2018 Trebr_1769 903581f5aee718b20275e9ca17537f53 489 SUPERFAMILY SSF56037 402 449 4.18E-6 T 13-10-2018 Trebr_1769 903581f5aee718b20275e9ca17537f53 489 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 32 339 19.416 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Trebr_1769 903581f5aee718b20275e9ca17537f53 489 Pfam PF01171 PP-loop family 39 234 2.1E-38 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Trebr_2013 fa9c4c216bfe683dfea8c290bde700a7 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 269 5.7E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2013 fa9c4c216bfe683dfea8c290bde700a7 281 Gene3D G3DSA:1.10.3720.10 46 279 1.7E-49 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2013 fa9c4c216bfe683dfea8c290bde700a7 281 SUPERFAMILY SSF161098 50 268 6.54E-46 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0032 3d7e3c16faf3a4714fdb04eeb1e65243 171 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 10 147 4.2E-37 T 13-10-2018 IPR026353 Hypoxanthine-DNA glycosylase Trebr_0032 3d7e3c16faf3a4714fdb04eeb1e65243 171 SMART SM00986 11 161 0.0094 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Trebr_0032 3d7e3c16faf3a4714fdb04eeb1e65243 171 SMART SM00987 11 161 0.0094 T 13-10-2018 Trebr_0032 3d7e3c16faf3a4714fdb04eeb1e65243 171 SUPERFAMILY SSF52141 10 161 1.83E-25 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Trebr_0032 3d7e3c16faf3a4714fdb04eeb1e65243 171 Pfam PF03167 Uracil DNA glycosylase superfamily 17 148 1.3E-5 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Trebr_0032 3d7e3c16faf3a4714fdb04eeb1e65243 171 Gene3D G3DSA:3.40.470.10 5 165 1.5E-45 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Trebr_0444 a4463499fe31b62800d725664509b687 352 SUPERFAMILY SSF51735 1 306 1.22E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0444 a4463499fe31b62800d725664509b687 352 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 209 3.9E-10 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Trebr_0444 a4463499fe31b62800d725664509b687 352 Gene3D G3DSA:3.40.50.720 1 310 4.7E-35 T 13-10-2018 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 SUPERFAMILY SSF53671 10 316 1.75E-98 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 Gene3D G3DSA:3.40.50.1370 143 312 1.1E-112 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 159 314 2.2E-54 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 13 153 6.3E-46 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 Gene3D G3DSA:3.40.50.1370 14 142 1.1E-112 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 281 304 7.2E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 140 151 7.2E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 58 77 7.2E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 278 7.2E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 13 316 7.5E-125 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 89 102 1.5E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 295 306 1.5E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 129 143 1.5E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 56 70 1.5E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 232 242 1.5E-31 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 58 65 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_1537 bc8a0ba073327b4f7585f9b8ba8517b5 316 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 12 316 72.227 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Trebr_0665 3cbdef03d140e90a2ae485e59848c213 129 SUPERFAMILY SSF46785 1 82 8.94E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0665 3cbdef03d140e90a2ae485e59848c213 129 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 5.1E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_0665 3cbdef03d140e90a2ae485e59848c213 129 Gene3D G3DSA:1.10.10.10 6 125 7.4E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0665 3cbdef03d140e90a2ae485e59848c213 129 SMART SM00345 13 72 3.2E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 PIRSF PIRSF000485 17 482 4.0E-174 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 Pfam PF00156 Phosphoribosyl transferase domain 301 399 1.4E-12 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 Gene3D G3DSA:3.40.50.2020 286 450 9.1E-158 T 13-10-2018 Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 20 470 46.526 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 21 471 1.7E-160 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 Pfam PF13537 Glutamine amidotransferase domain 109 225 2.2E-23 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 SUPERFAMILY SSF56235 21 252 1.63E-70 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 SUPERFAMILY SSF53271 262 477 1.44E-71 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like Trebr_0654 4f9252bfb914088c986a4c94e9aa009e 483 Gene3D G3DSA:3.60.20.10 21 472 9.1E-158 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0968 f526a2148c17b8860afcdad4c090f7b9 158 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 140 1.0E-23 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Trebr_0968 f526a2148c17b8860afcdad4c090f7b9 158 Pfam PF02050 Flagellar FliJ protein 20 139 5.6E-11 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Trebr_1129 8b8cc3e276bfbf639814e4cf7f524a6b 376 Pfam PF01548 Transposase 7 158 2.3E-15 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Trebr_1129 8b8cc3e276bfbf639814e4cf7f524a6b 376 Pfam PF02371 Transposase IS116/IS110/IS902 family 232 306 1.4E-20 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Trebr_0776 41146419cbd14366a9eab90d8d6ed15a 219 Gene3D G3DSA:3.40.50.10420 5 217 1.9E-47 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily Trebr_0776 41146419cbd14366a9eab90d8d6ed15a 219 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 16 210 8.4E-36 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Trebr_0776 41146419cbd14366a9eab90d8d6ed15a 219 SUPERFAMILY SSF100950 15 216 8.51E-38 T 13-10-2018 IPR037171 NagB/RpiA transferase-like Trebr_0776 41146419cbd14366a9eab90d8d6ed15a 219 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 16 210 2.4E-33 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Trebr_0776 41146419cbd14366a9eab90d8d6ed15a 219 PIRSF PIRSF006806 11 212 3.3E-35 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 113 30.497 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 Gene3D G3DSA:2.30.30.790 5 117 1.5E-14 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 112 4.7E-48 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 ProSitePatterns PS01015 Ribosomal protein L19 signature. 85 100 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 PRINTS PR00061 Ribosomal protein L19 signature 33 62 2.1E-39 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 PRINTS PR00061 Ribosomal protein L19 signature 3 32 2.1E-39 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 PRINTS PR00061 Ribosomal protein L19 signature 87 112 2.1E-39 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 PIRSF PIRSF002191 1 123 3.4E-45 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 SUPERFAMILY SSF50104 1 113 1.62E-43 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily Trebr_0906 c4f1370afc39933966c6e03da7e878c5 123 Pfam PF01245 Ribosomal protein L19 3 111 7.3E-46 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2031 b77fd9c40c8b650ecf4111d54b9cd63f 342 SUPERFAMILY SSF46548 229 339 9.94E-12 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_2031 b77fd9c40c8b650ecf4111d54b9cd63f 342 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 316 327 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2031 b77fd9c40c8b650ecf4111d54b9cd63f 342 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 238 249 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2031 b77fd9c40c8b650ecf4111d54b9cd63f 342 Pfam PF17179 4Fe-4S dicluster domain 238 329 1.0E-29 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2025 894def4667fadd369d9c2f50df6d3318 294 Pfam PF16011 Carbohydrate-binding family 9 96 139 9.9E-6 T 13-10-2018 IPR010502 Carbohydrate-binding domain, family 9 GO:0004553|GO:0016052|GO:0030246 MetaCyc: PWY-6717|MetaCyc: PWY-6784 Trebr_2025 894def4667fadd369d9c2f50df6d3318 294 SUPERFAMILY SSF49344 103 244 1.84E-5 T 13-10-2018 Trebr_2025 894def4667fadd369d9c2f50df6d3318 294 Gene3D G3DSA:2.60.40.1190 60 281 2.0E-27 T 13-10-2018 Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 Gene3D G3DSA:3.40.50.300 2 266 7.9E-65 T 13-10-2018 Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 Pfam PF00005 ABC transporter 24 172 3.5E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 ProSitePatterns PS00211 ABC transporters family signature. 436 450 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 Pfam PF00005 ABC transporter 319 464 1.1E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 Gene3D G3DSA:3.40.50.300 299 538 1.6E-59 T 13-10-2018 Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 SMART SM00382 327 512 1.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 SMART SM00382 31 223 8.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 SUPERFAMILY SSF52540 285 523 6.99E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 SUPERFAMILY SSF52540 3 235 1.36E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0546 e10a17c4cf13b2d92d26517849ed40e7 570 Pfam PF12558 ATP-binding cassette cobalt transporter 237 309 9.6E-20 T 13-10-2018 IPR022216 Putative ABC cobalt transporter Trebr_1526 0aee2de3bc40b4d30e2360aae33672d0 357 SUPERFAMILY SSF53271 83 316 7.74E-30 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like Trebr_1526 0aee2de3bc40b4d30e2360aae33672d0 357 Gene3D G3DSA:3.40.50.2020 86 318 5.5E-37 T 13-10-2018 Trebr_1526 0aee2de3bc40b4d30e2360aae33672d0 357 Pfam PF14681 Uracil phosphoribosyltransferase 90 314 2.3E-24 T 13-10-2018 Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 SUPERFAMILY SSF46689 228 278 8.06E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 Gene3D G3DSA:1.10.10.60 171 225 5.9E-11 T 13-10-2018 Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 229 271 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 Pfam PF12833 Helix-turn-helix domain 199 277 2.0E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 SMART SM00342 192 275 6.5E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 Pfam PF02311 AraC-like ligand binding domain 27 145 2.8E-7 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 Gene3D G3DSA:2.60.120.10 13 97 2.0E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 SUPERFAMILY SSF51182 17 88 7.03E-11 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 Gene3D G3DSA:1.10.10.60 226 280 3.4E-16 T 13-10-2018 Trebr_1560 b899e20f9f14be548f6f4dba7f496486 281 SUPERFAMILY SSF46689 178 225 2.11E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 47 204 35.32 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 SUPERFAMILY SSF51316 224 365 4.6E-57 T 13-10-2018 IPR011057 Mss4-like superfamily Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 Gene3D G3DSA:3.30.1060.10 12 210 1.0E-65 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 Pfam PF01625 Peptide methionine sulfoxide reductase 50 199 1.2E-60 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 225 359 3.0E-62 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 Gene3D G3DSA:2.170.150.20 221 367 5.6E-58 T 13-10-2018 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 48 198 6.2E-54 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 Pfam PF01641 SelR domain 231 350 7.3E-47 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 SUPERFAMILY SSF55068 40 201 3.66E-64 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Trebr_1399 cfd1359ef34128aa3a0978bafdf33992 367 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 224 351 35.801 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 417 485 2.1E-29 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 Gene3D G3DSA:1.10.8.60 338 408 3.5E-19 T 13-10-2018 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 16 506 1.3E-150 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 SMART SM00382 205 332 2.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0001 6c83d202381f9162e6201072e8b67071 513 SUPERFAMILY SSF48295 403 508 4.19E-35 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 Gene3D G3DSA:3.30.300.180 4 87 9.4E-8 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily Trebr_0001 6c83d202381f9162e6201072e8b67071 513 SUPERFAMILY SSF52540 172 383 2.04E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0001 6c83d202381f9162e6201072e8b67071 513 Pfam PF00308 Bacterial dnaA protein 173 388 1.0E-86 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Trebr_0001 6c83d202381f9162e6201072e8b67071 513 Gene3D G3DSA:1.10.1750.10 409 510 5.7E-34 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 SMART SM00760 416 485 9.6E-40 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 7 507 30.508 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 303 330 9.0E-46 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Trebr_0001 6c83d202381f9162e6201072e8b67071 513 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 269 283 9.0E-46 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Trebr_0001 6c83d202381f9162e6201072e8b67071 513 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 466 485 9.0E-46 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Trebr_0001 6c83d202381f9162e6201072e8b67071 513 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 206 226 9.0E-46 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Trebr_0001 6c83d202381f9162e6201072e8b67071 513 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 237 251 9.0E-46 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Trebr_0001 6c83d202381f9162e6201072e8b67071 513 ProSitePatterns PS01008 DnaA protein signature. 466 485 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Trebr_0001 6c83d202381f9162e6201072e8b67071 513 Gene3D G3DSA:3.40.50.300 171 337 3.4E-52 T 13-10-2018 Trebr_2230 d76f2802f0ddb093032cf9e0560c2b3d 395 Gene3D G3DSA:3.40.50.2000 234 380 1.1E-15 T 13-10-2018 Trebr_2230 d76f2802f0ddb093032cf9e0560c2b3d 395 Pfam PF13439 Glycosyltransferase Family 4 30 216 5.5E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_2230 d76f2802f0ddb093032cf9e0560c2b3d 395 Pfam PF00534 Glycosyl transferases group 1 224 362 1.3E-13 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_2230 d76f2802f0ddb093032cf9e0560c2b3d 395 SUPERFAMILY SSF53756 18 393 3.14E-49 T 13-10-2018 Trebr_0755 4f216c75f8e24fa6162219f6a04555ba 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 265 1.3E-50 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Trebr_0755 4f216c75f8e24fa6162219f6a04555ba 278 Gene3D G3DSA:3.40.190.10 36 264 2.2E-64 T 13-10-2018 Trebr_0755 4f216c75f8e24fa6162219f6a04555ba 278 SMART SM00062 38 270 2.8E-41 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Trebr_0755 4f216c75f8e24fa6162219f6a04555ba 278 SUPERFAMILY SSF53850 3 265 5.2E-57 T 13-10-2018 Trebr_0755 4f216c75f8e24fa6162219f6a04555ba 278 Gene3D G3DSA:3.40.190.10 129 232 2.2E-64 T 13-10-2018 Trebr_1665 0a30fcaadbd5aeaa23c919fcffa7884b 360 SUPERFAMILY SSF50998 124 350 3.18E-9 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Trebr_0810 89c528513a9416aa5c211377954ed234 446 PIRSF PIRSF000390 32 445 8.1E-105 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_0810 89c528513a9416aa5c211377954ed234 446 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 47 438 3.4E-90 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_0810 89c528513a9416aa5c211377954ed234 446 Gene3D G3DSA:3.40.640.10 5 312 2.0E-91 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0810 89c528513a9416aa5c211377954ed234 446 Gene3D G3DSA:3.90.1150.10 314 443 1.3E-44 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0810 89c528513a9416aa5c211377954ed234 446 SUPERFAMILY SSF53383 36 442 1.06E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0662 0f2df67bdbb54822ec702a8d075b09c8 475 TIGRFAM TIGR03955 rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG 2 475 2.3E-269 T 13-10-2018 IPR024007 [FeFe]-hydrogenase maturation HydG, radical SAM Trebr_0662 0f2df67bdbb54822ec702a8d075b09c8 475 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 275 384 1.3E-24 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Trebr_0662 0f2df67bdbb54822ec702a8d075b09c8 475 SUPERFAMILY SSF102114 46 384 1.96E-45 T 13-10-2018 Trebr_0662 0f2df67bdbb54822ec702a8d075b09c8 475 SMART SM00876 275 386 9.9E-24 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Trebr_0662 0f2df67bdbb54822ec702a8d075b09c8 475 Pfam PF04055 Radical SAM superfamily 93 240 1.1E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0662 0f2df67bdbb54822ec702a8d075b09c8 475 Gene3D G3DSA:3.20.20.70 13 398 1.7E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0049 38a1ef1ede2f888dd48ae4143f18f242 109 SMART SM00530 10 65 5.3E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0049 38a1ef1ede2f888dd48ae4143f18f242 109 SUPERFAMILY SSF47413 3 67 1.83E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0049 38a1ef1ede2f888dd48ae4143f18f242 109 Pfam PF01381 Helix-turn-helix 11 64 2.3E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0049 38a1ef1ede2f888dd48ae4143f18f242 109 Gene3D G3DSA:1.10.260.40 1 69 9.0E-12 T 13-10-2018 Trebr_1372 e1dae8472f3da0e6bb53ad02a3b21a45 260 SUPERFAMILY SSF63999 2 127 8.5E-23 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Trebr_1372 e1dae8472f3da0e6bb53ad02a3b21a45 260 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 26 130 1.4E-14 T 13-10-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Trebr_1372 e1dae8472f3da0e6bb53ad02a3b21a45 260 Gene3D G3DSA:3.40.50.10240 2 233 1.4E-30 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Trebr_1372 e1dae8472f3da0e6bb53ad02a3b21a45 260 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 4 215 7.7E-24 T 13-10-2018 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Trebr_1507 e587835c58f969d5f8b761d8308097f6 156 SUPERFAMILY SSF54593 6 117 3.71E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Trebr_1507 e587835c58f969d5f8b761d8308097f6 156 Pfam PF12681 Glyoxalase-like domain 5 119 2.6E-34 T 13-10-2018 IPR025870 Glyoxalase-like domain Trebr_1507 e587835c58f969d5f8b761d8308097f6 156 Gene3D G3DSA:3.10.180.10 1 154 3.4E-53 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Trebr_2421 4bf95af4215ec5b6410bf3f885947a30 262 Gene3D G3DSA:3.30.1330.30 1 84 1.0E-5 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like Trebr_2421 4bf95af4215ec5b6410bf3f885947a30 262 SUPERFAMILY SSF55315 4 84 3.77E-6 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like Trebr_2421 4bf95af4215ec5b6410bf3f885947a30 262 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 4 260 8.9E-54 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 Trebr_2421 4bf95af4215ec5b6410bf3f885947a30 262 Pfam PF00588 SpoU rRNA Methylase family 113 255 5.2E-40 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Trebr_2421 4bf95af4215ec5b6410bf3f885947a30 262 Gene3D G3DSA:3.40.1280.10 107 262 7.7E-49 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Trebr_2421 4bf95af4215ec5b6410bf3f885947a30 262 SUPERFAMILY SSF75217 107 261 1.31E-44 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases Trebr_1348 901d9a8ed255e1c676d8a34ea20d70d4 296 Pfam PF01988 VIT family 143 198 1.0E-8 T 13-10-2018 IPR008217 Ccc1 family Trebr_1348 901d9a8ed255e1c676d8a34ea20d70d4 296 Gene3D G3DSA:1.10.620.20 1 87 1.7E-5 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 Trebr_1348 901d9a8ed255e1c676d8a34ea20d70d4 296 Pfam PF02915 Rubrerythrin 15 123 8.6E-5 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Trebr_1348 901d9a8ed255e1c676d8a34ea20d70d4 296 SUPERFAMILY SSF47240 8 134 4.06E-16 T 13-10-2018 IPR009078 Ferritin-like superfamily Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 Hamap MF_00082 Acetylglutamate kinase [argB]. 24 282 49.644 T 13-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 SUPERFAMILY SSF53633 3 288 4.19E-89 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 Gene3D G3DSA:3.40.1160.10 1 288 2.7E-98 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 TIGRFAM TIGR00761 argB: acetylglutamate kinase 26 264 1.8E-75 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 Pfam PF00696 Amino acid kinase family 25 266 8.4E-46 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 PRINTS PR00474 Glutamate 5-kinase family signature 186 213 5.0E-8 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 PRINTS PR00474 Glutamate 5-kinase family signature 239 259 5.0E-8 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 PRINTS PR00474 Glutamate 5-kinase family signature 56 70 5.0E-8 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 PRINTS PR00474 Glutamate 5-kinase family signature 152 173 5.0E-8 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Trebr_1080 bb9aedba6348ea03833f12c63bfd1c5a 288 PIRSF PIRSF000728 10 288 5.3E-110 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Trebr_2142 226c4c81dd27676ab3b8d4c7a9f79100 161 SUPERFAMILY SSF54909 62 145 7.64E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel Trebr_2142 226c4c81dd27676ab3b8d4c7a9f79100 161 SMART SM00344 2 109 6.0E-5 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Trebr_2142 226c4c81dd27676ab3b8d4c7a9f79100 161 Gene3D G3DSA:3.30.70.920 51 148 9.4E-20 T 13-10-2018 Trebr_2142 226c4c81dd27676ab3b8d4c7a9f79100 161 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 43 5.0E-7 T 13-10-2018 Trebr_2142 226c4c81dd27676ab3b8d4c7a9f79100 161 Pfam PF01037 Lrp/AsnC ligand binding domain 68 140 1.4E-16 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Trebr_2142 226c4c81dd27676ab3b8d4c7a9f79100 161 SUPERFAMILY SSF46785 3 55 1.56E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2142 226c4c81dd27676ab3b8d4c7a9f79100 161 Gene3D G3DSA:1.10.10.10 2 50 2.0E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1100 55e4d32becb90943765a71269dc48fd5 297 SMART SM00892 87 283 7.0E-65 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 Trebr_1100 55e4d32becb90943765a71269dc48fd5 297 Pfam PF01223 DNA/RNA non-specific endonuclease 81 282 1.6E-57 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 Trebr_1100 55e4d32becb90943765a71269dc48fd5 297 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 146 154 - T 13-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 Trebr_1100 55e4d32becb90943765a71269dc48fd5 297 SUPERFAMILY SSF54060 83 292 4.77E-67 T 13-10-2018 Trebr_1100 55e4d32becb90943765a71269dc48fd5 297 SMART SM00477 88 283 1.3E-59 T 13-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 Trebr_1100 55e4d32becb90943765a71269dc48fd5 297 Gene3D G3DSA:3.40.570.10 68 295 1.5E-71 T 13-10-2018 Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 Gene3D G3DSA:3.90.1150.10 254 604 4.2E-101 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 253 603 1.9E-116 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 Gene3D G3DSA:3.40.640.10 263 508 4.2E-101 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 253 614 114.177 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 Gene3D G3DSA:3.90.550.10 3 237 3.1E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 Pfam PF00266 Aminotransferase class-V 268 534 4.0E-31 T 13-10-2018 IPR000192 Aminotransferase class V domain Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 SUPERFAMILY SSF53448 1 271 6.26E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 SUPERFAMILY SSF53383 253 610 5.27E-74 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0277 2a0e6a140cff86c977edd74129825d62 614 Pfam PF12804 MobA-like NTP transferase domain 5 109 5.7E-10 T 13-10-2018 IPR025877 MobA-like NTP transferase Trebr_0170 acd0c4511fcb8eb0064238133f0fd63d 384 Pfam PF13353 4Fe-4S single cluster domain 69 147 6.8E-5 T 13-10-2018 Trebr_0170 acd0c4511fcb8eb0064238133f0fd63d 384 Gene3D G3DSA:3.20.20.70 61 349 3.3E-27 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0170 acd0c4511fcb8eb0064238133f0fd63d 384 Pfam PF04055 Radical SAM superfamily 66 230 3.8E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0170 acd0c4511fcb8eb0064238133f0fd63d 384 SUPERFAMILY SSF102114 57 368 6.28E-38 T 13-10-2018 Trebr_1784 258d85da3e8e29a6581496de789331c0 85 Gene3D G3DSA:3.30.2310.20 1 85 7.2E-25 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Trebr_1784 258d85da3e8e29a6581496de789331c0 85 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 2 83 2.5E-14 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Trebr_1784 258d85da3e8e29a6581496de789331c0 85 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 84 1.5E-14 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Trebr_1784 258d85da3e8e29a6581496de789331c0 85 SUPERFAMILY SSF143011 2 82 1.7E-21 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Trebr_1452 6feab435011fae865684a4a1adffe358 581 Gene3D G3DSA:1.20.1560.10 2 322 1.1E-28 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1452 6feab435011fae865684a4a1adffe358 581 SMART SM00382 361 547 1.3E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1452 6feab435011fae865684a4a1adffe358 581 Pfam PF00005 ABC transporter 352 500 1.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1452 6feab435011fae865684a4a1adffe358 581 SUPERFAMILY SSF90123 6 316 1.2E-36 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1452 6feab435011fae865684a4a1adffe358 581 Gene3D G3DSA:3.40.50.300 328 578 4.9E-76 T 13-10-2018 Trebr_1452 6feab435011fae865684a4a1adffe358 581 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1452 6feab435011fae865684a4a1adffe358 581 Pfam PF00664 ABC transporter transmembrane region 21 265 8.6E-16 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_1452 6feab435011fae865684a4a1adffe358 581 SUPERFAMILY SSF52540 333 569 3.13E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0208 dc8af22a13ff3be1337a7683a35a46e0 177 Gene3D G3DSA:3.40.50.360 15 175 1.3E-53 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0208 dc8af22a13ff3be1337a7683a35a46e0 177 Pfam PF12682 Flavodoxin 21 159 5.5E-47 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Trebr_0208 dc8af22a13ff3be1337a7683a35a46e0 177 SUPERFAMILY SSF52218 21 137 7.21E-20 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_1086 8b5866cc0397fae82f26ceefac770bc3 322 Pfam PF01081 KDPG and KHG aldolase 7 199 1.2E-72 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Trebr_1086 8b5866cc0397fae82f26ceefac770bc3 322 Gene3D G3DSA:3.20.20.70 1 209 7.7E-79 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1086 8b5866cc0397fae82f26ceefac770bc3 322 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 13-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Trebr_1086 8b5866cc0397fae82f26ceefac770bc3 322 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 8 205 5.1E-80 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Trebr_1086 8b5866cc0397fae82f26ceefac770bc3 322 SUPERFAMILY SSF51569 7 206 2.93E-68 T 13-10-2018 Trebr_1086 8b5866cc0397fae82f26ceefac770bc3 322 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 13-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Trebr_0189 8c8294cd51c21c2815939c5970439e07 293 SUPERFAMILY SSF161098 25 293 2.8E-47 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0189 8c8294cd51c21c2815939c5970439e07 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 282 1.9E-9 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0189 8c8294cd51c21c2815939c5970439e07 293 Gene3D G3DSA:1.10.3720.10 16 284 7.1E-48 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1748 dcef7249f63c0d29a7cc6a64503c7898 56 Pfam PF13187 4Fe-4S dicluster domain 8 53 5.6E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_1748 dcef7249f63c0d29a7cc6a64503c7898 56 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_1748 dcef7249f63c0d29a7cc6a64503c7898 56 SUPERFAMILY SSF54862 1 55 3.96E-18 T 13-10-2018 Trebr_1748 dcef7249f63c0d29a7cc6a64503c7898 56 Gene3D G3DSA:3.30.70.20 2 56 8.7E-19 T 13-10-2018 Trebr_1748 dcef7249f63c0d29a7cc6a64503c7898 56 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 38 49 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_1516 5f21cc94b5c03d132ded7fdd14c1c067 154 Hamap MF_00023 SsrA-binding protein [smpB]. 1 154 66.56 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 Trebr_1516 5f21cc94b5c03d132ded7fdd14c1c067 154 Pfam PF01668 SmpB protein 8 149 9.7E-60 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 Trebr_1516 5f21cc94b5c03d132ded7fdd14c1c067 154 Gene3D G3DSA:2.40.280.10 2 128 1.0E-49 T 13-10-2018 IPR023620 Small protein B Trebr_1516 5f21cc94b5c03d132ded7fdd14c1c067 154 ProSitePatterns PS01317 SsrA-binding protein. 26 38 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site Trebr_1516 5f21cc94b5c03d132ded7fdd14c1c067 154 TIGRFAM TIGR00086 smpB: SsrA-binding protein 8 148 7.8E-59 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 Trebr_1516 5f21cc94b5c03d132ded7fdd14c1c067 154 SUPERFAMILY SSF74982 3 131 1.7E-49 T 13-10-2018 IPR023620 Small protein B Trebr_1516 5f21cc94b5c03d132ded7fdd14c1c067 154 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 8 131 8.0E-50 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 Trebr_1879 75e93ff5cd8ef94e7496dcb3b10e74a6 368 Pfam PF13439 Glycosyltransferase Family 4 20 174 1.5E-7 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_1879 75e93ff5cd8ef94e7496dcb3b10e74a6 368 Gene3D G3DSA:3.40.50.2000 1 178 6.3E-9 T 13-10-2018 Trebr_1879 75e93ff5cd8ef94e7496dcb3b10e74a6 368 Gene3D G3DSA:3.40.50.2000 188 342 1.3E-8 T 13-10-2018 Trebr_1879 75e93ff5cd8ef94e7496dcb3b10e74a6 368 Pfam PF13692 Glycosyl transferases group 1 197 327 1.2E-14 T 13-10-2018 Trebr_1879 75e93ff5cd8ef94e7496dcb3b10e74a6 368 SUPERFAMILY SSF53756 3 329 2.9E-21 T 13-10-2018 Trebr_1960 55462f9817f346e24ec84b11e7bfbee2 382 SUPERFAMILY SSF55920 156 376 6.28E-52 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like Trebr_1960 55462f9817f346e24ec84b11e7bfbee2 382 PRINTS PR00599 Methionine aminopeptidase-1 signature 307 319 7.2E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1960 55462f9817f346e24ec84b11e7bfbee2 382 PRINTS PR00599 Methionine aminopeptidase-1 signature 336 348 7.2E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1960 55462f9817f346e24ec84b11e7bfbee2 382 PRINTS PR00599 Methionine aminopeptidase-1 signature 238 254 7.2E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Trebr_1960 55462f9817f346e24ec84b11e7bfbee2 382 Pfam PF00557 Metallopeptidase family M24 162 368 4.1E-41 T 13-10-2018 IPR000994 Peptidase M24 Trebr_1960 55462f9817f346e24ec84b11e7bfbee2 382 Gene3D G3DSA:3.90.230.10 154 381 1.5E-55 T 13-10-2018 Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 174 368 1.1E-71 T 13-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 Pfam PF02926 THUMP domain 61 163 3.7E-13 T 13-10-2018 IPR004114 THUMP domain GO:0003723 Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 SUPERFAMILY SSF52402 173 373 3.53E-41 T 13-10-2018 Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 Gene3D G3DSA:3.40.50.620 174 395 3.3E-64 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 8 370 8.8E-100 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 SUPERFAMILY SSF143437 4 172 6.45E-32 T 13-10-2018 Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 398 117.082 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 SMART SM00981 74 164 4.0E-16 T 13-10-2018 IPR004114 THUMP domain GO:0003723 Trebr_0971 fb4348fa579d83b775ba81f3eae653e4 398 Gene3D G3DSA:3.30.2130.30 1 173 2.5E-40 T 13-10-2018 Trebr_0822 d62c62e47ccf706086f5c9ca178917d3 283 SUPERFAMILY SSF53448 6 251 5.63E-35 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0822 d62c62e47ccf706086f5c9ca178917d3 283 Pfam PF00535 Glycosyl transferase family 2 10 144 3.6E-7 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0822 d62c62e47ccf706086f5c9ca178917d3 283 Gene3D G3DSA:3.90.550.10 3 239 2.1E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0724 2329ebc0e1887fc0113626e6300613ff 198 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 5 198 25.749 T 13-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 Trebr_0724 2329ebc0e1887fc0113626e6300613ff 198 SUPERFAMILY SSF53335 20 197 3.87E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0724 2329ebc0e1887fc0113626e6300613ff 198 Pfam PF01728 FtsJ-like methyltransferase 21 196 1.5E-44 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Trebr_0724 2329ebc0e1887fc0113626e6300613ff 198 Gene3D G3DSA:3.40.50.150 17 198 1.1E-46 T 13-10-2018 Trebr_0724 2329ebc0e1887fc0113626e6300613ff 198 PIRSF PIRSF005461 1 198 4.1E-61 T 13-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 Trebr_1364 711df67fc36bb25158ac903c019af173 345 Gene3D G3DSA:1.10.8.1150 42 112 2.3E-14 T 13-10-2018 Trebr_1364 711df67fc36bb25158ac903c019af173 345 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 10 341 29.628 T 13-10-2018 IPR003770 Endolytic murein transglycosylase Trebr_1364 711df67fc36bb25158ac903c019af173 345 Pfam PF02618 YceG-like family 47 333 9.3E-70 T 13-10-2018 IPR003770 Endolytic murein transglycosylase Trebr_1364 711df67fc36bb25158ac903c019af173 345 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 7 341 2.3E-71 T 13-10-2018 IPR003770 Endolytic murein transglycosylase Trebr_2225 c43d988be26ea4e9fd981acc27cddc44 325 Gene3D G3DSA:3.90.25.10 169 315 7.6E-97 T 13-10-2018 Trebr_2225 c43d988be26ea4e9fd981acc27cddc44 325 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 234 2.3E-71 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Trebr_2225 c43d988be26ea4e9fd981acc27cddc44 325 Gene3D G3DSA:3.40.50.720 7 309 7.6E-97 T 13-10-2018 Trebr_2225 c43d988be26ea4e9fd981acc27cddc44 325 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 4 320 44.269 T 13-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 Trebr_2225 c43d988be26ea4e9fd981acc27cddc44 325 SUPERFAMILY SSF51735 2 319 1.14E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1580 31d8cc5953fe17d702245de844d020cc 388 Pfam PF00271 Helicase conserved C-terminal domain 232 341 3.4E-24 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1580 31d8cc5953fe17d702245de844d020cc 388 Gene3D G3DSA:3.40.50.300 219 374 6.8E-36 T 13-10-2018 Trebr_1580 31d8cc5953fe17d702245de844d020cc 388 Gene3D G3DSA:3.40.50.300 2 201 1.6E-53 T 13-10-2018 Trebr_1580 31d8cc5953fe17d702245de844d020cc 388 SMART SM00487 23 210 1.0E-32 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_1580 31d8cc5953fe17d702245de844d020cc 388 Pfam PF00270 DEAD/DEAH box helicase 28 190 1.1E-34 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_1580 31d8cc5953fe17d702245de844d020cc 388 SUPERFAMILY SSF52540 72 360 7.04E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1580 31d8cc5953fe17d702245de844d020cc 388 SMART SM00490 260 341 4.2E-26 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1559 eb5ca2e96481f1d4ba2da22d1c318127 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 287 1.6E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1559 eb5ca2e96481f1d4ba2da22d1c318127 303 SUPERFAMILY SSF161098 59 287 9.42E-50 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1559 eb5ca2e96481f1d4ba2da22d1c318127 303 Gene3D G3DSA:1.10.3720.10 55 303 2.5E-64 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2042 854d7f17ff3ce2eee864c3d0b21e773f 429 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 335 355 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Trebr_2042 854d7f17ff3ce2eee864c3d0b21e773f 429 Pfam PF00860 Permease family 17 385 1.7E-96 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Trebr_2042 854d7f17ff3ce2eee864c3d0b21e773f 429 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 12 416 1.1E-116 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Trebr_0346 a9360e1256e3f0f6c6eca84752239971 264 Pfam PF00924 Mechanosensitive ion channel 56 253 2.4E-50 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Trebr_0346 a9360e1256e3f0f6c6eca84752239971 264 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 128 162 - T 13-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 Trebr_0346 a9360e1256e3f0f6c6eca84752239971 264 SUPERFAMILY SSF50182 100 164 8.83E-16 T 13-10-2018 IPR010920 LSM domain superfamily Trebr_0346 a9360e1256e3f0f6c6eca84752239971 264 SUPERFAMILY SSF82861 17 97 3.01E-13 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Trebr_0346 a9360e1256e3f0f6c6eca84752239971 264 Gene3D G3DSA:2.30.30.60 115 162 5.6E-14 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Trebr_0346 a9360e1256e3f0f6c6eca84752239971 264 SUPERFAMILY SSF82689 167 263 5.23E-28 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Trebr_0346 a9360e1256e3f0f6c6eca84752239971 264 Gene3D G3DSA:3.30.70.100 166 258 4.7E-22 T 13-10-2018 Trebr_2443 68fdebb7166153eec86c7c482f820186 798 SMART SM00487 169 388 1.2E-24 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_2443 68fdebb7166153eec86c7c482f820186 798 Gene3D G3DSA:3.40.50.300 371 595 2.2E-47 T 13-10-2018 Trebr_2443 68fdebb7166153eec86c7c482f820186 798 Gene3D G3DSA:3.90.1570.30 2 150 1.2E-42 T 13-10-2018 Trebr_2443 68fdebb7166153eec86c7c482f820186 798 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 46 137 1.3E-5 T 13-10-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain Trebr_2443 68fdebb7166153eec86c7c482f820186 798 SUPERFAMILY SSF52540 314 566 1.52E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2443 68fdebb7166153eec86c7c482f820186 798 Gene3D G3DSA:3.40.50.300 151 370 1.5E-64 T 13-10-2018 Trebr_2443 68fdebb7166153eec86c7c482f820186 798 Pfam PF04851 Type III restriction enzyme, res subunit 172 353 1.4E-40 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Trebr_2443 68fdebb7166153eec86c7c482f820186 798 SUPERFAMILY SSF52540 143 389 2.15E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2443 68fdebb7166153eec86c7c482f820186 798 Pfam PF08463 EcoEI R protein C-terminal 646 797 1.5E-12 T 13-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 Trebr_2443 68fdebb7166153eec86c7c482f820186 798 Pfam PF00271 Helicase conserved C-terminal domain 439 554 3.6E-7 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1029 2b09223c7a9974d2ec95926e4cdc214c 321 SMART SM00244 34 214 3.6E-33 T 13-10-2018 IPR001107 Band 7 domain Trebr_1029 2b09223c7a9974d2ec95926e4cdc214c 321 SUPERFAMILY SSF117892 106 216 2.48E-17 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily Trebr_1029 2b09223c7a9974d2ec95926e4cdc214c 321 TIGRFAM TIGR01933 hflK: HflK protein 36 315 4.5E-98 T 13-10-2018 IPR010201 HflK GO:0016021 Trebr_1029 2b09223c7a9974d2ec95926e4cdc214c 321 Pfam PF01145 SPFH domain / Band 7 family 38 227 1.3E-25 T 13-10-2018 IPR001107 Band 7 domain Trebr_1029 2b09223c7a9974d2ec95926e4cdc214c 321 Gene3D G3DSA:3.30.479.30 100 204 6.7E-16 T 13-10-2018 Trebr_1581 11a668b003b5f729192b1be21b013034 261 SUPERFAMILY SSF53271 92 258 3.73E-13 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like Trebr_1581 11a668b003b5f729192b1be21b013034 261 Gene3D G3DSA:3.40.50.2020 147 260 5.7E-9 T 13-10-2018 Trebr_2333 034d09ddb0455752f4320b038ac7e192 954 SMART SM01080 47 593 1.4E-15 T 13-10-2018 IPR007890 CHASE2 Trebr_2333 034d09ddb0455752f4320b038ac7e192 954 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 688 876 4.7E-33 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_2333 034d09ddb0455752f4320b038ac7e192 954 SMART SM00044 648 855 1.2E-14 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_2333 034d09ddb0455752f4320b038ac7e192 954 Pfam PF05226 CHASE2 domain 36 588 8.1E-31 T 13-10-2018 IPR007890 CHASE2 Trebr_2333 034d09ddb0455752f4320b038ac7e192 954 SUPERFAMILY SSF55073 683 877 4.08E-52 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_2333 034d09ddb0455752f4320b038ac7e192 954 Gene3D G3DSA:3.30.70.1230 682 883 2.5E-61 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0694 c8f498a6e7d23a67d9ce159b59fa8b41 316 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 316 62.996 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Trebr_0694 c8f498a6e7d23a67d9ce159b59fa8b41 316 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 109 190 8.8E-31 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Trebr_0694 c8f498a6e7d23a67d9ce159b59fa8b41 316 Gene3D G3DSA:3.40.47.10 1 316 5.2E-118 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_0694 c8f498a6e7d23a67d9ce159b59fa8b41 316 SUPERFAMILY SSF53901 8 316 5.64E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_0694 c8f498a6e7d23a67d9ce159b59fa8b41 316 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 2 316 2.3E-104 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Trebr_0694 c8f498a6e7d23a67d9ce159b59fa8b41 316 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 5.8E-34 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Trebr_1442 ee3994668855dd0cb6cade6b73aefaca 384 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 16 168 5.4E-5 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 Trebr_1442 ee3994668855dd0cb6cade6b73aefaca 384 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 234 328 1.6E-7 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Trebr_1442 ee3994668855dd0cb6cade6b73aefaca 384 Gene3D G3DSA:3.40.50.2000 192 359 6.2E-26 T 13-10-2018 Trebr_1442 ee3994668855dd0cb6cade6b73aefaca 384 SUPERFAMILY SSF53756 15 367 3.66E-22 T 13-10-2018 Trebr_0784 70dabe141af3c81316f37ba66758e6e3 63 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 56 5.1E-22 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_0784 70dabe141af3c81316f37ba66758e6e3 63 SUPERFAMILY SSF143800 1 61 1.26E-22 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0784 70dabe141af3c81316f37ba66758e6e3 63 Gene3D G3DSA:2.30.170.40 2 62 3.8E-18 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0784 70dabe141af3c81316f37ba66758e6e3 63 Pfam PF00830 Ribosomal L28 family 3 57 9.1E-22 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0784 70dabe141af3c81316f37ba66758e6e3 63 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 63 16.931 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 SUPERFAMILY SSF52540 163 431 2.45E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 ProSitePatterns PS00674 AAA-protein family signature. 307 325 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 SUPERFAMILY SSF140990 418 607 8.24E-66 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 336 1.9E-42 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 Gene3D G3DSA:3.40.50.300 158 336 3.2E-66 T 13-10-2018 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 Gene3D G3DSA:1.20.58.760 418 614 2.5E-68 T 13-10-2018 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 Pfam PF06480 FtsH Extracellular 20 104 1.6E-8 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 118 607 2.7E-217 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 18 612 35.034 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 Gene3D G3DSA:2.40.50.920 35 116 2.9E-7 T 13-10-2018 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 Gene3D G3DSA:1.10.8.60 338 415 3.3E-25 T 13-10-2018 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 Pfam PF01434 Peptidase family M41 398 605 6.9E-71 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Trebr_1768 4de1dd659388b20fb26c96209e9e41ce 616 SMART SM00382 200 339 9.5E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0659 1a96b7424ae347984f0afd9e52e4d570 434 Gene3D G3DSA:3.40.980.20 238 429 9.4E-14 T 13-10-2018 Trebr_0659 1a96b7424ae347984f0afd9e52e4d570 434 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 248 420 4.0E-29 T 13-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain Trebr_0659 1a96b7424ae347984f0afd9e52e4d570 434 SUPERFAMILY SSF142764 5 425 3.53E-87 T 13-10-2018 Trebr_0659 1a96b7424ae347984f0afd9e52e4d570 434 Gene3D G3DSA:3.40.50.10840 4 228 9.8E-61 T 13-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily Trebr_0659 1a96b7424ae347984f0afd9e52e4d570 434 Pfam PF07005 Putative sugar-binding N-terminal domain 5 229 3.1E-56 T 13-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain Trebr_0276 a542ecc268bd2b5955f120bd20fb8f2c 284 Pfam PF10646 Sporulation and spore germination 156 264 5.6E-20 T 13-10-2018 IPR019606 GerMN domain Trebr_0276 a542ecc268bd2b5955f120bd20fb8f2c 284 SMART SM00909 177 268 3.0E-22 T 13-10-2018 IPR019606 GerMN domain Trebr_0640 9f10457b0509205a2b2230c0fd571caa 394 Gene3D G3DSA:3.10.580.10 17 137 5.9E-6 T 13-10-2018 Trebr_0640 9f10457b0509205a2b2230c0fd571caa 394 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 192 392 4.1E-27 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0640 9f10457b0509205a2b2230c0fd571caa 394 Gene3D G3DSA:3.60.40.10 138 393 3.1E-44 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0640 9f10457b0509205a2b2230c0fd571caa 394 SUPERFAMILY SSF54631 19 135 6.33E-8 T 13-10-2018 Trebr_0640 9f10457b0509205a2b2230c0fd571caa 394 SUPERFAMILY SSF81606 178 331 2.01E-6 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0640 9f10457b0509205a2b2230c0fd571caa 394 SMART SM00331 165 392 1.1E-10 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0853 b51d0cb75d92ddae203100a90791634a 192 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 1.2E-69 T 13-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Trebr_0853 b51d0cb75d92ddae203100a90791634a 192 PIRSF PIRSF006102 1 192 7.3E-56 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Trebr_0853 b51d0cb75d92ddae203100a90791634a 192 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 191 3.7E-54 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Trebr_0853 b51d0cb75d92ddae203100a90791634a 192 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 23.288 T 13-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 Gene3D G3DSA:3.40.50.2300 62 305 2.5E-57 T 13-10-2018 Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 SMART SM00354 1 71 9.7E-29 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.6E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 SUPERFAMILY SSF53822 58 309 1.93E-51 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 Pfam PF13377 Periplasmic binding protein-like domain 165 314 3.1E-21 T 13-10-2018 Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 Gene3D G3DSA:1.10.260.40 1 58 1.6E-19 T 13-10-2018 Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 SUPERFAMILY SSF47413 1 59 4.82E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2578 2f75902ac98c450b07700cfcd45cbb49 331 Gene3D G3DSA:3.40.50.2300 156 285 2.5E-57 T 13-10-2018 Trebr_0905 8758de024af84716105b0344d579eebe 264 PIRSF PIRSF000386 1 259 2.7E-94 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Trebr_0905 8758de024af84716105b0344d579eebe 264 SUPERFAMILY SSF75217 1 225 4.8E-91 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases Trebr_0905 8758de024af84716105b0344d579eebe 264 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 264 99.9 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Trebr_0905 8758de024af84716105b0344d579eebe 264 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 221 6.0E-94 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Trebr_0905 8758de024af84716105b0344d579eebe 264 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 217 5.5E-67 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Trebr_0905 8758de024af84716105b0344d579eebe 264 Gene3D G3DSA:3.40.1280.10 1 168 2.1E-67 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Trebr_0905 8758de024af84716105b0344d579eebe 264 Gene3D G3DSA:1.10.1270.20 169 247 2.7E-28 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Trebr_0254 a952a9479ca6802251b363b3ea83db29 359 SMART SM00014 55 202 5.2E-12 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Trebr_0254 a952a9479ca6802251b363b3ea83db29 359 SUPERFAMILY SSF48317 11 206 1.44E-27 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Trebr_0254 a952a9479ca6802251b363b3ea83db29 359 Pfam PF01569 PAP2 superfamily 58 207 9.8E-19 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Trebr_0254 a952a9479ca6802251b363b3ea83db29 359 Gene3D G3DSA:1.20.144.10 85 226 1.3E-18 T 13-10-2018 Trebr_1049 e87a14feaab1472f84c4c1082a49cef8 202 Pfam PF01966 HD domain 31 151 2.4E-20 T 13-10-2018 IPR006674 HD domain Trebr_1049 e87a14feaab1472f84c4c1082a49cef8 202 Gene3D G3DSA:1.10.3210.10 7 200 2.7E-66 T 13-10-2018 Trebr_1049 e87a14feaab1472f84c4c1082a49cef8 202 SMART SM00471 25 160 1.6E-10 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_1049 e87a14feaab1472f84c4c1082a49cef8 202 SUPERFAMILY SSF109604 19 189 1.01E-40 T 13-10-2018 Trebr_1124 4955dcd7bf9500ebf16bd5041b4d6aa9 300 Pfam PF14268 YoaP-like 241 284 4.6E-17 T 13-10-2018 IPR025685 YoaP-like domain Trebr_1124 4955dcd7bf9500ebf16bd5041b4d6aa9 300 SUPERFAMILY SSF55729 55 111 2.9E-5 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_1124 4955dcd7bf9500ebf16bd5041b4d6aa9 300 Gene3D G3DSA:3.40.630.30 11 143 3.3E-5 T 13-10-2018 Trebr_2264 3beaef7d1ddcb796bbf12c010c091786 270 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 239 261 8.0E-12 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Trebr_2264 3beaef7d1ddcb796bbf12c010c091786 270 SUPERFAMILY SSF52540 8 261 1.81E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2264 3beaef7d1ddcb796bbf12c010c091786 270 SMART SM00382 33 238 1.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2264 3beaef7d1ddcb796bbf12c010c091786 270 Pfam PF00005 ABC transporter 25 189 4.1E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2264 3beaef7d1ddcb796bbf12c010c091786 270 Gene3D G3DSA:3.40.50.300 4 263 1.6E-57 T 13-10-2018 Trebr_0535 3e8bbcd1ff0c288956105f10afea8286 432 SUPERFAMILY SSF54631 48 173 1.02E-7 T 13-10-2018 Trebr_0535 3e8bbcd1ff0c288956105f10afea8286 432 SUPERFAMILY SSF81606 260 431 1.99E-6 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0535 3e8bbcd1ff0c288956105f10afea8286 432 SMART SM00331 194 432 1.3E-4 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0535 3e8bbcd1ff0c288956105f10afea8286 432 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 222 431 5.4E-17 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0535 3e8bbcd1ff0c288956105f10afea8286 432 Gene3D G3DSA:3.60.40.10 168 431 2.0E-32 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0535 3e8bbcd1ff0c288956105f10afea8286 432 Gene3D G3DSA:3.10.580.10 47 167 5.6E-6 T 13-10-2018 Trebr_1386 d3e02f0c99bc0099de158174731ae7df 336 SMART SM00363 15 72 2.2E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_1386 d3e02f0c99bc0099de158174731ae7df 336 Gene3D G3DSA:3.30.2350.10 88 303 5.9E-41 T 13-10-2018 Trebr_1386 d3e02f0c99bc0099de158174731ae7df 336 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 146 160 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1386 d3e02f0c99bc0099de158174731ae7df 336 Pfam PF00849 RNA pseudouridylate synthase 103 261 1.6E-25 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1386 d3e02f0c99bc0099de158174731ae7df 336 Pfam PF01479 S4 domain 15 61 3.1E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_1386 d3e02f0c99bc0099de158174731ae7df 336 SUPERFAMILY SSF55120 91 302 1.49E-39 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1386 d3e02f0c99bc0099de158174731ae7df 336 SUPERFAMILY SSF55174 15 66 8.58E-7 T 13-10-2018 Trebr_1386 d3e02f0c99bc0099de158174731ae7df 336 Gene3D G3DSA:3.10.290.10 2 65 3.9E-11 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Trebr_2210 202aa75eb77cbabaab0c829476c44422 117 Pfam PF13192 Thioredoxin domain 39 112 1.5E-23 T 13-10-2018 IPR012336 Thioredoxin-like fold Trebr_2210 202aa75eb77cbabaab0c829476c44422 117 SUPERFAMILY SSF52833 40 112 1.85E-16 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_2210 202aa75eb77cbabaab0c829476c44422 117 PIRSF PIRSF037031 37 114 4.1E-28 T 13-10-2018 IPR005243 Redox-active disulphide protein 2 Trebr_2210 202aa75eb77cbabaab0c829476c44422 117 PIRSF PIRSF037031 13 40 320.0 T 13-10-2018 IPR005243 Redox-active disulphide protein 2 Trebr_2210 202aa75eb77cbabaab0c829476c44422 117 TIGRFAM TIGR00412 redox_disulf_2: redox-active disulfide protein 2 40 114 6.1E-22 T 13-10-2018 IPR005243 Redox-active disulphide protein 2 Trebr_2210 202aa75eb77cbabaab0c829476c44422 117 Gene3D G3DSA:3.40.30.10 38 112 3.1E-25 T 13-10-2018 Trebr_1350 fdd7d9af15a85ea8bb22797ffc7fe136 131 Pfam PF12773 Double zinc ribbon 10 56 6.6E-7 T 13-10-2018 IPR025874 Double zinc ribbon Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 145 484 1.9E-106 T 13-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 SUPERFAMILY SSF55545 4 143 7.07E-19 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 SUPERFAMILY SSF51445 145 498 2.4E-111 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 Gene3D G3DSA:3.30.379.10 1 141 3.8E-25 T 13-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 PRINTS PR00738 Glycosyl hydrolase family 20 signature 449 465 2.4E-25 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 PRINTS PR00738 Glycosyl hydrolase family 20 signature 87 107 2.4E-25 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 PRINTS PR00738 Glycosyl hydrolase family 20 signature 302 315 2.4E-25 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 PRINTS PR00738 Glycosyl hydrolase family 20 signature 467 484 2.4E-25 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 PRINTS PR00738 Glycosyl hydrolase family 20 signature 280 298 2.4E-25 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 PRINTS PR00738 Glycosyl hydrolase family 20 signature 232 249 2.4E-25 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 5 141 1.2E-16 T 13-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 PIRSF PIRSF001093 61 511 1.3E-77 T 13-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 Trebr_1627 c0e408e258fbcd816b64e9b7d9e48c00 518 Gene3D G3DSA:3.20.20.80 144 516 2.0E-121 T 13-10-2018 Trebr_0873 5c42d369346e60143d070f481e6e3ec0 324 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 220 1.4E-18 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Trebr_0873 5c42d369346e60143d070f481e6e3ec0 324 Gene3D G3DSA:1.10.287.470 122 138 5.0E-27 T 13-10-2018 Trebr_0873 5c42d369346e60143d070f481e6e3ec0 324 Gene3D G3DSA:2.40.50.100 63 115 3.3E-6 T 13-10-2018 Trebr_0873 5c42d369346e60143d070f481e6e3ec0 324 Gene3D G3DSA:2.40.30.170 174 253 5.0E-27 T 13-10-2018 Trebr_0873 5c42d369346e60143d070f481e6e3ec0 324 SUPERFAMILY SSF111369 50 243 1.27E-10 T 13-10-2018 Trebr_0873 5c42d369346e60143d070f481e6e3ec0 324 Gene3D G3DSA:2.40.420.20 254 311 5.0E-27 T 13-10-2018 Trebr_0873 5c42d369346e60143d070f481e6e3ec0 324 Gene3D G3DSA:2.40.50.100 139 173 5.0E-27 T 13-10-2018 Trebr_2215 1e55840d426512047a5621f8a3a6aeeb 226 SUPERFAMILY SSF46785 40 88 2.77E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2215 1e55840d426512047a5621f8a3a6aeeb 226 Pfam PF02629 CoA binding domain 99 193 1.5E-5 T 13-10-2018 IPR003781 CoA-binding GO:0048037 Trebr_2215 1e55840d426512047a5621f8a3a6aeeb 226 Gene3D G3DSA:3.40.50.720 94 221 1.5E-29 T 13-10-2018 Trebr_2215 1e55840d426512047a5621f8a3a6aeeb 226 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 1 224 18.983 T 13-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 Trebr_2215 1e55840d426512047a5621f8a3a6aeeb 226 Gene3D G3DSA:1.10.10.10 3 86 3.0E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2215 1e55840d426512047a5621f8a3a6aeeb 226 SUPERFAMILY SSF51735 99 214 1.42E-16 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2222 4c00e5aa0c8e78a81a477cd3acf32e84 342 PIRSF PIRSF004869 2 324 5.9E-64 T 13-10-2018 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted Trebr_2222 4c00e5aa0c8e78a81a477cd3acf32e84 342 Gene3D G3DSA:3.20.20.70 53 241 1.1E-11 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_2222 4c00e5aa0c8e78a81a477cd3acf32e84 342 ProSitePatterns PS01087 Radical activating enzymes signature. 53 74 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 Trebr_2222 4c00e5aa0c8e78a81a477cd3acf32e84 342 Pfam PF13353 4Fe-4S single cluster domain 59 144 1.2E-5 T 13-10-2018 Trebr_2222 4c00e5aa0c8e78a81a477cd3acf32e84 342 Pfam PF04055 Radical SAM superfamily 60 172 1.2E-10 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_2222 4c00e5aa0c8e78a81a477cd3acf32e84 342 SUPERFAMILY SSF102114 49 180 1.22E-13 T 13-10-2018 Trebr_2549 3bea4fbf6a7b490fdc889ac1da8f895b 340 SUPERFAMILY SSF53613 1 329 3.43E-81 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2549 3bea4fbf6a7b490fdc889ac1da8f895b 340 Gene3D G3DSA:3.40.1190.20 1 340 5.1E-135 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2549 3bea4fbf6a7b490fdc889ac1da8f895b 340 Pfam PF00294 pfkB family carbohydrate kinase 1 317 9.4E-37 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB Trebr_1461 b84704584171870d81cdecca6fdd260e 365 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 365 65.312 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 Gene3D G3DSA:3.30.465.10 147 277 1.0E-27 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 SUPERFAMILY SSF56194 267 363 2.35E-32 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 SUPERFAMILY SSF56176 150 254 2.13E-17 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 267 362 1.9E-24 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 Gene3D G3DSA:3.30.43.10 7 92 1.9E-21 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 148 362 6.9E-53 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 Pfam PF01565 FAD binding domain 149 211 3.2E-5 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 Gene3D G3DSA:3.90.78.10 279 364 1.2E-28 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_1461 b84704584171870d81cdecca6fdd260e 365 SUPERFAMILY SSF56176 17 118 1.56E-11 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 SMART SM00490 424 521 1.1E-8 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 Gene3D G3DSA:1.10.8.630 4 116 6.5E-26 T 13-10-2018 Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 Pfam PF00270 DEAD/DEAH box helicase 150 291 1.1E-10 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 Pfam PF00271 Helicase conserved C-terminal domain 439 520 4.0E-7 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 Hamap MF_00983 Probable primosomal protein N' [priA]. 7 683 23.765 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 SUPERFAMILY SSF52540 148 529 6.62E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 TIGRFAM TIGR00595 priA: primosomal protein N' 152 597 3.6E-172 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 Gene3D G3DSA:3.40.50.300 121 310 3.0E-61 T 13-10-2018 Trebr_1170 2b482b41b63b3a3a69aac3f976dc86c6 684 SMART SM00487 128 323 2.0E-19 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_0500 e423786a92db15b5dfab271efdc8cccf 462 Pfam PF01554 MatE 34 194 4.4E-30 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0500 e423786a92db15b5dfab271efdc8cccf 462 Pfam PF01554 MatE 256 417 4.9E-19 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0500 e423786a92db15b5dfab271efdc8cccf 462 TIGRFAM TIGR00797 matE: MATE efflux family protein 34 405 9.2E-64 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0500 e423786a92db15b5dfab271efdc8cccf 462 PIRSF PIRSF006603 10 461 2.7E-90 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2133 db5905492995070f9c2b4044426d594f 96 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 6 92 3.7E-10 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Trebr_2133 db5905492995070f9c2b4044426d594f 96 SUPERFAMILY SSF69754 7 95 2.88E-12 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like Trebr_2133 db5905492995070f9c2b4044426d594f 96 Gene3D G3DSA:3.30.160.100 1 95 1.5E-9 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like Trebr_1675 1c82e6b29e8e525d014dba2cb4cbd37a 443 SUPERFAMILY SSF55874 319 423 4.32E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1675 1c82e6b29e8e525d014dba2cb4cbd37a 443 Pfam PF07730 Histidine kinase 244 307 6.1E-10 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Trebr_1675 1c82e6b29e8e525d014dba2cb4cbd37a 443 Gene3D G3DSA:3.30.565.10 318 439 5.1E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1793 da4ed34cd9eef59d292754d39399a04b 290 Pfam PF04055 Radical SAM superfamily 17 186 1.5E-9 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_1793 da4ed34cd9eef59d292754d39399a04b 290 SUPERFAMILY SSF102114 17 200 1.31E-10 T 13-10-2018 Trebr_1030 833ea3fd0e64ec2abe25bba0f854cb16 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 5.4E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1030 833ea3fd0e64ec2abe25bba0f854cb16 206 SUPERFAMILY SSF46689 3 78 2.41E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1030 833ea3fd0e64ec2abe25bba0f854cb16 206 Gene3D G3DSA:1.10.357.10 2 202 3.4E-24 T 13-10-2018 Trebr_1030 833ea3fd0e64ec2abe25bba0f854cb16 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1030 833ea3fd0e64ec2abe25bba0f854cb16 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.2E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_0548 5928abf100138f5e6a1f4fd5cb2ab308 284 Gene3D G3DSA:2.40.30.90 166 276 8.4E-33 T 13-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal Trebr_0548 5928abf100138f5e6a1f4fd5cb2ab308 284 Gene3D G3DSA:3.40.50.10790 2 164 4.6E-49 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal Trebr_0548 5928abf100138f5e6a1f4fd5cb2ab308 284 PIRSF PIRSF006779 1 276 1.8E-93 T 13-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase Trebr_0548 5928abf100138f5e6a1f4fd5cb2ab308 284 SUPERFAMILY SSF101852 168 273 8.63E-27 T 13-10-2018 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal Trebr_0548 5928abf100138f5e6a1f4fd5cb2ab308 284 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 5 268 8.3E-73 T 13-10-2018 IPR002747 SAM-dependent chlorinase/fluorinase Trebr_0548 5928abf100138f5e6a1f4fd5cb2ab308 284 SUPERFAMILY SSF102522 2 165 1.44E-55 T 13-10-2018 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal Trebr_1515 3e49342933422537861684d12a0aa20e 412 Pfam PF03102 NeuB family 28 299 4.8E-53 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 Trebr_1515 3e49342933422537861684d12a0aa20e 412 SMART SM00858 346 408 0.0086 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Trebr_1515 3e49342933422537861684d12a0aa20e 412 Pfam PF08666 SAF domain 348 407 5.3E-6 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Trebr_1515 3e49342933422537861684d12a0aa20e 412 Gene3D G3DSA:3.90.1210.10 347 412 7.3E-15 T 13-10-2018 Trebr_1515 3e49342933422537861684d12a0aa20e 412 SUPERFAMILY SSF51569 5 300 8.43E-54 T 13-10-2018 Trebr_1515 3e49342933422537861684d12a0aa20e 412 SUPERFAMILY SSF51269 342 407 2.83E-8 T 13-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 Trebr_0778 018bc19708aaeea0f2a82cb8dace4563 147 Pfam PF13581 Histidine kinase-like ATPase domain 14 133 3.8E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0778 018bc19708aaeea0f2a82cb8dace4563 147 SUPERFAMILY SSF55874 36 134 3.56E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0778 018bc19708aaeea0f2a82cb8dace4563 147 Gene3D G3DSA:3.30.565.10 7 141 1.0E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1645 4ec7d59025fa4be3c2f0b4dac85212ec 175 Gene3D G3DSA:2.30.30.30 115 170 1.4E-10 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 Trebr_1645 4ec7d59025fa4be3c2f0b4dac85212ec 175 Gene3D G3DSA:3.30.70.940 1 106 1.1E-6 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_1645 4ec7d59025fa4be3c2f0b4dac85212ec 175 SUPERFAMILY SSF50104 116 170 1.28E-7 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily Trebr_1645 4ec7d59025fa4be3c2f0b4dac85212ec 175 SUPERFAMILY SSF82679 3 103 1.83E-5 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_0985 86d0e508235d3d55fecb5423fdaf30dc 263 SUPERFAMILY SSF56176 177 261 6.54E-23 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Trebr_0985 86d0e508235d3d55fecb5423fdaf30dc 263 SUPERFAMILY SSF54631 41 184 2.91E-31 T 13-10-2018 Trebr_0985 86d0e508235d3d55fecb5423fdaf30dc 263 Gene3D G3DSA:3.10.580.10 27 176 9.3E-54 T 13-10-2018 Trebr_0985 86d0e508235d3d55fecb5423fdaf30dc 263 Pfam PF00571 CBS domain 117 165 2.9E-4 T 13-10-2018 IPR000644 CBS domain Trebr_0985 86d0e508235d3d55fecb5423fdaf30dc 263 Pfam PF00571 CBS domain 46 103 3.1E-4 T 13-10-2018 IPR000644 CBS domain Trebr_0985 86d0e508235d3d55fecb5423fdaf30dc 263 Gene3D G3DSA:3.30.465.10 177 263 1.5E-22 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Trebr_0985 86d0e508235d3d55fecb5423fdaf30dc 263 Pfam PF03471 Transporter associated domain 182 256 2.5E-21 T 13-10-2018 IPR005170 Transporter-associated domain Trebr_0985 86d0e508235d3d55fecb5423fdaf30dc 263 SMART SM01091 180 258 1.5E-25 T 13-10-2018 IPR005170 Transporter-associated domain Trebr_2105 316efc186882644e57a2a00832987243 68 ProSitePatterns PS01143 Ribosomal protein L31 signature. 34 55 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2105 316efc186882644e57a2a00832987243 68 SUPERFAMILY SSF143800 1 65 9.42E-27 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2105 316efc186882644e57a2a00832987243 68 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 3.8E-33 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2105 316efc186882644e57a2a00832987243 68 Gene3D G3DSA:2.30.170.50 1 68 4.1E-33 T 13-10-2018 Trebr_2105 316efc186882644e57a2a00832987243 68 PRINTS PR01249 Ribosomal protein L31 signature 30 45 1.3E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2105 316efc186882644e57a2a00832987243 68 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.3E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2105 316efc186882644e57a2a00832987243 68 PRINTS PR01249 Ribosomal protein L31 signature 45 63 1.3E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2105 316efc186882644e57a2a00832987243 68 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 67 31.296 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2105 316efc186882644e57a2a00832987243 68 Pfam PF01197 Ribosomal protein L31 1 64 1.5E-32 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Gene3D G3DSA:1.25.40.10 310 390 2.1E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Pfam PF13181 Tetratricopeptide repeat 140 171 0.035 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Pfam PF13181 Tetratricopeptide repeat 279 306 1.0E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Pfam PF13181 Tetratricopeptide repeat 209 241 0.11 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Gene3D G3DSA:1.25.40.10 137 309 1.7E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SUPERFAMILY SSF48452 263 368 2.6E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Pfam PF13174 Tetratricopeptide repeat 243 274 0.0063 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Pfam PF14559 Tetratricopeptide repeat 82 135 1.3E-8 T 13-10-2018 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Pfam PF14559 Tetratricopeptide repeat 322 385 4.0E-10 T 13-10-2018 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SUPERFAMILY SSF81901 41 277 2.01E-35 T 13-10-2018 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 Gene3D G3DSA:1.25.40.10 26 136 1.0E-21 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 70 103 0.046 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 138 171 1.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 276 309 22.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 36 69 8.5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 343 376 370.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 208 241 0.0073 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 172 205 2.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 242 275 0.3 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 310 342 54.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1392 aeaf325c3d64039d0f44785f6c57cb83 391 SMART SM00028 104 137 5.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2209 ae4b7afd32c13a1afba046b009ae727b 140 SUPERFAMILY SSF52788 5 126 6.54E-31 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily Trebr_2209 ae4b7afd32c13a1afba046b009ae727b 140 Gene3D G3DSA:3.40.50.2300 3 132 1.6E-39 T 13-10-2018 Trebr_2209 ae4b7afd32c13a1afba046b009ae727b 140 SMART SM00226 4 129 1.2E-27 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Trebr_2209 ae4b7afd32c13a1afba046b009ae727b 140 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 126 1.8E-18 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I Trebr_1432 6c6c74b0f30c14c67bb395c67a477a56 93 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 93 16.355 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 Trebr_1432 6c6c74b0f30c14c67bb395c67a477a56 93 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 92 1.6E-17 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1432 6c6c74b0f30c14c67bb395c67a477a56 93 Pfam PF01250 Ribosomal protein S6 3 90 1.3E-16 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1432 6c6c74b0f30c14c67bb395c67a477a56 93 SUPERFAMILY SSF54995 1 93 9.16E-21 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1432 6c6c74b0f30c14c67bb395c67a477a56 93 Gene3D G3DSA:3.30.70.60 1 93 1.1E-20 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Trebr_2035 95f9080fcd3e374d56cfbcd3da31afa0 130 Pfam PF13534 4Fe-4S dicluster domain 20 79 4.3E-10 T 13-10-2018 Trebr_2035 95f9080fcd3e374d56cfbcd3da31afa0 130 SUPERFAMILY SSF46548 16 92 2.27E-15 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_2035 95f9080fcd3e374d56cfbcd3da31afa0 130 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 65 76 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2035 95f9080fcd3e374d56cfbcd3da31afa0 130 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 21 32 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2035 95f9080fcd3e374d56cfbcd3da31afa0 130 Gene3D G3DSA:1.10.1060.10 2 104 1.1E-8 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_0188 468449af1236ed426e1440e26908f587 290 Gene3D G3DSA:1.10.3720.10 48 290 1.4E-63 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0188 468449af1236ed426e1440e26908f587 290 SUPERFAMILY SSF161098 52 279 3.66E-57 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0188 468449af1236ed426e1440e26908f587 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 280 1.2E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 SUPERFAMILY SSF58104 256 576 7.72E-45 T 13-10-2018 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 SMART SM00283 326 573 3.5E-50 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 Gene3D G3DSA:1.10.287.950 351 574 3.2E-40 T 13-10-2018 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 SMART SM00304 230 283 0.0084 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 389 496 5.6E-26 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 Gene3D G3DSA:1.10.287.950 231 342 1.1E-9 T 13-10-2018 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 453 482 2.5E-23 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 501 530 2.5E-23 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 347 376 2.5E-23 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 92 117 2.5E-23 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_2419 3c1fe77b63ccddea90dca7e238a42a07 616 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 424 451 2.5E-23 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0342 892d1a5754ab36d6464831a10d117d44 205 SUPERFAMILY SSF46894 101 201 1.19E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_0342 892d1a5754ab36d6464831a10d117d44 205 Gene3D G3DSA:1.10.10.10 95 203 6.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0342 892d1a5754ab36d6464831a10d117d44 205 Pfam PF00486 Transcriptional regulatory protein, C terminal 127 201 8.3E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_0342 892d1a5754ab36d6464831a10d117d44 205 SMART SM00862 125 201 1.3E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 Pfam PF01966 HD domain 23 116 1.3E-5 T 13-10-2018 IPR006674 HD domain Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 SUPERFAMILY SSF109604 23 159 7.46E-7 T 13-10-2018 Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 SUPERFAMILY SSF52540 265 589 1.37E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 Gene3D G3DSA:3.40.50.300 469 634 8.4E-9 T 13-10-2018 Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 21 208 3.0E-26 T 13-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 SMART SM00487 243 460 0.0037 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 Gene3D G3DSA:1.10.3210.30 12 179 3.6E-13 T 13-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 Gene3D G3DSA:3.40.50.300 247 444 1.0E-10 T 13-10-2018 Trebr_2179 145f9bfee051e0a6aeb82349f116c642 820 Pfam PF04851 Type III restriction enzyme, res subunit 251 395 5.2E-8 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Trebr_1837 2527800b2a73eeb5170e5db377754fd1 563 SMART SM01209 108 285 0.0083 T 13-10-2018 Trebr_1837 2527800b2a73eeb5170e5db377754fd1 563 Gene3D G3DSA:3.30.470.20 105 432 1.1E-58 T 13-10-2018 Trebr_1837 2527800b2a73eeb5170e5db377754fd1 563 Gene3D G3DSA:3.40.50.20 1 104 1.8E-5 T 13-10-2018 Trebr_1837 2527800b2a73eeb5170e5db377754fd1 563 SUPERFAMILY SSF52440 7 66 3.45E-8 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Trebr_1837 2527800b2a73eeb5170e5db377754fd1 563 Pfam PF13535 ATP-grasp domain 150 289 3.2E-14 T 13-10-2018 Trebr_1837 2527800b2a73eeb5170e5db377754fd1 563 SUPERFAMILY SSF56059 109 318 2.65E-30 T 13-10-2018 Trebr_0407 1f1bf114630a9a996c37d99fe3abb7ff 504 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 381 458 3.9E-9 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain Trebr_0407 1f1bf114630a9a996c37d99fe3abb7ff 504 Pfam PF13394 4Fe-4S single cluster domain 160 236 2.9E-6 T 13-10-2018 Trebr_0407 1f1bf114630a9a996c37d99fe3abb7ff 504 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 44 97 1.5E-5 T 13-10-2018 IPR008792 Coenzyme PQQ synthesis D Trebr_0407 1f1bf114630a9a996c37d99fe3abb7ff 504 Pfam PF04055 Radical SAM superfamily 158 312 2.0E-18 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0407 1f1bf114630a9a996c37d99fe3abb7ff 504 Gene3D G3DSA:3.20.20.70 148 453 2.2E-51 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0407 1f1bf114630a9a996c37d99fe3abb7ff 504 Pfam PF13186 Iron-sulfur cluster-binding domain 381 442 9.3E-12 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain Trebr_0407 1f1bf114630a9a996c37d99fe3abb7ff 504 SMART SM00729 153 352 0.008 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_0407 1f1bf114630a9a996c37d99fe3abb7ff 504 SUPERFAMILY SSF102114 152 448 2.62E-55 T 13-10-2018 Trebr_1836 ecc4ba94388533fe0a0634413cc36588 344 SMART SM00646 188 328 3.9E-32 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Trebr_1836 ecc4ba94388533fe0a0634413cc36588 344 SUPERFAMILY SSF53187 114 330 2.04E-43 T 13-10-2018 Trebr_1836 ecc4ba94388533fe0a0634413cc36588 344 SUPERFAMILY SSF55383 30 96 4.71E-6 T 13-10-2018 IPR036582 Copper amine oxidase-like, N-terminal domain superfamily Trebr_1836 ecc4ba94388533fe0a0634413cc36588 344 Gene3D G3DSA:3.40.630.40 108 338 1.2E-57 T 13-10-2018 Trebr_1836 ecc4ba94388533fe0a0634413cc36588 344 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 114 328 2.1E-48 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Trebr_1940 8e04b762fa1c1467bf2e5edca487ceab 749 Gene3D G3DSA:3.20.20.370 537 749 3.7E-24 T 13-10-2018 Trebr_1940 8e04b762fa1c1467bf2e5edca487ceab 749 Pfam PF01522 Polysaccharide deacetylase 539 668 7.9E-16 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Trebr_1940 8e04b762fa1c1467bf2e5edca487ceab 749 SUPERFAMILY SSF88713 534 747 1.11E-25 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Trebr_1940 8e04b762fa1c1467bf2e5edca487ceab 749 Pfam PF07676 WD40-like Beta Propeller Repeat 375 394 0.096 T 13-10-2018 IPR011659 WD40-like Beta Propeller Trebr_1940 8e04b762fa1c1467bf2e5edca487ceab 749 SUPERFAMILY SSF82171 132 423 1.49E-12 T 13-10-2018 Trebr_0950 b38b1b87d5b66c892f40d008536b15ad 384 Pfam PF01098 Cell cycle protein 22 377 9.7E-89 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_0854 f73378daf19753d88f9077e872b7f894 207 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 190 1.4E-64 T 13-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Trebr_0854 f73378daf19753d88f9077e872b7f894 207 PIRSF PIRSF006102 1 205 6.9E-72 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Trebr_0854 f73378daf19753d88f9077e872b7f894 207 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 185 5.4E-64 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Trebr_0854 f73378daf19753d88f9077e872b7f894 207 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 196 24.51 T 13-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Trebr_0102 731ccb613a521bee53c74b8d1c8717e7 122 Pfam PF00072 Response regulator receiver domain 6 117 2.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0102 731ccb613a521bee53c74b8d1c8717e7 122 Gene3D G3DSA:3.40.50.12740 3 122 7.3E-36 T 13-10-2018 Trebr_0102 731ccb613a521bee53c74b8d1c8717e7 122 SMART SM00448 4 117 9.3E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0102 731ccb613a521bee53c74b8d1c8717e7 122 SUPERFAMILY SSF52172 2 121 5.27E-37 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_2219 508e991e8294bb50e1f17363bc181bb3 554 SUPERFAMILY SSF51445 12 306 9.37E-14 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2219 508e991e8294bb50e1f17363bc181bb3 554 Gene3D G3DSA:3.20.20.80 24 337 1.8E-22 T 13-10-2018 Trebr_1481 775604d1a7b602180a0aa045bccfcc33 345 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 345 5.1E-124 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Trebr_1481 775604d1a7b602180a0aa045bccfcc33 345 SUPERFAMILY SSF111337 1 345 9.29E-121 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Trebr_1481 775604d1a7b602180a0aa045bccfcc33 345 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 345 43.045 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Trebr_1481 775604d1a7b602180a0aa045bccfcc33 345 Gene3D G3DSA:2.40.10.240 64 165 8.4E-116 T 13-10-2018 Trebr_1481 775604d1a7b602180a0aa045bccfcc33 345 Gene3D G3DSA:3.40.1780.10 14 344 8.4E-116 T 13-10-2018 Trebr_1481 775604d1a7b602180a0aa045bccfcc33 345 Pfam PF02547 Queuosine biosynthesis protein 4 344 2.1E-124 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Trebr_2177 6856e96c93d4187bbbde400f0eb02f62 614 Pfam PF09709 CRISPR-associated protein (Cas_Csd1) 8 597 1.8E-125 T 13-10-2018 IPR010144 CRISPR-associated protein, Csd1-type Trebr_2177 6856e96c93d4187bbbde400f0eb02f62 614 TIGRFAM TIGR01863 cas_Csd1: CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG 22 602 4.1E-94 T 13-10-2018 IPR010144 CRISPR-associated protein, Csd1-type Trebr_2368 6d89f95db105d58c7940bc94b9561fed 501 ProSitePatterns PS01163 Galactose-1-phosphate uridyl transferase family 2 signature. 265 282 - T 13-10-2018 IPR023425 Galactose-1-phosphate uridyl transferase, class II, conserved site GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2368 6d89f95db105d58c7940bc94b9561fed 501 TIGRFAM TIGR01239 galT_2: galactose-1-phosphate uridylyltransferase 6 500 4.9E-202 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2368 6d89f95db105d58c7940bc94b9561fed 501 Hamap MF_00571 Galactose-1-phosphate uridylyltransferase [galT]. 1 501 244.217 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2368 6d89f95db105d58c7940bc94b9561fed 501 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 58 237 1.4E-34 T 13-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 Trebr_2368 6d89f95db105d58c7940bc94b9561fed 501 PIRSF PIRSF006005 1 501 2.1E-208 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Trebr_2368 6d89f95db105d58c7940bc94b9561fed 501 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 252 450 1.5E-33 T 13-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 Trebr_1157 05440d0a635bc3991fe3f7d7251a67ae 149 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 48 141 2.2E-15 T 13-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain Trebr_1157 05440d0a635bc3991fe3f7d7251a67ae 149 SUPERFAMILY SSF50475 2 142 3.37E-26 T 13-10-2018 Trebr_1157 05440d0a635bc3991fe3f7d7251a67ae 149 Gene3D G3DSA:2.30.110.10 2 149 3.3E-35 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 690 26.83 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 SUPERFAMILY SSF143724 110 321 2.94E-43 T 13-10-2018 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 112 2.4E-37 T 13-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 685 1.0E-239 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 Pfam PF13090 Polyphosphate kinase C-terminal domain 340 685 4.7E-147 T 13-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 SUPERFAMILY SSF56024 508 690 1.44E-62 T 13-10-2018 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 Gene3D G3DSA:3.30.870.10 508 695 4.9E-62 T 13-10-2018 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 PIRSF PIRSF015589 1 700 1.2E-252 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 Pfam PF02503 Polyphosphate kinase middle domain 122 327 1.5E-50 T 13-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 Gene3D G3DSA:3.30.1840.10 2 319 8.6E-95 T 13-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 SUPERFAMILY SSF140356 4 108 6.41E-36 T 13-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 Gene3D G3DSA:3.30.870.10 326 507 1.6E-72 T 13-10-2018 Trebr_0306 550cac8e1c56dc1133091b2a19723f28 709 SUPERFAMILY SSF56024 325 501 8.75E-55 T 13-10-2018 Trebr_1309 c9f92b8dccc3b6c6d56d140abb7b4de3 402 SUPERFAMILY SSF63825 19 220 5.75E-5 T 13-10-2018 Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 47 5.8E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 SUPERFAMILY SSF53822 59 311 1.59E-26 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 Pfam PF13407 Periplasmic binding protein domain 66 310 3.1E-16 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 Gene3D G3DSA:1.10.260.40 1 57 1.3E-19 T 13-10-2018 Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 Gene3D G3DSA:3.40.50.2300 71 326 2.7E-61 T 13-10-2018 Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 SUPERFAMILY SSF47413 1 57 8.53E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 13-10-2018 Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 SMART SM00354 1 70 2.8E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_1082 e30826bcb8cb2c7f8f11704d492ebfbd 344 Gene3D G3DSA:3.40.50.2300 165 334 2.7E-61 T 13-10-2018 Trebr_0848 6acf4a184a1054566524601e8ba917d3 85 Gene3D G3DSA:1.10.150.20 1 85 6.3E-36 T 13-10-2018 Trebr_0848 6acf4a184a1054566524601e8ba917d3 85 Pfam PF04994 TfoX C-terminal domain 2 78 1.5E-23 T 13-10-2018 IPR007077 TfoX, C-terminal Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 Gene3D G3DSA:2.30.30.100 335 385 8.8E-6 T 13-10-2018 Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 132 247 6.2E-26 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 SUPERFAMILY SSF55681 96 296 6.56E-38 T 13-10-2018 Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 Pfam PF03099 Biotin/lipoate A/B protein ligase family 140 244 4.3E-9 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 Pfam PF08279 HTH domain 6 58 3.9E-14 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 Gene3D G3DSA:1.10.10.10 1 61 1.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 Gene3D G3DSA:3.30.930.10 87 309 6.2E-44 T 13-10-2018 Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 6 384 28.477 T 13-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 Trebr_2520 7202ab5f39238e0dfb151c8b6bb3750c 390 SUPERFAMILY SSF46785 4 60 2.45E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0236 879dc69109e4c1fee9a7412127b318e3 83 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 14 56 5.5E-8 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Trebr_0236 879dc69109e4c1fee9a7412127b318e3 83 Gene3D G3DSA:2.10.260.10 11 52 1.1E-11 T 13-10-2018 Trebr_0236 879dc69109e4c1fee9a7412127b318e3 83 SUPERFAMILY SSF89447 11 54 2.88E-11 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily Trebr_0236 879dc69109e4c1fee9a7412127b318e3 83 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 13 55 2.3E-13 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Trebr_0236 879dc69109e4c1fee9a7412127b318e3 83 SMART SM00966 14 60 3.0E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Trebr_1257 e74fff6a459fab7e40fee998cded6fac 161 SMART SM00260 5 149 1.5E-39 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_1257 e74fff6a459fab7e40fee998cded6fac 161 SUPERFAMILY SSF50341 4 153 3.27E-36 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_1257 e74fff6a459fab7e40fee998cded6fac 161 Pfam PF01584 CheW-like domain 9 152 1.0E-31 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_1257 e74fff6a459fab7e40fee998cded6fac 161 Gene3D G3DSA:2.40.50.180 28 144 3.1E-38 T 13-10-2018 Trebr_1257 e74fff6a459fab7e40fee998cded6fac 161 Gene3D G3DSA:2.30.30.40 11 143 3.1E-38 T 13-10-2018 Trebr_1020 8172b728a6db177a7eda0ded5d951ad2 101 SMART SM00287 29 101 0.0013 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type Trebr_1020 8172b728a6db177a7eda0ded5d951ad2 101 Gene3D G3DSA:2.30.30.40 22 100 5.2E-17 T 13-10-2018 Trebr_1020 8172b728a6db177a7eda0ded5d951ad2 101 Pfam PF08239 Bacterial SH3 domain 37 98 4.8E-13 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type Trebr_0480 afe9886cbae9c92c5d054ab8a325aead 417 SUPERFAMILY SSF53448 43 284 2.64E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0480 afe9886cbae9c92c5d054ab8a325aead 417 Gene3D G3DSA:3.90.550.10 28 274 3.7E-17 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0480 afe9886cbae9c92c5d054ab8a325aead 417 Pfam PF13641 Glycosyltransferase like family 2 42 273 4.4E-16 T 13-10-2018 Trebr_1865 b45f1d928e00986932ed8a89266fb72c 407 Gene3D G3DSA:3.40.50.410 241 405 8.9E-11 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_1865 b45f1d928e00986932ed8a89266fb72c 407 SUPERFAMILY SSF53300 246 370 5.09E-16 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 320 4.7E-104 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 SUPERFAMILY SSF48163 314 354 3.66E-6 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 SUPERFAMILY SSF48163 388 514 1.7E-26 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 4.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 4.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 PRINTS PR00987 Glutamyl-tRNA synthetase signature 193 203 4.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 4.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 PRINTS PR00987 Glutamyl-tRNA synthetase signature 209 217 4.7E-25 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 Gene3D G3DSA:3.40.50.620 1 328 3.8E-147 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 515 32.434 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 Gene3D G3DSA:1.10.10.350 415 519 7.3E-23 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 344 1.5E-146 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Trebr_2063 0f120b16ffd28a1a6671bf45df2623f9 519 SUPERFAMILY SSF52374 3 313 5.33E-113 T 13-10-2018 Trebr_0884 63d44860f43a59d354331eb9bb6b010c 209 Pfam PF09186 Domain of unknown function (DUF1949) 137 191 5.7E-7 T 13-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal Trebr_0884 63d44860f43a59d354331eb9bb6b010c 209 Pfam PF01205 Uncharacterized protein family UPF0029 15 120 1.7E-27 T 13-10-2018 IPR001498 Impact, N-terminal Trebr_0884 63d44860f43a59d354331eb9bb6b010c 209 Gene3D G3DSA:3.30.230.30 2 126 1.0E-43 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily Trebr_0884 63d44860f43a59d354331eb9bb6b010c 209 SUPERFAMILY SSF54980 132 198 1.51E-7 T 13-10-2018 IPR035647 EF-G domain III/V-like Trebr_0884 63d44860f43a59d354331eb9bb6b010c 209 SUPERFAMILY SSF54211 4 123 3.6E-36 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1092 c25b40676d87668219b74a3d437ae8fd 447 Gene3D G3DSA:3.90.550.10 34 283 3.6E-9 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1092 c25b40676d87668219b74a3d437ae8fd 447 SUPERFAMILY SSF53448 39 272 1.22E-13 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0279 664f9b9b2f1e3791dff560e18962e370 448 SUPERFAMILY SSF51621 116 447 3.45E-64 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Trebr_0279 664f9b9b2f1e3791dff560e18962e370 448 Pfam PF01467 Cytidylyltransferase-like 27 138 5.5E-10 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Trebr_0279 664f9b9b2f1e3791dff560e18962e370 448 SUPERFAMILY SSF52374 27 148 4.5E-13 T 13-10-2018 Trebr_0279 664f9b9b2f1e3791dff560e18962e370 448 Gene3D G3DSA:3.40.50.620 17 151 4.1E-24 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0279 664f9b9b2f1e3791dff560e18962e370 448 TIGRFAM TIGR02320 PEP_mutase: phosphoenolpyruvate mutase 164 447 2.7E-122 T 13-10-2018 IPR012698 Phosphoenolpyruvate phosphomutase, core GO:0050188 KEGG: 00440+5.4.2.9|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7419|MetaCyc: PWY-7510|MetaCyc: PWY-7769 Trebr_0279 664f9b9b2f1e3791dff560e18962e370 448 Pfam PF13714 Phosphoenolpyruvate phosphomutase 164 422 2.2E-64 T 13-10-2018 Trebr_0279 664f9b9b2f1e3791dff560e18962e370 448 Gene3D G3DSA:3.20.20.60 156 441 1.5E-70 T 13-10-2018 Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 Gene3D G3DSA:3.40.50.300 310 552 1.4E-41 T 13-10-2018 Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 Pfam PF00005 ABC transporter 28 175 1.7E-7 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 Pfam PF00005 ABC transporter 340 494 9.0E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 SUPERFAMILY SSF52540 323 545 2.5E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 Gene3D G3DSA:3.40.50.300 2 278 2.6E-20 T 13-10-2018 Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 SMART SM00382 349 544 1.4E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 SMART SM00382 32 220 0.78 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0473 f1d4283996a78e8b062c27f7491226dc 556 SUPERFAMILY SSF52540 7 193 7.99E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0360 79b49008ddab96df61b4e2de3fc80aaf 100 Pfam PF01381 Helix-turn-helix 12 65 9.2E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0360 79b49008ddab96df61b4e2de3fc80aaf 100 Gene3D G3DSA:1.10.260.40 1 76 2.0E-17 T 13-10-2018 Trebr_0360 79b49008ddab96df61b4e2de3fc80aaf 100 SUPERFAMILY SSF47413 3 70 4.56E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0360 79b49008ddab96df61b4e2de3fc80aaf 100 SMART SM00530 11 66 8.4E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2000 b6b4ebe2d66c806d67aa396ad779c300 222 Gene3D G3DSA:3.40.50.300 1 221 2.1E-50 T 13-10-2018 Trebr_2000 b6b4ebe2d66c806d67aa396ad779c300 222 SUPERFAMILY SSF52540 1 219 6.12E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2000 b6b4ebe2d66c806d67aa396ad779c300 222 SMART SM00382 30 219 1.9E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2000 b6b4ebe2d66c806d67aa396ad779c300 222 Pfam PF00005 ABC transporter 22 170 2.0E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2545 61288020b1a2184bf4d450abf977df15 318 Gene3D G3DSA:3.30.420.40 128 298 2.3E-91 T 13-10-2018 Trebr_2545 61288020b1a2184bf4d450abf977df15 318 SUPERFAMILY SSF53067 1 314 1.84E-60 T 13-10-2018 Trebr_2545 61288020b1a2184bf4d450abf977df15 318 Pfam PF00480 ROK family 3 313 1.4E-71 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Trebr_2545 61288020b1a2184bf4d450abf977df15 318 Gene3D G3DSA:3.30.420.40 4 311 2.3E-91 T 13-10-2018 Trebr_2545 61288020b1a2184bf4d450abf977df15 318 ProSitePatterns PS01125 ROK family signature. 136 163 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Trebr_0628 848259b2b17c5743173b4db550beacd6 611 Pfam PF13311 Protein of unknown function (DUF4080) 401 544 1.1E-31 T 13-10-2018 IPR025288 Domain of unknown function DUF4080 Trebr_0628 848259b2b17c5743173b4db550beacd6 611 Pfam PF02310 B12 binding domain 14 129 1.9E-11 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Trebr_0628 848259b2b17c5743173b4db550beacd6 611 Pfam PF04055 Radical SAM superfamily 210 366 7.3E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0628 848259b2b17c5743173b4db550beacd6 611 SUPERFAMILY SSF52242 46 135 3.92E-5 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Trebr_0628 848259b2b17c5743173b4db550beacd6 611 SUPERFAMILY SSF102114 202 415 2.22E-40 T 13-10-2018 Trebr_0628 848259b2b17c5743173b4db550beacd6 611 Gene3D G3DSA:3.80.30.20 203 404 9.2E-21 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Trebr_0628 848259b2b17c5743173b4db550beacd6 611 SMART SM00729 205 413 2.9E-21 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_1393 782b00faca9eea8b88eeedda188223c5 342 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 6 342 58.545 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Trebr_1393 782b00faca9eea8b88eeedda188223c5 342 PIRSF PIRSF006004 5 342 3.1E-108 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 Trebr_1393 782b00faca9eea8b88eeedda188223c5 342 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 11 337 9.4E-96 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Trebr_1393 782b00faca9eea8b88eeedda188223c5 342 SUPERFAMILY SSF102114 101 317 2.88E-17 T 13-10-2018 Trebr_1393 782b00faca9eea8b88eeedda188223c5 342 Pfam PF04055 Radical SAM superfamily 108 264 1.3E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_1393 782b00faca9eea8b88eeedda188223c5 342 Gene3D G3DSA:1.10.150.530 13 64 3.4E-9 T 13-10-2018 Trebr_1393 782b00faca9eea8b88eeedda188223c5 342 Gene3D G3DSA:3.20.20.70 65 327 2.3E-89 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1757 ee4ffa6d06c421e426d090a9396cd533 218 SUPERFAMILY SSF82679 35 140 1.12E-11 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_1757 ee4ffa6d06c421e426d090a9396cd533 218 Gene3D G3DSA:3.30.70.940 32 140 3.5E-10 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_1757 ee4ffa6d06c421e426d090a9396cd533 218 SMART SM00739 152 179 0.0065 T 13-10-2018 IPR005824 KOW Trebr_1757 ee4ffa6d06c421e426d090a9396cd533 218 SMART SM00738 34 140 1.4E-7 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_1757 ee4ffa6d06c421e426d090a9396cd533 218 SUPERFAMILY SSF50104 150 203 1.46E-7 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily Trebr_1757 ee4ffa6d06c421e426d090a9396cd533 218 Gene3D G3DSA:2.30.30.30 147 205 3.3E-9 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 Trebr_1757 ee4ffa6d06c421e426d090a9396cd533 218 Pfam PF02357 Transcription termination factor nusG 35 131 7.1E-9 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_2539 b7521a1ee4c303b5ba37240fef9c1463 304 Pfam PF12801 4Fe-4S binding domain 111 141 0.0017 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2539 b7521a1ee4c303b5ba37240fef9c1463 304 Pfam PF12801 4Fe-4S binding domain 200 227 0.0019 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2539 b7521a1ee4c303b5ba37240fef9c1463 304 Pfam PF13187 4Fe-4S dicluster domain 243 289 1.0E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2539 b7521a1ee4c303b5ba37240fef9c1463 304 SUPERFAMILY SSF54862 119 292 8.38E-17 T 13-10-2018 Trebr_2539 b7521a1ee4c303b5ba37240fef9c1463 304 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 244 255 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2539 b7521a1ee4c303b5ba37240fef9c1463 304 Gene3D G3DSA:3.30.70.20 235 293 9.9E-10 T 13-10-2018 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 70 1.0E-11 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 2 78 4.8E-30 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.1E-33 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.1E-33 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.1E-33 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 83 24.976 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 Gene3D G3DSA:2.40.50.100 21 85 5.7E-26 T 13-10-2018 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 Pfam PF01016 Ribosomal L27 protein 3 80 9.5E-34 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 SUPERFAMILY SSF110324 3 78 6.98E-29 T 13-10-2018 Trebr_1779 3d7cf4f6496116811af578a5d5f92571 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2501 3b95b938198d6ea28adea994329cbc27 95 Pfam PF04316 Anti-sigma-28 factor, FlgM 32 90 4.4E-10 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal Trebr_2501 3b95b938198d6ea28adea994329cbc27 95 SUPERFAMILY SSF101498 3 90 5.62E-8 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily Trebr_1075 0d59aac737b0c81ec880e5e07571df38 558 TIGRFAM TIGR00337 PyrG: CTP synthase 1 526 1.2E-231 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Trebr_1075 0d59aac737b0c81ec880e5e07571df38 558 Hamap MF_01227 CTP synthase [pyrG]. 2 532 49.254 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Trebr_1075 0d59aac737b0c81ec880e5e07571df38 558 Gene3D G3DSA:3.40.50.300 1 285 7.3E-125 T 13-10-2018 Trebr_1075 0d59aac737b0c81ec880e5e07571df38 558 SUPERFAMILY SSF52540 1 268 1.36E-117 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1075 0d59aac737b0c81ec880e5e07571df38 558 SUPERFAMILY SSF52317 289 532 2.69E-77 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1075 0d59aac737b0c81ec880e5e07571df38 558 Gene3D G3DSA:3.40.50.880 286 542 3.8E-102 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1075 0d59aac737b0c81ec880e5e07571df38 558 Pfam PF00117 Glutamine amidotransferase class-I 302 526 1.1E-53 T 13-10-2018 IPR017926 Glutamine amidotransferase Trebr_1075 0d59aac737b0c81ec880e5e07571df38 558 Pfam PF06418 CTP synthase N-terminus 3 266 2.4E-120 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Trebr_1650 27d4737c83dc3fd7d75d5ec1152497a4 407 Gene3D G3DSA:3.40.50.2000 30 208 9.1E-9 T 13-10-2018 Trebr_1650 27d4737c83dc3fd7d75d5ec1152497a4 407 Gene3D G3DSA:3.40.50.2000 209 403 2.7E-31 T 13-10-2018 Trebr_1650 27d4737c83dc3fd7d75d5ec1152497a4 407 SUPERFAMILY SSF53756 16 401 1.06E-44 T 13-10-2018 Trebr_1650 27d4737c83dc3fd7d75d5ec1152497a4 407 Pfam PF00534 Glycosyl transferases group 1 211 381 6.5E-24 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_2465 a47f6e1ce57a3822d49f20ad558d8fc0 671 SUPERFAMILY SSF56935 38 671 2.23E-104 T 13-10-2018 Trebr_2465 a47f6e1ce57a3822d49f20ad558d8fc0 671 Gene3D G3DSA:2.40.170.20 171 671 1.2E-61 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Trebr_2465 a47f6e1ce57a3822d49f20ad558d8fc0 671 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 161 3.4E-27 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain Trebr_2465 a47f6e1ce57a3822d49f20ad558d8fc0 671 Pfam PF00593 TonB dependent receptor 236 670 6.6E-31 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Trebr_2465 a47f6e1ce57a3822d49f20ad558d8fc0 671 Gene3D G3DSA:2.170.130.10 44 170 1.7E-32 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Trebr_2378 5724378d588125039c73dcd5205fdb66 195 SUPERFAMILY SSF55729 1 168 1.64E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_2378 5724378d588125039c73dcd5205fdb66 195 Pfam PF13420 Acetyltransferase (GNAT) domain 8 163 2.9E-24 T 13-10-2018 Trebr_2378 5724378d588125039c73dcd5205fdb66 195 Gene3D G3DSA:3.40.630.30 3 172 2.5E-41 T 13-10-2018 Trebr_1159 e5b8b270d9f04544b47dff98d1884c53 414 Pfam PF01966 HD domain 53 124 1.9E-9 T 13-10-2018 IPR006674 HD domain Trebr_1159 e5b8b270d9f04544b47dff98d1884c53 414 SUPERFAMILY SSF109604 5 323 2.75E-64 T 13-10-2018 Trebr_1159 e5b8b270d9f04544b47dff98d1884c53 414 Gene3D G3DSA:1.10.3210.10 5 275 3.8E-62 T 13-10-2018 Trebr_1159 e5b8b270d9f04544b47dff98d1884c53 414 SMART SM00471 49 184 3.9E-9 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_1880 697016bcbb432792b564161ec8df0e18 557 Pfam PF02875 Mur ligase family, glutamate ligase domain 386 470 3.2E-18 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 SUPERFAMILY SSF53244 386 545 3.4E-38 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 SUPERFAMILY SSF53623 113 385 1.7E-47 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 Gene3D G3DSA:3.40.1190.10 113 389 1.6E-61 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 SUPERFAMILY SSF63418 18 111 7.85E-20 T 13-10-2018 IPR035911 MurE/MurF, N-terminal Trebr_1880 697016bcbb432792b564161ec8df0e18 557 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 25 543 1.3E-148 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 Gene3D G3DSA:3.40.1390.10 3 112 1.0E-20 T 13-10-2018 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 Pfam PF01225 Mur ligase family, catalytic domain 25 90 1.5E-10 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 Pfam PF08245 Mur ligase middle domain 122 364 1.8E-34 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 543 29.619 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Trebr_1880 697016bcbb432792b564161ec8df0e18 557 Gene3D G3DSA:3.90.190.20 390 547 2.2E-49 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 SUPERFAMILY SSF51735 10 260 9.61E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 258 3.8E-64 T 13-10-2018 Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 Gene3D G3DSA:3.40.50.720 1 266 3.7E-84 T 13-10-2018 Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 6.8E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 6.8E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 6.8E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0099 db8a7ce167df5caaa4bb274e764b003b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.5E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 SUPERFAMILY SSF52374 3 707 2.71E-139 T 13-10-2018 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 658 684 3.8E-6 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 SUPERFAMILY SSF50677 228 458 8.9E-46 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 Gene3D G3DSA:3.10.20.590 825 887 1.7E-17 T 13-10-2018 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 Pfam PF08264 Anticodon-binding domain of tRNA 738 845 1.1E-13 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 3 886 22.642 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 SUPERFAMILY SSF47323 701 887 5.79E-29 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 887 0.0 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 Pfam PF09334 tRNA synthetases class I (M) 43 186 1.2E-19 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 56 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 PRINTS PR00985 Leucyl-tRNA synthetase signature 605 615 6.8E-56 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 PRINTS PR00985 Leucyl-tRNA synthetase signature 217 236 6.8E-56 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 PRINTS PR00985 Leucyl-tRNA synthetase signature 533 551 6.8E-56 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 PRINTS PR00985 Leucyl-tRNA synthetase signature 572 594 6.8E-56 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 PRINTS PR00985 Leucyl-tRNA synthetase signature 188 201 6.8E-56 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 PRINTS PR00985 Leucyl-tRNA synthetase signature 156 172 6.8E-56 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 PRINTS PR00985 Leucyl-tRNA synthetase signature 130 147 6.8E-56 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Trebr_1433 3aac52e18d1c02b977864fe8118881cc 887 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 223 383 1.2E-58 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 178 8.3E-43 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 SUPERFAMILY SSF47781 65 132 2.06E-16 T 13-10-2018 IPR010994 RuvA domain 2-like Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 Gene3D G3DSA:2.40.50.140 1 65 6.5E-16 T 13-10-2018 Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 Gene3D G3DSA:1.10.150.20 67 138 3.4E-21 T 13-10-2018 Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 205 25.517 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 SMART SM00278 108 127 0.071 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 SMART SM00278 73 92 18.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 SUPERFAMILY SSF50249 1 63 1.03E-12 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 Pfam PF01330 RuvA N terminal domain 1 62 1.2E-13 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 Trebr_1479 72a1e27d4f3177be8d93d5637ac3edff 205 Pfam PF14520 Helix-hairpin-helix domain 72 129 4.9E-13 T 13-10-2018 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Gene3D G3DSA:3.30.1480.10 1 123 2.3E-32 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Pfam PF13184 NusA-like KH domain 229 296 2.0E-29 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 SUPERFAMILY SSF54814 278 342 3.47E-15 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 SUPERFAMILY SSF54814 199 276 9.81E-29 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 390 26.958 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 343 5.4E-125 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Pfam PF00575 S1 RNA binding domain 131 194 6.3E-7 T 13-10-2018 IPR003029 S1 domain GO:0003676 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Gene3D G3DSA:2.40.50.140 135 197 4.0E-19 T 13-10-2018 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Gene3D G3DSA:3.30.300.20 198 276 4.3E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 SUPERFAMILY SSF69705 1 124 2.62E-29 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 SUPERFAMILY SSF50249 131 198 1.14E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 SMART SM00316 133 199 3.8E-9 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Pfam PF08529 NusA N-terminal domain 6 124 3.1E-28 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Pfam PF13248 zinc-ribbon domain 451 475 7.9E-8 T 13-10-2018 Trebr_1971 c9befb5602aea476a55ad4bb4be481a9 483 Gene3D G3DSA:3.30.300.20 278 452 9.7E-35 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 8 417 1.4E-155 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 SUPERFAMILY SSF53686 7 416 3.4E-116 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 82 96 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 Gene3D G3DSA:3.40.50.1100 55 415 8.4E-154 T 13-10-2018 Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 422 45.43 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 PIRSF PIRSF001413 272 426 6.1E-40 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 PIRSF PIRSF001413 1 268 3.9E-99 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 55 409 1.7E-38 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Trebr_1625 f971e99397ff6a38f1598e7dbab90d47 468 Gene3D G3DSA:3.40.50.1100 11 207 8.4E-154 T 13-10-2018 Trebr_1686 741f3defa4635840b99dcbcdfb8152e1 461 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 104 454 3.7E-171 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Trebr_1686 741f3defa4635840b99dcbcdfb8152e1 461 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 103 458 4.0E-152 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Trebr_1686 741f3defa4635840b99dcbcdfb8152e1 461 PIRSF PIRSF015658 2 83 16.0 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Trebr_1686 741f3defa4635840b99dcbcdfb8152e1 461 PIRSF PIRSF015658 73 460 4.5E-176 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Trebr_2086 0756fa2bf15e9c134cf1d4e579c8a467 413 SMART SM00448 294 405 2.8E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2086 0756fa2bf15e9c134cf1d4e579c8a467 413 Gene3D G3DSA:3.40.50.2300 283 412 1.2E-27 T 13-10-2018 Trebr_2086 0756fa2bf15e9c134cf1d4e579c8a467 413 SUPERFAMILY SSF52172 1 125 1.1E-12 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_2086 0756fa2bf15e9c134cf1d4e579c8a467 413 Gene3D G3DSA:3.40.50.12740 2 235 6.5E-10 T 13-10-2018 Trebr_2086 0756fa2bf15e9c134cf1d4e579c8a467 413 SUPERFAMILY SSF52172 293 409 1.99E-27 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_2086 0756fa2bf15e9c134cf1d4e579c8a467 413 Pfam PF00072 Response regulator receiver domain 296 404 8.8E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2530 71ce01cc12bb222d0da0427940ae8953 348 Gene3D G3DSA:3.40.190.10 138 323 4.4E-77 T 13-10-2018 Trebr_2530 71ce01cc12bb222d0da0427940ae8953 348 SUPERFAMILY SSF53850 37 338 3.22E-61 T 13-10-2018 Trebr_2530 71ce01cc12bb222d0da0427940ae8953 348 Gene3D G3DSA:3.40.190.10 40 310 4.4E-77 T 13-10-2018 Trebr_2530 71ce01cc12bb222d0da0427940ae8953 348 PIRSF PIRSF002825 1 341 7.1E-72 T 13-10-2018 IPR026045 Ferric binding protein Trebr_2530 71ce01cc12bb222d0da0427940ae8953 348 Pfam PF13343 Bacterial extracellular solute-binding protein 89 296 3.0E-33 T 13-10-2018 Trebr_2032 923e3b6671148dc35452ba35bba71820 308 Gene3D G3DSA:1.10.1060.10 153 265 1.6E-6 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_2032 923e3b6671148dc35452ba35bba71820 308 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 185 196 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2032 923e3b6671148dc35452ba35bba71820 308 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 238 249 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2032 923e3b6671148dc35452ba35bba71820 308 SUPERFAMILY SSF46548 163 256 4.36E-16 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_2032 923e3b6671148dc35452ba35bba71820 308 Pfam PF13534 4Fe-4S dicluster domain 184 253 1.4E-8 T 13-10-2018 Trebr_0676 1f8d87be2ed2f5b3387c1c954faaaa6d 170 Pfam PF13247 4Fe-4S dicluster domain 54 147 1.3E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0676 1f8d87be2ed2f5b3387c1c954faaaa6d 170 SUPERFAMILY SSF54862 4 147 2.09E-30 T 13-10-2018 Trebr_0676 1f8d87be2ed2f5b3387c1c954faaaa6d 170 Gene3D G3DSA:3.30.70.20 31 151 8.5E-22 T 13-10-2018 Trebr_0676 1f8d87be2ed2f5b3387c1c954faaaa6d 170 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_1781 f4154a30888ad0105f348f74de8e0ae1 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 102 1.0E-32 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1781 f4154a30888ad0105f348f74de8e0ae1 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.0E-35 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1781 f4154a30888ad0105f348f74de8e0ae1 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 23.052 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1781 f4154a30888ad0105f348f74de8e0ae1 104 SUPERFAMILY SSF141091 1 102 3.27E-33 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1781 f4154a30888ad0105f348f74de8e0ae1 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 Gene3D G3DSA:1.20.1640.10 198 398 4.3E-13 T 13-10-2018 Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 SUPERFAMILY SSF82866 192 389 2.09E-32 T 13-10-2018 Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 Pfam PF02355 Protein export membrane protein 212 386 6.2E-51 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 190 376 2.2E-49 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 140 378 1.9E-63 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 PRINTS PR01755 Bacterial translocase SecF protein signature 295 313 1.4E-21 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 PRINTS PR01755 Bacterial translocase SecF protein signature 327 342 1.4E-21 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 PRINTS PR01755 Bacterial translocase SecF protein signature 32 47 1.4E-21 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 PRINTS PR01755 Bacterial translocase SecF protein signature 247 261 1.4E-21 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Trebr_0831 4b48ac1e7b0a0fc76862c88bf2d61cc9 415 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 5 387 23.852 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Trebr_1964 038f5edbfffed21d3351e7ce05e8938e 432 Gene3D G3DSA:3.30.830.10 4 212 6.4E-53 T 13-10-2018 Trebr_1964 038f5edbfffed21d3351e7ce05e8938e 432 Gene3D G3DSA:3.30.830.10 221 412 7.0E-38 T 13-10-2018 Trebr_1964 038f5edbfffed21d3351e7ce05e8938e 432 Pfam PF05193 Peptidase M16 inactive domain 166 342 2.9E-25 T 13-10-2018 IPR007863 Peptidase M16, C-terminal Trebr_1964 038f5edbfffed21d3351e7ce05e8938e 432 SUPERFAMILY SSF63411 226 409 2.07E-31 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_1964 038f5edbfffed21d3351e7ce05e8938e 432 SUPERFAMILY SSF63411 5 205 2.57E-46 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_1964 038f5edbfffed21d3351e7ce05e8938e 432 Pfam PF00675 Insulinase (Peptidase family M16) 21 159 5.9E-32 T 13-10-2018 IPR011765 Peptidase M16, N-terminal Trebr_2117 1d4814795b1e8d01cb1231853c726db6 591 Pfam PF06100 MCRA family 23 521 6.1E-225 T 13-10-2018 IPR010354 Oleate hydratase GO:0006631|GO:0050151|GO:0071949 Trebr_2117 1d4814795b1e8d01cb1231853c726db6 591 Gene3D G3DSA:3.50.50.60 181 383 6.1E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2117 1d4814795b1e8d01cb1231853c726db6 591 Gene3D G3DSA:3.50.50.60 1 131 2.4E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2117 1d4814795b1e8d01cb1231853c726db6 591 Gene3D G3DSA:3.50.50.60 449 538 2.6E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2117 1d4814795b1e8d01cb1231853c726db6 591 SUPERFAMILY SSF51905 26 264 4.75E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2103 ad190aea81443ea2e8068f4c99839852 70 Pfam PF04324 BFD-like [2Fe-2S] binding domain 12 65 4.3E-9 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Trebr_2103 ad190aea81443ea2e8068f4c99839852 70 Gene3D G3DSA:1.10.10.1100 11 70 8.5E-8 T 13-10-2018 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 SUPERFAMILY SSF51971 176 431 1.18E-63 T 13-10-2018 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 SUPERFAMILY SSF46548 35 188 3.24E-36 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 Gene3D G3DSA:3.50.50.60 316 499 1.9E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 Gene3D G3DSA:3.50.50.60 178 312 4.8E-36 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 52 165 2.2E-42 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 179 201 2.2E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 340 2.2E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 478 497 2.2E-16 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 TIGRFAM TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric 49 497 1.7E-203 T 13-10-2018 IPR006004 Glutamate synthase (NADPH), homotetrameric KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 Gene3D G3DSA:1.10.1060.10 35 177 1.7E-42 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 180 199 2.1E-19 T 13-10-2018 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 320 338 2.1E-19 T 13-10-2018 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 423 439 2.1E-19 T 13-10-2018 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 451 473 2.1E-19 T 13-10-2018 Trebr_2325 24475f8c09d4866ffbec1878a1d95078 499 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 178 486 3.0E-35 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_1081 d17df776b73112c96c7a59e01dd65076 400 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 6 394 1.4E-128 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Trebr_1081 d17df776b73112c96c7a59e01dd65076 400 PIRSF PIRSF000521 175 397 1.1E-30 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Trebr_1081 d17df776b73112c96c7a59e01dd65076 400 PIRSF PIRSF000521 1 165 1.6E-13 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Trebr_1081 d17df776b73112c96c7a59e01dd65076 400 Gene3D G3DSA:3.90.1150.10 13 387 3.2E-132 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1081 d17df776b73112c96c7a59e01dd65076 400 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Trebr_1081 d17df776b73112c96c7a59e01dd65076 400 Gene3D G3DSA:3.40.640.10 48 305 3.2E-132 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1081 d17df776b73112c96c7a59e01dd65076 400 SUPERFAMILY SSF53383 7 394 7.06E-113 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1081 d17df776b73112c96c7a59e01dd65076 400 Pfam PF00202 Aminotransferase class-III 5 394 5.7E-101 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Trebr_0116 56449781988acc832b519b1702faad05 819 Gene3D G3DSA:1.10.8.500 502 553 1.2E-6 T 13-10-2018 Trebr_0116 56449781988acc832b519b1702faad05 819 SMART SM00044 551 750 1.3E-36 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_0116 56449781988acc832b519b1702faad05 819 SMART SM00304 503 555 1.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0116 56449781988acc832b519b1702faad05 819 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 585 765 4.9E-38 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_0116 56449781988acc832b519b1702faad05 819 Pfam PF00672 HAMP domain 504 548 1.4E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0116 56449781988acc832b519b1702faad05 819 Gene3D G3DSA:3.30.70.1230 574 777 3.1E-70 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0116 56449781988acc832b519b1702faad05 819 Gene3D G3DSA:3.30.450.20 381 485 8.0E-7 T 13-10-2018 Trebr_0116 56449781988acc832b519b1702faad05 819 SUPERFAMILY SSF158472 504 552 4.18E-6 T 13-10-2018 Trebr_0116 56449781988acc832b519b1702faad05 819 SUPERFAMILY SSF55073 579 769 8.63E-62 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_2029 c3babf949fb30225b7cab04bd4b4e22b 224 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Trebr_2029 c3babf949fb30225b7cab04bd4b4e22b 224 SUPERFAMILY SSF46548 59 165 6.93E-14 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_2029 c3babf949fb30225b7cab04bd4b4e22b 224 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 148 159 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2029 c3babf949fb30225b7cab04bd4b4e22b 224 Pfam PF12838 4Fe-4S dicluster domain 109 162 3.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2029 c3babf949fb30225b7cab04bd4b4e22b 224 Gene3D G3DSA:3.10.20.30 4 77 3.9E-5 T 13-10-2018 IPR012675 Beta-grasp domain superfamily Trebr_2029 c3babf949fb30225b7cab04bd4b4e22b 224 Gene3D G3DSA:1.10.1060.10 98 173 1.7E-14 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_2029 c3babf949fb30225b7cab04bd4b4e22b 224 SUPERFAMILY SSF54292 2 79 3.15E-11 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Trebr_1754 05b84a711e985f85ec513404d09f2314 753 SUPERFAMILY SSF54665 19 117 1.96E-15 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Trebr_1754 05b84a711e985f85ec513404d09f2314 753 SMART SM01008 8 117 1.8E-7 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Trebr_1754 05b84a711e985f85ec513404d09f2314 753 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 95 2.3E-7 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Trebr_1754 05b84a711e985f85ec513404d09f2314 753 SUPERFAMILY SSF56003 199 731 7.72E-64 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Trebr_1754 05b84a711e985f85ec513404d09f2314 753 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 198 669 4.1E-46 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Trebr_2330 f90755fd6289cdc8edb8d4be1929eced 213 SUPERFAMILY SSF144091 14 197 2.75E-37 T 13-10-2018 Trebr_2330 f90755fd6289cdc8edb8d4be1929eced 213 Gene3D G3DSA:1.20.1540.10 13 204 1.3E-32 T 13-10-2018 IPR035952 Rhomboid-like superfamily Trebr_2330 f90755fd6289cdc8edb8d4be1929eced 213 Pfam PF01694 Rhomboid family 52 198 3.1E-32 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 74 4.0E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 SUPERFAMILY SSF46785 7 88 7.18E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 Gene3D G3DSA:1.20.120.530 81 213 2.0E-21 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 Pfam PF07729 FCD domain 88 207 7.5E-21 T 13-10-2018 IPR011711 GntR, C-terminal Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 SMART SM00345 16 74 1.2E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 SMART SM00895 84 208 1.8E-12 T 13-10-2018 IPR011711 GntR, C-terminal Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 8.5E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 8.5E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 Gene3D G3DSA:1.10.10.10 8 75 2.3E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0098 843ce6fe43f9f1f718592488bbbb7b31 241 SUPERFAMILY SSF48008 82 214 1.7E-21 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Trebr_1221 9106406e9f44987d0dd3ef5f05b9fa83 369 SUPERFAMILY SSF53807 37 359 8.24E-55 T 13-10-2018 Trebr_1221 9106406e9f44987d0dd3ef5f05b9fa83 369 Gene3D G3DSA:3.40.50.1980 26 365 1.3E-82 T 13-10-2018 Trebr_1221 9106406e9f44987d0dd3ef5f05b9fa83 369 Pfam PF01497 Periplasmic binding protein 103 297 1.4E-17 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain Trebr_0840 c6ed0da71d2d66a3cc81d6fd5409edaa 172 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 2 169 5.0E-58 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 Trebr_0840 c6ed0da71d2d66a3cc81d6fd5409edaa 172 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 2 169 34.904 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 Trebr_0840 c6ed0da71d2d66a3cc81d6fd5409edaa 172 Pfam PF00156 Phosphoribosyl transferase domain 39 140 1.3E-15 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Trebr_0840 c6ed0da71d2d66a3cc81d6fd5409edaa 172 Gene3D G3DSA:3.40.50.2020 1 171 1.8E-59 T 13-10-2018 Trebr_0840 c6ed0da71d2d66a3cc81d6fd5409edaa 172 SUPERFAMILY SSF53271 5 160 2.49E-46 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like Trebr_2136 40b59f0c32a6246781eae33f81ab9c14 434 Gene3D G3DSA:3.10.580.10 199 347 8.5E-43 T 13-10-2018 Trebr_2136 40b59f0c32a6246781eae33f81ab9c14 434 Pfam PF01595 Domain of unknown function DUF21 27 203 6.4E-48 T 13-10-2018 IPR002550 CNNM, transmembrane domain Trebr_2136 40b59f0c32a6246781eae33f81ab9c14 434 SMART SM01091 354 432 1.5E-17 T 13-10-2018 IPR005170 Transporter-associated domain Trebr_2136 40b59f0c32a6246781eae33f81ab9c14 434 Gene3D G3DSA:3.30.465.10 351 434 3.6E-17 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Trebr_2136 40b59f0c32a6246781eae33f81ab9c14 434 Pfam PF00571 CBS domain 284 337 0.0018 T 13-10-2018 IPR000644 CBS domain Trebr_2136 40b59f0c32a6246781eae33f81ab9c14 434 Pfam PF03471 Transporter associated domain 355 430 3.0E-16 T 13-10-2018 IPR005170 Transporter-associated domain Trebr_2136 40b59f0c32a6246781eae33f81ab9c14 434 SUPERFAMILY SSF54631 206 339 7.07E-26 T 13-10-2018 Trebr_2136 40b59f0c32a6246781eae33f81ab9c14 434 SUPERFAMILY SSF56176 353 431 1.28E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 Gene3D G3DSA:3.30.450.20 159 283 9.4E-17 T 13-10-2018 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 492 636 4.4E-27 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 SMART SM00283 414 661 9.1E-42 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 Pfam PF02743 Cache domain 58 279 7.5E-17 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 SUPERFAMILY SSF58104 339 444 1.1E-9 T 13-10-2018 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 Gene3D G3DSA:1.10.287.950 378 703 6.4E-45 T 13-10-2018 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 Gene3D G3DSA:1.20.1480.50 284 376 2.3E-7 T 13-10-2018 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 SUPERFAMILY SSF58104 420 667 1.09E-41 T 13-10-2018 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 435 464 2.7E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 589 618 2.7E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 541 570 2.7E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 512 539 2.7E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 SMART SM00304 317 371 2.8E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0456 0fa0fbf8ebe4ea0debe931ff41421ed6 704 Pfam PF00672 HAMP domain 320 367 2.4E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_1653 04fbe1c8c26ccb5b75c2243c0f7ec882 389 Gene3D G3DSA:3.40.50.2000 22 382 2.1E-44 T 13-10-2018 Trebr_1653 04fbe1c8c26ccb5b75c2243c0f7ec882 389 Pfam PF00534 Glycosyl transferases group 1 210 345 1.8E-28 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_1653 04fbe1c8c26ccb5b75c2243c0f7ec882 389 Gene3D G3DSA:3.40.50.2000 196 371 2.1E-44 T 13-10-2018 Trebr_1653 04fbe1c8c26ccb5b75c2243c0f7ec882 389 SUPERFAMILY SSF53756 9 387 1.3E-56 T 13-10-2018 Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 SUPERFAMILY SSF52467 203 365 1.41E-53 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 Gene3D G3DSA:3.40.50.970 1 175 1.0E-67 T 13-10-2018 Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 SUPERFAMILY SSF52518 373 566 2.76E-70 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 Gene3D G3DSA:3.40.50.1220 201 364 1.1E-54 T 13-10-2018 Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 433 452 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 566 3.3E-223 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 Gene3D G3DSA:3.40.50.970 367 567 3.1E-71 T 13-10-2018 Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 SUPERFAMILY SSF52518 1 176 2.76E-62 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 397 544 2.1E-51 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 168 2.4E-54 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Trebr_0758 a2a5f69bdae934ed7210fa1455f82c2a 569 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 206 341 4.1E-45 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Trebr_0947 526d0076dc674475b2d3453cf18ba6aa 330 PIRSF PIRSF004486 1 315 2.2E-106 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Trebr_0947 526d0076dc674475b2d3453cf18ba6aa 330 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 314 34.463 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Trebr_0947 526d0076dc674475b2d3453cf18ba6aa 330 Pfam PF01795 MraW methylase family 3 313 9.6E-115 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Trebr_0947 526d0076dc674475b2d3453cf18ba6aa 330 Gene3D G3DSA:1.10.150.170 115 220 3.1E-89 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Trebr_0947 526d0076dc674475b2d3453cf18ba6aa 330 SUPERFAMILY SSF81799 117 218 2.09E-32 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Trebr_0947 526d0076dc674475b2d3453cf18ba6aa 330 Gene3D G3DSA:3.40.50.150 5 310 3.1E-89 T 13-10-2018 Trebr_0947 526d0076dc674475b2d3453cf18ba6aa 330 SUPERFAMILY SSF53335 5 314 8.06E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0947 526d0076dc674475b2d3453cf18ba6aa 330 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 313 2.4E-97 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 SUPERFAMILY SSF51261 84 318 3.19E-55 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 Gene3D G3DSA:3.10.350.10 131 181 4.8E-6 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 Gene3D G3DSA:3.10.350.10 70 130 6.8E-12 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 Pfam PF01551 Peptidase family M23 222 316 5.6E-33 T 13-10-2018 IPR016047 Peptidase M23 Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 Gene3D G3DSA:2.70.70.10 182 321 1.2E-47 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 SMART SM00257 133 178 0.4 T 13-10-2018 IPR018392 LysM domain Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 SMART SM00257 83 127 6.4E-10 T 13-10-2018 IPR018392 LysM domain Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 Pfam PF01476 LysM domain 84 127 1.8E-11 T 13-10-2018 IPR018392 LysM domain Trebr_0725 330310253bd6ab99a3a4460aca96e0fc 321 Pfam PF01476 LysM domain 134 178 0.0086 T 13-10-2018 IPR018392 LysM domain Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 Gene3D G3DSA:2.60.40.10 344 435 2.7E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 TIGRFAM TIGR02543 List_Bact_rpt: repeat, TIGR02543 family 66 101 5.9E-5 T 13-10-2018 IPR013378 Listeria/Bacterioides repeat Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 Gene3D G3DSA:3.10.20.660 185 257 2.8E-8 T 13-10-2018 Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 Gene3D G3DSA:3.10.20.660 34 103 4.9E-14 T 13-10-2018 Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 Pfam PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) 37 98 1.6E-13 T 13-10-2018 IPR013378 Listeria/Bacterioides repeat Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 Pfam PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) 104 182 2.7E-4 T 13-10-2018 IPR013378 Listeria/Bacterioides repeat Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 Pfam PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) 189 252 2.9E-8 T 13-10-2018 IPR013378 Listeria/Bacterioides repeat Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 SMART SM00060 348 422 9.0E-5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 SUPERFAMILY SSF49265 347 416 6.38E-8 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_2407 7c5b132736ecffa9fd249ed8c3b91201 960 Pfam PF03415 Clostripain family 441 800 9.6E-34 T 13-10-2018 IPR005077 Peptidase C11, clostripain Trebr_0627 cf85b1859a41c2e3a27b207b63a55d52 278 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 1 277 34.217 T 13-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Trebr_0627 cf85b1859a41c2e3a27b207b63a55d52 278 Pfam PF02649 Type I GTP cyclohydrolase folE2 1 272 1.2E-98 T 13-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Trebr_0627 cf85b1859a41c2e3a27b207b63a55d52 278 Gene3D G3DSA:3.10.270.10 1 277 3.0E-95 T 13-10-2018 Trebr_1916 e29c7704d43420cfda3a246841fafe75 418 Hamap MF_00929 Cellobiose 2-epimerase. 1 417 38.253 T 13-10-2018 IPR028584 Cellobiose 2-epimerase GO:0047736 MetaCyc: PWY-7456 Trebr_1916 e29c7704d43420cfda3a246841fafe75 418 SUPERFAMILY SSF48208 5 416 6.8E-84 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_1916 e29c7704d43420cfda3a246841fafe75 418 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 36 398 4.5E-28 T 13-10-2018 Trebr_1916 e29c7704d43420cfda3a246841fafe75 418 Gene3D G3DSA:1.50.10.10 4 418 7.8E-140 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_1286 2fe5c553184bb892675d7d9e81788187 610 Gene3D G3DSA:3.40.50.300 1 216 4.2E-68 T 13-10-2018 Trebr_1286 2fe5c553184bb892675d7d9e81788187 610 Pfam PF00270 DEAD/DEAH box helicase 25 195 4.4E-47 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_1286 2fe5c553184bb892675d7d9e81788187 610 Gene3D G3DSA:3.40.50.300 217 383 4.9E-51 T 13-10-2018 Trebr_1286 2fe5c553184bb892675d7d9e81788187 610 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 150 158 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Trebr_1286 2fe5c553184bb892675d7d9e81788187 610 SMART SM00490 257 338 1.8E-29 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_1286 2fe5c553184bb892675d7d9e81788187 610 SMART SM00487 20 221 8.7E-53 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_1286 2fe5c553184bb892675d7d9e81788187 610 SUPERFAMILY SSF52540 71 359 2.37E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1286 2fe5c553184bb892675d7d9e81788187 610 Pfam PF00271 Helicase conserved C-terminal domain 230 338 8.2E-30 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_2122 bde2e9cdd033a5a3420423d3a75a627b 196 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2 189 5.4E-33 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Trebr_2122 bde2e9cdd033a5a3420423d3a75a627b 196 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 53 75 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Trebr_2122 bde2e9cdd033a5a3420423d3a75a627b 196 Gene3D G3DSA:1.20.120.1760 4 183 1.0E-7 T 13-10-2018 Trebr_2122 bde2e9cdd033a5a3420423d3a75a627b 196 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 75 9.0E-13 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Trebr_2122 bde2e9cdd033a5a3420423d3a75a627b 196 PIRSF PIRSF000847 1 196 9.8E-43 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Trebr_0465 4e3f186d029753769e468f707e061db3 577 Pfam PF00890 FAD binding domain 136 556 5.8E-96 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Trebr_0465 4e3f186d029753769e468f707e061db3 577 TIGRFAM TIGR01813 flavo_cyto_c: flavocytochrome c 136 568 8.6E-153 T 13-10-2018 IPR010960 Flavocytochrome c GO:0000104|GO:0055114 Trebr_0465 4e3f186d029753769e468f707e061db3 577 SUPERFAMILY SSF56425 371 516 1.79E-46 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Trebr_0465 4e3f186d029753769e468f707e061db3 577 Gene3D G3DSA:3.90.700.10 368 512 4.1E-169 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Trebr_0465 4e3f186d029753769e468f707e061db3 577 Pfam PF04205 FMN-binding domain 40 111 4.1E-11 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Trebr_0465 4e3f186d029753769e468f707e061db3 577 SMART SM00900 40 114 1.0E-11 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Trebr_0465 4e3f186d029753769e468f707e061db3 577 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 156 3.0E-6 T 13-10-2018 Trebr_0465 4e3f186d029753769e468f707e061db3 577 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 520 542 3.0E-6 T 13-10-2018 Trebr_0465 4e3f186d029753769e468f707e061db3 577 SUPERFAMILY SSF51905 128 576 2.6E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0465 4e3f186d029753769e468f707e061db3 577 Gene3D G3DSA:3.50.50.60 135 570 4.1E-169 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 Pfam PF00701 Dihydrodipicolinate synthetase family 4 298 4.3E-77 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 Gene3D G3DSA:3.20.20.70 1 302 4.8E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 7 298 1.4E-87 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 2.2E-26 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 137 154 2.2E-26 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 113 129 2.2E-26 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 81 99 2.2E-26 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 SUPERFAMILY SSF51569 1 301 4.08E-90 T 13-10-2018 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 SMART SM01130 3 301 4.0E-119 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 299 56.871 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Trebr_0647 7b18f7a53127ce92ec96c852f6dc678b 302 PIRSF PIRSF001365 1 302 7.8E-80 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_0812 40312ca865f0c47f41873ec2cdf8182e 534 Gene3D G3DSA:3.20.20.70 3 311 8.6E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0812 40312ca865f0c47f41873ec2cdf8182e 534 SUPERFAMILY SSF51569 1 262 8.55E-35 T 13-10-2018 Trebr_0812 40312ca865f0c47f41873ec2cdf8182e 534 Pfam PF00682 HMGL-like 6 260 8.5E-22 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Trebr_0179 9c4646b0f01d5ab948a991f362be7abd 216 SUPERFAMILY SSF54211 98 199 1.1E-24 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_0179 9c4646b0f01d5ab948a991f362be7abd 216 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 44 193 3.5E-52 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Trebr_0179 9c4646b0f01d5ab948a991f362be7abd 216 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 13 215 37.41 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Trebr_0179 9c4646b0f01d5ab948a991f362be7abd 216 SUPERFAMILY SSF54211 13 95 2.4E-28 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_0179 9c4646b0f01d5ab948a991f362be7abd 216 Gene3D G3DSA:3.30.230.40 2 100 2.2E-33 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Trebr_0179 9c4646b0f01d5ab948a991f362be7abd 216 Gene3D G3DSA:3.30.230.40 101 215 1.4E-33 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Trebr_0179 9c4646b0f01d5ab948a991f362be7abd 216 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 72 85 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SUPERFAMILY SSF52440 584 701 3.31E-47 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1106 1430 32.019 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SUPERFAMILY SSF48108 394 565 2.22E-30 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SUPERFAMILY SSF56059 128 399 3.54E-105 T 13-10-2018 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 863 870 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SMART SM00851 982 1070 9.4E-25 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SUPERFAMILY SSF52440 1 127 2.01E-44 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Gene3D G3DSA:3.30.470.20 691 962 2.8E-97 T 13-10-2018 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Gene3D G3DSA:3.40.50.20 1 116 1.9E-43 T 13-10-2018 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.2E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.2E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 2.2E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 2.2E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 2.2E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 2.2E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 2.2E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SUPERFAMILY SSF54506 1298 1429 1.38E-38 T 13-10-2018 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SUPERFAMILY SSF52335 962 1086 8.9E-27 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Pfam PF01678 Diaminopimelate epimerase 1310 1421 2.0E-20 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Pfam PF01678 Diaminopimelate epimerase 1108 1242 2.7E-19 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 4 1081 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 559 4.6E-36 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Gene3D G3DSA:3.30.470.20 119 401 4.5E-124 T 13-10-2018 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SMART SM01096 420 559 1.1E-27 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SUPERFAMILY SSF54506 1106 1249 2.04E-30 T 13-10-2018 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Pfam PF02142 MGS-like domain 982 1070 3.9E-16 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1091 12.309 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Gene3D G3DSA:3.40.50.20 536 688 1.3E-59 T 13-10-2018 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1301 1428 3.3E-37 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 1.3E-75 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 699 899 6.5E-32 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Gene3D G3DSA:1.10.1030.10 405 510 1.5E-20 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 SUPERFAMILY SSF56059 699 960 3.71E-93 T 13-10-2018 Trebr_0248 578ceb32b74d90e070fe0d91e4978f82 1430 Gene3D G3DSA:3.40.50.1380 964 1099 2.6E-31 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 SUPERFAMILY SSF46785 25 118 3.39E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 73 88 8.1E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 8.1E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 88 103 8.1E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 71 8.1E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 SMART SM00418 39 117 2.3E-24 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 62 80 - T 13-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 Pfam PF01022 Bacterial regulatory protein, arsR family 46 91 2.4E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2070 3f798cd1ac7ba0cfeac39062a8d5f9e6 121 Gene3D G3DSA:1.10.10.10 8 121 7.6E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0839 1f55233d888cf6f5a02364a5ce6d36ca 501 SUPERFAMILY SSF53383 21 489 4.08E-145 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0839 1f55233d888cf6f5a02364a5ce6d36ca 501 PIRSF PIRSF000412 9 492 3.4E-177 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Trebr_0839 1f55233d888cf6f5a02364a5ce6d36ca 501 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 30 488 43.676 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Trebr_0839 1f55233d888cf6f5a02364a5ce6d36ca 501 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 279 295 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Trebr_0839 1f55233d888cf6f5a02364a5ce6d36ca 501 Pfam PF00464 Serine hydroxymethyltransferase 33 135 1.8E-30 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Trebr_0839 1f55233d888cf6f5a02364a5ce6d36ca 501 Pfam PF00464 Serine hydroxymethyltransferase 168 441 1.2E-91 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 3 172 30.281 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 ProSitePatterns PS00938 Initiation factor 3 signature. 60 73 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 SUPERFAMILY SSF55200 85 173 1.44E-30 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 86 170 4.5E-35 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 SUPERFAMILY SSF54364 6 80 4.45E-30 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 Gene3D G3DSA:3.10.20.80 4 80 7.1E-34 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 9 172 6.3E-68 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 Gene3D G3DSA:3.30.110.10 81 173 2.6E-35 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Trebr_0940 cdcf74b475321cd0ec209b698b535a53 173 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 9 77 6.5E-33 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Trebr_0433 682931218eb3f3c75c8335bca9e3df2d 659 SMART SM00044 437 638 3.6E-13 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_0433 682931218eb3f3c75c8335bca9e3df2d 659 Pfam PF07695 7TM diverse intracellular signalling 226 423 1.1E-21 T 13-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Trebr_0433 682931218eb3f3c75c8335bca9e3df2d 659 SUPERFAMILY SSF55073 470 657 4.08E-49 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0433 682931218eb3f3c75c8335bca9e3df2d 659 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 474 654 1.6E-33 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_0433 682931218eb3f3c75c8335bca9e3df2d 659 Gene3D G3DSA:3.30.70.1230 467 659 3.0E-50 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1688 a687175f4ac97e598a99927675d9805a 80 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 9 76 1.6E-16 T 13-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 Trebr_1688 a687175f4ac97e598a99927675d9805a 80 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 6 79 9.1E-16 T 13-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 SMART SM00387 24 153 8.2E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 22 31 - T 13-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 PRINTS PR00775 90kDa heat shock protein signature 117 139 2.7E-56 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 PRINTS PR00775 90kDa heat shock protein signature 90 107 2.7E-56 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 PRINTS PR00775 90kDa heat shock protein signature 72 89 2.7E-56 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 PRINTS PR00775 90kDa heat shock protein signature 23 45 2.7E-56 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 PRINTS PR00775 90kDa heat shock protein signature 180 197 2.7E-56 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 PRINTS PR00775 90kDa heat shock protein signature 2 22 2.7E-56 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 PRINTS PR00775 90kDa heat shock protein signature 198 216 2.7E-56 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 SUPERFAMILY SSF110942 547 660 4.32E-35 T 13-10-2018 IPR037196 HSP90, C-terminal domain Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 PIRSF PIRSF002583 1 662 2.7E-197 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 Gene3D G3DSA:3.30.565.10 1 234 4.9E-69 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 Gene3D G3DSA:3.30.230.80 256 433 1.3E-60 T 13-10-2018 Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 Gene3D G3DSA:1.20.120.790 529 661 4.1E-46 T 13-10-2018 IPR037196 HSP90, C-terminal domain Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 168 2.1E-12 T 13-10-2018 Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 Gene3D G3DSA:3.40.50.11260 434 525 1.2E-27 T 13-10-2018 Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 SUPERFAMILY SSF55874 2 221 2.74E-58 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 661 29.397 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 Pfam PF00183 Hsp90 protein 226 660 7.9E-120 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Trebr_2430 494d1b9a7ac073f3e3c3fdce7e7fd579 662 SUPERFAMILY SSF54211 244 523 7.59E-83 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_0653 b598c186f305b9d9d5bd16217a93c7e2 244 ProSitePatterns PS01058 SAICAR synthetase signature 2. 180 188 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0653 b598c186f305b9d9d5bd16217a93c7e2 244 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 10 240 3.7E-78 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 Trebr_0653 b598c186f305b9d9d5bd16217a93c7e2 244 SUPERFAMILY SSF56104 7 243 8.17E-85 T 13-10-2018 Trebr_0653 b598c186f305b9d9d5bd16217a93c7e2 244 ProSitePatterns PS01057 SAICAR synthetase signature 1. 93 107 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0653 b598c186f305b9d9d5bd16217a93c7e2 244 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 11 242 33.327 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0653 b598c186f305b9d9d5bd16217a93c7e2 244 Pfam PF01259 SAICAR synthetase 14 239 1.3E-68 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Trebr_0653 b598c186f305b9d9d5bd16217a93c7e2 244 Gene3D G3DSA:3.30.200.20 14 239 3.4E-97 T 13-10-2018 Trebr_0653 b598c186f305b9d9d5bd16217a93c7e2 244 Gene3D G3DSA:3.30.470.20 92 228 3.4E-97 T 13-10-2018 Trebr_0598 88b0c58e185361741928abbf7ae034b2 390 Gene3D G3DSA:3.40.50.300 2 240 2.4E-77 T 13-10-2018 Trebr_0598 88b0c58e185361741928abbf7ae034b2 390 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0598 88b0c58e185361741928abbf7ae034b2 390 SUPERFAMILY SSF52540 6 244 4.34E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0598 88b0c58e185361741928abbf7ae034b2 390 Pfam PF00005 ABC transporter 21 163 3.8E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0598 88b0c58e185361741928abbf7ae034b2 390 SUPERFAMILY SSF50331 290 384 1.42E-11 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Trebr_0598 88b0c58e185361741928abbf7ae034b2 390 SMART SM00382 30 213 6.9E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0598 88b0c58e185361741928abbf7ae034b2 390 Pfam PF08402 TOBE domain 303 383 9.3E-13 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 Gene3D G3DSA:3.40.50.720 1 252 3.4E-84 T 13-10-2018 Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 8.6E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.6E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.6E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 4.1E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 4.1E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 4.1E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 4.1E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 4.1E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 4.1E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 SUPERFAMILY SSF51735 6 251 1.53E-79 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 250 7.9E-58 T 13-10-2018 Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 7.1E-119 T 13-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 Trebr_1408 dfec5a4725ad1fa70c54549e0661da01 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Trebr_0176 2b85f89d3f07a42ef43748ee178f4d63 290 SUPERFAMILY SSF48452 166 259 3.48E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0176 2b85f89d3f07a42ef43748ee178f4d63 290 Gene3D G3DSA:1.25.40.10 54 287 2.3E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 Pfam PF00563 EAL domain 336 571 2.3E-68 T 13-10-2018 IPR001633 EAL domain Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 Gene3D G3DSA:3.20.20.450 333 592 1.8E-91 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 162 316 3.3E-29 T 13-10-2018 IPR000160 GGDEF domain Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 Pfam PF00990 Diguanylate cyclase, GGDEF domain 166 314 2.8E-32 T 13-10-2018 IPR000160 GGDEF domain Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 SMART SM00267 155 319 2.2E-39 T 13-10-2018 IPR000160 GGDEF domain Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 Gene3D G3DSA:3.30.70.270 160 332 1.1E-40 T 13-10-2018 Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 SMART SM00052 329 576 3.9E-96 T 13-10-2018 IPR001633 EAL domain Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 SUPERFAMILY SSF141868 335 581 2.88E-82 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_0594 c20e98eebe4ad4b313da40e12db94240 603 SUPERFAMILY SSF55073 171 320 1.1E-33 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1988 591878f618c156e6db76ce6766479ca4 579 Gene3D G3DSA:3.40.50.970 382 573 2.7E-12 T 13-10-2018 Trebr_1988 591878f618c156e6db76ce6766479ca4 579 SUPERFAMILY SSF52518 368 563 7.16E-23 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_1988 591878f618c156e6db76ce6766479ca4 579 Gene3D G3DSA:3.40.50.970 1 183 1.2E-48 T 13-10-2018 Trebr_1988 591878f618c156e6db76ce6766479ca4 579 PIRSF PIRSF006439 1 578 7.8E-148 T 13-10-2018 IPR017721 Indolepyruvate ferredoxin oxidoreductase, alpha subunit GO:0043805|GO:0055114 Trebr_1988 591878f618c156e6db76ce6766479ca4 579 SUPERFAMILY SSF52518 2 213 1.64E-51 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_1988 591878f618c156e6db76ce6766479ca4 579 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 15 180 2.8E-11 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Trebr_1988 591878f618c156e6db76ce6766479ca4 579 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 408 493 7.9E-14 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Trebr_1161 537e3e57be6435f553fdc455c6fa916f 63 Pfam PF01192 RNA polymerase Rpb6 8 59 6.7E-9 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Trebr_1161 537e3e57be6435f553fdc455c6fa916f 63 SUPERFAMILY SSF63562 5 61 4.19E-8 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Trebr_1161 537e3e57be6435f553fdc455c6fa916f 63 SMART SM01409 7 59 1.2E-5 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Trebr_1161 537e3e57be6435f553fdc455c6fa916f 63 Gene3D G3DSA:3.90.940.10 2 63 3.1E-6 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Trebr_1358 21a2b47790b5cdb6aab09831039f916f 283 Gene3D G3DSA:2.40.10.350 184 264 3.4E-36 T 13-10-2018 Trebr_1358 21a2b47790b5cdb6aab09831039f916f 283 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 11 277 9.6E-43 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Trebr_1358 21a2b47790b5cdb6aab09831039f916f 283 Pfam PF04085 rod shape-determining protein MreC 123 276 1.5E-35 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Trebr_1358 21a2b47790b5cdb6aab09831039f916f 283 PIRSF PIRSF038471 1 283 2.0E-47 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Trebr_1358 21a2b47790b5cdb6aab09831039f916f 283 Gene3D G3DSA:2.40.10.340 121 275 3.4E-36 T 13-10-2018 Trebr_0199 ef81ce57e82baa878b4a63f88e3cab1a 159 SUPERFAMILY SSF55729 5 149 5.83E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0199 ef81ce57e82baa878b4a63f88e3cab1a 159 Gene3D G3DSA:3.40.630.30 1 159 1.1E-44 T 13-10-2018 Trebr_0199 ef81ce57e82baa878b4a63f88e3cab1a 159 Pfam PF00583 Acetyltransferase (GNAT) family 37 136 1.6E-16 T 13-10-2018 IPR000182 GNAT domain Trebr_0750 2e2793f681bba040b12e3a95916e5d3a 132 Gene3D G3DSA:3.30.479.10 1 131 8.6E-37 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 Trebr_0750 2e2793f681bba040b12e3a95916e5d3a 132 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 130 1.2E-35 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Trebr_0750 2e2793f681bba040b12e3a95916e5d3a 132 SUPERFAMILY SSF55620 1 130 1.45E-38 T 13-10-2018 Trebr_0750 2e2793f681bba040b12e3a95916e5d3a 132 PIRSF PIRSF006113 1 132 2.6E-27 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Trebr_0750 2e2793f681bba040b12e3a95916e5d3a 132 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 4 99 9.6E-30 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Trebr_0786 49790077475cc53145f20d2ef312683a 529 Pfam PF08308 PEGA domain 40 105 2.6E-13 T 13-10-2018 IPR013229 PEGA Trebr_0786 49790077475cc53145f20d2ef312683a 529 Pfam PF08308 PEGA domain 109 178 8.1E-5 T 13-10-2018 IPR013229 PEGA Trebr_0786 49790077475cc53145f20d2ef312683a 529 Gene3D G3DSA:2.60.40.4070 201 270 3.8E-8 T 13-10-2018 Trebr_0786 49790077475cc53145f20d2ef312683a 529 Pfam PF13860 FlgD Ig-like domain 221 263 2.5E-6 T 13-10-2018 IPR025965 FlgD Ig-like domain Trebr_2546 7307983d8f20a6d0ca8af7eb75ad99f9 260 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 16 218 27.665 T 13-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 Trebr_2546 7307983d8f20a6d0ca8af7eb75ad99f9 260 Pfam PF03932 CutC family 17 216 4.6E-69 T 13-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 Trebr_2546 7307983d8f20a6d0ca8af7eb75ad99f9 260 Gene3D G3DSA:3.20.20.380 15 259 1.8E-84 T 13-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 Trebr_2546 7307983d8f20a6d0ca8af7eb75ad99f9 260 SUPERFAMILY SSF110395 17 258 3.01E-69 T 13-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 Trebr_1677 0d5536b6e53f012431128bfbc478a287 412 Gene3D G3DSA:3.40.190.10 20 410 2.0E-71 T 13-10-2018 Trebr_1677 0d5536b6e53f012431128bfbc478a287 412 SUPERFAMILY SSF53850 28 409 1.66E-66 T 13-10-2018 Trebr_1677 0d5536b6e53f012431128bfbc478a287 412 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 141 158 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 Trebr_1677 0d5536b6e53f012431128bfbc478a287 412 Pfam PF13416 Bacterial extracellular solute-binding protein 51 346 6.8E-37 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2495 fe0fd0db915ae16d7ed981b3f486a535 190 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 65 73 9.9E-12 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Trebr_2495 fe0fd0db915ae16d7ed981b3f486a535 190 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 114 129 9.9E-12 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Trebr_2495 fe0fd0db915ae16d7ed981b3f486a535 190 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 155 171 9.9E-12 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Trebr_2495 fe0fd0db915ae16d7ed981b3f486a535 190 TIGRFAM TIGR00077 lspA: signal peptidase II 23 182 1.7E-30 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Trebr_2495 fe0fd0db915ae16d7ed981b3f486a535 190 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 17 180 14.722 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Trebr_2495 fe0fd0db915ae16d7ed981b3f486a535 190 ProSitePatterns PS00855 Signal peptidases II signature. 117 129 - T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Trebr_2495 fe0fd0db915ae16d7ed981b3f486a535 190 Pfam PF01252 Signal peptidase (SPase) II 26 174 3.0E-29 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 Gene3D G3DSA:3.40.50.300 258 495 4.4E-37 T 13-10-2018 Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 Pfam PF00005 ABC transporter 275 429 9.7E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 SMART SM00382 283 478 0.88 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 SMART SM00382 31 221 1.6E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 Gene3D G3DSA:3.40.50.300 1 247 2.5E-54 T 13-10-2018 Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 SUPERFAMILY SSF52540 273 487 3.85E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 SUPERFAMILY SSF52540 5 234 2.17E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0132 41f122b9d28eec5884d274443beed1dc 500 Pfam PF00005 ABC transporter 22 173 1.5E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0482 5659c4a12156ed4597b4a8d8f7f0c01f 259 SUPERFAMILY SSF69593 31 243 7.59E-8 T 13-10-2018 Trebr_1550 8d0a78747dbf06eabe26f78170c5236d 144 SUPERFAMILY SSF52540 18 121 3.26E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1550 8d0a78747dbf06eabe26f78170c5236d 144 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 134 2.4E-35 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Trebr_1550 8d0a78747dbf06eabe26f78170c5236d 144 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 6 127 1.8E-36 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Trebr_1550 8d0a78747dbf06eabe26f78170c5236d 144 Gene3D G3DSA:3.40.50.300 1 139 4.1E-40 T 13-10-2018 Trebr_1701 6d04d41c9573b8e5cf4a56c89074f637 105 Gene3D G3DSA:1.20.120.610 30 105 3.7E-9 T 13-10-2018 Trebr_1701 6d04d41c9573b8e5cf4a56c89074f637 105 SUPERFAMILY SSF81333 38 103 4.97E-12 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Trebr_1701 6d04d41c9573b8e5cf4a56c89074f637 105 Pfam PF00137 ATP synthase subunit C 43 102 6.9E-14 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Trebr_0635 3d2a5305a451a652443fe8b511f786ce 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 31.097 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid Trebr_0635 3d2a5305a451a652443fe8b511f786ce 130 Gene3D G3DSA:3.30.230.10 4 130 3.5E-47 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_0635 3d2a5305a451a652443fe8b511f786ce 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 Trebr_0635 3d2a5305a451a652443fe8b511f786ce 130 SUPERFAMILY SSF54211 7 130 4.93E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_0635 3d2a5305a451a652443fe8b511f786ce 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.4E-44 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 Trebr_1979 6d4026cff597f072b117d77ed014390e 305 SMART SM00287 233 305 3.9E-6 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type Trebr_1979 6d4026cff597f072b117d77ed014390e 305 Gene3D G3DSA:2.30.30.40 227 304 1.6E-15 T 13-10-2018 Trebr_1979 6d4026cff597f072b117d77ed014390e 305 Pfam PF08239 Bacterial SH3 domain 241 302 5.3E-12 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type Trebr_1016 9425851369f01e0f7ade2bde5ab56130 139 Pfam PF08281 Sigma-70, region 4 80 132 6.4E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Trebr_1016 9425851369f01e0f7ade2bde5ab56130 139 Gene3D G3DSA:1.10.10.10 65 139 4.7E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1016 9425851369f01e0f7ade2bde5ab56130 139 SUPERFAMILY SSF88659 83 138 1.18E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1204 191c897be215c1e39fc937ece9065d69 237 SMART SM00028 181 214 10.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1204 191c897be215c1e39fc937ece9065d69 237 SMART SM00028 112 145 0.0012 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1204 191c897be215c1e39fc937ece9065d69 237 SMART SM00028 36 69 0.076 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1204 191c897be215c1e39fc937ece9065d69 237 SMART SM00028 146 180 320.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1204 191c897be215c1e39fc937ece9065d69 237 Pfam PF13432 Tetratricopeptide repeat 117 176 3.9E-8 T 13-10-2018 Trebr_1204 191c897be215c1e39fc937ece9065d69 237 Pfam PF13432 Tetratricopeptide repeat 7 64 2.4E-5 T 13-10-2018 Trebr_1204 191c897be215c1e39fc937ece9065d69 237 Gene3D G3DSA:1.25.40.10 5 103 1.8E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1204 191c897be215c1e39fc937ece9065d69 237 SUPERFAMILY SSF48452 9 205 4.74E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1204 191c897be215c1e39fc937ece9065d69 237 Gene3D G3DSA:1.25.40.10 104 229 1.4E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1383 28d269729d7862f6749d63edc66bd0e7 428 SUPERFAMILY SSF142019 150 284 1.57E-8 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_1383 28d269729d7862f6749d63edc66bd0e7 428 Gene3D G3DSA:3.30.70.20 333 424 3.5E-5 T 13-10-2018 Trebr_1383 28d269729d7862f6749d63edc66bd0e7 428 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 126 244 1.1E-5 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_1383 28d269729d7862f6749d63edc66bd0e7 428 SUPERFAMILY SSF46548 319 422 1.38E-11 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_1383 28d269729d7862f6749d63edc66bd0e7 428 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 397 408 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_1383 28d269729d7862f6749d63edc66bd0e7 428 Pfam PF13375 RnfC Barrel sandwich hybrid domain 21 98 1.3E-11 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain Trebr_1383 28d269729d7862f6749d63edc66bd0e7 428 Pfam PF10531 SLBB domain 277 325 6.2E-6 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0470 f1fffedd2c150b0f75579944d5d399ea 785 SUPERFAMILY SSF88713 4 187 3.04E-12 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Trebr_0470 f1fffedd2c150b0f75579944d5d399ea 785 Pfam PF01074 Glycosyl hydrolases family 38 N-terminal domain 4 298 3.3E-9 T 13-10-2018 IPR000602 Glycoside hydrolase family 38, N-terminal domain GO:0004559|GO:0006013 Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 Gene3D G3DSA:1.10.10.60 4 54 1.4E-13 T 13-10-2018 Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 Pfam PF06445 GyrI-like small molecule binding domain 127 279 8.7E-22 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 SMART SM00871 127 280 8.6E-28 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 SUPERFAMILY SSF46689 58 109 8.96E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 Pfam PF12833 Helix-turn-helix domain 28 105 1.2E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 Gene3D G3DSA:1.10.10.60 55 106 8.0E-11 T 13-10-2018 Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 SUPERFAMILY SSF55136 127 282 1.67E-22 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 SUPERFAMILY SSF46689 4 55 5.82E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 Gene3D G3DSA:3.20.80.10 127 284 3.8E-37 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_0544 1cd77d2123313753cc206c68205aaa99 285 SMART SM00342 21 103 9.1E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_2226 9df743bbdee7c09ddb21f1c0ea0ed29b 357 Gene3D G3DSA:3.90.25.10 196 345 2.0E-162 T 13-10-2018 Trebr_2226 9df743bbdee7c09ddb21f1c0ea0ed29b 357 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 2 347 2.1E-170 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 Trebr_2226 9df743bbdee7c09ddb21f1c0ea0ed29b 357 SUPERFAMILY SSF51735 2 345 7.54E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2226 9df743bbdee7c09ddb21f1c0ea0ed29b 357 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 2 350 54.046 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 Trebr_2226 9df743bbdee7c09ddb21f1c0ea0ed29b 357 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 340 1.6E-150 T 13-10-2018 IPR016040 NAD(P)-binding domain Trebr_2226 9df743bbdee7c09ddb21f1c0ea0ed29b 357 Gene3D G3DSA:3.40.50.720 4 331 2.0E-162 T 13-10-2018 Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 379 449 1.1E-4 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 SUPERFAMILY SSF52540 15 484 1.25E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 Gene3D G3DSA:1.10.8.60 379 484 4.8E-37 T 13-10-2018 Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 Pfam PF07728 AAA domain (dynein-related subfamily) 62 98 6.5E-6 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 SMART SM01086 379 473 9.0E-19 T 13-10-2018 IPR019489 Clp ATPase, C-terminal Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 Pfam PF07724 AAA domain (Cdc48 subfamily) 240 372 1.0E-37 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 14 487 4.5E-192 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 SMART SM00382 59 376 1.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0960 8f4d7ac942817ae13f115ab07ac15db9 487 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 11 487 41.438 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Trebr_0256 0a54318568b3104f8c1ec03dd8e59ac1 517 Pfam PF00155 Aminotransferase class I and II 149 444 9.2E-8 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_0256 0a54318568b3104f8c1ec03dd8e59ac1 517 Gene3D G3DSA:1.10.10.10 7 79 7.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0256 0a54318568b3104f8c1ec03dd8e59ac1 517 SUPERFAMILY SSF46785 8 93 1.16E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0256 0a54318568b3104f8c1ec03dd8e59ac1 517 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 1.6E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_0256 0a54318568b3104f8c1ec03dd8e59ac1 517 SMART SM00345 20 79 5.2E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_0256 0a54318568b3104f8c1ec03dd8e59ac1 517 SUPERFAMILY SSF53383 107 445 1.43E-50 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0256 0a54318568b3104f8c1ec03dd8e59ac1 517 Gene3D G3DSA:3.40.640.10 111 474 1.4E-81 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0608 889f870d39cfa2faf905abc49d51312d 276 Gene3D G3DSA:3.30.70.330 137 212 8.7E-17 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Trebr_0608 889f870d39cfa2faf905abc49d51312d 276 Pfam PF03880 DbpA RNA binding domain 138 208 1.0E-19 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Trebr_0608 889f870d39cfa2faf905abc49d51312d 276 SUPERFAMILY SSF54928 171 217 2.88E-6 T 13-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 Trebr_1556 853042e5304fb3e3bf75e9e241f9bb89 619 SUPERFAMILY SSF48230 53 337 9.92E-66 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Trebr_1556 853042e5304fb3e3bf75e9e241f9bb89 619 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 52 330 5.9E-70 T 13-10-2018 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical Trebr_1556 853042e5304fb3e3bf75e9e241f9bb89 619 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 378 592 1.7E-27 T 13-10-2018 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 Trebr_1556 853042e5304fb3e3bf75e9e241f9bb89 619 Gene3D G3DSA:2.70.98.10 380 593 1.8E-30 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Trebr_1556 853042e5304fb3e3bf75e9e241f9bb89 619 Gene3D G3DSA:1.50.10.100 18 341 1.2E-87 T 13-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 Trebr_1556 853042e5304fb3e3bf75e9e241f9bb89 619 SUPERFAMILY SSF74650 376 535 1.62E-25 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_0352 087c9ce43878fe671cda55e779813883 418 Pfam PF13186 Iron-sulfur cluster-binding domain 310 355 1.1E-7 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain Trebr_0352 087c9ce43878fe671cda55e779813883 418 Pfam PF04055 Radical SAM superfamily 89 221 2.8E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0352 087c9ce43878fe671cda55e779813883 418 SUPERFAMILY SSF102114 82 349 2.35E-51 T 13-10-2018 Trebr_0352 087c9ce43878fe671cda55e779813883 418 Pfam PF13394 4Fe-4S single cluster domain 87 151 5.0E-5 T 13-10-2018 Trebr_0352 087c9ce43878fe671cda55e779813883 418 Gene3D G3DSA:3.20.20.70 82 357 5.1E-44 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0352 087c9ce43878fe671cda55e779813883 418 PIRSF PIRSF037420 68 365 7.7E-41 T 13-10-2018 IPR017200 Coenzyme PQQ synthesis protein E Trebr_1608 11327ce7d5df86162f5ba37039efd026 216 SUPERFAMILY SSF51735 85 207 2.1E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1608 11327ce7d5df86162f5ba37039efd026 216 Gene3D G3DSA:1.10.10.10 1 79 3.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1608 11327ce7d5df86162f5ba37039efd026 216 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 2 210 28.304 T 13-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 Trebr_1608 11327ce7d5df86162f5ba37039efd026 216 Pfam PF02629 CoA binding domain 84 179 7.4E-23 T 13-10-2018 IPR003781 CoA-binding GO:0048037 Trebr_1608 11327ce7d5df86162f5ba37039efd026 216 Pfam PF06971 Putative DNA-binding protein N-terminus 5 53 9.5E-15 T 13-10-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 Trebr_1608 11327ce7d5df86162f5ba37039efd026 216 SUPERFAMILY SSF46785 10 80 3.54E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1608 11327ce7d5df86162f5ba37039efd026 216 Gene3D G3DSA:3.40.50.720 80 213 5.6E-40 T 13-10-2018 Trebr_1608 11327ce7d5df86162f5ba37039efd026 216 SMART SM00881 80 181 3.2E-13 T 13-10-2018 IPR003781 CoA-binding GO:0048037 Trebr_1054 db38ab9fd0ea11ac8965991f1dea4bf6 485 Pfam PF00474 Sodium:solute symporter family 31 434 7.0E-61 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Trebr_1054 db38ab9fd0ea11ac8965991f1dea4bf6 485 Gene3D G3DSA:1.20.1730.10 6 484 3.7E-82 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily Trebr_1054 db38ab9fd0ea11ac8965991f1dea4bf6 485 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 31 434 8.0E-59 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 SMART SM01134 69 229 3.2E-54 T 13-10-2018 Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 Gene3D G3DSA:1.10.10.10 1 54 3.9E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.2E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.2E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 Pfam PF00455 DeoR C terminal sensor domain 71 226 3.4E-45 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 SMART SM00420 6 58 1.2E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 3.4E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 SUPERFAMILY SSF46785 5 72 1.68E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0660 b8f154c236c662475eca2b5c8a1e3fa2 248 SUPERFAMILY SSF100950 70 227 9.42E-28 T 13-10-2018 IPR037171 NagB/RpiA transferase-like Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 SUPERFAMILY SSF51905 141 309 1.55E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 1.7E-17 T 13-10-2018 Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 1.7E-17 T 13-10-2018 Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 1.7E-17 T 13-10-2018 Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 1.7E-17 T 13-10-2018 Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 Gene3D G3DSA:3.50.50.60 111 238 2.1E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 301 6.5E-55 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 Gene3D G3DSA:3.50.50.60 4 308 2.1E-86 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 SUPERFAMILY SSF51905 2 189 2.21E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 144 169 1.7E-9 T 13-10-2018 Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 21 1.7E-9 T 13-10-2018 Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 1.7E-9 T 13-10-2018 Trebr_0677 12c0d43a9529e40f329f24664f584b10 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 1.7E-9 T 13-10-2018 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 Pfam PF00813 FliP family 77 271 7.6E-72 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 197 209 1.7E-16 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 133 145 1.7E-16 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 145 159 1.7E-16 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 73 82 1.7E-16 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 265 275 1.7E-16 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 252 264 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 204 224 4.1E-62 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 75 94 4.1E-62 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 114 133 4.1E-62 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 225 246 4.1E-62 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 94 114 4.1E-62 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 249 274 4.1E-62 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Trebr_1597 e63e01c0df0b0e96eab4168c1c61033e 277 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 77 274 7.2E-82 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Trebr_0523 0529c310ab780832aa1dffba7533aeb4 191 Gene3D G3DSA:1.10.1740.10 11 130 1.9E-28 T 13-10-2018 Trebr_0523 0529c310ab780832aa1dffba7533aeb4 191 Gene3D G3DSA:1.10.10.10 131 189 1.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0523 0529c310ab780832aa1dffba7533aeb4 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 187 2.4E-29 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Trebr_0523 0529c310ab780832aa1dffba7533aeb4 191 Pfam PF04542 Sigma-70 region 2 36 102 2.4E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_0523 0529c310ab780832aa1dffba7533aeb4 191 Pfam PF08281 Sigma-70, region 4 131 182 1.9E-13 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Trebr_0523 0529c310ab780832aa1dffba7533aeb4 191 SUPERFAMILY SSF88946 17 120 3.77E-25 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_0523 0529c310ab780832aa1dffba7533aeb4 191 SUPERFAMILY SSF88659 120 187 7.66E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_0493 658b1fc6dcb33e98162f2fac4d538292 158 SUPERFAMILY SSF55729 16 135 1.29E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0493 658b1fc6dcb33e98162f2fac4d538292 158 Pfam PF00583 Acetyltransferase (GNAT) family 48 138 8.1E-7 T 13-10-2018 IPR000182 GNAT domain Trebr_0493 658b1fc6dcb33e98162f2fac4d538292 158 Gene3D G3DSA:3.40.630.30 3 138 5.8E-13 T 13-10-2018 Trebr_0894 635712e7d08d892d83e28e5832c57ab5 384 SUPERFAMILY SSF55073 229 376 2.67E-31 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0894 635712e7d08d892d83e28e5832c57ab5 384 Pfam PF00990 Diguanylate cyclase, GGDEF domain 227 376 1.3E-32 T 13-10-2018 IPR000160 GGDEF domain Trebr_0894 635712e7d08d892d83e28e5832c57ab5 384 Gene3D G3DSA:3.30.70.270 221 381 8.3E-37 T 13-10-2018 Trebr_0894 635712e7d08d892d83e28e5832c57ab5 384 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 223 377 3.5E-32 T 13-10-2018 IPR000160 GGDEF domain Trebr_0894 635712e7d08d892d83e28e5832c57ab5 384 SMART SM00267 212 381 1.1E-22 T 13-10-2018 IPR000160 GGDEF domain Trebr_0958 def00963259f6acd0725973dab179a29 308 Pfam PF00589 Phage integrase family 116 287 5.5E-41 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Trebr_0958 def00963259f6acd0725973dab179a29 308 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 13 91 2.1E-14 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Trebr_0958 def00963259f6acd0725973dab179a29 308 SUPERFAMILY SSF56349 7 295 3.53E-58 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Trebr_0958 def00963259f6acd0725973dab179a29 308 Gene3D G3DSA:1.10.150.130 9 103 2.5E-17 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal Trebr_0958 def00963259f6acd0725973dab179a29 308 Gene3D G3DSA:1.10.443.10 115 296 2.6E-56 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Trebr_0958 def00963259f6acd0725973dab179a29 308 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 302 53.617 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 SMART SM00267 320 492 1.6E-7 T 13-10-2018 IPR000160 GGDEF domain Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 Gene3D G3DSA:3.20.20.450 505 755 8.8E-81 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 Pfam PF00990 Diguanylate cyclase, GGDEF domain 334 483 1.8E-18 T 13-10-2018 IPR000160 GGDEF domain Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 SUPERFAMILY SSF55073 338 486 1.26E-21 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 SUPERFAMILY SSF141868 507 754 1.57E-75 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 Pfam PF00563 EAL domain 508 744 2.0E-62 T 13-10-2018 IPR001633 EAL domain Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 Gene3D G3DSA:3.30.450.20 94 180 5.0E-7 T 13-10-2018 Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 SMART SM00052 502 749 8.5E-84 T 13-10-2018 IPR001633 EAL domain Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 Gene3D G3DSA:3.30.70.270 331 504 9.1E-24 T 13-10-2018 Trebr_0400 3cb947b63354826f4c3c474d8bfc2aba 761 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 331 483 5.1E-14 T 13-10-2018 IPR000160 GGDEF domain Trebr_1893 318f599306863d20070d7db5e3990623 149 Gene3D G3DSA:2.40.50.140 81 149 8.5E-18 T 13-10-2018 Trebr_1893 318f599306863d20070d7db5e3990623 149 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 147 8.2E-17 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain Trebr_1893 318f599306863d20070d7db5e3990623 149 SUPERFAMILY SSF141322 82 147 8.63E-7 T 13-10-2018 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 Gene3D G3DSA:2.40.50.100 65 180 1.1E-9 T 13-10-2018 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 Pfam PF13533 Biotin-lipoyl like 68 111 3.1E-5 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 354 369 5.0E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 77 97 5.0E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 35 58 5.0E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 310 333 5.0E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 SUPERFAMILY SSF111369 63 167 7.85E-7 T 13-10-2018 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 Pfam PF13437 HlyD family secretion protein 240 340 1.5E-11 T 13-10-2018 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 Gene3D G3DSA:2.40.30.170 278 341 3.7E-15 T 13-10-2018 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 Gene3D G3DSA:2.40.50.100 240 277 3.7E-15 T 13-10-2018 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 Gene3D G3DSA:1.10.287.470 203 239 3.7E-15 T 13-10-2018 Trebr_1062 12b8165e542f0ec786569e11fd2895f5 383 Gene3D G3DSA:1.10.287.470 100 165 1.1E-9 T 13-10-2018 Trebr_2563 d27795efb1ee2a7b57b3c6632ecb493f 213 SUPERFAMILY SSF52058 19 187 4.76E-16 T 13-10-2018 Trebr_2563 d27795efb1ee2a7b57b3c6632ecb493f 213 Gene3D G3DSA:3.80.10.10 6 197 8.6E-20 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily Trebr_0451 69a1c17ae3de22b1acc2360e72cd26de 511 Pfam PF01078 Magnesium chelatase, subunit ChlI 198 398 3.9E-73 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain Trebr_0451 69a1c17ae3de22b1acc2360e72cd26de 511 Gene3D G3DSA:3.30.230.10 25 170 6.6E-16 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_0451 69a1c17ae3de22b1acc2360e72cd26de 511 SUPERFAMILY SSF54211 6 168 3.75E-35 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_0451 69a1c17ae3de22b1acc2360e72cd26de 511 SUPERFAMILY SSF52540 198 497 5.74E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0451 69a1c17ae3de22b1acc2360e72cd26de 511 Pfam PF13541 Subunit ChlI of Mg-chelatase 18 142 1.6E-42 T 13-10-2018 Trebr_0451 69a1c17ae3de22b1acc2360e72cd26de 511 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 406 496 3.8E-22 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain Trebr_0451 69a1c17ae3de22b1acc2360e72cd26de 511 Gene3D G3DSA:3.40.50.300 200 499 1.4E-45 T 13-10-2018 Trebr_0451 69a1c17ae3de22b1acc2360e72cd26de 511 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 3 496 3.3E-150 T 13-10-2018 IPR004482 Mg chelatase-related protein Trebr_2250 168e8eea9684040eb848d17e4dff6b5c 251 SUPERFAMILY SSF75217 5 161 5.3E-29 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases Trebr_2250 168e8eea9684040eb848d17e4dff6b5c 251 PIRSF PIRSF004808 2 235 2.3E-54 T 13-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 Trebr_2250 168e8eea9684040eb848d17e4dff6b5c 251 Gene3D G3DSA:3.40.1280.10 1 164 2.7E-47 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Trebr_2250 168e8eea9684040eb848d17e4dff6b5c 251 Pfam PF00588 SpoU rRNA Methylase family 6 154 9.2E-30 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Trebr_2453 00b3a0332d514cdc8e674314a1b9c49b 270 Gene3D G3DSA:3.90.1530.10 8 112 4.4E-10 T 13-10-2018 Trebr_2453 00b3a0332d514cdc8e674314a1b9c49b 270 SUPERFAMILY SSF110849 18 153 1.44E-18 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Trebr_2453 00b3a0332d514cdc8e674314a1b9c49b 270 SMART SM00470 20 114 8.1E-10 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_2453 00b3a0332d514cdc8e674314a1b9c49b 270 Pfam PF02195 ParB-like nuclease domain 21 103 3.5E-11 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_2241 6a0eecfa994f94f019ce0c8387d60050 305 SUPERFAMILY SSF55729 9 144 6.14E-8 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_2241 6a0eecfa994f94f019ce0c8387d60050 305 SUPERFAMILY SSF55729 145 301 2.22E-41 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_2241 6a0eecfa994f94f019ce0c8387d60050 305 Gene3D G3DSA:3.40.630.30 132 295 3.7E-61 T 13-10-2018 Trebr_2241 6a0eecfa994f94f019ce0c8387d60050 305 PIRSF PIRSF018688 4 303 1.1E-59 T 13-10-2018 IPR016732 Uncharacterised conserved protein UCP018688 Trebr_2241 6a0eecfa994f94f019ce0c8387d60050 305 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 28 299 3.1E-26 T 13-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal Trebr_2241 6a0eecfa994f94f019ce0c8387d60050 305 Gene3D G3DSA:3.40.630.30 10 297 3.7E-61 T 13-10-2018 Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 Pfam PF13229 Right handed beta helix region 692 838 2.4E-8 T 13-10-2018 IPR039448 Right handed beta helix domain Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 Gene3D G3DSA:2.160.20.10 595 986 3.1E-87 T 13-10-2018 IPR012334 Pectin lyase fold Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SMART SM00710 753 781 2800.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SMART SM00710 721 743 820.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SMART SM00710 849 871 3800.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SMART SM00710 784 806 1500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SMART SM00710 813 845 2200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SMART SM00710 872 894 960.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SMART SM00060 133 209 6.9E-6 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SUPERFAMILY SSF49265 128 208 1.11E-10 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 SUPERFAMILY SSF51126 605 935 5.76E-48 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 Pfam PF00041 Fibronectin type III domain 139 207 2.1E-8 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_2157 aae7292442fe445e27113d01adc6ddec 988 Gene3D G3DSA:2.60.40.10 137 219 2.4E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0185 958b4b43395199ccda4f6f4026b923de 243 Gene3D G3DSA:2.60.120.430 34 224 3.5E-6 T 13-10-2018 Trebr_1151 3406657b73d99a101c77c424bb0bfc4c 387 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 12 157 1.4E-33 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_1151 3406657b73d99a101c77c424bb0bfc4c 387 SUPERFAMILY SSF53756 12 381 8.9E-86 T 13-10-2018 Trebr_1151 3406657b73d99a101c77c424bb0bfc4c 387 Gene3D G3DSA:3.40.50.2000 9 197 1.5E-54 T 13-10-2018 Trebr_1151 3406657b73d99a101c77c424bb0bfc4c 387 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 210 364 2.3E-31 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Trebr_1151 3406657b73d99a101c77c424bb0bfc4c 387 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 12 384 28.381 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_1151 3406657b73d99a101c77c424bb0bfc4c 387 Gene3D G3DSA:3.40.50.2000 202 367 2.5E-41 T 13-10-2018 Trebr_1151 3406657b73d99a101c77c424bb0bfc4c 387 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 11 370 5.9E-77 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_0976 1a57a3daf6644585f72c366ce22be99a 122 Gene3D G3DSA:1.10.60.10 67 120 6.9E-14 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 Trebr_0976 1a57a3daf6644585f72c366ce22be99a 122 SUPERFAMILY SSF46785 1 61 3.37E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0976 1a57a3daf6644585f72c366ce22be99a 122 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 3 53 2.4E-12 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 Trebr_0976 1a57a3daf6644585f72c366ce22be99a 122 SMART SM00529 23 120 5.2E-22 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 Trebr_0976 1a57a3daf6644585f72c366ce22be99a 122 Gene3D G3DSA:1.10.10.10 3 66 4.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0976 1a57a3daf6644585f72c366ce22be99a 122 SUPERFAMILY SSF47979 62 118 2.62E-14 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 Trebr_0976 1a57a3daf6644585f72c366ce22be99a 122 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 62 118 1.5E-14 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Trebr_0936 6212237e1f4ad2111230761983ac6a3a 100 Pfam PF05164 Cell division protein ZapA 9 84 9.0E-9 T 13-10-2018 IPR007838 Cell division protein ZapA-like Trebr_0936 6212237e1f4ad2111230761983ac6a3a 100 SUPERFAMILY SSF102829 6 74 4.71E-8 T 13-10-2018 IPR036192 Cell division protein ZapA-like superfamily Trebr_1762 afdaf90123f75278c6680c923f43faef 456 PIRSF PIRSF006603 2 451 5.0E-97 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1762 afdaf90123f75278c6680c923f43faef 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 25 415 4.9E-58 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1762 afdaf90123f75278c6680c923f43faef 456 Pfam PF01554 MatE 25 185 2.5E-28 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1762 afdaf90123f75278c6680c923f43faef 456 Pfam PF01554 MatE 250 411 4.0E-23 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1904 47652fbdd45f7605916159e98bd248d4 137 Pfam PF04519 Polymer-forming cytoskeletal 13 110 8.5E-22 T 13-10-2018 IPR007607 Bactofilin A/B Trebr_1028 21f681c6a4b745d1c9e71bf9a4514463 327 PIRSF PIRSF005651 1 326 6.4E-91 T 13-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Trebr_1028 21f681c6a4b745d1c9e71bf9a4514463 327 SUPERFAMILY SSF117892 54 144 3.01E-10 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily Trebr_1028 21f681c6a4b745d1c9e71bf9a4514463 327 TIGRFAM TIGR01932 hflC: HflC protein 1 321 1.4E-92 T 13-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Trebr_1028 21f681c6a4b745d1c9e71bf9a4514463 327 Gene3D G3DSA:3.30.479.30 51 160 1.4E-7 T 13-10-2018 Trebr_1028 21f681c6a4b745d1c9e71bf9a4514463 327 SMART SM00244 22 223 1.5E-18 T 13-10-2018 IPR001107 Band 7 domain Trebr_1028 21f681c6a4b745d1c9e71bf9a4514463 327 SUPERFAMILY SSF117892 171 227 1.1E-5 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily Trebr_1028 21f681c6a4b745d1c9e71bf9a4514463 327 Pfam PF01145 SPFH domain / Band 7 family 26 236 4.0E-20 T 13-10-2018 IPR001107 Band 7 domain Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 Pfam PF13328 HD domain 40 189 1.5E-39 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 Pfam PF04607 Region found in RelA / SpoT proteins 249 358 1.8E-35 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 SUPERFAMILY SSF109604 29 204 1.16E-48 T 13-10-2018 Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 Gene3D G3DSA:3.10.20.30 393 468 1.9E-26 T 13-10-2018 IPR012675 Beta-grasp domain superfamily Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 Gene3D G3DSA:1.10.3210.10 10 205 6.7E-55 T 13-10-2018 Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 SMART SM00954 249 358 8.0E-62 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 SUPERFAMILY SSF81301 206 374 9.81E-57 T 13-10-2018 Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 SUPERFAMILY SSF81271 390 460 1.83E-16 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 52 488 1.2E-167 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 SMART SM00471 55 167 3.9E-4 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 Gene3D G3DSA:3.30.460.10 207 338 3.7E-48 T 13-10-2018 Trebr_2113 7efbba0325edbf572f64d2dde69428f2 615 Pfam PF02824 TGS domain 400 459 9.7E-17 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Trebr_0018 16cf66084a38317fcbb2d94637c9887e 523 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 128 522 1.7E-154 T 13-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 Trebr_0018 16cf66084a38317fcbb2d94637c9887e 523 Pfam PF08666 SAF domain 14 92 1.8E-12 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Trebr_0018 16cf66084a38317fcbb2d94637c9887e 523 Gene3D G3DSA:3.90.1210.30 6 95 2.8E-30 T 13-10-2018 Trebr_0018 16cf66084a38317fcbb2d94637c9887e 523 SMART SM00858 14 92 4.4E-15 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Trebr_0504 73d95522a3f27f797c3911fc4d78d805 312 Gene3D G3DSA:3.40.50.1100 7 305 1.4E-128 T 13-10-2018 Trebr_0504 73d95522a3f27f797c3911fc4d78d805 312 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 298 1.8E-71 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Trebr_0504 73d95522a3f27f797c3911fc4d78d805 312 Gene3D G3DSA:3.40.50.1100 49 148 1.4E-128 T 13-10-2018 Trebr_0504 73d95522a3f27f797c3911fc4d78d805 312 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 37 55 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Trebr_0504 73d95522a3f27f797c3911fc4d78d805 312 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 309 3.7E-135 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Trebr_0504 73d95522a3f27f797c3911fc4d78d805 312 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 309 1.6E-131 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Trebr_0504 73d95522a3f27f797c3911fc4d78d805 312 SUPERFAMILY SSF53686 5 309 8.77E-103 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 Gene3D G3DSA:2.60.40.1180 664 719 3.3E-26 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 Gene3D G3DSA:2.60.40.10 75 179 8.3E-192 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 Pfam PF17386 Lacto-N-biose phosphorylase C-terminal domain 665 717 1.2E-24 T 13-10-2018 IPR035356 Lacto-N-biose phosphorylase, C-terminal domain Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 SUPERFAMILY SSF52317 445 657 1.18E-33 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 Pfam PF17385 Lacto-N-biose phosphorylase central domain 443 659 3.2E-95 T 13-10-2018 IPR035363 Lacto-N-biose phosphorylase, central domain Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 TIGRFAM TIGR02336 TIGR02336: 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase 6 717 1.2E-286 T 13-10-2018 IPR012711 Lacto-N-biose phosphorylase/D-galactosyl-beta-1->4-L-rhamnose phosphorylase GO:0004645 Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 Gene3D G3DSA:3.40.50.880 439 663 2.7E-84 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 Gene3D G3DSA:3.20.20.80 8 431 8.3E-192 T 13-10-2018 Trebr_2353 cb28a2430ca33e4cb0437a332eedb38a 719 Pfam PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain 8 439 7.3E-218 T 13-10-2018 IPR035080 Lacto-N-biose phosphorylase-like, N-terminal TIM barrel domain Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 Pfam PF02885 Glycosyl transferase family, helical bundle domain 198 254 2.7E-11 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 Gene3D G3DSA:1.20.970.10 198 261 3.9E-14 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 Gene3D G3DSA:3.40.1030.10 267 535 5.7E-96 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00097 Anthranilate synthase component II signature 48 57 3.3E-26 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00097 Anthranilate synthase component II signature 100 108 3.3E-26 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00097 Anthranilate synthase component II signature 2 16 3.3E-26 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00097 Anthranilate synthase component II signature 165 178 3.3E-26 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00097 Anthranilate synthase component II signature 75 86 3.3E-26 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00097 Anthranilate synthase component II signature 120 132 3.3E-26 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 SUPERFAMILY SSF47648 196 260 4.19E-12 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 SUPERFAMILY SSF52317 1 190 9.17E-49 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 Pfam PF00117 Glutamine amidotransferase class-I 4 179 9.8E-46 T 13-10-2018 IPR017926 Glutamine amidotransferase Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00096 Glutamine amidotransferase superfamily signature 48 57 5.5E-12 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 5.5E-12 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 5.5E-12 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 SUPERFAMILY SSF52418 268 531 1.7E-79 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 187 1.9E-63 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 Gene3D G3DSA:3.40.50.880 1 188 1.6E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 201 530 7.7E-106 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 197 532 34.21 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 5.7E-9 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 45 59 5.7E-9 T 13-10-2018 Trebr_1623 f4f4b152af7254cad4df99f61ddbfbe7 535 Pfam PF00591 Glycosyl transferase family, a/b domain 269 520 9.8E-82 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 476 9.1E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 SUPERFAMILY SSF58104 186 508 5.1E-50 T 13-10-2018 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 Gene3D G3DSA:1.10.287.950 260 508 2.0E-47 T 13-10-2018 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 Gene3D G3DSA:1.20.1480.50 130 224 1.3E-8 T 13-10-2018 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 388 417 8.5E-29 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 359 386 8.5E-29 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 282 311 8.5E-29 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 436 465 8.5E-29 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 SMART SM00304 164 218 2.9E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_1794 473a367a8ec4c244bcb6e3426b32058e 551 SMART SM00283 261 508 8.1E-51 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1818 de4aa6356264185effeda8bbf3d09600 204 SUPERFAMILY SSF46689 6 79 2.54E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1818 de4aa6356264185effeda8bbf3d09600 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 61 4.6E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1818 de4aa6356264185effeda8bbf3d09600 204 Gene3D G3DSA:1.10.357.10 6 203 1.5E-17 T 13-10-2018 Trebr_2026 bf05aecdd7f4e99bad770924cf3a8e9d 82 SUPERFAMILY SSF52833 2 78 1.34E-10 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_2026 bf05aecdd7f4e99bad770924cf3a8e9d 82 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 2 73 2.1E-7 T 13-10-2018 Trebr_2026 bf05aecdd7f4e99bad770924cf3a8e9d 82 Gene3D G3DSA:3.40.30.10 1 81 7.2E-13 T 13-10-2018 Trebr_2303 a35fa87cb5bc255059ba9c878bd2f3dc 173 Pfam PF00466 Ribosomal protein L10 10 105 2.3E-21 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 Trebr_2303 a35fa87cb5bc255059ba9c878bd2f3dc 173 Gene3D G3DSA:3.30.70.1730 9 138 1.8E-34 T 13-10-2018 Trebr_2303 a35fa87cb5bc255059ba9c878bd2f3dc 173 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 139 9.0E-8 T 13-10-2018 Trebr_2303 a35fa87cb5bc255059ba9c878bd2f3dc 173 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 7 165 24.44 T 13-10-2018 IPR022973 Ribosomal protein L10 Trebr_2303 a35fa87cb5bc255059ba9c878bd2f3dc 173 SUPERFAMILY SSF160369 9 164 1.27E-45 T 13-10-2018 Trebr_1854 d4e266b1ef764e8a5a0009af96a0b6fb 148 Pfam PF02623 FliW protein 20 137 4.1E-40 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 Trebr_1854 d4e266b1ef764e8a5a0009af96a0b6fb 148 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 17 140 24.304 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 Trebr_1854 d4e266b1ef764e8a5a0009af96a0b6fb 148 SUPERFAMILY SSF141457 1 142 5.75E-42 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily Trebr_1854 d4e266b1ef764e8a5a0009af96a0b6fb 148 Gene3D G3DSA:2.30.290.10 1 146 2.0E-48 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily Trebr_2020 2d71a994b29378b9f926b170c76ace94 449 Gene3D G3DSA:3.40.190.10 156 433 6.8E-58 T 13-10-2018 Trebr_2020 2d71a994b29378b9f926b170c76ace94 449 SUPERFAMILY SSF53850 51 447 1.2E-46 T 13-10-2018 Trebr_2020 2d71a994b29378b9f926b170c76ace94 449 Pfam PF13416 Bacterial extracellular solute-binding protein 61 381 4.2E-22 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2020 2d71a994b29378b9f926b170c76ace94 449 Gene3D G3DSA:3.40.190.10 59 404 6.8E-58 T 13-10-2018 Trebr_1713 da50a4ed5ebb301120f47b67014049cf 238 Pfam PF00849 RNA pseudouridylate synthase 21 170 1.2E-27 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1713 da50a4ed5ebb301120f47b67014049cf 238 SUPERFAMILY SSF55120 12 231 3.84E-47 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1713 da50a4ed5ebb301120f47b67014049cf 238 Gene3D G3DSA:3.30.2350.10 13 232 2.7E-48 T 13-10-2018 Trebr_1713 da50a4ed5ebb301120f47b67014049cf 238 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 57 71 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_2538 818481a02a45c9ad9a633ee79e9da9c3 638 Pfam PF01432 Peptidase family M3 374 618 1.1E-24 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 Trebr_2538 818481a02a45c9ad9a633ee79e9da9c3 638 Gene3D G3DSA:1.10.1370.20 242 632 2.9E-111 T 13-10-2018 Trebr_2538 818481a02a45c9ad9a633ee79e9da9c3 638 Gene3D G3DSA:1.20.140.70 35 190 9.2E-8 T 13-10-2018 Trebr_2538 818481a02a45c9ad9a633ee79e9da9c3 638 Pfam PF08439 Oligopeptidase F 141 200 1.4E-7 T 13-10-2018 IPR013647 Oligopeptidase F, N-terminal domain Trebr_2538 818481a02a45c9ad9a633ee79e9da9c3 638 SUPERFAMILY SSF55486 77 626 1.1E-77 T 13-10-2018 Trebr_1445 ffd19a41a4561916bc4b5267c22f0118 282 SUPERFAMILY SSF161098 12 282 4.02E-66 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1445 ffd19a41a4561916bc4b5267c22f0118 282 Gene3D G3DSA:1.10.3720.10 5 269 3.8E-60 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1445 ffd19a41a4561916bc4b5267c22f0118 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 275 1.1E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2309 1d1e62ba5d70af8219dc6ec1679009b1 282 Gene3D G3DSA:1.10.3130.10 26 180 3.2E-47 T 13-10-2018 Trebr_2309 1d1e62ba5d70af8219dc6ec1679009b1 282 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 186 221 1.6E-5 T 13-10-2018 IPR001451 Hexapeptide repeat Trebr_2309 1d1e62ba5d70af8219dc6ec1679009b1 282 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 235 270 1.3E-4 T 13-10-2018 IPR001451 Hexapeptide repeat Trebr_2309 1d1e62ba5d70af8219dc6ec1679009b1 282 PIRSF PIRSF000441 113 281 1.3E-53 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 Trebr_2309 1d1e62ba5d70af8219dc6ec1679009b1 282 Gene3D G3DSA:2.160.10.10 181 282 9.0E-29 T 13-10-2018 Trebr_2309 1d1e62ba5d70af8219dc6ec1679009b1 282 SUPERFAMILY SSF51161 106 278 2.08E-45 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily Trebr_1356 1d0919f0111e0955d19949059fdd60e9 626 Gene3D G3DSA:3.30.1390.30 85 161 9.8E-40 T 13-10-2018 Trebr_1356 1d0919f0111e0955d19949059fdd60e9 626 Pfam PF03717 Penicillin-binding Protein dimerisation domain 63 234 3.7E-42 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Trebr_1356 1d0919f0111e0955d19949059fdd60e9 626 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 602 1.3E-181 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Trebr_1356 1d0919f0111e0955d19949059fdd60e9 626 Gene3D G3DSA:3.40.710.10 247 611 6.5E-93 T 13-10-2018 Trebr_1356 1d0919f0111e0955d19949059fdd60e9 626 Pfam PF00905 Penicillin binding protein transpeptidase domain 269 568 4.1E-68 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Trebr_1356 1d0919f0111e0955d19949059fdd60e9 626 Gene3D G3DSA:3.90.1310.10 63 246 9.8E-40 T 13-10-2018 Trebr_1356 1d0919f0111e0955d19949059fdd60e9 626 SUPERFAMILY SSF56519 59 251 1.07E-39 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Trebr_1356 1d0919f0111e0955d19949059fdd60e9 626 SUPERFAMILY SSF56601 252 598 4.51E-82 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Trebr_0096 519b33618cc4db554aa32199695c2e73 340 Gene3D G3DSA:3.40.50.720 147 283 2.3E-88 T 13-10-2018 Trebr_0096 519b33618cc4db554aa32199695c2e73 340 SUPERFAMILY SSF50129 1 171 3.5E-50 T 13-10-2018 IPR011032 GroES-like superfamily Trebr_0096 519b33618cc4db554aa32199695c2e73 340 Pfam PF00107 Zinc-binding dehydrogenase 172 298 1.8E-21 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Trebr_0096 519b33618cc4db554aa32199695c2e73 340 SMART SM00829 10 336 4.0E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Trebr_0096 519b33618cc4db554aa32199695c2e73 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 130 1.3E-34 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Trebr_0096 519b33618cc4db554aa32199695c2e73 340 Gene3D G3DSA:3.90.180.10 13 321 2.3E-88 T 13-10-2018 Trebr_0096 519b33618cc4db554aa32199695c2e73 340 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Trebr_0096 519b33618cc4db554aa32199695c2e73 340 SUPERFAMILY SSF51735 136 303 1.53E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0308 40e8c7aab0bd819b9cf36a6dc8d4bbaf 476 Pfam PF01204 Trehalase 178 340 6.5E-12 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 Trebr_0308 40e8c7aab0bd819b9cf36a6dc8d4bbaf 476 SUPERFAMILY SSF48208 60 405 3.91E-55 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Trebr_0308 40e8c7aab0bd819b9cf36a6dc8d4bbaf 476 Gene3D G3DSA:1.50.10.10 13 390 2.9E-46 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Trebr_0752 51dee99307b7129b4cc987eb48581e81 215 Pfam PF00117 Glutamine amidotransferase class-I 4 206 5.9E-22 T 13-10-2018 IPR017926 Glutamine amidotransferase Trebr_0752 51dee99307b7129b4cc987eb48581e81 215 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 207 5.9E-63 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Trebr_0752 51dee99307b7129b4cc987eb48581e81 215 SUPERFAMILY SSF52317 2 207 8.46E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_0752 51dee99307b7129b4cc987eb48581e81 215 PIRSF PIRSF000495 1 210 4.9E-68 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Trebr_0752 51dee99307b7129b4cc987eb48581e81 215 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 208 33.344 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Trebr_0752 51dee99307b7129b4cc987eb48581e81 215 Gene3D G3DSA:3.40.50.880 1 210 8.1E-70 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2267 b54b94d45c3047add68de86312e6f4ba 382 Pfam PF13458 Periplasmic binding protein 32 361 2.8E-67 T 13-10-2018 IPR028081 Leucine-binding protein domain Trebr_2267 b54b94d45c3047add68de86312e6f4ba 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 74 92 2.1E-8 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Trebr_2267 b54b94d45c3047add68de86312e6f4ba 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 55 71 2.1E-8 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Trebr_2267 b54b94d45c3047add68de86312e6f4ba 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 33 49 2.1E-8 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Trebr_2267 b54b94d45c3047add68de86312e6f4ba 382 SUPERFAMILY SSF53822 31 375 8.75E-91 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_2267 b54b94d45c3047add68de86312e6f4ba 382 Gene3D G3DSA:3.40.50.2300 151 278 9.0E-103 T 13-10-2018 Trebr_2267 b54b94d45c3047add68de86312e6f4ba 382 Gene3D G3DSA:3.40.50.2300 34 352 9.0E-103 T 13-10-2018 Trebr_2446 f74dca748cb6e42b8d9dc199e4cd0ae7 247 SMART SM00470 29 119 4.5E-4 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_2446 f74dca748cb6e42b8d9dc199e4cd0ae7 247 Pfam PF02195 ParB-like nuclease domain 46 114 6.9E-8 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_2446 f74dca748cb6e42b8d9dc199e4cd0ae7 247 SUPERFAMILY SSF110849 49 171 1.62E-16 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Trebr_2446 f74dca748cb6e42b8d9dc199e4cd0ae7 247 Gene3D G3DSA:3.90.1530.10 19 121 1.9E-6 T 13-10-2018 Trebr_1746 0d6861865c86b77a2facad5223caf73c 334 Gene3D G3DSA:3.40.50.10950 9 331 3.1E-128 T 13-10-2018 Trebr_1746 0d6861865c86b77a2facad5223caf73c 334 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 18 328 1.9E-118 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Trebr_1746 0d6861865c86b77a2facad5223caf73c 334 Pfam PF01515 Phosphate acetyl/butaryl transferase 3 327 3.1E-116 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Trebr_1746 0d6861865c86b77a2facad5223caf73c 334 PIRSF PIRSF000428 1 334 1.0E-110 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Trebr_1746 0d6861865c86b77a2facad5223caf73c 334 Gene3D G3DSA:3.40.50.10750 143 304 3.1E-128 T 13-10-2018 Trebr_1746 0d6861865c86b77a2facad5223caf73c 334 SUPERFAMILY SSF53659 2 331 1.48E-86 T 13-10-2018 Trebr_1095 14948dced51efa9b5c69f8aef304e5bb 122 SUPERFAMILY SSF47226 5 120 2.49E-17 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_1095 14948dced51efa9b5c69f8aef304e5bb 122 Gene3D G3DSA:1.20.120.160 5 121 1.2E-15 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 Trebr_1095 14948dced51efa9b5c69f8aef304e5bb 122 Pfam PF01627 Hpt domain 29 105 2.5E-9 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Trebr_1542 6f74400ef42809068d1af85b351b62c0 225 SUPERFAMILY SSF52972 1 219 1.26E-47 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Trebr_1542 6f74400ef42809068d1af85b351b62c0 225 Hamap MF_01405 dITP/XTP pyrophosphatase. 1 219 38.001 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 Trebr_1542 6f74400ef42809068d1af85b351b62c0 225 Pfam PF01725 Ham1 family 3 215 6.4E-46 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Trebr_1542 6f74400ef42809068d1af85b351b62c0 225 Gene3D G3DSA:3.90.950.10 1 220 4.8E-57 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 Gene3D G3DSA:1.10.287.950 441 660 2.1E-41 T 13-10-2018 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 437 466 6.9E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 543 572 6.9E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 514 541 6.9E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 591 620 6.9E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 SUPERFAMILY SSF58104 424 698 1.02E-43 T 13-10-2018 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 SUPERFAMILY SSF58104 341 438 3.92E-8 T 13-10-2018 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 Pfam PF14827 Double sensory domain of two-component sensor kinase 51 284 3.9E-41 T 13-10-2018 IPR029150 Double Cache domain 3 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 485 610 9.7E-27 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 Gene3D G3DSA:1.10.287.950 318 433 1.7E-8 T 13-10-2018 Trebr_2144 bd0bd92229193c164f8ed4f1d19403fd 706 SMART SM00283 416 663 4.0E-46 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0614 19704bae71c1f4ec6733ce9e0c424ce7 249 Gene3D G3DSA:3.40.50.300 1 248 5.8E-77 T 13-10-2018 Trebr_0614 19704bae71c1f4ec6733ce9e0c424ce7 249 SUPERFAMILY SSF52540 1 242 5.6E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0614 19704bae71c1f4ec6733ce9e0c424ce7 249 Pfam PF00005 ABC transporter 18 172 1.2E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0614 19704bae71c1f4ec6733ce9e0c424ce7 249 PIRSF PIRSF039085 1 248 5.6E-116 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Trebr_0614 19704bae71c1f4ec6733ce9e0c424ce7 249 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0614 19704bae71c1f4ec6733ce9e0c424ce7 249 SMART SM00382 26 226 9.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0641 dd59554cd82cb8d4dcc2ff070e3bb569 370 SUPERFAMILY SSF52096 85 290 1.62E-40 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Trebr_0641 dd59554cd82cb8d4dcc2ff070e3bb569 370 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 91 300 1.5E-60 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 Trebr_0641 dd59554cd82cb8d4dcc2ff070e3bb569 370 Pfam PF01343 Peptidase family S49 156 297 7.2E-46 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Trebr_0641 dd59554cd82cb8d4dcc2ff070e3bb569 370 Gene3D G3DSA:3.90.226.10 92 297 5.4E-72 T 13-10-2018 Trebr_0641 dd59554cd82cb8d4dcc2ff070e3bb569 370 Gene3D G3DSA:3.40.1750.20 194 261 5.4E-72 T 13-10-2018 Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 489 632 5.2E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 Pfam PF00672 HAMP domain 323 375 1.9E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 Gene3D G3DSA:1.20.1480.50 289 387 5.0E-9 T 13-10-2018 Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 Pfam PF06580 Histidine kinase 392 470 5.0E-23 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 SMART SM00304 323 380 2.8E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 SUPERFAMILY SSF55874 448 631 4.4E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 Gene3D G3DSA:3.30.565.10 458 635 2.8E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 SUPERFAMILY SSF158472 323 377 8.76E-7 T 13-10-2018 Trebr_2532 2100bd9f8b0c86fc82f719bdf7621fe7 636 SMART SM00387 482 634 0.0031 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2197 ad680a4ddaf7239b070d733cd091504b 242 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 27 237 7.2E-63 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Trebr_2197 ad680a4ddaf7239b070d733cd091504b 242 SUPERFAMILY SSF100950 6 195 1.4E-33 T 13-10-2018 IPR037171 NagB/RpiA transferase-like Trebr_2197 ad680a4ddaf7239b070d733cd091504b 242 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 8 242 29.2 T 13-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Trebr_2197 ad680a4ddaf7239b070d733cd091504b 242 Gene3D G3DSA:3.30.70.260 143 221 6.4E-66 T 13-10-2018 Trebr_2197 ad680a4ddaf7239b070d733cd091504b 242 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 64 235 2.0E-53 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Trebr_2197 ad680a4ddaf7239b070d733cd091504b 242 SUPERFAMILY SSF75445 147 223 7.98E-18 T 13-10-2018 Trebr_2197 ad680a4ddaf7239b070d733cd091504b 242 Gene3D G3DSA:3.40.50.1360 27 234 6.4E-66 T 13-10-2018 Trebr_2176 2da1d876054e02549baa089a3d8dabcf 280 TIGRFAM TIGR01595 cas_CT1132: CRISPR-associated protein, CT1132 family 4 246 2.3E-70 T 13-10-2018 IPR006482 CRISPR-associated protein Cas7, subtype I-B/I-C Trebr_2176 2da1d876054e02549baa089a3d8dabcf 280 Pfam PF05107 CRISPR-associated protein Cas7 6 267 1.1E-78 T 13-10-2018 IPR006482 CRISPR-associated protein Cas7, subtype I-B/I-C Trebr_2176 2da1d876054e02549baa089a3d8dabcf 280 TIGRFAM TIGR02589 cas_Csd2: CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG 7 263 3.0E-96 T 13-10-2018 IPR013418 CRISPR-associated protein Csd2 Trebr_0533 6b5c028442aa191f14e3c70f053085ef 318 Gene3D G3DSA:3.90.1580.10 50 315 1.6E-37 T 13-10-2018 Trebr_0533 6b5c028442aa191f14e3c70f053085ef 318 Pfam PF03781 Sulfatase-modifying factor enzyme 1 68 258 5.3E-16 T 13-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Trebr_0533 6b5c028442aa191f14e3c70f053085ef 318 SUPERFAMILY SSF56436 75 299 7.53E-17 T 13-10-2018 IPR016187 C-type lectin fold Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 Pfam PF03853 YjeF-related protein N-terminus 24 223 1.8E-24 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 305 568 15.376 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 Pfam PF01256 Carbohydrate kinase 334 549 1.5E-32 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 Gene3D G3DSA:3.40.1190.20 301 571 3.7E-65 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 93 244 5.5E-29 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 PIRSF PIRSF017184 5 261 1.4E-32 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 PIRSF PIRSF017184 291 573 3.1E-45 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 SUPERFAMILY SSF53613 308 566 6.55E-42 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 505 515 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site Trebr_2365 70c04e5bbec020e6b24d1581c8e5cf2d 573 SUPERFAMILY SSF64153 92 251 5.49E-32 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Trebr_0723 01e8cadb7bc5c096d47bfcd897addc56 348 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 229 241 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site Trebr_0723 01e8cadb7bc5c096d47bfcd897addc56 348 Pfam PF00348 Polyprenyl synthetase 46 284 6.5E-58 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Trebr_0723 01e8cadb7bc5c096d47bfcd897addc56 348 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 100 114 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site Trebr_0723 01e8cadb7bc5c096d47bfcd897addc56 348 Gene3D G3DSA:1.10.600.10 29 347 1.8E-75 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily Trebr_0723 01e8cadb7bc5c096d47bfcd897addc56 348 SUPERFAMILY SSF48576 43 335 2.62E-66 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily Trebr_0764 554c071658dec68956a34700d7d78a2b 154 Gene3D G3DSA:3.40.1550.10 1 154 3.6E-41 T 13-10-2018 IPR028976 CheC-like superfamily Trebr_0764 554c071658dec68956a34700d7d78a2b 154 SUPERFAMILY SSF103039 1 150 9.55E-36 T 13-10-2018 IPR028976 CheC-like superfamily Trebr_0764 554c071658dec68956a34700d7d78a2b 154 Pfam PF13690 Chemotaxis phosphatase CheX 42 136 1.9E-18 T 13-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain Trebr_1427 e9b867701a273f27394cfbb4c4b7f188 641 SUPERFAMILY SSF69322 251 627 2.88E-11 T 13-10-2018 Trebr_1427 e9b867701a273f27394cfbb4c4b7f188 641 Gene3D G3DSA:2.130.10.10 20 279 2.8E-16 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Trebr_1427 e9b867701a273f27394cfbb4c4b7f188 641 SUPERFAMILY SSF50978 33 369 5.13E-23 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 Trebr_1532 602506d9168dd4b9d2474835753f2444 534 SMART SM00220 11 272 4.8E-63 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Trebr_1532 602506d9168dd4b9d2474835753f2444 534 SUPERFAMILY SSF56112 6 266 1.75E-74 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily Trebr_1532 602506d9168dd4b9d2474835753f2444 534 Gene3D G3DSA:1.10.510.10 2 286 5.3E-74 T 13-10-2018 Trebr_1532 602506d9168dd4b9d2474835753f2444 534 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 128 140 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Trebr_1532 602506d9168dd4b9d2474835753f2444 534 Pfam PF00069 Protein kinase domain 11 259 4.8E-50 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.9E-67 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 Gene3D G3DSA:3.90.930.12 1 82 1.9E-27 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 PIRSF PIRSF002162 1 177 2.1E-40 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 Pfam PF00347 Ribosomal protein L6 11 82 4.3E-13 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 Pfam PF00347 Ribosomal protein L6 91 164 4.3E-17 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 33.994 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 PRINTS PR00059 Ribosomal protein L6 signature 71 96 3.9E-28 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 PRINTS PR00059 Ribosomal protein L6 signature 141 162 3.9E-28 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 PRINTS PR00059 Ribosomal protein L6 signature 99 115 3.9E-28 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 SUPERFAMILY SSF56053 83 176 3.17E-32 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 Gene3D G3DSA:3.90.930.12 83 179 8.8E-36 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2280 7f2ccd67b768130e760ffab43a18959b 179 SUPERFAMILY SSF56053 1 82 2.88E-22 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2201 95e4ea0ba5631de17eb83ee0dd4b1070 815 PIRSF PIRSF000460 1 815 3.6E-238 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Trebr_2201 95e4ea0ba5631de17eb83ee0dd4b1070 815 Gene3D G3DSA:3.40.50.2000 470 802 0.0 T 13-10-2018 Trebr_2201 95e4ea0ba5631de17eb83ee0dd4b1070 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 5 809 0.0 T 13-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Trebr_2201 95e4ea0ba5631de17eb83ee0dd4b1070 815 Pfam PF00343 Carbohydrate phosphorylase 93 809 0.0 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Trebr_2201 95e4ea0ba5631de17eb83ee0dd4b1070 815 Gene3D G3DSA:3.40.50.2000 15 809 0.0 T 13-10-2018 Trebr_2201 95e4ea0ba5631de17eb83ee0dd4b1070 815 SUPERFAMILY SSF53756 2 813 0.0 T 13-10-2018 Trebr_1706 f5830d798136dce738135a7e4fe872a7 118 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 6 75 2.8E-20 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Trebr_1706 f5830d798136dce738135a7e4fe872a7 118 PRINTS PR01651 Protein-export SecG membrane protein signature 55 77 9.5E-10 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Trebr_1706 f5830d798136dce738135a7e4fe872a7 118 PRINTS PR01651 Protein-export SecG membrane protein signature 6 26 9.5E-10 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Trebr_1706 f5830d798136dce738135a7e4fe872a7 118 Pfam PF03840 Preprotein translocase SecG subunit 7 74 4.1E-18 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Trebr_1885 8ad70fb7dd8e0c4a13de3ffb965903d4 265 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 144 243 1.1E-21 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Trebr_1885 8ad70fb7dd8e0c4a13de3ffb965903d4 265 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 5 141 4.0E-41 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Trebr_1885 8ad70fb7dd8e0c4a13de3ffb965903d4 265 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Trebr_1885 8ad70fb7dd8e0c4a13de3ffb965903d4 265 SUPERFAMILY SSF117143 99 222 1.7E-25 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Trebr_1885 8ad70fb7dd8e0c4a13de3ffb965903d4 265 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 6 241 7.5E-58 T 13-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 Trebr_1885 8ad70fb7dd8e0c4a13de3ffb965903d4 265 Pfam PF00460 Flagella basal body rod protein 6 35 2.8E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Trebr_1885 8ad70fb7dd8e0c4a13de3ffb965903d4 265 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 186 257 6.4E-21 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Trebr_2269 f0aaa383fe9c6e960f0906cb72fb8623 172 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.7 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2269 f0aaa383fe9c6e960f0906cb72fb8623 172 SUPERFAMILY SSF64263 1 119 1.96E-43 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2269 f0aaa383fe9c6e960f0906cb72fb8623 172 Gene3D G3DSA:3.90.1030.10 1 116 1.4E-43 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2269 f0aaa383fe9c6e960f0906cb72fb8623 172 Pfam PF01196 Ribosomal protein L17 20 116 2.7E-33 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2269 f0aaa383fe9c6e960f0906cb72fb8623 172 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 1.9E-44 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0681 9b3c1d18e69478a48becd3022021f12b 1016 Gene3D G3DSA:3.40.50.300 224 306 6.3E-7 T 13-10-2018 Trebr_0681 9b3c1d18e69478a48becd3022021f12b 1016 Pfam PF12705 PD-(D/E)XK nuclease superfamily 689 1001 1.2E-24 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Trebr_0681 9b3c1d18e69478a48becd3022021f12b 1016 SUPERFAMILY SSF52540 241 517 2.92E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1966 05687badc03a41804fb26ab6498c19a4 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 3.0E-22 T 13-10-2018 Trebr_1966 05687badc03a41804fb26ab6498c19a4 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 1.4E-33 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1966 05687badc03a41804fb26ab6498c19a4 89 SUPERFAMILY SSF47060 3 89 1.03E-28 T 13-10-2018 IPR009068 S15/NS1, RNA-binding Trebr_1966 05687badc03a41804fb26ab6498c19a4 89 Gene3D G3DSA:1.10.287.10 1 89 2.2E-30 T 13-10-2018 Trebr_1966 05687badc03a41804fb26ab6498c19a4 89 Pfam PF00312 Ribosomal protein S15 11 88 1.1E-31 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1966 05687badc03a41804fb26ab6498c19a4 89 SMART SM01387 8 88 1.5E-40 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1966 05687badc03a41804fb26ab6498c19a4 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 19.648 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1511 ed16d181461a6d810ba502ef6d051e85 488 Pfam PF08323 Starch synthase catalytic domain 2 241 1.4E-74 T 13-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Trebr_1511 ed16d181461a6d810ba502ef6d051e85 488 Hamap MF_00484 Glycogen synthase [glgA]. 1 484 40.073 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Trebr_1511 ed16d181461a6d810ba502ef6d051e85 488 SUPERFAMILY SSF53756 3 486 2.08E-111 T 13-10-2018 Trebr_1511 ed16d181461a6d810ba502ef6d051e85 488 Gene3D G3DSA:3.40.50.2000 255 468 1.1E-169 T 13-10-2018 Trebr_1511 ed16d181461a6d810ba502ef6d051e85 488 Pfam PF00534 Glycosyl transferases group 1 295 440 1.2E-7 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_1511 ed16d181461a6d810ba502ef6d051e85 488 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 483 3.2E-161 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Trebr_1511 ed16d181461a6d810ba502ef6d051e85 488 Gene3D G3DSA:3.40.50.2000 3 482 1.1E-169 T 13-10-2018 Trebr_2044 2b989ba7caf4b66a8ebcdeabafbe7034 728 Gene3D G3DSA:1.10.287.950 341 463 2.3E-7 T 13-10-2018 Trebr_2044 2b989ba7caf4b66a8ebcdeabafbe7034 728 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 504 652 2.3E-23 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_2044 2b989ba7caf4b66a8ebcdeabafbe7034 728 SUPERFAMILY SSF58104 363 684 2.09E-45 T 13-10-2018 Trebr_2044 2b989ba7caf4b66a8ebcdeabafbe7034 728 Gene3D G3DSA:3.30.450.20 57 207 3.8E-35 T 13-10-2018 Trebr_2044 2b989ba7caf4b66a8ebcdeabafbe7034 728 Gene3D G3DSA:1.10.287.950 464 683 8.6E-38 T 13-10-2018 Trebr_2044 2b989ba7caf4b66a8ebcdeabafbe7034 728 Gene3D G3DSA:3.30.450.20 46 306 3.8E-35 T 13-10-2018 Trebr_2044 2b989ba7caf4b66a8ebcdeabafbe7034 728 SMART SM00283 438 685 1.2E-38 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_2044 2b989ba7caf4b66a8ebcdeabafbe7034 728 Pfam PF02743 Cache domain 32 246 1.2E-13 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 370 38.738 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 55 4.6E-12 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 64 112 2.3E-10 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 SUPERFAMILY SSF69055 282 371 4.05E-23 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 126 209 4.2E-36 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 Gene3D G3DSA:1.10.1740.10 290 374 1.4E-22 T 13-10-2018 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 PIRSF PIRSF006205 2 376 6.2E-116 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 Gene3D G3DSA:3.40.50.720 64 130 7.9E-18 T 13-10-2018 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 Gene3D G3DSA:3.40.50.720 1 63 1.5E-14 T 13-10-2018 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 SUPERFAMILY SSF55347 106 244 6.21E-53 T 13-10-2018 Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 SUPERFAMILY SSF51735 2 130 2.46E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1425 b50aa6b0375b3a8e5f1efc684b3a0f0b 378 Pfam PF13288 DXP reductoisomerase C-terminal domain 242 365 1.5E-29 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 TIGRFAM TIGR01351 adk: adenylate kinase 2 205 1.8E-75 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 Pfam PF00406 Adenylate kinase 6 185 3.0E-52 T 13-10-2018 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 Hamap MF_00235 Adenylate kinase [adk]. 1 204 46.018 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 SUPERFAMILY SSF52540 2 192 2.28E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 PRINTS PR00094 Adenylate kinase signature 172 186 2.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 PRINTS PR00094 Adenylate kinase signature 81 97 2.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 PRINTS PR00094 Adenylate kinase signature 4 17 2.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 PRINTS PR00094 Adenylate kinase signature 32 46 2.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 PRINTS PR00094 Adenylate kinase signature 155 170 2.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 Gene3D G3DSA:3.40.50.300 1 209 5.6E-77 T 13-10-2018 Trebr_0729 b28f48a7533f3d06e0d268f095964ed6 210 Pfam PF05191 Adenylate kinase, active site lid 122 157 4.4E-15 T 13-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Trebr_1669 2bcb2a6a982f0f7c308fe00270f71eaf 452 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 13 449 32.393 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Trebr_1669 2bcb2a6a982f0f7c308fe00270f71eaf 452 SUPERFAMILY SSF52402 12 314 2.44E-38 T 13-10-2018 Trebr_1669 2bcb2a6a982f0f7c308fe00270f71eaf 452 Gene3D G3DSA:2.30.30.280 285 344 1.4E-17 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Trebr_1669 2bcb2a6a982f0f7c308fe00270f71eaf 452 Gene3D G3DSA:2.40.30.10 345 452 3.9E-15 T 13-10-2018 Trebr_1669 2bcb2a6a982f0f7c308fe00270f71eaf 452 Pfam PF03054 tRNA methyl transferase 14 448 4.5E-84 T 13-10-2018 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 Gene3D G3DSA:3.40.50.620 2 159 7.5E-54 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 60 9.7E-18 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 Pfam PF01467 Cytidylyltransferase-like 5 133 1.7E-17 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 32.701 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 SUPERFAMILY SSF52374 1 156 1.08E-43 T 13-10-2018 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 121 6.0E-5 T 13-10-2018 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 1.6E-37 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 1.6E-37 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 1.6E-37 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 1.6E-37 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 1.6E-37 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Trebr_1416 19c4c86c387c23b1e3a6b7e689184232 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 157 4.2E-58 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 PIRSF PIRSF010376 34 324 1.2E-68 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 Pfam PF08544 GHMP kinases C terminal 271 310 2.6E-4 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 Gene3D G3DSA:3.30.70.890 205 326 6.5E-21 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 Gene3D G3DSA:3.30.230.10 25 201 4.5E-46 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 SUPERFAMILY SSF55060 206 323 1.29E-17 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 36 325 27.858 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 SUPERFAMILY SSF54211 36 200 3.72E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 36 308 1.9E-41 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Trebr_1772 9975932c6194bb704ab96ce91fc01184 328 Pfam PF00288 GHMP kinases N terminal domain 120 176 4.4E-8 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 Trebr_1972 79136261968e3e873b7fdd282397ff9d 169 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 9 165 12.499 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 Trebr_1972 79136261968e3e873b7fdd282397ff9d 169 SUPERFAMILY SSF75420 14 91 2.75E-8 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily Trebr_1972 79136261968e3e873b7fdd282397ff9d 169 Pfam PF02576 RimP N-terminal domain 15 91 2.7E-8 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal Trebr_1972 79136261968e3e873b7fdd282397ff9d 169 Pfam PF17384 RimP C-terminal SH3 domain 94 167 5.0E-5 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal Trebr_0107 cf936bcff5ea69a7b9c1c31ea7f0c87b 158 SUPERFAMILY SSF50341 11 152 8.11E-28 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_0107 cf936bcff5ea69a7b9c1c31ea7f0c87b 158 SMART SM00260 6 148 1.7E-26 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0107 cf936bcff5ea69a7b9c1c31ea7f0c87b 158 Gene3D G3DSA:2.30.30.40 13 142 3.2E-32 T 13-10-2018 Trebr_0107 cf936bcff5ea69a7b9c1c31ea7f0c87b 158 Pfam PF01584 CheW-like domain 11 151 9.4E-27 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0107 cf936bcff5ea69a7b9c1c31ea7f0c87b 158 Gene3D G3DSA:2.40.50.180 29 143 3.2E-32 T 13-10-2018 Trebr_0382 9ad37e08b57e3a809d5e1ec679a942a5 386 SUPERFAMILY SSF53850 208 372 4.34E-8 T 13-10-2018 Trebr_1254 107a4635e818032eab8742819d02e9ab 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 16 361 5.3E-60 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Trebr_1601 f7c119abdfed1d31743f3a015f98c2f8 181 Pfam PF03748 Flagellar basal body-associated protein FliL 99 175 2.5E-6 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Trebr_1708 ac38353d282fb9e8bbc6eaa2f67c9e43 370 Pfam PF08495 FIST N domain 29 224 1.7E-19 T 13-10-2018 IPR013702 FIST domain, N-terminal Trebr_1708 ac38353d282fb9e8bbc6eaa2f67c9e43 370 SMART SM01204 226 357 0.0071 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Trebr_1708 ac38353d282fb9e8bbc6eaa2f67c9e43 370 SMART SM00897 26 225 1.6E-13 T 13-10-2018 IPR013702 FIST domain, N-terminal Trebr_1210 941b9797e90527e7f2ec0281670c8c9b 240 SUPERFAMILY SSF53335 13 231 8.35E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1210 941b9797e90527e7f2ec0281670c8c9b 240 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 198 1.8E-46 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Trebr_1210 941b9797e90527e7f2ec0281670c8c9b 240 Gene3D G3DSA:3.40.50.150 28 236 2.2E-60 T 13-10-2018 Trebr_1210 941b9797e90527e7f2ec0281670c8c9b 240 Pfam PF02390 Putative methyltransferase 62 226 3.5E-50 T 13-10-2018 Trebr_1210 941b9797e90527e7f2ec0281670c8c9b 240 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 22 234 29.051 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Trebr_0372 ac4d5c709524b13daf763d03e6e49d73 310 SUPERFAMILY SSF51735 2 298 2.39E-88 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0372 ac4d5c709524b13daf763d03e6e49d73 310 Pfam PF04321 RmlD substrate binding domain 2 298 4.6E-93 T 13-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Trebr_0372 ac4d5c709524b13daf763d03e6e49d73 310 Gene3D G3DSA:3.40.50.720 3 288 1.0E-100 T 13-10-2018 Trebr_0372 ac4d5c709524b13daf763d03e6e49d73 310 Gene3D G3DSA:3.90.25.10 158 294 1.0E-100 T 13-10-2018 Trebr_0372 ac4d5c709524b13daf763d03e6e49d73 310 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 299 3.7E-87 T 13-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Trebr_0330 872c7f9de10895247e3f69ff57663297 160 Gene3D G3DSA:3.40.30.10 75 160 2.1E-24 T 13-10-2018 Trebr_0330 872c7f9de10895247e3f69ff57663297 160 PIRSF PIRSF000216 2 160 2.6E-48 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0330 872c7f9de10895247e3f69ff57663297 160 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 15 158 3.3E-45 T 13-10-2018 Trebr_0330 872c7f9de10895247e3f69ff57663297 160 Gene3D G3DSA:1.10.10.1590 2 74 6.9E-14 T 13-10-2018 Trebr_0330 872c7f9de10895247e3f69ff57663297 160 SUPERFAMILY SSF52833 12 159 5.81E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_0151 57cef9bc44a6f42acb0f9e0b42c9c9cb 73 Gene3D G3DSA:3.30.70.1280 1 44 6.9E-10 T 13-10-2018 Trebr_0151 57cef9bc44a6f42acb0f9e0b42c9c9cb 73 SUPERFAMILY SSF160379 29 72 9.81E-6 T 13-10-2018 Trebr_0151 57cef9bc44a6f42acb0f9e0b42c9c9cb 73 Pfam PF08002 Protein of unknown function (DUF1697) 1 31 1.0E-9 T 13-10-2018 IPR012545 Protein of unknown function DUF1697 Trebr_0151 57cef9bc44a6f42acb0f9e0b42c9c9cb 73 SUPERFAMILY SSF160379 1 30 1.23E-9 T 13-10-2018 Trebr_0996 5645f13e93004c4b9f730a57b9766217 181 PIRSF PIRSF015034 1 164 3.0E-27 T 13-10-2018 IPR025542 YacH protein Trebr_0996 5645f13e93004c4b9f730a57b9766217 181 Pfam PF02151 UvrB/uvrC motif 129 157 1.7E-8 T 13-10-2018 IPR001943 UVR domain GO:0005515 Trebr_0375 63dbcae3635f0be8f2e8a93d6a3d1334 310 SUPERFAMILY SSF110849 49 140 7.06E-26 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Trebr_0375 63dbcae3635f0be8f2e8a93d6a3d1334 310 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 46 215 1.7E-51 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Trebr_0375 63dbcae3635f0be8f2e8a93d6a3d1334 310 SMART SM00470 48 138 1.0E-27 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_0375 63dbcae3635f0be8f2e8a93d6a3d1334 310 Gene3D G3DSA:1.10.10.2830 125 238 1.9E-38 T 13-10-2018 Trebr_0375 63dbcae3635f0be8f2e8a93d6a3d1334 310 SUPERFAMILY SSF109709 130 240 3.4E-34 T 13-10-2018 Trebr_0375 63dbcae3635f0be8f2e8a93d6a3d1334 310 Gene3D G3DSA:3.90.1530.30 61 123 1.3E-23 T 13-10-2018 Trebr_0375 63dbcae3635f0be8f2e8a93d6a3d1334 310 Pfam PF02195 ParB-like nuclease domain 51 138 1.4E-22 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_0507 abb1e1619a2e7ae45a90c28e24651801 110 Gene3D G3DSA:3.30.1390.10 7 110 2.3E-30 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Trebr_0507 abb1e1619a2e7ae45a90c28e24651801 110 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 28 106 1.1E-24 T 13-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 Trebr_0507 abb1e1619a2e7ae45a90c28e24651801 110 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 24 105 19.885 T 13-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS Trebr_0507 abb1e1619a2e7ae45a90c28e24651801 110 SUPERFAMILY SSF54736 28 109 2.72E-21 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Trebr_1670 470af285774c249ffde90b8a4fcb5504 286 Gene3D G3DSA:3.40.1190.20 2 286 2.0E-60 T 13-10-2018 IPR029056 Ribokinase-like Trebr_1670 470af285774c249ffde90b8a4fcb5504 286 Pfam PF08543 Phosphomethylpyrimidine kinase 72 261 5.3E-18 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Trebr_1670 470af285774c249ffde90b8a4fcb5504 286 SUPERFAMILY SSF53613 3 280 5.46E-53 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 Gene3D G3DSA:3.90.45.10 1 186 5.7E-61 T 13-10-2018 IPR036821 Peptide deformylase superfamily Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 SUPERFAMILY SSF56420 2 158 4.19E-56 T 13-10-2018 IPR036821 Peptide deformylase superfamily Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 PIRSF PIRSF004749 1 175 1.9E-51 T 13-10-2018 IPR023635 Peptide deformylase Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 Hamap MF_00163 Peptide deformylase [def]. 2 158 29.029 T 13-10-2018 IPR023635 Peptide deformylase Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 Pfam PF01327 Polypeptide deformylase 2 145 1.7E-51 T 13-10-2018 IPR023635 Peptide deformylase Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 PRINTS PR01576 Peptide deformylase signature 116 145 1.5E-36 T 13-10-2018 IPR023635 Peptide deformylase Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 PRINTS PR01576 Peptide deformylase signature 30 59 1.5E-36 T 13-10-2018 IPR023635 Peptide deformylase Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 PRINTS PR01576 Peptide deformylase signature 85 96 1.5E-36 T 13-10-2018 IPR023635 Peptide deformylase Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 PRINTS PR01576 Peptide deformylase signature 97 115 1.5E-36 T 13-10-2018 IPR023635 Peptide deformylase Trebr_2191 057d9b800ed7b47fc5b4c599b0ed0ad0 187 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 2 150 3.2E-52 T 13-10-2018 IPR023635 Peptide deformylase Trebr_1032 f447fbf6efa3f071e385f5ff681b32b9 582 Pfam PF00664 ABC transporter transmembrane region 26 287 8.4E-14 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Trebr_1032 f447fbf6efa3f071e385f5ff681b32b9 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1032 f447fbf6efa3f071e385f5ff681b32b9 582 Gene3D G3DSA:3.40.50.300 336 582 6.8E-88 T 13-10-2018 Trebr_1032 f447fbf6efa3f071e385f5ff681b32b9 582 Gene3D G3DSA:1.20.1560.10 16 324 8.3E-30 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1032 f447fbf6efa3f071e385f5ff681b32b9 582 SUPERFAMILY SSF90123 15 325 8.76E-39 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Trebr_1032 f447fbf6efa3f071e385f5ff681b32b9 582 SMART SM00382 369 555 1.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1032 f447fbf6efa3f071e385f5ff681b32b9 582 Pfam PF00005 ABC transporter 360 509 2.8E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1032 f447fbf6efa3f071e385f5ff681b32b9 582 SUPERFAMILY SSF52540 337 579 6.35E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0439 272a3134ed90ef72f9959d1e989400f4 376 Gene3D G3DSA:3.20.20.80 2 239 3.7E-9 T 13-10-2018 Trebr_0439 272a3134ed90ef72f9959d1e989400f4 376 Pfam PF14307 Glycosyltransferase WbsX 6 368 1.7E-118 T 13-10-2018 IPR032719 Glycosyltransferase WbsX Trebr_0796 4452b9352c15f54382469f271e767fe9 197 Pfam PF02325 YGGT family 11 78 2.9E-16 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 Trebr_2143 d9db20f153d4722460431c9089508080 389 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 233 246 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Trebr_2143 d9db20f153d4722460431c9089508080 389 Pfam PF00155 Aminotransferase class I and II 32 380 3.6E-70 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_2143 d9db20f153d4722460431c9089508080 389 Gene3D G3DSA:3.90.1150.10 32 378 1.5E-129 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_2143 d9db20f153d4722460431c9089508080 389 Gene3D G3DSA:3.40.640.10 63 283 1.5E-129 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_2143 d9db20f153d4722460431c9089508080 389 SUPERFAMILY SSF53383 8 385 1.26E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1842 67435c57d017496a9d5ec87da40c3009 408 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 405 26.591 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Trebr_1842 67435c57d017496a9d5ec87da40c3009 408 Pfam PF02601 Exonuclease VII, large subunit 132 305 1.1E-67 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Trebr_1842 67435c57d017496a9d5ec87da40c3009 408 Pfam PF02601 Exonuclease VII, large subunit 337 402 7.5E-8 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Trebr_1842 67435c57d017496a9d5ec87da40c3009 408 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 404 1.1E-130 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Trebr_1842 67435c57d017496a9d5ec87da40c3009 408 Pfam PF13742 OB-fold nucleic acid binding domain 16 109 3.8E-29 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 Trebr_0516 54ea97a70693e724c952b48872af8682 261 Gene3D G3DSA:3.20.20.140 2 259 1.1E-53 T 13-10-2018 Trebr_0516 54ea97a70693e724c952b48872af8682 261 SUPERFAMILY SSF89550 1 257 6.28E-34 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Trebr_0516 54ea97a70693e724c952b48872af8682 261 Pfam PF02811 PHP domain 5 86 5.5E-7 T 13-10-2018 IPR004013 PHP domain GO:0003824 Trebr_1934 fa6a8c829db816bd9a3c15196c7a34b3 974 SUPERFAMILY SSF63411 536 745 5.21E-10 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_1934 fa6a8c829db816bd9a3c15196c7a34b3 974 Gene3D G3DSA:3.30.830.10 41 241 4.6E-20 T 13-10-2018 Trebr_1934 fa6a8c829db816bd9a3c15196c7a34b3 974 Gene3D G3DSA:3.30.830.10 539 747 4.0E-9 T 13-10-2018 Trebr_1934 fa6a8c829db816bd9a3c15196c7a34b3 974 SUPERFAMILY SSF63411 34 240 1.41E-20 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 SUPERFAMILY SSF46894 172 229 1.19E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 Pfam PF00196 Bacterial regulatory proteins, luxR family 177 229 9.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 Pfam PF00072 Response regulator receiver domain 5 150 9.0E-11 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 Gene3D G3DSA:3.40.50.12740 3 231 1.0E-36 T 13-10-2018 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 192 5.2E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 208 220 5.2E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 208 5.2E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 SMART SM00421 175 231 1.8E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 SMART SM00448 2 150 1.6E-7 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0532 41e80f4fbb64f51c05c65d254dc8f0d6 231 SUPERFAMILY SSF52172 2 160 1.84E-13 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0415 275059c05f01c7ba982b5bb9f5af7a21 726 Pfam PF00999 Sodium/hydrogen exchanger family 55 449 9.9E-50 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Trebr_0415 275059c05f01c7ba982b5bb9f5af7a21 726 SUPERFAMILY SSF55804 578 722 1.26E-33 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_0415 275059c05f01c7ba982b5bb9f5af7a21 726 Gene3D G3DSA:3.40.930.10 577 723 6.6E-40 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_0415 275059c05f01c7ba982b5bb9f5af7a21 726 Gene3D G3DSA:1.20.1530.20 45 457 8.9E-87 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily Trebr_0415 275059c05f01c7ba982b5bb9f5af7a21 726 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 581 722 6.8E-31 T 13-10-2018 IPR002178 PTS EIIA type-2 domain Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 Gene3D G3DSA:3.30.70.20 111 169 6.2E-12 T 13-10-2018 Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 Gene3D G3DSA:3.30.70.20 170 218 3.3E-14 T 13-10-2018 Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 Gene3D G3DSA:3.40.950.20 265 489 6.3E-36 T 13-10-2018 Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 Pfam PF00037 4Fe-4S binding domain 143 164 3.3E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 Pfam PF00037 4Fe-4S binding domain 190 210 1.4E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 SUPERFAMILY SSF53920 194 470 7.72E-65 T 13-10-2018 IPR009016 Iron hydrogenase Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 TIGRFAM TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3 5 468 5.0E-165 T 13-10-2018 IPR027631 [FeFe] hydrogenase, group B1/B3 Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 SUPERFAMILY SSF54862 112 167 5.52E-14 T 13-10-2018 Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 195 206 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 SUPERFAMILY SSF54862 170 210 2.23E-14 T 13-10-2018 Trebr_2315 164aa100106fc7e380fba20e3cb2ddb2 491 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 227 463 2.5E-56 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal Trebr_0324 c07683173d66e8c9eb713e294ecd54c0 293 Gene3D G3DSA:1.10.3720.10 50 291 6.4E-66 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0324 c07683173d66e8c9eb713e294ecd54c0 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 285 9.8E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0324 c07683173d66e8c9eb713e294ecd54c0 293 SUPERFAMILY SSF161098 52 281 2.49E-56 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0804 e5e987e09ce1abfa288182c2c01703a6 292 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 109 129 0.0022 T 13-10-2018 IPR006530 YD repeat Trebr_0804 e5e987e09ce1abfa288182c2c01703a6 292 Gene3D G3DSA:3.90.930.1 54 189 3.6E-8 T 13-10-2018 Trebr_1143 5c646904387b8bc039da903df2e6ea82 289 SUPERFAMILY SSF52540 26 269 5.0E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1143 5c646904387b8bc039da903df2e6ea82 289 PIRSF PIRSF003092 1 289 2.1E-80 T 13-10-2018 IPR025501 ATP binding protein MinD Trebr_1143 5c646904387b8bc039da903df2e6ea82 289 Gene3D G3DSA:3.40.50.300 26 268 8.0E-54 T 13-10-2018 Trebr_1143 5c646904387b8bc039da903df2e6ea82 289 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 29 246 1.1E-18 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Trebr_0158 6a165a2d2e1799c250032e539424bd8c 108 SUPERFAMILY SSF159894 6 96 3.4E-16 T 13-10-2018 Trebr_0158 6a165a2d2e1799c250032e539424bd8c 108 Pfam PF04993 TfoX N-terminal domain 13 94 1.1E-10 T 13-10-2018 IPR007076 TfoX, N-terminal Trebr_0158 6a165a2d2e1799c250032e539424bd8c 108 Gene3D G3DSA:3.30.1460.30 4 96 1.7E-5 T 13-10-2018 Trebr_1774 d7911191789f9c98f3e413bca3753902 114 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 4 108 20.251 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Trebr_1774 d7911191789f9c98f3e413bca3753902 114 Pfam PF02410 Ribosomal silencing factor during starvation 10 107 2.2E-25 T 13-10-2018 Trebr_1774 d7911191789f9c98f3e413bca3753902 114 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 10 107 2.9E-29 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Trebr_1774 d7911191789f9c98f3e413bca3753902 114 SUPERFAMILY SSF81301 4 112 4.25E-31 T 13-10-2018 Trebr_1774 d7911191789f9c98f3e413bca3753902 114 Gene3D G3DSA:3.30.460.10 4 114 4.9E-31 T 13-10-2018 Trebr_1045 91d1dfafb4e9f620e6ebf424cfac4641 310 SUPERFAMILY SSF46785 4 57 5.99E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1045 91d1dfafb4e9f620e6ebf424cfac4641 310 Pfam PF13280 WYL domain 138 304 1.5E-34 T 13-10-2018 IPR026881 WYL domain Trebr_1045 91d1dfafb4e9f620e6ebf424cfac4641 310 PIRSF PIRSF016838 1 310 1.7E-26 T 13-10-2018 IPR028349 Protein PafC Trebr_1045 91d1dfafb4e9f620e6ebf424cfac4641 310 Pfam PF08279 HTH domain 8 56 1.3E-13 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 Trebr_1045 91d1dfafb4e9f620e6ebf424cfac4641 310 Gene3D G3DSA:1.10.10.10 1 61 1.9E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1234 875507db83aed6c8929fd4844a486865 610 Gene3D G3DSA:3.10.20.660 1 53 4.6E-12 T 13-10-2018 Trebr_1234 875507db83aed6c8929fd4844a486865 610 Pfam PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) 2 48 7.8E-11 T 13-10-2018 IPR013378 Listeria/Bacterioides repeat Trebr_1234 875507db83aed6c8929fd4844a486865 610 TIGRFAM TIGR02543 List_Bact_rpt: repeat, TIGR02543 family 13 51 2.8E-5 T 13-10-2018 IPR013378 Listeria/Bacterioides repeat Trebr_0395 0b53719e8a9b2ba25079e976317d028a 310 SMART SM00267 120 297 1.3E-18 T 13-10-2018 IPR000160 GGDEF domain Trebr_0395 0b53719e8a9b2ba25079e976317d028a 310 Gene3D G3DSA:3.30.70.270 117 296 2.8E-36 T 13-10-2018 Trebr_0395 0b53719e8a9b2ba25079e976317d028a 310 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 128 295 8.1E-34 T 13-10-2018 IPR000160 GGDEF domain Trebr_0395 0b53719e8a9b2ba25079e976317d028a 310 Pfam PF00990 Diguanylate cyclase, GGDEF domain 132 294 9.5E-30 T 13-10-2018 IPR000160 GGDEF domain Trebr_0395 0b53719e8a9b2ba25079e976317d028a 310 SUPERFAMILY SSF55073 136 294 6.83E-30 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 Pfam PF00196 Bacterial regulatory proteins, luxR family 167 219 4.6E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 Gene3D G3DSA:3.40.50.12740 9 224 6.3E-61 T 13-10-2018 Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 SUPERFAMILY SSF52172 8 139 2.28E-35 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 SMART SM00448 9 123 4.8E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 Pfam PF00072 Response regulator receiver domain 12 123 1.2E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 197 3.0E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 209 3.0E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 181 3.0E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 SMART SM00421 164 221 1.3E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1676 362bc4462078adaa092fd01b5b7e1683 230 SUPERFAMILY SSF46894 157 223 6.12E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_1931 23eca2b93dbf9b64a95d50ad0e83fc0b 108 ProDom PD170898 LIPOPROTEIN TRL MEMBRANE OUTER TRNA-ASSOCIATED OUTERMEMBRANE LOCUS 39 108 3.0E-5 T 13-10-2018 Trebr_1931 23eca2b93dbf9b64a95d50ad0e83fc0b 108 Pfam PF13146 TRL-like protein family 36 108 1.9E-21 T 13-10-2018 IPR025113 TRL-like protein family Trebr_1859 92661ca2dffb19df706a0c975df4ebd2 105 Gene3D G3DSA:1.20.58.1000 4 105 9.4E-32 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily Trebr_1859 92661ca2dffb19df706a0c975df4ebd2 105 Pfam PF02583 Metal-sensitive transcriptional repressor 25 102 4.3E-30 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Trebr_1245 16138a7a842b89427497dcd6ec2f538b 142 Gene3D G3DSA:3.30.1490.190 85 141 9.6E-10 T 13-10-2018 Trebr_1245 16138a7a842b89427497dcd6ec2f538b 142 SUPERFAMILY SSF46785 9 134 8.77E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1245 16138a7a842b89427497dcd6ec2f538b 142 Gene3D G3DSA:1.10.10.10 2 72 8.1E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1245 16138a7a842b89427497dcd6ec2f538b 142 Pfam PF01475 Ferric uptake regulator family 9 127 3.1E-18 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 Gene3D G3DSA:1.10.10.10 4 94 9.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 SUPERFAMILY SSF46785 4 114 4.04E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 Pfam PF03466 LysR substrate binding domain 91 286 9.2E-35 T 13-10-2018 IPR005119 LysR, substrate-binding Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 SUPERFAMILY SSF53850 93 286 3.1E-32 T 13-10-2018 Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 Gene3D G3DSA:3.40.190.10 95 285 4.6E-41 T 13-10-2018 Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 Gene3D G3DSA:3.40.190.10 163 263 4.6E-41 T 13-10-2018 Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 4.5E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.0E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.0E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0463 238eb728a44d4b40543e82b8f4506f97 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.0E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 PIRSF PIRSF000534 1 444 3.1E-197 T 13-10-2018 IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108-type GO:0003872|GO:0005524|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 SUPERFAMILY SSF53784 47 439 1.57E-120 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 Gene3D G3DSA:3.40.50.450 76 269 7.1E-56 T 13-10-2018 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 Pfam PF00365 Phosphofructokinase 83 388 1.0E-61 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 Hamap MF_01981 ATP-dependent 6-phosphofructokinase [pfkA]. 5 440 53.797 T 13-10-2018 IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108-type GO:0003872|GO:0005524|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 205 222 3.5E-24 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 223 241 3.5E-24 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 172 188 3.5E-24 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 84 103 3.5E-24 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 301 313 3.5E-24 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_0487 a8c0dfc249aa10b5f82c504c06507ef3 462 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 244 260 3.5E-24 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Trebr_1471 cfc6fdbb28b5f4eed17a3d5be3c34b60 302 SUPERFAMILY SSF53335 9 296 1.99E-66 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1471 cfc6fdbb28b5f4eed17a3d5be3c34b60 302 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 292 37.483 T 13-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 Trebr_1471 cfc6fdbb28b5f4eed17a3d5be3c34b60 302 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 299 3.9E-56 T 13-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 Trebr_1471 cfc6fdbb28b5f4eed17a3d5be3c34b60 302 Gene3D G3DSA:3.40.50.150 1 302 5.4E-94 T 13-10-2018 Trebr_0298 b0ef35cd1522be7cc447db99296cb321 350 SUPERFAMILY SSF53756 7 348 1.67E-43 T 13-10-2018 Trebr_0298 b0ef35cd1522be7cc447db99296cb321 350 Gene3D G3DSA:3.40.50.2000 94 174 5.3E-8 T 13-10-2018 Trebr_0298 b0ef35cd1522be7cc447db99296cb321 350 Pfam PF13439 Glycosyltransferase Family 4 98 167 1.1E-7 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_0298 b0ef35cd1522be7cc447db99296cb321 350 Pfam PF00534 Glycosyl transferases group 1 182 304 4.8E-20 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_0298 b0ef35cd1522be7cc447db99296cb321 350 Gene3D G3DSA:3.40.50.2000 175 350 7.8E-24 T 13-10-2018 Trebr_0730 1aea8e003c3e0544816993a041744282 137 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 27 77 2.6E-6 T 13-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 Trebr_0730 1aea8e003c3e0544816993a041744282 137 Gene3D G3DSA:1.10.260.40 13 128 2.2E-9 T 13-10-2018 Trebr_0730 1aea8e003c3e0544816993a041744282 137 SUPERFAMILY SSF47413 8 78 8.59E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0730 1aea8e003c3e0544816993a041744282 137 SMART SM00530 15 71 4.7E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2423 4f7956643b653f57037a744c3582d73a 325 SUPERFAMILY SSF51735 1 304 8.42E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2423 4f7956643b653f57037a744c3582d73a 325 Gene3D G3DSA:3.40.50.720 2 311 2.9E-42 T 13-10-2018 Trebr_2423 4f7956643b653f57037a744c3582d73a 325 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 216 4.1E-17 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Trebr_2220 a594783c5de7c701a0af52b9976681aa 148 SUPERFAMILY SSF55804 1 148 1.57E-34 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_2220 a594783c5de7c701a0af52b9976681aa 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 2.7E-33 T 13-10-2018 IPR002178 PTS EIIA type-2 domain Trebr_2220 a594783c5de7c701a0af52b9976681aa 148 Gene3D G3DSA:3.40.930.10 1 148 8.4E-41 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 Gene3D G3DSA:3.20.20.210 5 527 7.6E-300 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 SUPERFAMILY SSF51726 399 760 6.41E-106 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 762 32.648 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 SUPERFAMILY SSF51726 1 369 4.71E-84 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 434 757 3.1E-141 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 3 316 2.9E-94 T 13-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 761 2.8E-295 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 Gene3D G3DSA:3.20.20.210 392 760 7.6E-300 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Trebr_1243 2000fad5ffe4ebf6cba38ca845ea3bc2 769 PIRSF PIRSF000382 1 767 3.0E-301 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Trebr_0004 cab1dcba682d7295041fd0507a6beb9e 175 Pfam PF05258 Protein of unknown function (DUF721) 9 97 2.9E-7 T 13-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 Trebr_1853 883bbd73bb6a07472b6d7be69661ce30 73 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 60 2.1E-28 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Trebr_1853 883bbd73bb6a07472b6d7be69661ce30 73 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 7.0E-14 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Trebr_1853 883bbd73bb6a07472b6d7be69661ce30 73 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 67 17.68 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Trebr_1853 883bbd73bb6a07472b6d7be69661ce30 73 Gene3D G3DSA:3.30.70.1680 1 62 7.0E-27 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 Trebr_1853 883bbd73bb6a07472b6d7be69661ce30 73 SUPERFAMILY SSF117130 1 55 2.62E-19 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 Trebr_1853 883bbd73bb6a07472b6d7be69661ce30 73 Pfam PF02599 Global regulator protein family 1 53 5.0E-24 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 Trebr_0984 11c71a2c589fcd35a7d04c347f644bd1 162 SUPERFAMILY SSF55486 12 148 4.39E-35 T 13-10-2018 Trebr_0984 11c71a2c589fcd35a7d04c347f644bd1 162 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 120 130 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site Trebr_0984 11c71a2c589fcd35a7d04c347f644bd1 162 Gene3D G3DSA:3.40.390.30 2 151 2.3E-36 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 Trebr_0984 11c71a2c589fcd35a7d04c347f644bd1 162 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 7 153 20.257 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Trebr_0984 11c71a2c589fcd35a7d04c347f644bd1 162 Pfam PF02130 Uncharacterized protein family UPF0054 22 148 2.3E-31 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Trebr_0984 11c71a2c589fcd35a7d04c347f644bd1 162 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 42 148 2.5E-32 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Trebr_1667 cbe9cfe7950b059b505f07eac45fca81 198 Gene3D G3DSA:1.10.10.1100 142 194 1.2E-13 T 13-10-2018 Trebr_1667 cbe9cfe7950b059b505f07eac45fca81 198 SUPERFAMILY SSF82649 4 131 3.4E-36 T 13-10-2018 Trebr_1667 cbe9cfe7950b059b505f07eac45fca81 198 Gene3D G3DSA:3.90.1010.10 3 140 1.1E-45 T 13-10-2018 Trebr_1667 cbe9cfe7950b059b505f07eac45fca81 198 Pfam PF01592 NifU-like N terminal domain 6 130 1.1E-37 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Trebr_1667 cbe9cfe7950b059b505f07eac45fca81 198 Pfam PF04324 BFD-like [2Fe-2S] binding domain 142 188 3.0E-12 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Trebr_1293 26f294d0092ad0ad3df4917e085bc2e2 547 Pfam PF09822 ABC-type uncharacterized transport system 32 293 9.3E-40 T 13-10-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Trebr_2014 25cae684615466e6094839a62bf55b44 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 277 7.1E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2014 25cae684615466e6094839a62bf55b44 284 Gene3D G3DSA:1.10.3720.10 3 275 1.5E-49 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2014 25cae684615466e6094839a62bf55b44 284 SUPERFAMILY SSF161098 11 284 2.9E-57 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0663 ee4e5d073060649b111a4cbcdcf653bf 358 Gene3D G3DSA:3.20.20.70 7 358 1.6E-99 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0663 ee4e5d073060649b111a4cbcdcf653bf 358 SUPERFAMILY SSF102114 25 312 2.75E-49 T 13-10-2018 Trebr_0663 ee4e5d073060649b111a4cbcdcf653bf 358 Pfam PF04055 Radical SAM superfamily 59 228 6.3E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0663 ee4e5d073060649b111a4cbcdcf653bf 358 PIRSF PIRSF004762 1 345 1.1E-63 T 13-10-2018 Trebr_0663 ee4e5d073060649b111a4cbcdcf653bf 358 TIGRFAM TIGR03956 rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE 10 356 1.2E-133 T 13-10-2018 IPR024021 [FeFe]-hydrogenase maturation HydE, radical SAM Trebr_0663 ee4e5d073060649b111a4cbcdcf653bf 358 SMART SM00729 55 267 1.8E-19 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 Pfam PF16360 GTP-binding GTPase Middle Region 114 193 4.1E-26 T 13-10-2018 IPR032305 GTP-binding protein, middle domain Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 Pfam PF01926 50S ribosome-binding GTPase 201 319 3.7E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 Gene3D G3DSA:3.40.50.11060 14 139 2.5E-32 T 13-10-2018 Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 22 359 1.3E-121 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 PIRSF PIRSF006809 2 409 4.5E-132 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 1.9E-21 T 13-10-2018 IPR025121 GTPase HflX, N-terminal Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 SUPERFAMILY SSF52540 199 369 1.71E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 201 221 2.5E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 268 286 2.5E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 Gene3D G3DSA:3.40.50.300 198 369 1.9E-41 T 13-10-2018 Trebr_0520 8f078c0ad5101bb49127242a695bd7b1 422 Hamap MF_00900 GTPase HflX [hflX]. 24 389 44.613 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 Trebr_1262 a16cf2578ec895d90a64c36ed3a09395 367 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 39 345 3.3E-57 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Trebr_1262 a16cf2578ec895d90a64c36ed3a09395 367 Gene3D G3DSA:3.40.50.2300 143 343 2.4E-87 T 13-10-2018 Trebr_1262 a16cf2578ec895d90a64c36ed3a09395 367 Gene3D G3DSA:3.40.50.2300 37 310 2.4E-87 T 13-10-2018 Trebr_1262 a16cf2578ec895d90a64c36ed3a09395 367 SUPERFAMILY SSF53822 84 301 5.5E-12 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 Pfam PF00005 ABC transporter 268 424 3.4E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 Gene3D G3DSA:3.40.50.300 2 236 3.1E-59 T 13-10-2018 Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 SMART SM00382 27 216 8.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 SMART SM00382 276 473 6.2E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 SUPERFAMILY SSF52540 244 482 4.54E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 Pfam PF00005 ABC transporter 18 168 1.8E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 SUPERFAMILY SSF52540 3 223 3.15E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0264 3378ca9cfae1ab17c0ebe9bd2a8f6b76 497 Gene3D G3DSA:3.40.50.300 254 492 2.5E-42 T 13-10-2018 Trebr_0814 8d8145e66552c8c962eb5ca9cd271835 302 Gene3D G3DSA:3.90.25.10 175 292 1.5E-56 T 13-10-2018 Trebr_0814 8d8145e66552c8c962eb5ca9cd271835 302 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 229 2.0E-34 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Trebr_0814 8d8145e66552c8c962eb5ca9cd271835 302 Gene3D G3DSA:3.40.50.720 5 285 1.5E-56 T 13-10-2018 Trebr_0814 8d8145e66552c8c962eb5ca9cd271835 302 SUPERFAMILY SSF51735 1 296 2.83E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0935 f2e6fd060d18e31d7af7e78535dd50cc 155 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 4 150 27.032 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 Trebr_0935 f2e6fd060d18e31d7af7e78535dd50cc 155 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 21 148 3.9E-35 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 Trebr_2202 865c7d26ec00e73966d0cac71fa2b2ca 491 Gene3D G3DSA:1.20.1730.10 20 489 5.1E-92 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily Trebr_2202 865c7d26ec00e73966d0cac71fa2b2ca 491 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 32 434 4.4E-85 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Trebr_2202 865c7d26ec00e73966d0cac71fa2b2ca 491 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 4 488 2.8E-171 T 13-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 Trebr_2202 865c7d26ec00e73966d0cac71fa2b2ca 491 Pfam PF00474 Sodium:solute symporter family 32 434 1.1E-89 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Trebr_0490 79712d81150737623fceaf84b309d442 146 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 2 90 1.4E-26 T 13-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal Trebr_0490 79712d81150737623fceaf84b309d442 146 SUPERFAMILY SSF57825 94 139 3.66E-15 T 13-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily Trebr_0490 79712d81150737623fceaf84b309d442 146 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 95 137 1.7E-14 T 13-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal Trebr_0490 79712d81150737623fceaf84b309d442 146 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 4 92 2.0E-15 T 13-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal Trebr_0490 79712d81150737623fceaf84b309d442 146 SUPERFAMILY SSF54893 1 93 1.7E-28 T 13-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily Trebr_0490 79712d81150737623fceaf84b309d442 146 Gene3D G3DSA:3.30.70.140 1 93 4.9E-25 T 13-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily Trebr_0490 79712d81150737623fceaf84b309d442 146 Gene3D G3DSA:2.30.30.20 94 143 1.0E-13 T 13-10-2018 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 Pfam PF04545 Sigma-70, region 4 222 275 5.4E-16 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 Gene3D G3DSA:1.10.10.10 203 287 4.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 275 3.0E-33 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 Gene3D G3DSA:1.10.10.10 125 202 1.3E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 Pfam PF04542 Sigma-70 region 2 53 120 7.9E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 247 273 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 SUPERFAMILY SSF88946 11 121 1.88E-42 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 PRINTS PR00046 Major sigma-70 factor signature 247 262 2.5E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 PRINTS PR00046 Major sigma-70 factor signature 100 108 2.5E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 PRINTS PR00046 Major sigma-70 factor signature 76 89 2.5E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 PRINTS PR00046 Major sigma-70 factor signature 226 238 2.5E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 PRINTS PR00046 Major sigma-70 factor signature 262 273 2.5E-24 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 Pfam PF00140 Sigma-70 factor, region 1.2 16 47 1.4E-12 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 Pfam PF04539 Sigma-70 region 3 133 209 2.1E-10 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 76 89 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 PIRSF PIRSF000770 1 280 6.3E-40 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 SUPERFAMILY SSF88659 186 284 3.55E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 Gene3D G3DSA:1.10.601.10 5 121 4.5E-40 T 13-10-2018 Trebr_0794 3d2f15ae2f52833049c00c7b5e44eb46 287 SUPERFAMILY SSF88659 125 200 8.72E-8 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_2567 db366cd7ebee34bbffef6bc5030c115b 210 SUPERFAMILY SSF55136 127 209 8.37E-7 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_2567 db366cd7ebee34bbffef6bc5030c115b 210 Pfam PF06445 GyrI-like small molecule binding domain 18 203 1.2E-28 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain Trebr_2567 db366cd7ebee34bbffef6bc5030c115b 210 PIRSF PIRSF031644 1 210 3.8E-72 T 13-10-2018 IPR008319 Uncharacterised conserved protein UCP031644 Trebr_2567 db366cd7ebee34bbffef6bc5030c115b 210 Gene3D G3DSA:3.20.80.10 1 208 1.2E-80 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_2090 d39df03959fdfcd491bc62e5c26053e8 72 Gene3D G3DSA:2.40.50.140 2 70 5.0E-35 T 13-10-2018 Trebr_2090 d39df03959fdfcd491bc62e5c26053e8 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 25.886 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Trebr_2090 d39df03959fdfcd491bc62e5c26053e8 72 SMART SM00316 4 72 1.1E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 Trebr_2090 d39df03959fdfcd491bc62e5c26053e8 72 SUPERFAMILY SSF50249 2 70 1.86E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_2090 d39df03959fdfcd491bc62e5c26053e8 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.8E-26 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 Trebr_2090 d39df03959fdfcd491bc62e5c26053e8 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 8.8E-35 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Trebr_1729 f6bbfd584c8af80771ff1e13bd0fc13f 372 Gene3D G3DSA:1.25.40.10 64 191 8.2E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1729 f6bbfd584c8af80771ff1e13bd0fc13f 372 Pfam PF13174 Tetratricopeptide repeat 140 170 5.0E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1729 f6bbfd584c8af80771ff1e13bd0fc13f 372 Pfam PF13174 Tetratricopeptide repeat 103 133 0.014 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1729 f6bbfd584c8af80771ff1e13bd0fc13f 372 SUPERFAMILY SSF48452 27 174 2.22E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1721 611ab6c77801bf7b7cbca5aec2bfa506 210 Gene3D G3DSA:3.40.50.300 1 210 1.0E-71 T 13-10-2018 Trebr_1721 611ab6c77801bf7b7cbca5aec2bfa506 210 Hamap MF_00238 Cytidylate kinase [cmk]. 1 210 27.111 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Trebr_1721 611ab6c77801bf7b7cbca5aec2bfa506 210 TIGRFAM TIGR00017 cmk: cytidylate kinase 1 207 1.1E-62 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Trebr_1721 611ab6c77801bf7b7cbca5aec2bfa506 210 Pfam PF02224 Cytidylate kinase 3 209 9.6E-72 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Trebr_1721 611ab6c77801bf7b7cbca5aec2bfa506 210 SUPERFAMILY SSF52540 1 208 2.2E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1087 387ecfa688d583653910581077d655fd 122 Gene3D G3DSA:1.10.10.10 16 106 4.7E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1087 387ecfa688d583653910581077d655fd 122 SMART SM00418 19 100 4.6E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_1087 387ecfa688d583653910581077d655fd 122 Pfam PF01022 Bacterial regulatory protein, arsR family 26 73 3.3E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_1087 387ecfa688d583653910581077d655fd 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 1.3E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_1087 387ecfa688d583653910581077d655fd 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 1.3E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_1087 387ecfa688d583653910581077d655fd 122 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 1.3E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_1087 387ecfa688d583653910581077d655fd 122 SUPERFAMILY SSF46785 7 87 6.71E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1194 bc36ac7f2fe5b65c9335172474b37f49 252 SUPERFAMILY SSF102114 21 190 4.84E-20 T 13-10-2018 Trebr_1194 bc36ac7f2fe5b65c9335172474b37f49 252 Pfam PF13353 4Fe-4S single cluster domain 19 133 6.2E-12 T 13-10-2018 Trebr_1194 bc36ac7f2fe5b65c9335172474b37f49 252 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 8 207 2.4E-42 T 13-10-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein Trebr_1194 bc36ac7f2fe5b65c9335172474b37f49 252 Gene3D G3DSA:3.20.20.70 3 214 1.0E-25 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1194 bc36ac7f2fe5b65c9335172474b37f49 252 Pfam PF04055 Radical SAM superfamily 27 200 8.5E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_1490 6664167733c770220329fdc8bcd9799f 613 SMART SM00448 3 116 9.3E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1490 6664167733c770220329fdc8bcd9799f 613 SMART SM00044 315 523 3.6E-34 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_1490 6664167733c770220329fdc8bcd9799f 613 Gene3D G3DSA:3.40.50.2300 1 119 2.6E-10 T 13-10-2018 Trebr_1490 6664167733c770220329fdc8bcd9799f 613 SUPERFAMILY SSF55781 168 331 5.4E-6 T 13-10-2018 Trebr_1490 6664167733c770220329fdc8bcd9799f 613 SUPERFAMILY SSF48452 528 599 8.86E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1490 6664167733c770220329fdc8bcd9799f 613 Pfam PF00072 Response regulator receiver domain 5 90 2.1E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1490 6664167733c770220329fdc8bcd9799f 613 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 355 535 1.0E-41 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_1490 6664167733c770220329fdc8bcd9799f 613 SUPERFAMILY SSF52172 3 102 1.08E-11 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1490 6664167733c770220329fdc8bcd9799f 613 Gene3D G3DSA:3.30.70.1230 348 550 1.5E-62 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1490 6664167733c770220329fdc8bcd9799f 613 SUPERFAMILY SSF55073 355 540 2.67E-57 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 Pfam PF02096 60Kd inner membrane protein 380 578 2.7E-58 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 379 578 2.1E-61 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 3 580 16.186 T 13-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 Pfam PF14849 YidC periplasmic domain 86 336 1.6E-12 T 13-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 375 6.7E-26 T 13-10-2018 IPR028053 Membrane insertase YidC, N-terminal Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 PRINTS PR00701 60kDa inner membrane protein signature 91 112 1.0E-9 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 PRINTS PR00701 60kDa inner membrane protein signature 263 278 1.0E-9 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 PRINTS PR00701 60kDa inner membrane protein signature 441 464 1.0E-9 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Trebr_0008 44e15125990c1d5acc78612d7123c6b1 603 PRINTS PR00701 60kDa inner membrane protein signature 175 195 1.0E-9 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Trebr_1707 7a73bcdc4b4c17cd2c9af6118642f60a 249 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 6 239 1.0E-60 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1707 7a73bcdc4b4c17cd2c9af6118642f60a 249 Gene3D G3DSA:3.20.20.70 1 249 6.6E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1707 7a73bcdc4b4c17cd2c9af6118642f60a 249 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 60.696 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1707 7a73bcdc4b4c17cd2c9af6118642f60a 249 SUPERFAMILY SSF51351 1 247 3.27E-90 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1707 7a73bcdc4b4c17cd2c9af6118642f60a 249 Pfam PF00121 Triosephosphate isomerase 5 245 1.4E-92 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1707 7a73bcdc4b4c17cd2c9af6118642f60a 249 ProSitePatterns PS00171 Triosephosphate isomerase active site. 164 174 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_1483 fae71248bf286c3994207bfd8925ec1f 146 Pfam PF01475 Ferric uptake regulator family 18 132 7.9E-24 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Trebr_1483 fae71248bf286c3994207bfd8925ec1f 146 Gene3D G3DSA:3.30.1490.190 90 146 2.9E-10 T 13-10-2018 Trebr_1483 fae71248bf286c3994207bfd8925ec1f 146 Gene3D G3DSA:1.10.10.10 5 87 5.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1483 fae71248bf286c3994207bfd8925ec1f 146 SUPERFAMILY SSF46785 9 141 2.69E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 10 329 6.2E-133 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 Gene3D G3DSA:3.40.50.970 325 529 3.5E-67 T 13-10-2018 Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 SMART SM00861 350 521 2.2E-55 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 ProSitePatterns PS00802 Transketolase signature 2. 463 479 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 SUPERFAMILY SSF52922 531 653 1.31E-27 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 SUPERFAMILY SSF52518 341 522 8.33E-61 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 Pfam PF02779 Transketolase, pyrimidine binding domain 349 519 5.7E-39 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 SUPERFAMILY SSF52518 4 322 1.18E-99 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 Gene3D G3DSA:3.40.50.920 535 654 7.7E-30 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 653 1.8E-226 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Trebr_2258 8ca5ce90ae8c0ff6f6123ee39162d07f 655 Gene3D G3DSA:3.40.50.970 3 324 8.4E-107 T 13-10-2018 Trebr_1634 4682900113d2a2244c634e147fa8f948 275 Gene3D G3DSA:3.90.550.10 12 238 1.6E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1634 4682900113d2a2244c634e147fa8f948 275 SUPERFAMILY SSF53448 14 251 4.03E-29 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1634 4682900113d2a2244c634e147fa8f948 275 Pfam PF00535 Glycosyl transferase family 2 12 187 1.1E-6 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 Pfam PF00294 pfkB family carbohydrate kinase 2 290 1.8E-39 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 SUPERFAMILY SSF53613 1 299 2.65E-60 T 13-10-2018 IPR029056 Ribokinase-like Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 PRINTS PR00990 Ribokinase signature 32 51 1.1E-20 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 PRINTS PR00990 Ribokinase signature 214 225 1.1E-20 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 PRINTS PR00990 Ribokinase signature 172 187 1.1E-20 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 PRINTS PR00990 Ribokinase signature 105 118 1.1E-20 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 PRINTS PR00990 Ribokinase signature 5 26 1.1E-20 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 Gene3D G3DSA:3.40.1190.20 1 301 4.9E-70 T 13-10-2018 IPR029056 Ribokinase-like Trebr_0267 4991cfcb2d409f65d6ceab72d894ff04 308 Hamap MF_01987 Ribokinase [rbsK]. 1 298 18.633 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 Trebr_1750 32537a5310462fc122ecbf78615c623a 311 Gene3D G3DSA:2.70.70.10 167 310 3.4E-48 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_1750 32537a5310462fc122ecbf78615c623a 311 Pfam PF01551 Peptidase family M23 210 304 3.6E-32 T 13-10-2018 IPR016047 Peptidase M23 Trebr_1750 32537a5310462fc122ecbf78615c623a 311 SUPERFAMILY SSF51261 82 308 1.15E-52 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_2414 c73e581cf86b52f5a09e3387801cbaef 195 SUPERFAMILY SSF111304 2 194 1.16E-69 T 13-10-2018 IPR023627 Recombination protein RecR Trebr_2414 c73e581cf86b52f5a09e3387801cbaef 195 SMART SM00493 77 162 2.2E-12 T 13-10-2018 IPR006171 TOPRIM domain Trebr_2414 c73e581cf86b52f5a09e3387801cbaef 195 TIGRFAM TIGR00615 recR: recombination protein RecR 2 192 1.1E-75 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Trebr_2414 c73e581cf86b52f5a09e3387801cbaef 195 Gene3D G3DSA:1.10.8.420 1 49 4.0E-13 T 13-10-2018 Trebr_2414 c73e581cf86b52f5a09e3387801cbaef 195 Hamap MF_00017 Recombination protein RecR [recR]. 1 195 94.229 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Trebr_2414 c73e581cf86b52f5a09e3387801cbaef 195 Pfam PF02132 RecR protein 38 74 2.0E-14 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger Trebr_2414 c73e581cf86b52f5a09e3387801cbaef 195 Pfam PF13662 Toprim domain 79 168 1.3E-22 T 13-10-2018 IPR006171 TOPRIM domain Trebr_2414 c73e581cf86b52f5a09e3387801cbaef 195 Gene3D G3DSA:3.40.1360.10 74 194 7.2E-45 T 13-10-2018 Trebr_2511 d01f39677a8ed13e84f416f965589139 310 Pfam PF02673 Bacitracin resistance protein BacA 6 304 1.3E-67 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Trebr_2511 d01f39677a8ed13e84f416f965589139 310 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 309 15.848 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Trebr_0587 5a262dc18d4a46959779d146cb91c17d 310 SUPERFAMILY SSF74650 13 309 1.83E-43 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Trebr_0587 5a262dc18d4a46959779d146cb91c17d 310 Pfam PF01263 Aldose 1-epimerase 14 307 5.7E-22 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 Trebr_0587 5a262dc18d4a46959779d146cb91c17d 310 Gene3D G3DSA:2.70.98.10 12 310 5.8E-81 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Trebr_2244 6298d196d2fa46448bf6c8064c9e615e 431 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 7 426 2.8E-152 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_2244 6298d196d2fa46448bf6c8064c9e615e 431 Gene3D G3DSA:3.65.10.10 9 424 7.3E-151 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Trebr_2244 6298d196d2fa46448bf6c8064c9e615e 431 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 4 427 36.794 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Trebr_2244 6298d196d2fa46448bf6c8064c9e615e 431 Gene3D G3DSA:3.65.10.10 24 231 7.3E-151 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Trebr_2244 6298d196d2fa46448bf6c8064c9e615e 431 SUPERFAMILY SSF55205 7 425 1.06E-110 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Trebr_2244 6298d196d2fa46448bf6c8064c9e615e 431 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 11 417 9.0E-67 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Trebr_1902 f94bcdae5815a0c3a9b894ed939c041f 365 Pfam PF13379 NMT1-like family 74 303 1.2E-12 T 13-10-2018 Trebr_1902 f94bcdae5815a0c3a9b894ed939c041f 365 PIRSF PIRSF027386 2 365 3.7E-78 T 13-10-2018 IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type Trebr_1902 f94bcdae5815a0c3a9b894ed939c041f 365 SUPERFAMILY SSF53850 62 312 3.47E-27 T 13-10-2018 Trebr_1902 f94bcdae5815a0c3a9b894ed939c041f 365 Gene3D G3DSA:3.40.190.10 65 362 1.6E-79 T 13-10-2018 Trebr_1902 f94bcdae5815a0c3a9b894ed939c041f 365 Gene3D G3DSA:3.40.190.10 141 261 1.6E-79 T 13-10-2018 Trebr_0148 fe7aefe492f6b85bc422c8ad551c9f26 376 Pfam PF01548 Transposase 7 158 1.9E-15 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Trebr_0148 fe7aefe492f6b85bc422c8ad551c9f26 376 Pfam PF02371 Transposase IS116/IS110/IS902 family 232 306 1.4E-20 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Trebr_0082 fe7aefe492f6b85bc422c8ad551c9f26 376 Pfam PF01548 Transposase 7 158 1.9E-15 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Trebr_0082 fe7aefe492f6b85bc422c8ad551c9f26 376 Pfam PF02371 Transposase IS116/IS110/IS902 family 232 306 1.4E-20 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 SUPERFAMILY SSF53335 294 468 1.46E-21 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 SMART SM00260 28 167 5.2E-41 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 Pfam PF01739 CheR methyltransferase, SAM binding domain 293 467 4.6E-38 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 Gene3D G3DSA:3.40.50.150 294 475 6.4E-24 T 13-10-2018 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 SUPERFAMILY SSF50341 32 168 2.88E-31 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 Gene3D G3DSA:2.40.50.180 49 166 8.4E-35 T 13-10-2018 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 PRINTS PR00996 Glutamate methyltransferase family signature 319 339 6.6E-8 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 PRINTS PR00996 Glutamate methyltransferase family signature 414 428 6.6E-8 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 PRINTS PR00996 Glutamate methyltransferase family signature 433 456 6.6E-8 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 Pfam PF01584 CheW-like domain 33 167 4.1E-32 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 SMART SM00138 233 474 3.8E-12 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_0763 49e121f33a4f6f18edbf32aec65ed9d9 476 Gene3D G3DSA:2.30.30.40 34 161 8.4E-35 T 13-10-2018 Trebr_0671 a6366a3302d47408b440bdf1fe0973bf 138 SUPERFAMILY SSF55021 69 131 2.14E-11 T 13-10-2018 Trebr_0671 a6366a3302d47408b440bdf1fe0973bf 138 SUPERFAMILY SSF55021 1 69 1.45E-14 T 13-10-2018 Trebr_0671 a6366a3302d47408b440bdf1fe0973bf 138 Gene3D G3DSA:3.30.2130.10 1 136 3.5E-47 T 13-10-2018 Trebr_0671 a6366a3302d47408b440bdf1fe0973bf 138 Pfam PF01842 ACT domain 5 61 1.9E-6 T 13-10-2018 IPR002912 ACT domain Trebr_0979 75c447348e2e32e24d4e627b229feace 269 Gene3D G3DSA:3.40.190.10 126 219 3.5E-71 T 13-10-2018 Trebr_0979 75c447348e2e32e24d4e627b229feace 269 SUPERFAMILY SSF53850 1 264 6.34E-67 T 13-10-2018 Trebr_0979 75c447348e2e32e24d4e627b229feace 269 SMART SM00062 40 263 1.4E-62 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Trebr_0979 75c447348e2e32e24d4e627b229feace 269 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 261 2.0E-64 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Trebr_0979 75c447348e2e32e24d4e627b229feace 269 Gene3D G3DSA:3.40.190.10 42 261 3.5E-71 T 13-10-2018 Trebr_0422 83677d7c07e1769370c4b1f74d60fd96 435 Gene3D G3DSA:3.40.190.10 153 417 6.4E-63 T 13-10-2018 Trebr_0422 83677d7c07e1769370c4b1f74d60fd96 435 SUPERFAMILY SSF53850 39 432 5.25E-46 T 13-10-2018 Trebr_0422 83677d7c07e1769370c4b1f74d60fd96 435 Pfam PF13416 Bacterial extracellular solute-binding protein 59 365 9.8E-20 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0422 83677d7c07e1769370c4b1f74d60fd96 435 Gene3D G3DSA:3.40.190.10 57 381 6.4E-63 T 13-10-2018 Trebr_1375 71c8fe8149805deb6a6ebe85a15851b6 357 SUPERFAMILY SSF55729 157 335 1.11E-40 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_1375 71c8fe8149805deb6a6ebe85a15851b6 357 SUPERFAMILY SSF55729 18 166 5.83E-7 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_1375 71c8fe8149805deb6a6ebe85a15851b6 357 Pfam PF02388 FemAB family 18 230 5.1E-26 T 13-10-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 Trebr_1375 71c8fe8149805deb6a6ebe85a15851b6 357 Pfam PF02388 FemAB family 235 341 7.3E-33 T 13-10-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 Trebr_1375 71c8fe8149805deb6a6ebe85a15851b6 357 Gene3D G3DSA:3.40.630.30 127 323 7.4E-70 T 13-10-2018 Trebr_2111 d5d91b5467f25e344b1d6f67eeaea6ca 325 Pfam PF07859 alpha/beta hydrolase fold 83 291 3.5E-45 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 Trebr_2111 d5d91b5467f25e344b1d6f67eeaea6ca 325 Gene3D G3DSA:3.40.50.1820 16 319 9.9E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2111 d5d91b5467f25e344b1d6f67eeaea6ca 325 SUPERFAMILY SSF53474 52 312 2.12E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2384 be523f0b1d067532e258808926ad2ac9 294 Gene3D G3DSA:3.30.2010.10 77 162 1.4E-9 T 13-10-2018 Trebr_2384 be523f0b1d067532e258808926ad2ac9 294 Pfam PF01435 Peptidase family M48 82 268 7.1E-31 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Trebr_1912 e9e6b7a93426123385b43b9ededcb8e4 614 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 204 609 5.2E-76 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Trebr_1912 e9e6b7a93426123385b43b9ededcb8e4 614 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 36 142 8.0E-8 T 13-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Trebr_1912 e9e6b7a93426123385b43b9ededcb8e4 614 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 212 613 3.1E-106 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Trebr_2124 30a7d7a894e3b7b79322d0ba8709c9e5 273 Gene3D G3DSA:3.40.50.300 1 184 9.5E-42 T 13-10-2018 Trebr_2124 30a7d7a894e3b7b79322d0ba8709c9e5 273 Pfam PF13189 Cytidylate kinase-like family 3 167 7.8E-39 T 13-10-2018 Trebr_1776 f5cc147bd06240ba2a4bfdc14bb7547d 188 Pfam PF01966 HD domain 21 134 1.5E-13 T 13-10-2018 IPR006674 HD domain Trebr_1776 f5cc147bd06240ba2a4bfdc14bb7547d 188 SMART SM00471 17 145 1.2E-8 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_1776 f5cc147bd06240ba2a4bfdc14bb7547d 188 TIGRFAM TIGR00488 TIGR00488: putative HD superfamily hydrolase 19 177 1.9E-34 T 13-10-2018 IPR005249 Conserved hypothetical protein CHP00488 Trebr_1776 f5cc147bd06240ba2a4bfdc14bb7547d 188 SUPERFAMILY SSF109604 6 149 4.71E-25 T 13-10-2018 Trebr_1776 f5cc147bd06240ba2a4bfdc14bb7547d 188 Gene3D G3DSA:1.10.3210.10 4 187 3.4E-45 T 13-10-2018 Trebr_0222 39fb8134a75be0d94cc66f51154ef0f9 169 Gene3D G3DSA:2.30.110.10 16 169 1.6E-26 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Trebr_0222 39fb8134a75be0d94cc66f51154ef0f9 169 Pfam PF01613 Flavin reductase like domain 26 166 4.9E-9 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Trebr_0222 39fb8134a75be0d94cc66f51154ef0f9 169 SUPERFAMILY SSF50475 21 166 2.94E-22 T 13-10-2018 Trebr_0124 534abd079faa7b7a4015e6d240f029c7 434 SUPERFAMILY SSF55874 296 418 1.31E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0124 534abd079faa7b7a4015e6d240f029c7 434 SMART SM00387 330 420 8.7E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0124 534abd079faa7b7a4015e6d240f029c7 434 Gene3D G3DSA:3.30.565.10 299 418 2.3E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0124 534abd079faa7b7a4015e6d240f029c7 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 333 415 2.0E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0124 534abd079faa7b7a4015e6d240f029c7 434 Pfam PF07730 Histidine kinase 225 289 1.5E-9 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Trebr_0320 ed95fd0d9ce2f4cb24d5a4a7bc86a03d 249 SUPERFAMILY SSF89550 2 222 7.36E-32 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Trebr_0320 ed95fd0d9ce2f4cb24d5a4a7bc86a03d 249 Pfam PF02811 PHP domain 6 83 2.5E-8 T 13-10-2018 IPR004013 PHP domain GO:0003824 Trebr_0320 ed95fd0d9ce2f4cb24d5a4a7bc86a03d 249 SMART SM00481 5 73 7.0E-10 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Trebr_0278 06db2b8ee100978f46bf8a9fa24bca8a 383 Gene3D G3DSA:3.40.50.970 4 177 1.7E-15 T 13-10-2018 Trebr_0278 06db2b8ee100978f46bf8a9fa24bca8a 383 TIGRFAM TIGR03297 Ppyr-DeCO2ase: phosphonopyruvate decarboxylase 15 381 1.0E-149 T 13-10-2018 IPR017684 Phosphonopyruvate decarboxylase GO:0032923|GO:0033980 KEGG: 00440+4.1.1.82|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7510|MetaCyc: PWY-7769 Trebr_0278 06db2b8ee100978f46bf8a9fa24bca8a 383 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 214 344 2.1E-14 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Trebr_0278 06db2b8ee100978f46bf8a9fa24bca8a 383 SUPERFAMILY SSF52518 4 172 4.07E-20 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_0278 06db2b8ee100978f46bf8a9fa24bca8a 383 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 169 2.1E-18 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Trebr_0278 06db2b8ee100978f46bf8a9fa24bca8a 383 Gene3D G3DSA:3.40.50.970 178 383 1.5E-25 T 13-10-2018 Trebr_0278 06db2b8ee100978f46bf8a9fa24bca8a 383 SUPERFAMILY SSF52518 184 378 7.04E-25 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 SUPERFAMILY SSF48452 38 141 5.69E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 SUPERFAMILY SSF48452 697 871 1.69E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 SUPERFAMILY SSF48452 510 644 7.32E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 Gene3D G3DSA:1.25.40.10 937 1044 1.3E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 Gene3D G3DSA:1.25.40.10 768 887 6.5E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 Gene3D G3DSA:1.25.40.10 672 767 6.7E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 Pfam PF13174 Tetratricopeptide repeat 1004 1035 0.15 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 Pfam PF13174 Tetratricopeptide repeat 809 835 0.076 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1953 d432a1d1e2ac24b1dfcd894613625084 1046 Gene3D G3DSA:1.25.40.10 23 159 2.2E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.6E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.6E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 SUPERFAMILY SSF47413 1 59 2.76E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 Gene3D G3DSA:1.10.260.40 3 59 2.6E-20 T 13-10-2018 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 Gene3D G3DSA:3.40.50.2300 62 323 6.1E-71 T 13-10-2018 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.7E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 Gene3D G3DSA:3.40.50.2300 160 328 6.1E-71 T 13-10-2018 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 SMART SM00354 1 71 9.0E-30 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 Pfam PF13377 Periplasmic binding protein-like domain 168 331 5.5E-39 T 13-10-2018 Trebr_0066 d6758dbc927f59677ba871bc775845d2 338 SUPERFAMILY SSF53822 61 333 8.64E-67 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0670 3a79315da254cf523b39129b111cba45 434 SUPERFAMILY SSF56801 23 403 9.55E-57 T 13-10-2018 Trebr_0670 3a79315da254cf523b39129b111cba45 434 Gene3D G3DSA:3.40.50.12780 2 325 1.1E-126 T 13-10-2018 Trebr_0670 3a79315da254cf523b39129b111cba45 434 Gene3D G3DSA:3.30.300.30 326 434 4.0E-32 T 13-10-2018 Trebr_0670 3a79315da254cf523b39129b111cba45 434 PIRSF PIRSF006444 1 434 2.9E-195 T 13-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 Trebr_0670 3a79315da254cf523b39129b111cba45 434 Pfam PF14535 AMP-binding enzyme C-terminal domain 334 432 1.2E-30 T 13-10-2018 IPR028154 AMP-dependent ligase, C-terminal Trebr_0670 3a79315da254cf523b39129b111cba45 434 Pfam PF00501 AMP-binding enzyme 90 285 2.6E-13 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Trebr_1536 e703f91919e0ea29901650c103bfc6d3 246 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 37.362 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Trebr_1536 e703f91919e0ea29901650c103bfc6d3 246 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 4.9E-103 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Trebr_1536 e703f91919e0ea29901650c103bfc6d3 246 Gene3D G3DSA:3.30.70.980 86 236 5.7E-56 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Trebr_1536 e703f91919e0ea29901650c103bfc6d3 246 Pfam PF01709 Transcriptional regulator 5 237 6.0E-98 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Trebr_1536 e703f91919e0ea29901650c103bfc6d3 246 Gene3D G3DSA:3.30.70.980 130 205 5.7E-56 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Trebr_1536 e703f91919e0ea29901650c103bfc6d3 246 SUPERFAMILY SSF75625 3 242 1.83E-96 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Trebr_1536 e703f91919e0ea29901650c103bfc6d3 246 Gene3D G3DSA:1.10.10.200 1 79 4.6E-36 T 13-10-2018 IPR017856 Integrase-like, N-terminal Trebr_1841 c27a9b93031692b20988d1a4f380284e 605 Gene3D G3DSA:3.20.20.80 7 476 2.4E-182 T 13-10-2018 Trebr_1841 c27a9b93031692b20988d1a4f380284e 605 SMART SM00642 15 421 8.2E-136 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_1841 c27a9b93031692b20988d1a4f380284e 605 Pfam PF00128 Alpha amylase, catalytic domain 30 379 1.9E-105 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_1841 c27a9b93031692b20988d1a4f380284e 605 Gene3D G3DSA:3.90.400.10 107 181 2.4E-182 T 13-10-2018 Trebr_1841 c27a9b93031692b20988d1a4f380284e 605 SUPERFAMILY SSF51445 6 482 1.93E-140 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_1718 efd99744297c7b6bbb07e40e2656f90e 225 SUPERFAMILY SSF48452 85 209 1.14E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1718 efd99744297c7b6bbb07e40e2656f90e 225 Pfam PF13174 Tetratricopeptide repeat 138 163 0.017 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1718 efd99744297c7b6bbb07e40e2656f90e 225 SMART SM00028 136 169 0.095 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1718 efd99744297c7b6bbb07e40e2656f90e 225 SMART SM00028 172 205 60.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1718 efd99744297c7b6bbb07e40e2656f90e 225 SMART SM00028 99 132 76.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1718 efd99744297c7b6bbb07e40e2656f90e 225 Gene3D G3DSA:1.25.40.10 50 223 4.9E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0717 cfee9be8c6c477a26c0d9907a2687683 335 Gene3D G3DSA:3.40.190.170 34 334 4.3E-86 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Trebr_0717 cfee9be8c6c477a26c0d9907a2687683 335 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 43 290 3.7E-54 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Trebr_0717 cfee9be8c6c477a26c0d9907a2687683 335 PIRSF PIRSF006470 4 334 1.1E-77 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Trebr_0717 cfee9be8c6c477a26c0d9907a2687683 335 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 42 318 9.6E-69 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Trebr_0128 bbeae6915a3b15c30d1780cd4695b61d 234 SMART SM01007 8 186 1.1E-57 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal Trebr_0128 bbeae6915a3b15c30d1780cd4695b61d 234 Gene3D G3DSA:3.40.225.10 1 216 1.3E-61 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Trebr_0128 bbeae6915a3b15c30d1780cd4695b61d 234 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 185 8.7E-45 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal Trebr_0128 bbeae6915a3b15c30d1780cd4695b61d 234 SUPERFAMILY SSF53639 2 215 1.96E-57 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Trebr_2166 7dff8a80afb381379a21ed2fba72370c 427 PIRSF PIRSF006066 1 427 3.0E-140 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Trebr_2166 7dff8a80afb381379a21ed2fba72370c 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 5.9E-142 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Trebr_2166 7dff8a80afb381379a21ed2fba72370c 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 417 8.2E-118 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Trebr_1764 ce61e5a4bfac1392f161030cb5115341 579 Pfam PF01973 Protein of unknown function DUF115 185 370 1.2E-10 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like Trebr_2164 3785113a10c2eff4bc72a98917a615a0 328 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 289 8.8E-77 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Trebr_2164 3785113a10c2eff4bc72a98917a615a0 328 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 313 1.3E-87 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Trebr_2164 3785113a10c2eff4bc72a98917a615a0 328 Gene3D G3DSA:3.40.190.170 30 327 4.4E-107 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Trebr_2164 3785113a10c2eff4bc72a98917a615a0 328 SUPERFAMILY SSF53850 30 212 4.81E-7 T 13-10-2018 Trebr_2164 3785113a10c2eff4bc72a98917a615a0 328 PIRSF PIRSF006470 1 328 2.7E-80 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Trebr_0432 12cae504ae0cefbb4ae2e2c751158b72 376 Pfam PF13439 Glycosyltransferase Family 4 15 180 5.6E-21 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_0432 12cae504ae0cefbb4ae2e2c751158b72 376 Gene3D G3DSA:3.40.50.2000 193 355 9.3E-32 T 13-10-2018 Trebr_0432 12cae504ae0cefbb4ae2e2c751158b72 376 SUPERFAMILY SSF53756 3 362 4.24E-51 T 13-10-2018 Trebr_0432 12cae504ae0cefbb4ae2e2c751158b72 376 Gene3D G3DSA:3.40.50.2000 1 190 9.1E-23 T 13-10-2018 Trebr_0432 12cae504ae0cefbb4ae2e2c751158b72 376 Pfam PF00534 Glycosyl transferases group 1 186 341 1.5E-21 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_1565 dc3c24830fda4c7f7edca5fe4ce39e9b 260 Gene3D G3DSA:3.20.20.150 2 258 2.3E-32 T 13-10-2018 Trebr_1565 dc3c24830fda4c7f7edca5fe4ce39e9b 260 SUPERFAMILY SSF51658 3 207 2.35E-23 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily Trebr_1565 dc3c24830fda4c7f7edca5fe4ce39e9b 260 Pfam PF01261 Xylose isomerase-like TIM barrel 19 202 7.9E-18 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Trebr_0798 cad52bad6204e122b2e20cf969157864 352 Pfam PF00005 ABC transporter 26 173 2.6E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0798 cad52bad6204e122b2e20cf969157864 352 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0798 cad52bad6204e122b2e20cf969157864 352 SMART SM00382 34 222 1.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0798 cad52bad6204e122b2e20cf969157864 352 Gene3D G3DSA:3.30.70.260 272 352 6.9E-12 T 13-10-2018 Trebr_0798 cad52bad6204e122b2e20cf969157864 352 SUPERFAMILY SSF55021 270 351 7.78E-17 T 13-10-2018 Trebr_0798 cad52bad6204e122b2e20cf969157864 352 SUPERFAMILY SSF52540 3 244 1.86E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0798 cad52bad6204e122b2e20cf969157864 352 SMART SM00930 277 352 1.0E-16 T 13-10-2018 IPR018449 NIL domain Trebr_0798 cad52bad6204e122b2e20cf969157864 352 Pfam PF09383 NIL domain 281 351 1.8E-17 T 13-10-2018 IPR018449 NIL domain Trebr_0798 cad52bad6204e122b2e20cf969157864 352 Gene3D G3DSA:3.40.50.300 3 271 1.1E-80 T 13-10-2018 Trebr_2553 04f2a9253425a4637042643b203571d9 168 Pfam PF12724 Flavodoxin domain 4 131 2.7E-12 T 13-10-2018 IPR026816 Flavodoxin domain Trebr_2553 04f2a9253425a4637042643b203571d9 168 SUPERFAMILY SSF52218 3 130 5.87E-11 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_2553 04f2a9253425a4637042643b203571d9 168 Gene3D G3DSA:3.40.50.360 1 155 1.1E-8 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_2553 04f2a9253425a4637042643b203571d9 168 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Trebr_2193 e935c9dd9ac85450ec70658120382ba3 340 SMART SM00740 53 120 6.9E-11 T 13-10-2018 IPR005543 PASTA domain Trebr_2193 e935c9dd9ac85450ec70658120382ba3 340 SMART SM00740 121 194 4.0E-5 T 13-10-2018 IPR005543 PASTA domain Trebr_2193 e935c9dd9ac85450ec70658120382ba3 340 Pfam PF03793 PASTA domain 57 119 7.7E-9 T 13-10-2018 IPR005543 PASTA domain Trebr_2193 e935c9dd9ac85450ec70658120382ba3 340 Pfam PF03793 PASTA domain 127 193 1.9E-5 T 13-10-2018 IPR005543 PASTA domain Trebr_2193 e935c9dd9ac85450ec70658120382ba3 340 Gene3D G3DSA:3.30.10.20 54 121 3.7E-11 T 13-10-2018 Trebr_2193 e935c9dd9ac85450ec70658120382ba3 340 Gene3D G3DSA:3.30.10.20 125 196 9.4E-8 T 13-10-2018 Trebr_0983 3e0119b52780c99e5d064dfc477e2a0a 568 SUPERFAMILY SSF109604 342 486 2.77E-15 T 13-10-2018 Trebr_0983 3e0119b52780c99e5d064dfc477e2a0a 568 Pfam PF07698 7TM receptor with intracellular HD hydrolase 136 317 3.7E-14 T 13-10-2018 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain Trebr_0983 3e0119b52780c99e5d064dfc477e2a0a 568 Pfam PF01966 HD domain 344 484 1.4E-18 T 13-10-2018 IPR006674 HD domain Trebr_0983 3e0119b52780c99e5d064dfc477e2a0a 568 Gene3D G3DSA:1.10.3210.10 333 525 2.2E-20 T 13-10-2018 Trebr_0983 3e0119b52780c99e5d064dfc477e2a0a 568 TIGRFAM TIGR00277 HDIG: HDIG domain 341 439 4.4E-28 T 13-10-2018 IPR006675 HDIG domain Trebr_0983 3e0119b52780c99e5d064dfc477e2a0a 568 SMART SM00471 340 494 7.9E-9 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 Pfam PF00005 ABC transporter 21 171 9.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 SUPERFAMILY SSF52540 268 484 1.61E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 SMART SM00382 279 474 0.0014 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 SMART SM00382 30 219 7.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 SUPERFAMILY SSF52540 4 228 1.02E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 Pfam PF00005 ABC transporter 271 425 9.0E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 Gene3D G3DSA:3.40.50.300 1 247 4.1E-58 T 13-10-2018 Trebr_2066 f8de820962c2b8f8fa201f499fe610bc 502 Gene3D G3DSA:3.40.50.300 262 500 3.2E-42 T 13-10-2018 Trebr_1835 9b61189babd00a53bedbf09fa5e15100 164 SMART SM00909 73 161 0.0074 T 13-10-2018 IPR019606 GerMN domain Trebr_1835 9b61189babd00a53bedbf09fa5e15100 164 Pfam PF10646 Sporulation and spore germination 56 157 1.9E-7 T 13-10-2018 IPR019606 GerMN domain Trebr_2098 b6eb824e297b876af234be2928ce0af4 350 SUPERFAMILY SSF52540 13 322 2.8E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2098 b6eb824e297b876af234be2928ce0af4 350 Gene3D G3DSA:3.40.50.300 9 209 3.5E-47 T 13-10-2018 Trebr_2098 b6eb824e297b876af234be2928ce0af4 350 Gene3D G3DSA:1.10.8.300 210 346 2.6E-33 T 13-10-2018 Trebr_2098 b6eb824e297b876af234be2928ce0af4 350 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 49 179 5.9E-63 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Trebr_2098 b6eb824e297b876af234be2928ce0af4 350 PIRSF PIRSF002849 2 350 4.3E-129 T 13-10-2018 Trebr_2261 d2e5ff492c7e79596dd608862d575c21 145 SUPERFAMILY SSF49764 12 142 1.57E-39 T 13-10-2018 IPR008978 HSP20-like chaperone Trebr_2261 d2e5ff492c7e79596dd608862d575c21 145 Gene3D G3DSA:2.60.40.790 2 144 3.5E-40 T 13-10-2018 IPR008978 HSP20-like chaperone Trebr_2261 d2e5ff492c7e79596dd608862d575c21 145 Pfam PF00011 Hsp20/alpha crystallin family 42 142 4.9E-28 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Trebr_2114 915aebc486e035c8ed0f321c3c30bbe4 346 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 246 252 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_2114 915aebc486e035c8ed0f321c3c30bbe4 346 Gene3D G3DSA:1.10.8.10 38 110 2.2E-16 T 13-10-2018 Trebr_2114 915aebc486e035c8ed0f321c3c30bbe4 346 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 51 341 1.8E-67 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Trebr_2114 915aebc486e035c8ed0f321c3c30bbe4 346 Pfam PF05175 Methyltransferase small domain 162 254 5.2E-7 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Trebr_2114 915aebc486e035c8ed0f321c3c30bbe4 346 Gene3D G3DSA:3.40.50.150 111 346 2.1E-50 T 13-10-2018 Trebr_2114 915aebc486e035c8ed0f321c3c30bbe4 346 SUPERFAMILY SSF53335 46 343 1.6E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_2114 915aebc486e035c8ed0f321c3c30bbe4 346 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 53 344 7.7E-52 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Trebr_0534 8fad11ba459d0568bb9be4a065911862 334 SUPERFAMILY SSF56436 65 328 4.71E-32 T 13-10-2018 IPR016187 C-type lectin fold Trebr_0534 8fad11ba459d0568bb9be4a065911862 334 Gene3D G3DSA:3.90.1580.10 57 330 4.4E-40 T 13-10-2018 Trebr_0534 8fad11ba459d0568bb9be4a065911862 334 Pfam PF03781 Sulfatase-modifying factor enzyme 1 65 286 1.0E-21 T 13-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Trebr_1851 95053739d512818cbab842f67f01e39d 112 SUPERFAMILY SSF52091 1 109 1.39E-26 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_1851 95053739d512818cbab842f67f01e39d 112 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 105 1.4E-28 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 Trebr_1851 95053739d512818cbab842f67f01e39d 112 Gene3D G3DSA:3.30.750.24 1 112 3.1E-26 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_1851 95053739d512818cbab842f67f01e39d 112 Pfam PF01740 STAS domain 4 106 7.0E-19 T 13-10-2018 IPR002645 STAS domain Trebr_1422 620fa386d181777662ef8b6cc55145e4 183 SUPERFAMILY SSF55194 8 182 1.24E-69 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 Trebr_1422 620fa386d181777662ef8b6cc55145e4 183 Hamap MF_00040 Ribosome-recycling factor [frr]. 1 183 26.78 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Trebr_1422 620fa386d181777662ef8b6cc55145e4 183 Pfam PF01765 Ribosome recycling factor 18 181 5.8E-66 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Trebr_1422 620fa386d181777662ef8b6cc55145e4 183 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 182 2.2E-72 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Trebr_1422 620fa386d181777662ef8b6cc55145e4 183 Gene3D G3DSA:1.10.132.20 10 180 1.7E-70 T 13-10-2018 Trebr_1422 620fa386d181777662ef8b6cc55145e4 183 Gene3D G3DSA:3.30.1360.40 29 103 1.7E-70 T 13-10-2018 Trebr_0888 f532321aabe5a18949a78d531b8899f1 155 Pfam PF01980 Uncharacterised protein family UPF0066 16 123 2.4E-27 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain Trebr_0888 f532321aabe5a18949a78d531b8899f1 155 SUPERFAMILY SSF118196 2 150 6.8E-39 T 13-10-2018 IPR036413 YaeB-like superfamily Trebr_0888 f532321aabe5a18949a78d531b8899f1 155 Gene3D G3DSA:2.40.30.70 2 130 1.3E-31 T 13-10-2018 IPR036414 YaeB, N-terminal domain superfamily Trebr_1436 0a9c5b9b46701af271901eec34f73869 108 Pfam PF01740 STAS domain 6 105 2.0E-11 T 13-10-2018 IPR002645 STAS domain Trebr_1436 0a9c5b9b46701af271901eec34f73869 108 SUPERFAMILY SSF52091 5 107 4.91E-19 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_1436 0a9c5b9b46701af271901eec34f73869 108 Gene3D G3DSA:3.30.750.24 2 108 4.2E-18 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_2065 041d7c815a89b988a421f6583b704ed0 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 312 2.5E-45 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0007 c64a27f9592f0f336c9bdbecfe7f356e 73 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 5 73 24.927 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Trebr_0007 c64a27f9592f0f336c9bdbecfe7f356e 73 Pfam PF01809 Haemolytic domain 7 72 1.5E-29 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Trebr_0007 c64a27f9592f0f336c9bdbecfe7f356e 73 SMART SM01234 5 72 1.5E-43 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Trebr_0007 c64a27f9592f0f336c9bdbecfe7f356e 73 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 20 72 1.0E-17 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Trebr_0007 c64a27f9592f0f336c9bdbecfe7f356e 73 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 10 73 1.4E-29 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Trebr_0037 0651c382e32ef68b52efd5cf21481cac 453 Gene3D G3DSA:3.40.640.10 67 335 2.2E-126 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0037 0651c382e32ef68b52efd5cf21481cac 453 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 11 448 6.5E-172 T 13-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 Trebr_0037 0651c382e32ef68b52efd5cf21481cac 453 Pfam PF00202 Aminotransferase class-III 30 444 2.4E-86 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Trebr_0037 0651c382e32ef68b52efd5cf21481cac 453 Gene3D G3DSA:3.90.1150.10 19 441 2.2E-126 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0037 0651c382e32ef68b52efd5cf21481cac 453 SUPERFAMILY SSF53383 21 444 2.72E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0037 0651c382e32ef68b52efd5cf21481cac 453 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 291 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Trebr_1184 0fd4c07f95ec974233f2e86e1cb13786 181 Pfam PF10962 Protein of unknown function (DUF2764) 114 177 1.0E-5 T 13-10-2018 IPR024492 Protein of unknown function DUF2764 Trebr_1994 5ba86cd670643e025814342d18e971f8 132 Pfam PF12844 Helix-turn-helix domain 7 62 4.8E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1994 5ba86cd670643e025814342d18e971f8 132 SUPERFAMILY SSF47413 5 63 6.22E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1994 5ba86cd670643e025814342d18e971f8 132 Gene3D G3DSA:1.10.260.40 3 93 2.0E-9 T 13-10-2018 Trebr_1994 5ba86cd670643e025814342d18e971f8 132 SMART SM00530 9 64 1.1E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 6.5E-20 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 6.5E-20 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 6.5E-20 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 65 4.8E-26 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 Gene3D G3DSA:2.40.50.530 1 65 1.5E-23 T 13-10-2018 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 SUPERFAMILY SSF143034 2 62 7.59E-21 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 Pfam PF01632 Ribosomal protein L35 2 61 1.8E-23 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0939 6dae412fde83235d929b15b8453cfb28 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.653 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 119 129 6.2E-8 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 130 141 6.2E-8 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 158 170 6.2E-8 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 TIGRFAM TIGR00498 lexA: repressor LexA 1 202 1.8E-56 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 Gene3D G3DSA:1.10.10.10 1 68 1.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 Pfam PF00717 Peptidase S24-like 122 189 9.0E-13 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 SUPERFAMILY SSF51306 81 201 4.53E-30 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 Gene3D G3DSA:2.10.109.10 87 202 5.2E-38 T 13-10-2018 Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 Pfam PF01726 LexA DNA binding domain 1 63 1.1E-15 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 Hamap MF_00015 LexA repressor [lexA]. 3 203 28.943 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Trebr_2130 5f370681a3987a8cfbf56285982a8891 204 SUPERFAMILY SSF46785 3 68 3.92E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0043 8000836c1c8689a0bed539bc0faa843b 419 Gene3D G3DSA:3.40.190.10 19 415 4.1E-85 T 13-10-2018 Trebr_0043 8000836c1c8689a0bed539bc0faa843b 419 SUPERFAMILY SSF53850 34 411 4.04E-70 T 13-10-2018 Trebr_0043 8000836c1c8689a0bed539bc0faa843b 419 Pfam PF01547 Bacterial extracellular solute-binding protein 43 332 4.4E-35 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0567 a9b575fa225033b544f30c6642773be1 432 SUPERFAMILY SSF52833 283 427 4.59E-38 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_0567 a9b575fa225033b544f30c6642773be1 432 Gene3D G3DSA:3.40.30.10 250 431 7.3E-45 T 13-10-2018 Trebr_0567 a9b575fa225033b544f30c6642773be1 432 ProSitePatterns PS00194 Thioredoxin family active site. 308 326 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Trebr_0567 a9b575fa225033b544f30c6642773be1 432 Pfam PF00578 AhpC/TSA family 283 406 5.1E-26 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Trebr_0567 a9b575fa225033b544f30c6642773be1 432 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 15 230 7.3E-54 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 Trebr_0521 57af62d7845dcb456b808ca9289d9a86 157 Pfam PF03748 Flagellar basal body-associated protein FliL 95 154 1.4E-6 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Trebr_0414 c38fdc489294dfc6e3dd69c9ac62fd10 517 PIRSF PIRSF006603 73 513 9.2E-86 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0414 c38fdc489294dfc6e3dd69c9ac62fd10 517 TIGRFAM TIGR00797 matE: MATE efflux family protein 91 481 1.8E-65 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0414 c38fdc489294dfc6e3dd69c9ac62fd10 517 Pfam PF01554 MatE 91 251 4.4E-31 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0414 c38fdc489294dfc6e3dd69c9ac62fd10 517 Pfam PF01554 MatE 322 471 1.7E-19 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0427 b996e239db2f529b8d4ce9b4151f7295 284 Gene3D G3DSA:1.10.3720.10 7 275 2.0E-50 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0427 b996e239db2f529b8d4ce9b4151f7295 284 SUPERFAMILY SSF161098 13 284 3.66E-57 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0427 b996e239db2f529b8d4ce9b4151f7295 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 268 1.8E-11 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2023 a4771c41a14b2d2dcac1ac3a8888a8f2 388 Gene3D G3DSA:2.30.40.10 14 383 7.6E-118 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Trebr_2023 a4771c41a14b2d2dcac1ac3a8888a8f2 388 SUPERFAMILY SSF51338 3 376 1.48E-11 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Trebr_2023 a4771c41a14b2d2dcac1ac3a8888a8f2 388 SUPERFAMILY SSF51556 60 353 6.35E-83 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_2023 a4771c41a14b2d2dcac1ac3a8888a8f2 388 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 3 381 8.4E-122 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Trebr_2023 a4771c41a14b2d2dcac1ac3a8888a8f2 388 PIRSF PIRSF038994 2 386 3.6E-115 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Trebr_2023 a4771c41a14b2d2dcac1ac3a8888a8f2 388 Gene3D G3DSA:3.20.20.140 60 355 7.6E-118 T 13-10-2018 Trebr_2023 a4771c41a14b2d2dcac1ac3a8888a8f2 388 Pfam PF01979 Amidohydrolase family 56 381 9.7E-32 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 SUPERFAMILY SSF102114 140 384 1.7E-45 T 13-10-2018 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 2 506 50.47 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 Gene3D G3DSA:3.40.50.12160 2 125 2.6E-29 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 Pfam PF00919 Uncharacterized protein family UPF0004 3 99 5.2E-24 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 SMART SM00729 141 377 5.6E-40 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 8 438 3.8E-110 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 Gene3D G3DSA:2.40.50.140 395 444 4.8E-6 T 13-10-2018 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 Pfam PF04055 Radical SAM superfamily 146 338 5.7E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 439 4.0E-101 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 Gene3D G3DSA:3.80.30.20 141 394 1.2E-72 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Trebr_0526 90fe6e8b7eae028ab5729cf3a4fdf10a 508 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 145 165 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Trebr_2526 9e148f9b361f92a3a0f20fdb42d6c4b9 435 Pfam PF01547 Bacterial extracellular solute-binding protein 48 350 2.5E-34 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2526 9e148f9b361f92a3a0f20fdb42d6c4b9 435 SUPERFAMILY SSF53850 27 432 2.13E-60 T 13-10-2018 Trebr_2526 9e148f9b361f92a3a0f20fdb42d6c4b9 435 Gene3D G3DSA:3.40.190.10 31 435 7.6E-72 T 13-10-2018 Trebr_1808 f52022518a3fb189d779ff350b7bfd9c 350 Gene3D G3DSA:3.40.50.2000 176 346 1.5E-30 T 13-10-2018 Trebr_1808 f52022518a3fb189d779ff350b7bfd9c 350 SUPERFAMILY SSF53756 13 346 3.53E-57 T 13-10-2018 Trebr_1808 f52022518a3fb189d779ff350b7bfd9c 350 Gene3D G3DSA:3.40.50.2000 7 175 8.8E-12 T 13-10-2018 Trebr_1808 f52022518a3fb189d779ff350b7bfd9c 350 Pfam PF13439 Glycosyltransferase Family 4 92 168 4.0E-8 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_1808 f52022518a3fb189d779ff350b7bfd9c 350 Pfam PF00534 Glycosyl transferases group 1 171 319 1.5E-19 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_2313 ffd6ffc3a93957e8c3cea4dcd87d35e0 412 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 47 248 7.6E-12 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_2313 ffd6ffc3a93957e8c3cea4dcd87d35e0 412 Gene3D G3DSA:3.60.40.10 14 258 1.8E-26 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_2313 ffd6ffc3a93957e8c3cea4dcd87d35e0 412 SUPERFAMILY SSF81606 20 249 4.05E-9 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_2211 6fc39672d643f71ed5150818faeb44b0 147 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 15 142 1.0E-28 T 13-10-2018 IPR010181 CGCAxxGCC motif Trebr_2211 6fc39672d643f71ed5150818faeb44b0 147 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 15 142 1.0E-23 T 13-10-2018 IPR010181 CGCAxxGCC motif Trebr_2570 5bfa4ef77a3da9e50f4846cbc344b018 239 Pfam PF00005 ABC transporter 37 187 2.3E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2570 5bfa4ef77a3da9e50f4846cbc344b018 239 SMART SM00382 46 233 7.5E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2570 5bfa4ef77a3da9e50f4846cbc344b018 239 SUPERFAMILY SSF52540 32 237 1.68E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2570 5bfa4ef77a3da9e50f4846cbc344b018 239 Gene3D G3DSA:3.40.50.300 23 239 1.2E-63 T 13-10-2018 Trebr_2570 5bfa4ef77a3da9e50f4846cbc344b018 239 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0201 f4aa3eef1629b6656669586c9c2d7a37 114 Gene3D G3DSA:1.10.260.40 9 112 9.9E-17 T 13-10-2018 Trebr_0201 f4aa3eef1629b6656669586c9c2d7a37 114 Pfam PF01381 Helix-turn-helix 13 66 5.3E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0201 f4aa3eef1629b6656669586c9c2d7a37 114 SMART SM00530 12 67 3.3E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0201 f4aa3eef1629b6656669586c9c2d7a37 114 SUPERFAMILY SSF47413 5 74 5.63E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0121 21fbcda71462fda7ce838dc099a0ed9d 295 Gene3D G3DSA:1.10.3720.10 50 292 7.1E-66 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0121 21fbcda71462fda7ce838dc099a0ed9d 295 SUPERFAMILY SSF161098 54 284 1.31E-60 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0121 21fbcda71462fda7ce838dc099a0ed9d 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 283 2.8E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0509 19c9934b67e86afee1511296c2a9f6c7 238 Gene3D G3DSA:3.40.630.70 62 232 1.8E-56 T 13-10-2018 Trebr_0509 19c9934b67e86afee1511296c2a9f6c7 238 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 37 216 5.3E-55 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Trebr_0509 19c9934b67e86afee1511296c2a9f6c7 238 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 34 205 2.7E-62 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Trebr_0509 19c9934b67e86afee1511296c2a9f6c7 238 Gene3D G3DSA:2.30.210.20 9 61 1.1E-15 T 13-10-2018 Trebr_0509 19c9934b67e86afee1511296c2a9f6c7 238 SUPERFAMILY SSF55729 13 225 4.66E-74 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0509 19c9934b67e86afee1511296c2a9f6c7 238 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 238 75.127 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Trebr_1034 3253c2b28950c6ef6e4d1061570d389d 103 Gene3D G3DSA:1.10.1660.10 5 95 6.4E-24 T 13-10-2018 Trebr_1034 3253c2b28950c6ef6e4d1061570d389d 103 SMART SM00422 7 76 1.2E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_1034 3253c2b28950c6ef6e4d1061570d389d 103 ProSitePatterns PS00552 MerR-type HTH domain signature. 10 32 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_1034 3253c2b28950c6ef6e4d1061570d389d 103 SUPERFAMILY SSF46955 6 77 1.05E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily Trebr_1034 3253c2b28950c6ef6e4d1061570d389d 103 Pfam PF13411 MerR HTH family regulatory protein 8 67 1.0E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_1664 92e08b55bf39f453aba0777104b47932 135 Gene3D G3DSA:3.40.140.10 1 133 3.9E-45 T 13-10-2018 Trebr_1664 92e08b55bf39f453aba0777104b47932 135 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 56 97 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Trebr_1664 92e08b55bf39f453aba0777104b47932 135 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 104 2.9E-15 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Trebr_1664 92e08b55bf39f453aba0777104b47932 135 SUPERFAMILY SSF53927 6 127 5.02E-40 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Trebr_1664 92e08b55bf39f453aba0777104b47932 135 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 10 126 2.1E-38 T 13-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 SUPERFAMILY SSF50156 100 199 1.84E-14 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 Pfam PF02163 Peptidase family M50 7 428 9.2E-64 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 Gene3D G3DSA:2.30.42.10 141 216 1.2E-17 T 13-10-2018 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 Gene3D G3DSA:2.30.42.10 217 295 1.5E-13 T 13-10-2018 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 SUPERFAMILY SSF50156 212 282 4.34E-14 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 Pfam PF13180 PDZ domain 221 277 2.9E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 Pfam PF13180 PDZ domain 139 198 1.6E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 438 8.6E-91 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 SMART SM00228 107 192 2.7E-5 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1426 0abfaa77e5ee04ebb52acabf799ec839 444 SMART SM00228 207 274 2.4E-5 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1058 fa78f2468e333b800fdbb1cd9ac5ee47 290 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 286 36.376 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Trebr_1058 fa78f2468e333b800fdbb1cd9ac5ee47 290 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 4 283 1.5E-76 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Trebr_1058 fa78f2468e333b800fdbb1cd9ac5ee47 290 SMART SM00518 3 286 2.7E-80 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Trebr_1058 fa78f2468e333b800fdbb1cd9ac5ee47 290 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 221 237 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 Trebr_1058 fa78f2468e333b800fdbb1cd9ac5ee47 290 Gene3D G3DSA:3.20.20.150 1 289 1.0E-81 T 13-10-2018 Trebr_1058 fa78f2468e333b800fdbb1cd9ac5ee47 290 Pfam PF01261 Xylose isomerase-like TIM barrel 21 245 1.1E-26 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Trebr_1058 fa78f2468e333b800fdbb1cd9ac5ee47 290 SUPERFAMILY SSF51658 2 283 1.96E-76 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily Trebr_1058 fa78f2468e333b800fdbb1cd9ac5ee47 290 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 183 190 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 Trebr_0272 e280f12e684a94f98008a17b39eece92 176 Gene3D G3DSA:3.40.630.30 5 174 1.0E-33 T 13-10-2018 Trebr_0272 e280f12e684a94f98008a17b39eece92 176 Pfam PF00583 Acetyltransferase (GNAT) family 88 152 1.2E-11 T 13-10-2018 IPR000182 GNAT domain Trebr_0272 e280f12e684a94f98008a17b39eece92 176 SUPERFAMILY SSF55729 14 171 1.86E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_2491 860aba5179820cfee6303ea948d9da9a 333 SUPERFAMILY SSF69917 46 296 1.86E-26 T 13-10-2018 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 Trebr_2491 860aba5179820cfee6303ea948d9da9a 333 Pfam PF01278 Omptin family 52 270 1.7E-27 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 Trebr_2491 860aba5179820cfee6303ea948d9da9a 333 Gene3D G3DSA:2.40.128.90 43 314 1.7E-48 T 13-10-2018 Trebr_1395 29638d29caecf86301f2bbdac2ef0e00 315 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 284 5.5E-55 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Trebr_1395 29638d29caecf86301f2bbdac2ef0e00 315 Gene3D G3DSA:3.40.50.720 16 312 4.2E-118 T 13-10-2018 Trebr_1395 29638d29caecf86301f2bbdac2ef0e00 315 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 27 313 6.0E-26 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Trebr_1395 29638d29caecf86301f2bbdac2ef0e00 315 Gene3D G3DSA:3.40.50.720 97 283 4.2E-118 T 13-10-2018 Trebr_1395 29638d29caecf86301f2bbdac2ef0e00 315 SUPERFAMILY SSF52283 3 136 8.32E-28 T 13-10-2018 Trebr_1395 29638d29caecf86301f2bbdac2ef0e00 315 SUPERFAMILY SSF51735 101 285 6.37E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2115 2987696b91314a302a48357daa13e965 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 353 5.2E-160 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Trebr_2115 2987696b91314a302a48357daa13e965 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Trebr_2115 2987696b91314a302a48357daa13e965 359 SUPERFAMILY SSF75620 8 346 7.85E-134 T 13-10-2018 Trebr_2115 2987696b91314a302a48357daa13e965 359 Gene3D G3DSA:1.20.58.410 2 93 5.0E-10 T 13-10-2018 Trebr_2115 2987696b91314a302a48357daa13e965 359 SMART SM00937 62 177 1.4E-59 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 Trebr_2115 2987696b91314a302a48357daa13e965 359 Gene3D G3DSA:3.30.160.20 209 295 4.7E-97 T 13-10-2018 Trebr_2115 2987696b91314a302a48357daa13e965 359 Pfam PF03462 PCRF domain 9 202 2.4E-74 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 Trebr_2115 2987696b91314a302a48357daa13e965 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 355 39.885 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Trebr_2115 2987696b91314a302a48357daa13e965 359 Pfam PF00472 RF-1 domain 210 319 1.2E-38 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Trebr_2115 2987696b91314a302a48357daa13e965 359 Gene3D G3DSA:3.30.70.1660 110 340 4.7E-97 T 13-10-2018 Trebr_0378 b9e4912d7992253fc89677e20c5612e3 459 SUPERFAMILY SSF53335 220 339 3.5E-11 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0378 b9e4912d7992253fc89677e20c5612e3 459 Pfam PF13679 Methyltransferase domain 193 340 6.1E-33 T 13-10-2018 IPR025714 Methyltransferase domain Trebr_0378 b9e4912d7992253fc89677e20c5612e3 459 Gene3D G3DSA:3.40.50.150 184 334 6.3E-8 T 13-10-2018 Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 SUPERFAMILY SSF102114 185 411 2.09E-47 T 13-10-2018 Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 Pfam PF04055 Radical SAM superfamily 194 364 7.1E-21 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 27 470 1.0E-86 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 193 213 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 Pfam PF00919 Uncharacterized protein family UPF0004 27 124 2.0E-16 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 29 436 1.1E-120 T 13-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 Gene3D G3DSA:3.80.30.20 187 420 3.0E-67 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 SMART SM00729 189 407 2.4E-43 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Trebr_1743 ebb89f8b2b54c97977b140ab5c83874c 515 Gene3D G3DSA:3.40.50.12160 26 130 1.1E-13 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 SUPERFAMILY SSF52540 4 227 5.22E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 SMART SM00382 30 217 1.4E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 SMART SM00382 280 477 0.0066 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 Pfam PF00005 ABC transporter 271 425 2.7E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 Gene3D G3DSA:3.40.50.300 258 494 3.1E-42 T 13-10-2018 Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 Gene3D G3DSA:3.40.50.300 1 245 2.1E-53 T 13-10-2018 Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 SUPERFAMILY SSF52540 248 482 8.7E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1084 22e9b7e9b3583b37a48873a95bc1ed41 497 Pfam PF00005 ABC transporter 21 170 3.7E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1636 f831b495bfb6663e1e5b81990a484fd7 142 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 141 2.6E-52 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Trebr_1636 f831b495bfb6663e1e5b81990a484fd7 142 SUPERFAMILY SSF89623 1 141 3.01E-55 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Trebr_1636 f831b495bfb6663e1e5b81990a484fd7 142 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 141 2.1E-55 T 13-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 Trebr_1636 f831b495bfb6663e1e5b81990a484fd7 142 Pfam PF02502 Ribose/Galactose Isomerase 3 140 1.1E-55 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Trebr_1636 f831b495bfb6663e1e5b81990a484fd7 142 Gene3D G3DSA:3.40.1400.10 1 142 1.4E-59 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Trebr_1636 f831b495bfb6663e1e5b81990a484fd7 142 PIRSF PIRSF005384 1 142 2.1E-56 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Trebr_0146 c769f3168db4fc6c5c02d6b3509be111 109 PIRSF PIRSF033490 3 108 6.3E-23 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 Trebr_0146 c769f3168db4fc6c5c02d6b3509be111 109 SUPERFAMILY SSF50118 1 107 1.8E-34 T 13-10-2018 Trebr_0146 c769f3168db4fc6c5c02d6b3509be111 109 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 7 106 4.8E-28 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 Trebr_0146 c769f3168db4fc6c5c02d6b3509be111 109 Gene3D G3DSA:2.30.30.110 2 109 2.3E-31 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor Trebr_2235 d1e16b71ef5ca9d0ba84491c893bd700 175 Gene3D G3DSA:3.30.70.940 1 106 1.1E-6 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_2235 d1e16b71ef5ca9d0ba84491c893bd700 175 Gene3D G3DSA:2.30.30.30 115 170 1.4E-10 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 Trebr_2235 d1e16b71ef5ca9d0ba84491c893bd700 175 SUPERFAMILY SSF50104 116 170 1.28E-7 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily Trebr_2235 d1e16b71ef5ca9d0ba84491c893bd700 175 SUPERFAMILY SSF82679 3 103 1.83E-5 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Trebr_2290 07a9eb8f4ae67a65049d6965d95a9e4b 118 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 9 112 6.8E-28 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2290 07a9eb8f4ae67a65049d6965d95a9e4b 118 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 5 115 23.372 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2290 07a9eb8f4ae67a65049d6965d95a9e4b 118 Pfam PF00237 Ribosomal protein L22p/L17e 11 112 1.5E-29 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Trebr_2290 07a9eb8f4ae67a65049d6965d95a9e4b 118 Gene3D G3DSA:3.90.470.10 3 118 3.5E-38 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_2290 07a9eb8f4ae67a65049d6965d95a9e4b 118 SUPERFAMILY SSF54843 5 115 7.72E-34 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_2290 07a9eb8f4ae67a65049d6965d95a9e4b 118 ProSitePatterns PS00464 Ribosomal protein L22 signature. 88 112 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_1557 db454ff1bbaa78b6d1027029a2748cba 517 Gene3D G3DSA:3.40.190.10 155 513 2.2E-134 T 13-10-2018 Trebr_1557 db454ff1bbaa78b6d1027029a2748cba 517 Gene3D G3DSA:3.40.190.10 60 424 2.2E-134 T 13-10-2018 Trebr_1557 db454ff1bbaa78b6d1027029a2748cba 517 SUPERFAMILY SSF53850 34 514 1.89E-87 T 13-10-2018 Trebr_1557 db454ff1bbaa78b6d1027029a2748cba 517 Pfam PF13416 Bacterial extracellular solute-binding protein 60 367 1.1E-16 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0790 5a6e0a7f445565b6b877b84a6730585b 360 Gene3D G3DSA:1.10.4030.30 36 187 5.2E-18 T 13-10-2018 Trebr_0790 5a6e0a7f445565b6b877b84a6730585b 360 Gene3D G3DSA:3.10.50.40 188 288 5.2E-18 T 13-10-2018 Trebr_0790 5a6e0a7f445565b6b877b84a6730585b 360 SUPERFAMILY SSF109998 35 210 1.33E-15 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily Trebr_0528 726cdc871a2803bd11f3665d2515cc33 224 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 56 208 7.3E-15 T 13-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like Trebr_0528 726cdc871a2803bd11f3665d2515cc33 224 Gene3D G3DSA:2.50.20.10 28 216 7.6E-29 T 13-10-2018 Trebr_0528 726cdc871a2803bd11f3665d2515cc33 224 SUPERFAMILY SSF89392 30 215 1.65E-24 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Trebr_1404 95362d1580941071ed34488a5d304983 242 Pfam PF02254 TrkA-N domain 4 119 1.2E-19 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Trebr_1404 95362d1580941071ed34488a5d304983 242 Gene3D G3DSA:3.40.50.720 1 135 1.0E-25 T 13-10-2018 Trebr_1404 95362d1580941071ed34488a5d304983 242 Pfam PF02080 TrkA-C domain 149 215 2.5E-10 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Trebr_1404 95362d1580941071ed34488a5d304983 242 SUPERFAMILY SSF116726 131 216 3.01E-13 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Trebr_1404 95362d1580941071ed34488a5d304983 242 SUPERFAMILY SSF51735 2 132 5.76E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1404 95362d1580941071ed34488a5d304983 242 Gene3D G3DSA:3.30.70.1450 136 216 4.4E-17 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 PRINTS PR00834 HtrA/DegQ protease family signature 303 320 5.1E-29 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 PRINTS PR00834 HtrA/DegQ protease family signature 200 212 5.1E-29 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 PRINTS PR00834 HtrA/DegQ protease family signature 404 416 5.1E-29 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 PRINTS PR00834 HtrA/DegQ protease family signature 271 295 5.1E-29 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 Pfam PF13365 Trypsin-like peptidase domain 191 331 1.3E-28 T 13-10-2018 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 SMART SM00228 368 446 4.9E-9 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 Pfam PF13180 PDZ domain 388 454 3.5E-9 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 SUPERFAMILY SSF50156 386 461 1.84E-14 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 SUPERFAMILY SSF50494 167 363 1.28E-44 T 13-10-2018 IPR009003 Peptidase S1, PA clan Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 Gene3D G3DSA:2.40.10.120 159 359 2.6E-48 T 13-10-2018 Trebr_1766 b7bf5c473db508d7a59f397213eb7fb0 562 Gene3D G3DSA:2.30.42.10 381 477 6.0E-12 T 13-10-2018 Trebr_1110 611afb71f0c63fdc1e7bd633dfa6695d 414 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 119 215 7.5E-7 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Trebr_1110 611afb71f0c63fdc1e7bd633dfa6695d 414 Gene3D G3DSA:3.30.420.40 2 215 1.5E-26 T 13-10-2018 Trebr_1110 611afb71f0c63fdc1e7bd633dfa6695d 414 SUPERFAMILY SSF53067 5 216 1.86E-24 T 13-10-2018 Trebr_1110 611afb71f0c63fdc1e7bd633dfa6695d 414 SUPERFAMILY SSF53067 304 410 1.44E-15 T 13-10-2018 Trebr_1110 611afb71f0c63fdc1e7bd633dfa6695d 414 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 291 384 1.8E-11 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Trebr_1110 611afb71f0c63fdc1e7bd633dfa6695d 414 Gene3D G3DSA:3.30.420.40 274 413 1.8E-18 T 13-10-2018 Trebr_1460 e17675065e340fa9dda57bc913753409 393 Pfam PF00027 Cyclic nucleotide-binding domain 190 275 6.9E-23 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_1460 e17675065e340fa9dda57bc913753409 393 Pfam PF00027 Cyclic nucleotide-binding domain 7 92 2.8E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_1460 e17675065e340fa9dda57bc913753409 393 SMART SM00100 170 288 7.3E-20 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_1460 e17675065e340fa9dda57bc913753409 393 SMART SM00100 1 104 0.14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_1460 e17675065e340fa9dda57bc913753409 393 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 238 255 - T 13-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site Trebr_1460 e17675065e340fa9dda57bc913753409 393 Gene3D G3DSA:2.60.120.10 1 124 4.3E-21 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_1460 e17675065e340fa9dda57bc913753409 393 SUPERFAMILY SSF51206 4 120 2.62E-21 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like Trebr_1460 e17675065e340fa9dda57bc913753409 393 SUPERFAMILY SSF51206 189 299 5.89E-30 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like Trebr_1460 e17675065e340fa9dda57bc913753409 393 Gene3D G3DSA:2.60.120.10 178 302 3.5E-33 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 467 125.653 T 13-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 Pfam PF13237 4Fe-4S dicluster domain 384 439 7.6E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 SUPERFAMILY SSF46548 347 458 2.09E-15 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 SUPERFAMILY SSF142019 124 316 2.75E-52 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 Gene3D G3DSA:1.10.1060.10 379 455 1.1E-7 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 428 439 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 Gene3D G3DSA:3.40.50.11540 153 305 9.7E-16 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 148 296 4.0E-47 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 26 457 7.0E-137 T 13-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Trebr_0857 88d97deaaaaf51b192a356ee8ff6702e 467 Pfam PF13375 RnfC Barrel sandwich hybrid domain 26 124 1.2E-28 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain Trebr_2441 e5602c064bd57dbc2a635e808a088b7d 646 Pfam PF01863 Protein of unknown function DUF45 541 639 1.5E-38 T 13-10-2018 IPR002725 Protein of unknown function DUF45 Trebr_2441 e5602c064bd57dbc2a635e808a088b7d 646 Gene3D G3DSA:3.30.2010.10 549 640 5.1E-18 T 13-10-2018 Trebr_2441 e5602c064bd57dbc2a635e808a088b7d 646 Pfam PF01420 Type I restriction modification DNA specificity domain 70 237 2.8E-16 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Trebr_2441 e5602c064bd57dbc2a635e808a088b7d 646 Pfam PF01420 Type I restriction modification DNA specificity domain 330 492 2.2E-25 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Trebr_2441 e5602c064bd57dbc2a635e808a088b7d 646 SUPERFAMILY SSF116734 58 275 1.57E-37 T 13-10-2018 Trebr_2441 e5602c064bd57dbc2a635e808a088b7d 646 SUPERFAMILY SSF116734 317 497 1.16E-46 T 13-10-2018 Trebr_2441 e5602c064bd57dbc2a635e808a088b7d 646 Gene3D G3DSA:3.90.220.20 50 273 3.7E-43 T 13-10-2018 Trebr_2441 e5602c064bd57dbc2a635e808a088b7d 646 Gene3D G3DSA:3.90.220.20 305 499 2.0E-41 T 13-10-2018 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 192 26.871 T 13-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 3 97 6.9E-23 T 13-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 170 181 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 SUPERFAMILY SSF54862 209 266 4.19E-14 T 13-10-2018 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 Pfam PF00037 4Fe-4S binding domain 164 183 8.6E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 SUPERFAMILY SSF54862 140 186 2.21E-12 T 13-10-2018 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 Gene3D G3DSA:3.20.20.20 36 109 8.8E-13 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 Gene3D G3DSA:3.30.70.20 201 267 1.3E-12 T 13-10-2018 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 Gene3D G3DSA:3.30.70.20 124 193 8.7E-14 T 13-10-2018 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 Pfam PF13187 4Fe-4S dicluster domain 217 259 5.3E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 246 257 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 Pfam PF04060 Putative Fe-S cluster 44 74 1.7E-12 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 Trebr_0852 e5197617eb5fb4678e60bbe8dc455a78 271 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 217 228 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_2483 15162235a9e930fc783db62c45746c58 648 Gene3D G3DSA:1.20.1480.50 340 432 3.4E-9 T 13-10-2018 Trebr_2483 15162235a9e930fc783db62c45746c58 648 SUPERFAMILY SSF55874 494 644 1.26E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2483 15162235a9e930fc783db62c45746c58 648 SUPERFAMILY SSF158472 376 425 5.75E-9 T 13-10-2018 Trebr_2483 15162235a9e930fc783db62c45746c58 648 Pfam PF06580 Histidine kinase 439 513 8.9E-19 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Trebr_2483 15162235a9e930fc783db62c45746c58 648 Gene3D G3DSA:3.30.565.10 493 647 1.1E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_2483 15162235a9e930fc783db62c45746c58 648 SMART SM00387 532 646 0.0023 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_2483 15162235a9e930fc783db62c45746c58 648 SMART SM00304 374 426 7.1E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_2483 15162235a9e930fc783db62c45746c58 648 Pfam PF00672 HAMP domain 375 423 1.1E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_2483 15162235a9e930fc783db62c45746c58 648 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 537 645 5.2E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0714 d54e5fe9521b37f766a285dc330e5cb9 331 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 37 316 4.5E-92 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Trebr_0714 d54e5fe9521b37f766a285dc330e5cb9 331 Gene3D G3DSA:3.40.190.170 29 331 1.2E-109 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Trebr_0714 d54e5fe9521b37f766a285dc330e5cb9 331 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 288 2.5E-76 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Trebr_0714 d54e5fe9521b37f766a285dc330e5cb9 331 PIRSF PIRSF006470 1 331 1.5E-101 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Trebr_2046 3c97723e5a814531f98e580205d8cfe8 108 SUPERFAMILY SSF46785 4 102 8.0E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2046 3c97723e5a814531f98e580205d8cfe8 108 Gene3D G3DSA:1.10.10.10 3 107 9.7E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2046 3c97723e5a814531f98e580205d8cfe8 108 Pfam PF03551 Transcriptional regulator PadR-like family 14 82 2.1E-17 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal Trebr_0126 99bed7a112033b7280f2786deef519c6 594 Gene3D G3DSA:3.40.50.1070 1 172 1.6E-86 T 13-10-2018 IPR038391 L-fucose isomerase, domain 1 superfamily KEGG: 00051+5.3.1.25 Trebr_0126 99bed7a112033b7280f2786deef519c6 594 Pfam PF07882 L-fucose isomerase, second N-terminal domain 172 356 4.0E-84 T 13-10-2018 IPR012889 L-fucose isomerase, N-terminal-2 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 Trebr_0126 99bed7a112033b7280f2786deef519c6 594 Pfam PF07881 L-fucose isomerase, first N-terminal domain 3 171 2.7E-82 T 13-10-2018 IPR012888 L-fucose isomerase, N-terminal-1 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 Trebr_0126 99bed7a112033b7280f2786deef519c6 594 TIGRFAM TIGR01089 fucI: L-fucose isomerase 3 593 9.2E-278 T 13-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 Trebr_0126 99bed7a112033b7280f2786deef519c6 594 Gene3D G3DSA:3.40.275.10 173 343 6.8E-65 T 13-10-2018 IPR038392 L-fucose isomerase, domain 2 superfamily KEGG: 00051+5.3.1.25 Trebr_0126 99bed7a112033b7280f2786deef519c6 594 Gene3D G3DSA:3.20.14.10 344 594 1.2E-116 T 13-10-2018 IPR038393 L-fucose isomerase, domain 3 superfamily KEGG: 00051+5.3.1.25 Trebr_0126 99bed7a112033b7280f2786deef519c6 594 SUPERFAMILY SSF50443 360 593 1.23E-114 T 13-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal Trebr_0126 99bed7a112033b7280f2786deef519c6 594 Hamap MF_01254 L-fucose isomerase [fucI]. 1 593 63.636 T 13-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 Trebr_0126 99bed7a112033b7280f2786deef519c6 594 Pfam PF02952 L-fucose isomerase, C-terminal domain 393 557 1.9E-49 T 13-10-2018 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 Trebr_0126 99bed7a112033b7280f2786deef519c6 594 SUPERFAMILY SSF53743 3 357 2.88E-136 T 13-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 Trebr_1318 dfa2572b7eb125c6e07c2d4af8ac63ec 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 4.5E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site Trebr_1318 dfa2572b7eb125c6e07c2d4af8ac63ec 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 30 1.2E-4 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site Trebr_1318 dfa2572b7eb125c6e07c2d4af8ac63ec 145 SUPERFAMILY SSF54523 37 143 3.88E-31 T 13-10-2018 Trebr_1318 dfa2572b7eb125c6e07c2d4af8ac63ec 145 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 10 144 1.3E-39 T 13-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Trebr_1318 dfa2572b7eb125c6e07c2d4af8ac63ec 145 Pfam PF08334 Type II secretion system (T2SS), protein G 35 143 1.0E-36 T 13-10-2018 IPR013545 Type II secretion system protein G Trebr_1318 dfa2572b7eb125c6e07c2d4af8ac63ec 145 Gene3D G3DSA:3.30.700.10 35 143 1.4E-35 T 13-10-2018 Trebr_1812 41ded53f4ee91c50075d923f0dd17994 394 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 71 140 2.0E-4 T 13-10-2018 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal Trebr_1812 41ded53f4ee91c50075d923f0dd17994 394 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 45 56 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_1812 41ded53f4ee91c50075d923f0dd17994 394 SUPERFAMILY SSF54862 5 57 3.79E-16 T 13-10-2018 Trebr_1812 41ded53f4ee91c50075d923f0dd17994 394 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 155 324 1.2E-30 T 13-10-2018 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal Trebr_1812 41ded53f4ee91c50075d923f0dd17994 394 Gene3D G3DSA:3.30.70.20 1 67 2.6E-16 T 13-10-2018 Trebr_1812 41ded53f4ee91c50075d923f0dd17994 394 Pfam PF12838 4Fe-4S dicluster domain 10 57 2.5E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_1812 41ded53f4ee91c50075d923f0dd17994 394 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 11 22 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0605 1d002e783eb5568a50e6a4f41d953290 261 SUPERFAMILY SSF53178 71 255 7.59E-52 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Trebr_0605 1d002e783eb5568a50e6a4f41d953290 261 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 73 243 1.4E-45 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Trebr_0605 1d002e783eb5568a50e6a4f41d953290 261 Pfam PF01195 Peptidyl-tRNA hydrolase 74 246 1.5E-47 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Trebr_0605 1d002e783eb5568a50e6a4f41d953290 261 Gene3D G3DSA:3.40.50.1470 70 259 1.2E-54 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Trebr_0605 1d002e783eb5568a50e6a4f41d953290 261 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 72 248 30.735 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Trebr_0818 5827fac23308557ead48332eba1fd1ef 213 SUPERFAMILY SSF51161 55 168 1.66E-35 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily Trebr_0818 5827fac23308557ead48332eba1fd1ef 213 Gene3D G3DSA:2.160.10.10 7 195 3.0E-48 T 13-10-2018 Trebr_0818 5827fac23308557ead48332eba1fd1ef 213 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 112 140 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Trebr_0818 5827fac23308557ead48332eba1fd1ef 213 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 138 4.8E-8 T 13-10-2018 IPR001451 Hexapeptide repeat Trebr_0491 099a47e6117983eb113b09592d42274e 307 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 5 144 9.1E-45 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 Gene3D G3DSA:3.40.50.1370 5 301 7.1E-107 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 38 60 2.1E-34 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 285 299 2.1E-34 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 131 148 2.1E-34 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 77 86 2.1E-34 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 224 233 2.1E-34 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 263 268 2.1E-34 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0491 099a47e6117983eb113b09592d42274e 307 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 152 301 9.9E-29 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 48 67 4.8E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 292 4.8E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 259 268 4.8E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 132 143 4.8E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 48 55 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 4 306 34.918 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0491 099a47e6117983eb113b09592d42274e 307 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 5 303 3.4E-102 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0491 099a47e6117983eb113b09592d42274e 307 SUPERFAMILY SSF53671 2 305 1.44E-96 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Trebr_0491 099a47e6117983eb113b09592d42274e 307 Gene3D G3DSA:3.40.50.1370 132 291 7.1E-107 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Trebr_1162 c8e2c460bb46bf50450020681073add0 331 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 14 311 1.1E-78 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Trebr_1162 c8e2c460bb46bf50450020681073add0 331 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 14 321 27.439 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Trebr_1162 c8e2c460bb46bf50450020681073add0 331 Gene3D G3DSA:3.40.50.300 18 304 2.0E-88 T 13-10-2018 Trebr_1162 c8e2c460bb46bf50450020681073add0 331 Pfam PF01715 IPP transferase 54 299 4.0E-73 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Trebr_1162 c8e2c460bb46bf50450020681073add0 331 SUPERFAMILY SSF52540 15 164 2.47E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1162 c8e2c460bb46bf50450020681073add0 331 Gene3D G3DSA:1.10.20.140 128 199 2.0E-88 T 13-10-2018 Trebr_1596 bf326274dab660211f5d40a25dde79d8 422 SUPERFAMILY SSF109604 190 392 3.45E-28 T 13-10-2018 Trebr_1596 bf326274dab660211f5d40a25dde79d8 422 Gene3D G3DSA:1.10.3210.10 10 192 9.4E-16 T 13-10-2018 Trebr_1596 bf326274dab660211f5d40a25dde79d8 422 Pfam PF13023 HD domain 199 397 2.7E-29 T 13-10-2018 IPR006674 HD domain Trebr_0062 d812c837a79ea4aa9556495a668cd4ee 406 PIRSF PIRSF001491 2 406 5.8E-153 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Trebr_0062 d812c837a79ea4aa9556495a668cd4ee 406 SUPERFAMILY SSF53649 1 405 1.96E-70 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Trebr_0062 d812c837a79ea4aa9556495a668cd4ee 406 Gene3D G3DSA:3.40.720.10 4 401 5.1E-153 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Trebr_0062 d812c837a79ea4aa9556495a668cd4ee 406 TIGRFAM TIGR01696 deoB: phosphopentomutase 5 394 1.1E-154 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Trebr_0062 d812c837a79ea4aa9556495a668cd4ee 406 Gene3D G3DSA:3.30.70.1250 98 218 5.1E-153 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Trebr_0062 d812c837a79ea4aa9556495a668cd4ee 406 Pfam PF01676 Metalloenzyme superfamily 4 390 8.0E-36 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Trebr_0062 d812c837a79ea4aa9556495a668cd4ee 406 Hamap MF_00740 Phosphopentomutase [deoB]. 3 402 51.134 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Trebr_0062 d812c837a79ea4aa9556495a668cd4ee 406 SUPERFAMILY SSF143856 103 218 4.84E-46 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Trebr_2327 7f9f9baa353362811087d08839744e67 518 SUPERFAMILY SSF46785 82 132 9.43E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2327 7f9f9baa353362811087d08839744e67 518 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 217 512 8.3E-103 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Trebr_2327 7f9f9baa353362811087d08839744e67 518 SUPERFAMILY SSF55681 243 514 6.76E-58 T 13-10-2018 Trebr_2327 7f9f9baa353362811087d08839744e67 518 Pfam PF01409 tRNA synthetases class II core domain (F) 243 511 2.9E-78 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 Trebr_2327 7f9f9baa353362811087d08839744e67 518 Gene3D G3DSA:3.30.930.10 215 517 3.4E-85 T 13-10-2018 Trebr_2327 7f9f9baa353362811087d08839744e67 518 Hamap MF_00282 Phenylalanine--tRNA ligase alpha subunit [pheS]. 9 515 35.167 T 13-10-2018 IPR022917 Phenylalanine-tRNA ligase alpha subunit, bacterial/archaeal GO:0004826 KEGG: 00970+6.1.1.20 Trebr_0187 dba9e950778eb49ebed4d7e87a5a328a 463 Gene3D G3DSA:3.40.190.10 28 462 4.1E-52 T 13-10-2018 Trebr_0187 dba9e950778eb49ebed4d7e87a5a328a 463 SUPERFAMILY SSF53850 28 460 1.39E-49 T 13-10-2018 Trebr_0187 dba9e950778eb49ebed4d7e87a5a328a 463 Pfam PF01547 Bacterial extracellular solute-binding protein 55 337 4.9E-22 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2253 7749ad500fbacda1f4ff481cfd1b277a 286 Gene3D G3DSA:3.40.1280.10 1 282 3.5E-55 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Trebr_2253 7749ad500fbacda1f4ff481cfd1b277a 286 Pfam PF04452 RNA methyltransferase 17 270 1.9E-43 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Trebr_2253 7749ad500fbacda1f4ff481cfd1b277a 286 PIRSF PIRSF015601 1 80 9.4E-7 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Trebr_2253 7749ad500fbacda1f4ff481cfd1b277a 286 PIRSF PIRSF015601 91 276 6.8E-40 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Trebr_2253 7749ad500fbacda1f4ff481cfd1b277a 286 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 97 275 5.9E-29 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Trebr_2253 7749ad500fbacda1f4ff481cfd1b277a 286 SUPERFAMILY SSF75217 96 273 2.75E-34 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases Trebr_2059 0796d4e598dffade5640727e8c30a357 271 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 4.0E-12 T 13-10-2018 Trebr_2059 0796d4e598dffade5640727e8c30a357 271 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 266 5.7E-22 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_2214 119c239d826dc65f39562528e6a1dd8e 367 SUPERFAMILY SSF53474 64 362 2.11E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2214 119c239d826dc65f39562528e6a1dd8e 367 Pfam PF12146 Serine aminopeptidase, S33 106 217 1.4E-10 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 Trebr_2214 119c239d826dc65f39562528e6a1dd8e 367 Gene3D G3DSA:3.40.50.1820 55 364 5.5E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_1263 7720e111448a563414e2d55d1c5e64de 512 Gene3D G3DSA:3.40.50.300 1 249 1.4E-55 T 13-10-2018 Trebr_1263 7720e111448a563414e2d55d1c5e64de 512 Pfam PF00005 ABC transporter 276 433 3.9E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1263 7720e111448a563414e2d55d1c5e64de 512 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1263 7720e111448a563414e2d55d1c5e64de 512 Gene3D G3DSA:3.40.50.300 253 498 6.6E-41 T 13-10-2018 Trebr_1263 7720e111448a563414e2d55d1c5e64de 512 Pfam PF00005 ABC transporter 22 171 2.3E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1263 7720e111448a563414e2d55d1c5e64de 512 SUPERFAMILY SSF52540 5 231 6.96E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1263 7720e111448a563414e2d55d1c5e64de 512 SMART SM00382 30 219 4.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1263 7720e111448a563414e2d55d1c5e64de 512 SUPERFAMILY SSF52540 257 494 2.45E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0063 8786a78a5c45622745a0cbea7385f85a 268 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 69 84 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 Trebr_0063 8786a78a5c45622745a0cbea7385f85a 268 Pfam PF01048 Phosphorylase superfamily 23 227 2.3E-39 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Trebr_0063 8786a78a5c45622745a0cbea7385f85a 268 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 11 253 2.6E-94 T 13-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 Trebr_0063 8786a78a5c45622745a0cbea7385f85a 268 SUPERFAMILY SSF53167 10 253 1.7E-71 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Trebr_0063 8786a78a5c45622745a0cbea7385f85a 268 Gene3D G3DSA:3.40.50.1580 9 259 1.3E-83 T 13-10-2018 Trebr_1922 f223ba21548d686139694650ed35afdc 441 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 142 159 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 Trebr_1922 f223ba21548d686139694650ed35afdc 441 Gene3D G3DSA:3.40.190.10 146 363 8.0E-48 T 13-10-2018 Trebr_1922 f223ba21548d686139694650ed35afdc 441 SUPERFAMILY SSF53850 42 432 9.88E-44 T 13-10-2018 Trebr_1922 f223ba21548d686139694650ed35afdc 441 Gene3D G3DSA:3.40.190.10 51 361 8.0E-48 T 13-10-2018 Trebr_1922 f223ba21548d686139694650ed35afdc 441 Pfam PF01547 Bacterial extracellular solute-binding protein 49 339 1.4E-26 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0174 304537cc0fc1ee7e96626908ccd7cc24 559 SUPERFAMILY SSF161098 334 545 1.13E-37 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0174 304537cc0fc1ee7e96626908ccd7cc24 559 SUPERFAMILY SSF53850 160 312 3.26E-9 T 13-10-2018 Trebr_0174 304537cc0fc1ee7e96626908ccd7cc24 559 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 321 554 1.2E-73 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Trebr_0174 304537cc0fc1ee7e96626908ccd7cc24 559 Gene3D G3DSA:1.10.3720.10 340 557 4.1E-33 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0174 304537cc0fc1ee7e96626908ccd7cc24 559 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 361 554 9.5E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0174 304537cc0fc1ee7e96626908ccd7cc24 559 Gene3D G3DSA:3.40.190.10 194 330 2.3E-9 T 13-10-2018 Trebr_1622 b14b444872142ecbe908385995cb6319 504 Pfam PF00425 chorismate binding enzyme 235 493 9.8E-94 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Trebr_1622 b14b444872142ecbe908385995cb6319 504 PRINTS PR00095 Anthranilate synthase component I signature 435 449 2.4E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Trebr_1622 b14b444872142ecbe908385995cb6319 504 PRINTS PR00095 Anthranilate synthase component I signature 337 350 2.4E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Trebr_1622 b14b444872142ecbe908385995cb6319 504 PRINTS PR00095 Anthranilate synthase component I signature 351 364 2.4E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Trebr_1622 b14b444872142ecbe908385995cb6319 504 PRINTS PR00095 Anthranilate synthase component I signature 450 464 2.4E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Trebr_1622 b14b444872142ecbe908385995cb6319 504 SUPERFAMILY SSF56322 16 501 1.96E-134 T 13-10-2018 IPR005801 ADC synthase GO:0009058 Trebr_1622 b14b444872142ecbe908385995cb6319 504 Gene3D G3DSA:3.60.120.10 10 504 1.1E-142 T 13-10-2018 IPR005801 ADC synthase GO:0009058 Trebr_1622 b14b444872142ecbe908385995cb6319 504 Pfam PF04715 Anthranilate synthase component I, N terminal region 15 186 3.1E-14 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Trebr_2355 f1caf2f4080ad373cd1b41c36ad79436 486 SUPERFAMILY SSF53649 2 456 8.68E-107 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Trebr_2355 f1caf2f4080ad373cd1b41c36ad79436 486 Pfam PF00884 Sulfatase 4 365 5.5E-59 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Trebr_2355 f1caf2f4080ad373cd1b41c36ad79436 486 ProSitePatterns PS00149 Sulfatases signature 2. 93 103 - T 13-10-2018 IPR024607 Sulfatase, conserved site Trebr_2355 f1caf2f4080ad373cd1b41c36ad79436 486 Gene3D G3DSA:3.40.720.10 4 459 3.3E-117 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 Pfam PF13365 Trypsin-like peptidase domain 149 288 1.3E-34 T 13-10-2018 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 PRINTS PR00834 HtrA/DegQ protease family signature 222 246 5.7E-47 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 PRINTS PR00834 HtrA/DegQ protease family signature 386 398 5.7E-47 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 PRINTS PR00834 HtrA/DegQ protease family signature 281 298 5.7E-47 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 PRINTS PR00834 HtrA/DegQ protease family signature 158 170 5.7E-47 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 PRINTS PR00834 HtrA/DegQ protease family signature 179 199 5.7E-47 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 PRINTS PR00834 HtrA/DegQ protease family signature 259 276 5.7E-47 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 SUPERFAMILY SSF50494 115 323 3.62E-61 T 13-10-2018 IPR009003 Peptidase S1, PA clan Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 SMART SM00228 344 428 5.7E-4 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 Gene3D G3DSA:2.30.42.10 326 440 1.8E-22 T 13-10-2018 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 Pfam PF13180 PDZ domain 338 437 1.1E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 Gene3D G3DSA:2.40.10.10 213 325 7.5E-43 T 13-10-2018 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 SUPERFAMILY SSF50156 286 428 1.6E-16 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_1114 fc3173892f78e8933c267634ebf5c60b 440 Gene3D G3DSA:2.40.10.10 97 210 4.3E-29 T 13-10-2018 Trebr_2017 6b23a8d392e16128a4666a2ca4a74913 387 Gene3D G3DSA:1.10.3720.10 143 378 4.6E-46 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2017 6b23a8d392e16128a4666a2ca4a74913 387 SUPERFAMILY SSF161098 23 386 5.32E-54 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2017 6b23a8d392e16128a4666a2ca4a74913 387 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 170 380 6.0E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1244 3547f9c7a2e0328faa678cce1cb3a00e 295 Pfam PF02219 Methylenetetrahydrofolate reductase 3 281 1.3E-76 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Trebr_1244 3547f9c7a2e0328faa678cce1cb3a00e 295 Gene3D G3DSA:3.20.20.220 2 290 6.4E-93 T 13-10-2018 Trebr_1244 3547f9c7a2e0328faa678cce1cb3a00e 295 SUPERFAMILY SSF51730 1 284 7.65E-87 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like Trebr_1244 3547f9c7a2e0328faa678cce1cb3a00e 295 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 14 283 1.1E-90 T 13-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 Trebr_0302 3b28010c109ff5653ae4a10351514030 414 Gene3D G3DSA:3.40.50.12580 232 375 1.7E-9 T 13-10-2018 Trebr_0302 3b28010c109ff5653ae4a10351514030 414 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 255 332 1.0E-9 T 13-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 Trebr_0302 3b28010c109ff5653ae4a10351514030 414 SUPERFAMILY SSF53756 132 406 2.93E-7 T 13-10-2018 Trebr_1867 3e2d78b3140a8f3952fd0e53a26ae3ff 106 SUPERFAMILY SSF47413 4 70 4.02E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1867 3e2d78b3140a8f3952fd0e53a26ae3ff 106 SMART SM00530 11 66 1.1E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1867 3e2d78b3140a8f3952fd0e53a26ae3ff 106 Pfam PF01381 Helix-turn-helix 12 64 9.7E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1867 3e2d78b3140a8f3952fd0e53a26ae3ff 106 Gene3D G3DSA:1.10.260.40 1 71 1.1E-16 T 13-10-2018 Trebr_1322 0db550c993fc7e62708e74f16d74c331 206 Gene3D G3DSA:1.25.40.10 113 204 7.9E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1322 0db550c993fc7e62708e74f16d74c331 206 Gene3D G3DSA:2.60.40.1120 29 112 1.1E-5 T 13-10-2018 Trebr_1322 0db550c993fc7e62708e74f16d74c331 206 Pfam PF14559 Tetratricopeptide repeat 119 180 1.0E-5 T 13-10-2018 Trebr_1322 0db550c993fc7e62708e74f16d74c331 206 SUPERFAMILY SSF48452 120 190 2.14E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1322 0db550c993fc7e62708e74f16d74c331 206 SUPERFAMILY SSF49452 28 93 5.69E-8 T 13-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 Trebr_0704 7dc4234aa3c7aa005373d91c825ec182 223 SUPERFAMILY SSF109755 2 215 3.98E-52 T 13-10-2018 Trebr_0704 7dc4234aa3c7aa005373d91c825ec182 223 Pfam PF01895 PhoU domain 19 103 3.2E-18 T 13-10-2018 IPR026022 PhoU domain Trebr_0704 7dc4234aa3c7aa005373d91c825ec182 223 Pfam PF01895 PhoU domain 119 204 1.8E-16 T 13-10-2018 IPR026022 PhoU domain Trebr_0704 7dc4234aa3c7aa005373d91c825ec182 223 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 3 212 2.8E-53 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Trebr_0704 7dc4234aa3c7aa005373d91c825ec182 223 Gene3D G3DSA:1.20.58.220 1 216 1.8E-60 T 13-10-2018 IPR038078 PhoU-like domain superfamily Trebr_0704 7dc4234aa3c7aa005373d91c825ec182 223 PIRSF PIRSF003107 1 218 1.8E-54 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 2 411 39.736 T 13-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 Gene3D G3DSA:1.10.240.10 221 321 1.1E-26 T 13-10-2018 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 SUPERFAMILY SSF52374 4 315 2.81E-91 T 13-10-2018 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 Gene3D G3DSA:3.10.290.10 322 411 5.2E-15 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 Gene3D G3DSA:3.40.50.620 1 220 1.7E-80 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 Pfam PF00579 tRNA synthetases class I (W and Y) 29 315 4.0E-73 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 50 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 160 175 3.3E-27 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 214 226 3.3E-27 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 44 66 3.3E-27 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 181 203 3.3E-27 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 1 411 2.8E-115 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Trebr_0931 f2e27971af85113a4cb2091c5f6fbb75 412 SUPERFAMILY SSF55174 324 411 3.3E-10 T 13-10-2018 Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 SMART SM00825 Beta-ketoacyl synthase 6 418 2.0E-13 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 PIRSF PIRSF000447 1 418 6.1E-159 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 SUPERFAMILY SSF53901 3 414 1.13E-72 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 Gene3D G3DSA:3.40.47.10 1 257 4.5E-86 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 249 2.6E-55 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 414 1.4E-167 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 Gene3D G3DSA:3.40.47.10 259 405 2.2E-48 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_2153 52f1998fda5a05e69ef9e46ba8ae2fd8 419 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 257 371 1.5E-35 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Trebr_2137 6d2a0c15a944339a7419830c3b1dfbab 330 SUPERFAMILY SSF52833 32 179 6.81E-15 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_2137 6d2a0c15a944339a7419830c3b1dfbab 330 Gene3D G3DSA:3.40.30.10 33 174 1.3E-18 T 13-10-2018 Trebr_2137 6d2a0c15a944339a7419830c3b1dfbab 330 Pfam PF13899 Thioredoxin-like 33 145 3.0E-9 T 13-10-2018 Trebr_2224 610de1e9a2e1df81f1fdeaf88d35fa7b 279 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 274 2.1E-26 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_2224 610de1e9a2e1df81f1fdeaf88d35fa7b 279 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 2.9E-12 T 13-10-2018 Trebr_2450 affd9e6aeb2fd00c550a7902035ed246 74 Pfam PF12728 Helix-turn-helix domain 17 66 3.9E-7 T 13-10-2018 Trebr_1001 73d271aaeacacf52d0ccdac991388ff9 437 SUPERFAMILY SSF56954 4 420 9.02E-57 T 13-10-2018 Trebr_1001 73d271aaeacacf52d0ccdac991388ff9 437 Pfam PF02321 Outer membrane efflux protein 231 420 1.4E-13 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Trebr_1001 73d271aaeacacf52d0ccdac991388ff9 437 Pfam PF02321 Outer membrane efflux protein 27 209 1.5E-25 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Trebr_1001 73d271aaeacacf52d0ccdac991388ff9 437 Gene3D G3DSA:1.20.1600.10 21 425 1.5E-58 T 13-10-2018 Trebr_1529 9ed66a7192f9ef510aed8e2edf384efa 288 SMART SM00478 44 194 4.3E-33 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Trebr_1529 9ed66a7192f9ef510aed8e2edf384efa 288 Gene3D G3DSA:1.10.340.30 26 138 1.1E-56 T 13-10-2018 Trebr_1529 9ed66a7192f9ef510aed8e2edf384efa 288 Pfam PF00633 Helix-hairpin-helix motif 104 131 5.4E-10 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Trebr_1529 9ed66a7192f9ef510aed8e2edf384efa 288 Gene3D G3DSA:1.10.1670.10 17 198 1.1E-56 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Trebr_1529 9ed66a7192f9ef510aed8e2edf384efa 288 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 40 136 6.1E-12 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Trebr_1529 9ed66a7192f9ef510aed8e2edf384efa 288 SUPERFAMILY SSF48150 10 198 7.22E-51 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Trebr_0661 0e6df4c07ad26a1e5f9203fa29a221da 465 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 141 8.9E-15 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Trebr_0661 0e6df4c07ad26a1e5f9203fa29a221da 465 SUPERFAMILY SSF52540 12 193 7.57E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0661 0e6df4c07ad26a1e5f9203fa29a221da 465 Pfam PF01926 50S ribosome-binding GTPase 13 133 1.9E-19 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 Trebr_0661 0e6df4c07ad26a1e5f9203fa29a221da 465 Gene3D G3DSA:3.40.50.300 3 193 6.0E-36 T 13-10-2018 Trebr_0661 0e6df4c07ad26a1e5f9203fa29a221da 465 Gene3D G3DSA:3.40.50.11410 348 460 2.5E-33 T 13-10-2018 Trebr_0661 0e6df4c07ad26a1e5f9203fa29a221da 465 Gene3D G3DSA:3.40.50.11420 199 284 1.8E-26 T 13-10-2018 Trebr_0768 439e98857225b6df1016183adff5dc85 348 Pfam PF00152 tRNA synthetases class II (D, K and N) 1 344 3.4E-37 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0768 439e98857225b6df1016183adff5dc85 348 Gene3D G3DSA:3.30.930.10 1 346 2.2E-77 T 13-10-2018 Trebr_0768 439e98857225b6df1016183adff5dc85 348 SUPERFAMILY SSF55681 2 343 1.41E-57 T 13-10-2018 Trebr_1478 0f3f9ca14f1153d159df02db63071cea 240 SUPERFAMILY SSF46894 176 238 9.52E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_1478 0f3f9ca14f1153d159df02db63071cea 240 Gene3D G3DSA:1.10.10.10 156 239 4.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1478 0f3f9ca14f1153d159df02db63071cea 240 SMART SM00421 176 233 0.0018 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1478 0f3f9ca14f1153d159df02db63071cea 240 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 230 2.0E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_0317 dbb2c1f21f7e1f0d690c71866c29a554 280 ProSitePatterns PS01229 Hypothetical cof family signature 2. 228 250 - T 13-10-2018 Trebr_0317 dbb2c1f21f7e1f0d690c71866c29a554 280 Gene3D G3DSA:3.40.50.1000 15 276 1.4E-62 T 13-10-2018 IPR023214 HAD superfamily Trebr_0317 dbb2c1f21f7e1f0d690c71866c29a554 280 Gene3D G3DSA:3.30.1240.10 99 203 1.4E-62 T 13-10-2018 Trebr_0317 dbb2c1f21f7e1f0d690c71866c29a554 280 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 15 275 4.6E-47 T 13-10-2018 IPR000150 Cof family GO:0016787 Trebr_0317 dbb2c1f21f7e1f0d690c71866c29a554 280 Pfam PF08282 haloacid dehalogenase-like hydrolase 16 275 5.0E-52 T 13-10-2018 Trebr_0317 dbb2c1f21f7e1f0d690c71866c29a554 280 SUPERFAMILY SSF56784 15 279 1.56E-62 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_0317 dbb2c1f21f7e1f0d690c71866c29a554 280 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 15 247 2.3E-24 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Trebr_0157 6814fce6d4087725290ad634aa1157d7 230 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 192 202 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0157 6814fce6d4087725290ad634aa1157d7 230 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 223 2.4E-52 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0157 6814fce6d4087725290ad634aa1157d7 230 SUPERFAMILY SSF53681 120 228 4.25E-30 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0157 6814fce6d4087725290ad634aa1157d7 230 Gene3D G3DSA:3.40.50.1860 4 223 6.0E-80 T 13-10-2018 Trebr_0157 6814fce6d4087725290ad634aa1157d7 230 SUPERFAMILY SSF53681 1 113 1.99E-34 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Trebr_0157 6814fce6d4087725290ad634aa1157d7 230 Gene3D G3DSA:3.40.50.1860 104 214 6.0E-80 T 13-10-2018 Trebr_0157 6814fce6d4087725290ad634aa1157d7 230 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 5.5E-68 T 13-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 Trebr_1354 2a937172d65226c7c2393c7da68dbe81 213 Gene3D G3DSA:3.40.50.1000 3 192 1.0E-35 T 13-10-2018 IPR023214 HAD superfamily Trebr_1354 2a937172d65226c7c2393c7da68dbe81 213 SUPERFAMILY SSF56784 3 193 9.24E-29 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_1354 2a937172d65226c7c2393c7da68dbe81 213 Pfam PF13419 Haloacid dehalogenase-like hydrolase 95 185 1.1E-9 T 13-10-2018 Trebr_1354 2a937172d65226c7c2393c7da68dbe81 213 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 139 189 5.8E-15 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_1354 2a937172d65226c7c2393c7da68dbe81 213 Gene3D G3DSA:1.10.150.240 17 87 1.0E-35 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Trebr_1652 be6fa878f058e68b88c026097446cf4c 396 Pfam PF14897 EpsG family 38 352 7.6E-42 T 13-10-2018 Trebr_1558 d246d6afdaa90e7a3c7958ef228a0a39 292 Gene3D G3DSA:1.10.3720.10 3 283 3.4E-66 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1558 d246d6afdaa90e7a3c7958ef228a0a39 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 285 1.5E-9 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1558 d246d6afdaa90e7a3c7958ef228a0a39 292 SUPERFAMILY SSF161098 15 292 1.39E-54 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0216 28a4fbd3ccfe42d96e9ba9d23615c534 458 Pfam PF02321 Outer membrane efflux protein 264 453 5.9E-19 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Trebr_0216 28a4fbd3ccfe42d96e9ba9d23615c534 458 Pfam PF02321 Outer membrane efflux protein 40 237 6.7E-21 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Trebr_0216 28a4fbd3ccfe42d96e9ba9d23615c534 458 SUPERFAMILY SSF56954 15 453 2.49E-61 T 13-10-2018 Trebr_0216 28a4fbd3ccfe42d96e9ba9d23615c534 458 Gene3D G3DSA:1.20.1600.10 36 455 8.1E-65 T 13-10-2018 Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 Pfam PF00571 CBS domain 110 152 6.9E-4 T 13-10-2018 IPR000644 CBS domain Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 10 489 7.2E-113 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 PIRSF PIRSF000130 7 501 3.7E-138 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 SMART SM01240 8 489 1.5E-177 T 13-10-2018 Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 Gene3D G3DSA:3.20.20.70 3 499 8.2E-150 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 SUPERFAMILY SSF54631 110 214 8.66E-20 T 13-10-2018 Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 SMART SM00116 172 220 0.33 T 13-10-2018 IPR000644 CBS domain Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 SMART SM00116 102 157 0.43 T 13-10-2018 IPR000644 CBS domain Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 SUPERFAMILY SSF51412 4 493 1.13E-102 T 13-10-2018 Trebr_1826 bb465063d9f6dee8208dc168f17545d2 501 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 309 321 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Trebr_2523 24d7dda84a70a14ace1205087eb6d78a 231 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 3 231 1.4E-62 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_2523 24d7dda84a70a14ace1205087eb6d78a 231 Pfam PF01048 Phosphorylase superfamily 3 228 8.5E-47 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Trebr_2523 24d7dda84a70a14ace1205087eb6d78a 231 Gene3D G3DSA:3.40.50.1580 1 231 1.9E-61 T 13-10-2018 Trebr_2523 24d7dda84a70a14ace1205087eb6d78a 231 SUPERFAMILY SSF53167 3 231 1.26E-60 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Trebr_0691 7c8c7a2c7ec8e99d774503a1fdcb3e42 189 Pfam PF03861 ANTAR domain 131 184 5.9E-14 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 Trebr_0691 7c8c7a2c7ec8e99d774503a1fdcb3e42 189 SUPERFAMILY SSF52172 3 184 8.79E-33 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0691 7c8c7a2c7ec8e99d774503a1fdcb3e42 189 Gene3D G3DSA:1.10.10.10 134 189 3.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0691 7c8c7a2c7ec8e99d774503a1fdcb3e42 189 SMART SM01012 129 184 1.9E-11 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 Trebr_0691 7c8c7a2c7ec8e99d774503a1fdcb3e42 189 Gene3D G3DSA:3.40.50.2300 2 133 4.8E-8 T 13-10-2018 Trebr_0691 7c8c7a2c7ec8e99d774503a1fdcb3e42 189 Pfam PF00072 Response regulator receiver domain 4 104 3.5E-5 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_2284 32c0d2b9b69d685ea228f36aa464aaba 104 SUPERFAMILY SSF50104 2 102 7.22E-31 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily Trebr_2284 32c0d2b9b69d685ea228f36aa464aaba 104 SMART SM00739 6 33 5.8E-4 T 13-10-2018 IPR005824 KOW Trebr_2284 32c0d2b9b69d685ea228f36aa464aaba 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 10 27 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2284 32c0d2b9b69d685ea228f36aa464aaba 104 Gene3D G3DSA:2.30.30.30 1 103 1.4E-35 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 Trebr_2284 32c0d2b9b69d685ea228f36aa464aaba 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 42 103 4.3E-23 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2284 32c0d2b9b69d685ea228f36aa464aaba 104 Pfam PF00467 KOW motif 9 39 2.1E-6 T 13-10-2018 IPR005824 KOW Trebr_2284 32c0d2b9b69d685ea228f36aa464aaba 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 5 103 8.1E-35 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2284 32c0d2b9b69d685ea228f36aa464aaba 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 5 98 19.285 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0813 b906cbcb2a37ec614d76cd4434b20c18 350 Gene3D G3DSA:1.20.1090.10 160 348 2.8E-41 T 13-10-2018 Trebr_0813 b906cbcb2a37ec614d76cd4434b20c18 350 TIGRFAM TIGR04425 P_lya_rel_AroB: putative sugar phosphate phospholyase (cyclizing) 3 347 1.4E-140 T 13-10-2018 IPR030957 Putative sugar phosphate phospholyase (cyclising) Trebr_0813 b906cbcb2a37ec614d76cd4434b20c18 350 PIRSF PIRSF001455 1 347 3.6E-83 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Trebr_0813 b906cbcb2a37ec614d76cd4434b20c18 350 Pfam PF01761 3-dehydroquinate synthase 56 311 1.1E-68 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Trebr_0813 b906cbcb2a37ec614d76cd4434b20c18 350 Gene3D G3DSA:3.40.50.1970 3 159 2.8E-41 T 13-10-2018 Trebr_0813 b906cbcb2a37ec614d76cd4434b20c18 350 SUPERFAMILY SSF56796 21 345 1.96E-67 T 13-10-2018 Trebr_2338 34229444944d4f59d419c83512eac5c0 364 SUPERFAMILY SSF53448 8 261 2.6E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2338 34229444944d4f59d419c83512eac5c0 364 Pfam PF00535 Glycosyl transferase family 2 11 140 8.2E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_2107 5b97a10f120323c54af84d62b16fbbcc 424 Pfam PF09028 Mac 1 206 258 5.3E-7 T 13-10-2018 IPR015117 Ig protease IdeS GO:0008233 Trebr_2107 5b97a10f120323c54af84d62b16fbbcc 424 Gene3D G3DSA:3.90.70.10 305 407 8.0E-8 T 13-10-2018 Trebr_2107 5b97a10f120323c54af84d62b16fbbcc 424 SUPERFAMILY SSF54001 186 374 4.12E-19 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Trebr_1259 4daea53d4323b1a5c6d8ac7ea1c7b39f 280 Hamap MF_00361 NAD kinase [nadK]. 2 274 28.038 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Trebr_1259 4daea53d4323b1a5c6d8ac7ea1c7b39f 280 Gene3D G3DSA:3.40.50.10330 47 274 2.9E-68 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Trebr_1259 4daea53d4323b1a5c6d8ac7ea1c7b39f 280 Gene3D G3DSA:2.60.200.30 114 251 2.9E-68 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Trebr_1259 4daea53d4323b1a5c6d8ac7ea1c7b39f 280 SUPERFAMILY SSF111331 3 275 1.15E-68 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Trebr_1259 4daea53d4323b1a5c6d8ac7ea1c7b39f 280 Pfam PF01513 ATP-NAD kinase 48 254 1.0E-48 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Trebr_1267 fae871355d4680b350e10436659aac60 639 Gene3D G3DSA:1.10.10.10 187 254 5.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1267 fae871355d4680b350e10436659aac60 639 Pfam PF00773 RNB domain 485 534 8.3E-12 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Trebr_1267 fae871355d4680b350e10436659aac60 639 SUPERFAMILY SSF50249 256 577 8.57E-73 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1267 fae871355d4680b350e10436659aac60 639 Pfam PF00773 RNB domain 271 473 6.1E-34 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Trebr_1267 fae871355d4680b350e10436659aac60 639 SUPERFAMILY SSF50249 580 639 8.22E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1267 fae871355d4680b350e10436659aac60 639 SMART SM00955 264 536 2.3E-56 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Trebr_2085 4c800261e87ae7f27931f2f116f15dec 199 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 3 188 1.7E-48 T 13-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 Trebr_2085 4c800261e87ae7f27931f2f116f15dec 199 Pfam PF01965 DJ-1/PfpI family 2 176 6.5E-47 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Trebr_2085 4c800261e87ae7f27931f2f116f15dec 199 SUPERFAMILY SSF52317 1 193 6.97E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_2085 4c800261e87ae7f27931f2f116f15dec 199 Gene3D G3DSA:3.40.50.880 1 196 2.9E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1586 c979972bc7869f43443569e3ae025af0 208 ProSitePatterns PS01331 Thymidylate kinase signature. 92 104 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Trebr_1586 c979972bc7869f43443569e3ae025af0 208 SUPERFAMILY SSF52540 6 202 6.64E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1586 c979972bc7869f43443569e3ae025af0 208 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 196 1.2E-44 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Trebr_1586 c979972bc7869f43443569e3ae025af0 208 Gene3D G3DSA:3.40.50.300 4 205 2.4E-49 T 13-10-2018 Trebr_1586 c979972bc7869f43443569e3ae025af0 208 Pfam PF02223 Thymidylate kinase 9 196 6.0E-38 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 Trebr_1586 c979972bc7869f43443569e3ae025af0 208 Hamap MF_00165 Thymidylate kinase [tmk]. 5 204 20.38 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Trebr_2251 f0d0dab8d7fcea1a4e0914ec9f6da8db 379 Gene3D G3DSA:3.40.50.300 128 309 6.8E-54 T 13-10-2018 Trebr_2251 f0d0dab8d7fcea1a4e0914ec9f6da8db 379 SMART SM00382 160 302 2.9E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2251 f0d0dab8d7fcea1a4e0914ec9f6da8db 379 Pfam PF00158 Sigma-54 interaction domain 140 305 1.3E-53 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Trebr_2251 f0d0dab8d7fcea1a4e0914ec9f6da8db 379 SUPERFAMILY SSF52540 139 373 3.95E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2251 f0d0dab8d7fcea1a4e0914ec9f6da8db 379 Gene3D G3DSA:1.10.8.60 310 378 1.5E-17 T 13-10-2018 Trebr_2251 f0d0dab8d7fcea1a4e0914ec9f6da8db 379 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 345 354 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Trebr_2251 f0d0dab8d7fcea1a4e0914ec9f6da8db 379 SUPERFAMILY SSF52172 29 185 8.94E-10 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_2251 f0d0dab8d7fcea1a4e0914ec9f6da8db 379 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Trebr_0920 56fd5b3fc7b8a0fa00dde909c1d63269 399 Gene3D G3DSA:3.40.718.10 2 399 2.6E-173 T 13-10-2018 Trebr_0920 56fd5b3fc7b8a0fa00dde909c1d63269 399 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 3 398 2.4E-148 T 13-10-2018 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Trebr_0920 56fd5b3fc7b8a0fa00dde909c1d63269 399 PIRSF PIRSF000108 1 399 6.9E-185 T 13-10-2018 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Trebr_0920 56fd5b3fc7b8a0fa00dde909c1d63269 399 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 11 394 4.1E-48 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Trebr_0920 56fd5b3fc7b8a0fa00dde909c1d63269 399 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 269 288 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Trebr_0920 56fd5b3fc7b8a0fa00dde909c1d63269 399 SUPERFAMILY SSF53659 1 398 9.46E-124 T 13-10-2018 Trebr_0920 56fd5b3fc7b8a0fa00dde909c1d63269 399 SMART SM01329 9 394 1.7E-93 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Trebr_0115 6ad426bf1ec088d74bb5c5c405e2e832 1005 Gene3D G3DSA:2.60.40.10 550 651 2.9E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0115 6ad426bf1ec088d74bb5c5c405e2e832 1005 Gene3D G3DSA:2.60.40.10 183 313 1.0E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0115 6ad426bf1ec088d74bb5c5c405e2e832 1005 Gene3D G3DSA:2.60.40.10 333 442 7.8E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0115 6ad426bf1ec088d74bb5c5c405e2e832 1005 Gene3D G3DSA:2.60.40.10 443 549 1.2E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0115 6ad426bf1ec088d74bb5c5c405e2e832 1005 Pfam PF04773 FecR protein 81 172 6.7E-6 T 13-10-2018 IPR006860 FecR protein Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 SMART SM00060 238 355 18.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 SMART SM00060 43 120 12.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 SMART SM00060 913 993 110.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 SMART SM00060 733 866 170.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 SMART SM00060 134 221 7.5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 SUPERFAMILY SSF49265 44 132 1.43E-6 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 Gene3D G3DSA:2.60.40.10 913 1015 1.1E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 Gene3D G3DSA:2.60.40.10 237 367 1.4E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 Gene3D G3DSA:2.60.40.10 41 130 3.7E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 Gene3D G3DSA:2.60.40.10 140 227 1.2E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1409 4ee93eee0eec257cfd6a0e3c3c186691 1321 SUPERFAMILY SSF49265 148 992 4.89E-15 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 Pfam PF00005 ABC transporter 18 184 2.3E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 SMART SM00382 26 231 1.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 SMART SM00382 344 511 2.6 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 Gene3D G3DSA:3.40.50.300 283 543 7.1E-40 T 13-10-2018 Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 Gene3D G3DSA:3.40.50.300 2 279 1.7E-60 T 13-10-2018 Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 SUPERFAMILY SSF52540 2 237 1.86E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 Pfam PF00005 ABC transporter 335 466 4.5E-11 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 Pfam PF12848 ABC transporter 224 305 9.2E-17 T 13-10-2018 IPR032781 ABC-transporter extension domain Trebr_1287 dcd69a1efee64139ebe25c7f5b63962f 545 SUPERFAMILY SSF52540 296 521 7.73E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0706 ce1cb12a263622900dcbf215c7efaa38 264 SMART SM00382 31 226 1.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0706 ce1cb12a263622900dcbf215c7efaa38 264 Gene3D G3DSA:3.40.50.300 1 258 9.2E-58 T 13-10-2018 Trebr_0706 ce1cb12a263622900dcbf215c7efaa38 264 SUPERFAMILY SSF52540 2 235 4.24E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0706 ce1cb12a263622900dcbf215c7efaa38 264 Pfam PF00005 ABC transporter 22 177 5.3E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0706 ce1cb12a263622900dcbf215c7efaa38 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0891 3c500a518861c0d436900fe2fc53c2dc 921 Gene3D G3DSA:1.20.1640.10 722 910 5.2E-10 T 13-10-2018 Trebr_0891 3c500a518861c0d436900fe2fc53c2dc 921 Gene3D G3DSA:1.20.1640.10 193 387 4.8E-13 T 13-10-2018 Trebr_0891 3c500a518861c0d436900fe2fc53c2dc 921 SUPERFAMILY SSF82866 699 903 8.11E-34 T 13-10-2018 Trebr_0891 3c500a518861c0d436900fe2fc53c2dc 921 SUPERFAMILY SSF82866 147 371 3.92E-29 T 13-10-2018 Trebr_0891 3c500a518861c0d436900fe2fc53c2dc 921 Pfam PF03176 MMPL family 707 899 1.3E-14 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Trebr_0891 3c500a518861c0d436900fe2fc53c2dc 921 Pfam PF03176 MMPL family 39 382 4.2E-27 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 Trebr_2263 3e74c5951d08cd43e777f125201e17fe 234 SUPERFAMILY SSF52540 2 232 2.88E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2263 3e74c5951d08cd43e777f125201e17fe 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_2263 3e74c5951d08cd43e777f125201e17fe 234 Pfam PF00005 ABC transporter 17 162 4.0E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2263 3e74c5951d08cd43e777f125201e17fe 234 PIRSF PIRSF039137 1 234 1.0E-109 T 13-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Trebr_2263 3e74c5951d08cd43e777f125201e17fe 234 SMART SM00382 26 217 1.3E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2263 3e74c5951d08cd43e777f125201e17fe 234 Gene3D G3DSA:3.40.50.300 1 234 3.9E-62 T 13-10-2018 Trebr_1230 b25aaf44670874640abcad9999a01256 484 SUPERFAMILY SSF52540 308 472 8.74E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1230 b25aaf44670874640abcad9999a01256 484 Gene3D G3DSA:3.40.50.300 2 235 2.8E-17 T 13-10-2018 Trebr_1230 b25aaf44670874640abcad9999a01256 484 SUPERFAMILY SSF52540 4 233 5.56E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1230 b25aaf44670874640abcad9999a01256 484 Gene3D G3DSA:3.40.50.300 290 480 1.6E-8 T 13-10-2018 Trebr_0963 0ed1db386209628d3ce9872cfe252a2f 111 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 25 111 1.2E-18 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Trebr_0963 0ed1db386209628d3ce9872cfe252a2f 111 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 97 110 2.0E-7 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Trebr_0963 0ed1db386209628d3ce9872cfe252a2f 111 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 76 92 2.0E-7 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Trebr_0963 0ed1db386209628d3ce9872cfe252a2f 111 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 41 57 2.0E-7 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Trebr_0963 0ed1db386209628d3ce9872cfe252a2f 111 Pfam PF02049 Flagellar hook-basal body complex protein FliE 26 109 1.6E-17 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Trebr_0618 b2fcb21a35c4db5aaf7464d2ca731cb4 376 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 16 366 2.3E-122 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Trebr_0618 b2fcb21a35c4db5aaf7464d2ca731cb4 376 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 15 370 1.5E-144 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Trebr_0618 b2fcb21a35c4db5aaf7464d2ca731cb4 376 PIRSF PIRSF015658 2 372 3.9E-146 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 Gene3D G3DSA:3.90.740.10 198 417 5.6E-244 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 SUPERFAMILY SSF52374 6 664 7.27E-140 T 13-10-2018 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 18 650 2.4E-197 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 Gene3D G3DSA:3.40.50.620 15 641 5.6E-244 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 Gene3D G3DSA:1.10.730.10 657 843 1.1E-51 T 13-10-2018 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 41 52 2.3E-31 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 574 583 2.3E-31 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 233 256 2.3E-31 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 411 426 2.3E-31 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 534 547 2.3E-31 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 SUPERFAMILY SSF47323 671 912 2.06E-51 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 3 1052 14.236 T 13-10-2018 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 Pfam PF08264 Anticodon-binding domain of tRNA 704 853 1.2E-28 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 SUPERFAMILY SSF50677 200 413 1.83E-45 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Trebr_1528 1c27bfa0f3dc2a0d9b796ab6c89028f4 1065 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 8 865 2.7E-294 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Trebr_1056 72266bd47205607cac1b7bf20e046a50 429 Gene3D G3DSA:3.90.1150.10 294 429 2.2E-46 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1056 72266bd47205607cac1b7bf20e046a50 429 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 7 425 1.0E-190 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 Trebr_1056 72266bd47205607cac1b7bf20e046a50 429 Gene3D G3DSA:3.40.640.10 3 290 1.5E-104 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1056 72266bd47205607cac1b7bf20e046a50 429 PIRSF PIRSF001434 1 429 3.2E-131 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Trebr_1056 72266bd47205607cac1b7bf20e046a50 429 SUPERFAMILY SSF53383 6 425 1.77E-122 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1056 72266bd47205607cac1b7bf20e046a50 429 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 425 6.8E-142 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Trebr_1056 72266bd47205607cac1b7bf20e046a50 429 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Trebr_2283 41729ce1f10747f9d501ad5bb86dc878 183 SUPERFAMILY SSF55282 7 183 2.0E-72 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2283 41729ce1f10747f9d501ad5bb86dc878 183 Pfam PF00673 ribosomal L5P family C-terminus 89 181 2.4E-38 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2283 41729ce1f10747f9d501ad5bb86dc878 183 Gene3D G3DSA:3.30.1440.10 4 183 1.5E-75 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2283 41729ce1f10747f9d501ad5bb86dc878 183 Pfam PF00281 Ribosomal protein L5 28 84 7.3E-26 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2283 41729ce1f10747f9d501ad5bb86dc878 183 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 5 183 41.656 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2283 41729ce1f10747f9d501ad5bb86dc878 183 ProSitePatterns PS00358 Ribosomal protein L5 signature. 61 77 - T 13-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2283 41729ce1f10747f9d501ad5bb86dc878 183 PIRSF PIRSF002161 2 183 5.2E-63 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 Pfam PF02056 Family 4 glycosyl hydrolase 2 186 1.1E-60 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 Gene3D G3DSA:3.90.1820.20 1 436 4.7E-139 T 13-10-2018 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 75 91 3.6E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 3.6E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 113 133 3.6E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 3.6E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 195 207 3.6E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 142 159 3.6E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 PRINTS PR00732 Glycosyl hydrolase family 4 signature 97 110 3.6E-36 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 SUPERFAMILY SSF56327 171 436 1.51E-68 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 199 411 3.8E-67 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 Trebr_0042 d8d931d6ad42533817f7324fe8cf9e3e 439 SUPERFAMILY SSF51735 1 170 4.96E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0838 160532b36deccaa448c06705e2242a36 256 Gene3D G3DSA:3.40.50.720 2 252 5.0E-48 T 13-10-2018 Trebr_0838 160532b36deccaa448c06705e2242a36 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0838 160532b36deccaa448c06705e2242a36 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0838 160532b36deccaa448c06705e2242a36 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0838 160532b36deccaa448c06705e2242a36 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0838 160532b36deccaa448c06705e2242a36 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.1E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0838 160532b36deccaa448c06705e2242a36 256 Pfam PF00106 short chain dehydrogenase 5 189 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0838 160532b36deccaa448c06705e2242a36 256 SUPERFAMILY SSF51735 2 245 2.96E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0838 160532b36deccaa448c06705e2242a36 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 4.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0838 160532b36deccaa448c06705e2242a36 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 4.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0838 160532b36deccaa448c06705e2242a36 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 4.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_0926 d66e7b6ed7d176b25c10b0aff56b7c45 256 SUPERFAMILY SSF89392 92 190 5.1E-5 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Trebr_0926 d66e7b6ed7d176b25c10b0aff56b7c45 256 Gene3D G3DSA:2.50.20.10 21 256 1.7E-49 T 13-10-2018 Trebr_0926 d66e7b6ed7d176b25c10b0aff56b7c45 256 Pfam PF17131 Outer membrane lipoprotein-sorting protein 72 254 1.7E-40 T 13-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein Trebr_2497 61066705036377973a7a0d1b6d5ae0e8 417 SUPERFAMILY SSF53474 166 251 3.15E-5 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_0542 a4055c4edb7a433e5851f9c9c98626eb 492 Gene3D G3DSA:1.20.1480.50 161 259 2.5E-13 T 13-10-2018 Trebr_0542 a4055c4edb7a433e5851f9c9c98626eb 492 SMART SM00304 200 253 8.9E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0542 a4055c4edb7a433e5851f9c9c98626eb 492 Pfam PF06580 Histidine kinase 279 358 1.8E-23 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Trebr_0542 a4055c4edb7a433e5851f9c9c98626eb 492 Pfam PF00672 HAMP domain 201 249 2.4E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0542 a4055c4edb7a433e5851f9c9c98626eb 492 SUPERFAMILY SSF55874 350 489 4.32E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0542 a4055c4edb7a433e5851f9c9c98626eb 492 Gene3D G3DSA:3.30.565.10 335 491 1.1E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0542 a4055c4edb7a433e5851f9c9c98626eb 492 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 378 489 2.5E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0542 a4055c4edb7a433e5851f9c9c98626eb 492 SUPERFAMILY SSF158472 201 252 1.44E-10 T 13-10-2018 Trebr_0959 db5536ede48dd7db9ce07a10ed97a989 179 Pfam PF00227 Proteasome subunit 8 177 2.0E-24 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 Trebr_0959 db5536ede48dd7db9ce07a10ed97a989 179 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 9 179 1.5E-85 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Trebr_0959 db5536ede48dd7db9ce07a10ed97a989 179 SUPERFAMILY SSF56235 6 178 6.92E-59 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0959 db5536ede48dd7db9ce07a10ed97a989 179 Gene3D G3DSA:3.60.20.10 5 179 5.4E-66 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Trebr_0959 db5536ede48dd7db9ce07a10ed97a989 179 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 8 179 42.016 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Trebr_0959 db5536ede48dd7db9ce07a10ed97a989 179 PIRSF PIRSF039093 2 179 7.6E-90 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Trebr_1800 ff831bdf1b30a35d78718cbc59df742a 129 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 2 128 3.5E-44 T 13-10-2018 IPR027565 Cupin fold metalloprotein, WbuC family Trebr_1800 ff831bdf1b30a35d78718cbc59df742a 129 Gene3D G3DSA:2.60.120.10 10 128 8.0E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_1800 ff831bdf1b30a35d78718cbc59df742a 129 SUPERFAMILY SSF51182 22 122 1.62E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily Trebr_1800 ff831bdf1b30a35d78718cbc59df742a 129 Pfam PF07883 Cupin domain 42 110 7.9E-7 T 13-10-2018 IPR013096 Cupin 2, conserved barrel Trebr_1678 dd4182a26ebeef4a8a59b0acc11b4f5b 305 Gene3D G3DSA:1.10.3720.10 52 304 2.4E-53 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1678 dd4182a26ebeef4a8a59b0acc11b4f5b 305 SUPERFAMILY SSF161098 56 292 2.62E-45 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1678 dd4182a26ebeef4a8a59b0acc11b4f5b 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 291 2.1E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1153 a57df67306eed558a4ebd491da569a89 417 SUPERFAMILY SSF52540 20 277 1.68E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1153 a57df67306eed558a4ebd491da569a89 417 Pfam PF13177 DNA polymerase III, delta subunit 13 262 6.8E-30 T 13-10-2018 Trebr_1303 84b482a2104dd3beff64ef48345e25cf 265 Pfam PF00849 RNA pseudouridylate synthase 12 206 2.4E-19 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1303 84b482a2104dd3beff64ef48345e25cf 265 Gene3D G3DSA:3.30.2350.10 2 254 9.2E-37 T 13-10-2018 Trebr_1303 84b482a2104dd3beff64ef48345e25cf 265 SUPERFAMILY SSF55120 5 256 1.12E-31 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 Gene3D G3DSA:1.10.287.950 307 603 1.7E-68 T 13-10-2018 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 Pfam PF02743 Cache domain 36 268 3.4E-24 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 428 587 2.8E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 382 411 2.7E-25 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 459 486 2.7E-25 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 488 517 2.7E-25 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 Gene3D G3DSA:3.30.450.20 143 289 3.4E-22 T 13-10-2018 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 SUPERFAMILY SSF58104 337 602 1.83E-59 T 13-10-2018 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 SMART SM00283 368 601 9.6E-58 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1178 5246c459bea4fe51b1decb61718d5a8d 673 SUPERFAMILY SSF103190 53 179 5.89E-8 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Trebr_0055 feb3e069237ce6832292eeb806ab0232 317 Pfam PF04198 Putative sugar-binding domain 59 308 7.6E-57 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 Trebr_0055 feb3e069237ce6832292eeb806ab0232 317 Gene3D G3DSA:3.40.50.1360 52 311 5.2E-66 T 13-10-2018 Trebr_0055 feb3e069237ce6832292eeb806ab0232 317 SUPERFAMILY SSF100950 60 309 1.51E-54 T 13-10-2018 IPR037171 NagB/RpiA transferase-like Trebr_0055 feb3e069237ce6832292eeb806ab0232 317 SUPERFAMILY SSF46785 13 51 9.19E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0055 feb3e069237ce6832292eeb806ab0232 317 Gene3D G3DSA:1.10.10.10 1 51 1.1E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0055 feb3e069237ce6832292eeb806ab0232 317 Pfam PF13412 Winged helix-turn-helix DNA-binding 19 48 3.5E-5 T 13-10-2018 Trebr_1611 16c995cf15bf4d9e8847d869db7232ff 131 Pfam PF11680 Protein of unknown function (DUF3276) 5 97 6.5E-15 T 13-10-2018 IPR021694 Protein of unknown function DUF3276 Trebr_1611 16c995cf15bf4d9e8847d869db7232ff 131 SMART SM00712 6 73 2.3E-19 T 13-10-2018 IPR006628 Purine-rich element binding protein family Trebr_1611 16c995cf15bf4d9e8847d869db7232ff 131 Gene3D G3DSA:3.10.450.700 1 78 9.3E-25 T 13-10-2018 Trebr_0094 499169beb1c21e93b3dd8bd359a534a1 177 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 150 5.7E-24 T 13-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Trebr_0903 be7fdeaa2a27834db9e1f20f76c47d51 77 Pfam PF13083 KH domain 3 75 1.4E-23 T 13-10-2018 Trebr_0903 be7fdeaa2a27834db9e1f20f76c47d51 77 SUPERFAMILY SSF54814 5 62 1.24E-6 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Trebr_0903 be7fdeaa2a27834db9e1f20f76c47d51 77 Hamap MF_00088 UPF0109 protein . 2 76 22.426 T 13-10-2018 IPR020627 Uncharacterised protein family UPF0109 Trebr_2033 d4ed14d6a2b7fc9f87890b5613b3ace1 148 Pfam PF02662 Methyl-viologen-reducing hydrogenase, delta subunit 13 135 6.6E-53 T 13-10-2018 IPR003813 F420-non-reducing hydrogenase iron-sulfur subunit D GO:0055114 Trebr_2231 f435e643747f7cc9491c34db90919c7e 238 Pfam PF01522 Polysaccharide deacetylase 7 115 1.9E-11 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Trebr_2231 f435e643747f7cc9491c34db90919c7e 238 SUPERFAMILY SSF88713 6 223 2.3E-19 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Trebr_2231 f435e643747f7cc9491c34db90919c7e 238 Gene3D G3DSA:3.20.20.370 4 229 1.5E-21 T 13-10-2018 Trebr_1900 3f8947e5516cd9c845250514dfd96296 256 Gene3D G3DSA:3.40.50.300 6 240 4.7E-45 T 13-10-2018 Trebr_1900 3f8947e5516cd9c845250514dfd96296 256 SUPERFAMILY SSF52540 13 210 3.83E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1900 3f8947e5516cd9c845250514dfd96296 256 Pfam PF00005 ABC transporter 29 158 1.2E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1900 3f8947e5516cd9c845250514dfd96296 256 SMART SM00382 37 209 8.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1900 3f8947e5516cd9c845250514dfd96296 256 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1747 a8d065e4d36015db7a5cf6af1d9c418d 302 Pfam PF01297 Zinc-uptake complex component A periplasmic 43 297 4.8E-56 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Trebr_1747 a8d065e4d36015db7a5cf6af1d9c418d 302 SUPERFAMILY SSF53807 40 301 4.46E-61 T 13-10-2018 Trebr_1747 a8d065e4d36015db7a5cf6af1d9c418d 302 Gene3D G3DSA:3.40.50.1980 190 300 3.7E-28 T 13-10-2018 Trebr_1747 a8d065e4d36015db7a5cf6af1d9c418d 302 Gene3D G3DSA:3.40.50.1980 32 187 8.7E-32 T 13-10-2018 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 SUPERFAMILY SSF51569 6 299 1.59E-77 T 13-10-2018 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 7 528 1.5E-206 T 13-10-2018 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 SMART SM00917 380 523 4.2E-36 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 Pfam PF00682 HMGL-like 7 258 1.2E-47 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 15 31 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 Gene3D G3DSA:3.30.160.270 362 521 9.4E-7 T 13-10-2018 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 208 221 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 Pfam PF08502 LeuA allosteric (dimerisation) domain 381 522 1.4E-25 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 Gene3D G3DSA:3.20.20.70 7 331 4.2E-101 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0836 d2f9b522728a081ba079ba2469565111 535 SUPERFAMILY SSF110921 421 518 4.97E-20 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Trebr_1995 77f86d3cce1c752dd182d20d12eac7ee 238 Gene3D G3DSA:2.70.50.70 117 221 9.1E-11 T 13-10-2018 Trebr_1995 77f86d3cce1c752dd182d20d12eac7ee 238 Gene3D G3DSA:4.10.520.10 26 116 9.1E-11 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Trebr_1995 77f86d3cce1c752dd182d20d12eac7ee 238 Pfam PF14734 Domain of unknown function (DUF4469) with IG-like fold 138 224 1.1E-8 T 13-10-2018 IPR027824 Domain of unknown function DUF4469 with IG-like fold Trebr_1995 77f86d3cce1c752dd182d20d12eac7ee 238 Pfam PF14848 DNA-binding domain 2 107 3.8E-16 T 13-10-2018 Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 302 308 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 Gene3D G3DSA:1.20.1260.30 1 179 1.7E-51 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 SUPERFAMILY SSF53335 4 522 1.45E-120 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 Pfam PF02384 N-6 DNA Methylase 161 480 1.3E-99 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 Gene3D G3DSA:3.40.50.150 183 474 6.8E-81 T 13-10-2018 Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 213 227 1.4E-18 T 13-10-2018 Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 333 357 1.4E-18 T 13-10-2018 Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 185 201 1.4E-18 T 13-10-2018 Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 299 311 1.4E-18 T 13-10-2018 Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 Pfam PF12161 HsdM N-terminal domain 6 149 8.6E-15 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Trebr_0412 bee7d15638608a50d94e06a92b49ac96 866 TIGRFAM TIGR00497 hsdM: type I restriction-modification system, M subunit 3 484 1.6E-98 T 13-10-2018 IPR004546 Restriction endonuclease, type I, HsdM GO:0003677|GO:0009007|GO:0009307 Trebr_1547 5f5b1f0d707163269899acc0f0f76108 689 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 417 673 5.7E-48 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 Trebr_1547 5f5b1f0d707163269899acc0f0f76108 689 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 14 107 4.2E-17 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 Trebr_2204 b239da6012b9ebf54be1e7e19bcbde8c 348 SUPERFAMILY SSF55729 225 345 3.9E-14 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_2204 b239da6012b9ebf54be1e7e19bcbde8c 348 Gene3D G3DSA:3.40.630.30 102 344 5.7E-16 T 13-10-2018 Trebr_2204 b239da6012b9ebf54be1e7e19bcbde8c 348 Pfam PF08445 FR47-like protein 280 338 8.1E-11 T 13-10-2018 IPR013653 FR47-like GO:0016747 Trebr_2074 6c3d2080baf01854b87f433d78690293 276 Gene3D G3DSA:3.30.70.1070 186 258 5.4E-9 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Trebr_2074 6c3d2080baf01854b87f433d78690293 276 Pfam PF05036 Sporulation related domain 191 255 6.5E-13 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 Trebr_2074 6c3d2080baf01854b87f433d78690293 276 SUPERFAMILY SSF110997 191 254 6.54E-11 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Trebr_0071 e376166909e7d5857492483004052e1b 353 Gene3D G3DSA:3.40.50.2300 28 309 6.0E-95 T 13-10-2018 Trebr_0071 e376166909e7d5857492483004052e1b 353 SUPERFAMILY SSF53822 38 291 1.47E-11 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0071 e376166909e7d5857492483004052e1b 353 Gene3D G3DSA:3.40.50.2300 141 342 6.0E-95 T 13-10-2018 Trebr_0071 e376166909e7d5857492483004052e1b 353 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 27 345 2.6E-66 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Trebr_1189 be62aace9dfd79ce7df8e36e6ec4f7c6 139 SUPERFAMILY SSF81333 75 138 7.45E-9 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Trebr_1189 be62aace9dfd79ce7df8e36e6ec4f7c6 139 Pfam PF00137 ATP synthase subunit C 5 63 9.8E-6 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Trebr_1189 be62aace9dfd79ce7df8e36e6ec4f7c6 139 Pfam PF00137 ATP synthase subunit C 79 137 2.6E-9 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Trebr_1189 be62aace9dfd79ce7df8e36e6ec4f7c6 139 Gene3D G3DSA:1.20.120.610 1 139 5.7E-16 T 13-10-2018 Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 3 263 9.4E-91 T 13-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 Gene3D G3DSA:3.40.50.300 1 270 1.4E-58 T 13-10-2018 Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 ProSitePatterns PS00692 NifH/frxC family signature 2. 139 152 - T 13-10-2018 IPR030655 NifH/chlL conserved site Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 PRINTS PR00091 Nitrogenase component II signature 98 112 4.1E-33 T 13-10-2018 Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 PRINTS PR00091 Nitrogenase component II signature 29 44 4.1E-33 T 13-10-2018 Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 PRINTS PR00091 Nitrogenase component II signature 138 153 4.1E-33 T 13-10-2018 Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 PRINTS PR00091 Nitrogenase component II signature 7 20 4.1E-33 T 13-10-2018 Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 ProSitePatterns PS00746 NifH/frxC family signature 1. 100 112 - T 13-10-2018 IPR030655 NifH/chlL conserved site Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 SUPERFAMILY SSF52540 1 266 5.63E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1222 d7d3ea3e1937322cf8c50b7b51f036c9 297 PIRSF PIRSF000363 1 282 4.3E-98 T 13-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 Trebr_1933 fdbd200371ae5f0dc5429b52bf54fefa 230 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 16 225 3.7E-53 T 13-10-2018 IPR006214 Bax inhibitor 1-related Trebr_1229 ee1b665feec5a4d0dd500fb1b005fa3f 349 SUPERFAMILY SSF55874 189 342 2.1E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1229 ee1b665feec5a4d0dd500fb1b005fa3f 349 Gene3D G3DSA:3.30.565.10 183 345 9.6E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1229 ee1b665feec5a4d0dd500fb1b005fa3f 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 343 1.5E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_1229 ee1b665feec5a4d0dd500fb1b005fa3f 349 Pfam PF06580 Histidine kinase 134 213 4.3E-23 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Trebr_1229 ee1b665feec5a4d0dd500fb1b005fa3f 349 SMART SM00387 230 345 3.4E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 225 240 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 PIRSF PIRSF000097 110 277 4.3E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 PIRSF PIRSF000097 1 115 6.4E-35 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 Gene3D G3DSA:3.20.20.100 1 282 7.3E-114 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 Pfam PF00248 Aldo/keto reductase family 21 256 2.0E-46 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 PRINTS PR00069 Aldo-keto reductase signature 153 182 5.8E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 PRINTS PR00069 Aldo-keto reductase signature 119 136 5.8E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 PRINTS PR00069 Aldo-keto reductase signature 192 216 5.8E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 PRINTS PR00069 Aldo-keto reductase signature 34 58 5.8E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 PRINTS PR00069 Aldo-keto reductase signature 90 108 5.8E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 SUPERFAMILY SSF51430 4 262 1.44E-86 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 119 136 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Trebr_0203 a454344ca0352c46a0fa730ea9067f43 288 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 38 55 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Trebr_1255 74a9edee0c9b95b292a9887af452dd11 382 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 14 376 5.7E-144 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Trebr_1255 74a9edee0c9b95b292a9887af452dd11 382 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 14 376 1.3E-150 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Trebr_1255 74a9edee0c9b95b292a9887af452dd11 382 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 7 374 51.544 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Trebr_1255 74a9edee0c9b95b292a9887af452dd11 382 Gene3D G3DSA:3.20.20.105 2 378 3.8E-154 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Trebr_1255 74a9edee0c9b95b292a9887af452dd11 382 Pfam PF01702 Queuine tRNA-ribosyltransferase 134 371 2.3E-79 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Trebr_1255 74a9edee0c9b95b292a9887af452dd11 382 SUPERFAMILY SSF51713 8 374 2.75E-144 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Trebr_1405 6e94236358d268c0f2f781e195bba34c 445 Pfam PF02386 Cation transport protein 29 425 6.4E-61 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Trebr_1915 b0cc522a4f097189cb2adbc0ff46078d 390 SUPERFAMILY SSF75005 48 372 6.41E-79 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily Trebr_1915 b0cc522a4f097189cb2adbc0ff46078d 390 PIRSF PIRSF016202 20 368 5.8E-92 T 13-10-2018 IPR007184 Mannoside phosphorylase Trebr_1915 b0cc522a4f097189cb2adbc0ff46078d 390 Pfam PF04041 beta-1,4-mannooligosaccharide phosphorylase 71 364 2.6E-26 T 13-10-2018 IPR007184 Mannoside phosphorylase Trebr_1915 b0cc522a4f097189cb2adbc0ff46078d 390 Gene3D G3DSA:2.115.10.20 2 390 2.2E-138 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily Trebr_1915 b0cc522a4f097189cb2adbc0ff46078d 390 Hamap MF_00928 4-O-beta-D-mannosyl-D-glucose phosphorylase. 4 390 70.891 T 13-10-2018 IPR028583 4-O-beta-D-mannosyl-D-glucose phosphorylase MetaCyc: PWY-7456 Trebr_0962 c8ce73641f87afc3e5b9af4f18c71a7f 151 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 99 148 2.2E-14 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Trebr_0962 c8ce73641f87afc3e5b9af4f18c71a7f 151 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Trebr_0962 c8ce73641f87afc3e5b9af4f18c71a7f 151 Pfam PF00460 Flagella basal body rod protein 7 34 1.3E-7 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Trebr_0962 c8ce73641f87afc3e5b9af4f18c71a7f 151 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 151 1.3E-44 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 Trebr_1563 36cab6341f7b95c96a46f4050aaecc9a 652 Gene3D G3DSA:3.50.50.60 395 449 2.3E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1563 36cab6341f7b95c96a46f4050aaecc9a 652 Pfam PF00890 FAD binding domain 7 435 4.1E-19 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Trebr_1563 36cab6341f7b95c96a46f4050aaecc9a 652 SUPERFAMILY SSF51905 1 463 4.13E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1563 36cab6341f7b95c96a46f4050aaecc9a 652 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 8.6E-8 T 13-10-2018 Trebr_1563 36cab6341f7b95c96a46f4050aaecc9a 652 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 402 424 8.6E-8 T 13-10-2018 Trebr_1563 36cab6341f7b95c96a46f4050aaecc9a 652 Gene3D G3DSA:3.90.700.10 364 394 2.3E-14 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Trebr_1563 36cab6341f7b95c96a46f4050aaecc9a 652 Gene3D G3DSA:3.50.50.60 1 270 1.3E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1685 a7f2a9635c40d53b7bc1a90a11de3f9a 466 SUPERFAMILY SSF51445 3 376 1.22E-82 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_1685 a7f2a9635c40d53b7bc1a90a11de3f9a 466 Gene3D G3DSA:3.20.20.80 2 373 1.4E-83 T 13-10-2018 Trebr_1685 a7f2a9635c40d53b7bc1a90a11de3f9a 466 SMART SM00642 39 367 8.4E-53 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_1685 a7f2a9635c40d53b7bc1a90a11de3f9a 466 Pfam PF00128 Alpha amylase, catalytic domain 49 337 3.4E-48 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0684 a30679f9d7a3852e4f523c317132f816 578 Gene3D G3DSA:3.90.400.10 145 235 1.2E-97 T 13-10-2018 Trebr_0684 a30679f9d7a3852e4f523c317132f816 578 Pfam PF00128 Alpha amylase, catalytic domain 62 431 1.6E-65 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0684 a30679f9d7a3852e4f523c317132f816 578 SUPERFAMILY SSF51445 37 478 1.37E-90 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0684 a30679f9d7a3852e4f523c317132f816 578 Gene3D G3DSA:3.20.20.80 39 447 1.2E-97 T 13-10-2018 Trebr_0684 a30679f9d7a3852e4f523c317132f816 578 SMART SM00642 47 472 2.2E-79 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_1277 2d41b210a3965ea9ed227bd73d6b16f6 357 Pfam PF13353 4Fe-4S single cluster domain 92 175 8.8E-10 T 13-10-2018 Trebr_1277 2d41b210a3965ea9ed227bd73d6b16f6 357 PIRSF PIRSF004911 27 341 1.0E-99 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Trebr_1277 2d41b210a3965ea9ed227bd73d6b16f6 357 TIGRFAM TIGR00238 TIGR00238: KamA family protein 48 313 4.8E-60 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Trebr_1277 2d41b210a3965ea9ed227bd73d6b16f6 357 Pfam PF04055 Radical SAM superfamily 97 248 1.9E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_1277 2d41b210a3965ea9ed227bd73d6b16f6 357 Gene3D G3DSA:3.20.20.70 32 319 2.7E-84 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1277 2d41b210a3965ea9ed227bd73d6b16f6 357 SUPERFAMILY SSF102114 85 339 8.5E-27 T 13-10-2018 Trebr_1015 ad2314d80eec3cfc140be71abc1b43dc 62 Pfam PF14205 Cysteine-rich KTR 5 57 5.9E-33 T 13-10-2018 IPR025957 Cysteine-rich KTR Trebr_0716 b97267e80a59d72ebf5f0a955c62eee6 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 23 426 4.9E-126 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Trebr_0716 b97267e80a59d72ebf5f0a955c62eee6 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 420 2.1E-113 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Trebr_0716 b97267e80a59d72ebf5f0a955c62eee6 433 PIRSF PIRSF006066 6 432 2.2E-151 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Trebr_0553 b85f32dbabbad0ab13b0b1961dbc85d5 635 Pfam PF03415 Clostripain family 47 391 9.6E-41 T 13-10-2018 IPR005077 Peptidase C11, clostripain Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 270 279 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 4 410 2.5E-86 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 Gene3D G3DSA:3.90.1150.10 2 86 1.0E-6 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 SUPERFAMILY SSF53383 5 412 1.87E-70 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 Gene3D G3DSA:3.90.1150.10 324 407 9.5E-86 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 1 414 53.356 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 Gene3D G3DSA:3.40.640.10 132 323 9.5E-86 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 Pfam PF00155 Aminotransferase class I and II 23 78 2.1E-4 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_0668 3bc7cb285e7136b8ee91e39ea089ce2d 414 Pfam PF00155 Aminotransferase class I and II 135 410 8.4E-41 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_0127 e154a9a1a8ead05b36bc0bbf68fc816c 478 SUPERFAMILY SSF53067 4 232 1.62E-42 T 13-10-2018 Trebr_0127 e154a9a1a8ead05b36bc0bbf68fc816c 478 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 242 432 2.6E-34 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Trebr_0127 e154a9a1a8ead05b36bc0bbf68fc816c 478 SUPERFAMILY SSF53067 239 471 1.58E-35 T 13-10-2018 Trebr_0127 e154a9a1a8ead05b36bc0bbf68fc816c 478 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 212 1.1E-24 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Trebr_0127 e154a9a1a8ead05b36bc0bbf68fc816c 478 PIRSF PIRSF000538 1 277 6.3E-25 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Trebr_0127 e154a9a1a8ead05b36bc0bbf68fc816c 478 PIRSF PIRSF000538 353 478 2.9E-16 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Trebr_0127 e154a9a1a8ead05b36bc0bbf68fc816c 478 Gene3D G3DSA:3.30.420.40 224 460 8.1E-99 T 13-10-2018 Trebr_0127 e154a9a1a8ead05b36bc0bbf68fc816c 478 Gene3D G3DSA:3.30.420.40 1 223 1.6E-79 T 13-10-2018 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 SMART SM00388 379 446 3.1E-22 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 SMART SM00304 192 244 5.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 Gene3D G3DSA:1.10.287.130 370 449 2.6E-27 T 13-10-2018 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 Pfam PF16736 Single Cache-like 67 150 2.6E-7 T 13-10-2018 IPR031967 PhoR, single Cache-like domain Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 SUPERFAMILY SSF158472 193 242 4.97E-6 T 13-10-2018 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 Gene3D G3DSA:1.20.1480.50 160 249 1.5E-8 T 13-10-2018 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 555 2.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 PRINTS PR00344 Bacterial sensor protein C-terminal signature 602 615 2.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 569 2.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 594 2.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 Gene3D G3DSA:3.30.565.10 450 621 3.0E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 SUPERFAMILY SSF55874 435 616 4.19E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 SUPERFAMILY SSF47384 367 445 2.55E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 Pfam PF00512 His Kinase A (phospho-acceptor) domain 380 445 1.4E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 SMART SM00387 494 618 2.6E-41 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 496 616 1.1E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0167 72d51b25118c2523831ab0c26df255a7 624 Pfam PF00672 HAMP domain 193 240 1.9E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_1899 1175f69c654b34ab2b7a56ab6163e0f2 201 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 1 197 3.4E-80 T 13-10-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 Trebr_1899 1175f69c654b34ab2b7a56ab6163e0f2 201 Pfam PF12710 haloacid dehalogenase-like hydrolase 69 160 9.7E-7 T 13-10-2018 Trebr_1899 1175f69c654b34ab2b7a56ab6163e0f2 201 Gene3D G3DSA:3.90.1470.10 13 128 2.0E-74 T 13-10-2018 Trebr_1899 1175f69c654b34ab2b7a56ab6163e0f2 201 SUPERFAMILY SSF56784 4 195 6.16E-36 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_1899 1175f69c654b34ab2b7a56ab6163e0f2 201 Gene3D G3DSA:3.40.50.1000 3 191 2.0E-74 T 13-10-2018 IPR023214 HAD superfamily Trebr_1067 282de63abc7c763ef2bfd133e70eb948 385 Gene3D G3DSA:2.40.70.10 156 289 1.4E-5 T 13-10-2018 IPR021109 Aspartic peptidase domain superfamily Trebr_1067 282de63abc7c763ef2bfd133e70eb948 385 SUPERFAMILY SSF50156 315 374 3.33E-7 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_1067 282de63abc7c763ef2bfd133e70eb948 385 Gene3D G3DSA:2.30.42.10 300 380 1.5E-6 T 13-10-2018 Trebr_2426 9b1a421d2d5144ebf89d0732450c38ff 210 Gene3D G3DSA:1.10.1760.20 8 197 1.4E-38 T 13-10-2018 Trebr_2426 9b1a421d2d5144ebf89d0732450c38ff 210 Pfam PF12822 ECF transporter, substrate-specific component 12 182 1.4E-10 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 Trebr_1579 6d68a2e67a03b9a84e2b4afaa504383b 371 Pfam PF13439 Glycosyltransferase Family 4 16 171 9.9E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_1579 6d68a2e67a03b9a84e2b4afaa504383b 371 Gene3D G3DSA:3.40.50.2000 186 369 3.6E-38 T 13-10-2018 Trebr_1579 6d68a2e67a03b9a84e2b4afaa504383b 371 Pfam PF00534 Glycosyl transferases group 1 189 345 1.5E-26 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_1579 6d68a2e67a03b9a84e2b4afaa504383b 371 SUPERFAMILY SSF53756 7 366 1.05E-67 T 13-10-2018 Trebr_1579 6d68a2e67a03b9a84e2b4afaa504383b 371 Gene3D G3DSA:3.40.50.2000 1 180 9.0E-13 T 13-10-2018 Trebr_1485 e8d57a0303e4e9b22438fde7d221cd1a 97 Gene3D G3DSA:1.10.1270.10 1 95 1.1E-20 T 13-10-2018 IPR038116 TrpR-like superfamily Trebr_1485 e8d57a0303e4e9b22438fde7d221cd1a 97 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 6 90 6.0E-9 T 13-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 Trebr_1485 e8d57a0303e4e9b22438fde7d221cd1a 97 Pfam PF01371 Trp repressor protein 9 91 2.9E-18 T 13-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 Trebr_1485 e8d57a0303e4e9b22438fde7d221cd1a 97 SUPERFAMILY SSF48295 3 91 4.55E-19 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Trebr_1735 243f6169d8fbec2cf57bc37b655e2659 135 Gene3D G3DSA:3.90.1530.30 11 69 2.2E-11 T 13-10-2018 Trebr_1735 243f6169d8fbec2cf57bc37b655e2659 135 Pfam PF02195 ParB-like nuclease domain 2 84 4.3E-15 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_1735 243f6169d8fbec2cf57bc37b655e2659 135 SUPERFAMILY SSF110849 2 106 5.41E-16 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Trebr_1735 243f6169d8fbec2cf57bc37b655e2659 135 SMART SM00470 1 85 2.5E-15 T 13-10-2018 IPR003115 ParB/Sulfiredoxin Trebr_0994 a852a57c9c69bc608ee678dd60293c8c 239 SMART SM00382 38 229 1.1E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0994 a852a57c9c69bc608ee678dd60293c8c 239 Gene3D G3DSA:3.40.50.300 7 235 2.3E-60 T 13-10-2018 Trebr_0994 a852a57c9c69bc608ee678dd60293c8c 239 SUPERFAMILY SSF52540 10 231 7.32E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0994 a852a57c9c69bc608ee678dd60293c8c 239 Pfam PF00005 ABC transporter 30 177 1.6E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0994 a852a57c9c69bc608ee678dd60293c8c 239 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0489 b4ef3323d156791f1c1c74f30c7f9114 504 ProSitePatterns PS00482 Dihydroorotase signature 1. 103 111 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0489 b4ef3323d156791f1c1c74f30c7f9114 504 SUPERFAMILY SSF51338 81 502 1.21E-16 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Trebr_0489 b4ef3323d156791f1c1c74f30c7f9114 504 ProSitePatterns PS00483 Dihydroorotase signature 2. 381 392 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0489 b4ef3323d156791f1c1c74f30c7f9114 504 Gene3D G3DSA:3.20.20.140 285 503 3.4E-71 T 13-10-2018 Trebr_0489 b4ef3323d156791f1c1c74f30c7f9114 504 Pfam PF01979 Amidohydrolase family 97 497 5.1E-19 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Trebr_0489 b4ef3323d156791f1c1c74f30c7f9114 504 SUPERFAMILY SSF51556 101 440 2.57E-71 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_0489 b4ef3323d156791f1c1c74f30c7f9114 504 Gene3D G3DSA:3.20.20.140 18 284 7.6E-27 T 13-10-2018 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 Pfam PF12833 Helix-turn-helix domain 1032 1110 3.9E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 Pfam PF13377 Periplasmic binding protein-like domain 128 290 3.9E-21 T 13-10-2018 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 SUPERFAMILY SSF53822 6 294 2.78E-29 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 1063 1105 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 SUPERFAMILY SSF46689 1062 1111 1.3E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 SMART SM00342 1029 1109 7.8E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 1093 1109 1.7E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 1078 1093 1.7E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 Gene3D G3DSA:3.40.50.2300 55 270 4.4E-30 T 13-10-2018 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 Gene3D G3DSA:1.10.10.60 1060 1112 4.6E-17 T 13-10-2018 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 Gene3D G3DSA:1.10.10.60 1009 1059 7.9E-10 T 13-10-2018 Trebr_0020 a6bb1c746ade3196ff3fc768ead6bbff 1112 Gene3D G3DSA:3.40.50.2300 116 250 4.4E-30 T 13-10-2018 Trebr_1102 af6c53c5b715ea82fffcdf1ebbd8b065 515 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 13 498 77.354 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Trebr_1102 af6c53c5b715ea82fffcdf1ebbd8b065 515 SUPERFAMILY SSF75304 8 499 2.22E-140 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Trebr_1102 af6c53c5b715ea82fffcdf1ebbd8b065 515 Pfam PF01425 Amidase 55 487 1.5E-139 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Trebr_1102 af6c53c5b715ea82fffcdf1ebbd8b065 515 Gene3D G3DSA:3.90.1300.10 4 499 8.4E-166 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Trebr_1102 af6c53c5b715ea82fffcdf1ebbd8b065 515 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 50 496 1.6E-155 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Trebr_0357 1d9e4930efcfc5b066a05cd5893791bb 282 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0357 1d9e4930efcfc5b066a05cd5893791bb 282 Gene3D G3DSA:3.40.50.300 1 279 6.6E-51 T 13-10-2018 Trebr_0357 1d9e4930efcfc5b066a05cd5893791bb 282 Pfam PF00005 ABC transporter 22 195 5.3E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0357 1d9e4930efcfc5b066a05cd5893791bb 282 SUPERFAMILY SSF52540 1 253 1.33E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0357 1d9e4930efcfc5b066a05cd5893791bb 282 SMART SM00382 31 253 1.4E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1795 550604cf5addd226a26e11e1da88e2ae 374 SUPERFAMILY SSF53335 149 369 1.13E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1795 550604cf5addd226a26e11e1da88e2ae 374 SUPERFAMILY SSF55729 6 148 2.92E-32 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_1795 550604cf5addd226a26e11e1da88e2ae 374 Gene3D G3DSA:3.40.630.30 4 166 3.2E-41 T 13-10-2018 Trebr_1795 550604cf5addd226a26e11e1da88e2ae 374 Pfam PF13489 Methyltransferase domain 171 346 4.2E-9 T 13-10-2018 Trebr_1795 550604cf5addd226a26e11e1da88e2ae 374 Pfam PF00583 Acetyltransferase (GNAT) family 37 137 7.6E-19 T 13-10-2018 IPR000182 GNAT domain Trebr_1795 550604cf5addd226a26e11e1da88e2ae 374 Gene3D G3DSA:3.40.50.150 173 370 7.7E-24 T 13-10-2018 Trebr_0672 63e291ee58407076aeb728be7a31190e 336 Pfam PF03781 Sulfatase-modifying factor enzyme 1 66 331 1.0E-35 T 13-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Trebr_0672 63e291ee58407076aeb728be7a31190e 336 Gene3D G3DSA:3.90.1580.10 45 333 7.4E-60 T 13-10-2018 Trebr_0672 63e291ee58407076aeb728be7a31190e 336 SUPERFAMILY SSF56436 68 333 8.71E-38 T 13-10-2018 IPR016187 C-type lectin fold Trebr_0592 a3f6d19675ed70f2f04c2440222edce4 436 Pfam PF00691 OmpA family 332 427 5.1E-18 T 13-10-2018 IPR006665 OmpA-like domain Trebr_0592 a3f6d19675ed70f2f04c2440222edce4 436 Gene3D G3DSA:3.30.1330.60 277 436 4.5E-33 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_0592 a3f6d19675ed70f2f04c2440222edce4 436 SUPERFAMILY SSF103088 324 433 1.07E-26 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_1671 7696752dada8f866d54d8f8d1f1e0576 509 SUPERFAMILY SSF53383 140 507 3.63E-69 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1671 7696752dada8f866d54d8f8d1f1e0576 509 SUPERFAMILY SSF46785 10 86 5.9E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1671 7696752dada8f866d54d8f8d1f1e0576 509 Gene3D G3DSA:1.10.10.10 2 90 2.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1671 7696752dada8f866d54d8f8d1f1e0576 509 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 76 2.9E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_1671 7696752dada8f866d54d8f8d1f1e0576 509 SMART SM00345 18 77 1.8E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Trebr_1671 7696752dada8f866d54d8f8d1f1e0576 509 Pfam PF00155 Aminotransferase class I and II 156 444 1.6E-12 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_1671 7696752dada8f866d54d8f8d1f1e0576 509 Gene3D G3DSA:3.40.640.10 134 502 3.7E-110 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 SUPERFAMILY SSF49303 209 279 9.21E-7 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 Gene3D G3DSA:2.60.40.10 205 317 2.3E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 SUPERFAMILY SSF51445 317 665 3.29E-110 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 Gene3D G3DSA:3.20.20.80 318 663 1.3E-125 T 13-10-2018 Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 Gene3D G3DSA:2.60.40.10 771 859 5.1E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 SUPERFAMILY SSF49303 666 774 6.71E-6 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 Gene3D G3DSA:2.60.120.260 1 198 7.1E-49 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 SUPERFAMILY SSF49303 776 858 1.65E-11 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Trebr_2016 130c5697b551f68ffff633622f7c96a6 859 SUPERFAMILY SSF49785 4 199 2.41E-44 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_2429 80f1663348bea050a5b8cfe8d78e5aab 315 Pfam PF06161 Protein of unknown function (DUF975) 6 250 1.9E-25 T 13-10-2018 IPR010380 Protein of unknown function DUF975 Trebr_1908 757802b15a44f4926e8d64e930a54877 95 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 85 8.0E-10 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1908 757802b15a44f4926e8d64e930a54877 95 Gene3D G3DSA:1.20.58.110 2 94 5.5E-22 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1908 757802b15a44f4926e8d64e930a54877 95 TIGRFAM TIGR00029 S20: ribosomal protein bS20 5 83 1.4E-18 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1908 757802b15a44f4926e8d64e930a54877 95 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 86 14.196 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1908 757802b15a44f4926e8d64e930a54877 95 Pfam PF01649 Ribosomal protein S20 6 85 2.9E-21 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1908 757802b15a44f4926e8d64e930a54877 95 SUPERFAMILY SSF46992 6 86 3.53E-24 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_0967 d7b08c4836cf3791af1760eff2f927e5 452 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 4 434 2.8E-189 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_0967 d7b08c4836cf3791af1760eff2f927e5 452 SMART SM00382 158 339 3.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0967 d7b08c4836cf3791af1760eff2f927e5 452 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 24 89 4.2E-8 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_0967 d7b08c4836cf3791af1760eff2f927e5 452 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 346 355 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_0967 d7b08c4836cf3791af1760eff2f927e5 452 Gene3D G3DSA:3.40.50.12240 13 437 7.1E-154 T 13-10-2018 Trebr_0967 d7b08c4836cf3791af1760eff2f927e5 452 SUPERFAMILY SSF52540 93 359 1.18E-97 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0967 d7b08c4836cf3791af1760eff2f927e5 452 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 146 355 1.7E-77 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_2398 878e47d50eae1e4039c38e5b6e4c1b9b 213 Pfam PF10029 Predicted periplasmic protein (DUF2271) 24 115 3.2E-9 T 13-10-2018 IPR014469 Protein of unknown function DUF2271 Trebr_0571 d8c32b1a88be2e7edf14b4e93da189a4 517 Pfam PF00005 ABC transporter 19 174 2.1E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0571 d8c32b1a88be2e7edf14b4e93da189a4 517 Gene3D G3DSA:3.40.50.300 2 238 1.3E-49 T 13-10-2018 Trebr_0571 d8c32b1a88be2e7edf14b4e93da189a4 517 Pfam PF00005 ABC transporter 313 460 5.5E-8 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0571 d8c32b1a88be2e7edf14b4e93da189a4 517 SUPERFAMILY SSF52540 4 227 7.88E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0571 d8c32b1a88be2e7edf14b4e93da189a4 517 SUPERFAMILY SSF52540 287 512 3.2E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0571 d8c32b1a88be2e7edf14b4e93da189a4 517 SMART SM00382 28 222 7.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0571 d8c32b1a88be2e7edf14b4e93da189a4 517 ProSitePatterns PS00211 ABC transporters family signature. 433 447 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0571 d8c32b1a88be2e7edf14b4e93da189a4 517 Gene3D G3DSA:3.40.50.300 303 516 7.1E-30 T 13-10-2018 Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 SUPERFAMILY SSF52402 331 653 8.38E-69 T 13-10-2018 Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 TIGRFAM TIGR00552 nadE: NAD+ synthetase 356 522 2.6E-23 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 Gene3D G3DSA:3.40.50.620 329 545 5.4E-63 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 Pfam PF02540 NAD synthase 354 575 1.5E-28 T 13-10-2018 IPR022310 NAD/GMP synthase Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 Gene3D G3DSA:1.10.10.1140 560 679 1.5E-46 T 13-10-2018 Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 6 671 27.543 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 SUPERFAMILY SSF56317 4 296 1.09E-50 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 PIRSF PIRSF006630 3 673 3.2E-148 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 Pfam PF00795 Carbon-nitrogen hydrolase 8 284 2.2E-15 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Trebr_0850 1be32e655cd0ae012962a11bc4a2a489 679 Gene3D G3DSA:3.60.110.10 1 323 1.3E-78 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Trebr_1000 c051cb29ee32632f887fff60c22b101a 347 Gene3D G3DSA:2.40.50.100 92 163 3.2E-74 T 13-10-2018 Trebr_1000 c051cb29ee32632f887fff60c22b101a 347 Gene3D G3DSA:2.40.420.20 65 317 3.2E-74 T 13-10-2018 Trebr_1000 c051cb29ee32632f887fff60c22b101a 347 Gene3D G3DSA:2.40.30.170 74 249 3.2E-74 T 13-10-2018 Trebr_1000 c051cb29ee32632f887fff60c22b101a 347 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 127 238 2.9E-23 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Trebr_1000 c051cb29ee32632f887fff60c22b101a 347 SUPERFAMILY SSF111369 81 242 5.1E-13 T 13-10-2018 Trebr_1000 c051cb29ee32632f887fff60c22b101a 347 Pfam PF13533 Biotin-lipoyl like 91 125 3.6E-5 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Trebr_1000 c051cb29ee32632f887fff60c22b101a 347 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 134 317 3.2E-42 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Trebr_0613 aef8d84d19e8a5d4f6673b6b4d456c92 140 Gene3D G3DSA:3.40.1420.30 19 137 7.8E-33 T 13-10-2018 Trebr_0613 aef8d84d19e8a5d4f6673b6b4d456c92 140 SUPERFAMILY SSF160574 21 137 3.27E-31 T 13-10-2018 Trebr_0613 aef8d84d19e8a5d4f6673b6b4d456c92 140 Pfam PF11396 Putative beta-lactamase-inhibitor-like, PepSY-like 55 134 7.6E-18 T 13-10-2018 IPR021533 Putative beta-lactamase-inhibitor-like, PepSY-like Trebr_1300 7588f9926d83eb906346e208c892259f 233 Pfam PF01168 Alanine racemase, N-terminal domain 22 230 2.1E-25 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Trebr_1300 7588f9926d83eb906346e208c892259f 233 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 229 25.193 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Trebr_1300 7588f9926d83eb906346e208c892259f 233 Gene3D G3DSA:3.20.20.10 1 232 2.8E-76 T 13-10-2018 IPR029066 PLP-binding barrel Trebr_1300 7588f9926d83eb906346e208c892259f 233 PIRSF PIRSF004848 1 233 7.7E-68 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Trebr_1300 7588f9926d83eb906346e208c892259f 233 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 1.8E-51 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Trebr_1300 7588f9926d83eb906346e208c892259f 233 SUPERFAMILY SSF51419 1 228 1.22E-61 T 13-10-2018 IPR029066 PLP-binding barrel Trebr_0701 6dc0344dcc94fde437515af8f91e2f34 444 SUPERFAMILY SSF48452 298 396 9.11E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0701 6dc0344dcc94fde437515af8f91e2f34 444 Pfam PF06889 Protein of unknown function (DUF1266) 84 227 1.2E-19 T 13-10-2018 IPR009677 Protein of unknown function DUF1266 Trebr_0580 25c0d03c0eb63650d431df74b588a84f 221 Gene3D G3DSA:2.60.40.10 129 220 3.6E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0580 25c0d03c0eb63650d431df74b588a84f 221 SUPERFAMILY SSF81296 139 219 1.66E-9 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_0580 25c0d03c0eb63650d431df74b588a84f 221 SUPERFAMILY SSF81296 34 124 6.2E-5 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_0580 25c0d03c0eb63650d431df74b588a84f 221 Gene3D G3DSA:2.60.40.10 30 127 6.4E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0159 de36643e6f0bed59edb796be0bf741e8 121 Gene3D G3DSA:3.10.180.10 7 121 8.7E-10 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Trebr_0159 de36643e6f0bed59edb796be0bf741e8 121 SUPERFAMILY SSF54593 14 120 3.19E-8 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 Gene3D G3DSA:1.10.10.10 6 68 1.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 Pfam PF01316 Arginine repressor, DNA binding domain 4 70 7.2E-18 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 Pfam PF02863 Arginine repressor, C-terminal domain 85 149 9.6E-21 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 PRINTS PR01467 Bacterial arginine repressor signature 90 103 9.7E-17 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 PRINTS PR01467 Bacterial arginine repressor signature 38 53 9.7E-17 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 PRINTS PR01467 Bacterial arginine repressor signature 22 35 9.7E-17 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 PRINTS PR01467 Bacterial arginine repressor signature 120 135 9.7E-17 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 SUPERFAMILY SSF46785 4 70 4.63E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 Gene3D G3DSA:3.30.1360.40 70 149 9.7E-18 T 13-10-2018 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 SUPERFAMILY SSF55252 86 138 2.09E-13 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 Hamap MF_00173 Arginine repressor [argR]. 1 155 44.478 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 Trebr_1814 39c80e9bbf92c40e04b4b6a4f65806d4 157 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 148 1.0E-6 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 Trebr_0970 5c5b120dd12a145f9759f5a17e025560 407 Pfam PF13439 Glycosyltransferase Family 4 10 189 3.3E-26 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_0970 5c5b120dd12a145f9759f5a17e025560 407 SUPERFAMILY SSF53756 3 401 4.83E-69 T 13-10-2018 Trebr_0970 5c5b120dd12a145f9759f5a17e025560 407 Gene3D G3DSA:3.40.50.2000 1 207 5.8E-33 T 13-10-2018 Trebr_0970 5c5b120dd12a145f9759f5a17e025560 407 Pfam PF00534 Glycosyl transferases group 1 205 370 2.3E-28 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_0970 5c5b120dd12a145f9759f5a17e025560 407 Gene3D G3DSA:3.40.50.2000 208 374 1.2E-32 T 13-10-2018 Trebr_1388 7d144ef51b244a2f99322aa8ea299ea5 426 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 19 333 1.7E-102 T 13-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Trebr_1388 7d144ef51b244a2f99322aa8ea299ea5 426 SUPERFAMILY SSF81891 163 330 4.71E-20 T 13-10-2018 Trebr_1388 7d144ef51b244a2f99322aa8ea299ea5 426 Gene3D G3DSA:1.10.3090.10 163 363 8.4E-23 T 13-10-2018 Trebr_1388 7d144ef51b244a2f99322aa8ea299ea5 426 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 200 253 2.2E-8 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Trebr_1388 7d144ef51b244a2f99322aa8ea299ea5 426 Pfam PF01743 Poly A polymerase head domain 50 165 4.9E-33 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Trebr_1388 7d144ef51b244a2f99322aa8ea299ea5 426 SUPERFAMILY SSF81301 23 161 2.29E-35 T 13-10-2018 Trebr_1388 7d144ef51b244a2f99322aa8ea299ea5 426 Gene3D G3DSA:3.30.460.10 16 162 5.6E-50 T 13-10-2018 Trebr_2213 5e0f9f26346a1626ca35f5177986e2b2 104 SUPERFAMILY SSF46785 4 90 1.61E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2213 5e0f9f26346a1626ca35f5177986e2b2 104 Gene3D G3DSA:1.10.10.10 2 90 1.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2213 5e0f9f26346a1626ca35f5177986e2b2 104 Pfam PF01022 Bacterial regulatory protein, arsR family 17 62 9.7E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2213 5e0f9f26346a1626ca35f5177986e2b2 104 SMART SM00418 10 91 4.7E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2213 5e0f9f26346a1626ca35f5177986e2b2 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 12 27 3.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2213 5e0f9f26346a1626ca35f5177986e2b2 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 3.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2213 5e0f9f26346a1626ca35f5177986e2b2 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 31 42 3.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2213 5e0f9f26346a1626ca35f5177986e2b2 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 3.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_0540 21f47f47cd3bd65d418dae22a8a2b4f6 357 SUPERFAMILY SSF53822 47 340 1.85E-62 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0540 21f47f47cd3bd65d418dae22a8a2b4f6 357 Gene3D G3DSA:3.40.50.2300 51 327 3.5E-88 T 13-10-2018 Trebr_0540 21f47f47cd3bd65d418dae22a8a2b4f6 357 Gene3D G3DSA:3.40.50.2300 152 347 3.5E-88 T 13-10-2018 Trebr_0540 21f47f47cd3bd65d418dae22a8a2b4f6 357 Pfam PF13407 Periplasmic binding protein domain 51 302 6.0E-53 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 PRINTS PR01806 Virulence factor MviN signature 58 74 1.3E-52 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 PRINTS PR01806 Virulence factor MviN signature 39 58 1.3E-52 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 PRINTS PR01806 Virulence factor MviN signature 420 437 1.3E-52 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 PRINTS PR01806 Virulence factor MviN signature 141 165 1.3E-52 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 PRINTS PR01806 Virulence factor MviN signature 270 296 1.3E-52 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 PRINTS PR01806 Virulence factor MviN signature 165 186 1.3E-52 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 PRINTS PR01806 Virulence factor MviN signature 368 387 1.3E-52 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 8 523 1.6E-120 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 9 481 16.708 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 Pfam PF03023 MviN-like protein 35 476 4.8E-108 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1959 77777e26bd930d3c78487e9bf993f02f 539 PIRSF PIRSF002869 4 529 9.2E-140 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Trebr_1990 16c0126f719f77077ec477cc58cb562b 240 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 Trebr_1990 16c0126f719f77077ec477cc58cb562b 240 SUPERFAMILY SSF53167 3 237 5.11E-68 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Trebr_1990 16c0126f719f77077ec477cc58cb562b 240 Gene3D G3DSA:3.40.50.1580 1 238 3.8E-58 T 13-10-2018 Trebr_1990 16c0126f719f77077ec477cc58cb562b 240 Pfam PF01048 Phosphorylase superfamily 17 216 1.0E-31 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Trebr_1390 4baf56fa0d6a4e6653fa91be9a8d41d0 184 Gene3D G3DSA:3.40.50.150 1 183 7.2E-48 T 13-10-2018 Trebr_1390 4baf56fa0d6a4e6653fa91be9a8d41d0 184 SUPERFAMILY SSF53335 1 178 5.02E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1390 4baf56fa0d6a4e6653fa91be9a8d41d0 184 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 114 120 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_1390 4baf56fa0d6a4e6653fa91be9a8d41d0 184 PIRSF PIRSF004553 1 180 6.9E-52 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Trebr_1390 4baf56fa0d6a4e6653fa91be9a8d41d0 184 Pfam PF03602 Conserved hypothetical protein 95 1 178 7.0E-42 T 13-10-2018 Trebr_1390 4baf56fa0d6a4e6653fa91be9a8d41d0 184 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 178 2.8E-38 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Trebr_0602 f5d1011dc232c2badba9378922940895 597 SMART SM00642 13 418 4.3E-113 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0602 f5d1011dc232c2badba9378922940895 597 Gene3D G3DSA:3.90.400.10 105 174 1.9E-170 T 13-10-2018 Trebr_0602 f5d1011dc232c2badba9378922940895 597 Pfam PF00128 Alpha amylase, catalytic domain 28 374 9.2E-97 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Trebr_0602 f5d1011dc232c2badba9378922940895 597 SUPERFAMILY SSF51445 3 472 3.9E-138 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0602 f5d1011dc232c2badba9378922940895 597 Gene3D G3DSA:3.20.20.80 5 470 1.9E-170 T 13-10-2018 Trebr_1657 f7ba7f81f6eb8bfbd13f5e44f86d13dd 411 Pfam PF12838 4Fe-4S dicluster domain 11 57 3.6E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_1657 f7ba7f81f6eb8bfbd13f5e44f86d13dd 411 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 45 56 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_1657 f7ba7f81f6eb8bfbd13f5e44f86d13dd 411 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 162 324 1.1E-29 T 13-10-2018 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal Trebr_1657 f7ba7f81f6eb8bfbd13f5e44f86d13dd 411 Gene3D G3DSA:3.30.70.20 6 59 5.6E-11 T 13-10-2018 Trebr_1657 f7ba7f81f6eb8bfbd13f5e44f86d13dd 411 SUPERFAMILY SSF54862 9 59 1.84E-11 T 13-10-2018 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 Gene3D G3DSA:3.30.1360.80 1 159 5.6E-50 T 13-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 155 30.788 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 3 148 8.4E-58 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 27 132 3.0E-43 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 SUPERFAMILY SSF63411 3 158 7.14E-46 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 75 93 6.4E-15 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 48 66 6.4E-15 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 6.4E-15 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_2366 35d36c3f3091713311b6e8c213bbbb91 159 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 117 136 6.4E-15 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Trebr_1868 727a2c12215fa685edd3b1bada18f9dd 115 SUPERFAMILY SSF47413 9 75 5.9E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1868 727a2c12215fa685edd3b1bada18f9dd 115 SMART SM00530 16 71 2.4E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1868 727a2c12215fa685edd3b1bada18f9dd 115 Gene3D G3DSA:1.10.260.40 5 73 1.6E-19 T 13-10-2018 Trebr_1868 727a2c12215fa685edd3b1bada18f9dd 115 Pfam PF01381 Helix-turn-helix 17 71 1.8E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1441 e60b0b0d48922c7c1f981f14be91c5a0 233 SUPERFAMILY SSF82649 55 101 3.66E-8 T 13-10-2018 Trebr_1441 e60b0b0d48922c7c1f981f14be91c5a0 233 Gene3D G3DSA:3.90.1010.10 33 117 1.1E-6 T 13-10-2018 Trebr_0787 38d5d0f15ba5f6c79fa55ff61aeee78b 486 PIRSF PIRSF000484 3 486 3.5E-155 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Trebr_0787 38d5d0f15ba5f6c79fa55ff61aeee78b 486 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 12 472 6.9E-184 T 13-10-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 Trebr_0787 38d5d0f15ba5f6c79fa55ff61aeee78b 486 Gene3D G3DSA:3.20.140.10 13 477 1.4E-177 T 13-10-2018 Trebr_0787 38d5d0f15ba5f6c79fa55ff61aeee78b 486 SUPERFAMILY SSF51690 141 482 3.97E-108 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Trebr_0787 38d5d0f15ba5f6c79fa55ff61aeee78b 486 SUPERFAMILY SSF54675 8 140 2.16E-46 T 13-10-2018 Trebr_0787 38d5d0f15ba5f6c79fa55ff61aeee78b 486 Gene3D G3DSA:3.20.20.70 153 321 1.4E-177 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0787 38d5d0f15ba5f6c79fa55ff61aeee78b 486 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 157 324 6.4E-6 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Trebr_1435 f4b55a19c4d93f688c1b7cc0ed84f6bb 285 SUPERFAMILY SSF55166 124 258 1.05E-28 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Trebr_1435 f4b55a19c4d93f688c1b7cc0ed84f6bb 285 Gene3D G3DSA:3.30.1380.10 81 271 6.3E-52 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Trebr_1435 f4b55a19c4d93f688c1b7cc0ed84f6bb 285 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 131 252 1.3E-33 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 Trebr_0406 50dffb35e046b1d39fd302466285b638 135 SUPERFAMILY SSF52540 2 81 1.76E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0406 50dffb35e046b1d39fd302466285b638 135 Gene3D G3DSA:3.40.50.300 1 126 2.6E-5 T 13-10-2018 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 Gene3D G3DSA:3.40.50.1260 2 196 2.5E-67 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 216 235 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 397 414 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 162 184 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 374 385 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 130 145 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 9 25 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 193 215 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 30 52 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PRINTS PR00477 Phosphoglycerate kinase family signature 338 363 6.4E-91 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 PIRSF PIRSF000724 1 422 1.1E-145 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 Pfam PF00162 Phosphoglycerate kinase 5 411 4.3E-150 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 4 421 40.688 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 Gene3D G3DSA:3.40.50.1260 207 421 2.0E-81 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0834 1a6b7598fa271c2f0e7651ee15a2ac1d 422 SUPERFAMILY SSF53748 2 421 1.41E-151 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Trebr_0376 0a4413e583c06ff3d0d0c79926168637 251 Pfam PF13614 AAA domain 2 176 7.2E-64 T 13-10-2018 IPR025669 AAA domain Trebr_0376 0a4413e583c06ff3d0d0c79926168637 251 Gene3D G3DSA:3.40.50.300 1 250 3.2E-82 T 13-10-2018 Trebr_0376 0a4413e583c06ff3d0d0c79926168637 251 PIRSF PIRSF009320 2 101 2.0E-15 T 13-10-2018 Trebr_0376 0a4413e583c06ff3d0d0c79926168637 251 PIRSF PIRSF009320 93 251 3.5E-8 T 13-10-2018 Trebr_0376 0a4413e583c06ff3d0d0c79926168637 251 SUPERFAMILY SSF52540 1 249 3.22E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2109 47d3cf24608c96776cdc8569a8ba1120 346 SUPERFAMILY SSF53335 179 297 2.87E-17 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_2109 47d3cf24608c96776cdc8569a8ba1120 346 Pfam PF01728 FtsJ-like methyltransferase 180 271 8.2E-8 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Trebr_2109 47d3cf24608c96776cdc8569a8ba1120 346 Gene3D G3DSA:3.40.50.150 172 336 6.7E-45 T 13-10-2018 Trebr_2551 0f51b9e16e7845a92cff7bada2d2443b 361 Gene3D G3DSA:2.160.20.10 49 312 8.9E-33 T 13-10-2018 IPR012334 Pectin lyase fold Trebr_2551 0f51b9e16e7845a92cff7bada2d2443b 361 Pfam PF01095 Pectinesterase 53 242 4.1E-11 T 13-10-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 Trebr_2551 0f51b9e16e7845a92cff7bada2d2443b 361 SUPERFAMILY SSF51126 52 291 5.65E-21 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor Trebr_2146 e3373a621705010b851d60d39248ed6a 205 Pfam PF00293 NUDIX domain 43 127 9.1E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Trebr_2146 e3373a621705010b851d60d39248ed6a 205 Gene3D G3DSA:3.90.79.10 36 164 5.3E-23 T 13-10-2018 Trebr_2146 e3373a621705010b851d60d39248ed6a 205 PRINTS PR00502 NUDIX hydrolase family signature 70 84 4.3E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Trebr_2146 e3373a621705010b851d60d39248ed6a 205 PRINTS PR00502 NUDIX hydrolase family signature 84 99 4.3E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Trebr_2146 e3373a621705010b851d60d39248ed6a 205 SUPERFAMILY SSF55811 5 185 3.66E-29 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Trebr_1434 eaad9280e8bca3cbaf58ab70cf437af1 320 SUPERFAMILY SSF160240 221 299 9.68E-19 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Trebr_1434 eaad9280e8bca3cbaf58ab70cf437af1 320 Pfam PF01545 Cation efflux family 18 215 2.2E-35 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Trebr_1434 eaad9280e8bca3cbaf58ab70cf437af1 320 Gene3D G3DSA:3.30.70.1350 217 300 1.2E-27 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Trebr_1434 eaad9280e8bca3cbaf58ab70cf437af1 320 SUPERFAMILY SSF161111 11 217 4.18E-44 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Trebr_1434 eaad9280e8bca3cbaf58ab70cf437af1 320 Gene3D G3DSA:1.20.1510.10 13 216 8.3E-45 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Trebr_1434 eaad9280e8bca3cbaf58ab70cf437af1 320 Pfam PF16916 Dimerisation domain of Zinc Transporter 222 298 1.8E-22 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain Trebr_1434 eaad9280e8bca3cbaf58ab70cf437af1 320 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 18 299 1.4E-59 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Trebr_2485 06931f9649e7c5490d1eeb0b0c5a903f 303 SUPERFAMILY SSF161098 18 303 1.31E-54 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2485 06931f9649e7c5490d1eeb0b0c5a903f 303 Gene3D G3DSA:1.10.3720.10 11 294 1.3E-70 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2485 06931f9649e7c5490d1eeb0b0c5a903f 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 296 4.3E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1775 95c36a870edbc80560df3ea7cca4947c 399 Gene3D G3DSA:1.10.260.150 63 305 3.3E-16 T 13-10-2018 Trebr_1775 95c36a870edbc80560df3ea7cca4947c 399 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 301 393 1.2E-13 T 13-10-2018 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain Trebr_2469 5a903bb620eeaf4bad4b0da2b7e1a340 308 Gene3D G3DSA:3.90.550.10 2 202 9.7E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2469 5a903bb620eeaf4bad4b0da2b7e1a340 308 SUPERFAMILY SSF53448 2 196 1.69E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2469 5a903bb620eeaf4bad4b0da2b7e1a340 308 Pfam PF00535 Glycosyl transferase family 2 4 138 1.8E-28 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_1539 8ca777c01cb75859a90331faf6b81136 424 SUPERFAMILY SSF55920 143 402 5.76E-25 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like Trebr_1539 8ca777c01cb75859a90331faf6b81136 424 Pfam PF00557 Metallopeptidase family M24 155 384 2.7E-20 T 13-10-2018 IPR000994 Peptidase M24 Trebr_1539 8ca777c01cb75859a90331faf6b81136 424 Gene3D G3DSA:3.90.230.10 146 400 3.3E-30 T 13-10-2018 Trebr_0110 8c8fdb4b10eb0d2273cb7a2e03e8be84 328 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 3 153 3.9E-17 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Trebr_0110 8c8fdb4b10eb0d2273cb7a2e03e8be84 328 SUPERFAMILY SSF52540 1 298 2.58E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1216 3b9688cfefbd38a0e072136e6781116e 72 SUPERFAMILY SSF50037 5 72 1.15E-20 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal Trebr_1216 3b9688cfefbd38a0e072136e6781116e 72 SMART SM00899 1 72 1.9E-19 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Trebr_1216 3b9688cfefbd38a0e072136e6781116e 72 Gene3D G3DSA:2.30.30.90 1 72 5.5E-24 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain Trebr_1216 3b9688cfefbd38a0e072136e6781116e 72 Pfam PF04023 FeoA domain 1 71 1.3E-15 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 108 124 1.6E-12 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 1.6E-12 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 1.6E-12 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 1.6E-12 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 Pfam PF00701 Dihydrodipicolinate synthetase family 7 292 4.6E-61 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 PIRSF PIRSF001365 4 306 3.7E-75 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 SUPERFAMILY SSF51569 6 292 1.05E-73 T 13-10-2018 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 SMART SM01130 6 301 4.4E-70 T 13-10-2018 IPR002220 DapA-like GO:0016829 Trebr_1444 8a0593a7c026913cae7f9fdbf6ef8cd2 307 Gene3D G3DSA:3.20.20.70 6 300 3.4E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1283 329dc2cd800474057214cdd137f82dde 385 SUPERFAMILY SSF103473 3 383 2.88E-36 T 13-10-2018 IPR036259 MFS transporter superfamily Trebr_1283 329dc2cd800474057214cdd137f82dde 385 Pfam PF12832 MFS_1 like family 3 363 1.8E-32 T 13-10-2018 IPR024989 Major facilitator superfamily associated domain Trebr_1283 329dc2cd800474057214cdd137f82dde 385 Gene3D G3DSA:1.20.1250.20 196 384 1.4E-30 T 13-10-2018 Trebr_1283 329dc2cd800474057214cdd137f82dde 385 Gene3D G3DSA:1.20.1250.20 1 179 3.7E-14 T 13-10-2018 Trebr_2324 b2a267e357e34989c813d807cf5610df 286 SUPERFAMILY SSF52343 89 249 2.1E-35 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Trebr_2324 b2a267e357e34989c813d807cf5610df 286 Pfam PF00175 Oxidoreductase NAD-binding domain 105 197 5.8E-6 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Trebr_2324 b2a267e357e34989c813d807cf5610df 286 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 213 250 1.0E-12 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Trebr_2324 b2a267e357e34989c813d807cf5610df 286 SUPERFAMILY SSF63380 1 93 1.13E-15 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Trebr_2324 b2a267e357e34989c813d807cf5610df 286 Gene3D G3DSA:3.40.50.80 100 204 3.0E-37 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Trebr_2324 b2a267e357e34989c813d807cf5610df 286 Gene3D G3DSA:2.40.30.10 1 92 1.5E-20 T 13-10-2018 Trebr_2324 b2a267e357e34989c813d807cf5610df 286 PIRSF PIRSF006816 1 256 6.5E-65 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Trebr_0036 283cdebbb6d0ead77036d58c9cd5044e 493 Gene3D G3DSA:3.90.1150.170 42 483 3.0E-127 T 13-10-2018 Trebr_0036 283cdebbb6d0ead77036d58c9cd5044e 493 Gene3D G3DSA:3.40.640.10 113 365 3.0E-127 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_0036 283cdebbb6d0ead77036d58c9cd5044e 493 SUPERFAMILY SSF53383 14 487 2.89E-122 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0036 283cdebbb6d0ead77036d58c9cd5044e 493 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 305 326 - T 13-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 Trebr_0036 283cdebbb6d0ead77036d58c9cd5044e 493 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 76 420 9.9E-67 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 Trebr_1993 0393eba070de3c910a6b1db50c20677a 418 SUPERFAMILY SSF56112 71 384 1.62E-34 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily Trebr_1993 0393eba070de3c910a6b1db50c20677a 418 Gene3D G3DSA:1.10.510.10 157 370 1.1E-31 T 13-10-2018 Trebr_1993 0393eba070de3c910a6b1db50c20677a 418 Pfam PF00069 Protein kinase domain 68 370 7.3E-29 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Trebr_1993 0393eba070de3c910a6b1db50c20677a 418 Gene3D G3DSA:3.30.200.20 77 156 1.1E-31 T 13-10-2018 Trebr_1993 0393eba070de3c910a6b1db50c20677a 418 SMART SM00220 61 383 1.5E-10 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Trebr_1107 4905b532c7bae11b3fdf015812d55337 688 Gene3D G3DSA:3.30.70.270 222 393 8.0E-15 T 13-10-2018 Trebr_1107 4905b532c7bae11b3fdf015812d55337 688 SMART SM00052 391 637 3.2E-61 T 13-10-2018 IPR001633 EAL domain Trebr_1107 4905b532c7bae11b3fdf015812d55337 688 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 360 1.6E-6 T 13-10-2018 IPR000160 GGDEF domain Trebr_1107 4905b532c7bae11b3fdf015812d55337 688 SUPERFAMILY SSF141868 399 645 5.89E-71 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_1107 4905b532c7bae11b3fdf015812d55337 688 Pfam PF00563 EAL domain 398 631 4.5E-63 T 13-10-2018 IPR001633 EAL domain Trebr_1107 4905b532c7bae11b3fdf015812d55337 688 SUPERFAMILY SSF55073 226 362 4.39E-11 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1107 4905b532c7bae11b3fdf015812d55337 688 Gene3D G3DSA:3.20.20.450 394 650 5.5E-76 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_0819 f34c5d12365737f6707a6e7e886ad074 366 Pfam PF14307 Glycosyltransferase WbsX 7 355 1.2E-128 T 13-10-2018 IPR032719 Glycosyltransferase WbsX Trebr_0819 f34c5d12365737f6707a6e7e886ad074 366 Gene3D G3DSA:3.20.20.80 3 365 8.9E-10 T 13-10-2018 Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 21 290 53.02 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 Gene3D G3DSA:1.20.120.140 19 287 1.9E-83 T 13-10-2018 Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 SMART SM00382 87 266 6.6E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 SMART SM00962 88 290 4.5E-90 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 20 288 2.8E-89 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 SUPERFAMILY SSF47364 5 79 2.36E-9 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 Pfam PF02881 SRP54-type protein, helical bundle domain 6 69 2.1E-5 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 SUPERFAMILY SSF52540 86 290 2.57E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 Pfam PF00448 SRP54-type protein, GTPase domain 89 289 9.5E-67 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Trebr_0991 adfd46fe8936ad78e201221e074b7a0b 292 Gene3D G3DSA:3.40.50.300 88 278 1.9E-83 T 13-10-2018 Trebr_0745 d46ab4b99bb1b55065c605d833ffead6 253 SUPERFAMILY SSF53448 2 239 1.22E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0745 d46ab4b99bb1b55065c605d833ffead6 253 Gene3D G3DSA:3.90.550.20 1 210 4.1E-27 T 13-10-2018 Trebr_0745 d46ab4b99bb1b55065c605d833ffead6 253 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 17 92 3.8E-13 T 13-10-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif Trebr_0230 ac2e9f56b2ca31656baf93f6b34973fd 183 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 92 4.6E-10 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Trebr_0230 ac2e9f56b2ca31656baf93f6b34973fd 183 SUPERFAMILY SSF54534 3 140 1.83E-33 T 13-10-2018 Trebr_0230 ac2e9f56b2ca31656baf93f6b34973fd 183 Gene3D G3DSA:2.40.10.330 71 121 6.0E-58 T 13-10-2018 Trebr_0230 ac2e9f56b2ca31656baf93f6b34973fd 183 Gene3D G3DSA:3.10.50.40 3 151 6.0E-58 T 13-10-2018 Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 Gene3D G3DSA:3.40.50.300 260 500 8.2E-40 T 13-10-2018 Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 SUPERFAMILY SSF52540 246 482 1.22E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 SUPERFAMILY SSF52540 5 229 1.7E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 Pfam PF00005 ABC transporter 271 425 2.9E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 Gene3D G3DSA:3.40.50.300 3 238 4.8E-58 T 13-10-2018 Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 Pfam PF00005 ABC transporter 21 171 1.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 SMART SM00382 30 219 1.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1231 0c7ca84afc61f59e5ab5b1a77e286a3b 501 SMART SM00382 279 474 6.5E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0340 a9e5b0928b6ff39c1f848c549dfff483 382 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 317 1.5E-16 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 223 259 1.4E-13 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 SUPERFAMILY SSF52343 105 259 5.89E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 SUPERFAMILY SSF63380 10 110 4.66E-13 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 Gene3D G3DSA:3.40.50.80 113 222 5.6E-14 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 Gene3D G3DSA:2.40.30.10 9 108 1.0E-14 T 13-10-2018 Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 281 585 37.418 T 13-10-2018 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 Gene3D G3DSA:3.20.20.70 276 586 4.2E-86 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 523 543 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 SUPERFAMILY SSF51395 273 585 1.43E-76 T 13-10-2018 Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 281 585 4.7E-96 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 Gene3D G3DSA:2.10.240.10 223 260 5.7E-11 T 13-10-2018 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily Trebr_0350 9aeef0c810532540ace98884f0ac8882 588 Pfam PF01180 Dihydroorotate dehydrogenase 281 570 9.1E-60 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Trebr_2524 74102d2354c5ee4db44cdb16192f425f 398 Gene3D G3DSA:3.40.50.1820 140 396 3.6E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2524 74102d2354c5ee4db44cdb16192f425f 398 Pfam PF12146 Serine aminopeptidase, S33 157 248 3.5E-10 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 Trebr_2524 74102d2354c5ee4db44cdb16192f425f 398 SUPERFAMILY SSF53474 136 390 6.34E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_0016 5b847c1c23377d840126ea4bc9e46892 475 SUPERFAMILY SSF103088 364 473 3.01E-28 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_0016 5b847c1c23377d840126ea4bc9e46892 475 Pfam PF00691 OmpA family 373 467 4.9E-17 T 13-10-2018 IPR006665 OmpA-like domain Trebr_0016 5b847c1c23377d840126ea4bc9e46892 475 Gene3D G3DSA:3.30.1330.60 348 475 2.1E-32 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 Gene3D G3DSA:3.30.420.40 448 591 5.3E-82 T 13-10-2018 Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 353 607 6.6E-38 T 13-10-2018 IPR008275 CoA enzyme activase Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 Gene3D G3DSA:3.30.420.40 21 277 2.6E-67 T 13-10-2018 Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 SUPERFAMILY SSF53067 353 608 9.55E-50 T 13-10-2018 Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 Gene3D G3DSA:3.30.420.40 354 608 5.3E-82 T 13-10-2018 Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 SUPERFAMILY SSF53067 20 276 7.48E-51 T 13-10-2018 Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 Gene3D G3DSA:3.30.420.40 119 263 2.6E-67 T 13-10-2018 Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 986 1304 8.8E-51 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 751 971 4.5E-78 T 13-10-2018 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 21 240 1.3E-19 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Trebr_1955 3267609c30bfa095ce3fae327ae74cfa 1493 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 354 608 1.7E-38 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Trebr_2125 247cc548e11197ffc5b7f352379c28a7 188 PRINTS PR00502 NUDIX hydrolase family signature 88 103 4.0E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Trebr_2125 247cc548e11197ffc5b7f352379c28a7 188 PRINTS PR00502 NUDIX hydrolase family signature 74 88 4.0E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Trebr_2125 247cc548e11197ffc5b7f352379c28a7 188 SUPERFAMILY SSF55811 7 179 1.11E-41 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Trebr_2125 247cc548e11197ffc5b7f352379c28a7 188 Pfam PF00293 NUDIX domain 48 159 8.2E-18 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Trebr_2125 247cc548e11197ffc5b7f352379c28a7 188 Gene3D G3DSA:3.90.79.10 2 184 4.9E-46 T 13-10-2018 Trebr_2125 247cc548e11197ffc5b7f352379c28a7 188 ProSitePatterns PS00893 Nudix box signature. 79 100 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Trebr_1969 4daef6f6fb0738edca5e20bce45436cb 123 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 8 97 3.0E-30 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Trebr_1969 4daef6f6fb0738edca5e20bce45436cb 123 ProSitePatterns PS01319 Ribosome-binding factor A signature. 76 97 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 Trebr_1969 4daef6f6fb0738edca5e20bce45436cb 123 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 4 110 23.353 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Trebr_1969 4daef6f6fb0738edca5e20bce45436cb 123 Gene3D G3DSA:3.30.300.20 2 105 2.7E-30 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta Trebr_1969 4daef6f6fb0738edca5e20bce45436cb 123 Pfam PF02033 Ribosome-binding factor A 6 107 1.4E-27 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Trebr_1969 4daef6f6fb0738edca5e20bce45436cb 123 SUPERFAMILY SSF89919 1 104 1.44E-27 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily Trebr_1969 4daef6f6fb0738edca5e20bce45436cb 123 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 5 113 5.2E-30 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Trebr_0409 519d34c29c927ad0640103cb77a79cee 407 Gene3D G3DSA:3.90.220.20 176 388 2.4E-54 T 13-10-2018 Trebr_0409 519d34c29c927ad0640103cb77a79cee 407 SUPERFAMILY SSF116734 204 407 5.72E-31 T 13-10-2018 Trebr_0409 519d34c29c927ad0640103cb77a79cee 407 Gene3D G3DSA:3.90.220.20 16 406 2.4E-54 T 13-10-2018 Trebr_0409 519d34c29c927ad0640103cb77a79cee 407 Pfam PF01420 Type I restriction modification DNA specificity domain 16 185 2.2E-4 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Trebr_0409 519d34c29c927ad0640103cb77a79cee 407 Pfam PF01420 Type I restriction modification DNA specificity domain 213 395 4.4E-10 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Trebr_0409 519d34c29c927ad0640103cb77a79cee 407 SUPERFAMILY SSF116734 6 197 4.74E-27 T 13-10-2018 Trebr_2437 9576988343dc1bd3ebf5396c7e0e7157 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.4E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_2437 9576988343dc1bd3ebf5396c7e0e7157 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.4E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_2437 9576988343dc1bd3ebf5396c7e0e7157 198 SUPERFAMILY SSF48498 83 196 3.69E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Trebr_2437 9576988343dc1bd3ebf5396c7e0e7157 198 Gene3D G3DSA:1.10.10.60 5 56 7.0E-15 T 13-10-2018 Trebr_2437 9576988343dc1bd3ebf5396c7e0e7157 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 58 1.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_2437 9576988343dc1bd3ebf5396c7e0e7157 198 SUPERFAMILY SSF46689 6 70 8.98E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_2437 9576988343dc1bd3ebf5396c7e0e7157 198 Pfam PF08359 YsiA-like protein, C-terminal region 83 171 1.2E-4 T 13-10-2018 IPR013570 Transcription regulator YsiA, C-terminal Trebr_2437 9576988343dc1bd3ebf5396c7e0e7157 198 Gene3D G3DSA:1.10.357.10 57 198 2.2E-13 T 13-10-2018 Trebr_2411 4f250dee6d1e59dd12bfa5eb1127b94a 471 SUPERFAMILY SSF53720 6 460 6.15E-120 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Trebr_2411 4f250dee6d1e59dd12bfa5eb1127b94a 471 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 211 218 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Trebr_2411 4f250dee6d1e59dd12bfa5eb1127b94a 471 Pfam PF00171 Aldehyde dehydrogenase family 11 443 2.6E-85 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Trebr_2411 4f250dee6d1e59dd12bfa5eb1127b94a 471 Gene3D G3DSA:3.40.309.10 215 423 3.2E-166 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Trebr_2411 4f250dee6d1e59dd12bfa5eb1127b94a 471 Gene3D G3DSA:3.40.605.10 14 443 3.2E-166 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Trebr_2411 4f250dee6d1e59dd12bfa5eb1127b94a 471 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 239 250 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Trebr_2411 4f250dee6d1e59dd12bfa5eb1127b94a 471 PIRSF PIRSF036492 1 471 1.4E-176 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 Trebr_0261 36f61bce28de8457106204b7d00d0b21 192 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 188 24.225 T 13-10-2018 IPR022929 Putative manganese efflux pump MntP Trebr_0261 36f61bce28de8457106204b7d00d0b21 192 Pfam PF02659 Putative manganese efflux pump 31 185 1.9E-49 T 13-10-2018 IPR003810 Putative manganese efflux pump Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 SUPERFAMILY SSF52738 178 365 3.27E-71 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 SUPERFAMILY SSF52172 9 115 1.85E-25 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 SMART SM00448 10 125 6.5E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 Pfam PF01339 CheB methylesterase 183 360 1.4E-61 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 Gene3D G3DSA:3.40.50.180 173 369 1.3E-76 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 Pfam PF00072 Response regulator receiver domain 12 116 2.6E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 Gene3D G3DSA:3.40.50.2300 8 138 9.1E-28 T 13-10-2018 Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 10 366 38.808 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Trebr_0103 6dbf99130676c4531dd229ece5d7dbd6 369 PIRSF PIRSF000876 7 369 1.6E-131 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Trebr_0769 fd518f64c5e39334ee0ecb6a0720f254 235 Gene3D G3DSA:3.40.50.620 4 234 5.6E-34 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_0769 fd518f64c5e39334ee0ecb6a0720f254 235 SUPERFAMILY SSF52402 4 210 3.26E-37 T 13-10-2018 Trebr_0769 fd518f64c5e39334ee0ecb6a0720f254 235 Pfam PF01171 PP-loop family 26 181 2.9E-12 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Trebr_0769 fd518f64c5e39334ee0ecb6a0720f254 235 PIRSF PIRSF004976 4 235 2.9E-43 T 13-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 Trebr_2522 dab1c55ebb456c36c1824dbc90426a3b 494 Pfam PF07556 Protein of unknown function (DUF1538) 17 222 1.2E-59 T 13-10-2018 IPR011435 Protein of unknown function DUF1538 Trebr_2522 dab1c55ebb456c36c1824dbc90426a3b 494 Pfam PF07556 Protein of unknown function (DUF1538) 266 481 2.8E-62 T 13-10-2018 IPR011435 Protein of unknown function DUF1538 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 Gene3D G3DSA:3.40.190.10 30 309 8.2E-110 T 13-10-2018 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 SUPERFAMILY SSF53850 26 303 3.21E-66 T 13-10-2018 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PIRSF PIRSF019574 1 345 4.9E-93 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 Pfam PF13416 Bacterial extracellular solute-binding protein 42 303 7.6E-26 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 Gene3D G3DSA:3.40.190.10 133 338 8.2E-110 T 13-10-2018 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 166 185 6.9E-44 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 6.9E-44 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 250 269 6.9E-44 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 6.9E-44 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 6.9E-44 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 204 223 6.9E-44 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 6.9E-44 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_0595 eac39dd643b784ddfc34a0061a35ed03 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 6.9E-44 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Trebr_2340 9d99ee04df67b0d79d1969b30f2aa70f 257 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 254 2.0E-80 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 Trebr_2340 9d99ee04df67b0d79d1969b30f2aa70f 257 SUPERFAMILY SSF51556 1 255 1.67E-73 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_2340 9d99ee04df67b0d79d1969b30f2aa70f 257 Gene3D G3DSA:3.20.20.140 1 255 5.2E-75 T 13-10-2018 Trebr_2340 9d99ee04df67b0d79d1969b30f2aa70f 257 Pfam PF01026 TatD related DNase 4 253 7.1E-64 T 13-10-2018 IPR001130 TatD family GO:0016788 Trebr_2340 9d99ee04df67b0d79d1969b30f2aa70f 257 PIRSF PIRSF005902 1 257 1.5E-66 T 13-10-2018 IPR001130 TatD family GO:0016788 Trebr_1872 8852d2f8ac3792e9076a353ec8f569f4 328 Gene3D G3DSA:3.90.550.10 1 268 1.6E-49 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1872 8852d2f8ac3792e9076a353ec8f569f4 328 SUPERFAMILY SSF53448 9 223 3.7E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1872 8852d2f8ac3792e9076a353ec8f569f4 328 Pfam PF00535 Glycosyl transferase family 2 11 138 3.5E-33 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 Pfam PF13432 Tetratricopeptide repeat 76 114 0.012 T 13-10-2018 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 Pfam PF13432 Tetratricopeptide repeat 140 183 1.8E-4 T 13-10-2018 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 SUPERFAMILY SSF48452 71 220 1.0E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 Gene3D G3DSA:1.25.40.10 168 240 1.0E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 Gene3D G3DSA:1.25.40.10 122 167 1.9E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 Gene3D G3DSA:1.25.40.10 24 121 1.8E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 Pfam PF13174 Tetratricopeptide repeat 191 218 0.16 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 SMART SM00028 155 189 20.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 SMART SM00028 70 103 4.5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 SMART SM00028 121 154 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0955 636d13f010735ee14fb32e8d086339f6 243 SMART SM00028 190 223 59.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_2218 f2eae820058661f560d0acb74593c440 273 Pfam PF01464 Transglycosylase SLT domain 123 223 1.0E-17 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 Trebr_2218 f2eae820058661f560d0acb74593c440 273 SUPERFAMILY SSF53955 101 239 1.15E-25 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily Trebr_2218 f2eae820058661f560d0acb74593c440 273 Gene3D G3DSA:1.10.530.10 119 255 1.3E-19 T 13-10-2018 Trebr_1641 67fbd5ae699b1f267964e815abe7b51f 474 Pfam PF14296 O-antigen polysaccharide polymerase Wzy 20 459 1.0E-35 T 13-10-2018 IPR029468 O-antigen polysaccharide polymerase Wzy Trebr_1282 ccf09d325784e91b0ffa7dd0568f14b9 163 Pfam PF13710 ACT domain 14 74 3.8E-15 T 13-10-2018 Trebr_1282 ccf09d325784e91b0ffa7dd0568f14b9 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 3 75 5.0E-25 T 13-10-2018 Trebr_1282 ccf09d325784e91b0ffa7dd0568f14b9 163 Gene3D G3DSA:3.30.70.260 1 78 3.3E-35 T 13-10-2018 Trebr_1282 ccf09d325784e91b0ffa7dd0568f14b9 163 SUPERFAMILY SSF55021 3 75 1.44E-21 T 13-10-2018 Trebr_1282 ccf09d325784e91b0ffa7dd0568f14b9 163 SUPERFAMILY SSF55021 80 160 4.58E-25 T 13-10-2018 Trebr_1282 ccf09d325784e91b0ffa7dd0568f14b9 163 Pfam PF10369 Small subunit of acetolactate synthase 85 158 1.2E-27 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Trebr_1282 ccf09d325784e91b0ffa7dd0568f14b9 163 Gene3D G3DSA:3.30.70.1150 84 163 5.0E-28 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Trebr_1282 ccf09d325784e91b0ffa7dd0568f14b9 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 3 159 6.5E-61 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Trebr_0975 7c5ecb88e84e7666440286fc83177809 345 Pfam PF00953 Glycosyl transferase family 4 76 220 5.1E-38 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Trebr_0781 73a9e34c9808f3fff01dcd9d3f8d7eee 253 Gene3D G3DSA:3.20.20.100 1 232 7.2E-46 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Trebr_0781 73a9e34c9808f3fff01dcd9d3f8d7eee 253 SUPERFAMILY SSF51430 1 227 2.36E-44 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Trebr_0781 73a9e34c9808f3fff01dcd9d3f8d7eee 253 Pfam PF00248 Aldo/keto reductase family 19 197 3.3E-28 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain Trebr_1098 7a377a469b89dcf33582f576a0d2369f 279 Pfam PF00950 ABC 3 transport family 20 273 1.6E-52 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Trebr_1098 7a377a469b89dcf33582f576a0d2369f 279 SUPERFAMILY SSF81345 17 272 1.19E-26 T 13-10-2018 IPR037294 ABC transporter, BtuC-like Trebr_1914 284c7f0df64293c78cc601d6ab389947 337 Gene3D G3DSA:1.25.40.920 67 335 6.2E-92 T 13-10-2018 IPR038537 TatT superfamily Trebr_1914 284c7f0df64293c78cc601d6ab389947 337 Pfam PF16811 TRAP transporter T-component 72 333 1.0E-101 T 13-10-2018 IPR031823 TRAP transporter T-component Trebr_2510 70b1a343cac25665ce36e4c7ecdf1bd9 2008 SUPERFAMILY SSF48239 1497 1763 3.14E-12 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Trebr_2510 70b1a343cac25665ce36e4c7ecdf1bd9 2008 SMART SM01359 990 1145 1.4E-33 T 13-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Trebr_2510 70b1a343cac25665ce36e4c7ecdf1bd9 2008 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 490 587 1.3E-10 T 13-10-2018 Trebr_2510 70b1a343cac25665ce36e4c7ecdf1bd9 2008 SMART SM01360 1206 1295 1.6E-20 T 13-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Trebr_2510 70b1a343cac25665ce36e4c7ecdf1bd9 2008 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 990 1145 8.7E-20 T 13-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Trebr_2510 70b1a343cac25665ce36e4c7ecdf1bd9 2008 Pfam PF00207 Alpha-2-macroglobulin family 1206 1295 9.1E-14 T 13-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Trebr_2510 70b1a343cac25665ce36e4c7ecdf1bd9 2008 Gene3D G3DSA:1.50.10.20 1489 1611 1.6E-10 T 13-10-2018 Trebr_2510 70b1a343cac25665ce36e4c7ecdf1bd9 2008 Pfam PF01835 MG2 domain 612 704 1.3E-10 T 13-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 Trebr_0290 498ec1be752048d5ea47ba043380ccbc 278 Pfam PF00535 Glycosyl transferase family 2 41 157 1.1E-5 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0290 498ec1be752048d5ea47ba043380ccbc 278 SUPERFAMILY SSF53448 30 236 4.39E-11 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1716 a60eca36270e41d4386034ecc026a88a 319 Gene3D G3DSA:3.90.1280.10 265 319 2.8E-12 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Trebr_1716 a60eca36270e41d4386034ecc026a88a 319 PIRSF PIRSF005261 5 319 1.1E-64 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Trebr_1716 a60eca36270e41d4386034ecc026a88a 319 SUPERFAMILY SSF118352 264 316 1.1E-11 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Trebr_1716 a60eca36270e41d4386034ecc026a88a 319 Pfam PF01430 Hsp33 protein 21 311 2.1E-71 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Trebr_1716 a60eca36270e41d4386034ecc026a88a 319 SUPERFAMILY SSF64397 21 270 2.49E-45 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Trebr_1716 a60eca36270e41d4386034ecc026a88a 319 Gene3D G3DSA:3.55.30.10 12 264 9.9E-51 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Trebr_0896 238c3f22ad648aac2123f5a27f4b6e38 346 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 161 324 1.5E-34 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Trebr_0896 238c3f22ad648aac2123f5a27f4b6e38 346 Gene3D G3DSA:3.60.140.10 112 330 3.5E-43 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily Trebr_0896 238c3f22ad648aac2123f5a27f4b6e38 346 SUPERFAMILY SSF64438 161 322 3.36E-37 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Trebr_2308 f7602d9e9d1e0ae3f5daf5b943025fdf 57 Pfam PF00471 Ribosomal protein L33 9 55 2.2E-22 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2308 f7602d9e9d1e0ae3f5daf5b943025fdf 57 SUPERFAMILY SSF57829 5 55 1.05E-18 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Trebr_2308 f7602d9e9d1e0ae3f5daf5b943025fdf 57 Gene3D G3DSA:2.20.28.120 3 55 3.0E-21 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2308 f7602d9e9d1e0ae3f5daf5b943025fdf 57 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 3 55 17.757 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2308 f7602d9e9d1e0ae3f5daf5b943025fdf 57 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 57 8.9E-25 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2308 f7602d9e9d1e0ae3f5daf5b943025fdf 57 ProSitePatterns PS00582 Ribosomal protein L33 signature. 23 42 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1369 4412959a7c7d8fe10570ed1ffa27df7c 144 Gene3D G3DSA:3.30.1330.40 19 142 1.6E-32 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Trebr_1369 4412959a7c7d8fe10570ed1ffa27df7c 144 Pfam PF07736 Chorismate mutase type I 21 137 2.4E-32 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Trebr_1369 4412959a7c7d8fe10570ed1ffa27df7c 144 TIGRFAM TIGR01796 CM_mono_aroH: chorismate mutase 22 137 3.4E-24 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Trebr_1369 4412959a7c7d8fe10570ed1ffa27df7c 144 SUPERFAMILY SSF55298 20 139 6.28E-29 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Trebr_1369 4412959a7c7d8fe10570ed1ffa27df7c 144 ProDom PD031888 MUTASE CHORISMATE AROH THE CLASS ISOMERASE TRANSCRIPTION BIOSYNTHESIS CM 3D-STRUCTURE 30 137 1.0E-16 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Trebr_1361 9cbaad375319fe166c5867947385f912 284 Pfam PF02591 C4-type zinc ribbon domain 200 232 2.4E-14 T 13-10-2018 IPR003743 C4-type zinc ribbon domain Trebr_0241 7584230444eec364cef0e98133102977 477 Gene3D G3DSA:3.20.20.80 1 476 2.2E-156 T 13-10-2018 Trebr_0241 7584230444eec364cef0e98133102977 477 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 371 379 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site Trebr_0241 7584230444eec364cef0e98133102977 477 SUPERFAMILY SSF51445 5 474 1.81E-160 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0241 7584230444eec364cef0e98133102977 477 Pfam PF00232 Glycosyl hydrolase family 1 5 474 2.0E-137 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 Trebr_0241 7584230444eec364cef0e98133102977 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 392 403 4.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 Trebr_0241 7584230444eec364cef0e98133102977 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 414 431 4.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 Trebr_0241 7584230444eec364cef0e98133102977 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 371 379 4.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 Trebr_0241 7584230444eec364cef0e98133102977 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 305 319 4.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 Trebr_0241 7584230444eec364cef0e98133102977 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 439 451 4.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 Trebr_0241 7584230444eec364cef0e98133102977 477 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site Trebr_0518 419f1d8ef02b5711b68ba1add844cdc2 135 PIRSF PIRSF003230 1 131 3.4E-28 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Trebr_0518 419f1d8ef02b5711b68ba1add844cdc2 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 113 6.4E-21 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Trebr_0518 419f1d8ef02b5711b68ba1add844cdc2 135 Gene3D G3DSA:3.10.129.10 2 131 7.9E-35 T 13-10-2018 Trebr_0518 419f1d8ef02b5711b68ba1add844cdc2 135 SUPERFAMILY SSF54637 1 124 3.23E-34 T 13-10-2018 IPR029069 HotDog domain superfamily Trebr_0518 419f1d8ef02b5711b68ba1add844cdc2 135 Pfam PF13279 Thioesterase-like superfamily 9 125 4.4E-15 T 13-10-2018 Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 Pfam PF04060 Putative Fe-S cluster 412 443 3.8E-12 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 Gene3D G3DSA:3.40.950.20 116 343 1.4E-13 T 13-10-2018 Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 47 58 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 Pfam PF13187 4Fe-4S dicluster domain 18 61 2.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 Gene3D G3DSA:3.20.20.20 401 455 2.0E-9 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 SUPERFAMILY SSF53920 46 332 9.02E-34 T 13-10-2018 IPR009016 Iron hydrogenase Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 Gene3D G3DSA:3.30.70.20 7 69 4.9E-14 T 13-10-2018 Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 91 316 3.9E-24 T 13-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal Trebr_0777 59bd50ef36d185e6709f9f6f79420230 463 SUPERFAMILY SSF54862 15 64 2.21E-16 T 13-10-2018 Trebr_1923 4fe23e56b0099383ee934befe66ae645 206 Gene3D G3DSA:2.60.120.260 38 206 1.0E-13 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 SUPERFAMILY SSF58104 72 331 3.4E-46 T 13-10-2018 Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 Pfam PF13682 Chemoreceptor zinc-binding domain 384 448 1.1E-9 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 Gene3D G3DSA:1.20.120.30 378 484 3.9E-6 T 13-10-2018 Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 SMART SM00283 85 347 8.5E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 146 305 1.1E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 205 234 7.0E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 176 203 7.0E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 253 282 7.0E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 99 128 7.0E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_0862 24416043444cbcc4ebf1164c59c575f6 485 Gene3D G3DSA:1.10.287.950 47 346 1.7E-47 T 13-10-2018 Trebr_0173 5b21d3c9d7715d46ae6b4b939068e4d9 300 SUPERFAMILY SSF161098 23 286 1.31E-38 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0173 5b21d3c9d7715d46ae6b4b939068e4d9 300 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 20 291 8.2E-59 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Trebr_0173 5b21d3c9d7715d46ae6b4b939068e4d9 300 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 19 290 1.8E-84 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 Trebr_0173 5b21d3c9d7715d46ae6b4b939068e4d9 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 287 1.1E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0173 5b21d3c9d7715d46ae6b4b939068e4d9 300 Gene3D G3DSA:1.10.3720.10 72 294 1.7E-36 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2477 57c91a51683e20a42137e54ebc4a09c6 290 Pfam PF01497 Periplasmic binding protein 37 263 1.0E-34 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain Trebr_2477 57c91a51683e20a42137e54ebc4a09c6 290 Gene3D G3DSA:3.40.50.1980 159 286 6.1E-37 T 13-10-2018 Trebr_2477 57c91a51683e20a42137e54ebc4a09c6 290 Gene3D G3DSA:3.40.50.1980 31 153 1.3E-31 T 13-10-2018 Trebr_2477 57c91a51683e20a42137e54ebc4a09c6 290 SUPERFAMILY SSF53807 34 284 2.83E-65 T 13-10-2018 Trebr_0666 4cf52ce4e6502f40b941f9d644a4a61a 235 Pfam PF00005 ABC transporter 22 157 4.5E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0666 4cf52ce4e6502f40b941f9d644a4a61a 235 SUPERFAMILY SSF52540 5 219 1.25E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0666 4cf52ce4e6502f40b941f9d644a4a61a 235 Gene3D G3DSA:3.40.50.300 1 234 3.3E-48 T 13-10-2018 Trebr_0666 4cf52ce4e6502f40b941f9d644a4a61a 235 SMART SM00382 31 206 1.6E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1260 4c3e96e4a21fb289686d4c1881683014 582 SUPERFAMILY SSF52540 2 529 1.15E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1260 4c3e96e4a21fb289686d4c1881683014 582 SMART SM00382 21 527 0.0086 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1260 4c3e96e4a21fb289686d4c1881683014 582 PIRSF PIRSF003128 1 573 8.8E-160 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Trebr_1260 4c3e96e4a21fb289686d4c1881683014 582 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 570 1.5E-173 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Trebr_1260 4c3e96e4a21fb289686d4c1881683014 582 Gene3D G3DSA:3.40.50.300 1 241 4.1E-43 T 13-10-2018 Trebr_1260 4c3e96e4a21fb289686d4c1881683014 582 Gene3D G3DSA:3.40.50.300 280 571 1.8E-53 T 13-10-2018 Trebr_1260 4c3e96e4a21fb289686d4c1881683014 582 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 528 1.2E-18 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Trebr_1500 8e8158bb05646c4263ef472e53845234 345 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 21 336 9.0E-116 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 Trebr_1500 8e8158bb05646c4263ef472e53845234 345 PIRSF PIRSF001555 8 345 2.1E-142 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 Trebr_1500 8e8158bb05646c4263ef472e53845234 345 Gene3D G3DSA:3.30.930.10 14 340 2.8E-137 T 13-10-2018 Trebr_1500 8e8158bb05646c4263ef472e53845234 345 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 12 341 46.904 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 Trebr_1500 8e8158bb05646c4263ef472e53845234 345 SUPERFAMILY SSF55681 17 337 8.59E-89 T 13-10-2018 Trebr_1500 8e8158bb05646c4263ef472e53845234 345 Pfam PF03590 Aspartate-ammonia ligase 21 255 4.3E-99 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 Trebr_1489 f9d6a76eda72cb7409925873cda22584 590 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 387 550 8.6E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1489 f9d6a76eda72cb7409925873cda22584 590 SMART SM00283 325 579 2.3E-13 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1489 f9d6a76eda72cb7409925873cda22584 590 Gene3D G3DSA:1.10.287.950 256 588 1.1E-39 T 13-10-2018 Trebr_1489 f9d6a76eda72cb7409925873cda22584 590 SUPERFAMILY SSF58104 287 582 1.4E-41 T 13-10-2018 Trebr_2128 401bd5de556aa625902030c1d216b21b 74 Gene3D G3DSA:2.30.31.70 1 73 7.6E-30 T 13-10-2018 Trebr_2128 401bd5de556aa625902030c1d216b21b 74 Pfam PF02229 Transcriptional Coactivator p15 (PC4) 22 67 2.3E-9 T 13-10-2018 IPR003173 Transcriptional coactivator p15 (PC4) GO:0003677|GO:0006355 Trebr_2128 401bd5de556aa625902030c1d216b21b 74 PIRSF PIRSF037246 1 74 2.3E-34 T 13-10-2018 IPR017154 Uncharacterised conserved protein UCP037246 Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 PRINTS PR00103 cAMP-dependent protein kinase signature 214 228 1.6E-5 T 13-10-2018 Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 PRINTS PR00103 cAMP-dependent protein kinase signature 229 243 1.6E-5 T 13-10-2018 Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 PRINTS PR00103 cAMP-dependent protein kinase signature 258 267 1.6E-5 T 13-10-2018 Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 PRINTS PR00103 cAMP-dependent protein kinase signature 270 281 1.6E-5 T 13-10-2018 Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 Gene3D G3DSA:2.60.120.10 194 325 3.2E-31 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 Gene3D G3DSA:2.60.120.10 5 112 8.2E-20 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 Pfam PF00027 Cyclic nucleotide-binding domain 212 295 2.0E-22 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 Pfam PF00027 Cyclic nucleotide-binding domain 7 92 6.8E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 SMART SM00100 2 104 0.52 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 SMART SM00100 194 313 2.1E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 SUPERFAMILY SSF51206 210 319 1.7E-28 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like Trebr_0454 188e8472f16f2df2af32c8bfb4f51122 414 SUPERFAMILY SSF51206 7 114 1.96E-18 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like Trebr_1470 ad040f57ba04e4914e8b9bc7f4a2e85e 344 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 282 294 2.8E-6 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 Trebr_1470 ad040f57ba04e4914e8b9bc7f4a2e85e 344 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 137 147 2.8E-6 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 Trebr_1470 ad040f57ba04e4914e8b9bc7f4a2e85e 344 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 295 308 2.8E-6 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 Trebr_1470 ad040f57ba04e4914e8b9bc7f4a2e85e 344 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 232 238 2.8E-6 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 Trebr_1470 ad040f57ba04e4914e8b9bc7f4a2e85e 344 SUPERFAMILY SSF51430 24 340 6.68E-90 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Trebr_1470 ad040f57ba04e4914e8b9bc7f4a2e85e 344 Gene3D G3DSA:3.20.20.100 26 344 1.1E-110 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Trebr_1470 ad040f57ba04e4914e8b9bc7f4a2e85e 344 Pfam PF00248 Aldo/keto reductase family 39 339 1.0E-69 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain Trebr_1715 644c9d130ceda9a2f94d10f8d48f5981 117 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 75 8.3E-24 T 13-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Trebr_1715 644c9d130ceda9a2f94d10f8d48f5981 117 SMART SM00360 4 77 9.6E-30 T 13-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Trebr_1715 644c9d130ceda9a2f94d10f8d48f5981 117 Gene3D G3DSA:3.30.70.330 1 113 2.8E-33 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Trebr_1715 644c9d130ceda9a2f94d10f8d48f5981 117 SUPERFAMILY SSF54928 3 111 1.21E-36 T 13-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 Pfam PF00210 Ferritin-like domain 8 143 1.3E-32 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 SUPERFAMILY SSF47240 1 153 8.82E-44 T 13-10-2018 IPR009078 Ferritin-like superfamily Trebr_0172 db6765191fac2042aa95f9af306a2319 156 PIRSF PIRSF002560 1 156 2.1E-54 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 Gene3D G3DSA:1.20.1260.10 1 156 4.5E-57 T 13-10-2018 IPR012347 Ferritin-like Trebr_0172 db6765191fac2042aa95f9af306a2319 156 PRINTS PR00601 Bacterioferritin signature 44 64 2.7E-42 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 PRINTS PR00601 Bacterioferritin signature 107 127 2.7E-42 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 PRINTS PR00601 Bacterioferritin signature 86 106 2.7E-42 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 PRINTS PR00601 Bacterioferritin signature 3 22 2.7E-42 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 PRINTS PR00601 Bacterioferritin signature 65 85 2.7E-42 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 PRINTS PR00601 Bacterioferritin signature 23 43 2.7E-42 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 PRINTS PR00601 Bacterioferritin signature 128 149 2.7E-42 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_0172 db6765191fac2042aa95f9af306a2319 156 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 5.2E-45 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Trebr_2082 fc7d5df48b695ca6837c7d284ab5acf8 367 SUPERFAMILY SSF56349 70 348 1.65E-31 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Trebr_2082 fc7d5df48b695ca6837c7d284ab5acf8 367 Pfam PF00589 Phage integrase family 185 341 3.9E-10 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Trebr_2082 fc7d5df48b695ca6837c7d284ab5acf8 367 Gene3D G3DSA:1.10.443.10 173 355 7.7E-20 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Trebr_1771 e6c17bb167a13bd9129948493587cc89 96 Gene3D G3DSA:3.30.1120.40 1 95 1.1E-36 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 Trebr_1771 e6c17bb167a13bd9129948493587cc89 96 Hamap MF_00819 Putative septation protein SpoVG [spoVG]. 1 94 25.906 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 Trebr_1771 e6c17bb167a13bd9129948493587cc89 96 SUPERFAMILY SSF160537 1 82 1.23E-31 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 Trebr_1771 e6c17bb167a13bd9129948493587cc89 96 Pfam PF04026 SpoVG 1 81 5.0E-36 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 Trebr_1637 b245d92fbd5694be112e866893d475c8 237 Gene3D G3DSA:3.90.550.10 1 229 6.2E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1637 b245d92fbd5694be112e866893d475c8 237 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 104 111 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Trebr_1637 b245d92fbd5694be112e866893d475c8 237 SUPERFAMILY SSF53448 3 228 2.92E-45 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1637 b245d92fbd5694be112e866893d475c8 237 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 229 9.3E-40 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Trebr_1827 2b5ce026bc6efb32246897166e6ebf18 478 SUPERFAMILY SSF55120 237 477 6.24E-51 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1827 2b5ce026bc6efb32246897166e6ebf18 478 Pfam PF00849 RNA pseudouridylate synthase 252 426 7.8E-21 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1827 2b5ce026bc6efb32246897166e6ebf18 478 Gene3D G3DSA:3.30.2350.10 237 476 4.2E-56 T 13-10-2018 Trebr_1827 2b5ce026bc6efb32246897166e6ebf18 478 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 292 306 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1104 220b7216884c7477cbebace158a65303 313 Gene3D G3DSA:3.40.640.10 54 108 3.2E-7 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1104 220b7216884c7477cbebace158a65303 313 Gene3D G3DSA:3.90.1150.10 20 53 3.2E-7 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1104 220b7216884c7477cbebace158a65303 313 SUPERFAMILY SSF53383 21 110 4.35E-9 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_2521 8fdaf3d0d1f848e229c13acd1729c223 220 Gene3D G3DSA:3.30.70.120 2 104 5.3E-12 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Trebr_2521 8fdaf3d0d1f848e229c13acd1729c223 220 Gene3D G3DSA:3.30.70.120 113 213 6.1E-18 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Trebr_2521 8fdaf3d0d1f848e229c13acd1729c223 220 SUPERFAMILY SSF54913 114 211 1.81E-17 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Trebr_2521 8fdaf3d0d1f848e229c13acd1729c223 220 SMART SM00938 120 216 0.0016 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Trebr_2521 8fdaf3d0d1f848e229c13acd1729c223 220 SUPERFAMILY SSF54913 3 97 1.43E-9 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Trebr_1910 ff80753a6027cd886e36ac8521f0678e 296 SUPERFAMILY SSF55120 5 243 5.12E-40 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1910 ff80753a6027cd886e36ac8521f0678e 296 Gene3D G3DSA:3.30.2350.10 1 241 1.2E-44 T 13-10-2018 Trebr_1910 ff80753a6027cd886e36ac8521f0678e 296 Pfam PF00849 RNA pseudouridylate synthase 70 195 6.6E-21 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1268 38f9a981a6e29048468f0726c4dee551 522 Pfam PF03625 Domain of unknown function DUF302 427 487 8.2E-13 T 13-10-2018 IPR005180 Domain of unknown function DUF302 Trebr_1268 38f9a981a6e29048468f0726c4dee551 522 SUPERFAMILY SSF103247 402 515 8.5E-26 T 13-10-2018 IPR035923 TT1751-like domain superfamily Trebr_1268 38f9a981a6e29048468f0726c4dee551 522 Gene3D G3DSA:3.40.710.10 32 383 7.7E-58 T 13-10-2018 Trebr_1268 38f9a981a6e29048468f0726c4dee551 522 Gene3D G3DSA:3.30.310.70 391 519 1.6E-10 T 13-10-2018 IPR035923 TT1751-like domain superfamily Trebr_1268 38f9a981a6e29048468f0726c4dee551 522 Pfam PF00144 Beta-lactamase 36 378 4.9E-44 T 13-10-2018 IPR001466 Beta-lactamase-related Trebr_1268 38f9a981a6e29048468f0726c4dee551 522 SUPERFAMILY SSF56601 34 375 1.57E-51 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Trebr_1275 e9d8227f1b38ab5e1b5e60153049ae88 455 PIRSF PIRSF006603 1 451 3.1E-66 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1275 e9d8227f1b38ab5e1b5e60153049ae88 455 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 411 1.3E-51 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1275 e9d8227f1b38ab5e1b5e60153049ae88 455 Pfam PF01554 MatE 249 408 1.2E-18 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1275 e9d8227f1b38ab5e1b5e60153049ae88 455 Pfam PF01554 MatE 22 182 2.1E-22 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1133 1734906aa6811850204f598e57fe2b71 107 Gene3D G3DSA:3.90.80.10 4 107 1.6E-7 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Trebr_1133 1734906aa6811850204f598e57fe2b71 107 SUPERFAMILY SSF50324 4 103 2.35E-14 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Trebr_2475 0d6c0f90d3bdddd1797cab4cf564c2eb 263 Pfam PF00005 ABC transporter 32 174 1.1E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2475 0d6c0f90d3bdddd1797cab4cf564c2eb 263 SMART SM00382 41 222 2.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_2475 0d6c0f90d3bdddd1797cab4cf564c2eb 263 Gene3D G3DSA:3.40.50.300 8 258 8.8E-61 T 13-10-2018 Trebr_2475 0d6c0f90d3bdddd1797cab4cf564c2eb 263 SUPERFAMILY SSF52540 9 239 2.15E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2475 0d6c0f90d3bdddd1797cab4cf564c2eb 263 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_2435 0bc26712a8aaf9a8a012214cb6d8022f 128 Gene3D G3DSA:3.40.30.10 1 126 6.9E-13 T 13-10-2018 Trebr_2435 0bc26712a8aaf9a8a012214cb6d8022f 128 SUPERFAMILY SSF52833 3 108 1.45E-12 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_0059 38f4b6f5dbeb38938ea87c9fb7a94687 283 Gene3D G3DSA:3.10.310.10 120 270 3.4E-68 T 13-10-2018 Trebr_0059 38f4b6f5dbeb38938ea87c9fb7a94687 283 Pfam PF02567 Phenazine biosynthesis-like protein 6 272 8.7E-34 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Trebr_0059 38f4b6f5dbeb38938ea87c9fb7a94687 283 SUPERFAMILY SSF54506 1 281 5.44E-44 T 13-10-2018 Trebr_0059 38f4b6f5dbeb38938ea87c9fb7a94687 283 PIRSF PIRSF016184 1 282 1.3E-58 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Trebr_0059 38f4b6f5dbeb38938ea87c9fb7a94687 283 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 266 1.7E-37 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Trebr_0059 38f4b6f5dbeb38938ea87c9fb7a94687 283 Gene3D G3DSA:3.10.310.10 4 271 3.4E-68 T 13-10-2018 Trebr_1673 95b5a706462bf39361a75f6d5039982b 552 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 5 322 1.9E-95 T 13-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Trebr_1673 95b5a706462bf39361a75f6d5039982b 552 SUPERFAMILY SSF109755 347 547 1.88E-18 T 13-10-2018 Trebr_1673 95b5a706462bf39361a75f6d5039982b 552 Gene3D G3DSA:1.20.58.220 343 550 2.9E-10 T 13-10-2018 IPR038078 PhoU-like domain superfamily Trebr_1673 95b5a706462bf39361a75f6d5039982b 552 Pfam PF02690 Na+/Pi-cotransporter 16 155 2.5E-46 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Trebr_1673 95b5a706462bf39361a75f6d5039982b 552 Pfam PF02690 Na+/Pi-cotransporter 181 263 1.7E-11 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Trebr_1673 95b5a706462bf39361a75f6d5039982b 552 Pfam PF01895 PhoU domain 490 547 1.6E-4 T 13-10-2018 IPR026022 PhoU domain Trebr_0328 9a904c8cb1ef0440392ed32007396236 368 Gene3D G3DSA:3.90.1720.10 35 167 3.5E-33 T 13-10-2018 Trebr_0328 9a904c8cb1ef0440392ed32007396236 368 Pfam PF00877 NlpC/P60 family 51 156 9.8E-23 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Trebr_0328 9a904c8cb1ef0440392ed32007396236 368 SUPERFAMILY SSF54001 38 161 3.14E-32 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 SUPERFAMILY SSF89000 297 451 2.75E-47 T 13-10-2018 Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 SUPERFAMILY SSF51230 515 589 1.18E-15 T 13-10-2018 IPR011053 Single hybrid motif Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 SUPERFAMILY SSF51230 614 687 3.4E-16 T 13-10-2018 IPR011053 Single hybrid motif Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 Pfam PF02436 Conserved carboxylase domain 292 483 2.7E-54 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 7 586 2.8E-250 T 13-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 Gene3D G3DSA:2.40.50.100 620 688 5.5E-19 T 13-10-2018 Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 Gene3D G3DSA:2.40.50.100 522 590 8.2E-17 T 13-10-2018 Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 Pfam PF00364 Biotin-requiring enzyme 524 589 2.0E-11 T 13-10-2018 IPR000089 Biotin/lipoyl attachment Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 Pfam PF00364 Biotin-requiring enzyme 623 687 5.5E-13 T 13-10-2018 IPR000089 Biotin/lipoyl attachment Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 Pfam PF00682 HMGL-like 4 270 8.4E-52 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 SUPERFAMILY SSF51569 1 299 4.4E-91 T 13-10-2018 Trebr_1687 7f5169749249f8e0d1a3cd5fdfffac22 688 Gene3D G3DSA:3.20.20.70 1 454 5.2E-167 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0792 f9356b96e2cbf1ed605691e986b44663 584 SMART SM00028 61 96 63.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0792 f9356b96e2cbf1ed605691e986b44663 584 SMART SM00028 500 533 74.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0792 f9356b96e2cbf1ed605691e986b44663 584 SMART SM00028 537 570 7.4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0792 f9356b96e2cbf1ed605691e986b44663 584 Gene3D G3DSA:1.25.40.10 41 132 3.3E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0792 f9356b96e2cbf1ed605691e986b44663 584 SUPERFAMILY SSF48452 38 128 2.28E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0792 f9356b96e2cbf1ed605691e986b44663 584 SUPERFAMILY SSF48452 198 573 6.13E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 205 234 5.2E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 5.2E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 5.2E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 246 262 5.2E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 5.2E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 5.2E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 263 281 5.2E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 Gene3D G3DSA:3.40.50.720 6 266 1.2E-110 T 13-10-2018 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 SUPERFAMILY SSF53223 1 121 2.3E-36 T 13-10-2018 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 SUPERFAMILY SSF51735 122 287 1.13E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 288 3.2E-68 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 290 38.434 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 5.1E-38 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Trebr_0626 d54cedbb99f95036ba19b1a3f82648de 292 Gene3D G3DSA:3.40.50.10860 8 284 1.2E-110 T 13-10-2018 Trebr_0736 3a84c97d9ccd3cc66c365206b61fafc1 401 SUPERFAMILY SSF52440 2 68 4.6E-5 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Trebr_0736 3a84c97d9ccd3cc66c365206b61fafc1 401 Gene3D G3DSA:3.30.1490.20 120 184 3.2E-9 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Trebr_0736 3a84c97d9ccd3cc66c365206b61fafc1 401 Gene3D G3DSA:3.40.50.20 1 118 6.4E-30 T 13-10-2018 Trebr_0736 3a84c97d9ccd3cc66c365206b61fafc1 401 Pfam PF02655 ATP-grasp domain 102 278 1.9E-11 T 13-10-2018 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 Trebr_0736 3a84c97d9ccd3cc66c365206b61fafc1 401 SUPERFAMILY SSF56059 103 308 2.3E-30 T 13-10-2018 Trebr_0736 3a84c97d9ccd3cc66c365206b61fafc1 401 Gene3D G3DSA:3.30.470.20 187 401 9.7E-33 T 13-10-2018 Trebr_0078 b5b7ce37b157d4b2f7eda11a12791ce5 155 Pfam PF00583 Acetyltransferase (GNAT) family 27 116 2.3E-9 T 13-10-2018 IPR000182 GNAT domain Trebr_0078 b5b7ce37b157d4b2f7eda11a12791ce5 155 SUPERFAMILY SSF55729 30 130 3.09E-12 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0078 b5b7ce37b157d4b2f7eda11a12791ce5 155 Gene3D G3DSA:3.40.630.30 2 143 1.7E-11 T 13-10-2018 Trebr_0742 d87152964f0dfbc6de8356209edbf509 292 Gene3D G3DSA:3.90.550.10 2 192 9.5E-6 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0742 d87152964f0dfbc6de8356209edbf509 292 Pfam PF11735 Cryptococcal mannosyltransferase 1 37 218 4.6E-9 T 13-10-2018 IPR021047 Mannosyltransferase 1, CMT1 Trebr_0993 1a2e63e9b0db4b4c0e9866146bc731e9 426 Pfam PF02687 FtsX-like permease family 295 417 8.3E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_0993 1a2e63e9b0db4b4c0e9866146bc731e9 426 Pfam PF12704 MacB-like periplasmic core domain 25 238 8.7E-15 T 13-10-2018 IPR025857 MacB-like periplasmic core domain Trebr_1725 605c61b94ad619bc9c0d099aca8e0992 225 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 64 194 2.6E-27 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Trebr_1725 605c61b94ad619bc9c0d099aca8e0992 225 SUPERFAMILY SSF55083 62 219 8.37E-38 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Trebr_1725 605c61b94ad619bc9c0d099aca8e0992 225 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 76 195 5.6E-30 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Trebr_1725 605c61b94ad619bc9c0d099aca8e0992 225 Gene3D G3DSA:3.30.70.560 61 220 2.3E-38 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 Gene3D G3DSA:3.90.226.10 1 230 6.6E-78 T 13-10-2018 Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 SUPERFAMILY SSF52096 4 230 5.71E-67 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 Pfam PF01039 Carboxyl transferase domain 7 493 3.2E-171 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 SUPERFAMILY SSF52096 197 474 3.6E-81 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 108 126 3.8E-7 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 74 88 3.8E-7 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 173 184 3.8E-7 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 144 161 3.8E-7 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Trebr_1024 10467c250f768e5e7b5d8f3f45ba5c2e 495 Gene3D G3DSA:3.90.226.10 240 495 1.3E-89 T 13-10-2018 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 458 82.221 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 458 7.2E-217 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 ProSitePatterns PS00163 Fumarate lyases signature. 315 324 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 Gene3D G3DSA:1.10.40.30 406 458 2.0E-24 T 13-10-2018 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 Gene3D G3DSA:1.10.275.10 1 136 2.5E-51 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 Gene3D G3DSA:1.20.200.10 137 404 6.0E-112 T 13-10-2018 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 SUPERFAMILY SSF48557 3 458 3.93E-150 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 PRINTS PR00145 Argininosuccinate lyase family signature 315 331 2.4E-5 T 13-10-2018 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 PRINTS PR00145 Argininosuccinate lyase family signature 173 193 2.4E-5 T 13-10-2018 Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 Pfam PF00206 Lyase 11 340 1.2E-110 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 PRINTS PR00149 Fumarate lyase superfamily signature 178 196 2.3E-31 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 PRINTS PR00149 Fumarate lyase superfamily signature 269 296 2.3E-31 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 PRINTS PR00149 Fumarate lyase superfamily signature 315 331 2.3E-31 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 PRINTS PR00149 Fumarate lyase superfamily signature 132 150 2.3E-31 T 13-10-2018 IPR000362 Fumarate lyase family Trebr_2037 4a060ed2c98cafcbb35a3774e51f7e33 458 Pfam PF10415 Fumarase C C-terminus 406 458 2.3E-23 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Trebr_2015 0a9071892e6a9b05fdc30f06a100f0e1 143 SUPERFAMILY SSF54637 22 132 3.08E-21 T 13-10-2018 IPR029069 HotDog domain superfamily Trebr_2015 0a9071892e6a9b05fdc30f06a100f0e1 143 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 24 128 1.3E-15 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Trebr_2015 0a9071892e6a9b05fdc30f06a100f0e1 143 Pfam PF03061 Thioesterase superfamily 53 126 1.3E-6 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Trebr_2015 0a9071892e6a9b05fdc30f06a100f0e1 143 Gene3D G3DSA:3.10.129.10 8 142 3.9E-33 T 13-10-2018 Trebr_1180 3af0131de66b5a2f672430bedd4f4dfb 293 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 2 293 7.3E-57 T 13-10-2018 IPR005229 Conserved hypothetical protein CHP00255 Trebr_1180 3af0131de66b5a2f672430bedd4f4dfb 293 Pfam PF03755 YicC-like family, N-terminal region 1 158 6.9E-34 T 13-10-2018 IPR013527 YicC-like, N-terminal Trebr_1180 3af0131de66b5a2f672430bedd4f4dfb 293 Pfam PF08340 Domain of unknown function (DUF1732) 209 293 1.0E-28 T 13-10-2018 IPR013551 Domain of unknown function DUF1732 Trebr_0271 2688bb7e6b83280f44d15cd6ac063115 266 Gene3D G3DSA:3.10.310.50 24 170 1.3E-47 T 13-10-2018 Trebr_0271 2688bb7e6b83280f44d15cd6ac063115 266 Pfam PF04536 TPM domain 37 159 1.3E-39 T 13-10-2018 IPR007621 TPM domain Trebr_1734 d283d5720bbfc2d9059a63dff53580c0 862 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 69 725 1.1E-178 T 13-10-2018 Trebr_1734 d283d5720bbfc2d9059a63dff53580c0 862 SUPERFAMILY SSF56601 215 780 9.24E-101 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Trebr_1734 d283d5720bbfc2d9059a63dff53580c0 862 Pfam PF00912 Transglycosylase 58 233 1.6E-55 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_1734 d283d5720bbfc2d9059a63dff53580c0 862 Gene3D G3DSA:3.40.710.10 262 343 4.5E-7 T 13-10-2018 Trebr_1734 d283d5720bbfc2d9059a63dff53580c0 862 Gene3D G3DSA:3.40.710.10 390 783 4.2E-93 T 13-10-2018 Trebr_1734 d283d5720bbfc2d9059a63dff53580c0 862 Gene3D G3DSA:1.10.3810.10 51 249 1.2E-65 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_1734 d283d5720bbfc2d9059a63dff53580c0 862 SUPERFAMILY SSF53955 47 248 5.34E-64 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily Trebr_1734 d283d5720bbfc2d9059a63dff53580c0 862 Pfam PF00905 Penicillin binding protein transpeptidase domain 418 692 2.4E-23 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Trebr_1013 7d89ea5a940763808630abc5fb8bf8fa 277 Gene3D G3DSA:3.20.20.140 2 271 2.1E-66 T 13-10-2018 Trebr_1013 7d89ea5a940763808630abc5fb8bf8fa 277 SUPERFAMILY SSF89550 1 276 9.03E-47 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Trebr_1013 7d89ea5a940763808630abc5fb8bf8fa 277 Pfam PF02811 PHP domain 4 205 3.6E-14 T 13-10-2018 IPR004013 PHP domain GO:0003824 Trebr_1013 7d89ea5a940763808630abc5fb8bf8fa 277 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 4 252 3.0E-56 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 Trebr_1672 bcec92ac5f16bbb76070c95d26738830 510 SMART SM00854 222 467 5.5E-77 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA Trebr_1672 bcec92ac5f16bbb76070c95d26738830 510 SUPERFAMILY SSF56300 223 466 1.23E-33 T 13-10-2018 Trebr_1672 bcec92ac5f16bbb76070c95d26738830 510 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 223 465 1.1E-66 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA Trebr_1889 8f8f682204ac0f80bb5f0892baa020dd 270 PIRSF PIRSF036894 15 268 2.2E-62 T 13-10-2018 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 Trebr_1889 8f8f682204ac0f80bb5f0892baa020dd 270 PIRSF PIRSF036894 1 28 12.0 T 13-10-2018 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 Trebr_1889 8f8f682204ac0f80bb5f0892baa020dd 270 Pfam PF01238 Phosphomannose isomerase type I 47 165 2.6E-6 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 Trebr_1889 8f8f682204ac0f80bb5f0892baa020dd 270 Gene3D G3DSA:2.60.120.10 1 187 8.6E-56 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_1889 8f8f682204ac0f80bb5f0892baa020dd 270 SUPERFAMILY SSF51182 1 255 1.35E-60 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily Trebr_1453 aca02978d19b0b3df814a1e68e543f8b 329 SMART SM00342 228 311 1.1E-12 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1453 aca02978d19b0b3df814a1e68e543f8b 329 SUPERFAMILY SSF46689 265 313 2.73E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1453 aca02978d19b0b3df814a1e68e543f8b 329 Pfam PF12833 Helix-turn-helix domain 237 313 8.8E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1453 aca02978d19b0b3df814a1e68e543f8b 329 Gene3D G3DSA:1.10.10.60 208 321 1.1E-22 T 13-10-2018 Trebr_0219 927d763e5627f5150d4c940d485c66b3 127 Gene3D G3DSA:3.30.70.120 31 127 8.1E-9 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Trebr_0257 cdaa4f0839dab2e64a824ace9281b9e2 340 Gene3D G3DSA:3.10.520.20 22 339 6.2E-113 T 13-10-2018 Trebr_0257 cdaa4f0839dab2e64a824ace9281b9e2 340 Pfam PF02424 ApbE family 34 305 2.7E-85 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Trebr_0257 cdaa4f0839dab2e64a824ace9281b9e2 340 SUPERFAMILY SSF143631 30 326 6.28E-95 T 13-10-2018 IPR003374 ApbE-like superfamily Trebr_0257 cdaa4f0839dab2e64a824ace9281b9e2 340 PIRSF PIRSF006268 1 332 1.6E-102 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Trebr_0270 9143b4bed54e30dbc6c337a5f85853fb 244 Gene3D G3DSA:3.10.310.50 112 235 2.0E-24 T 13-10-2018 Trebr_0270 9143b4bed54e30dbc6c337a5f85853fb 244 Pfam PF04536 TPM domain 127 205 1.5E-6 T 13-10-2018 IPR007621 TPM domain Trebr_2186 6c2ee4d2bc96129b0d5826268abc4553 106 SMART SM00530 6 62 2.7E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2186 6c2ee4d2bc96129b0d5826268abc4553 106 Pfam PF01381 Helix-turn-helix 14 62 6.9E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2186 6c2ee4d2bc96129b0d5826268abc4553 106 SUPERFAMILY SSF47413 3 69 4.22E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2186 6c2ee4d2bc96129b0d5826268abc4553 106 Gene3D G3DSA:1.10.260.40 3 105 6.4E-15 T 13-10-2018 Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 Gene3D G3DSA:3.30.565.10 297 469 2.3E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 SUPERFAMILY SSF47384 215 296 1.82E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 SUPERFAMILY SSF55874 285 448 2.33E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 Gene3D G3DSA:1.10.287.130 189 296 3.7E-15 T 13-10-2018 Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 463 2.9E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 SMART SM00387 344 467 1.8E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 Pfam PF00512 His Kinase A (phospho-acceptor) domain 232 294 1.0E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 SMART SM00388 231 295 2.3E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 1.9E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_0802 c01374db701c9ec38489ab113fa77e9d 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 415 1.9E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Trebr_1839 5d16f36f1c3a7e9c5cf2e172e9b0c8ab 330 SUPERFAMILY SSF53448 81 278 3.49E-9 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1839 5d16f36f1c3a7e9c5cf2e172e9b0c8ab 330 Gene3D G3DSA:3.90.550.10 51 250 4.0E-5 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0721 ccad822716be030878804bf64219225c 151 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 7 124 1.9E-12 T 13-10-2018 Trebr_2262 6fe1af3753988afada1d0938c8427b77 212 SUPERFAMILY SSF54631 1 135 3.66E-34 T 13-10-2018 Trebr_2262 6fe1af3753988afada1d0938c8427b77 212 Pfam PF00571 CBS domain 78 130 6.5E-10 T 13-10-2018 IPR000644 CBS domain Trebr_2262 6fe1af3753988afada1d0938c8427b77 212 Pfam PF00571 CBS domain 3 55 6.2E-15 T 13-10-2018 IPR000644 CBS domain Trebr_2262 6fe1af3753988afada1d0938c8427b77 212 SMART SM00116 85 132 2.2E-8 T 13-10-2018 IPR000644 CBS domain Trebr_2262 6fe1af3753988afada1d0938c8427b77 212 SMART SM00116 10 58 1.1E-9 T 13-10-2018 IPR000644 CBS domain Trebr_2262 6fe1af3753988afada1d0938c8427b77 212 SUPERFAMILY SSF55021 145 207 4.16E-5 T 13-10-2018 Trebr_2262 6fe1af3753988afada1d0938c8427b77 212 Gene3D G3DSA:3.10.580.10 1 154 7.1E-42 T 13-10-2018 Trebr_2002 4892a0992f4f8a2c072a5383d3d1c2a1 253 SUPERFAMILY SSF48452 145 233 7.59E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1823 1aff17b3c4dbd82203a299010985af75 423 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 251 1.9E-54 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 Trebr_1823 1aff17b3c4dbd82203a299010985af75 423 Pfam PF00149 Calcineurin-like phosphoesterase 1 100 2.6E-9 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Trebr_1823 1aff17b3c4dbd82203a299010985af75 423 Gene3D G3DSA:3.60.21.10 1 269 8.8E-70 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like Trebr_1823 1aff17b3c4dbd82203a299010985af75 423 SUPERFAMILY SSF56300 1 260 2.73E-41 T 13-10-2018 Trebr_0468 fbe3a1a85874d7ab7024d0ee5e240946 304 Gene3D G3DSA:1.10.3720.10 10 295 8.1E-56 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0468 fbe3a1a85874d7ab7024d0ee5e240946 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 298 1.9E-9 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0468 fbe3a1a85874d7ab7024d0ee5e240946 304 SUPERFAMILY SSF161098 18 304 3.83E-47 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1635 7c6761de315345b0fe24b77e5bd2974b 381 Pfam PF01757 Acyltransferase family 22 366 1.8E-15 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Trebr_1918 a211830ed3f5dab1c3083dead96e2b0c 726 SUPERFAMILY SSF49785 549 726 1.62E-14 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_1918 a211830ed3f5dab1c3083dead96e2b0c 726 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 141 393 6.5E-11 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 Trebr_1918 a211830ed3f5dab1c3083dead96e2b0c 726 Pfam PF09212 Carbohydrate binding module 27 555 725 3.0E-17 T 13-10-2018 IPR015295 Carbohydrate binding module 27 Trebr_1918 a211830ed3f5dab1c3083dead96e2b0c 726 Gene3D G3DSA:2.60.40.10 448 547 3.8E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1918 a211830ed3f5dab1c3083dead96e2b0c 726 Gene3D G3DSA:3.20.20.80 61 434 1.3E-109 T 13-10-2018 Trebr_1918 a211830ed3f5dab1c3083dead96e2b0c 726 Gene3D G3DSA:2.60.120.260 548 726 2.6E-44 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_1918 a211830ed3f5dab1c3083dead96e2b0c 726 SUPERFAMILY SSF51445 45 394 2.88E-56 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 Gene3D G3DSA:1.10.10.60 108 155 8.2E-7 T 13-10-2018 Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 SMART SM00871 191 341 4.5E-4 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 Gene3D G3DSA:3.20.80.10 192 341 1.7E-9 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 SMART SM00342 38 147 1.6E-8 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 Gene3D G3DSA:1.10.10.60 19 75 1.4E-9 T 13-10-2018 Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 SUPERFAMILY SSF46689 42 71 6.72E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 SUPERFAMILY SSF55136 195 321 5.76E-7 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 Pfam PF14526 Integron-associated effector binding protein 195 330 1.2E-8 T 13-10-2018 IPR029441 Integron-associated effector binding protein Trebr_0889 bf23aa2e5e606e0df3ef4a9fae5802ae 341 SUPERFAMILY SSF46689 116 150 2.96E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 SMART SM00421 867 924 1.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 Gene3D G3DSA:3.40.50.2300 695 823 1.6E-22 T 13-10-2018 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 SUPERFAMILY SSF52172 692 821 5.98E-24 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 Pfam PF00196 Bacterial regulatory proteins, luxR family 869 923 1.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 900 912 7.3E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 884 900 7.3E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 870 884 7.3E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 SUPERFAMILY SSF46894 858 925 1.09E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 Gene3D G3DSA:1.10.10.10 862 926 7.8E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 Pfam PF00072 Response regulator receiver domain 699 806 4.7E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 Pfam PF07695 7TM diverse intracellular signalling 203 370 3.9E-8 T 13-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Trebr_1862 e1c031c95542efc7bc543e3c5dc611d7 927 SMART SM00448 697 809 2.9E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1070 d2c46fab880eddc2284323d53800bb2b 221 SUPERFAMILY SSF52058 37 175 1.36E-18 T 13-10-2018 Trebr_1070 d2c46fab880eddc2284323d53800bb2b 221 Gene3D G3DSA:3.80.10.10 18 202 8.1E-23 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily Trebr_1265 21a0976664fa954fcc53b0419c13dd78 301 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 279 5.5E-39 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_1265 21a0976664fa954fcc53b0419c13dd78 301 Gene3D G3DSA:1.10.3470.10 35 205 1.3E-5 T 13-10-2018 IPR037294 ABC transporter, BtuC-like Trebr_0111 c9885591b05a1a97461e75a241071ff3 373 Pfam PF01757 Acyltransferase family 19 343 1.5E-16 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Trebr_0607 3d147c28105e7056265945233932691f 302 SUPERFAMILY SSF55729 137 287 2.4E-14 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0607 3d147c28105e7056265945233932691f 302 Pfam PF00583 Acetyltransferase (GNAT) family 199 269 6.1E-7 T 13-10-2018 IPR000182 GNAT domain Trebr_0607 3d147c28105e7056265945233932691f 302 Gene3D G3DSA:3.40.630.30 101 287 1.3E-11 T 13-10-2018 Trebr_0607 3d147c28105e7056265945233932691f 302 Pfam PF03682 Uncharacterised protein family (UPF0158) 26 124 8.3E-9 T 13-10-2018 IPR005361 Uncharacterised protein family UPF0158 Trebr_1508 7b9fc0d29c823cc3f62dcc83fe54e5df 259 Gene3D G3DSA:1.10.10.60 150 245 1.7E-19 T 13-10-2018 Trebr_1508 7b9fc0d29c823cc3f62dcc83fe54e5df 259 SMART SM00342 157 240 2.3E-13 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_1508 7b9fc0d29c823cc3f62dcc83fe54e5df 259 Pfam PF12833 Helix-turn-helix domain 163 241 1.2E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0678 f4fe98b6e26a80670fbc331babddf937 254 Gene3D G3DSA:2.160.20.60 23 250 1.2E-32 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 Trebr_0678 f4fe98b6e26a80670fbc331babddf937 254 SUPERFAMILY SSF69336 17 235 2.62E-42 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 Trebr_0678 f4fe98b6e26a80670fbc331babddf937 254 Pfam PF01493 GXGXG motif 12 204 4.0E-33 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 Trebr_1438 428d6ad9c4fda002a7ef17175b403350 460 SUPERFAMILY SSF81606 254 459 1.57E-8 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1438 428d6ad9c4fda002a7ef17175b403350 460 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 266 458 1.4E-30 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1438 428d6ad9c4fda002a7ef17175b403350 460 Gene3D G3DSA:3.60.40.10 212 458 1.9E-45 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1438 428d6ad9c4fda002a7ef17175b403350 460 SMART SM00331 239 458 2.3E-38 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_2310 abcb91e45c53034ff0231ff0494833ea 412 Gene3D G3DSA:3.40.630.30 280 386 1.2E-25 T 13-10-2018 Trebr_2310 abcb91e45c53034ff0231ff0494833ea 412 Gene3D G3DSA:3.40.630.30 169 250 1.2E-15 T 13-10-2018 Trebr_2310 abcb91e45c53034ff0231ff0494833ea 412 Pfam PF02388 FemAB family 296 403 2.0E-25 T 13-10-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 Trebr_2310 abcb91e45c53034ff0231ff0494833ea 412 Pfam PF02388 FemAB family 63 239 4.2E-8 T 13-10-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 Trebr_2310 abcb91e45c53034ff0231ff0494833ea 412 SUPERFAMILY SSF55729 184 398 2.97E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_2310 abcb91e45c53034ff0231ff0494833ea 412 Gene3D G3DSA:3.40.630.30 71 168 1.2E-15 T 13-10-2018 Trebr_0108 19f6f2a1d93b2d170b2674149cc01df2 197 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 8 166 27.17 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Trebr_0108 19f6f2a1d93b2d170b2674149cc01df2 197 Pfam PF03975 CheD chemotactic sensory transduction 56 161 2.3E-29 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Trebr_0108 19f6f2a1d93b2d170b2674149cc01df2 197 SUPERFAMILY SSF64438 13 169 1.37E-43 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Trebr_0108 19f6f2a1d93b2d170b2674149cc01df2 197 Gene3D G3DSA:3.30.1330.200 11 172 3.4E-47 T 13-10-2018 IPR038592 CheD-like superfamily Trebr_1052 ba0473c72b5354460da75713f5f94005 176 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 42 169 5.7E-34 T 13-10-2018 IPR010181 CGCAxxGCC motif Trebr_1052 ba0473c72b5354460da75713f5f94005 176 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 42 170 1.5E-18 T 13-10-2018 IPR010181 CGCAxxGCC motif Trebr_1167 6ef436ebbc42622f8eedb5a0b1f2fa0b 124 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 123 4.9E-24 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Trebr_1167 6ef436ebbc42622f8eedb5a0b1f2fa0b 124 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 123 2.1E-29 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Trebr_1167 6ef436ebbc42622f8eedb5a0b1f2fa0b 124 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 122 1.0E-25 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Trebr_1167 6ef436ebbc42622f8eedb5a0b1f2fa0b 124 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 123 22.711 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Trebr_1167 6ef436ebbc42622f8eedb5a0b1f2fa0b 124 SUPERFAMILY SSF56214 1 122 8.37E-29 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Trebr_1167 6ef436ebbc42622f8eedb5a0b1f2fa0b 124 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 119 1.0E-19 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Trebr_1167 6ef436ebbc42622f8eedb5a0b1f2fa0b 124 Gene3D G3DSA:3.90.470.20 1 124 9.7E-34 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Trebr_1740 3cf165e9ee25b15ba25f3f309f4805b0 426 Pfam PF03687 Uncharacterised protein family (UPF0164) 41 325 3.9E-73 T 13-10-2018 IPR005362 Uncharacterised protein family UPF0164 Trebr_2287 588d0fb21e155c9f96dab5c25f49f0f0 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 59 14.292 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2287 588d0fb21e155c9f96dab5c25f49f0f0 66 Gene3D G3DSA:1.10.287.310 1 65 1.5E-18 T 13-10-2018 Trebr_2287 588d0fb21e155c9f96dab5c25f49f0f0 66 Pfam PF00831 Ribosomal L29 protein 6 59 2.1E-17 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2287 588d0fb21e155c9f96dab5c25f49f0f0 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 7 59 4.6E-13 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2287 588d0fb21e155c9f96dab5c25f49f0f0 66 SUPERFAMILY SSF46561 6 61 1.96E-16 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_1446 150748383a835f9922cdfc595de4c37d 309 Gene3D G3DSA:1.10.3720.10 64 305 5.3E-62 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1446 150748383a835f9922cdfc595de4c37d 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 300 9.6E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1446 150748383a835f9922cdfc595de4c37d 309 SUPERFAMILY SSF161098 68 298 1.16E-54 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0366 3eafa0d6a8f6fd700813ba0d2bc15e4b 264 Gene3D G3DSA:1.10.150.240 20 96 7.8E-16 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Trebr_0366 3eafa0d6a8f6fd700813ba0d2bc15e4b 264 SUPERFAMILY SSF56784 5 250 1.78E-44 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_0366 3eafa0d6a8f6fd700813ba0d2bc15e4b 264 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 176 6.4E-24 T 13-10-2018 Trebr_0366 3eafa0d6a8f6fd700813ba0d2bc15e4b 264 Pfam PF13242 HAD-hyrolase-like 193 248 9.3E-11 T 13-10-2018 Trebr_0596 76b08f531a1c79ff3a7d93969694aa12 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 281 9.7E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0596 76b08f531a1c79ff3a7d93969694aa12 291 SUPERFAMILY SSF161098 35 285 3.36E-54 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0596 76b08f531a1c79ff3a7d93969694aa12 291 Gene3D G3DSA:1.10.3720.10 33 282 1.0E-46 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0702 722c135b0b1c5163493eedf83b6c262e 669 PRINTS PR00834 HtrA/DegQ protease family signature 204 221 5.2E-5 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_0702 722c135b0b1c5163493eedf83b6c262e 669 PRINTS PR00834 HtrA/DegQ protease family signature 149 173 5.2E-5 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_0702 722c135b0b1c5163493eedf83b6c262e 669 PRINTS PR00834 HtrA/DegQ protease family signature 182 199 5.2E-5 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_0702 722c135b0b1c5163493eedf83b6c262e 669 Pfam PF13365 Trypsin-like peptidase domain 73 211 5.1E-9 T 13-10-2018 Trebr_0702 722c135b0b1c5163493eedf83b6c262e 669 Gene3D G3DSA:2.40.10.120 31 236 3.4E-18 T 13-10-2018 Trebr_0702 722c135b0b1c5163493eedf83b6c262e 669 SUPERFAMILY SSF50494 26 228 4.68E-20 T 13-10-2018 IPR009003 Peptidase S1, PA clan Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 SUPERFAMILY SSF54713 142 277 1.26E-31 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 Gene3D G3DSA:1.10.286.20 192 236 1.8E-40 T 13-10-2018 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 Hamap MF_00050 Elongation factor Ts [tsf]. 1 278 54.324 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 Gene3D G3DSA:3.30.479.20 142 277 1.8E-40 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 Pfam PF00889 Elongation factor TS 70 277 1.6E-53 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 Gene3D G3DSA:3.30.479.20 56 136 1.4E-18 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 SUPERFAMILY SSF54713 56 134 3.76E-16 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 Gene3D G3DSA:1.10.8.10 1 55 2.3E-21 T 13-10-2018 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 277 2.1E-73 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Trebr_1421 e20391f9bfeb9a3838fb7ffa05a2002f 278 SUPERFAMILY SSF46934 1 55 2.55E-16 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 Trebr_2075 7afc55b3c90795dcf2a4d513f1f7c5b6 223 Gene3D G3DSA:3.40.50.300 16 221 1.6E-39 T 13-10-2018 Trebr_2075 7afc55b3c90795dcf2a4d513f1f7c5b6 223 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 20 221 15.17 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Trebr_2075 7afc55b3c90795dcf2a4d513f1f7c5b6 223 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 22 193 1.5E-22 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Trebr_2075 7afc55b3c90795dcf2a4d513f1f7c5b6 223 SUPERFAMILY SSF52540 21 215 3.06E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2075 7afc55b3c90795dcf2a4d513f1f7c5b6 223 Pfam PF01121 Dephospho-CoA kinase 22 190 5.9E-21 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Trebr_1290 aa5e97013765ca035166d6ee73cddab8 308 Pfam PF00753 Metallo-beta-lactamase superfamily 22 143 8.2E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_1290 aa5e97013765ca035166d6ee73cddab8 308 SUPERFAMILY SSF56281 7 304 2.09E-78 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_1290 aa5e97013765ca035166d6ee73cddab8 308 SMART SM00849 20 200 0.0045 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_1290 aa5e97013765ca035166d6ee73cddab8 308 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 6 304 8.7E-107 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 Trebr_1290 aa5e97013765ca035166d6ee73cddab8 308 Pfam PF12706 Beta-lactamase superfamily domain 201 270 2.5E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_1290 aa5e97013765ca035166d6ee73cddab8 308 Hamap MF_01818 Ribonuclease BN [rbn]. 3 304 35.772 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 Trebr_1290 aa5e97013765ca035166d6ee73cddab8 308 Gene3D G3DSA:3.60.15.10 3 304 4.6E-89 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_0089 b840ccbcb58951d09529768a967fe740 737 Pfam PF09822 ABC-type uncharacterized transport system 208 468 1.9E-47 T 13-10-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Trebr_0089 b840ccbcb58951d09529768a967fe740 737 Pfam PF09822 ABC-type uncharacterized transport system 69 208 1.2E-39 T 13-10-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 210 431 7.9E-87 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 SUPERFAMILY SSF47917 444 550 1.96E-21 T 13-10-2018 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 84 201 8.0E-37 T 13-10-2018 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 1 578 49.358 T 13-10-2018 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 Gene3D G3DSA:3.40.50.300 73 431 4.9E-170 T 13-10-2018 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 Gene3D G3DSA:1.10.1140.10 432 582 3.6E-43 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 65 1.3E-9 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 Gene3D G3DSA:2.40.50.100 115 183 4.9E-170 T 13-10-2018 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 Gene3D G3DSA:2.40.30.20 1 71 5.1E-23 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 SUPERFAMILY SSF50615 4 70 1.1E-9 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Trebr_1698 945c181f4052a93c50ed005b13eb9f42 588 SUPERFAMILY SSF52540 147 435 8.87E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1109 1a11f2db536c3cc2472f3b12fdf5bbd4 220 SUPERFAMILY SSF56784 11 202 2.13E-30 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_1109 1a11f2db536c3cc2472f3b12fdf5bbd4 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 198 4.1E-15 T 13-10-2018 Trebr_1109 1a11f2db536c3cc2472f3b12fdf5bbd4 220 Gene3D G3DSA:3.40.50.1000 12 201 1.8E-26 T 13-10-2018 IPR023214 HAD superfamily Trebr_1109 1a11f2db536c3cc2472f3b12fdf5bbd4 220 Gene3D G3DSA:1.20.120.1600 24 98 1.8E-26 T 13-10-2018 Trebr_0322 5c25ce23b38c6cedd673a5fb6e956ae4 614 SUPERFAMILY SSF158472 329 376 1.96E-7 T 13-10-2018 Trebr_0322 5c25ce23b38c6cedd673a5fb6e956ae4 614 SUPERFAMILY SSF55874 454 597 4.85E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0322 5c25ce23b38c6cedd673a5fb6e956ae4 614 Pfam PF06580 Histidine kinase 392 470 2.7E-22 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Trebr_0322 5c25ce23b38c6cedd673a5fb6e956ae4 614 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 490 599 8.4E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0322 5c25ce23b38c6cedd673a5fb6e956ae4 614 SMART SM00304 328 380 3.6E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0322 5c25ce23b38c6cedd673a5fb6e956ae4 614 Gene3D G3DSA:3.30.565.10 446 601 6.5E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0322 5c25ce23b38c6cedd673a5fb6e956ae4 614 Gene3D G3DSA:1.20.1480.50 291 384 7.0E-11 T 13-10-2018 Trebr_0322 5c25ce23b38c6cedd673a5fb6e956ae4 614 Pfam PF02743 Cache domain 39 289 4.1E-20 T 13-10-2018 IPR033479 Double Cache domain 1 Trebr_0638 4e38aed8b7a45d94b0f5b3d5ee88d5f8 404 Gene3D G3DSA:3.60.40.10 194 404 2.0E-21 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0638 4e38aed8b7a45d94b0f5b3d5ee88d5f8 404 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 235 402 2.2E-18 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0638 4e38aed8b7a45d94b0f5b3d5ee88d5f8 404 SUPERFAMILY SSF81606 253 401 6.28E-10 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0638 4e38aed8b7a45d94b0f5b3d5ee88d5f8 404 SMART SM00331 186 403 3.4E-5 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1927 2985b14f507dacd5de4ca0a69d3ad985 94 SUPERFAMILY SSF54909 1 91 5.37E-23 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel Trebr_1927 2985b14f507dacd5de4ca0a69d3ad985 94 Gene3D G3DSA:3.30.70.100 1 94 1.4E-22 T 13-10-2018 Trebr_1927 2985b14f507dacd5de4ca0a69d3ad985 94 Pfam PF07876 Stress responsive A/B Barrel Domain 3 92 8.7E-20 T 13-10-2018 IPR013097 Stress responsive alpha-beta barrel Trebr_1927 2985b14f507dacd5de4ca0a69d3ad985 94 SMART SM00886 2 93 1.5E-23 T 13-10-2018 IPR013097 Stress responsive alpha-beta barrel Trebr_2348 ae91969244d07614d2a5ad6cd2237bb6 375 Pfam PF01636 Phosphotransferase enzyme family 31 273 4.7E-16 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase Trebr_2348 ae91969244d07614d2a5ad6cd2237bb6 375 SUPERFAMILY SSF56112 14 359 8.0E-26 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily Trebr_2348 ae91969244d07614d2a5ad6cd2237bb6 375 Gene3D G3DSA:3.90.1200.10 136 354 4.8E-7 T 13-10-2018 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 Pfam PF02254 TrkA-N domain 244 374 2.2E-19 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 Pfam PF02254 TrkA-N domain 3 110 9.1E-25 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 SUPERFAMILY SSF51735 1 160 1.75E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 SUPERFAMILY SSF116726 390 476 3.79E-10 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 Pfam PF02080 TrkA-C domain 166 234 1.5E-9 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 Pfam PF02080 TrkA-C domain 407 476 1.9E-9 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 Gene3D G3DSA:3.30.70.1450 392 479 1.6E-14 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 Gene3D G3DSA:3.30.70.1450 151 240 3.0E-13 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 Gene3D G3DSA:3.40.50.720 242 391 7.3E-26 T 13-10-2018 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 6.2E-15 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 6.2E-15 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 6.2E-15 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 6.2E-15 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 Gene3D G3DSA:3.40.50.720 1 149 1.4E-38 T 13-10-2018 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 SUPERFAMILY SSF116726 149 235 2.49E-11 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Trebr_2427 aa1d9c16a0257b94df5f6207225f3e74 480 SUPERFAMILY SSF51735 242 402 4.66E-18 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1108 dc30c03dff23fddbf02116fa7a3c33ff 573 Pfam PF12729 Four helix bundle sensory module for signal transduction 2 186 2.3E-21 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Trebr_1108 dc30c03dff23fddbf02116fa7a3c33ff 573 Gene3D G3DSA:1.10.287.950 226 506 1.5E-65 T 13-10-2018 Trebr_1108 dc30c03dff23fddbf02116fa7a3c33ff 573 SMART SM00283 271 504 2.4E-63 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1108 dc30c03dff23fddbf02116fa7a3c33ff 573 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 321 471 3.0E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1108 dc30c03dff23fddbf02116fa7a3c33ff 573 SUPERFAMILY SSF58104 260 509 3.31E-59 T 13-10-2018 Trebr_0182 d50e3c618745fd33d7bfae32b0c4f35f 332 Pfam PF01936 NYN domain 7 144 2.3E-24 T 13-10-2018 IPR021139 NYN domain, limkain-b1-type Trebr_0182 d50e3c618745fd33d7bfae32b0c4f35f 332 Gene3D G3DSA:3.40.50.1010 2 149 2.1E-14 T 13-10-2018 Trebr_1838 21024450f3f6f3eb4628664c781385c0 844 SUPERFAMILY SSF53756 379 488 1.88E-5 T 13-10-2018 Trebr_1838 21024450f3f6f3eb4628664c781385c0 844 Pfam PF13489 Methyltransferase domain 652 793 4.0E-19 T 13-10-2018 Trebr_1838 21024450f3f6f3eb4628664c781385c0 844 SUPERFAMILY SSF53448 1 204 1.31E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1838 21024450f3f6f3eb4628664c781385c0 844 Gene3D G3DSA:3.40.50.2000 375 502 9.0E-6 T 13-10-2018 Trebr_1838 21024450f3f6f3eb4628664c781385c0 844 Pfam PF02348 Cytidylyltransferase 3 187 3.9E-30 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Trebr_1838 21024450f3f6f3eb4628664c781385c0 844 SUPERFAMILY SSF53335 652 805 7.12E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1838 21024450f3f6f3eb4628664c781385c0 844 Gene3D G3DSA:3.40.50.150 641 805 5.4E-30 T 13-10-2018 Trebr_1838 21024450f3f6f3eb4628664c781385c0 844 Gene3D G3DSA:3.90.550.10 1 161 3.8E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2088 1a8e4e94e8bed4e2c2879ad006c908f3 289 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 4 259 1.0E-35 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 Trebr_2088 1a8e4e94e8bed4e2c2879ad006c908f3 289 Gene3D G3DSA:3.20.20.140 1 276 3.2E-64 T 13-10-2018 Trebr_2088 1a8e4e94e8bed4e2c2879ad006c908f3 289 Pfam PF02811 PHP domain 5 83 3.3E-8 T 13-10-2018 IPR004013 PHP domain GO:0003824 Trebr_2088 1a8e4e94e8bed4e2c2879ad006c908f3 289 SUPERFAMILY SSF89550 3 274 2.75E-40 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 SUPERFAMILY SSF55120 64 243 6.4E-37 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 107 121 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 SMART SM00363 4 65 1.1E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 Gene3D G3DSA:3.30.70.580 65 242 1.4E-50 T 13-10-2018 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 Pfam PF00849 RNA pseudouridylate synthase 65 208 3.7E-14 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 Gene3D G3DSA:3.10.290.10 1 62 5.5E-16 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 Gene3D G3DSA:3.30.70.1560 136 225 1.4E-50 T 13-10-2018 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 SUPERFAMILY SSF55174 4 95 1.96E-16 T 13-10-2018 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 Pfam PF01479 S4 domain 4 47 7.7E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_1710 e41bd41646f9ae62a0b020bd5256d440 249 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 69 239 1.8E-37 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Trebr_0423 f18e094873ef212d408496b6179c3bf7 359 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 149 342 6.9E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0423 f18e094873ef212d408496b6179c3bf7 359 SUPERFAMILY SSF161098 118 342 1.57E-46 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0423 f18e094873ef212d408496b6179c3bf7 359 Gene3D G3DSA:1.10.3720.10 114 354 9.8E-54 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1897 0ad0ecb842ce86373e3439c62abd0fec 445 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 401 6.3E-66 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1897 0ad0ecb842ce86373e3439c62abd0fec 445 PIRSF PIRSF006603 1 445 2.7E-101 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1897 0ad0ecb842ce86373e3439c62abd0fec 445 Pfam PF01554 MatE 244 401 1.5E-23 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1897 0ad0ecb842ce86373e3439c62abd0fec 445 Pfam PF01554 MatE 21 182 1.2E-34 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2391 7b17437cf072a438b5e2d9fa54c78a37 112 Gene3D G3DSA:3.30.70.120 1 106 4.7E-35 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Trebr_2391 7b17437cf072a438b5e2d9fa54c78a37 112 SUPERFAMILY SSF54913 1 110 6.67E-10 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Trebr_2391 7b17437cf072a438b5e2d9fa54c78a37 112 Pfam PF06153 Cyclic-di-AMP receptor 1 111 1.1E-29 T 13-10-2018 IPR010375 Cyclic-di-AMP receptor Trebr_0181 da4fcf275c9597eaf12bf54fe22c0ad8 395 Gene3D G3DSA:1.20.1530.20 1 389 2.8E-29 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily Trebr_0181 da4fcf275c9597eaf12bf54fe22c0ad8 395 Pfam PF00999 Sodium/hydrogen exchanger family 8 376 2.6E-37 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Trebr_1200 8adb556b60b73c61685ac8a4c110e162 189 PIRSF PIRSF016661 1 185 1.5E-37 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 Trebr_1200 8adb556b60b73c61685ac8a4c110e162 189 Pfam PF02632 BioY family 29 177 4.9E-36 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 Trebr_1200 8adb556b60b73c61685ac8a4c110e162 189 Gene3D G3DSA:1.10.1760.20 1 183 9.0E-47 T 13-10-2018 Trebr_1394 abfe2715b5e511e63d1bd0b1c1311838 69 SUPERFAMILY SSF55008 1 67 4.19E-8 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Trebr_1394 abfe2715b5e511e63d1bd0b1c1311838 69 Gene3D G3DSA:3.30.70.100 1 68 6.0E-8 T 13-10-2018 Trebr_1394 abfe2715b5e511e63d1bd0b1c1311838 69 Pfam PF00403 Heavy-metal-associated domain 5 66 9.1E-6 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Trebr_2304 c59a6963b282e6439e4f3aa191a9caa6 226 PIRSF PIRSF002155 1 223 6.3E-75 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2304 c59a6963b282e6439e4f3aa191a9caa6 226 Pfam PF00687 Ribosomal protein L1p/L10e family 32 216 3.6E-46 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Trebr_2304 c59a6963b282e6439e4f3aa191a9caa6 226 ProSitePatterns PS01199 Ribosomal protein L1 signature. 117 135 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2304 c59a6963b282e6439e4f3aa191a9caa6 226 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 2 223 3.8E-93 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Trebr_2304 c59a6963b282e6439e4f3aa191a9caa6 226 SUPERFAMILY SSF56808 5 222 1.16E-72 T 13-10-2018 IPR023674 Ribosomal protein L1-like Trebr_2304 c59a6963b282e6439e4f3aa191a9caa6 226 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 1 225 36.407 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Trebr_2304 c59a6963b282e6439e4f3aa191a9caa6 226 Gene3D G3DSA:3.40.50.790 64 155 5.8E-74 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Trebr_2304 c59a6963b282e6439e4f3aa191a9caa6 226 Gene3D G3DSA:3.30.190.20 20 220 5.8E-74 T 13-10-2018 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 Gene3D G3DSA:3.40.50.800 346 447 1.0E-33 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 5 443 50.762 T 13-10-2018 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 7 228 4.3E-88 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 Pfam PF03129 Anticodon binding domain 352 439 7.4E-23 T 13-10-2018 IPR004154 Anticodon-binding Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 PRINTS PR01043 Glycyl-tRNA synthetase signature 147 164 4.2E-52 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 PRINTS PR01043 Glycyl-tRNA synthetase signature 179 196 4.2E-52 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 PRINTS PR01043 Glycyl-tRNA synthetase signature 196 206 4.2E-52 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 PRINTS PR01043 Glycyl-tRNA synthetase signature 126 138 4.2E-52 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 PRINTS PR01043 Glycyl-tRNA synthetase signature 27 41 4.2E-52 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 PRINTS PR01043 Glycyl-tRNA synthetase signature 302 314 4.2E-52 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 PRINTS PR01043 Glycyl-tRNA synthetase signature 388 407 4.2E-52 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 146 318 8.7E-10 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 SUPERFAMILY SSF55681 7 354 1.05E-112 T 13-10-2018 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 SUPERFAMILY SSF52954 338 444 1.19E-34 T 13-10-2018 Trebr_0782 42efb106a6bff903c7e87c3f4f6374e6 448 Gene3D G3DSA:3.30.930.10 8 345 2.7E-131 T 13-10-2018 Trebr_1051 a813a048f414b9ab0cf849ac8867fc76 276 Gene3D G3DSA:3.40.50.300 21 272 9.8E-71 T 13-10-2018 Trebr_1051 a813a048f414b9ab0cf849ac8867fc76 276 Hamap MF_02040 Iron-sulfur cluster carrier protein. 23 272 33.1 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein Trebr_1051 a813a048f414b9ab0cf849ac8867fc76 276 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 31 259 4.4E-86 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Trebr_1051 a813a048f414b9ab0cf849ac8867fc76 276 SUPERFAMILY SSF52540 21 252 3.78E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0637 943cf7473257d5147310066297e49ab0 201 Gene3D G3DSA:3.40.50.2300 73 201 1.7E-27 T 13-10-2018 Trebr_0637 943cf7473257d5147310066297e49ab0 201 Pfam PF12728 Helix-turn-helix domain 11 60 3.0E-8 T 13-10-2018 Trebr_0637 943cf7473257d5147310066297e49ab0 201 Pfam PF00072 Response regulator receiver domain 82 194 1.8E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0637 943cf7473257d5147310066297e49ab0 201 SUPERFAMILY SSF52172 80 200 1.38E-26 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0637 943cf7473257d5147310066297e49ab0 201 Gene3D G3DSA:1.10.1660.10 12 65 5.1E-5 T 13-10-2018 Trebr_0637 943cf7473257d5147310066297e49ab0 201 SMART SM00448 80 195 1.3E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0637 943cf7473257d5147310066297e49ab0 201 SUPERFAMILY SSF46955 14 64 1.69E-5 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily Trebr_0977 e883f0292cbbd1878485eaad011af9c8 210 Pfam PF01914 MarC family integral membrane protein 4 202 1.0E-47 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Trebr_0977 e883f0292cbbd1878485eaad011af9c8 210 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 3 201 2.1E-43 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Trebr_0816 a56ad6915f64ca52cd9f66b5c97bfe71 308 Gene3D G3DSA:3.90.550.10 1 183 2.7E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0816 a56ad6915f64ca52cd9f66b5c97bfe71 308 SUPERFAMILY SSF53448 5 132 5.25E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0816 a56ad6915f64ca52cd9f66b5c97bfe71 308 Pfam PF00535 Glycosyl transferase family 2 8 116 1.4E-15 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_1945 5de1f6c3e5919cdecc0e5a1b66e68a42 217 Gene3D G3DSA:1.20.58.1290 75 170 2.7E-20 T 13-10-2018 Trebr_1945 5de1f6c3e5919cdecc0e5a1b66e68a42 217 Pfam PF02559 CarD-like/TRCF domain 14 121 8.7E-14 T 13-10-2018 IPR003711 CarD-like/TRCF domain Trebr_1945 5de1f6c3e5919cdecc0e5a1b66e68a42 217 Gene3D G3DSA:2.30.30.840 7 74 2.8E-23 T 13-10-2018 Trebr_1945 5de1f6c3e5919cdecc0e5a1b66e68a42 217 SMART SM01058 13 123 1.8E-20 T 13-10-2018 IPR003711 CarD-like/TRCF domain Trebr_1945 5de1f6c3e5919cdecc0e5a1b66e68a42 217 SUPERFAMILY SSF141259 11 76 1.44E-11 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily Trebr_1285 7bca46eaa99f5bb61046c18034be2e4d 450 Pfam PF05559 Protein of unknown function (DUF763) 9 378 1.3E-129 T 13-10-2018 IPR008482 Protein of unknown function DUF763 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 270 288 8.5E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 120 140 8.5E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 293 313 8.5E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 84 98 8.5E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 251 268 8.5E-28 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 Gene3D G3DSA:3.40.50.150 64 333 2.6E-60 T 13-10-2018 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 88 94 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 Pfam PF01555 DNA methylase 86 307 1.2E-37 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 Trebr_0356 c964540ef2d71a2965b05481d24dd589 337 SUPERFAMILY SSF53335 65 313 1.32E-53 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0045 82be25236678567d818c73960ede5b9b 276 SUPERFAMILY SSF161098 10 275 3.53E-62 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0045 82be25236678567d818c73960ede5b9b 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 263 1.5E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0045 82be25236678567d818c73960ede5b9b 276 Gene3D G3DSA:1.10.3720.10 2 267 2.6E-56 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1089 a1d5e83ef3bcb1ee224a43b7059e333e 269 Gene3D G3DSA:2.40.50.140 1 75 1.7E-6 T 13-10-2018 Trebr_1089 a1d5e83ef3bcb1ee224a43b7059e333e 269 SUPERFAMILY SSF50249 3 73 7.88E-9 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1089 a1d5e83ef3bcb1ee224a43b7059e333e 269 TIGRFAM TIGR00613 reco: DNA repair protein RecO 8 163 1.3E-13 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Trebr_1089 a1d5e83ef3bcb1ee224a43b7059e333e 269 Pfam PF02565 Recombination protein O C terminal 84 262 3.5E-13 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Trebr_1089 a1d5e83ef3bcb1ee224a43b7059e333e 269 Hamap MF_00201 DNA repair protein RecO [recO]. 3 268 15.399 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Trebr_1089 a1d5e83ef3bcb1ee224a43b7059e333e 269 SUPERFAMILY SSF57863 83 252 1.15E-16 T 13-10-2018 IPR037278 ARFGAP/RecO-like zinc finger Trebr_1089 a1d5e83ef3bcb1ee224a43b7059e333e 269 Pfam PF11967 Recombination protein O N terminal 5 65 4.8E-8 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal Trebr_0060 0b9232fbc4e219f1a21fb3b7a2223ae0 164 Pfam PF03692 Putative zinc- or iron-chelating domain 50 132 2.6E-11 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Trebr_0125 bf60929c124d60a0440695ff3352e190 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Trebr_0125 bf60929c124d60a0440695ff3352e190 382 SUPERFAMILY SSF56796 5 380 1.07E-115 T 13-10-2018 Trebr_0125 bf60929c124d60a0440695ff3352e190 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 374 2.6E-113 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Trebr_0125 bf60929c124d60a0440695ff3352e190 382 Gene3D G3DSA:1.20.1090.10 187 381 4.7E-62 T 13-10-2018 Trebr_0125 bf60929c124d60a0440695ff3352e190 382 Gene3D G3DSA:3.40.50.1970 1 185 4.5E-57 T 13-10-2018 Trebr_0125 bf60929c124d60a0440695ff3352e190 382 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 3 378 8.0E-186 T 13-10-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 Trebr_0125 bf60929c124d60a0440695ff3352e190 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Trebr_1777 7a768e88d09e75b03e4c8f8c586c72a6 215 SUPERFAMILY SSF52374 3 212 6.26E-42 T 13-10-2018 Trebr_1777 7a768e88d09e75b03e4c8f8c586c72a6 215 Gene3D G3DSA:3.40.50.620 2 213 2.7E-50 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1777 7a768e88d09e75b03e4c8f8c586c72a6 215 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 1 211 27.969 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Trebr_1777 7a768e88d09e75b03e4c8f8c586c72a6 215 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 5 210 3.0E-41 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Trebr_1777 7a768e88d09e75b03e4c8f8c586c72a6 215 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 67 2.9E-7 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Trebr_1777 7a768e88d09e75b03e4c8f8c586c72a6 215 Pfam PF01467 Cytidylyltransferase-like 5 172 8.4E-22 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Trebr_0712 4e922a1e269dd1196be0eb91ebcc9b21 495 Gene3D G3DSA:3.30.565.10 339 491 5.8E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0712 4e922a1e269dd1196be0eb91ebcc9b21 495 Pfam PF00672 HAMP domain 207 254 8.8E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0712 4e922a1e269dd1196be0eb91ebcc9b21 495 SUPERFAMILY SSF158472 207 256 6.8E-7 T 13-10-2018 Trebr_0712 4e922a1e269dd1196be0eb91ebcc9b21 495 SMART SM00304 206 259 4.4E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0712 4e922a1e269dd1196be0eb91ebcc9b21 495 Gene3D G3DSA:1.20.1480.50 165 265 1.4E-9 T 13-10-2018 Trebr_0712 4e922a1e269dd1196be0eb91ebcc9b21 495 Pfam PF06580 Histidine kinase 289 366 1.8E-23 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Trebr_0712 4e922a1e269dd1196be0eb91ebcc9b21 495 SUPERFAMILY SSF55874 342 488 5.11E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_1981 91e96e599710108608aafe1b785d65df 230 Pfam PF08239 Bacterial SH3 domain 165 226 4.2E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type Trebr_1981 91e96e599710108608aafe1b785d65df 230 Gene3D G3DSA:2.30.30.40 159 230 5.4E-11 T 13-10-2018 Trebr_1415 bbcccf8f58529b119dd8dd35991fa55f 61 Pfam PF01783 Ribosomal L32p protein family 2 57 3.9E-25 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1415 bbcccf8f58529b119dd8dd35991fa55f 61 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 56 1.7E-27 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_1415 bbcccf8f58529b119dd8dd35991fa55f 61 SUPERFAMILY SSF57829 1 56 3.24E-20 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Trebr_1415 bbcccf8f58529b119dd8dd35991fa55f 61 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 56 19.475 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2012 506418d72a00521d377800ecd6a6dbb7 449 SUPERFAMILY SSF53850 26 443 1.54E-27 T 13-10-2018 Trebr_2012 506418d72a00521d377800ecd6a6dbb7 449 Pfam PF13416 Bacterial extracellular solute-binding protein 46 381 2.4E-31 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2012 506418d72a00521d377800ecd6a6dbb7 449 Gene3D G3DSA:3.40.190.10 45 383 1.6E-28 T 13-10-2018 Trebr_2012 506418d72a00521d377800ecd6a6dbb7 449 Gene3D G3DSA:3.40.190.10 135 428 1.6E-28 T 13-10-2018 Trebr_0351 40c6bd939ce200f94960d1f8cc4573cc 320 SMART SM00934 18 285 1.7E-27 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0351 40c6bd939ce200f94960d1f8cc4573cc 320 SUPERFAMILY SSF51366 13 287 9.42E-55 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Trebr_0351 40c6bd939ce200f94960d1f8cc4573cc 320 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 7 284 2.2E-61 T 13-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0351 40c6bd939ce200f94960d1f8cc4573cc 320 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 19 282 6.9E-24 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0351 40c6bd939ce200f94960d1f8cc4573cc 320 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 101 114 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_0351 40c6bd939ce200f94960d1f8cc4573cc 320 Gene3D G3DSA:3.20.20.70 2 312 1.9E-81 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0351 40c6bd939ce200f94960d1f8cc4573cc 320 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 4 313 31.63 T 13-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Trebr_0289 3fe4746fe9f299822b92835d6c11a76d 386 Pfam PF00534 Glycosyl transferases group 1 196 360 3.6E-18 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_0289 3fe4746fe9f299822b92835d6c11a76d 386 Gene3D G3DSA:3.40.50.2000 182 361 3.7E-24 T 13-10-2018 Trebr_0289 3fe4746fe9f299822b92835d6c11a76d 386 SUPERFAMILY SSF53756 3 380 2.86E-32 T 13-10-2018 Trebr_0879 042879652c7ee712b2eda04a70c3ff4e 152 SUPERFAMILY SSF47188 11 141 8.76E-29 T 13-10-2018 IPR035938 Hemerythrin-like superfamily Trebr_0879 042879652c7ee712b2eda04a70c3ff4e 152 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 13 141 1.7E-31 T 13-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Trebr_0879 042879652c7ee712b2eda04a70c3ff4e 152 Pfam PF01814 Hemerythrin HHE cation binding domain 22 140 1.8E-12 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Trebr_0879 042879652c7ee712b2eda04a70c3ff4e 152 ProSitePatterns PS00550 Hemerythrin family signature. 72 95 - T 13-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Trebr_0879 042879652c7ee712b2eda04a70c3ff4e 152 Gene3D G3DSA:1.20.120.50 10 144 1.4E-33 T 13-10-2018 IPR035938 Hemerythrin-like superfamily Trebr_0175 f87d163bb883d96e3cb4a224e8a8f3df 279 Pfam PF06541 Putative ABC-transporter type IV 8 162 6.3E-47 T 13-10-2018 IPR010540 Putative ABC-transporter type IV CmpB/TMEM229 Trebr_0874 c05e447e1144bad6dad0b0a285fc432f 481 SUPERFAMILY SSF56954 6 460 3.27E-7 T 13-10-2018 Trebr_0874 c05e447e1144bad6dad0b0a285fc432f 481 Gene3D G3DSA:1.20.1600.10 6 242 3.5E-8 T 13-10-2018 Trebr_1316 2f66a82c084cea82835c15c384719115 450 Gene3D G3DSA:3.40.50.300 219 449 2.1E-71 T 13-10-2018 Trebr_1316 2f66a82c084cea82835c15c384719115 450 Gene3D G3DSA:3.30.450.90 81 212 1.6E-39 T 13-10-2018 Trebr_1316 2f66a82c084cea82835c15c384719115 450 SMART SM00382 240 382 2.1E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1316 2f66a82c084cea82835c15c384719115 450 Pfam PF00437 Type II/IV secretion system protein 120 377 7.9E-72 T 13-10-2018 IPR001482 Type II/IV secretion system protein Trebr_1316 2f66a82c084cea82835c15c384719115 450 SUPERFAMILY SSF52540 97 442 8.76E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1316 2f66a82c084cea82835c15c384719115 450 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 307 321 - T 13-10-2018 IPR001482 Type II/IV secretion system protein Trebr_1316 2f66a82c084cea82835c15c384719115 450 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 6 72 4.4E-7 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal Trebr_1639 7afefca47b108d252f2621d63b566b65 385 Gene3D G3DSA:3.40.50.11820 23 373 1.8E-72 T 13-10-2018 Trebr_1639 7afefca47b108d252f2621d63b566b65 385 SUPERFAMILY SSF53756 38 381 1.37E-10 T 13-10-2018 Trebr_1639 7afefca47b108d252f2621d63b566b65 385 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 18 379 1.6E-57 T 13-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 Trebr_1639 7afefca47b108d252f2621d63b566b65 385 Gene3D G3DSA:3.40.50.12580 186 367 1.8E-72 T 13-10-2018 Trebr_0828 aacf5f3bfbf7140b372adb87b2365bec 214 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 13 200 1.7E-22 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain Trebr_0828 aacf5f3bfbf7140b372adb87b2365bec 214 Gene3D G3DSA:3.40.50.1110 1 213 6.0E-63 T 13-10-2018 IPR036514 SGNH hydrolase superfamily Trebr_0828 aacf5f3bfbf7140b372adb87b2365bec 214 SUPERFAMILY SSF52266 6 211 2.33E-39 T 13-10-2018 Trebr_0339 884699a45d8c7d8036cf80f53350bd2c 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 336 5.7E-17 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_1431 c97b7acdb087172f99f1b5bc8b60a818 169 Hamap MF_00984 Single-stranded DNA-binding protein. 4 109 30.097 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Trebr_1431 c97b7acdb087172f99f1b5bc8b60a818 169 Gene3D G3DSA:2.40.50.140 2 143 2.7E-36 T 13-10-2018 Trebr_1431 c97b7acdb087172f99f1b5bc8b60a818 169 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 169 7.2E-41 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Trebr_1431 c97b7acdb087172f99f1b5bc8b60a818 169 SUPERFAMILY SSF50249 4 169 7.54E-43 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_1431 c97b7acdb087172f99f1b5bc8b60a818 169 Pfam PF00436 Single-strand binding protein family 4 105 4.7E-27 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Trebr_1431 c97b7acdb087172f99f1b5bc8b60a818 169 PIRSF PIRSF002070 1 151 2.3E-32 T 13-10-2018 Trebr_2480 a9642451cd5640dde46ee50bc889e663 350 SUPERFAMILY SSF53067 100 298 4.47E-13 T 13-10-2018 Trebr_2480 a9642451cd5640dde46ee50bc889e663 350 Gene3D G3DSA:1.10.10.10 2 76 6.6E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2480 a9642451cd5640dde46ee50bc889e663 350 Pfam PF00480 ROK family 97 241 1.5E-7 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Trebr_2480 a9642451cd5640dde46ee50bc889e663 350 Gene3D G3DSA:3.30.420.40 126 197 1.8E-14 T 13-10-2018 Trebr_2480 a9642451cd5640dde46ee50bc889e663 350 SUPERFAMILY SSF46785 11 73 5.55E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2480 a9642451cd5640dde46ee50bc889e663 350 Gene3D G3DSA:3.30.420.40 198 242 1.8E-14 T 13-10-2018 Trebr_0195 1bdb05d4d6a2d2f4f488356d90548043 148 SUPERFAMILY SSF103039 6 146 1.16E-21 T 13-10-2018 IPR028976 CheC-like superfamily Trebr_0195 1bdb05d4d6a2d2f4f488356d90548043 148 Pfam PF13690 Chemotaxis phosphatase CheX 42 134 9.0E-17 T 13-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain Trebr_0195 1bdb05d4d6a2d2f4f488356d90548043 148 Gene3D G3DSA:3.40.1550.10 5 148 6.3E-24 T 13-10-2018 IPR028976 CheC-like superfamily Trebr_2436 1f326926fa8a900ab0143a5c4e0370ac 397 Pfam PF01170 Putative RNA methylase family UPF0020 164 380 3.9E-37 T 13-10-2018 IPR000241 Putative RNA methylase domain Trebr_2436 1f326926fa8a900ab0143a5c4e0370ac 397 SUPERFAMILY SSF53335 148 387 2.78E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_2436 1f326926fa8a900ab0143a5c4e0370ac 397 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 315 321 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_2436 1f326926fa8a900ab0143a5c4e0370ac 397 Gene3D G3DSA:3.30.2130.30 5 247 6.8E-104 T 13-10-2018 Trebr_2436 1f326926fa8a900ab0143a5c4e0370ac 397 Gene3D G3DSA:3.40.50.150 162 380 6.8E-104 T 13-10-2018 Trebr_1183 937a307dfb275bec7b3b63253f1f37df 210 SUPERFAMILY SSF160527 102 195 2.35E-6 T 13-10-2018 Trebr_2352 6fc3692eafa4df202ba648a22e8534f9 302 Gene3D G3DSA:1.10.3720.10 14 293 3.8E-56 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2352 6fc3692eafa4df202ba648a22e8534f9 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 295 5.8E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2352 6fc3692eafa4df202ba648a22e8534f9 302 SUPERFAMILY SSF161098 22 302 3.08E-61 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0902 ff6b2f0a43005a202f2afd63f71b9cc0 81 Gene3D G3DSA:3.30.1320.10 1 81 1.2E-33 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0902 ff6b2f0a43005a202f2afd63f71b9cc0 81 Pfam PF00886 Ribosomal protein S16 8 67 6.3E-27 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0902 ff6b2f0a43005a202f2afd63f71b9cc0 81 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 77 24.237 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0902 ff6b2f0a43005a202f2afd63f71b9cc0 81 SUPERFAMILY SSF54565 2 79 3.27E-31 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0902 ff6b2f0a43005a202f2afd63f71b9cc0 81 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.8E-32 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_0137 74f5772e44f50a4ca168d1232c1562c0 335 Pfam PF04015 Domain of unknown function (DUF362) 80 292 1.1E-34 T 13-10-2018 IPR007160 Domain of unknown function DUF362 Trebr_1503 2c334dbf0c84e33bb9cb93d0647bfbdf 261 Gene3D G3DSA:3.40.50.850 4 254 3.1E-44 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Trebr_1503 2c334dbf0c84e33bb9cb93d0647bfbdf 261 SUPERFAMILY SSF52499 3 236 1.7E-12 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 Pfam PF14559 Tetratricopeptide repeat 36 81 1.0E-5 T 13-10-2018 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 Gene3D G3DSA:1.25.40.10 16 210 3.7E-26 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 SMART SM00028 131 164 44.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 SMART SM00028 25 58 100.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 SMART SM00028 165 198 0.31 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 SMART SM00028 93 126 130.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 SUPERFAMILY SSF48452 23 202 3.8E-22 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 Pfam PF07719 Tetratricopeptide repeat 166 197 2.0E-5 T 13-10-2018 IPR013105 Tetratricopeptide repeat 2 Trebr_1744 b8cd663d44b4e38705d89748e585f4e0 212 Pfam PF13181 Tetratricopeptide repeat 133 162 0.068 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1911 fbf61268d613b41be7c79be8b9b3d47d 471 Gene3D G3DSA:3.20.20.300 59 415 2.2E-75 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 Trebr_1911 fbf61268d613b41be7c79be8b9b3d47d 471 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 76 395 4.8E-52 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Trebr_1911 fbf61268d613b41be7c79be8b9b3d47d 471 SUPERFAMILY SSF51445 65 404 1.05E-55 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_1887 9574f4e5bdf831e174619b54c2a4946f 192 Pfam PF10135 Rod binding protein 141 190 8.1E-13 T 13-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal Trebr_1215 f33a58c3d0761f4a9e293fb4afbc972c 69 Gene3D G3DSA:2.30.30.90 1 69 5.6E-14 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain Trebr_1215 f33a58c3d0761f4a9e293fb4afbc972c 69 SMART SM00899 1 69 2.1E-7 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Trebr_1215 f33a58c3d0761f4a9e293fb4afbc972c 69 Pfam PF04023 FeoA domain 1 69 4.9E-15 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Trebr_1215 f33a58c3d0761f4a9e293fb4afbc972c 69 SUPERFAMILY SSF50037 3 69 5.04E-10 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal Trebr_0447 224dd4a1c47881115ef9ddca7ddc9979 127 SUPERFAMILY SSF47413 2 67 1.19E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_0447 224dd4a1c47881115ef9ddca7ddc9979 127 SMART SM00530 5 61 2.5E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0447 224dd4a1c47881115ef9ddca7ddc9979 127 Gene3D G3DSA:1.10.260.40 1 69 3.0E-9 T 13-10-2018 Trebr_0447 224dd4a1c47881115ef9ddca7ddc9979 127 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 17 66 1.5E-6 T 13-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 Trebr_1907 6ebdbcdba2bc82343eae8457a379a47e 101 Pfam PF00216 Bacterial DNA-binding protein 4 93 3.2E-26 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Trebr_1907 6ebdbcdba2bc82343eae8457a379a47e 101 SMART SM00411 4 94 6.1E-30 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Trebr_1907 6ebdbcdba2bc82343eae8457a379a47e 101 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 5.1E-12 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Trebr_1907 6ebdbcdba2bc82343eae8457a379a47e 101 PRINTS PR01727 Prokaryotic integration host factor signature 78 92 5.1E-12 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Trebr_1907 6ebdbcdba2bc82343eae8457a379a47e 101 PRINTS PR01727 Prokaryotic integration host factor signature 62 75 5.1E-12 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Trebr_1907 6ebdbcdba2bc82343eae8457a379a47e 101 SUPERFAMILY SSF47729 4 95 1.77E-23 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Trebr_1907 6ebdbcdba2bc82343eae8457a379a47e 101 Gene3D G3DSA:4.10.520.10 1 96 3.0E-29 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Trebr_1907 6ebdbcdba2bc82343eae8457a379a47e 101 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 49 69 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Trebr_0100 f782d830b6b6228433b33c7133a45d72 156 Gene3D G3DSA:2.30.30.40 7 139 8.0E-38 T 13-10-2018 Trebr_0100 f782d830b6b6228433b33c7133a45d72 156 Gene3D G3DSA:2.40.50.180 23 140 8.0E-38 T 13-10-2018 Trebr_0100 f782d830b6b6228433b33c7133a45d72 156 SMART SM00260 3 145 8.4E-38 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0100 f782d830b6b6228433b33c7133a45d72 156 Pfam PF01584 CheW-like domain 4 148 3.1E-32 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Trebr_0100 f782d830b6b6228433b33c7133a45d72 156 SUPERFAMILY SSF50341 4 149 8.89E-32 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Trebr_2249 f0bf9adb1fe1369ecefd926c20ea9e9d 244 SUPERFAMILY SSF51735 5 242 1.0E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2249 f0bf9adb1fe1369ecefd926c20ea9e9d 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 242 3.2E-27 T 13-10-2018 Trebr_2249 f0bf9adb1fe1369ecefd926c20ea9e9d 244 Gene3D G3DSA:3.40.50.720 3 243 4.1E-43 T 13-10-2018 Trebr_2249 f0bf9adb1fe1369ecefd926c20ea9e9d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 9.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_2249 f0bf9adb1fe1369ecefd926c20ea9e9d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 9.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_2249 f0bf9adb1fe1369ecefd926c20ea9e9d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 9.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_2249 f0bf9adb1fe1369ecefd926c20ea9e9d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 9.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_2249 f0bf9adb1fe1369ecefd926c20ea9e9d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 9.9E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_2402 9e06c31b53832f08f64437289afb728a 253 Pfam PF06541 Putative ABC-transporter type IV 13 182 1.1E-36 T 13-10-2018 IPR010540 Putative ABC-transporter type IV CmpB/TMEM229 Trebr_1366 d45d9a147e010c59ca1cf086c73652b2 313 SUPERFAMILY SSF56281 1 293 2.36E-40 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_1366 d45d9a147e010c59ca1cf086c73652b2 313 Gene3D G3DSA:3.60.15.10 52 309 4.1E-39 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_1366 d45d9a147e010c59ca1cf086c73652b2 313 Pfam PF12706 Beta-lactamase superfamily domain 76 272 5.8E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_1366 d45d9a147e010c59ca1cf086c73652b2 313 SMART SM00849 61 249 0.0096 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_1306 8cc06efe031d51c9d3d1fbab08862937 378 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1306 8cc06efe031d51c9d3d1fbab08862937 378 Pfam PF00005 ABC transporter 26 167 2.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1306 8cc06efe031d51c9d3d1fbab08862937 378 Gene3D G3DSA:3.40.50.300 2 244 4.3E-79 T 13-10-2018 Trebr_1306 8cc06efe031d51c9d3d1fbab08862937 378 SUPERFAMILY SSF52540 10 246 3.22E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1306 8cc06efe031d51c9d3d1fbab08862937 378 SMART SM00382 34 217 1.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1846 6d6d4913bd546c52665c14be32cb1ce4 278 Gene3D G3DSA:1.25.40.10 21 89 9.1E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1846 6d6d4913bd546c52665c14be32cb1ce4 278 Pfam PF13432 Tetratricopeptide repeat 28 84 5.1E-8 T 13-10-2018 Trebr_1846 6d6d4913bd546c52665c14be32cb1ce4 278 SUPERFAMILY SSF48452 25 190 2.28E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1846 6d6d4913bd546c52665c14be32cb1ce4 278 SMART SM00028 90 123 36.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1846 6d6d4913bd546c52665c14be32cb1ce4 278 SMART SM00028 21 54 230.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1846 6d6d4913bd546c52665c14be32cb1ce4 278 SMART SM00028 124 157 8.4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1846 6d6d4913bd546c52665c14be32cb1ce4 278 SMART SM00028 55 88 0.02 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1846 6d6d4913bd546c52665c14be32cb1ce4 278 Gene3D G3DSA:1.25.40.10 90 211 3.9E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0877 151fd274a4b8e823230b5c019aba724b 216 Pfam PF03968 OstA-like protein 97 193 3.3E-8 T 13-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal Trebr_0877 151fd274a4b8e823230b5c019aba724b 216 Gene3D G3DSA:2.60.450.10 90 214 4.5E-7 T 13-10-2018 Trebr_0615 68471fcaf3cbf8c2a6cec0ca5d42cf51 230 Gene3D G3DSA:1.10.3720.10 1 229 5.4E-64 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0615 68471fcaf3cbf8c2a6cec0ca5d42cf51 230 SUPERFAMILY SSF161098 10 212 4.71E-48 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0615 68471fcaf3cbf8c2a6cec0ca5d42cf51 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 227 4.0E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0615 68471fcaf3cbf8c2a6cec0ca5d42cf51 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 90 1.4E-21 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Trebr_1042 43db8e57ac22a20efb72c87e108d4c7b 199 Pfam PF06161 Protein of unknown function (DUF975) 4 103 1.1E-11 T 13-10-2018 IPR010380 Protein of unknown function DUF975 Trebr_1042 43db8e57ac22a20efb72c87e108d4c7b 199 Pfam PF06161 Protein of unknown function (DUF975) 99 186 1.2E-25 T 13-10-2018 IPR010380 Protein of unknown function DUF975 Trebr_2139 1cc29438dab8615bced7af0bf32a9151 138 SUPERFAMILY SSF110916 11 98 2.22E-13 T 13-10-2018 Trebr_2139 1cc29438dab8615bced7af0bf32a9151 138 Pfam PF00472 RF-1 domain 15 132 2.1E-16 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Trebr_2139 1cc29438dab8615bced7af0bf32a9151 138 Gene3D G3DSA:3.30.160.20 2 136 1.6E-32 T 13-10-2018 Trebr_2139 1cc29438dab8615bced7af0bf32a9151 138 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 20 36 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Trebr_2053 3bd7b1d7c6cadf6fae9a7a75703fdcdc 337 Gene3D G3DSA:3.90.550.10 4 196 4.1E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2053 3bd7b1d7c6cadf6fae9a7a75703fdcdc 337 SUPERFAMILY SSF53448 6 220 1.82E-45 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2053 3bd7b1d7c6cadf6fae9a7a75703fdcdc 337 Pfam PF00535 Glycosyl transferase family 2 8 116 7.2E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_0498 025a783aaf2bbb4d6c135f24c2090e87 146 Gene3D G3DSA:1.20.120.340 1 130 9.2E-43 T 13-10-2018 Trebr_0498 025a783aaf2bbb4d6c135f24c2090e87 146 SUPERFAMILY SSF101116 5 126 1.09E-31 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 Trebr_0498 025a783aaf2bbb4d6c135f24c2090e87 146 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 126 1.6E-25 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Trebr_0498 025a783aaf2bbb4d6c135f24c2090e87 146 Pfam PF02561 Flagellar protein FliS 7 125 2.4E-36 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Trebr_0498 025a783aaf2bbb4d6c135f24c2090e87 146 PIRSF PIRSF039090 1 136 1.1E-28 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Trebr_0783 b40682541440a7318119ddb114ea28de 274 Pfam PF03724 META domain 36 154 2.3E-15 T 13-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ Trebr_0783 b40682541440a7318119ddb114ea28de 274 Pfam PF03724 META domain 157 270 2.2E-18 T 13-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ Trebr_0783 b40682541440a7318119ddb114ea28de 274 Gene3D G3DSA:2.40.128.270 34 155 2.0E-14 T 13-10-2018 IPR038670 HslJ-like superfamily Trebr_0783 b40682541440a7318119ddb114ea28de 274 Gene3D G3DSA:2.40.128.270 156 273 5.6E-18 T 13-10-2018 IPR038670 HslJ-like superfamily Trebr_0025 1b2132fc1d96c26c9e9a6c337da9f47c 924 Pfam PF04773 FecR protein 85 176 4.9E-5 T 13-10-2018 IPR006860 FecR protein Trebr_0025 1b2132fc1d96c26c9e9a6c337da9f47c 924 Gene3D G3DSA:2.60.40.10 799 909 2.5E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0025 1b2132fc1d96c26c9e9a6c337da9f47c 924 Gene3D G3DSA:2.60.40.10 507 598 4.0E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0025 1b2132fc1d96c26c9e9a6c337da9f47c 924 Gene3D G3DSA:2.60.40.10 599 689 3.6E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0025 1b2132fc1d96c26c9e9a6c337da9f47c 924 Gene3D G3DSA:2.60.40.10 405 506 3.9E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0025 1b2132fc1d96c26c9e9a6c337da9f47c 924 Gene3D G3DSA:2.60.40.10 301 404 5.4E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0446 1f078016c9dc9c6d4bfc565ae2697651 535 Pfam PF01943 Polysaccharide biosynthesis protein 10 286 1.7E-8 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Trebr_1903 087d4d33949b429c5861492aff4e96cb 461 SUPERFAMILY SSF53383 25 457 1.82E-54 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1903 087d4d33949b429c5861492aff4e96cb 461 Pfam PF00155 Aminotransferase class I and II 194 448 1.2E-21 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Trebr_1903 087d4d33949b429c5861492aff4e96cb 461 Gene3D G3DSA:3.40.640.10 12 459 9.4E-150 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 SMART SM00567 E-Z type HEAT repeats 323 352 350.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 SMART SM00567 E-Z type HEAT repeats 196 225 820.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 SMART SM00567 E-Z type HEAT repeats 229 258 0.011 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 SMART SM00567 E-Z type HEAT repeats 291 320 290.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 SMART SM00567 E-Z type HEAT repeats 260 289 1100.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 SUPERFAMILY SSF48371 153 359 6.91E-25 T 13-10-2018 IPR016024 Armadillo-type fold Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 Pfam PF13646 HEAT repeats 216 301 8.4E-12 T 13-10-2018 Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 Gene3D G3DSA:1.25.10.10 52 278 1.3E-17 T 13-10-2018 IPR011989 Armadillo-like helical Trebr_1256 e557375a14a4929fe409ef20c53b92c3 468 Gene3D G3DSA:1.25.10.10 279 404 1.3E-10 T 13-10-2018 IPR011989 Armadillo-like helical Trebr_2152 14b62d89e16edc428e266c0247e2d0ca 403 Pfam PF07055 Enoyl reductase FAD binding domain 334 397 5.2E-26 T 13-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Trebr_2152 14b62d89e16edc428e266c0247e2d0ca 403 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 91 327 3.0E-105 T 13-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Trebr_2152 14b62d89e16edc428e266c0247e2d0ca 403 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 89 5.2E-34 T 13-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Trebr_2152 14b62d89e16edc428e266c0247e2d0ca 403 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 403 51.924 T 13-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Trebr_2152 14b62d89e16edc428e266c0247e2d0ca 403 Gene3D G3DSA:3.40.50.720 1 403 1.8E-162 T 13-10-2018 Trebr_1009 fe9dfee7d2abee83de4abc7c399de98d 174 Pfam PF00881 Nitroreductase family 8 62 2.5E-12 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Trebr_1009 fe9dfee7d2abee83de4abc7c399de98d 174 Pfam PF00881 Nitroreductase family 94 145 3.2E-6 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Trebr_1009 fe9dfee7d2abee83de4abc7c399de98d 174 SUPERFAMILY SSF55469 1 172 4.06E-40 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Trebr_1009 fe9dfee7d2abee83de4abc7c399de98d 174 Gene3D G3DSA:3.40.109.10 2 172 1.5E-39 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Trebr_0239 c65f02de5211b9dc5b89d08e93f09ebf 85 Gene3D G3DSA:3.30.1340.10 1 84 6.6E-25 T 13-10-2018 IPR035895 HPr-like superfamily Trebr_0239 c65f02de5211b9dc5b89d08e93f09ebf 85 Pfam PF00381 PTS HPr component phosphorylation site 4 79 1.7E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_0239 c65f02de5211b9dc5b89d08e93f09ebf 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.7E-14 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_0239 c65f02de5211b9dc5b89d08e93f09ebf 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.7E-14 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_0239 c65f02de5211b9dc5b89d08e93f09ebf 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.7E-14 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_0239 c65f02de5211b9dc5b89d08e93f09ebf 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 79 1.0E-23 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like Trebr_0239 c65f02de5211b9dc5b89d08e93f09ebf 85 SUPERFAMILY SSF55594 3 84 6.93E-21 T 13-10-2018 IPR035895 HPr-like superfamily Trebr_0895 9eeeb5f65f1576a04095ca030703925b 573 Pfam PF17239 Family of unknown function (DUF5312) 5 552 2.5E-215 T 13-10-2018 IPR035196 Protein of unknown function DUF5312 Trebr_0612 892e23cd7112c61e19107d923aabe591 239 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 28 206 7.3E-22 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Trebr_0612 892e23cd7112c61e19107d923aabe591 239 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 28 206 3.1E-25 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Trebr_0612 892e23cd7112c61e19107d923aabe591 239 SUPERFAMILY SSF56300 28 220 3.52E-33 T 13-10-2018 Trebr_0612 892e23cd7112c61e19107d923aabe591 239 Gene3D G3DSA:3.60.21.10 22 225 1.3E-35 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like Trebr_1610 cb418ce2ba0e4e2b184f6c9f70fb6efd 343 SUPERFAMILY SSF56281 8 335 2.42E-34 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_1610 cb418ce2ba0e4e2b184f6c9f70fb6efd 343 Pfam PF00753 Metallo-beta-lactamase superfamily 46 105 5.8E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_1610 cb418ce2ba0e4e2b184f6c9f70fb6efd 343 Gene3D G3DSA:3.60.15.10 35 287 4.0E-32 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_1610 cb418ce2ba0e4e2b184f6c9f70fb6efd 343 SMART SM00849 37 243 8.9E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_1866 099071b70ca95ea78dcb1330c19e534d 158 Gene3D G3DSA:1.25.40.10 28 158 1.7E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1866 099071b70ca95ea78dcb1330c19e534d 158 SUPERFAMILY SSF48452 34 121 1.0E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1866 099071b70ca95ea78dcb1330c19e534d 158 SMART SM00028 35 68 6.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1866 099071b70ca95ea78dcb1330c19e534d 158 SMART SM00028 73 106 5.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1682 a0f582f3c53e160bedb4a40e55ebe5b7 551 Gene3D G3DSA:1.10.3720.10 290 539 1.5E-29 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1682 a0f582f3c53e160bedb4a40e55ebe5b7 551 SUPERFAMILY SSF161098 297 545 2.34E-34 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1682 a0f582f3c53e160bedb4a40e55ebe5b7 551 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 373 539 1.1E-8 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1682 a0f582f3c53e160bedb4a40e55ebe5b7 551 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 268 1.7E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1682 a0f582f3c53e160bedb4a40e55ebe5b7 551 SUPERFAMILY SSF161098 14 268 4.32E-46 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1682 a0f582f3c53e160bedb4a40e55ebe5b7 551 Gene3D G3DSA:1.10.3720.10 8 277 1.0E-52 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1761 d472d388fe2a8af33a73f05be7759a43 294 Pfam PF00892 EamA-like transporter family 157 291 3.1E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Trebr_1761 d472d388fe2a8af33a73f05be7759a43 294 Pfam PF00892 EamA-like transporter family 2 136 2.4E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Trebr_1761 d472d388fe2a8af33a73f05be7759a43 294 SUPERFAMILY SSF103481 42 141 1.7E-12 T 13-10-2018 Trebr_1761 d472d388fe2a8af33a73f05be7759a43 294 SUPERFAMILY SSF103481 217 291 1.29E-15 T 13-10-2018 Trebr_0972 36d649ed60e49c4a95969f21626abb85 653 Gene3D G3DSA:3.40.50.12780 12 310 1.4E-45 T 13-10-2018 Trebr_0972 36d649ed60e49c4a95969f21626abb85 653 SUPERFAMILY SSF56801 16 617 6.15E-98 T 13-10-2018 Trebr_0972 36d649ed60e49c4a95969f21626abb85 653 Pfam PF00501 AMP-binding enzyme 43 521 2.8E-90 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Trebr_0972 36d649ed60e49c4a95969f21626abb85 653 ProSitePatterns PS00455 Putative AMP-binding domain signature. 201 212 - T 13-10-2018 IPR020845 AMP-binding, conserved site Trebr_0972 36d649ed60e49c4a95969f21626abb85 653 Gene3D G3DSA:3.40.50.12780 336 517 8.6E-36 T 13-10-2018 Trebr_1343 6c8d1b896dce6a10c8390fc4b81f50dc 429 Pfam PF00860 Permease family 16 390 2.3E-46 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Trebr_1343 6c8d1b896dce6a10c8390fc4b81f50dc 429 PIRSF PIRSF005353 1 429 5.0E-172 T 13-10-2018 IPR026033 Purine permease PbuG-like Trebr_0609 8eeaf76d7cda27992be3e156f9ca07ee 231 SUPERFAMILY SSF56281 12 218 1.14E-34 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_0609 8eeaf76d7cda27992be3e156f9ca07ee 231 Pfam PF00753 Metallo-beta-lactamase superfamily 13 215 5.3E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_0609 8eeaf76d7cda27992be3e156f9ca07ee 231 SMART SM00849 25 215 5.0E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_0609 8eeaf76d7cda27992be3e156f9ca07ee 231 Gene3D G3DSA:3.60.15.10 5 227 7.2E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_2533 1481e5b2b15847374a9763f7c7cee8f6 141 Pfam PF12802 MarR family 27 85 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_2533 1481e5b2b15847374a9763f7c7cee8f6 141 Gene3D G3DSA:1.10.10.10 5 137 5.9E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2533 1481e5b2b15847374a9763f7c7cee8f6 141 SMART SM00347 22 121 5.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_2533 1481e5b2b15847374a9763f7c7cee8f6 141 SUPERFAMILY SSF46785 8 137 9.49E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2533 1481e5b2b15847374a9763f7c7cee8f6 141 ProSitePatterns PS01117 MarR-type HTH domain signature. 60 94 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Trebr_2533 1481e5b2b15847374a9763f7c7cee8f6 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 97 3.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_2533 1481e5b2b15847374a9763f7c7cee8f6 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 111 131 3.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_2533 1481e5b2b15847374a9763f7c7cee8f6 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 45 61 3.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_0539 2d6acbf9209f3e57df8872513960ecc8 366 Gene3D G3DSA:3.40.50.2300 34 340 2.8E-111 T 13-10-2018 Trebr_0539 2d6acbf9209f3e57df8872513960ecc8 366 SUPERFAMILY SSF53822 32 351 3.2E-44 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0539 2d6acbf9209f3e57df8872513960ecc8 366 Pfam PF13407 Periplasmic binding protein domain 34 321 4.5E-48 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_0539 2d6acbf9209f3e57df8872513960ecc8 366 Gene3D G3DSA:3.40.50.2300 135 358 2.8E-111 T 13-10-2018 Trebr_0856 9ca67cb2afaa62bf16a8d44b85c4c7ea 322 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 15 308 2.2E-86 T 13-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Trebr_0856 9ca67cb2afaa62bf16a8d44b85c4c7ea 322 Pfam PF03116 NQR2, RnfD, RnfE family 12 307 4.1E-109 T 13-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 Trebr_0856 9ca67cb2afaa62bf16a8d44b85c4c7ea 322 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 10 310 23.528 T 13-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Trebr_0741 6c213a7f45cad803f388d73fd84a9418 332 SUPERFAMILY SSF53448 12 151 3.83E-14 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0741 6c213a7f45cad803f388d73fd84a9418 332 Gene3D G3DSA:3.90.550.10 10 211 1.1E-6 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0336 181df6ac2bca91ae1a06132da1827c17 79 Pfam PF04102 SlyX 16 79 3.4E-18 T 13-10-2018 IPR007236 SlyX Trebr_2476 38b911c43de35e731f8b4b4fc684cec5 243 Gene3D G3DSA:3.40.109.40 15 242 6.0E-44 T 13-10-2018 Trebr_2476 38b911c43de35e731f8b4b4fc684cec5 243 SUPERFAMILY SSF56507 43 236 9.55E-25 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_2476 38b911c43de35e731f8b4b4fc684cec5 243 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 188 235 3.8E-6 T 13-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_0215 f0e2b0a7717e2ae355631abf28c0a8c2 416 SUPERFAMILY SSF46689 10 74 6.14E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0215 f0e2b0a7717e2ae355631abf28c0a8c2 416 SUPERFAMILY SSF46689 226 288 6.74E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0215 f0e2b0a7717e2ae355631abf28c0a8c2 416 Gene3D G3DSA:1.10.357.10 7 133 3.2E-18 T 13-10-2018 Trebr_0215 f0e2b0a7717e2ae355631abf28c0a8c2 416 Pfam PF00440 Bacterial regulatory proteins, tetR family 236 272 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_0215 f0e2b0a7717e2ae355631abf28c0a8c2 416 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 4.8E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_0215 f0e2b0a7717e2ae355631abf28c0a8c2 416 Gene3D G3DSA:1.10.357.10 226 353 1.1E-14 T 13-10-2018 Trebr_0307 349a02a05722d4271d56095e39b3d6fc 519 Gene3D G3DSA:3.30.420.40 6 314 7.8E-49 T 13-10-2018 Trebr_0307 349a02a05722d4271d56095e39b3d6fc 519 Gene3D G3DSA:3.30.420.150 122 307 7.8E-49 T 13-10-2018 Trebr_0307 349a02a05722d4271d56095e39b3d6fc 519 SUPERFAMILY SSF109604 335 518 1.94E-41 T 13-10-2018 Trebr_0307 349a02a05722d4271d56095e39b3d6fc 519 Pfam PF02541 Ppx/GppA phosphatase family 38 319 3.6E-28 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Trebr_0307 349a02a05722d4271d56095e39b3d6fc 519 SUPERFAMILY SSF53067 149 318 1.36E-16 T 13-10-2018 Trebr_0307 349a02a05722d4271d56095e39b3d6fc 519 Pfam PF01966 HD domain 350 466 2.9E-8 T 13-10-2018 IPR006674 HD domain Trebr_0307 349a02a05722d4271d56095e39b3d6fc 519 SUPERFAMILY SSF53067 6 137 1.59E-24 T 13-10-2018 Trebr_0307 349a02a05722d4271d56095e39b3d6fc 519 Gene3D G3DSA:1.10.3210.10 329 519 1.7E-45 T 13-10-2018 Trebr_0875 fae48609f2836b2afe38de7cf1495b95 542 SUPERFAMILY SSF52540 1 270 4.3E-110 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0875 fae48609f2836b2afe38de7cf1495b95 542 Pfam PF06418 CTP synthase N-terminus 3 267 3.1E-116 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Trebr_0875 fae48609f2836b2afe38de7cf1495b95 542 TIGRFAM TIGR00337 PyrG: CTP synthase 2 528 5.3E-196 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Trebr_0875 fae48609f2836b2afe38de7cf1495b95 542 SUPERFAMILY SSF52317 289 532 3.44E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_0875 fae48609f2836b2afe38de7cf1495b95 542 Pfam PF00117 Glutamine amidotransferase class-I 304 526 1.7E-34 T 13-10-2018 IPR017926 Glutamine amidotransferase Trebr_0875 fae48609f2836b2afe38de7cf1495b95 542 Gene3D G3DSA:3.40.50.880 286 540 2.8E-72 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_0875 fae48609f2836b2afe38de7cf1495b95 542 Gene3D G3DSA:3.40.50.300 1 285 9.4E-125 T 13-10-2018 Trebr_1199 74ee4fa8f164d6296884275bdd5625da 258 SUPERFAMILY SSF52540 14 236 2.25E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1199 74ee4fa8f164d6296884275bdd5625da 258 Gene3D G3DSA:3.40.50.300 13 254 2.5E-55 T 13-10-2018 Trebr_1199 74ee4fa8f164d6296884275bdd5625da 258 SMART SM00382 50 223 4.9E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1199 74ee4fa8f164d6296884275bdd5625da 258 Pfam PF00005 ABC transporter 41 173 1.2E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_2473 5d15c67a92fba522853e891283951d0b 121 Pfam PF04304 Protein of unknown function (DUF454) 7 116 7.2E-22 T 13-10-2018 IPR007401 Protein of unknown function DUF454 Trebr_0282 16ae7964ba041b2a5a941db2a2bae73c 258 Pfam PF04055 Radical SAM superfamily 28 184 3.0E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_0282 16ae7964ba041b2a5a941db2a2bae73c 258 PIRSF PIRSF000371 58 249 1.6E-36 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Trebr_0282 16ae7964ba041b2a5a941db2a2bae73c 258 PIRSF PIRSF000371 1 59 1.2E-22 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Trebr_0282 16ae7964ba041b2a5a941db2a2bae73c 258 ProSitePatterns PS01087 Radical activating enzymes signature. 21 42 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 Trebr_0282 16ae7964ba041b2a5a941db2a2bae73c 258 SUPERFAMILY SSF102114 30 210 3.79E-13 T 13-10-2018 Trebr_0282 16ae7964ba041b2a5a941db2a2bae73c 258 Gene3D G3DSA:3.20.20.70 8 254 5.3E-63 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_0282 16ae7964ba041b2a5a941db2a2bae73c 258 Pfam PF13353 4Fe-4S single cluster domain 20 137 1.5E-15 T 13-10-2018 Trebr_1917 7f361f2e1ef41710fa14b2e3e95424f1 330 SUPERFAMILY SSF75005 24 322 3.45E-78 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily Trebr_1917 7f361f2e1ef41710fa14b2e3e95424f1 330 Gene3D G3DSA:2.115.10.20 1 327 5.5E-115 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily Trebr_1917 7f361f2e1ef41710fa14b2e3e95424f1 330 PIRSF PIRSF016202 6 326 8.4E-92 T 13-10-2018 IPR007184 Mannoside phosphorylase Trebr_1917 7f361f2e1ef41710fa14b2e3e95424f1 330 Pfam PF04041 beta-1,4-mannooligosaccharide phosphorylase 9 323 1.8E-62 T 13-10-2018 IPR007184 Mannoside phosphorylase Trebr_2282 c32e1ad2749db1b08ddd1665f52a61e0 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 25.678 T 13-10-2018 IPR023053 Ribosomal protein S14, type Z Trebr_2282 c32e1ad2749db1b08ddd1665f52a61e0 61 Gene3D G3DSA:4.10.830.10 1 61 1.4E-29 T 13-10-2018 Trebr_2282 c32e1ad2749db1b08ddd1665f52a61e0 61 Pfam PF00253 Ribosomal protein S14p/S29e 9 60 1.4E-25 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2282 c32e1ad2749db1b08ddd1665f52a61e0 61 SUPERFAMILY SSF57716 3 61 2.64E-21 T 13-10-2018 Trebr_1463 e4f8835dafc2b370a22e546a611bd2c6 185 Pfam PF04542 Sigma-70 region 2 25 91 2.6E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_1463 e4f8835dafc2b370a22e546a611bd2c6 185 Gene3D G3DSA:1.10.1740.10 5 103 6.8E-12 T 13-10-2018 Trebr_1463 e4f8835dafc2b370a22e546a611bd2c6 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 175 1.3E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Trebr_1463 e4f8835dafc2b370a22e546a611bd2c6 185 Gene3D G3DSA:1.10.10.10 104 180 1.8E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1463 e4f8835dafc2b370a22e546a611bd2c6 185 SUPERFAMILY SSF88659 111 178 1.1E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Trebr_1463 e4f8835dafc2b370a22e546a611bd2c6 185 Pfam PF08281 Sigma-70, region 4 122 173 4.1E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Trebr_1463 e4f8835dafc2b370a22e546a611bd2c6 185 SUPERFAMILY SSF88946 16 103 1.45E-13 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Trebr_0892 d4d16b2ad929d2c8c153de958dbc730f 256 Gene3D G3DSA:2.50.20.10 21 253 5.2E-71 T 13-10-2018 Trebr_0892 d4d16b2ad929d2c8c153de958dbc730f 256 Pfam PF17131 Outer membrane lipoprotein-sorting protein 72 252 2.8E-65 T 13-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein Trebr_1349 31e3ac9157e9d81a5b0cbf310424b3a8 76 Pfam PF09723 Zinc ribbon domain 1 39 1.2E-19 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Trebr_1349 31e3ac9157e9d81a5b0cbf310424b3a8 76 SMART SM00834 1 41 2.3E-21 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Trebr_1349 31e3ac9157e9d81a5b0cbf310424b3a8 76 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 1.0E-22 T 13-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Trebr_1349 31e3ac9157e9d81a5b0cbf310424b3a8 76 Gene3D G3DSA:2.20.28.30 1 40 1.0E-5 T 13-10-2018 Trebr_2516 0607519b2e2ad93983f5a0ffe8678aae 226 Pfam PF13545 Crp-like helix-turn-helix domain 157 214 7.3E-8 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Trebr_2516 0607519b2e2ad93983f5a0ffe8678aae 226 Gene3D G3DSA:2.60.120.1460 1 221 1.3E-51 T 13-10-2018 Trebr_2516 0607519b2e2ad93983f5a0ffe8678aae 226 Pfam PF00027 Cyclic nucleotide-binding domain 32 115 8.8E-11 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_2516 0607519b2e2ad93983f5a0ffe8678aae 226 SUPERFAMILY SSF51206 5 147 9.43E-26 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like Trebr_2516 0607519b2e2ad93983f5a0ffe8678aae 226 SUPERFAMILY SSF46785 153 220 7.8E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0184 d1a9d32c42fab21916aee4e54cb0ccdf 616 Gene3D G3DSA:2.60.120.260 479 616 6.3E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_0184 d1a9d32c42fab21916aee4e54cb0ccdf 616 Pfam PF03659 Glycosyl hydrolase family 71 204 371 6.1E-11 T 13-10-2018 IPR005197 Glycoside hydrolase family 71 GO:0016787 Trebr_0184 d1a9d32c42fab21916aee4e54cb0ccdf 616 Gene3D G3DSA:3.20.20.80 62 388 1.9E-52 T 13-10-2018 Trebr_0184 d1a9d32c42fab21916aee4e54cb0ccdf 616 Pfam PF00754 F5/8 type C domain 495 611 1.2E-14 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain Trebr_0184 d1a9d32c42fab21916aee4e54cb0ccdf 616 SMART SM00231 479 616 0.0081 T 13-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain Trebr_0184 d1a9d32c42fab21916aee4e54cb0ccdf 616 SUPERFAMILY SSF49785 476 615 1.63E-20 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_1755 f0f21b8095b3060fef7055106e948b6c 403 SUPERFAMILY SSF53383 7 396 3.71E-90 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1755 f0f21b8095b3060fef7055106e948b6c 403 PIRSF PIRSF000390 3 400 5.7E-89 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_1755 f0f21b8095b3060fef7055106e948b6c 403 Gene3D G3DSA:3.40.640.10 1 272 3.0E-83 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1755 f0f21b8095b3060fef7055106e948b6c 403 Gene3D G3DSA:3.90.1150.10 273 398 1.4E-26 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1755 f0f21b8095b3060fef7055106e948b6c 403 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 393 1.4E-99 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_0022 023514d8d7dbcd57d1788b65e6e9417f 300 SUPERFAMILY SSF161098 17 300 5.4E-52 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0022 023514d8d7dbcd57d1788b65e6e9417f 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 292 8.7E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0022 023514d8d7dbcd57d1788b65e6e9417f 300 Gene3D G3DSA:1.10.3720.10 11 291 2.2E-63 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1871 9c50983be5dcd5101a8572f3ea28a9b9 278 Pfam PF00535 Glycosyl transferase family 2 19 128 5.0E-9 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_1871 9c50983be5dcd5101a8572f3ea28a9b9 278 SUPERFAMILY SSF53448 5 264 3.26E-35 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1871 9c50983be5dcd5101a8572f3ea28a9b9 278 Gene3D G3DSA:3.90.550.10 3 247 1.7E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0437 d7b7066328eed420eb790359fa9f0118 291 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 3.1E-12 T 13-10-2018 Trebr_0437 d7b7066328eed420eb790359fa9f0118 291 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 286 7.8E-26 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_1654 16353996e8fedca3b1884258e5b7f513 348 Pfam PF04230 Polysaccharide pyruvyl transferase 13 287 2.6E-30 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase Trebr_2307 fee4e1609a03c3f97172b92e1efa9b65 59 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 5 58 6.8E-19 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Trebr_2307 fee4e1609a03c3f97172b92e1efa9b65 59 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 4 59 2.3E-18 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Trebr_2307 fee4e1609a03c3f97172b92e1efa9b65 59 Hamap MF_00422 Protein translocase subunit SecE [secE]. 2 57 12.419 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Trebr_2307 fee4e1609a03c3f97172b92e1efa9b65 59 Gene3D G3DSA:1.20.5.1030 1 58 5.7E-20 T 13-10-2018 IPR038379 SecE superfamily Trebr_0135 82d6a1e61442afa2cceb91112d9237b1 124 Pfam PF13411 MerR HTH family regulatory protein 1 64 5.9E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_0135 82d6a1e61442afa2cceb91112d9237b1 124 Gene3D G3DSA:1.10.1660.10 1 124 5.7E-36 T 13-10-2018 Trebr_0135 82d6a1e61442afa2cceb91112d9237b1 124 SUPERFAMILY SSF46955 1 116 6.96E-33 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily Trebr_0135 82d6a1e61442afa2cceb91112d9237b1 124 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.2E-9 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_0135 82d6a1e61442afa2cceb91112d9237b1 124 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.2E-9 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_0135 82d6a1e61442afa2cceb91112d9237b1 124 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.2E-9 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_0135 82d6a1e61442afa2cceb91112d9237b1 124 SMART SM00422 1 70 6.3E-24 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Trebr_2503 abadb0ac18496c05336a49a25f880abd 333 Gene3D G3DSA:3.40.50.1820 86 331 7.6E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2503 abadb0ac18496c05336a49a25f880abd 333 Pfam PF12146 Serine aminopeptidase, S33 117 213 5.8E-10 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 Trebr_2503 abadb0ac18496c05336a49a25f880abd 333 SUPERFAMILY SSF53474 56 332 8.81E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_0710 8606aa98a4e55ebf9b35b9ed0c2f0203 427 SUPERFAMILY SSF56281 5 296 2.52E-41 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_0710 8606aa98a4e55ebf9b35b9ed0c2f0203 427 SMART SM00849 34 209 7.0E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_0710 8606aa98a4e55ebf9b35b9ed0c2f0203 427 SUPERFAMILY SSF52218 260 413 1.45E-24 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0710 8606aa98a4e55ebf9b35b9ed0c2f0203 427 Pfam PF00753 Metallo-beta-lactamase superfamily 35 173 1.2E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_0710 8606aa98a4e55ebf9b35b9ed0c2f0203 427 PIRSF PIRSF005243 1 417 1.8E-101 T 13-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 Trebr_0710 8606aa98a4e55ebf9b35b9ed0c2f0203 427 Gene3D G3DSA:3.60.15.10 1 252 9.8E-75 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_0710 8606aa98a4e55ebf9b35b9ed0c2f0203 427 Gene3D G3DSA:3.40.50.360 261 422 8.9E-24 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_1864 ce54866a4977db803ef1419d3e1abffc 394 Pfam PF01937 Protein of unknown function DUF89 80 346 2.2E-37 T 13-10-2018 IPR002791 Domain of unknown function DUF89 Trebr_1864 ce54866a4977db803ef1419d3e1abffc 394 SUPERFAMILY SSF111321 69 344 7.85E-26 T 13-10-2018 IPR036075 AF1104-like superfamily Trebr_0559 f1cbed9c0874da2b6ed77c8cf970c5a6 746 Pfam PF01136 Peptidase family U32 73 288 4.8E-75 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Trebr_0644 9ccde43f2d4b7b06542cdf8dba53b5ad 712 SUPERFAMILY SSF51161 230 352 6.57E-6 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily Trebr_0644 9ccde43f2d4b7b06542cdf8dba53b5ad 712 Gene3D G3DSA:2.160.10.10 219 375 3.8E-7 T 13-10-2018 Trebr_0644 9ccde43f2d4b7b06542cdf8dba53b5ad 712 Pfam PF16314 Domain of unknown function (DUF4954) 26 699 4.4E-134 T 13-10-2018 IPR032533 Protein of unknown function DUF4954 Trebr_0034 e26395a9324629c4e188f0e756e38482 181 Gene3D G3DSA:3.60.21.10 1 180 2.0E-54 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like Trebr_0034 e26395a9324629c4e188f0e756e38482 181 SUPERFAMILY SSF56300 2 170 1.52E-32 T 13-10-2018 Trebr_0034 e26395a9324629c4e188f0e756e38482 181 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 164 1.5E-17 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Trebr_0034 e26395a9324629c4e188f0e756e38482 181 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 2 159 2.5E-20 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 Gene3D G3DSA:3.90.170.10 240 408 2.4E-63 T 13-10-2018 Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 Gene3D G3DSA:3.40.440.10 4 232 2.8E-76 T 13-10-2018 Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 Gene3D G3DSA:1.10.300.10 100 176 2.8E-76 T 13-10-2018 Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 SUPERFAMILY SSF52540 1 406 6.27E-138 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 9 16 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 4 405 2.7E-134 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 408 153.764 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 SMART SM00788 2 401 1.1E-198 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Trebr_1884 05f53417e3f4010b4c260e6f00087350 408 Pfam PF00709 Adenylosuccinate synthetase 3 399 2.8E-149 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Trebr_0600 8426e7a0aad503e3fc1904e4af96c247 110 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 9 104 4.0E-19 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD Trebr_0600 8426e7a0aad503e3fc1904e4af96c247 110 PIRSF PIRSF003203 2 107 3.3E-29 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD Trebr_1683 6c4fcfc142d8ba9910668198f465cbd7 338 Pfam PF13343 Bacterial extracellular solute-binding protein 85 313 1.7E-27 T 13-10-2018 Trebr_1683 6c4fcfc142d8ba9910668198f465cbd7 338 Gene3D G3DSA:3.40.190.10 34 312 1.1E-105 T 13-10-2018 Trebr_1683 6c4fcfc142d8ba9910668198f465cbd7 338 Gene3D G3DSA:3.40.190.10 137 331 1.1E-105 T 13-10-2018 Trebr_1683 6c4fcfc142d8ba9910668198f465cbd7 338 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 30 317 5.4E-85 T 13-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 Trebr_1683 6c4fcfc142d8ba9910668198f465cbd7 338 SUPERFAMILY SSF53850 31 335 6.34E-66 T 13-10-2018 Trebr_1883 ec479d6429493b6aa801a688982cea3c 640 ProSitePatterns PS00455 Putative AMP-binding domain signature. 185 196 - T 13-10-2018 IPR020845 AMP-binding, conserved site Trebr_1883 ec479d6429493b6aa801a688982cea3c 640 Pfam PF00501 AMP-binding enzyme 33 463 1.5E-82 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Trebr_1883 ec479d6429493b6aa801a688982cea3c 640 SUPERFAMILY SSF56801 9 606 2.22E-99 T 13-10-2018 Trebr_2154 25ca412b5970b8a18a414c0ba2a63f7f 563 ProSitePatterns PS00455 Putative AMP-binding domain signature. 204 215 - T 13-10-2018 IPR020845 AMP-binding, conserved site Trebr_2154 25ca412b5970b8a18a414c0ba2a63f7f 563 Gene3D G3DSA:3.40.50.12780 2 447 9.8E-151 T 13-10-2018 Trebr_2154 25ca412b5970b8a18a414c0ba2a63f7f 563 Gene3D G3DSA:3.30.300.30 450 562 5.9E-29 T 13-10-2018 Trebr_2154 25ca412b5970b8a18a414c0ba2a63f7f 563 Pfam PF00501 AMP-binding enzyme 39 454 1.4E-77 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Trebr_2154 25ca412b5970b8a18a414c0ba2a63f7f 563 SUPERFAMILY SSF56801 15 553 1.44E-141 T 13-10-2018 Trebr_2154 25ca412b5970b8a18a414c0ba2a63f7f 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 463 541 3.6E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Trebr_2141 3f0d9df609be4048a8fac75c7dfa5242 285 Pfam PF00149 Calcineurin-like phosphoesterase 65 241 2.4E-17 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Trebr_2141 3f0d9df609be4048a8fac75c7dfa5242 285 SUPERFAMILY SSF56300 60 279 2.43E-32 T 13-10-2018 Trebr_2141 3f0d9df609be4048a8fac75c7dfa5242 285 Gene3D G3DSA:3.60.21.10 44 243 5.1E-26 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 619 660 5.9E-9 T 13-10-2018 IPR006530 YD repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1187 1218 1.5E-5 T 13-10-2018 IPR006530 YD repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 661 701 4.1E-4 T 13-10-2018 IPR006530 YD repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1229 1264 1.0E-4 T 13-10-2018 IPR006530 YD repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1334 1369 0.0011 T 13-10-2018 IPR006530 YD repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 951 985 2.4E-4 T 13-10-2018 IPR006530 YD repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1145 1185 1.4E-4 T 13-10-2018 IPR006530 YD repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1272 1311 3.5E-5 T 13-10-2018 IPR006530 YD repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Gene3D G3DSA:2.180.10.10 1707 1910 1.2E-17 T 13-10-2018 Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Gene3D G3DSA:3.90.930.1 536 688 3.5E-12 T 13-10-2018 Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Gene3D G3DSA:3.90.930.1 1317 1464 2.7E-5 T 13-10-2018 Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Gene3D G3DSA:3.90.930.1 1113 1255 1.3E-11 T 13-10-2018 Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Gene3D G3DSA:3.90.930.1 952 1112 1.8E-6 T 13-10-2018 Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1836 1910 8.3E-16 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Pfam PF05593 RHS Repeat 1187 1218 1.5E-7 T 13-10-2018 IPR031325 RHS repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Pfam PF05593 RHS Repeat 640 669 4.3E-5 T 13-10-2018 IPR031325 RHS repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Pfam PF05593 RHS Repeat 1229 1265 6.0E-6 T 13-10-2018 IPR031325 RHS repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Pfam PF05593 RHS Repeat 619 656 7.9E-7 T 13-10-2018 IPR031325 RHS repeat Trebr_1325 6caaa6db322463a3dd05e89bf42c938a 2093 Pfam PF05593 RHS Repeat 1166 1203 3.4E-9 T 13-10-2018 IPR031325 RHS repeat Trebr_2011 a5a54481190fb4e8ea7a3c6230d8bcf9 562 Pfam PF01740 STAS domain 452 552 1.7E-11 T 13-10-2018 IPR002645 STAS domain Trebr_2011 a5a54481190fb4e8ea7a3c6230d8bcf9 562 Pfam PF00916 Sulfate permease family 18 381 3.2E-88 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Trebr_2011 a5a54481190fb4e8ea7a3c6230d8bcf9 562 Gene3D G3DSA:3.30.750.24 437 560 1.6E-21 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_2011 a5a54481190fb4e8ea7a3c6230d8bcf9 562 SUPERFAMILY SSF52091 451 556 9.03E-12 T 13-10-2018 IPR036513 STAS domain superfamily Trebr_0143 932983fd8c933b22b2eeca61d79a728b 277 SMART SM00342 21 104 1.8E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0143 932983fd8c933b22b2eeca61d79a728b 277 Gene3D G3DSA:3.20.80.10 133 277 1.1E-24 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_0143 932983fd8c933b22b2eeca61d79a728b 277 SMART SM00871 132 277 3.7E-13 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding Trebr_0143 932983fd8c933b22b2eeca61d79a728b 277 Pfam PF12833 Helix-turn-helix domain 28 105 2.8E-11 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Trebr_0143 932983fd8c933b22b2eeca61d79a728b 277 SUPERFAMILY SSF55136 133 276 1.73E-20 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_0143 932983fd8c933b22b2eeca61d79a728b 277 Pfam PF06445 GyrI-like small molecule binding domain 133 276 4.5E-15 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain Trebr_0143 932983fd8c933b22b2eeca61d79a728b 277 SUPERFAMILY SSF46689 5 55 5.99E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0143 932983fd8c933b22b2eeca61d79a728b 277 Gene3D G3DSA:1.10.10.60 3 109 9.4E-21 T 13-10-2018 Trebr_1825 053a7374da11462b56565cf2a6c3fe4e 271 Gene3D G3DSA:3.40.50.1110 29 267 1.7E-48 T 13-10-2018 IPR036514 SGNH hydrolase superfamily Trebr_1825 053a7374da11462b56565cf2a6c3fe4e 271 SUPERFAMILY SSF52266 30 263 5.0E-33 T 13-10-2018 Trebr_2100 197badd8e0027c3e78de9eb87a92cebb 434 Gene3D G3DSA:3.40.190.10 39 404 1.6E-14 T 13-10-2018 Trebr_2100 197badd8e0027c3e78de9eb87a92cebb 434 Pfam PF01547 Bacterial extracellular solute-binding protein 90 334 0.003 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2100 197badd8e0027c3e78de9eb87a92cebb 434 SUPERFAMILY SSF53850 50 431 3.61E-16 T 13-10-2018 Trebr_1298 0c622e1edaa54672996f9d823480f5ed 443 Pfam PF03772 Competence protein 203 439 3.8E-40 T 13-10-2018 IPR004477 ComEC/Rec2-related protein Trebr_1298 0c622e1edaa54672996f9d823480f5ed 443 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 225 398 1.2E-20 T 13-10-2018 IPR004477 ComEC/Rec2-related protein Trebr_1468 0b16373064ce7570f17116d163a3bf84 221 Pfam PF04002 RadC-like JAB domain 95 213 8.1E-41 T 13-10-2018 IPR025657 RadC-like JAB domain Trebr_1468 0b16373064ce7570f17116d163a3bf84 221 TIGRFAM TIGR00608 radc: DNA repair protein RadC 9 214 6.7E-53 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 Trebr_1468 0b16373064ce7570f17116d163a3bf84 221 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 164 169 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site Trebr_1468 0b16373064ce7570f17116d163a3bf84 221 Gene3D G3DSA:3.40.140.10 92 215 3.9E-42 T 13-10-2018 Trebr_1004 540f861863215027a8861b3a00b44413 196 SUPERFAMILY SSF52218 1 192 1.73E-33 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_1004 540f861863215027a8861b3a00b44413 196 Pfam PF02525 Flavodoxin-like fold 1 185 3.1E-30 T 13-10-2018 IPR003680 Flavodoxin-like fold Trebr_1004 540f861863215027a8861b3a00b44413 196 Gene3D G3DSA:3.40.50.360 1 195 5.0E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_0260 c0ebfa7c98b23914a43c460d2b0a5bf6 125 SUPERFAMILY SSF53146 1 114 6.67E-33 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Trebr_0260 c0ebfa7c98b23914a43c460d2b0a5bf6 125 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 9 95 1.1E-19 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Trebr_0260 c0ebfa7c98b23914a43c460d2b0a5bf6 125 Gene3D G3DSA:3.30.420.130 1 103 4.0E-30 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Trebr_0072 f2ac96eb756064702151737cea6b8986 220 SUPERFAMILY SSF56784 12 210 9.75E-34 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_0072 f2ac96eb756064702151737cea6b8986 220 Gene3D G3DSA:3.40.50.1000 12 202 1.1E-38 T 13-10-2018 IPR023214 HAD superfamily Trebr_0072 f2ac96eb756064702151737cea6b8986 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 6.3E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_0072 f2ac96eb756064702151737cea6b8986 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 130 146 6.3E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_0072 f2ac96eb756064702151737cea6b8986 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 148 168 6.3E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_0072 f2ac96eb756064702151737cea6b8986 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 6.3E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_0072 f2ac96eb756064702151737cea6b8986 220 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 12 185 6.0E-15 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_0072 f2ac96eb756064702151737cea6b8986 220 Gene3D G3DSA:1.10.150.240 23 85 1.1E-38 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Trebr_0072 f2ac96eb756064702151737cea6b8986 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 14 185 7.8E-21 T 13-10-2018 Trebr_2077 f6bed23ae0845de3e8591f890367bffb 307 Pfam PF12784 PD-(D/E)XK nuclease family transposase 25 123 8.0E-13 T 13-10-2018 Trebr_2077 f6bed23ae0845de3e8591f890367bffb 307 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 298 2.2E-24 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_1236 68908a299c492922cab1583fa3753cfe 286 Gene3D G3DSA:3.50.50.60 116 217 3.8E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1236 68908a299c492922cab1583fa3753cfe 286 Gene3D G3DSA:3.50.50.60 4 275 3.8E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1236 68908a299c492922cab1583fa3753cfe 286 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 270 2.2E-17 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.4E-14 T 13-10-2018 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 6.4E-14 T 13-10-2018 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 257 6.4E-14 T 13-10-2018 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 SUPERFAMILY SSF51905 1 283 2.85E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 263 2.8E-25 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 58 68 2.8E-25 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 124 136 2.8E-25 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 2.8E-25 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 2.8E-25 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_1236 68908a299c492922cab1583fa3753cfe 286 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 38 53 2.8E-25 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Trebr_0591 ae98022439912cbda59895923113eb61 594 Pfam PF00271 Helicase conserved C-terminal domain 285 392 1.6E-15 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_0591 ae98022439912cbda59895923113eb61 594 Pfam PF00270 DEAD/DEAH box helicase 103 247 7.8E-15 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Trebr_0591 ae98022439912cbda59895923113eb61 594 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 104 443 3.5E-78 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 Trebr_0591 ae98022439912cbda59895923113eb61 594 Gene3D G3DSA:3.40.50.300 270 402 2.6E-32 T 13-10-2018 Trebr_0591 ae98022439912cbda59895923113eb61 594 SMART SM00487 29 275 1.1E-21 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Trebr_0591 ae98022439912cbda59895923113eb61 594 SUPERFAMILY SSF52540 127 407 5.8E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0591 ae98022439912cbda59895923113eb61 594 Gene3D G3DSA:1.10.10.10 403 554 6.3E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0591 ae98022439912cbda59895923113eb61 594 Gene3D G3DSA:3.40.50.300 87 267 9.6E-48 T 13-10-2018 Trebr_0591 ae98022439912cbda59895923113eb61 594 SMART SM00490 310 393 4.2E-20 T 13-10-2018 IPR001650 Helicase, C-terminal Trebr_0441 8894cb717ce6bea54615aa57924e412b 371 Gene3D G3DSA:3.40.50.2000 205 371 3.9E-9 T 13-10-2018 Trebr_0441 8894cb717ce6bea54615aa57924e412b 371 SUPERFAMILY SSF53756 65 369 1.88E-13 T 13-10-2018 Trebr_1033 1613e1189e7f80e0e1a03b475fc1ddc6 449 TIGRFAM TIGR00797 matE: MATE efflux family protein 26 423 5.1E-54 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1033 1613e1189e7f80e0e1a03b475fc1ddc6 449 Pfam PF01554 MatE 26 187 1.0E-27 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1033 1613e1189e7f80e0e1a03b475fc1ddc6 449 Pfam PF01554 MatE 281 403 7.6E-12 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1033 1613e1189e7f80e0e1a03b475fc1ddc6 449 PIRSF PIRSF006603 2 448 8.9E-80 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2256 bb7e0f2a7b4432c23cf24aac9579bc63 375 SUPERFAMILY SSF52540 1 294 4.72E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2256 bb7e0f2a7b4432c23cf24aac9579bc63 375 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 271 1.4E-15 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Trebr_2252 78af9e0f9c08549f609c8f29b0d82736 247 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 61 225 5.6E-21 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 Trebr_2387 a54456ece2ca0dff2030218cf1aa5519 264 Pfam PF01925 Sulfite exporter TauE/SafE 10 253 2.6E-26 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Trebr_1057 5ca51ff54c72531b615125790a179b10 225 Pfam PF03692 Putative zinc- or iron-chelating domain 41 122 8.0E-9 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 Gene3D G3DSA:3.40.50.170 102 297 1.4E-63 T 13-10-2018 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 SUPERFAMILY SSF53328 103 293 1.7E-54 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 295 9.7E-92 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 8 34 6.4E-35 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 248 270 6.4E-35 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 270 295 6.4E-35 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 125 152 6.4E-35 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 103 125 6.4E-35 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 SUPERFAMILY SSF55021 5 59 9.16E-9 T 13-10-2018 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 Pfam PF00551 Formyl transferase 103 276 2.1E-42 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 Gene3D G3DSA:3.30.70.260 2 101 2.7E-16 T 13-10-2018 Trebr_0708 5cb7ded0ec1996758eaf23941baa9e2a 297 PIRSF PIRSF036480 3 297 1.6E-96 T 13-10-2018 Trebr_2408 f17a627a863b2c3a0b858c9085d4e2ec 219 Gene3D G3DSA:2.60.120.560 36 195 2.4E-5 T 13-10-2018 Trebr_2507 dd7937c74211975aad5da0cefa8aa5ab 251 SUPERFAMILY SSF46894 184 244 1.9E-9 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_2507 dd7937c74211975aad5da0cefa8aa5ab 251 Gene3D G3DSA:1.10.10.10 184 244 4.4E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0651 ccf3ea2998de6eab9da4e2974c7ff83c 262 Gene3D G3DSA:3.90.79.20 1 132 1.7E-14 T 13-10-2018 Trebr_0651 ccf3ea2998de6eab9da4e2974c7ff83c 262 Gene3D G3DSA:3.90.79.10 133 259 4.1E-38 T 13-10-2018 Trebr_0651 ccf3ea2998de6eab9da4e2974c7ff83c 262 ProSitePatterns PS00893 Nudix box signature. 166 187 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Trebr_0651 ccf3ea2998de6eab9da4e2974c7ff83c 262 SUPERFAMILY SSF55811 88 248 3.25E-39 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Trebr_0651 ccf3ea2998de6eab9da4e2974c7ff83c 262 Pfam PF00293 NUDIX domain 137 244 6.3E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Trebr_0651 ccf3ea2998de6eab9da4e2974c7ff83c 262 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 102 131 7.7E-6 T 13-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 Trebr_2344 42b366eb78abb940d4cf76afde1f6c8c 310 Pfam PF04468 PSP1 C-terminal conserved region 101 184 4.1E-23 T 13-10-2018 IPR007557 PSP1, C-terminal Trebr_1022 6b061df32f2f50f8ae19b3b63ea16b67 303 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 2.7E-12 T 13-10-2018 Trebr_1022 6b061df32f2f50f8ae19b3b63ea16b67 303 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 298 5.0E-25 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_1197 076353748314a6554464217b90989419 154 Pfam PF03477 ATP cone domain 50 137 1.3E-20 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Trebr_1197 076353748314a6554464217b90989419 154 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 154 76.484 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Trebr_1197 076353748314a6554464217b90989419 154 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 149 2.2E-55 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Trebr_2228 572787d6441bee377cd5505b054ea99e 259 Gene3D G3DSA:3.90.550.10 1 227 2.9E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2228 572787d6441bee377cd5505b054ea99e 259 Pfam PF00535 Glycosyl transferase family 2 4 137 4.9E-23 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_2228 572787d6441bee377cd5505b054ea99e 259 SUPERFAMILY SSF53448 1 234 3.19E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2496 40bfa790bbfe2c17158cb7a54d25c3d4 255 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 10 241 1.2E-51 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Trebr_2496 40bfa790bbfe2c17158cb7a54d25c3d4 255 Gene3D G3DSA:3.40.1390.30 101 226 4.7E-69 T 13-10-2018 Trebr_2496 40bfa790bbfe2c17158cb7a54d25c3d4 255 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 3 253 3.0E-49 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Trebr_2496 40bfa790bbfe2c17158cb7a54d25c3d4 255 Gene3D G3DSA:3.40.1390.30 8 240 4.7E-69 T 13-10-2018 Trebr_2496 40bfa790bbfe2c17158cb7a54d25c3d4 255 SUPERFAMILY SSF102705 2 251 2.75E-61 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Trebr_1796 784b42ff33e4907cadc6deae8015d7aa 287 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 1.6E-12 T 13-10-2018 Trebr_1796 784b42ff33e4907cadc6deae8015d7aa 287 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 282 1.2E-23 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_1829 2f7f99dc3a9067741c882018c7265764 355 Gene3D G3DSA:3.20.20.370 132 350 8.1E-65 T 13-10-2018 Trebr_1829 2f7f99dc3a9067741c882018c7265764 355 Pfam PF04748 Divergent polysaccharide deacetylase 138 346 4.1E-64 T 13-10-2018 IPR006837 Divergent polysaccharide deacetylase Trebr_1829 2f7f99dc3a9067741c882018c7265764 355 SUPERFAMILY SSF88713 134 349 2.41E-53 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Trebr_1450 2743eb3ce49e17300c86e54e65f883bf 152 SUPERFAMILY SSF55136 1 144 1.23E-18 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_1450 2743eb3ce49e17300c86e54e65f883bf 152 Gene3D G3DSA:3.20.80.10 1 151 1.7E-28 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Trebr_1450 2743eb3ce49e17300c86e54e65f883bf 152 SMART SM00871 1 151 1.5E-24 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding Trebr_1450 2743eb3ce49e17300c86e54e65f883bf 152 Pfam PF14526 Integron-associated effector binding protein 5 149 5.0E-24 T 13-10-2018 IPR029441 Integron-associated effector binding protein Trebr_1791 6c846e7a8e12f8c8c3c7da4338ebe45f 303 SUPERFAMILY SSF46785 2 58 1.06E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1791 6c846e7a8e12f8c8c3c7da4338ebe45f 303 Pfam PF13280 WYL domain 132 298 6.7E-31 T 13-10-2018 IPR026881 WYL domain Trebr_1791 6c846e7a8e12f8c8c3c7da4338ebe45f 303 PIRSF PIRSF016838 1 303 1.0E-24 T 13-10-2018 IPR028349 Protein PafC Trebr_1791 6c846e7a8e12f8c8c3c7da4338ebe45f 303 Gene3D G3DSA:1.10.10.10 2 62 8.5E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1791 6c846e7a8e12f8c8c3c7da4338ebe45f 303 Pfam PF08279 HTH domain 5 57 3.1E-12 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 Trebr_0319 6d8c9c25a2a16f9b098586bccaf3e6ce 124 SUPERFAMILY SSF75138 1 107 7.06E-13 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Trebr_0283 b637d739256306cbe2fb9b7222f9dcc9 487 Pfam PF01943 Polysaccharide biosynthesis protein 7 270 5.9E-29 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Trebr_0283 b637d739256306cbe2fb9b7222f9dcc9 487 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 326 461 7.1E-22 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Trebr_0806 7d9230990c0bed9d9eef82286ef725b1 204 Pfam PF02469 Fasciclin domain 90 194 7.2E-7 T 13-10-2018 IPR000782 FAS1 domain Trebr_0806 7d9230990c0bed9d9eef82286ef725b1 204 Gene3D G3DSA:2.30.180.10 29 195 1.5E-5 T 13-10-2018 IPR036378 FAS1 domain superfamily Trebr_0806 7d9230990c0bed9d9eef82286ef725b1 204 SUPERFAMILY SSF82153 78 193 7.59E-9 T 13-10-2018 IPR036378 FAS1 domain superfamily Trebr_0087 a672c0bb91b63896ae839c080016ce2d 328 Pfam PF00005 ABC transporter 18 157 1.8E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0087 a672c0bb91b63896ae839c080016ce2d 328 SUPERFAMILY SSF52540 2 216 5.13E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0087 a672c0bb91b63896ae839c080016ce2d 328 Gene3D G3DSA:3.40.50.300 1 229 6.3E-65 T 13-10-2018 Trebr_0087 a672c0bb91b63896ae839c080016ce2d 328 SMART SM00382 26 204 1.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1008 e78bdb8ded317dd1b0e89573f9a289f9 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1008 e78bdb8ded317dd1b0e89573f9a289f9 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1008 e78bdb8ded317dd1b0e89573f9a289f9 198 Gene3D G3DSA:1.10.357.10 4 188 1.0E-27 T 13-10-2018 Trebr_1008 e78bdb8ded317dd1b0e89573f9a289f9 198 SUPERFAMILY SSF46689 7 80 2.67E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1008 e78bdb8ded317dd1b0e89573f9a289f9 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 7.0E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_1312 f39e673b7b9e08cc59827bfe10d395c0 135 Gene3D G3DSA:3.90.79.10 4 129 1.3E-30 T 13-10-2018 Trebr_1312 f39e673b7b9e08cc59827bfe10d395c0 135 PRINTS PR00502 NUDIX hydrolase family signature 45 60 1.5E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Trebr_1312 f39e673b7b9e08cc59827bfe10d395c0 135 PRINTS PR00502 NUDIX hydrolase family signature 31 45 1.5E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Trebr_1312 f39e673b7b9e08cc59827bfe10d395c0 135 SUPERFAMILY SSF55811 4 130 1.49E-30 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Trebr_1312 f39e673b7b9e08cc59827bfe10d395c0 135 Pfam PF00293 NUDIX domain 5 118 5.5E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Trebr_0566 4626487e50b605c21bf48b4b4fdbff03 244 Pfam PF00849 RNA pseudouridylate synthase 28 190 4.0E-26 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_0566 4626487e50b605c21bf48b4b4fdbff03 244 Gene3D G3DSA:3.30.2350.10 19 244 1.5E-49 T 13-10-2018 Trebr_0566 4626487e50b605c21bf48b4b4fdbff03 244 SUPERFAMILY SSF55120 14 242 5.28E-49 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_0566 4626487e50b605c21bf48b4b4fdbff03 244 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 73 87 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 PIRSF PIRSF001549 3 434 1.7E-129 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 SUPERFAMILY SSF52954 342 419 8.61E-15 T 13-10-2018 Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 9 419 5.6E-120 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 Gene3D G3DSA:3.40.50.800 337 428 8.6E-17 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 SUPERFAMILY SSF55681 8 329 3.19E-76 T 13-10-2018 Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 Gene3D G3DSA:3.30.930.10 2 336 4.1E-102 T 13-10-2018 Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 Pfam PF13393 Histidyl-tRNA synthetase 12 325 1.3E-50 T 13-10-2018 Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 5 433 26.665 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Trebr_1341 38402574f0edcc33e7ddef50f95c1811 435 Pfam PF03129 Anticodon binding domain 346 428 1.1E-12 T 13-10-2018 IPR004154 Anticodon-binding Trebr_2158 d336d2243cadc345feff82a5f9a6964c 185 Pfam PF03729 Short repeat of unknown function (DUF308) 64 115 9.7E-4 T 13-10-2018 IPR005325 Protein of unknown function DUF308, membrane Trebr_2158 d336d2243cadc345feff82a5f9a6964c 185 Pfam PF03729 Short repeat of unknown function (DUF308) 8 78 8.8E-7 T 13-10-2018 IPR005325 Protein of unknown function DUF308, membrane Trebr_2488 76d2aa28189b09717fc7fc455d39c3ba 478 Pfam PF02055 Glycosyl hydrolase family 30 TIM-barrel domain 48 396 2.2E-57 T 13-10-2018 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_2488 76d2aa28189b09717fc7fc455d39c3ba 478 Gene3D G3DSA:2.60.40.1180 35 474 1.2E-127 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta Trebr_2488 76d2aa28189b09717fc7fc455d39c3ba 478 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 399 474 2.3E-16 T 13-10-2018 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_2488 76d2aa28189b09717fc7fc455d39c3ba 478 PRINTS PR00843 Glycosyl hydrolase family 30 signature 184 201 7.4E-8 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_2488 76d2aa28189b09717fc7fc455d39c3ba 478 PRINTS PR00843 Glycosyl hydrolase family 30 signature 38 58 7.4E-8 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 Trebr_2488 76d2aa28189b09717fc7fc455d39c3ba 478 Gene3D G3DSA:3.20.20.80 46 400 1.2E-127 T 13-10-2018 Trebr_2488 76d2aa28189b09717fc7fc455d39c3ba 478 SUPERFAMILY SSF51445 48 400 2.75E-74 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0565 0756c1f83e6997725872fac17454c9d5 520 SUPERFAMILY SSF51445 4 518 1.6E-161 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_0565 0756c1f83e6997725872fac17454c9d5 520 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 1 518 3.1E-117 T 13-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Trebr_0565 0756c1f83e6997725872fac17454c9d5 520 Gene3D G3DSA:3.20.20.80 1 519 2.6E-186 T 13-10-2018 Trebr_0565 0756c1f83e6997725872fac17454c9d5 520 Pfam PF02446 4-alpha-glucanotransferase 11 497 1.4E-158 T 13-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Trebr_0479 52bfd05f1ae506553ade4f7f56b16b53 264 SUPERFAMILY SSF69593 45 263 5.23E-23 T 13-10-2018 Trebr_0479 52bfd05f1ae506553ade4f7f56b16b53 264 SMART SM00563 93 208 6.0E-11 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Trebr_0479 52bfd05f1ae506553ade4f7f56b16b53 264 Pfam PF01553 Acyltransferase 79 205 1.2E-13 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Trebr_0921 d6cc1c93f4f0249e4773c142f87c2715 258 Pfam PF06738 Putative threonine/serine exporter 12 250 9.8E-61 T 13-10-2018 IPR010619 Putative threonine/serine exporter Trebr_1919 d51b3b3045b7176df5bdbeef94a50273 345 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 39 309 3.0E-19 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 Trebr_1919 d51b3b3045b7176df5bdbeef94a50273 345 Gene3D G3DSA:3.20.20.80 12 342 1.2E-77 T 13-10-2018 Trebr_1919 d51b3b3045b7176df5bdbeef94a50273 345 SUPERFAMILY SSF51445 38 343 4.18E-42 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily Trebr_1397 5be454c2a851219b2004941614686428 177 Pfam PF00694 Aconitase C-terminal domain 55 112 1.2E-19 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Trebr_1397 5be454c2a851219b2004941614686428 177 Gene3D G3DSA:3.20.19.10 1 167 1.1E-42 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Trebr_1397 5be454c2a851219b2004941614686428 177 SUPERFAMILY SSF52016 3 176 5.3E-39 T 13-10-2018 Trebr_1324 c8711521fd29b53997612e01982ee107 701 Pfam PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) 196 256 9.5E-4 T 13-10-2018 IPR013378 Listeria/Bacterioides repeat Trebr_1324 c8711521fd29b53997612e01982ee107 701 Pfam PF03415 Clostripain family 267 398 6.2E-13 T 13-10-2018 IPR005077 Peptidase C11, clostripain Trebr_1324 c8711521fd29b53997612e01982ee107 701 Pfam PF03415 Clostripain family 413 646 5.3E-30 T 13-10-2018 IPR005077 Peptidase C11, clostripain Trebr_1324 c8711521fd29b53997612e01982ee107 701 Gene3D G3DSA:3.40.50.11970 252 385 1.3E-13 T 13-10-2018 Trebr_1165 aa4d871589b4fd820f337fae6463521d 271 SUPERFAMILY SSF143597 44 238 2.75E-55 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily Trebr_1165 aa4d871589b4fd820f337fae6463521d 271 Hamap MF_01499 Diadenylate cyclase [dacA]. 5 252 28.686 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 Trebr_1165 aa4d871589b4fd820f337fae6463521d 271 Gene3D G3DSA:3.40.1700.10 102 253 5.2E-53 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily Trebr_1165 aa4d871589b4fd820f337fae6463521d 271 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 117 233 8.0E-40 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal Trebr_1165 aa4d871589b4fd820f337fae6463521d 271 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 11 250 1.5E-62 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 Trebr_1165 aa4d871589b4fd820f337fae6463521d 271 PIRSF PIRSF004793 5 263 7.8E-78 T 13-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 Trebr_1252 d5740b0913a632492f915ef642a79d21 156 SUPERFAMILY SSF51283 20 156 1.31E-51 T 13-10-2018 IPR036157 dUTPase-like superfamily Trebr_1252 d5740b0913a632492f915ef642a79d21 156 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 11 156 33.268 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Trebr_1252 d5740b0913a632492f915ef642a79d21 156 TIGRFAM TIGR00576 dut: dUTP diphosphatase 18 155 1.1E-54 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Trebr_1252 d5740b0913a632492f915ef642a79d21 156 Pfam PF00692 dUTPase 25 155 5.2E-33 T 13-10-2018 IPR029054 dUTPase-like Trebr_1252 d5740b0913a632492f915ef642a79d21 156 Gene3D G3DSA:2.70.40.10 11 155 8.6E-54 T 13-10-2018 IPR036157 dUTPase-like superfamily Trebr_0900 0e25c4b4da4b8c1fa52ed3fb33104959 598 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 182 3.6E-19 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Trebr_0900 0e25c4b4da4b8c1fa52ed3fb33104959 598 SMART SM00283 308 555 2.1E-47 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0900 0e25c4b4da4b8c1fa52ed3fb33104959 598 SMART SM00304 208 265 5.3E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_0900 0e25c4b4da4b8c1fa52ed3fb33104959 598 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 374 522 6.8E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0900 0e25c4b4da4b8c1fa52ed3fb33104959 598 SUPERFAMILY SSF58104 233 562 6.67E-51 T 13-10-2018 Trebr_0900 0e25c4b4da4b8c1fa52ed3fb33104959 598 Gene3D G3DSA:1.20.1480.50 169 272 5.1E-6 T 13-10-2018 Trebr_0900 0e25c4b4da4b8c1fa52ed3fb33104959 598 Gene3D G3DSA:1.10.287.950 285 552 1.7E-50 T 13-10-2018 Trebr_1695 e42e69e20ad71e7f12f965e4555759db 166 Gene3D G3DSA:3.40.50.620 5 157 3.7E-18 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1695 e42e69e20ad71e7f12f965e4555759db 166 Pfam PF00582 Universal stress protein family 6 155 1.5E-11 T 13-10-2018 IPR006016 UspA Trebr_1695 e42e69e20ad71e7f12f965e4555759db 166 SUPERFAMILY SSF52402 6 157 4.19E-19 T 13-10-2018 Trebr_2240 9e0ab81555e81333ab5885a4f95fb165 436 SUPERFAMILY SSF53686 1 433 1.5E-67 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Trebr_2240 9e0ab81555e81333ab5885a4f95fb165 436 Gene3D G3DSA:3.90.1380.10 1 83 4.9E-11 T 13-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily Trebr_2240 9e0ab81555e81333ab5885a4f95fb165 436 Pfam PF14821 Threonine synthase N terminus 2 68 8.1E-10 T 13-10-2018 IPR029144 Threonine synthase, N-terminal Trebr_2240 9e0ab81555e81333ab5885a4f95fb165 436 Gene3D G3DSA:3.40.50.1100 88 401 7.2E-75 T 13-10-2018 Trebr_2240 9e0ab81555e81333ab5885a4f95fb165 436 Gene3D G3DSA:3.40.50.1100 103 408 7.2E-75 T 13-10-2018 Trebr_0292 ac6ec370e57d10396740d5d1f9649f8f 388 Gene3D G3DSA:3.40.50.2000 218 369 6.5E-15 T 13-10-2018 Trebr_0292 ac6ec370e57d10396740d5d1f9649f8f 388 SUPERFAMILY SSF53756 4 386 2.76E-13 T 13-10-2018 Trebr_0292 ac6ec370e57d10396740d5d1f9649f8f 388 Gene3D G3DSA:3.40.50.11010 1 217 4.1E-17 T 13-10-2018 Trebr_2019 ec016107c2b02b7cbefced24ae4c8ba9 427 Pfam PF13416 Bacterial extracellular solute-binding protein 55 362 1.5E-22 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_2019 ec016107c2b02b7cbefced24ae4c8ba9 427 SUPERFAMILY SSF53850 26 423 1.53E-45 T 13-10-2018 Trebr_2019 ec016107c2b02b7cbefced24ae4c8ba9 427 Gene3D G3DSA:3.40.190.10 55 386 8.7E-55 T 13-10-2018 Trebr_2019 ec016107c2b02b7cbefced24ae4c8ba9 427 Gene3D G3DSA:3.40.190.10 150 416 8.7E-55 T 13-10-2018 Trebr_0405 eea149fae908bbc3d199e55f9a6855f0 462 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 42 388 3.0E-12 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Trebr_0405 eea149fae908bbc3d199e55f9a6855f0 462 SUPERFAMILY SSF52540 10 401 1.39E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1389 fadec06d0c72359f9bef31f5b27cad17 428 SUPERFAMILY SSF51905 1 425 1.63E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_1389 fadec06d0c72359f9bef31f5b27cad17 428 Gene3D G3DSA:3.50.50.60 1 207 3.7E-5 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_0477 42d8bcf22e4b3dc299b1fd95d171a833 259 SUPERFAMILY SSF56219 3 256 4.58E-69 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Trebr_0477 42d8bcf22e4b3dc299b1fd95d171a833 259 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 29 38 - T 13-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Trebr_0477 42d8bcf22e4b3dc299b1fd95d171a833 259 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 193 208 - T 13-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 Trebr_0477 42d8bcf22e4b3dc299b1fd95d171a833 259 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 3 256 4.5E-82 T 13-10-2018 Trebr_0477 42d8bcf22e4b3dc299b1fd95d171a833 259 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 3 256 7.5E-92 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Trebr_0477 42d8bcf22e4b3dc299b1fd95d171a833 259 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 250 2.8E-18 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Trebr_0477 42d8bcf22e4b3dc299b1fd95d171a833 259 Gene3D G3DSA:3.60.10.10 2 258 9.7E-82 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Trebr_0886 e739fd37e79a3dccde369296517c4864 484 Pfam PF01336 OB-fold nucleic acid binding domain 20 90 2.5E-9 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 484 45.252 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 PRINTS PR01042 Aspartyl-tRNA synthetase signature 226 238 6.8E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 PRINTS PR01042 Aspartyl-tRNA synthetase signature 399 415 6.8E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 PRINTS PR01042 Aspartyl-tRNA synthetase signature 242 255 6.8E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 PRINTS PR01042 Aspartyl-tRNA synthetase signature 439 453 6.8E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 SUPERFAMILY SSF55681 102 480 1.91E-99 T 13-10-2018 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 7 484 5.3E-183 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 SUPERFAMILY SSF50249 10 109 7.28E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_0886 e739fd37e79a3dccde369296517c4864 484 Gene3D G3DSA:2.40.50.140 1 113 1.9E-17 T 13-10-2018 Trebr_0886 e739fd37e79a3dccde369296517c4864 484 Pfam PF00152 tRNA synthetases class II (D, K and N) 124 477 5.5E-82 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Trebr_1492 0522375e103c460764ca95d0aa705116 430 Gene3D G3DSA:3.40.50.150 66 254 2.9E-43 T 13-10-2018 Trebr_1492 0522375e103c460764ca95d0aa705116 430 SMART SM00138 2 262 5.3E-24 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_1492 0522375e103c460764ca95d0aa705116 430 Gene3D G3DSA:1.25.40.10 287 417 1.0E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1492 0522375e103c460764ca95d0aa705116 430 SUPERFAMILY SSF48452 334 399 1.14E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1492 0522375e103c460764ca95d0aa705116 430 Pfam PF01739 CheR methyltransferase, SAM binding domain 67 238 9.2E-36 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Trebr_1492 0522375e103c460764ca95d0aa705116 430 PRINTS PR00996 Glutamate methyltransferase family signature 95 115 4.2E-26 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_1492 0522375e103c460764ca95d0aa705116 430 PRINTS PR00996 Glutamate methyltransferase family signature 198 212 4.2E-26 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_1492 0522375e103c460764ca95d0aa705116 430 PRINTS PR00996 Glutamate methyltransferase family signature 217 240 4.2E-26 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_1492 0522375e103c460764ca95d0aa705116 430 PRINTS PR00996 Glutamate methyltransferase family signature 60 72 4.2E-26 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_1492 0522375e103c460764ca95d0aa705116 430 PRINTS PR00996 Glutamate methyltransferase family signature 125 141 4.2E-26 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Trebr_1492 0522375e103c460764ca95d0aa705116 430 SUPERFAMILY SSF53335 67 239 3.93E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_2464 23730ba4ec6b56b971cd88616ccacbf3 286 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 203 274 2.7E-12 T 13-10-2018 IPR006260 TonB/TolA, C-terminal Trebr_2464 23730ba4ec6b56b971cd88616ccacbf3 286 SUPERFAMILY SSF74653 177 276 8.89E-15 T 13-10-2018 Trebr_2464 23730ba4ec6b56b971cd88616ccacbf3 286 Gene3D G3DSA:3.30.1150.10 164 278 7.1E-19 T 13-10-2018 Trebr_2464 23730ba4ec6b56b971cd88616ccacbf3 286 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 201 276 1.9E-15 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 Trebr_2134 df88b617c87bdcdd627e72cb3cc0a357 254 Gene3D G3DSA:3.30.2350.10 1 228 1.8E-62 T 13-10-2018 Trebr_2134 df88b617c87bdcdd627e72cb3cc0a357 254 Pfam PF00849 RNA pseudouridylate synthase 16 162 3.3E-30 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_2134 df88b617c87bdcdd627e72cb3cc0a357 254 SUPERFAMILY SSF55120 9 237 8.64E-56 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Trebr_2345 2888c836d3aaef7e61881a0fdcbdb3c5 244 SUPERFAMILY SSF53335 9 234 7.91E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_2345 2888c836d3aaef7e61881a0fdcbdb3c5 244 Gene3D G3DSA:3.40.50.150 9 226 5.4E-24 T 13-10-2018 Trebr_2345 2888c836d3aaef7e61881a0fdcbdb3c5 244 Pfam PF13649 Methyltransferase domain 39 136 5.5E-10 T 13-10-2018 Trebr_2345 2888c836d3aaef7e61881a0fdcbdb3c5 244 Gene3D G3DSA:2.20.25.110 144 202 5.4E-24 T 13-10-2018 Trebr_1439 ea7ce91d69ca5a57a905c0e34d8c53af 526 SUPERFAMILY SSF159501 26 245 5.49E-10 T 13-10-2018 Trebr_0570 c095ae053d558e9e93c99aed64cd5af5 358 SUPERFAMILY SSF53822 40 295 3.67E-6 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0570 c095ae053d558e9e93c99aed64cd5af5 358 Gene3D G3DSA:3.40.50.2300 153 352 9.8E-106 T 13-10-2018 Trebr_0570 c095ae053d558e9e93c99aed64cd5af5 358 Gene3D G3DSA:3.40.50.2300 40 315 9.8E-106 T 13-10-2018 Trebr_0570 c095ae053d558e9e93c99aed64cd5af5 358 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 39 351 1.3E-64 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Trebr_2556 9fdf4148d401d188aefa0118b5373998 839 SUPERFAMILY SSF51126 499 781 3.88E-31 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor Trebr_2556 9fdf4148d401d188aefa0118b5373998 839 Pfam PF01095 Pectinesterase 509 679 2.1E-16 T 13-10-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 Trebr_2556 9fdf4148d401d188aefa0118b5373998 839 Gene3D G3DSA:2.160.20.10 514 777 2.4E-38 T 13-10-2018 IPR012334 Pectin lyase fold Trebr_2318 9248d51bc4eb1a3b8b949e4659114c90 330 Pfam PF03547 Membrane transport protein 8 134 2.1E-6 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Trebr_1125 cc56b2c39637b4459ced7fd21eb5b987 276 SUPERFAMILY SSF102114 25 185 4.84E-11 T 13-10-2018 Trebr_1125 cc56b2c39637b4459ced7fd21eb5b987 276 Pfam PF04055 Radical SAM superfamily 26 185 1.5E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Trebr_2581 241789f126264dc489f3aaafbe3e3bea 272 Pfam PF02677 Uncharacterized BCR, COG1636 44 264 3.0E-60 T 13-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 Trebr_2581 241789f126264dc489f3aaafbe3e3bea 272 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 44 266 32.806 T 13-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 Trebr_0740 178330a7e9689266c829a3060ad91f02 328 Gene3D G3DSA:3.90.550.10 2 169 3.6E-28 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0740 178330a7e9689266c829a3060ad91f02 328 Gene3D G3DSA:3.40.47.10 170 326 2.5E-40 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_0740 178330a7e9689266c829a3060ad91f02 328 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 238 326 6.2E-24 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Trebr_0740 178330a7e9689266c829a3060ad91f02 328 SUPERFAMILY SSF53448 12 153 1.77E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0740 178330a7e9689266c829a3060ad91f02 328 SUPERFAMILY SSF53901 171 326 6.2E-28 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 Trebr_0740 178330a7e9689266c829a3060ad91f02 328 Pfam PF00535 Glycosyl transferase family 2 15 140 1.3E-11 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_2517 cf0287b15a25306cb9ab3259dc5b3ae9 219 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 219 27.587 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_2517 cf0287b15a25306cb9ab3259dc5b3ae9 219 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 9 190 1.4E-49 T 13-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Trebr_2517 cf0287b15a25306cb9ab3259dc5b3ae9 219 Gene3D G3DSA:3.40.50.2020 1 197 2.1E-63 T 13-10-2018 Trebr_2517 cf0287b15a25306cb9ab3259dc5b3ae9 219 SUPERFAMILY SSF53271 3 195 9.34E-34 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like Trebr_2517 cf0287b15a25306cb9ab3259dc5b3ae9 219 Pfam PF00156 Phosphoribosyl transferase domain 46 141 3.3E-11 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Trebr_0584 456f3c2c0ddcd2a139ce5a0bdc98ab2c 230 Pfam PF10016 Predicted secreted protein (DUF2259) 39 228 3.3E-17 T 13-10-2018 IPR018725 Protein of unknown function DUF2259, secreted Trebr_2572 47519fc332d08d73bae56f021bdca8a2 448 Pfam PF02687 FtsX-like permease family 333 440 4.6E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_0481 38e14b9afc2f415b7eb2ff975bbe552b 282 Gene3D G3DSA:3.90.550.10 2 263 1.5E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0481 38e14b9afc2f415b7eb2ff975bbe552b 282 Pfam PF01501 Glycosyl transferase family 8 4 243 1.3E-15 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 Trebr_0481 38e14b9afc2f415b7eb2ff975bbe552b 282 SUPERFAMILY SSF53448 2 247 1.66E-35 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2294 f0cdeac39a9a4304c1824466bc74d79e 210 Gene3D G3DSA:3.40.1370.10 1 206 9.0E-70 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_2294 f0cdeac39a9a4304c1824466bc74d79e 210 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 202 1.3E-68 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2294 f0cdeac39a9a4304c1824466bc74d79e 210 SUPERFAMILY SSF52166 1 206 2.09E-70 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Trebr_2294 f0cdeac39a9a4304c1824466bc74d79e 210 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 31.104 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2294 f0cdeac39a9a4304c1824466bc74d79e 210 Pfam PF00573 Ribosomal protein L4/L1 family 16 202 2.7E-62 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 Trebr_0709 cf5438fce221e519fed7eafdbebbc8f1 328 Gene3D G3DSA:3.40.50.2300 152 323 2.5E-99 T 13-10-2018 Trebr_0709 cf5438fce221e519fed7eafdbebbc8f1 328 Pfam PF04392 ABC transporter substrate binding protein 38 324 6.7E-91 T 13-10-2018 IPR007487 ABC transporter, substrate-binding protein Trebr_0709 cf5438fce221e519fed7eafdbebbc8f1 328 Gene3D G3DSA:3.40.50.2300 56 302 2.5E-99 T 13-10-2018 Trebr_0709 cf5438fce221e519fed7eafdbebbc8f1 328 SUPERFAMILY SSF53822 37 255 7.07E-16 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_1840 5675585754a967bac9276f5ed4b4f8bd 556 TIGRFAM TIGR04321 spiroSPASM: spiro-SPASM protein 7 556 2.6E-143 T 13-10-2018 IPR027608 Spirochetes SPASM protein Trebr_1840 5675585754a967bac9276f5ed4b4f8bd 556 Pfam PF13186 Iron-sulfur cluster-binding domain 494 536 5.4E-6 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain Trebr_1840 5675585754a967bac9276f5ed4b4f8bd 556 SUPERFAMILY SSF102114 263 549 3.01E-21 T 13-10-2018 Trebr_0476 44128708de5567259b98fcada755fb80 269 Gene3D G3DSA:1.20.1540.10 13 208 2.7E-21 T 13-10-2018 IPR035952 Rhomboid-like superfamily Trebr_0476 44128708de5567259b98fcada755fb80 269 Pfam PF01694 Rhomboid family 66 200 1.7E-18 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 Trebr_0476 44128708de5567259b98fcada755fb80 269 SUPERFAMILY SSF144091 16 203 1.57E-25 T 13-10-2018 Trebr_1304 082a1fed846081ad40b6f22851449a45 338 Pfam PF13343 Bacterial extracellular solute-binding protein 81 301 2.7E-31 T 13-10-2018 Trebr_1304 082a1fed846081ad40b6f22851449a45 338 SUPERFAMILY SSF53850 33 335 7.65E-69 T 13-10-2018 Trebr_1304 082a1fed846081ad40b6f22851449a45 338 Gene3D G3DSA:3.40.190.10 36 306 1.5E-87 T 13-10-2018 Trebr_1304 082a1fed846081ad40b6f22851449a45 338 PIRSF PIRSF002825 1 338 5.0E-69 T 13-10-2018 IPR026045 Ferric binding protein Trebr_1304 082a1fed846081ad40b6f22851449a45 338 Gene3D G3DSA:3.40.190.10 134 320 1.5E-87 T 13-10-2018 Trebr_2543 291bc0c0735075e007bcee57aaac8eda 109 SUPERFAMILY SSF47413 2 66 9.85E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_2543 291bc0c0735075e007bcee57aaac8eda 109 Pfam PF01381 Helix-turn-helix 15 62 7.7E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2543 291bc0c0735075e007bcee57aaac8eda 109 SMART SM00530 6 62 1.4E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_2543 291bc0c0735075e007bcee57aaac8eda 109 Gene3D G3DSA:1.10.260.40 4 107 3.6E-9 T 13-10-2018 Trebr_0154 cee261d881728d74df09847a97c2f23f 299 SUPERFAMILY SSF53335 39 297 1.07E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0154 cee261d881728d74df09847a97c2f23f 299 Gene3D G3DSA:3.40.50.150 16 298 1.3E-69 T 13-10-2018 Trebr_0154 cee261d881728d74df09847a97c2f23f 299 Pfam PF08241 Methyltransferase domain 112 190 5.5E-11 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Trebr_2357 9c4116bd7cfa92f5592b9a9f2364fc5d 514 Pfam PF09243 Mitochondrial small ribosomal subunit Rsm22 251 349 1.4E-5 T 13-10-2018 IPR015324 Ribosomal protein Rsm22-like GO:0006412|GO:0008168 Trebr_2363 07142a1aef37bbb0bdfff7a0ef3a4ce2 317 SMART SM00563 77 222 0.0018 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Trebr_2363 07142a1aef37bbb0bdfff7a0ef3a4ce2 317 Gene3D G3DSA:3.40.1130.10 41 218 1.0E-8 T 13-10-2018 Trebr_2363 07142a1aef37bbb0bdfff7a0ef3a4ce2 317 Pfam PF01553 Acyltransferase 68 195 3.4E-6 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Trebr_2363 07142a1aef37bbb0bdfff7a0ef3a4ce2 317 SUPERFAMILY SSF69593 53 210 1.96E-24 T 13-10-2018 Trebr_0017 ac77a057793d25b89c1637352c0f1db9 468 Pfam PF02614 Glucuronate isomerase 1 466 1.4E-199 T 13-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 Trebr_0017 ac77a057793d25b89c1637352c0f1db9 468 Hamap MF_00675 Uronate isomerase [uxaC]. 2 468 45.347 T 13-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 Trebr_0017 ac77a057793d25b89c1637352c0f1db9 468 Gene3D G3DSA:1.10.2020.10 51 131 2.2E-40 T 13-10-2018 Trebr_0017 ac77a057793d25b89c1637352c0f1db9 468 SUPERFAMILY SSF51556 2 467 2.21E-164 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_0017 ac77a057793d25b89c1637352c0f1db9 468 Gene3D G3DSA:3.20.20.140 132 468 8.7E-135 T 13-10-2018 Trebr_0017 ac77a057793d25b89c1637352c0f1db9 468 Gene3D G3DSA:3.20.20.140 1 50 5.3E-14 T 13-10-2018 Trebr_1357 631fe2092b2041bdd0e0ff25002988b4 166 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 155 1.2E-14 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Trebr_1357 631fe2092b2041bdd0e0ff25002988b4 166 Pfam PF04093 rod shape-determining protein MreD 9 156 7.2E-11 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Trebr_1196 0a1438e30c224923d008cbb05fa7d305 706 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 150 680 1.0E-171 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Trebr_1196 0a1438e30c224923d008cbb05fa7d305 706 Pfam PF03477 ATP cone domain 28 121 3.6E-18 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Trebr_1196 0a1438e30c224923d008cbb05fa7d305 706 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 149 679 1.4E-145 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Trebr_1196 0a1438e30c224923d008cbb05fa7d305 706 SUPERFAMILY SSF51998 151 684 1.22E-150 T 13-10-2018 Trebr_1196 0a1438e30c224923d008cbb05fa7d305 706 Gene3D G3DSA:3.20.70.20 165 690 2.8E-114 T 13-10-2018 Trebr_0337 33a54edc401ff65aa211f4f2514fefa3 410 SUPERFAMILY SSF53822 102 260 1.29E-5 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_0337 33a54edc401ff65aa211f4f2514fefa3 410 Gene3D G3DSA:3.40.50.11400 38 153 7.1E-80 T 13-10-2018 Trebr_0337 33a54edc401ff65aa211f4f2514fefa3 410 Pfam PF12683 Protein of unknown function (DUF3798) 38 313 1.8E-130 T 13-10-2018 IPR024258 Protein of unknown function DUF3798 Trebr_0337 33a54edc401ff65aa211f4f2514fefa3 410 Gene3D G3DSA:3.40.50.11390 154 303 7.1E-80 T 13-10-2018 Trebr_0155 4389cfb5e3ce2900258f6b5426c1c239 93 SUPERFAMILY SSF46689 2 86 3.05E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_1991 4cb1263526df6b693c6180f3d1d579a8 181 PIRSF PIRSF006181 21 181 6.1E-48 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Trebr_1991 4cb1263526df6b693c6180f3d1d579a8 181 SUPERFAMILY SSF55826 26 180 2.35E-32 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Trebr_1991 4cb1263526df6b693c6180f3d1d579a8 181 Gene3D G3DSA:3.90.960.10 18 181 1.1E-45 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Trebr_1991 4cb1263526df6b693c6180f3d1d579a8 181 Pfam PF04073 Aminoacyl-tRNA editing domain 60 169 5.1E-21 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Trebr_1223 f105a2da9b5367be805a902a480f2eef 424 Gene3D G3DSA:3.40.50.1980 163 267 1.1E-10 T 13-10-2018 Trebr_1223 f105a2da9b5367be805a902a480f2eef 424 SUPERFAMILY SSF53807 24 410 3.6E-27 T 13-10-2018 Trebr_1223 f105a2da9b5367be805a902a480f2eef 424 Gene3D G3DSA:3.40.50.1980 23 142 7.0E-10 T 13-10-2018 Trebr_1223 f105a2da9b5367be805a902a480f2eef 424 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 62 344 1.2E-17 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Trebr_0035 d9bcd2fe3d26c141942f026b67c3ec96 152 Gene3D G3DSA:1.10.10.10 1 142 3.4E-47 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0035 d9bcd2fe3d26c141942f026b67c3ec96 152 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site Trebr_0035 d9bcd2fe3d26c141942f026b67c3ec96 152 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 132 4.4E-38 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type Trebr_0035 d9bcd2fe3d26c141942f026b67c3ec96 152 Pfam PF02082 Transcriptional regulator 1 82 3.2E-25 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type Trebr_0035 d9bcd2fe3d26c141942f026b67c3ec96 152 SUPERFAMILY SSF46785 2 134 4.08E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 4.1E-71 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 Gene3D G3DSA:2.40.50.140 1 124 4.4E-65 T 13-10-2018 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 3.3E-43 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 PIRSF PIRSF002133 1 124 1.5E-55 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 40.606 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 SUPERFAMILY SSF50249 2 123 2.06E-53 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.3E-61 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 2.3E-61 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 2.3E-61 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.3E-61 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 2.3E-61 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_2299 26ceb5295d399504f6eaa1e47ed53830 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 2.3E-61 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Trebr_1258 9325fc250a3a98896135213b744d3452 350 Gene3D G3DSA:3.40.640.10 2 218 2.2E-19 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1258 9325fc250a3a98896135213b744d3452 350 SUPERFAMILY SSF53383 6 298 1.86E-29 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1258 9325fc250a3a98896135213b744d3452 350 Gene3D G3DSA:3.90.1150.10 222 349 1.9E-7 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_1258 9325fc250a3a98896135213b744d3452 350 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 220 344 2.3E-4 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_1258 9325fc250a3a98896135213b744d3452 350 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 10 197 7.5E-16 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Trebr_1810 87a5274cb93edd2cac221eb196d564ea 362 Pfam PF00534 Glycosyl transferases group 1 181 335 5.3E-34 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_1810 87a5274cb93edd2cac221eb196d564ea 362 Gene3D G3DSA:3.40.50.2000 16 351 1.8E-49 T 13-10-2018 Trebr_1810 87a5274cb93edd2cac221eb196d564ea 362 Gene3D G3DSA:3.40.50.2000 170 341 1.8E-49 T 13-10-2018 Trebr_1810 87a5274cb93edd2cac221eb196d564ea 362 SUPERFAMILY SSF53756 3 354 2.11E-55 T 13-10-2018 Trebr_0551 bf8801445e27624ed901e77eb528dbea 434 Pfam PF08239 Bacterial SH3 domain 107 170 2.3E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type Trebr_0551 bf8801445e27624ed901e77eb528dbea 434 Gene3D G3DSA:2.30.30.40 91 171 7.8E-7 T 13-10-2018 Trebr_1273 a7371bf95485d4801f1a0ac352924885 399 Pfam PF13308 YARHG domain 323 396 2.6E-17 T 13-10-2018 IPR025582 YARHG domain Trebr_1273 a7371bf95485d4801f1a0ac352924885 399 SMART SM01324 315 396 4.1E-12 T 13-10-2018 IPR025582 YARHG domain Trebr_1273 a7371bf95485d4801f1a0ac352924885 399 Gene3D G3DSA:1.20.58.1690 313 395 1.2E-17 T 13-10-2018 IPR038434 YARHG domain superfamily Trebr_0916 6064d11d560168f31fc88e1dc406f516 209 Pfam PF13599 Pentapeptide repeats (9 copies) 149 204 1.8E-8 T 13-10-2018 IPR001646 Pentapeptide repeat Trebr_0916 6064d11d560168f31fc88e1dc406f516 209 SUPERFAMILY SSF141571 56 203 1.7E-22 T 13-10-2018 Trebr_0916 6064d11d560168f31fc88e1dc406f516 209 Gene3D G3DSA:2.160.20.100 34 206 1.6E-22 T 13-10-2018 Trebr_0916 6064d11d560168f31fc88e1dc406f516 209 Pfam PF00805 Pentapeptide repeats (8 copies) 107 137 0.0042 T 13-10-2018 IPR001646 Pentapeptide repeat Trebr_1948 476b3b1b3899dfa18fdb4e6279e516fa 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 4.2E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_1948 476b3b1b3899dfa18fdb4e6279e516fa 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 4.2E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_1948 476b3b1b3899dfa18fdb4e6279e516fa 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 4.2E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Trebr_1948 476b3b1b3899dfa18fdb4e6279e516fa 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 190 5.1E-19 T 13-10-2018 Trebr_1948 476b3b1b3899dfa18fdb4e6279e516fa 223 Gene3D G3DSA:3.40.50.1000 7 193 3.9E-28 T 13-10-2018 IPR023214 HAD superfamily Trebr_1948 476b3b1b3899dfa18fdb4e6279e516fa 223 SUPERFAMILY SSF56784 5 221 1.89E-31 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_1948 476b3b1b3899dfa18fdb4e6279e516fa 223 Gene3D G3DSA:1.10.150.520 19 95 3.9E-28 T 13-10-2018 Trebr_0287 545c49240f6a7d74ccb501d7ab430794 303 Pfam PF14393 Domain of unknown function (DUF4422) 12 249 2.4E-75 T 13-10-2018 IPR025536 Domain of unknown function DUF4422 Trebr_1314 31fbd3ec3daf640ff1a0d4215da0acd2 238 Pfam PF02592 Putative vitamin uptake transporter 53 212 4.5E-47 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Trebr_1314 31fbd3ec3daf640ff1a0d4215da0acd2 238 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 29 217 9.4E-36 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Trebr_1314 31fbd3ec3daf640ff1a0d4215da0acd2 238 Hamap MF_02088 Probable queuosine precursor transporter. 19 224 17.448 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Trebr_1355 7c8f9a5f9053c41d45e99578ff963c32 437 Pfam PF01098 Cell cycle protein 237 431 9.4E-56 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_1355 7c8f9a5f9053c41d45e99578ff963c32 437 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 10 432 2.0E-120 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_1355 7c8f9a5f9053c41d45e99578ff963c32 437 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 390 414 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_1355 7c8f9a5f9053c41d45e99578ff963c32 437 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 4 435 25.381 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_1387 09de17e1eb77911ee09683b0e7373017 294 Gene3D G3DSA:3.40.50.300 9 210 1.4E-5 T 13-10-2018 Trebr_1387 09de17e1eb77911ee09683b0e7373017 294 SUPERFAMILY SSF52540 16 142 9.4E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1562 641bae197c5c13270b58209172101980 265 Gene3D G3DSA:3.40.50.720 1 264 1.3E-64 T 13-10-2018 Trebr_1562 641bae197c5c13270b58209172101980 265 SUPERFAMILY SSF51735 2 262 2.47E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 6.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 6.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 6.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 2.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 159 2.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 2.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 2.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Trebr_1562 641bae197c5c13270b58209172101980 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Trebr_1562 641bae197c5c13270b58209172101980 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 261 5.5E-45 T 13-10-2018 Trebr_0053 4635cbaf1ae22b9e2eaa197e0c723e8a 347 Gene3D G3DSA:3.40.50.720 101 316 7.2E-101 T 13-10-2018 Trebr_0053 4635cbaf1ae22b9e2eaa197e0c723e8a 347 Gene3D G3DSA:3.40.50.720 5 340 7.2E-101 T 13-10-2018 Trebr_0053 4635cbaf1ae22b9e2eaa197e0c723e8a 347 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 11 343 1.3E-22 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Trebr_0053 4635cbaf1ae22b9e2eaa197e0c723e8a 347 SUPERFAMILY SSF52283 3 135 1.15E-25 T 13-10-2018 Trebr_0053 4635cbaf1ae22b9e2eaa197e0c723e8a 347 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 253 269 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Trebr_0053 4635cbaf1ae22b9e2eaa197e0c723e8a 347 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 315 9.8E-59 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Trebr_0053 4635cbaf1ae22b9e2eaa197e0c723e8a 347 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 175 202 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Trebr_0053 4635cbaf1ae22b9e2eaa197e0c723e8a 347 SUPERFAMILY SSF51735 106 315 8.45E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0133 8a83f774f3ccf182babbb702bec3b4c2 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 321 5.1E-38 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_1514 9b7a0cc85f304d3c09a3346a582d51f2 367 Gene3D G3DSA:3.90.550.10 4 366 2.9E-90 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1514 9b7a0cc85f304d3c09a3346a582d51f2 367 SUPERFAMILY SSF53448 2 303 2.09E-55 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1514 9b7a0cc85f304d3c09a3346a582d51f2 367 SUPERFAMILY SSF159283 313 363 2.35E-6 T 13-10-2018 Trebr_1514 9b7a0cc85f304d3c09a3346a582d51f2 367 Pfam PF00483 Nucleotidyl transferase 5 305 8.2E-42 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Trebr_0269 80ad59f4c6ada8277981af475f366b47 203 Pfam PF04011 LemA family 12 202 1.5E-70 T 13-10-2018 IPR007156 LemA Trebr_0269 80ad59f4c6ada8277981af475f366b47 203 SUPERFAMILY SSF140478 33 191 4.32E-55 T 13-10-2018 IPR023353 LemA-like domain superfamily Trebr_0269 80ad59f4c6ada8277981af475f366b47 203 Gene3D G3DSA:1.20.1440.20 22 202 5.0E-67 T 13-10-2018 IPR023353 LemA-like domain superfamily Trebr_0690 9ef0ec1965902ac4db984556c7d1774d 423 SMART SM01230 104 347 1.3E-98 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Trebr_0690 9ef0ec1965902ac4db984556c7d1774d 423 SUPERFAMILY SSF54368 5 103 3.53E-24 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Trebr_0690 9ef0ec1965902ac4db984556c7d1774d 423 Pfam PF00120 Glutamine synthetase, catalytic domain 105 413 3.2E-94 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Trebr_0690 9ef0ec1965902ac4db984556c7d1774d 423 Gene3D G3DSA:3.10.20.70 1 106 9.6E-33 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Trebr_0690 9ef0ec1965902ac4db984556c7d1774d 423 Gene3D G3DSA:3.30.590.10 108 415 1.2E-97 T 13-10-2018 Trebr_0690 9ef0ec1965902ac4db984556c7d1774d 423 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 96 5.2E-21 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Trebr_0690 9ef0ec1965902ac4db984556c7d1774d 423 SUPERFAMILY SSF55931 105 412 5.0E-95 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Trebr_0194 a4fe4767a3a26c14a02a867d35beed0e 122 Pfam PF00072 Response regulator receiver domain 4 113 1.4E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0194 a4fe4767a3a26c14a02a867d35beed0e 122 Gene3D G3DSA:3.40.50.2300 1 121 2.8E-34 T 13-10-2018 Trebr_0194 a4fe4767a3a26c14a02a867d35beed0e 122 SMART SM00448 1 113 3.6E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0194 a4fe4767a3a26c14a02a867d35beed0e 122 SUPERFAMILY SSF52172 1 118 6.83E-34 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0263 36855fca1f3eaba3f0bfcf10b2617ea6 131 SUPERFAMILY SSF102546 1 130 8.89E-38 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 Trebr_0263 36855fca1f3eaba3f0bfcf10b2617ea6 131 Pfam PF05025 RbsD / FucU transport protein family 1 129 2.2E-41 T 13-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 Trebr_0263 36855fca1f3eaba3f0bfcf10b2617ea6 131 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 131 28.035 T 13-10-2018 IPR023064 D-ribose pyranase GO:0016872 Trebr_0263 36855fca1f3eaba3f0bfcf10b2617ea6 131 Gene3D G3DSA:3.40.1650.10 8 128 2.0E-33 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 Trebr_0687 9a676750d26891d9e38c214cd8625ef0 460 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 239 446 8.0E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0687 9a676750d26891d9e38c214cd8625ef0 460 SUPERFAMILY SSF161098 196 442 1.83E-49 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0687 9a676750d26891d9e38c214cd8625ef0 460 SUPERFAMILY SSF160964 94 200 3.01E-12 T 13-10-2018 Trebr_0687 9a676750d26891d9e38c214cd8625ef0 460 Gene3D G3DSA:1.10.3720.10 192 459 6.9E-63 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0808 8645f3bea40432f0052acc594ae173e6 264 SUPERFAMILY SSF53448 2 256 1.31E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0808 8645f3bea40432f0052acc594ae173e6 264 Gene3D G3DSA:3.90.550.10 2 257 1.5E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0808 8645f3bea40432f0052acc594ae173e6 264 Pfam PF00483 Nucleotidyl transferase 3 200 1.6E-19 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Trebr_0808 8645f3bea40432f0052acc594ae173e6 264 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 2 256 1.2E-109 T 13-10-2018 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940 Trebr_2233 9a4cc55283dfc602d45b94597f2de2a8 413 Pfam PF00872 Transposase, Mutator family 16 387 5.3E-67 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Trebr_1335 9a4cc55283dfc602d45b94597f2de2a8 413 Pfam PF00872 Transposase, Mutator family 16 387 5.3E-67 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Trebr_1330 9a4cc55283dfc602d45b94597f2de2a8 413 Pfam PF00872 Transposase, Mutator family 16 387 5.3E-67 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Trebr_1130 9a4cc55283dfc602d45b94597f2de2a8 413 Pfam PF00872 Transposase, Mutator family 16 387 5.3E-67 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Trebr_1978 9a4cc55283dfc602d45b94597f2de2a8 413 Pfam PF00872 Transposase, Mutator family 16 387 5.3E-67 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Trebr_1007 9a4cc55283dfc602d45b94597f2de2a8 413 Pfam PF00872 Transposase, Mutator family 16 387 5.3E-67 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Trebr_1804 9a4cc55283dfc602d45b94597f2de2a8 413 Pfam PF00872 Transposase, Mutator family 16 387 5.3E-67 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Trebr_1069 9a4cc55283dfc602d45b94597f2de2a8 413 Pfam PF00872 Transposase, Mutator family 16 387 5.3E-67 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 Trebr_0425 7b2618319cee95ea838491d6d73b31ba 339 SUPERFAMILY SSF53613 8 333 3.12E-75 T 13-10-2018 IPR029056 Ribokinase-like Trebr_0425 7b2618319cee95ea838491d6d73b31ba 339 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 263 276 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Trebr_0425 7b2618319cee95ea838491d6d73b31ba 339 Pfam PF00294 pfkB family carbohydrate kinase 11 325 1.1E-65 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB Trebr_0425 7b2618319cee95ea838491d6d73b31ba 339 PRINTS PR00990 Ribokinase signature 232 243 3.9E-10 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0425 7b2618319cee95ea838491d6d73b31ba 339 PRINTS PR00990 Ribokinase signature 34 53 3.9E-10 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0425 7b2618319cee95ea838491d6d73b31ba 339 PRINTS PR00990 Ribokinase signature 189 204 3.9E-10 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_0425 7b2618319cee95ea838491d6d73b31ba 339 Gene3D G3DSA:3.40.1190.20 8 337 1.5E-91 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2382 06a948d90b04001c6b847e2c7d8e530b 719 Gene3D G3DSA:1.10.530.10 554 715 2.8E-39 T 13-10-2018 Trebr_2382 06a948d90b04001c6b847e2c7d8e530b 719 Pfam PF01464 Transglycosylase SLT domain 565 670 4.7E-25 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 Trebr_2382 06a948d90b04001c6b847e2c7d8e530b 719 SUPERFAMILY SSF53955 560 704 3.54E-39 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily Trebr_1213 55f98da5738e23bc7c7f8ae12a172e42 336 Pfam PF01551 Peptidase family M23 228 322 9.7E-31 T 13-10-2018 IPR016047 Peptidase M23 Trebr_1213 55f98da5738e23bc7c7f8ae12a172e42 336 Gene3D G3DSA:2.70.70.10 172 329 3.7E-41 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_1213 55f98da5738e23bc7c7f8ae12a172e42 336 SUPERFAMILY SSF51261 123 323 1.46E-46 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_0429 3a7b85ce3c15e443d57af3b70efb1ee1 447 SUPERFAMILY SSF53850 28 444 9.78E-55 T 13-10-2018 Trebr_0429 3a7b85ce3c15e443d57af3b70efb1ee1 447 Gene3D G3DSA:3.40.190.10 154 432 2.0E-73 T 13-10-2018 Trebr_0429 3a7b85ce3c15e443d57af3b70efb1ee1 447 Pfam PF13416 Bacterial extracellular solute-binding protein 56 373 1.4E-30 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0429 3a7b85ce3c15e443d57af3b70efb1ee1 447 Gene3D G3DSA:3.40.190.10 57 403 2.0E-73 T 13-10-2018 Trebr_0774 4bb5e2f15d7e2d7640e7a5249de3cc0b 358 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 53 296 1.9E-11 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Trebr_0774 4bb5e2f15d7e2d7640e7a5249de3cc0b 358 Gene3D G3DSA:3.60.10.10 49 353 9.7E-33 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Trebr_0774 4bb5e2f15d7e2d7640e7a5249de3cc0b 358 SUPERFAMILY SSF56219 50 347 2.88E-32 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Trebr_0147 b4a2a81aaa77415690cd16560e8e36b0 82 SUPERFAMILY SSF89447 1 62 2.09E-12 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily Trebr_0147 b4a2a81aaa77415690cd16560e8e36b0 82 Gene3D G3DSA:2.10.260.10 2 78 9.5E-11 T 13-10-2018 Trebr_0147 b4a2a81aaa77415690cd16560e8e36b0 82 SMART SM00966 6 49 1.3E-7 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Trebr_0147 b4a2a81aaa77415690cd16560e8e36b0 82 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 48 4.9E-7 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 Trebr_1525 dd5c1caf7cdc83f6fc763e793e828ce7 215 Pfam PF13432 Tetratricopeptide repeat 57 113 1.1E-4 T 13-10-2018 Trebr_1525 dd5c1caf7cdc83f6fc763e793e828ce7 215 Pfam PF13432 Tetratricopeptide repeat 120 180 0.0012 T 13-10-2018 Trebr_1525 dd5c1caf7cdc83f6fc763e793e828ce7 215 Gene3D G3DSA:1.25.40.10 36 114 7.2E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1525 dd5c1caf7cdc83f6fc763e793e828ce7 215 SUPERFAMILY SSF48452 43 170 4.17E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1525 dd5c1caf7cdc83f6fc763e793e828ce7 215 Gene3D G3DSA:1.25.40.10 120 196 1.5E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1525 dd5c1caf7cdc83f6fc763e793e828ce7 215 SMART SM00028 114 147 53.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1525 dd5c1caf7cdc83f6fc763e793e828ce7 215 SMART SM00028 46 79 15.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1525 dd5c1caf7cdc83f6fc763e793e828ce7 215 SMART SM00028 80 113 2.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_0200 b0379ab7b7d814b4dbc383a3dc8cd630 344 Pfam PF01757 Acyltransferase family 7 333 1.7E-23 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Trebr_1164 e8fcd033795d2c53a9cd6ace29b65beb 283 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 26 280 3.2E-91 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 Trebr_1164 e8fcd033795d2c53a9cd6ace29b65beb 283 Pfam PF00809 Pterin binding enzyme 27 266 9.1E-72 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_1164 e8fcd033795d2c53a9cd6ace29b65beb 283 Gene3D G3DSA:3.20.20.20 14 283 1.7E-94 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_1164 e8fcd033795d2c53a9cd6ace29b65beb 283 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 59 72 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_1164 e8fcd033795d2c53a9cd6ace29b65beb 283 SUPERFAMILY SSF51717 19 283 1.27E-86 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Trebr_1724 23dab54fd11866cbbece0eec96f9207f 257 Hamap MF_01805 Segregation and condensation protein A [scpA]. 19 255 19.467 T 13-10-2018 IPR003768 Segregation and condensation protein A Trebr_1724 23dab54fd11866cbbece0eec96f9207f 257 Pfam PF02616 Segregation and condensation protein ScpA 36 252 2.1E-25 T 13-10-2018 IPR003768 Segregation and condensation protein A Trebr_0636 0eb5e58af5a87ce7ea5d76960f2aafcb 202 Gene3D G3DSA:1.10.10.10 110 153 1.4E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0636 0eb5e58af5a87ce7ea5d76960f2aafcb 202 Pfam PF02631 RecX family 85 199 2.4E-19 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 Trebr_0469 e825976e3ec0815b98883c9fa35280c5 473 Pfam PF12010 Domain of unknown function (DUF3502) 347 472 1.1E-34 T 13-10-2018 IPR022627 Domain of unknown function DUF3502 Trebr_0469 e825976e3ec0815b98883c9fa35280c5 473 Pfam PF13416 Bacterial extracellular solute-binding protein 59 257 3.7E-9 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0469 e825976e3ec0815b98883c9fa35280c5 473 SUPERFAMILY SSF53850 29 472 2.17E-61 T 13-10-2018 Trebr_2040 3eeaa5476a504a42b73d4b7a11d9605a 94 SUPERFAMILY SSF46785 2 79 6.61E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_2040 3eeaa5476a504a42b73d4b7a11d9605a 94 Gene3D G3DSA:1.10.10.10 1 92 2.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2040 3eeaa5476a504a42b73d4b7a11d9605a 94 Pfam PF01022 Bacterial regulatory protein, arsR family 10 55 2.6E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2040 3eeaa5476a504a42b73d4b7a11d9605a 94 SMART SM00418 3 81 2.7E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2040 3eeaa5476a504a42b73d4b7a11d9605a 94 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 37 52 1.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2040 3eeaa5476a504a42b73d4b7a11d9605a 94 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 1.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_2040 3eeaa5476a504a42b73d4b7a11d9605a 94 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 5 20 1.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Trebr_1811 320de81205fed295c4f384d91da62280 366 Pfam PF04230 Polysaccharide pyruvyl transferase 13 305 4.4E-19 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase Trebr_0325 c41cd1bdef2948b314a31c9c5bc5bc69 276 SUPERFAMILY SSF161098 3 276 1.44E-70 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0325 c41cd1bdef2948b314a31c9c5bc5bc69 276 Gene3D G3DSA:1.10.3720.10 1 267 1.8E-62 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0325 c41cd1bdef2948b314a31c9c5bc5bc69 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 266 8.0E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2536 58ec286e95bc04ebbee8b1a303cc7a14 277 SUPERFAMILY SSF53474 39 250 2.03E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2536 58ec286e95bc04ebbee8b1a303cc7a14 277 Pfam PF07859 alpha/beta hydrolase fold 51 244 2.3E-15 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 Trebr_2536 58ec286e95bc04ebbee8b1a303cc7a14 277 Gene3D G3DSA:3.40.50.1820 13 277 1.5E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_0930 074c4610198a9e57a13b2fe43cfcd5b3 529 Pfam PF10531 SLBB domain 238 283 9.1E-7 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0930 074c4610198a9e57a13b2fe43cfcd5b3 529 Pfam PF10531 SLBB domain 431 471 0.013 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Trebr_0930 074c4610198a9e57a13b2fe43cfcd5b3 529 Gene3D G3DSA:3.10.560.10 233 317 6.0E-12 T 13-10-2018 Trebr_0930 074c4610198a9e57a13b2fe43cfcd5b3 529 Gene3D G3DSA:3.10.560.10 428 500 2.5E-5 T 13-10-2018 Trebr_0930 074c4610198a9e57a13b2fe43cfcd5b3 529 Gene3D G3DSA:3.10.560.10 150 232 3.4E-8 T 13-10-2018 Trebr_1921 75ce643c49e547ccc56a0b0e78d83f5c 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 284 6.2E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1921 75ce643c49e547ccc56a0b0e78d83f5c 291 SUPERFAMILY SSF161098 58 281 2.75E-52 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1921 75ce643c49e547ccc56a0b0e78d83f5c 291 Gene3D G3DSA:1.10.3720.10 54 289 6.7E-60 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0171 3cda7a4ddc0c9a96ff9da1e8c017b62f 244 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 63 86 1.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_0171 3cda7a4ddc0c9a96ff9da1e8c017b62f 244 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 55 1.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_0171 3cda7a4ddc0c9a96ff9da1e8c017b62f 244 SUPERFAMILY SSF46689 37 98 6.48E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0171 3cda7a4ddc0c9a96ff9da1e8c017b62f 244 Pfam PF00440 Bacterial regulatory proteins, tetR family 42 86 6.5E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_0171 3cda7a4ddc0c9a96ff9da1e8c017b62f 244 Gene3D G3DSA:1.10.357.10 28 241 5.9E-41 T 13-10-2018 Trebr_2343 855f3d16b125a336f5389f5384b270a5 177 SUPERFAMILY SSF158397 67 176 6.54E-18 T 13-10-2018 IPR024042 TM1646-like domain superfamily Trebr_2343 855f3d16b125a336f5389f5384b270a5 177 Gene3D G3DSA:1.20.120.490 62 177 3.6E-22 T 13-10-2018 IPR024042 TM1646-like domain superfamily Trebr_2343 855f3d16b125a336f5389f5384b270a5 177 Pfam PF03885 Protein of unknown function (DUF327) 28 175 2.3E-26 T 13-10-2018 IPR005585 Protein of unknown function DUF327 Trebr_0543 1ee50fe9161f815574d676403433ca59 328 Gene3D G3DSA:3.40.50.2300 59 305 1.9E-17 T 13-10-2018 Trebr_0543 1ee50fe9161f815574d676403433ca59 328 Pfam PF13407 Periplasmic binding protein domain 57 303 3.3E-13 T 13-10-2018 IPR025997 Periplasmic binding protein Trebr_0543 1ee50fe9161f815574d676403433ca59 328 Gene3D G3DSA:3.40.50.2300 154 288 1.9E-17 T 13-10-2018 Trebr_0543 1ee50fe9161f815574d676403433ca59 328 SUPERFAMILY SSF53822 59 309 8.24E-14 T 13-10-2018 IPR028082 Periplasmic binding protein-like I Trebr_2554 709b1b792513389969a8dba7509740da 242 Pfam PF12103 Surface lipoprotein of Spirochaetales order 45 224 2.6E-85 T 13-10-2018 IPR021962 Surface lipoprotein of Spirochaetales order Trebr_2257 1815b838f94e8061075995c97929cbf8 325 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 158 170 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Trebr_2257 1815b838f94e8061075995c97929cbf8 325 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 2 316 6.4E-69 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Trebr_2257 1815b838f94e8061075995c97929cbf8 325 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 319 17.658 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Trebr_2257 1815b838f94e8061075995c97929cbf8 325 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 26 313 5.8E-57 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Trebr_0420 5b5abe5364f4a4221975d44048fe4455 412 SUPERFAMILY SSF53067 95 206 5.29E-20 T 13-10-2018 Trebr_0420 5b5abe5364f4a4221975d44048fe4455 412 Pfam PF00480 ROK family 97 224 5.8E-16 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Trebr_0420 5b5abe5364f4a4221975d44048fe4455 412 Gene3D G3DSA:3.30.420.40 96 213 3.1E-23 T 13-10-2018 Trebr_0420 5b5abe5364f4a4221975d44048fe4455 412 Gene3D G3DSA:3.30.420.40 214 328 3.1E-23 T 13-10-2018 Trebr_0420 5b5abe5364f4a4221975d44048fe4455 412 SUPERFAMILY SSF53067 96 367 9.79E-10 T 13-10-2018 Trebr_0420 5b5abe5364f4a4221975d44048fe4455 412 SUPERFAMILY SSF46785 21 86 1.34E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0420 5b5abe5364f4a4221975d44048fe4455 412 Gene3D G3DSA:1.10.10.10 22 90 3.5E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2160 541bc95baa78c4bdd7f6fd1af47a01ad 594 Gene3D G3DSA:3.50.50.60 530 593 7.4E-12 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2160 541bc95baa78c4bdd7f6fd1af47a01ad 594 Pfam PF01494 FAD binding domain 89 124 9.0E-7 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 Trebr_2160 541bc95baa78c4bdd7f6fd1af47a01ad 594 PIRSF PIRSF038984 1 254 1.9E-57 T 13-10-2018 IPR028348 FAD dependent protein Trebr_2160 541bc95baa78c4bdd7f6fd1af47a01ad 594 PIRSF PIRSF038984 278 594 1.5E-106 T 13-10-2018 IPR028348 FAD dependent protein Trebr_2160 541bc95baa78c4bdd7f6fd1af47a01ad 594 SUPERFAMILY SSF51905 89 589 2.04E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Trebr_2541 746f1d169214ff04eee54bd598076c2a 291 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 286 1.9E-26 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_2541 746f1d169214ff04eee54bd598076c2a 291 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 1.6E-12 T 13-10-2018 Trebr_1958 d361da4e0617aa9c09f23799e3468eb6 563 Gene3D G3DSA:3.30.70.1230 282 503 2.3E-41 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1958 d361da4e0617aa9c09f23799e3468eb6 563 SUPERFAMILY SSF55073 287 495 1.73E-36 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1958 d361da4e0617aa9c09f23799e3468eb6 563 SMART SM00044 217 476 0.0027 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_1958 d361da4e0617aa9c09f23799e3468eb6 563 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 293 493 3.4E-21 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Trebr_0388 a34cd3fb06e0df949e7e4a7db774d5f7 140 SUPERFAMILY SSF46785 6 130 1.52E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_0388 a34cd3fb06e0df949e7e4a7db774d5f7 140 Pfam PF02082 Transcriptional regulator 2 76 4.9E-17 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type Trebr_0388 a34cd3fb06e0df949e7e4a7db774d5f7 140 Gene3D G3DSA:1.10.10.10 1 138 1.6E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_0597 df7f2543a0059cc4f059c7d29d6cd09a 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 292 1.4E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0597 df7f2543a0059cc4f059c7d29d6cd09a 317 Gene3D G3DSA:1.10.3720.10 35 305 1.9E-45 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0597 df7f2543a0059cc4f059c7d29d6cd09a 317 SUPERFAMILY SSF161098 45 295 1.59E-50 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1193 10e58bff750eba8f0fe61f95a6c98c82 482 TIGRFAM TIGR03022 WbaP_sugtrans: undecaprenyl-phosphate galactose phosphotransferase WbaP 26 482 7.5E-131 T 13-10-2018 IPR017472 Undecaprenyl-phosphate galactose phosphotransferase, WbaP GO:0000271|GO:0005886|GO:0016021|GO:0016740 Trebr_1193 10e58bff750eba8f0fe61f95a6c98c82 482 Gene3D G3DSA:3.40.50.720 151 267 4.7E-8 T 13-10-2018 Trebr_1193 10e58bff750eba8f0fe61f95a6c98c82 482 Pfam PF02397 Bacterial sugar transferase 285 476 1.0E-62 T 13-10-2018 IPR003362 Bacterial sugar transferase Trebr_1193 10e58bff750eba8f0fe61f95a6c98c82 482 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 29 482 8.0E-106 T 13-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase Trebr_0501 95cdeb9c0ad027c56e7f6334a8aefce4 89 Hamap MF_01054 UPF0237 protein . 1 89 25.066 T 13-10-2018 IPR022986 Uncharacterised protein family UPF0237, ACT-type Trebr_0501 95cdeb9c0ad027c56e7f6334a8aefce4 89 Pfam PF13740 ACT domain 4 76 4.9E-14 T 13-10-2018 Trebr_0501 95cdeb9c0ad027c56e7f6334a8aefce4 89 SUPERFAMILY SSF55021 2 82 4.58E-22 T 13-10-2018 Trebr_0501 95cdeb9c0ad027c56e7f6334a8aefce4 89 Gene3D G3DSA:3.30.70.260 1 89 3.1E-29 T 13-10-2018 Trebr_2181 0edb20c24179d4f79142ee2fc9e8cbe5 179 Pfam PF03358 NADPH-dependent FMN reductase 1 122 2.1E-16 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Trebr_2181 0edb20c24179d4f79142ee2fc9e8cbe5 179 Gene3D G3DSA:3.40.50.360 2 179 1.9E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_2181 0edb20c24179d4f79142ee2fc9e8cbe5 179 SUPERFAMILY SSF52218 1 164 3.59E-30 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_1518 13f2aed4389bf127c42091a5f23824f0 193 Pfam PF01300 Telomere recombination 17 186 7.4E-30 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 Trebr_1518 13f2aed4389bf127c42091a5f23824f0 193 Gene3D G3DSA:3.90.870.10 2 191 5.7E-42 T 13-10-2018 Trebr_1518 13f2aed4389bf127c42091a5f23824f0 193 SUPERFAMILY SSF55821 11 191 2.62E-35 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Trebr_0572 0cdf1c24a3abb8cb424cfb061c056663 353 Pfam PF02653 Branched-chain amino acid transport system / permease component 64 338 5.1E-18 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_2245 666ec02ce794c08864ca9a2afd5714d7 251 SUPERFAMILY SSF46565 182 244 1.13E-14 T 13-10-2018 IPR036869 Chaperone J-domain superfamily Trebr_2245 666ec02ce794c08864ca9a2afd5714d7 251 Gene3D G3DSA:1.10.287.110 174 249 5.4E-11 T 13-10-2018 IPR036869 Chaperone J-domain superfamily Trebr_2245 666ec02ce794c08864ca9a2afd5714d7 251 Pfam PF00226 DnaJ domain 189 245 1.1E-9 T 13-10-2018 IPR001623 DnaJ domain Trebr_2245 666ec02ce794c08864ca9a2afd5714d7 251 SMART SM00271 187 250 8.5E-9 T 13-10-2018 IPR001623 DnaJ domain Trebr_1156 cf347a90de38d4078597c5ff37779edb 150 Pfam PF01047 MarR family 40 91 7.9E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_1156 cf347a90de38d4078597c5ff37779edb 150 Gene3D G3DSA:1.10.10.10 2 148 2.1E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_1156 cf347a90de38d4078597c5ff37779edb 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 2.5E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_1156 cf347a90de38d4078597c5ff37779edb 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 2.5E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_1156 cf347a90de38d4078597c5ff37779edb 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 2.5E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_1156 cf347a90de38d4078597c5ff37779edb 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 2.5E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_1156 cf347a90de38d4078597c5ff37779edb 150 SUPERFAMILY SSF46785 9 141 1.88E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Trebr_1156 cf347a90de38d4078597c5ff37779edb 150 SMART SM00347 27 127 2.1E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Trebr_1036 8268dd09e1029e8d7679e817edeb37c5 110 SUPERFAMILY SSF47413 1 65 8.73E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1036 8268dd09e1029e8d7679e817edeb37c5 110 Gene3D G3DSA:1.10.260.40 1 67 9.1E-12 T 13-10-2018 Trebr_1036 8268dd09e1029e8d7679e817edeb37c5 110 Pfam PF12844 Helix-turn-helix domain 5 66 6.1E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1036 8268dd09e1029e8d7679e817edeb37c5 110 SMART SM00530 6 61 2.8E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_0733 1e295f7f83d0803662fc612e7c1f15d6 480 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 328 463 1.4E-10 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Trebr_0733 1e295f7f83d0803662fc612e7c1f15d6 480 Pfam PF13440 Polysaccharide biosynthesis protein 34 326 1.4E-100 T 13-10-2018 Trebr_2393 28d03082e6e5b9168aeb04c49dc63451 202 Pfam PF07456 Heptaprenyl diphosphate synthase component I 35 184 2.1E-34 T 13-10-2018 IPR010898 Heptaprenyl diphosphate synthase component I Trebr_2393 28d03082e6e5b9168aeb04c49dc63451 202 Gene3D G3DSA:1.10.1760.20 31 192 5.7E-8 T 13-10-2018 Trebr_2393 28d03082e6e5b9168aeb04c49dc63451 202 PIRSF PIRSF027391 28 196 7.5E-27 T 13-10-2018 IPR014535 Predicted heptaprenyl diphosphate synthase, component I Trebr_2350 fd8e7e599765439190e203cd9a42daf1 460 Gene3D G3DSA:3.40.190.10 35 460 5.2E-44 T 13-10-2018 Trebr_2350 fd8e7e599765439190e203cd9a42daf1 460 SUPERFAMILY SSF53850 27 448 1.54E-40 T 13-10-2018 Trebr_2350 fd8e7e599765439190e203cd9a42daf1 460 TIGRFAM TIGR03850 bind_CPR_0540: carbohydrate ABC transporter substrate-binding protein, CPR_0540 family 6 455 1.6E-114 T 13-10-2018 IPR022387 Carbohydrate ABC transporter substrate-binding, CPR0540 Trebr_0946 102f71c52fd6853b44149129fd2a31f4 147 Pfam PF02381 MraZ protein, putative antitoxin-like 77 140 2.3E-20 T 13-10-2018 IPR020603 MraZ domain Trebr_0946 102f71c52fd6853b44149129fd2a31f4 147 Pfam PF02381 MraZ protein, putative antitoxin-like 3 72 8.8E-17 T 13-10-2018 IPR020603 MraZ domain Trebr_0946 102f71c52fd6853b44149129fd2a31f4 147 Gene3D G3DSA:2.40.330.20 1 145 6.5E-42 T 13-10-2018 IPR038619 MraZ superfamily Trebr_0946 102f71c52fd6853b44149129fd2a31f4 147 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 147 43.035 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Trebr_0946 102f71c52fd6853b44149129fd2a31f4 147 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 4 132 2.0E-43 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Trebr_0946 102f71c52fd6853b44149129fd2a31f4 147 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 4 145 2.8E-36 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Trebr_0946 102f71c52fd6853b44149129fd2a31f4 147 SUPERFAMILY SSF89447 3 139 1.78E-39 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily Trebr_0057 f01eb0967a5030b449db96e7cd6b035c 342 Gene3D G3DSA:3.30.479.30 139 211 1.7E-5 T 13-10-2018 Trebr_0057 f01eb0967a5030b449db96e7cd6b035c 342 SMART SM00244 61 275 2.5E-8 T 13-10-2018 IPR001107 Band 7 domain Trebr_0057 f01eb0967a5030b449db96e7cd6b035c 342 Pfam PF01145 SPFH domain / Band 7 family 65 285 1.6E-20 T 13-10-2018 IPR001107 Band 7 domain Trebr_0057 f01eb0967a5030b449db96e7cd6b035c 342 SUPERFAMILY SSF117892 140 277 1.03E-9 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily Trebr_2409 cf0ad56bd62d7bb085c8a98b5378f00b 183 Pfam PF00583 Acetyltransferase (GNAT) family 29 116 1.8E-5 T 13-10-2018 IPR000182 GNAT domain Trebr_2409 cf0ad56bd62d7bb085c8a98b5378f00b 183 Gene3D G3DSA:3.40.630.30 1 165 3.6E-25 T 13-10-2018 Trebr_2409 cf0ad56bd62d7bb085c8a98b5378f00b 183 SUPERFAMILY SSF55729 1 165 8.58E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0645 f211a4df44b129a13f73bc120c6d7006 474 TIGRFAM TIGR00797 matE: MATE efflux family protein 31 418 2.0E-48 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0645 f211a4df44b129a13f73bc120c6d7006 474 Pfam PF01554 MatE 31 191 1.3E-21 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0645 f211a4df44b129a13f73bc120c6d7006 474 Pfam PF01554 MatE 252 413 3.2E-20 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0645 f211a4df44b129a13f73bc120c6d7006 474 PIRSF PIRSF006603 6 456 5.3E-75 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2194 74836dae9cd453c2c3ad64bb9e33fb9f 538 Pfam PF03553 Na+/H+ antiporter family 156 507 3.6E-58 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Trebr_1094 a909cb4f6924e6952f9ec349a16a6ecc 251 PIRSF PIRSF005902 1 246 1.3E-38 T 13-10-2018 IPR001130 TatD family GO:0016788 Trebr_1094 a909cb4f6924e6952f9ec349a16a6ecc 251 Pfam PF01026 TatD related DNase 19 241 4.3E-41 T 13-10-2018 IPR001130 TatD family GO:0016788 Trebr_1094 a909cb4f6924e6952f9ec349a16a6ecc 251 SUPERFAMILY SSF51556 3 242 1.28E-45 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_1094 a909cb4f6924e6952f9ec349a16a6ecc 251 Gene3D G3DSA:3.20.20.140 1 246 2.0E-44 T 13-10-2018 Trebr_1976 2282602e6bb201da88b58397fad98545 299 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 294 1.2E-24 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_1976 2282602e6bb201da88b58397fad98545 299 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 2.6E-12 T 13-10-2018 Trebr_1274 48ee828ee0336c7cf41aaeca33c3e3c1 176 SUPERFAMILY SSF109604 24 157 9.68E-17 T 13-10-2018 Trebr_1274 48ee828ee0336c7cf41aaeca33c3e3c1 176 Gene3D G3DSA:1.10.3210.10 10 158 1.3E-7 T 13-10-2018 Trebr_0885 267e933f5b29b875e1c550378a6b73df 312 Gene3D G3DSA:2.40.10.220 140 252 6.9E-6 T 13-10-2018 Trebr_1831 f03e516a621d499c903d38b0bc3cc7e3 252 Pfam PF01553 Acyltransferase 70 184 6.6E-16 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Trebr_1831 f03e516a621d499c903d38b0bc3cc7e3 252 SMART SM00563 73 192 1.2E-18 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Trebr_1831 f03e516a621d499c903d38b0bc3cc7e3 252 SUPERFAMILY SSF69593 38 244 4.32E-26 T 13-10-2018 Trebr_2148 60aa1b0fc235e4b0f9cb5badc8fa9c6d 502 SUPERFAMILY SSF56954 232 477 1.96E-8 T 13-10-2018 Trebr_2148 60aa1b0fc235e4b0f9cb5badc8fa9c6d 502 Gene3D G3DSA:1.20.1600.10 123 492 2.6E-8 T 13-10-2018 Trebr_2171 8f4c33206c5678b735d534bdedb1838a 265 Pfam PF06182 ABC-2 family transporter protein 39 264 4.8E-61 T 13-10-2018 IPR010390 Protein of unknown function DUF990 Trebr_0922 78f652cb6520ef31fe64a56b310a5138 151 Pfam PF12821 Threonine/Serine exporter, ThrE 12 135 6.6E-29 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE Trebr_0748 3a6128a07a47aa1404bfe2d7cd7355fe 299 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 2.6E-12 T 13-10-2018 Trebr_0748 3a6128a07a47aa1404bfe2d7cd7355fe 299 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 294 1.8E-25 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_1874 48999b792eb6e72e908b65393350a26b 317 Gene3D G3DSA:3.90.550.10 1 267 4.0E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1874 48999b792eb6e72e908b65393350a26b 317 Pfam PF00535 Glycosyl transferase family 2 7 146 5.9E-18 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_1874 48999b792eb6e72e908b65393350a26b 317 SUPERFAMILY SSF53448 3 259 2.69E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2229 6d1db13590e376dd2fe6a428ae85cbb7 266 Pfam PF00535 Glycosyl transferase family 2 4 150 3.4E-28 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_2229 6d1db13590e376dd2fe6a428ae85cbb7 266 SUPERFAMILY SSF53448 1 231 1.2E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_2229 6d1db13590e376dd2fe6a428ae85cbb7 266 Gene3D G3DSA:3.90.550.10 1 240 9.6E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0373 3cbae39c7f612b1f7e5b708051ec2acb 193 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 3 178 3.0E-57 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Trebr_0373 3cbae39c7f612b1f7e5b708051ec2acb 193 Gene3D G3DSA:2.60.120.10 3 188 1.9E-68 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_0373 3cbae39c7f612b1f7e5b708051ec2acb 193 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 8 179 2.2E-70 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Trebr_0373 3cbae39c7f612b1f7e5b708051ec2acb 193 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 9 178 4.4E-72 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Trebr_0373 3cbae39c7f612b1f7e5b708051ec2acb 193 SUPERFAMILY SSF51182 3 185 6.77E-73 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily Trebr_2147 8aa634952c17596671bbff372d9986ae 350 Gene3D G3DSA:1.20.58.1130 29 234 2.4E-73 T 13-10-2018 Trebr_2147 8aa634952c17596671bbff372d9986ae 350 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 21 340 1.2E-56 T 13-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 Trebr_2147 8aa634952c17596671bbff372d9986ae 350 Gene3D G3DSA:1.20.1420.30 54 339 2.4E-73 T 13-10-2018 Trebr_2147 8aa634952c17596671bbff372d9986ae 350 Pfam PF01699 Sodium/calcium exchanger protein 205 346 1.2E-27 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Trebr_2147 8aa634952c17596671bbff372d9986ae 350 Pfam PF01699 Sodium/calcium exchanger protein 23 173 2.0E-23 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Trebr_1561 ccfbb69915ebd5b7f7a3f942d40410af 462 Gene3D G3DSA:3.20.20.70 28 448 4.4E-69 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1561 ccfbb69915ebd5b7f7a3f942d40410af 462 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 40 268 4.7E-25 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Trebr_1561 ccfbb69915ebd5b7f7a3f942d40410af 462 SUPERFAMILY SSF51395 29 437 6.41E-48 T 13-10-2018 Trebr_1932 a42874b218fec2554a55e5b55a1a12dd 456 Pfam PF06123 Inner membrane protein CreD 21 446 1.6E-132 T 13-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD Trebr_1932 a42874b218fec2554a55e5b55a1a12dd 456 PIRSF PIRSF004548 4 455 1.9E-108 T 13-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 SMART SM00028 334 367 0.0083 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 SMART SM00028 170 203 8.3 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 SMART SM00028 300 333 0.0011 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 SMART SM00028 266 299 17.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 Pfam PF14559 Tetratricopeptide repeat 311 377 8.0E-8 T 13-10-2018 Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 Gene3D G3DSA:1.25.40.10 229 379 1.2E-25 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 Gene3D G3DSA:1.25.40.10 74 228 4.1E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 SUPERFAMILY SSF48452 81 203 4.27E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1457 a988149ddbfdc5752d17be23ccac2cab 379 SUPERFAMILY SSF48452 255 377 8.34E-24 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0428 49737494e1d775911c57d70be844391c 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 290 2.1E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0428 49737494e1d775911c57d70be844391c 299 SUPERFAMILY SSF161098 14 291 9.68E-54 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0428 49737494e1d775911c57d70be844391c 299 Gene3D G3DSA:1.10.3720.10 56 295 1.5E-63 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2183 93ad2a46b941f77df5fa5848e5347155 507 PIRSF PIRSF006603 57 499 7.1E-95 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2183 93ad2a46b941f77df5fa5848e5347155 507 TIGRFAM TIGR00797 matE: MATE efflux family protein 78 471 4.5E-59 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2183 93ad2a46b941f77df5fa5848e5347155 507 Pfam PF01554 MatE 302 461 9.5E-20 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2183 93ad2a46b941f77df5fa5848e5347155 507 Pfam PF01554 MatE 78 239 7.9E-32 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0368 90378fc0562789f065218cf39dbc422b 140 Pfam PF11070 Protein of unknown function (DUF2871) 1 133 6.8E-49 T 13-10-2018 IPR021299 Protein of unknown function DUF2871 Trebr_0252 1201437eded17b54b3ae71761b883132 381 Pfam PF00990 Diguanylate cyclase, GGDEF domain 223 374 4.1E-39 T 13-10-2018 IPR000160 GGDEF domain Trebr_0252 1201437eded17b54b3ae71761b883132 381 Gene3D G3DSA:3.30.70.270 216 380 2.0E-44 T 13-10-2018 Trebr_0252 1201437eded17b54b3ae71761b883132 381 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 223 380 7.4E-33 T 13-10-2018 IPR000160 GGDEF domain Trebr_0252 1201437eded17b54b3ae71761b883132 381 SMART SM00267 211 380 6.1E-42 T 13-10-2018 IPR000160 GGDEF domain Trebr_0252 1201437eded17b54b3ae71761b883132 381 SUPERFAMILY SSF55073 227 379 1.73E-39 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1585 a652dcc467c20816a1a492d19d4e5920 1489 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 997 1380 7.0E-13 T 13-10-2018 IPR007452 Translocation and assembly module TamB Trebr_2447 58a27b33f020b7d506d53d740835d3a4 231 Gene3D G3DSA:3.40.50.300 42 216 2.5E-31 T 13-10-2018 Trebr_2447 58a27b33f020b7d506d53d740835d3a4 231 SUPERFAMILY SSF52540 56 217 9.7E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2447 58a27b33f020b7d506d53d740835d3a4 231 Pfam PF01695 IstB-like ATP binding protein 62 212 6.9E-12 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 PRINTS PR00834 HtrA/DegQ protease family signature 250 267 3.3E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 PRINTS PR00834 HtrA/DegQ protease family signature 151 171 3.3E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 PRINTS PR00834 HtrA/DegQ protease family signature 130 142 3.3E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 PRINTS PR00834 HtrA/DegQ protease family signature 336 348 3.3E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 PRINTS PR00834 HtrA/DegQ protease family signature 228 245 3.3E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 PRINTS PR00834 HtrA/DegQ protease family signature 193 217 3.3E-45 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 SMART SM00228 416 483 2.5E-5 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 SMART SM00228 296 378 3.0E-11 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 SUPERFAMILY SSF50156 254 379 1.45E-22 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 SUPERFAMILY SSF50494 65 288 4.0E-53 T 13-10-2018 IPR009003 Peptidase S1, PA clan Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 SUPERFAMILY SSF50156 402 486 1.97E-13 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 Gene3D G3DSA:2.30.42.60 395 491 6.2E-15 T 13-10-2018 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 Gene3D G3DSA:2.30.42.10 291 394 7.3E-24 T 13-10-2018 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 63 487 2.1E-137 T 13-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 Pfam PF13365 Trypsin-like peptidase domain 118 257 1.1E-29 T 13-10-2018 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 Gene3D G3DSA:2.40.10.120 61 289 3.1E-68 T 13-10-2018 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 Pfam PF13180 PDZ domain 296 386 1.9E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_1691 9f9aafefbe43e59a85dc3cef1929bff9 493 Pfam PF13180 PDZ domain 423 468 3.5E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 Trebr_2092 a6ccec05b55ca3ab946a31457ae852ae 223 SUPERFAMILY SSF160443 136 220 5.89E-13 T 13-10-2018 IPR036063 Smr domain superfamily Trebr_2092 a6ccec05b55ca3ab946a31457ae852ae 223 Pfam PF01713 Smr domain 138 221 7.7E-18 T 13-10-2018 IPR002625 Smr domain Trebr_2092 a6ccec05b55ca3ab946a31457ae852ae 223 SMART SM00463 135 221 3.4E-10 T 13-10-2018 IPR002625 Smr domain Trebr_2092 a6ccec05b55ca3ab946a31457ae852ae 223 Gene3D G3DSA:3.30.1370.110 109 223 6.6E-21 T 13-10-2018 Trebr_0642 c37a4f20dbaf730ee4dfd5caf70d309c 216 Pfam PF06161 Protein of unknown function (DUF975) 96 200 6.1E-23 T 13-10-2018 IPR010380 Protein of unknown function DUF975 Trebr_2573 7a24cc314992068fa4478cc8c0fac4f2 246 Gene3D G3DSA:2.50.20.10 15 245 1.1E-48 T 13-10-2018 Trebr_2573 7a24cc314992068fa4478cc8c0fac4f2 246 SUPERFAMILY SSF89392 69 181 5.1E-5 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Trebr_2573 7a24cc314992068fa4478cc8c0fac4f2 246 Pfam PF17131 Outer membrane lipoprotein-sorting protein 69 245 1.8E-46 T 13-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein Trebr_0363 df27bf4d439de50f511fa79a0c2980de 445 Pfam PF13581 Histidine kinase-like ATPase domain 164 293 7.1E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0363 df27bf4d439de50f511fa79a0c2980de 445 Pfam PF00027 Cyclic nucleotide-binding domain 314 397 5.5E-15 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_0363 df27bf4d439de50f511fa79a0c2980de 445 SMART SM00100 293 412 7.5E-9 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain Trebr_0363 df27bf4d439de50f511fa79a0c2980de 445 SUPERFAMILY SSF55874 171 279 2.26E-5 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0363 df27bf4d439de50f511fa79a0c2980de 445 SUPERFAMILY SSF51206 312 412 1.7E-22 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like Trebr_0363 df27bf4d439de50f511fa79a0c2980de 445 Gene3D G3DSA:3.30.565.10 155 302 1.4E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0363 df27bf4d439de50f511fa79a0c2980de 445 Gene3D G3DSA:2.60.120.10 307 424 1.6E-22 T 13-10-2018 IPR014710 RmlC-like jelly roll fold Trebr_1482 62aa203fa259a14d6ee567f1a0bf31ac 180 SUPERFAMILY SSF47240 54 179 2.44E-30 T 13-10-2018 IPR009078 Ferritin-like superfamily Trebr_1482 62aa203fa259a14d6ee567f1a0bf31ac 180 Pfam PF02915 Rubrerythrin 61 174 7.9E-14 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Trebr_1482 62aa203fa259a14d6ee567f1a0bf31ac 180 SUPERFAMILY SSF57802 1 34 7.57E-11 T 13-10-2018 Trebr_1482 62aa203fa259a14d6ee567f1a0bf31ac 180 Gene3D G3DSA:1.20.1260.10 53 178 2.7E-23 T 13-10-2018 IPR012347 Ferritin-like Trebr_1482 62aa203fa259a14d6ee567f1a0bf31ac 180 Gene3D G3DSA:2.20.28.10 1 36 1.5E-14 T 13-10-2018 Trebr_1035 0336948bb1bd22ab2ef6152110af1456 609 Gene3D G3DSA:2.60.40.10 41 142 1.6E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1035 0336948bb1bd22ab2ef6152110af1456 609 SUPERFAMILY SSF49265 33 127 1.42E-6 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_1035 0336948bb1bd22ab2ef6152110af1456 609 Pfam PF08757 CotH kinase protein 282 597 2.2E-39 T 13-10-2018 IPR014867 Spore coat protein CotH Trebr_1035 0336948bb1bd22ab2ef6152110af1456 609 SUPERFAMILY SSF49265 53 222 1.9E-5 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_2565 e4f52cff94256c2a55718d72b1d50872 86 Pfam PF12675 Protein of unknown function (DUF3795) 16 62 8.8E-11 T 13-10-2018 IPR024227 Protein of unknown function DUF3795 Trebr_1315 b6dcbc30c5ec058e6484c6272f62df84 667 Pfam PF00263 Bacterial type II and III secretion system protein 473 634 8.4E-28 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 Trebr_0122 f28e5e9fc0f94c8dd8c57257c362bb0b 271 SUPERFAMILY SSF161098 5 267 4.21E-52 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0122 f28e5e9fc0f94c8dd8c57257c362bb0b 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 264 1.6E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0122 f28e5e9fc0f94c8dd8c57257c362bb0b 271 Gene3D G3DSA:1.10.3720.10 3 260 9.4E-45 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0109 5ce5fffeccb514b574552e08720ebb6a 587 Gene3D G3DSA:1.10.287.950 21 227 1.2E-6 T 13-10-2018 Trebr_0109 5ce5fffeccb514b574552e08720ebb6a 587 SUPERFAMILY SSF58104 63 210 3.92E-9 T 13-10-2018 Trebr_1602 954b8defa7e64d79fbfcaf54a38eb790 236 Gene3D G3DSA:3.30.1330.60 81 235 6.4E-43 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_1602 954b8defa7e64d79fbfcaf54a38eb790 236 Pfam PF00691 OmpA family 122 224 7.1E-19 T 13-10-2018 IPR006665 OmpA-like domain Trebr_1602 954b8defa7e64d79fbfcaf54a38eb790 236 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 5 51 3.8E-15 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain Trebr_1602 954b8defa7e64d79fbfcaf54a38eb790 236 SUPERFAMILY SSF103088 110 230 3.27E-29 T 13-10-2018 IPR036737 OmpA-like domain superfamily Trebr_0593 9c8571d386d36de9d06c7b025ba3fc75 146 Pfam PF10107 Endonuclease related to archaeal Holliday junction resolvase 48 144 5.7E-34 T 13-10-2018 IPR019287 Holliday junction resolvase-related domain Trebr_1648 4c4f14690630ceb8b0024f6247236256 311 Pfam PF12784 PD-(D/E)XK nuclease family transposase 15 123 1.9E-12 T 13-10-2018 Trebr_1648 4c4f14690630ceb8b0024f6247236256 311 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 15 306 2.2E-22 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA Trebr_2168 fbf9e8879ffc48f2b997409b291f0cbe 271 SUPERFAMILY SSF51556 4 259 1.04E-41 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_2168 fbf9e8879ffc48f2b997409b291f0cbe 271 Pfam PF01026 TatD related DNase 4 258 5.3E-38 T 13-10-2018 IPR001130 TatD family GO:0016788 Trebr_2168 fbf9e8879ffc48f2b997409b291f0cbe 271 Gene3D G3DSA:3.20.20.140 1 264 7.4E-49 T 13-10-2018 Trebr_2168 fbf9e8879ffc48f2b997409b291f0cbe 271 PIRSF PIRSF005902 1 263 3.5E-36 T 13-10-2018 IPR001130 TatD family GO:0016788 Trebr_0332 e141e393990916564195db0552972d41 131 SUPERFAMILY SSF52833 30 124 4.92E-19 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_0332 e141e393990916564195db0552972d41 131 Gene3D G3DSA:3.40.30.10 27 128 7.0E-20 T 13-10-2018 Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 Pfam PF00189 Ribosomal protein S3, C-terminal domain 122 204 2.2E-35 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 ProSitePatterns PS00548 Ribosomal protein S3 signature. 165 199 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 208 36.852 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 211 2.3E-89 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 Gene3D G3DSA:3.30.300.20 17 109 1.1E-27 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 Gene3D G3DSA:3.30.1140.32 110 209 9.1E-38 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 Pfam PF07650 KH domain 48 112 2.5E-15 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 SUPERFAMILY SSF54821 110 206 3.53E-34 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Trebr_2289 c09c8e69db1974f76a49aea81302441c 248 SUPERFAMILY SSF54814 2 108 1.55E-33 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Trebr_2311 b07576ee4d84501bdc9254c83639f2c9 81 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 3 74 1.5E-9 T 13-10-2018 Trebr_2311 b07576ee4d84501bdc9254c83639f2c9 81 SUPERFAMILY SSF52833 3 75 1.45E-14 T 13-10-2018 IPR036249 Thioredoxin-like superfamily Trebr_2311 b07576ee4d84501bdc9254c83639f2c9 81 Gene3D G3DSA:3.40.30.10 1 75 8.2E-16 T 13-10-2018 Trebr_1085 e9b23aab15a085a92ff6c61086856c28 566 Pfam PF02653 Branched-chain amino acid transport system / permease component 262 555 3.7E-34 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_1225 e51232009f579de41ef4e5efe4cf8491 368 Gene3D G3DSA:3.40.50.1980 24 366 6.0E-100 T 13-10-2018 Trebr_1225 e51232009f579de41ef4e5efe4cf8491 368 SUPERFAMILY SSF53807 38 361 9.03E-67 T 13-10-2018 Trebr_1225 e51232009f579de41ef4e5efe4cf8491 368 Pfam PF01497 Periplasmic binding protein 102 298 9.5E-29 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain Trebr_0303 1145e43768dfd41fbf388fcac2c01e1a 358 Gene3D G3DSA:3.40.50.2000 171 328 4.7E-31 T 13-10-2018 Trebr_0303 1145e43768dfd41fbf388fcac2c01e1a 358 Pfam PF13439 Glycosyltransferase Family 4 13 163 3.3E-7 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Trebr_0303 1145e43768dfd41fbf388fcac2c01e1a 358 SUPERFAMILY SSF53756 8 323 6.28E-50 T 13-10-2018 Trebr_0303 1145e43768dfd41fbf388fcac2c01e1a 358 Gene3D G3DSA:3.40.50.2000 1 170 6.0E-9 T 13-10-2018 Trebr_0303 1145e43768dfd41fbf388fcac2c01e1a 358 Pfam PF00534 Glycosyl transferases group 1 176 328 1.6E-28 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 Trebr_0323 87238bf1f8be2f7298af8ab9ee385122 433 Gene3D G3DSA:3.40.190.10 58 392 3.4E-90 T 13-10-2018 Trebr_0323 87238bf1f8be2f7298af8ab9ee385122 433 SUPERFAMILY SSF53850 31 432 5.69E-69 T 13-10-2018 Trebr_0323 87238bf1f8be2f7298af8ab9ee385122 433 Gene3D G3DSA:3.40.190.10 153 423 3.4E-90 T 13-10-2018 Trebr_0323 87238bf1f8be2f7298af8ab9ee385122 433 Pfam PF13416 Bacterial extracellular solute-binding protein 59 358 3.8E-36 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein Trebr_0948 e4304cee114db4a6088b5030bece9041 98 Pfam PF04999 Cell division protein FtsL 28 89 1.3E-5 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Trebr_0362 df775ad797e8c88fb99722d66359452e 213 Pfam PF13568 Outer membrane protein beta-barrel domain 20 190 2.9E-11 T 13-10-2018 IPR025665 Outer membrane protein beta-barrel domain Trebr_1440 aecaffeea2a8af51ba182f32992cd1c6 336 Pfam PF14057 GGGtGRT protein 7 332 3.5E-196 T 13-10-2018 IPR025964 GGGtGRT protein Trebr_2163 47042709aba9986c5eaa33a5d76b09e8 216 Pfam PF02589 LUD domain 19 210 2.2E-48 T 13-10-2018 IPR003741 LUD domain Trebr_2163 47042709aba9986c5eaa33a5d76b09e8 216 PIRSF PIRSF020269 11 216 1.8E-64 T 13-10-2018 IPR009501 Uncharacterised conserved protein UCP020269 Trebr_0093 8690fe5a11a16703e6f8108f87f2daa1 432 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 10 422 2.5E-103 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Trebr_0093 8690fe5a11a16703e6f8108f87f2daa1 432 PIRSF PIRSF006066 4 431 5.1E-125 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Trebr_0093 8690fe5a11a16703e6f8108f87f2daa1 432 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 425 9.6E-120 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Trebr_1488 01cff5c93945133438dd4e584907dd71 596 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 432 459 4.2E-14 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1488 01cff5c93945133438dd4e584907dd71 596 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 358 387 4.2E-14 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1488 01cff5c93945133438dd4e584907dd71 596 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 461 490 4.2E-14 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Trebr_1488 01cff5c93945133438dd4e584907dd71 596 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 416 560 9.1E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_1488 01cff5c93945133438dd4e584907dd71 596 Gene3D G3DSA:1.10.287.950 306 595 4.7E-44 T 13-10-2018 Trebr_1488 01cff5c93945133438dd4e584907dd71 596 SUPERFAMILY SSF58104 294 592 1.83E-44 T 13-10-2018 Trebr_1488 01cff5c93945133438dd4e584907dd71 596 SMART SM00283 334 588 1.2E-22 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Trebr_0162 5580db7f0c0531ef469412e6f0692caf 370 Gene3D G3DSA:3.30.70.20 218 247 4.1E-6 T 13-10-2018 Trebr_0162 5580db7f0c0531ef469412e6f0692caf 370 Pfam PF04015 Domain of unknown function (DUF362) 45 315 8.5E-49 T 13-10-2018 IPR007160 Domain of unknown function DUF362 Trebr_0162 5580db7f0c0531ef469412e6f0692caf 370 Pfam PF12838 4Fe-4S dicluster domain 198 242 1.3E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Trebr_0162 5580db7f0c0531ef469412e6f0692caf 370 SUPERFAMILY SSF54862 149 297 2.62E-20 T 13-10-2018 Trebr_0162 5580db7f0c0531ef469412e6f0692caf 370 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 228 239 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Trebr_0162 5580db7f0c0531ef469412e6f0692caf 370 Gene3D G3DSA:3.30.70.20 174 217 5.0E-6 T 13-10-2018 Trebr_2161 660a40040d392a9f07b3f99e43741487 458 Pfam PF01554 MatE 255 416 2.8E-17 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2161 660a40040d392a9f07b3f99e43741487 458 Pfam PF01554 MatE 25 185 5.6E-28 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2161 660a40040d392a9f07b3f99e43741487 458 PIRSF PIRSF006603 12 458 7.0E-86 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2161 660a40040d392a9f07b3f99e43741487 458 TIGRFAM TIGR00797 matE: MATE efflux family protein 25 429 3.3E-60 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1402 ff59382e7d86b08af72c9fef85f7030d 446 SMART SM00854 58 331 5.0E-35 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA Trebr_1402 ff59382e7d86b08af72c9fef85f7030d 446 SUPERFAMILY SSF56300 57 290 4.7E-24 T 13-10-2018 Trebr_1402 ff59382e7d86b08af72c9fef85f7030d 446 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 58 331 3.2E-48 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA Trebr_2535 69d04733297b0db4cf471261b253935f 120 Pfam PF13788 Domain of unknown function (DUF4180) 9 118 1.6E-39 T 13-10-2018 IPR025438 Domain of unknown function DUF4180 Trebr_0250 a663671500f8304b4579bf911038ea11 392 Pfam PF11187 Protein of unknown function (DUF2974) 87 308 2.6E-83 T 13-10-2018 IPR024499 Protein of unknown function DUF2974 Trebr_0250 a663671500f8304b4579bf911038ea11 392 SUPERFAMILY SSF53474 120 230 2.15E-12 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_2499 36a52d4a20c41f649eaecc67f5e29527 273 Gene3D G3DSA:3.40.1280.10 125 272 3.6E-33 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Trebr_2499 36a52d4a20c41f649eaecc67f5e29527 273 Pfam PF00588 SpoU rRNA Methylase family 130 263 5.0E-25 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Trebr_2499 36a52d4a20c41f649eaecc67f5e29527 273 SUPERFAMILY SSF75217 128 270 1.24E-27 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases Trebr_1227 401f6c5652a594b9f5e3c5e7262dd954 261 SMART SM00382 27 216 5.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1227 401f6c5652a594b9f5e3c5e7262dd954 261 Pfam PF00005 ABC transporter 18 166 1.4E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1227 401f6c5652a594b9f5e3c5e7262dd954 261 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1227 401f6c5652a594b9f5e3c5e7262dd954 261 Gene3D G3DSA:3.40.50.300 2 255 1.3E-61 T 13-10-2018 Trebr_1227 401f6c5652a594b9f5e3c5e7262dd954 261 SUPERFAMILY SSF52540 3 231 1.46E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1158 b3cbf3cbeb64a8bdaa3f532cd5f60ae8 233 Gene3D G3DSA:2.60.40.1120 115 216 2.0E-6 T 13-10-2018 Trebr_1158 b3cbf3cbeb64a8bdaa3f532cd5f60ae8 233 SUPERFAMILY SSF49464 116 203 2.16E-5 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily Trebr_1158 b3cbf3cbeb64a8bdaa3f532cd5f60ae8 233 Pfam PF10719 Late competence development protein ComFB 4 88 3.5E-20 T 13-10-2018 IPR019657 Late competence development protein ComFB Trebr_1294 a96a3c4690188f044ffa004850103a7f 333 Pfam PF14238 Domain of unknown function (DUF4340) 78 221 1.2E-10 T 13-10-2018 IPR025641 Domain of unknown function DUF4340 Trebr_2498 8888db7a837d4d2d1db5c3ba52dcec05 505 Pfam PF08668 HDOD domain 243 437 4.9E-52 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD Trebr_2498 8888db7a837d4d2d1db5c3ba52dcec05 505 TIGRFAM TIGR00277 HDIG: HDIG domain 333 436 2.1E-8 T 13-10-2018 IPR006675 HDIG domain Trebr_2498 8888db7a837d4d2d1db5c3ba52dcec05 505 Gene3D G3DSA:1.10.3210.10 220 501 5.2E-67 T 13-10-2018 Trebr_2498 8888db7a837d4d2d1db5c3ba52dcec05 505 SUPERFAMILY SSF109604 235 495 1.1E-57 T 13-10-2018 Trebr_0631 49867cd983e854f2b6ef2434a0775b98 356 Pfam PF05036 Sporulation related domain 289 329 3.2E-5 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 Trebr_0631 49867cd983e854f2b6ef2434a0775b98 356 SUPERFAMILY SSF110997 289 329 7.72E-5 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Trebr_2399 a0f47c8559fde3456cda905cb4bb1fca 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 58 1.6E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Trebr_2399 a0f47c8559fde3456cda905cb4bb1fca 200 Gene3D G3DSA:1.10.357.10 1 193 4.7E-21 T 13-10-2018 Trebr_2399 a0f47c8559fde3456cda905cb4bb1fca 200 SUPERFAMILY SSF46689 7 71 1.49E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Trebr_0756 65fd9c2cc90cd2819ad9858acaf1d5c9 457 SUPERFAMILY SSF56601 3 339 1.01E-63 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Trebr_0756 65fd9c2cc90cd2819ad9858acaf1d5c9 457 Gene3D G3DSA:3.40.710.10 65 338 2.0E-74 T 13-10-2018 Trebr_0756 65fd9c2cc90cd2819ad9858acaf1d5c9 457 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 68 312 3.3E-51 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Trebr_0756 65fd9c2cc90cd2819ad9858acaf1d5c9 457 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 185 198 1.4E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Trebr_0756 65fd9c2cc90cd2819ad9858acaf1d5c9 457 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 101 112 1.4E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Trebr_0756 65fd9c2cc90cd2819ad9858acaf1d5c9 457 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 158 175 1.4E-15 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Trebr_2389 9b197447184db05bedcb076e4b6ef134 390 Gene3D G3DSA:3.20.20.140 61 357 3.6E-107 T 13-10-2018 Trebr_2389 9b197447184db05bedcb076e4b6ef134 390 Gene3D G3DSA:2.30.40.10 20 383 3.6E-107 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Trebr_2389 9b197447184db05bedcb076e4b6ef134 390 Pfam PF01979 Amidohydrolase family 58 372 7.4E-18 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Trebr_2389 9b197447184db05bedcb076e4b6ef134 390 SUPERFAMILY SSF51556 61 357 4.08E-79 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_2389 9b197447184db05bedcb076e4b6ef134 390 SUPERFAMILY SSF51338 7 377 4.51E-16 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Trebr_2389 9b197447184db05bedcb076e4b6ef134 390 PIRSF PIRSF038994 6 390 3.1E-107 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Trebr_2389 9b197447184db05bedcb076e4b6ef134 390 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 6 373 2.1E-81 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Trebr_1679 bf4b18c0358ce17953cb5a3f2add1c71 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 269 2.4E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1679 bf4b18c0358ce17953cb5a3f2add1c71 277 Gene3D G3DSA:1.10.3720.10 3 268 2.6E-54 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1679 bf4b18c0358ce17953cb5a3f2add1c71 277 SUPERFAMILY SSF161098 11 277 2.15E-65 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0411 46e90dc335744236ec69b2a61e810e91 360 PIRSF PIRSF015268 1 336 5.6E-124 T 13-10-2018 IPR011204 Virulence protein RhuM-like Trebr_0411 46e90dc335744236ec69b2a61e810e91 360 Pfam PF13310 Virulence protein RhuM family 61 307 9.2E-103 T 13-10-2018 IPR011204 Virulence protein RhuM-like Trebr_1382 393c2d33837e47af5188e03857e224a7 352 Pfam PF03116 NQR2, RnfD, RnfE family 12 330 1.9E-36 T 13-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 Trebr_2167 172c20162f733a3d5fd6b080da184001 149 Pfam PF04074 Domain of unknown function (DUF386) 1 147 2.2E-32 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family Trebr_2167 172c20162f733a3d5fd6b080da184001 149 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 149 4.7E-20 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family Trebr_2167 172c20162f733a3d5fd6b080da184001 149 Gene3D G3DSA:2.60.120.370 1 149 2.5E-30 T 13-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily Trebr_2167 172c20162f733a3d5fd6b080da184001 149 SUPERFAMILY SSF51197 1 149 5.77E-28 T 13-10-2018 Trebr_1567 38175e0c11ed4ff61833c7207bbba685 622 Gene3D G3DSA:1.25.40.10 514 621 4.1E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_1218 8befd10ff0ac7cd14c768bb4c0859912 52 Pfam PF12669 Virus attachment protein p12 family 2 49 3.2E-7 T 13-10-2018 Trebr_1937 6d7092d66294b4cb00cda9b2f99ce94b 169 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 13 168 7.8E-29 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1937 6d7092d66294b4cb00cda9b2f99ce94b 169 SUPERFAMILY SSF51306 26 168 2.49E-29 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Trebr_1937 6d7092d66294b4cb00cda9b2f99ce94b 169 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 88 100 4.6E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1937 6d7092d66294b4cb00cda9b2f99ce94b 169 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 27 43 4.6E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1937 6d7092d66294b4cb00cda9b2f99ce94b 169 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 133 152 4.6E-10 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Trebr_1937 6d7092d66294b4cb00cda9b2f99ce94b 169 Pfam PF00717 Peptidase S24-like 34 98 6.0E-9 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Trebr_1593 f89a9a44c3589eecebffcc0730da3c29 186 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 22 182 1.0E-40 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Trebr_1593 f89a9a44c3589eecebffcc0730da3c29 186 SMART SM00479 22 186 1.9E-45 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Trebr_1593 f89a9a44c3589eecebffcc0730da3c29 186 Gene3D G3DSA:3.30.420.10 19 185 2.9E-54 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Trebr_1593 f89a9a44c3589eecebffcc0730da3c29 186 Pfam PF00929 Exonuclease 25 179 5.4E-37 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Trebr_1593 f89a9a44c3589eecebffcc0730da3c29 186 SUPERFAMILY SSF53098 23 185 2.75E-57 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily Trebr_1809 3a451699d595d9973b11a44ca61ab22b 390 Pfam PF14897 EpsG family 76 384 2.8E-19 T 13-10-2018 Trebr_0707 2b83f72072ecabc2df8f12adc101527e 302 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 277 7.0E-31 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0860 f28097a3ad0f9fa888aed56ac86874da 409 Gene3D G3DSA:3.20.20.450 1 253 1.0E-53 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_0860 f28097a3ad0f9fa888aed56ac86874da 409 SUPERFAMILY SSF141868 4 233 5.49E-54 T 13-10-2018 IPR035919 EAL domain superfamily Trebr_0860 f28097a3ad0f9fa888aed56ac86874da 409 Pfam PF00563 EAL domain 5 233 7.3E-50 T 13-10-2018 IPR001633 EAL domain Trebr_0860 f28097a3ad0f9fa888aed56ac86874da 409 SUPERFAMILY SSF103190 290 397 3.61E-17 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Trebr_0860 f28097a3ad0f9fa888aed56ac86874da 409 SMART SM00052 4 238 1.0E-23 T 13-10-2018 IPR001633 EAL domain Trebr_1400 3ffe8e6b13b6768db61b3aeded586991 331 SMART SM00530 6 61 1.2E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1400 3ffe8e6b13b6768db61b3aeded586991 331 Pfam PF01381 Helix-turn-helix 7 60 1.9E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Trebr_1400 3ffe8e6b13b6768db61b3aeded586991 331 SUPERFAMILY SSF47413 1 65 5.12E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Trebr_1400 3ffe8e6b13b6768db61b3aeded586991 331 SUPERFAMILY SSF81324 158 300 2.35E-5 T 13-10-2018 Trebr_1400 3ffe8e6b13b6768db61b3aeded586991 331 Gene3D G3DSA:1.10.260.40 1 64 2.4E-19 T 13-10-2018 Trebr_0296 aebf9d14d201914c2cac33f517b674e0 113 Pfam PF03151 Triose-phosphate Transporter family 12 110 1.4E-7 T 13-10-2018 IPR004853 Sugar phosphate transporter domain Trebr_0296 aebf9d14d201914c2cac33f517b674e0 113 SUPERFAMILY SSF103481 40 111 7.06E-11 T 13-10-2018 Trebr_0296 aebf9d14d201914c2cac33f517b674e0 113 Gene3D G3DSA:1.10.3730.20 5 113 5.7E-5 T 13-10-2018 Trebr_0226 775729b2f1f9b368ae1c639910b056ec 168 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 26 158 1.0E-24 T 13-10-2018 IPR019223 Domain of unknown function DUF2147 Trebr_0226 775729b2f1f9b368ae1c639910b056ec 168 Gene3D G3DSA:2.40.128.520 82 168 1.9E-10 T 13-10-2018 Trebr_1983 1fe7e8da285c31e39b0b014999fd6149 427 Pfam PF08239 Bacterial SH3 domain 150 210 6.0E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type Trebr_1983 1fe7e8da285c31e39b0b014999fd6149 427 Gene3D G3DSA:2.30.30.40 146 211 1.7E-9 T 13-10-2018 Trebr_0738 6de36aeb10e478c3872a6d1dc5d80ff0 315 SUPERFAMILY SSF53383 22 313 3.61E-9 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_1171 5f207967dfa6e687b344746fc9b39d95 258 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 74 238 2.2E-62 T 13-10-2018 IPR005273 Uracil-DNA glycosylase family 4 Trebr_1171 5f207967dfa6e687b344746fc9b39d95 258 SUPERFAMILY SSF52141 64 240 4.91E-61 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Trebr_1171 5f207967dfa6e687b344746fc9b39d95 258 SMART SM00987 88 235 1.2E-41 T 13-10-2018 Trebr_1171 5f207967dfa6e687b344746fc9b39d95 258 Pfam PF03167 Uracil DNA glycosylase superfamily 88 235 9.1E-45 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Trebr_1171 5f207967dfa6e687b344746fc9b39d95 258 SMART SM00986 88 235 1.2E-41 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Trebr_1171 5f207967dfa6e687b344746fc9b39d95 258 Gene3D G3DSA:3.40.470.10 62 255 9.8E-72 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Trebr_1951 5a6818999c637aa7b0aedb8389ae43a6 207 Pfam PF01618 MotA/TolQ/ExbB proton channel family 66 188 4.9E-29 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Trebr_2126 ba12eba3db15621f24e141ba1f1078d6 231 Gene3D G3DSA:3.10.350.10 150 206 1.2E-5 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_2018 a25220eab26b232d6ced2530246f65ee 304 Gene3D G3DSA:1.10.3720.10 51 302 6.8E-57 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2018 a25220eab26b232d6ced2530246f65ee 304 SUPERFAMILY SSF161098 55 288 1.57E-49 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2018 a25220eab26b232d6ced2530246f65ee 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 297 6.3E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0883 7e3081a1a597503f23b679e5af86c983 309 Pfam PF06161 Protein of unknown function (DUF975) 25 219 2.8E-9 T 13-10-2018 IPR010380 Protein of unknown function DUF975 Trebr_0737 474d722238a71c0e3933f38b14225510 167 SUPERFAMILY SSF55729 23 148 2.7E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase Trebr_0737 474d722238a71c0e3933f38b14225510 167 Gene3D G3DSA:3.40.630.30 17 152 2.4E-17 T 13-10-2018 Trebr_0737 474d722238a71c0e3933f38b14225510 167 Pfam PF13673 Acetyltransferase (GNAT) domain 41 139 9.7E-13 T 13-10-2018 IPR000182 GNAT domain Trebr_0924 501c4c38d6a85b18964e844d864710be 488 Pfam PF02687 FtsX-like permease family 379 473 4.5E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_0232 6c3a161522f32a00037691c2b9cc59f1 216 Pfam PF13367 Protease prsW family 38 198 3.0E-8 T 13-10-2018 IPR026898 Protease PrsW GO:0008233 Trebr_0442 81c03052b5468767f0f1a4fa24b25351 376 Pfam PF04230 Polysaccharide pyruvyl transferase 14 314 3.1E-35 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase Trebr_0410 c13b4cee4130825f54445ee3c00150c5 202 SMART SM01040 15 114 5.9E-22 T 13-10-2018 IPR003497 BRO N-terminal domain Trebr_0410 c13b4cee4130825f54445ee3c00150c5 202 Pfam PF02498 BRO family, N-terminal domain 15 109 6.0E-12 T 13-10-2018 IPR003497 BRO N-terminal domain Trebr_2320 2e0649a737d3337beee660033a38f3af 380 Gene3D G3DSA:3.40.630.120 240 379 6.6E-24 T 13-10-2018 Trebr_1543 e10b3ff8d20b97c744cc24f1053f7f57 260 SUPERFAMILY SSF53335 155 247 2.3E-13 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1543 e10b3ff8d20b97c744cc24f1053f7f57 260 Gene3D G3DSA:3.40.50.150 84 248 7.8E-13 T 13-10-2018 Trebr_1543 e10b3ff8d20b97c744cc24f1053f7f57 260 Pfam PF13489 Methyltransferase domain 67 242 8.4E-13 T 13-10-2018 Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 Gene3D G3DSA:3.40.50.300 1 239 1.5E-72 T 13-10-2018 Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 Pfam PF08402 TOBE domain 284 344 2.3E-6 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 Gene3D G3DSA:2.40.50.140 286 348 6.3E-27 T 13-10-2018 Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 Pfam PF00005 ABC transporter 21 162 7.7E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 SUPERFAMILY SSF52540 4 244 5.03E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 SMART SM00382 29 212 2.7E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 SUPERFAMILY SSF50331 237 363 8.02E-26 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Trebr_1266 7d8a4ff2af30ff6f195fef4adb222f7a 370 Gene3D G3DSA:2.40.50.100 240 360 6.3E-27 T 13-10-2018 Trebr_0039 f3074947d59602c8c419193e0ac7850a 299 Pfam PF04018 Domain of unknown function (DUF368) 33 253 2.2E-30 T 13-10-2018 IPR007163 Protein of unknown function DUF368 Trebr_0358 cd366109c2032b0b7df212f89856db4d 325 Pfam PF02653 Branched-chain amino acid transport system / permease component 2 282 3.7E-23 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0160 aac92a03caf08b1d1a9f0e0d2f9e4624 94 Pfam PF12636 Protein of unknown function (DUF3781) 13 82 1.1E-33 T 13-10-2018 IPR024229 Protein of unknown function DUF3781 Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 Pfam PF02384 N-6 DNA Methylase 395 444 2.4E-4 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 421 437 1.5E-16 T 13-10-2018 Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 719 743 1.5E-16 T 13-10-2018 Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 482 496 1.5E-16 T 13-10-2018 Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 683 695 1.5E-16 T 13-10-2018 Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 Pfam PF12950 TaqI-like C-terminal specificity domain 902 1070 3.2E-15 T 13-10-2018 IPR025931 TaqI-like C-terminal specificity domain Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 686 692 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 Pfam PF07669 Eco57I restriction-modification methylase 683 795 2.0E-17 T 13-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 Trebr_2460 1f6217f179daf5fa844b17c5d1bdb494 1124 SUPERFAMILY SSF53335 208 809 4.73E-62 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1780 1a46d19fb5e8c0f49a19c335d0898959 111 SUPERFAMILY SSF118010 1 106 1.83E-19 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily Trebr_1780 1a46d19fb5e8c0f49a19c335d0898959 111 Gene3D G3DSA:3.30.70.1490 2 109 9.7E-17 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily Trebr_1780 1a46d19fb5e8c0f49a19c335d0898959 111 Pfam PF04327 Cysteine protease Prp 1 103 4.3E-20 T 13-10-2018 IPR007422 Cysteine protease Prp Trebr_1333 3b62cefac55e567bef4a34c944289a71 219 Gene3D G3DSA:3.80.10.10 27 216 2.6E-7 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily Trebr_1333 3b62cefac55e567bef4a34c944289a71 219 SUPERFAMILY SSF52047 51 141 1.88E-6 T 13-10-2018 Trebr_1696 abce9e3e9ced4c7fbc0904d4bf5fedc7 207 Hamap MF_00271 V-type ATP synthase subunit D [atpD]. 3 207 19.672 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1696 abce9e3e9ced4c7fbc0904d4bf5fedc7 207 Pfam PF01813 ATP synthase subunit D 12 201 7.9E-44 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1696 abce9e3e9ced4c7fbc0904d4bf5fedc7 207 TIGRFAM TIGR00309 V_ATPase_subD: V-type ATPase, D subunit 5 205 1.8E-35 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1053 1b886a8747f68ee3e6ba591c3d2dd550 345 SUPERFAMILY SSF51395 1 335 1.1E-48 T 13-10-2018 Trebr_1053 1b886a8747f68ee3e6ba591c3d2dd550 345 Pfam PF01207 Dihydrouridine synthase (Dus) 4 267 1.1E-37 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Trebr_1053 1b886a8747f68ee3e6ba591c3d2dd550 345 PIRSF PIRSF006621 1 132 1.6E-19 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Trebr_1053 1b886a8747f68ee3e6ba591c3d2dd550 345 PIRSF PIRSF006621 133 342 1.2E-26 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Trebr_1053 1b886a8747f68ee3e6ba591c3d2dd550 345 Gene3D G3DSA:3.20.20.70 1 268 1.6E-53 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Trebr_1574 1310257342d728dc7f206a74a422287d 184 SUPERFAMILY SSF52266 18 172 2.66E-11 T 13-10-2018 Trebr_1574 1310257342d728dc7f206a74a422287d 184 Gene3D G3DSA:3.40.50.1110 5 175 3.3E-11 T 13-10-2018 IPR036514 SGNH hydrolase superfamily Trebr_1756 dccf31785ee294571678196bc2d5ada7 494 Gene3D G3DSA:3.40.50.720 144 461 3.1E-99 T 13-10-2018 Trebr_1756 dccf31785ee294571678196bc2d5ada7 494 Pfam PF02719 Polysaccharide biosynthesis protein 149 438 3.8E-104 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Trebr_1756 dccf31785ee294571678196bc2d5ada7 494 SUPERFAMILY SSF51735 8 136 2.4E-16 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_1756 dccf31785ee294571678196bc2d5ada7 494 Gene3D G3DSA:3.40.50.720 5 130 2.9E-25 T 13-10-2018 Trebr_1756 dccf31785ee294571678196bc2d5ada7 494 SUPERFAMILY SSF51735 146 452 8.87E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_2356 1e63a9fadd21d2145a1056b6dbcb1e8e 371 Gene3D G3DSA:3.40.1830.10 3 165 3.5E-16 T 13-10-2018 IPR035097 Peptidase M29, N-terminal Trebr_2356 1e63a9fadd21d2145a1056b6dbcb1e8e 371 SUPERFAMILY SSF144052 1 358 6.8E-106 T 13-10-2018 Trebr_2356 1e63a9fadd21d2145a1056b6dbcb1e8e 371 Pfam PF02073 Thermophilic metalloprotease (M29) 3 334 6.7E-59 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 Trebr_1787 54c835db31a2c215dcae83f2e0caef67 305 Gene3D G3DSA:1.10.150.130 79 167 1.1E-5 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal Trebr_1787 54c835db31a2c215dcae83f2e0caef67 305 SUPERFAMILY SSF56349 87 188 1.88E-8 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Trebr_1785 14e5e6e8821606a902b6d9ec13db25d6 78 SUPERFAMILY SSF47598 2 43 2.22E-5 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Trebr_1967 1fe3267a6b40bcf9dae9f3e402c0b7b1 284 Gene3D G3DSA:3.40.50.620 25 198 2.3E-36 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Trebr_1967 1fe3267a6b40bcf9dae9f3e402c0b7b1 284 SUPERFAMILY SSF52374 33 187 6.68E-20 T 13-10-2018 Trebr_1967 1fe3267a6b40bcf9dae9f3e402c0b7b1 284 Pfam PF06574 FAD synthetase 32 179 8.5E-28 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Trebr_1519 ee3b1bcaf4b131e79f3ea942b27a2c43 174 Pfam PF04977 Septum formation initiator 15 90 5.3E-12 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC Trebr_0265 6ace15e482d3d4060ae219e9ee4be9da 312 Pfam PF02653 Branched-chain amino acid transport system / permease component 40 306 6.2E-49 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0379 a0708619e5d37da3edcd97829a214472 215 SUPERFAMILY SSF56784 1 207 2.17E-35 T 13-10-2018 IPR036412 HAD-like superfamily Trebr_0379 a0708619e5d37da3edcd97829a214472 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 180 2.3E-22 T 13-10-2018 Trebr_0379 a0708619e5d37da3edcd97829a214472 215 Gene3D G3DSA:1.10.150.240 17 86 2.2E-32 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Trebr_0379 a0708619e5d37da3edcd97829a214472 215 Gene3D G3DSA:3.40.50.1000 6 193 2.2E-32 T 13-10-2018 IPR023214 HAD superfamily Trebr_0974 9de5d2e6ff1fe3a5c3ff44358b12f223 130 Pfam PF04892 VanZ like family 36 109 9.2E-12 T 13-10-2018 IPR006976 VanZ-like Trebr_1048 605ae50825bb10ae9d53c46c89366cd8 216 SUPERFAMILY SSF53335 7 201 5.32E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_1048 605ae50825bb10ae9d53c46c89366cd8 216 Gene3D G3DSA:3.40.50.150 42 201 4.0E-37 T 13-10-2018 Trebr_1048 605ae50825bb10ae9d53c46c89366cd8 216 Pfam PF13649 Methyltransferase domain 49 142 8.5E-22 T 13-10-2018 Trebr_1295 280478f1800fcf7df3e5c436b40c62ad 216 Pfam PF02517 CAAX protease self-immunity 115 204 1.7E-12 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 Trebr_1418 ba917b42188dc925d826a671a909f746 234 Pfam PF13646 HEAT repeats 104 157 3.4E-8 T 13-10-2018 Trebr_1418 ba917b42188dc925d826a671a909f746 234 SUPERFAMILY SSF48371 101 226 8.86E-7 T 13-10-2018 IPR016024 Armadillo-type fold Trebr_1418 ba917b42188dc925d826a671a909f746 234 Gene3D G3DSA:1.25.10.10 63 193 3.9E-6 T 13-10-2018 IPR011989 Armadillo-like helical Trebr_0943 afcd5fc9bc5f77a0c718e3dae5d39341 241 Pfam PF04620 Flagellar filament outer layer protein Flaa 38 221 2.1E-35 T 13-10-2018 IPR006714 Flagellar filament outer layer protein FlaA GO:0030288|GO:0071973 Trebr_1752 dae449d1fdc2f0ab86f75787b26394f6 271 SUPERFAMILY SSF56176 6 158 8.18E-24 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Trebr_1752 dae449d1fdc2f0ab86f75787b26394f6 271 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 8 157 5.7E-22 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Trebr_1752 dae449d1fdc2f0ab86f75787b26394f6 271 Gene3D G3DSA:3.30.465.10 6 160 9.0E-21 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Trebr_0419 82da39bb026b50a4c86a547186963c77 126 Gene3D G3DSA:2.60.320.10 30 124 9.6E-16 T 13-10-2018 IPR038690 NusG, domain 2 superfamily Trebr_0419 82da39bb026b50a4c86a547186963c77 126 Pfam PF07009 NusG domain II 15 115 3.4E-15 T 13-10-2018 IPR024045 NusG, domain 2 Trebr_2266 38a9a0f4bf3b5dc6cb510f7a7f7ac5c4 299 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 283 6.0E-49 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0915 ff7eb79480ca39a24fd13a1a617f620b 193 SUPERFAMILY SSF56281 1 186 9.14E-36 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_0915 ff7eb79480ca39a24fd13a1a617f620b 193 SMART SM00849 12 169 7.4E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_0915 ff7eb79480ca39a24fd13a1a617f620b 193 Pfam PF00753 Metallo-beta-lactamase superfamily 11 169 5.9E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase Trebr_0915 ff7eb79480ca39a24fd13a1a617f620b 193 Gene3D G3DSA:3.60.15.10 6 192 2.6E-40 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Trebr_1010 6ab40e2c76cb57179fd487e241608a4a 140 Pfam PF04463 Protein of unknown function (DUF523) 3 134 9.9E-39 T 13-10-2018 IPR007553 Domain of unknown function DUF523 Trebr_0440 819c73b095d8680018d3e00cf4fe80d7 393 Pfam PF14897 EpsG family 31 362 2.8E-35 T 13-10-2018 Trebr_0371 cbfb2d0095ffc627d16a887b3bbe2169 395 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 377 8.9E-135 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Trebr_0371 cbfb2d0095ffc627d16a887b3bbe2169 395 Gene3D G3DSA:3.40.50.720 8 364 8.2E-119 T 13-10-2018 Trebr_0371 cbfb2d0095ffc627d16a887b3bbe2169 395 Pfam PF16363 GDP-mannose 4,6 dehydratase 10 363 3.4E-89 T 13-10-2018 IPR016040 NAD(P)-binding domain Trebr_0371 cbfb2d0095ffc627d16a887b3bbe2169 395 SUPERFAMILY SSF51735 8 390 1.61E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily Trebr_0371 cbfb2d0095ffc627d16a887b3bbe2169 395 Gene3D G3DSA:3.90.25.10 239 372 8.2E-119 T 13-10-2018 Trebr_1738 0bc04b3cc793b6552d70913a5cd70a8e 1527 Gene3D G3DSA:2.120.10.10 45 288 3.6E-10 T 13-10-2018 Trebr_1738 0bc04b3cc793b6552d70913a5cd70a8e 1527 SMART SM00304 1098 1155 1.6E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_1738 0bc04b3cc793b6552d70913a5cd70a8e 1527 SUPERFAMILY SSF81606 1202 1362 1.07E-5 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1738 0bc04b3cc793b6552d70913a5cd70a8e 1527 Pfam PF00672 HAMP domain 1100 1151 5.4E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Trebr_1738 0bc04b3cc793b6552d70913a5cd70a8e 1527 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 1215 1364 8.9E-24 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1738 0bc04b3cc793b6552d70913a5cd70a8e 1527 SUPERFAMILY SSF50939 34 306 8.83E-16 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 Trebr_1738 0bc04b3cc793b6552d70913a5cd70a8e 1527 SMART SM00331 1189 1423 2.8E-43 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_1738 0bc04b3cc793b6552d70913a5cd70a8e 1527 Gene3D G3DSA:3.60.40.10 1151 1385 3.2E-37 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Trebr_0014 a2b9232ae3d3b8ba42530362027c20b2 357 Pfam PF00877 NlpC/P60 family 202 314 1.6E-4 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Trebr_1044 c45e776e7e3b98feff3256416c1df7b6 208 Gene3D G3DSA:3.40.50.880 1 208 2.1E-50 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1044 c45e776e7e3b98feff3256416c1df7b6 208 SUPERFAMILY SSF52317 1 176 5.73E-32 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like Trebr_1044 c45e776e7e3b98feff3256416c1df7b6 208 Pfam PF01965 DJ-1/PfpI family 3 174 8.8E-27 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Trebr_2440 7692d281164d9b4a60394c23fb532503 268 Pfam PF08878 Domain of unknown function (DUF1837) 47 225 2.6E-12 T 13-10-2018 IPR014976 Protein of unknown function DUF1837 Trebr_0027 eac46de4b5ae925334b3352d856d2a18 888 SUPERFAMILY SSF51126 416 715 3.14E-5 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor Trebr_0765 f5a0958572bada8ab16c3440b58c42f5 144 SMART SM00448 25 139 2.4E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_0765 f5a0958572bada8ab16c3440b58c42f5 144 Gene3D G3DSA:3.40.50.2300 19 142 1.4E-37 T 13-10-2018 Trebr_0765 f5a0958572bada8ab16c3440b58c42f5 144 SUPERFAMILY SSF52172 23 144 1.71E-34 T 13-10-2018 IPR011006 CheY-like superfamily Trebr_0765 f5a0958572bada8ab16c3440b58c42f5 144 Pfam PF00072 Response regulator receiver domain 27 139 2.3E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Trebr_1890 3b0a260f815e8449d7e498901334b418 302 SUPERFAMILY SSF53448 2 283 7.27E-18 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1890 3b0a260f815e8449d7e498901334b418 302 Gene3D G3DSA:3.90.550.10 1 300 9.4E-94 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1391 d3ee30248f5008215f7e4f5d3d1bb52b 114 SUPERFAMILY SSF48452 33 99 2.32E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0512 39695da04a92d12d39a2a47da829fc44 130 Pfam PF03788 LrgA family 15 106 2.6E-26 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 Trebr_2274 ef75db8db47716e47119be0304ecf10e 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2274 ef75db8db47716e47119be0304ecf10e 37 SUPERFAMILY SSF57840 1 37 1.16E-15 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2274 ef75db8db47716e47119be0304ecf10e 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 1.5E-22 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2274 ef75db8db47716e47119be0304ecf10e 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.265 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2274 ef75db8db47716e47119be0304ecf10e 37 Pfam PF00444 Ribosomal protein L36 1 37 1.1E-17 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Trebr_2274 ef75db8db47716e47119be0304ecf10e 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 2.0E-7 T 13-10-2018 Trebr_2151 1456a6ce662f0a81ede47d73329dd55d 396 Pfam PF02687 FtsX-like permease family 301 389 7.6E-12 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_2151 1456a6ce662f0a81ede47d73329dd55d 396 Pfam PF12704 MacB-like periplasmic core domain 19 239 4.0E-24 T 13-10-2018 IPR025857 MacB-like periplasmic core domain Trebr_0849 60f41d3a330c5ca710f7d1bd1b7bdf39 126 Gene3D G3DSA:4.10.520.10 32 124 1.8E-5 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Trebr_0849 60f41d3a330c5ca710f7d1bd1b7bdf39 126 TIGRFAM TIGR01201 HU_rel: putative DNA-binding protein 1 124 5.0E-23 T 13-10-2018 IPR005902 Putative DNA-binding protein, HU-related Trebr_0849 60f41d3a330c5ca710f7d1bd1b7bdf39 126 Pfam PF00216 Bacterial DNA-binding protein 35 118 1.1E-5 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Trebr_0849 60f41d3a330c5ca710f7d1bd1b7bdf39 126 SUPERFAMILY SSF47729 34 118 1.24E-11 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Trebr_0068 adffc5c75a98715ca8f45f7dfad503b7 347 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 331 8.7E-42 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0866 889e6da715d8c5ea2eab3028eeeec996 422 SMART SM00257 375 419 6.4E-12 T 13-10-2018 IPR018392 LysM domain Trebr_0866 889e6da715d8c5ea2eab3028eeeec996 422 Pfam PF01476 LysM domain 376 419 1.4E-13 T 13-10-2018 IPR018392 LysM domain Trebr_0866 889e6da715d8c5ea2eab3028eeeec996 422 Gene3D G3DSA:1.10.530.10 141 290 5.1E-24 T 13-10-2018 Trebr_0866 889e6da715d8c5ea2eab3028eeeec996 422 Pfam PF01464 Transglycosylase SLT domain 158 259 9.3E-23 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 Trebr_0866 889e6da715d8c5ea2eab3028eeeec996 422 Gene3D G3DSA:3.10.350.10 370 422 7.3E-16 T 13-10-2018 IPR036779 LysM domain superfamily Trebr_0866 889e6da715d8c5ea2eab3028eeeec996 422 SUPERFAMILY SSF54106 374 419 3.92E-11 T 13-10-2018 Trebr_0866 889e6da715d8c5ea2eab3028eeeec996 422 SUPERFAMILY SSF53955 145 293 9.38E-29 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily Trebr_1630 5d50ce752b338d22ef459f45528dbb2a 196 SUPERFAMILY SSF48150 2 186 1.82E-65 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Trebr_1630 5d50ce752b338d22ef459f45528dbb2a 196 Gene3D G3DSA:1.10.340.30 1 186 1.9E-68 T 13-10-2018 Trebr_1630 5d50ce752b338d22ef459f45528dbb2a 196 Pfam PF03352 Methyladenine glycosylase 6 181 1.2E-66 T 13-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 Trebr_2571 07af063d9ed88c295a532ddf6ce5d751 425 Pfam PF02687 FtsX-like permease family 312 417 1.5E-10 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_0956 09fe9658a991800aeead5ebc0bfe6586 329 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 76 259 6.5E-66 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Trebr_0956 09fe9658a991800aeead5ebc0bfe6586 329 Gene3D G3DSA:3.40.50.450 16 306 4.3E-76 T 13-10-2018 Trebr_0956 09fe9658a991800aeead5ebc0bfe6586 329 SUPERFAMILY SSF102405 82 253 6.41E-33 T 13-10-2018 Trebr_0956 09fe9658a991800aeead5ebc0bfe6586 329 Pfam PF02481 DNA recombination-mediator protein A 75 258 1.2E-66 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Trebr_1509 ac28035d96c68eb52fce32060a098c56 764 TIGRFAM TIGR03545 TIGR03545: TIGR03545 family protein 119 699 2.0E-65 T 13-10-2018 IPR019934 Conserved hypothetical protein CHP03545 Trebr_2364 87abf30f045b6f28c5dbbc94fd1fe9e5 407 Pfam PF01594 AI-2E family transporter 48 389 5.4E-43 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like Trebr_1264 9950b5c7a61198f4076959700023011b 381 Pfam PF02653 Branched-chain amino acid transport system / permease component 75 350 2.2E-35 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_1136 a13b594704f21c750e5b7e651d67d9f2 1064 SUPERFAMILY SSF50969 371 498 1.26E-5 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like Trebr_1651 7f8f54862a3c3a406ac8a2648c734eeb 318 Pfam PF00535 Glycosyl transferase family 2 6 171 1.6E-37 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Trebr_1651 7f8f54862a3c3a406ac8a2648c734eeb 318 Gene3D G3DSA:3.90.550.10 2 250 6.8E-55 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1651 7f8f54862a3c3a406ac8a2648c734eeb 318 SUPERFAMILY SSF53448 4 217 3.7E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_1980 d5b738d71f474f0530f486640cf16125 819 SUPERFAMILY SSF51261 783 812 2.67E-7 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_1980 d5b738d71f474f0530f486640cf16125 819 Gene3D G3DSA:2.70.70.10 670 819 6.0E-12 T 13-10-2018 IPR011055 Duplicated hybrid motif Trebr_1980 d5b738d71f474f0530f486640cf16125 819 Pfam PF01551 Peptidase family M23 780 813 1.3E-5 T 13-10-2018 IPR016047 Peptidase M23 Trebr_2049 56628361fcf6ac550bc94e0523d53663 74 Pfam PF04024 PspC domain 15 71 1.1E-22 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal Trebr_1947 380d1680edf7788016036d6697a7a6d5 1283 SUPERFAMILY SSF58113 742 944 2.09E-10 T 13-10-2018 Trebr_1947 380d1680edf7788016036d6697a7a6d5 1283 Gene3D G3DSA:1.20.120.20 775 936 2.5E-8 T 13-10-2018 Trebr_1947 380d1680edf7788016036d6697a7a6d5 1283 Gene3D G3DSA:1.20.120.20 431 587 1.2E-5 T 13-10-2018 Trebr_0245 6fd4867441eeb14a97c8abab681762da 342 SUPERFAMILY SSF69322 40 259 1.19E-7 T 13-10-2018 Trebr_1848 27852d4d57b9c8e652272ed60e8d7cbd 236 SUPERFAMILY SSF56300 1 223 5.7E-22 T 13-10-2018 Trebr_1848 27852d4d57b9c8e652272ed60e8d7cbd 236 Pfam PF00149 Calcineurin-like phosphoesterase 3 205 9.7E-10 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Trebr_1745 31a6ae2e4621c2c85851bf64c3585cd1 119 Pfam PF04519 Polymer-forming cytoskeletal 19 115 1.7E-22 T 13-10-2018 IPR007607 Bactofilin A/B Trebr_2582 3bcdbe68c38290df0f42a2c711826ddd 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 274 9.9E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2582 3bcdbe68c38290df0f42a2c711826ddd 290 Gene3D G3DSA:1.10.3720.10 8 280 2.7E-58 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2582 3bcdbe68c38290df0f42a2c711826ddd 290 SUPERFAMILY SSF161098 14 290 4.39E-62 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1782 bb2bbf8ba6187c23652ad12175543082 233 Gene3D G3DSA:2.60.40.1080 8 96 1.1E-10 T 13-10-2018 Trebr_0517 b73b82a60ccf37a25089d2e6de9c6c99 120 Pfam PF07784 Protein of unknown function (DUF1622) 22 103 2.0E-25 T 13-10-2018 IPR012427 Protein of unknown function DUF1622 Trebr_0435 358834f48c58a8566ba45fb746d84521 253 Pfam PF03942 DTW domain 3 206 1.4E-41 T 13-10-2018 IPR005636 DTW Trebr_0435 358834f48c58a8566ba45fb746d84521 253 SMART SM01144 1 211 2.6E-42 T 13-10-2018 IPR005636 DTW Trebr_2448 9b8b76faae6d29019a514eeaccdb9891 234 Gene3D G3DSA:1.10.10.10 11 124 3.7E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2448 9b8b76faae6d29019a514eeaccdb9891 234 Pfam PF13730 Helix-turn-helix domain 26 79 2.0E-11 T 13-10-2018 Trebr_2120 b46ead6e0ac3ab016169fd0a66d1ac8a 409 Pfam PF07907 YibE/F-like protein 145 382 1.2E-71 T 13-10-2018 IPR012507 YibE/F-like Trebr_0088 eb3d3a98783569a18ebf49923fd6138a 299 Pfam PF12679 ABC-2 family transporter protein 115 296 2.6E-12 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 Trebr_0703 ba9b1a3ec6839fe96655b486c97da40d 271 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 21 271 3.1E-118 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 Trebr_0703 ba9b1a3ec6839fe96655b486c97da40d 271 Pfam PF00005 ABC transporter 36 191 4.7E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Trebr_0703 ba9b1a3ec6839fe96655b486c97da40d 271 Gene3D G3DSA:3.40.50.300 20 269 4.3E-61 T 13-10-2018 Trebr_0703 ba9b1a3ec6839fe96655b486c97da40d 271 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Trebr_0703 ba9b1a3ec6839fe96655b486c97da40d 271 SUPERFAMILY SSF52540 23 257 4.02E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_0703 ba9b1a3ec6839fe96655b486c97da40d 271 SMART SM00382 45 242 2.0E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain Trebr_0392 9ad53e999d8ae538b29d777f05fcac79 280 Gene3D G3DSA:3.20.20.150 1 274 2.4E-38 T 13-10-2018 Trebr_0392 9ad53e999d8ae538b29d777f05fcac79 280 SUPERFAMILY SSF51658 14 263 1.26E-29 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily Trebr_0392 9ad53e999d8ae538b29d777f05fcac79 280 Pfam PF01261 Xylose isomerase-like TIM barrel 20 235 1.6E-22 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Trebr_1644 e110bf62fe017a068caad64201398f83 485 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 328 465 3.7E-18 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Trebr_1644 e110bf62fe017a068caad64201398f83 485 Pfam PF01943 Polysaccharide biosynthesis protein 8 273 6.8E-32 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Trebr_0295 90d09b88594e74c271eac2d280580cd1 118 Pfam PF00892 EamA-like transporter family 13 110 1.8E-8 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Trebr_0295 90d09b88594e74c271eac2d280580cd1 118 SUPERFAMILY SSF103481 14 115 4.05E-12 T 13-10-2018 Trebr_1505 3126705c530a167a30e5004443e8064a 592 SUPERFAMILY SSF50998 57 363 4.71E-15 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Trebr_1505 3126705c530a167a30e5004443e8064a 592 Pfam PF13360 PQQ-like domain 60 155 5.0E-8 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Trebr_1986 2044b4ba7cab44a7119ff0cbbbb487d7 440 Pfam PF14535 AMP-binding enzyme C-terminal domain 339 435 4.3E-26 T 13-10-2018 IPR028154 AMP-dependent ligase, C-terminal Trebr_1986 2044b4ba7cab44a7119ff0cbbbb487d7 440 Pfam PF00501 AMP-binding enzyme 83 289 4.6E-19 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Trebr_1986 2044b4ba7cab44a7119ff0cbbbb487d7 440 Gene3D G3DSA:3.40.50.12780 3 330 6.5E-123 T 13-10-2018 Trebr_1986 2044b4ba7cab44a7119ff0cbbbb487d7 440 Gene3D G3DSA:3.30.300.30 331 437 7.3E-29 T 13-10-2018 Trebr_1986 2044b4ba7cab44a7119ff0cbbbb487d7 440 SUPERFAMILY SSF56801 32 399 2.49E-62 T 13-10-2018 Trebr_1986 2044b4ba7cab44a7119ff0cbbbb487d7 440 PIRSF PIRSF006444 1 437 1.8E-172 T 13-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 Trebr_1901 b9666418b85add03f30b3efd7d775c06 257 Gene3D G3DSA:1.10.3720.10 53 249 6.7E-25 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1901 b9666418b85add03f30b3efd7d775c06 257 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 247 1.7E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_1901 b9666418b85add03f30b3efd7d775c06 257 SUPERFAMILY SSF161098 57 240 2.49E-25 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0951 841810638fa91b393e5808b24abf0ae8 276 Pfam PF03799 Cell division protein FtsQ 142 263 3.7E-5 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB Trebr_0951 841810638fa91b393e5808b24abf0ae8 276 Pfam PF08478 POTRA domain, FtsQ-type 60 124 6.5E-13 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type Trebr_0510 0d5002240ac03730c27d9e44965ca6be 381 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 28 111 3.7E-10 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Trebr_0510 0d5002240ac03730c27d9e44965ca6be 381 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 233 339 3.4E-9 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Trebr_0510 0d5002240ac03730c27d9e44965ca6be 381 SUPERFAMILY SSF53335 24 336 5.95E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Trebr_0510 0d5002240ac03730c27d9e44965ca6be 381 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 254 260 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Trebr_0510 0d5002240ac03730c27d9e44965ca6be 381 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 28 44 1.9E-6 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Trebr_0510 0d5002240ac03730c27d9e44965ca6be 381 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 78 91 1.9E-6 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Trebr_0510 0d5002240ac03730c27d9e44965ca6be 381 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 251 263 1.9E-6 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Trebr_0556 972d921f6c1b0aec62e8b37dde65603a 205 Gene3D G3DSA:3.40.50.10610 47 196 5.9E-9 T 13-10-2018 Trebr_0556 972d921f6c1b0aec62e8b37dde65603a 205 Pfam PF13036 Peptidoglycan-synthase activator LpoB 48 191 1.7E-35 T 13-10-2018 IPR014094 Penicillin-binding protein activator LpoB Trebr_1702 6dfa8f9a9d8223f172b4c3e497c670d7 658 Pfam PF01496 V-type ATPase 116kDa subunit family 550 652 8.6E-12 T 13-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1702 6dfa8f9a9d8223f172b4c3e497c670d7 658 Pfam PF01496 V-type ATPase 116kDa subunit family 210 380 5.3E-16 T 13-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_2054 b5e6c7caf9b6d21179935024804fbc15 394 Pfam PF04230 Polysaccharide pyruvyl transferase 15 323 7.5E-38 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase Trebr_0434 3014a688c246556d2e14ede0a2500416 340 Pfam PF03600 Citrate transporter 22 261 1.1E-18 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Trebr_0381 8388bcea29688fc96cca11f474c7a562 1756 Gene3D G3DSA:2.60.40.10 279 373 7.1E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0381 8388bcea29688fc96cca11f474c7a562 1756 Gene3D G3DSA:2.60.40.10 1130 1225 7.6E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_0381 8388bcea29688fc96cca11f474c7a562 1756 Gene3D G3DSA:2.60.40.650 829 930 8.0E-6 T 13-10-2018 Trebr_0381 8388bcea29688fc96cca11f474c7a562 1756 SUPERFAMILY SSF81296 835 926 2.87E-6 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_1877 6f6c9fa6a4cb11996ce891aa5b787235 244 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 2 134 1.2E-20 T 13-10-2018 IPR002654 Glycosyl transferase, family 25 Trebr_0244 79c696a1f5ccd37a19a9e79d589a7a41 493 SUPERFAMILY SSF55486 313 372 1.39E-5 T 13-10-2018 Trebr_1598 bd8746c707185fcddd913317d0d18eb8 240 Pfam PF04347 Flagellar biosynthesis protein, FliO 99 183 3.4E-10 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 Trebr_1510 592baae0cf7ce629ee85cb421537e543 175 TIGRFAM TIGR03546 TIGR03546: TIGR03546 family protein 4 154 1.1E-38 T 13-10-2018 IPR019935 Conserved hypothetical protein CHP03546 Trebr_0502 6e55fee2c3432ed0e1113f66b0cbb584 412 SUPERFAMILY SSF109604 35 408 1.75E-52 T 13-10-2018 Trebr_0502 6e55fee2c3432ed0e1113f66b0cbb584 412 Pfam PF01966 HD domain 72 219 5.2E-9 T 13-10-2018 IPR006674 HD domain Trebr_0502 6e55fee2c3432ed0e1113f66b0cbb584 412 SMART SM00471 68 229 4.0E-5 T 13-10-2018 IPR003607 HD/PDEase domain Trebr_1962 a61174b709953d5a822dbd0b99bc0821 505 Gene3D G3DSA:2.60.40.10 405 503 2.9E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1962 a61174b709953d5a822dbd0b99bc0821 505 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 132 283 3.1E-10 T 13-10-2018 Trebr_1962 a61174b709953d5a822dbd0b99bc0821 505 SUPERFAMILY SSF49265 394 502 1.07E-8 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Trebr_1962 a61174b709953d5a822dbd0b99bc0821 505 Gene3D G3DSA:2.60.120.200 126 302 1.4E-12 T 13-10-2018 Trebr_1962 a61174b709953d5a822dbd0b99bc0821 505 SUPERFAMILY SSF49899 77 285 1.45E-16 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily Trebr_1506 956189487b28aa9623bad5427d7f7e72 530 Pfam PF05262 Borrelia P83/100 protein 31 502 4.9E-122 T 13-10-2018 IPR007926 Borrelia P83100 Trebr_0075 be5162d788562d0d01b56b7f9d5c44f3 161 Pfam PF03783 Curli production assembly/transport component CsgG 81 135 1.7E-5 T 13-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 Trebr_2185 7fe8c47e1ad347376c00ebec45d208fe 118 Pfam PF08308 PEGA domain 28 79 1.3E-6 T 13-10-2018 IPR013229 PEGA Trebr_0550 2cffd4329a0d55eed4a5f9ca8a3c3547 356 Pfam PF00953 Glycosyl transferase family 4 94 276 4.5E-27 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Trebr_0550 2cffd4329a0d55eed4a5f9ca8a3c3547 356 ProSitePatterns PS01348 MraY family signature 2. 180 191 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Trebr_2461 7cbea1eaabc4138d9c08b7b3a1fcfc15 292 Pfam PF12950 TaqI-like C-terminal specificity domain 89 250 8.3E-17 T 13-10-2018 IPR025931 TaqI-like C-terminal specificity domain Trebr_0937 c854f49ed6c552f649e0c598ebf8c4e9 164 SUPERFAMILY SSF57997 6 99 3.92E-5 T 13-10-2018 Trebr_0937 c854f49ed6c552f649e0c598ebf8c4e9 164 Pfam PF06005 Cell division protein ZapB 3 71 8.9E-9 T 13-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 Trebr_0835 0a645a1e96d70dd95dd4e7ae498e2544 270 Pfam PF09674 Protein of unknown function (DUF2400) 27 265 1.1E-59 T 13-10-2018 IPR014127 Conserved hypothetical protein CHP02757 Trebr_0835 0a645a1e96d70dd95dd4e7ae498e2544 270 TIGRFAM TIGR02757 TIGR02757: TIGR02757 family protein 23 266 3.6E-49 T 13-10-2018 IPR014127 Conserved hypothetical protein CHP02757 Trebr_1174 75ca971ffff9f762ca4385efc0915b69 125 Gene3D G3DSA:2.60.40.730 3 124 5.7E-30 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 Trebr_1174 75ca971ffff9f762ca4385efc0915b69 125 Pfam PF01880 Desulfoferrodoxin 40 123 1.2E-17 T 13-10-2018 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain GO:0005506|GO:0016491|GO:0055114 Trebr_1174 75ca971ffff9f762ca4385efc0915b69 125 SUPERFAMILY SSF49367 39 123 1.23E-25 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 Trebr_2351 86e83cc29b1685abcb3d3993738d0519 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 283 1.6E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2351 86e83cc29b1685abcb3d3993738d0519 300 SUPERFAMILY SSF161098 61 288 3.4E-53 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2351 86e83cc29b1685abcb3d3993738d0519 300 Gene3D G3DSA:1.10.3720.10 57 297 4.9E-60 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0527 7f8b418c21f70945e6bacc7c5780b884 361 Pfam PF13413 Helix-turn-helix domain 8 67 6.0E-20 T 13-10-2018 Trebr_0527 7f8b418c21f70945e6bacc7c5780b884 361 Gene3D G3DSA:1.10.260.40 1 89 6.5E-23 T 13-10-2018 Trebr_1849 e68fd015e7d6a1647f95a56fdb9acbfd 301 SUPERFAMILY SSF110849 54 142 9.07E-8 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Trebr_0343 150e13b4ebc7ed46f0ba2cb5e75c697a 439 Pfam PF11922 Domain of unknown function (DUF3440) 241 424 4.2E-84 T 13-10-2018 IPR021845 Protein of unknown function DUF3440 Trebr_0343 150e13b4ebc7ed46f0ba2cb5e75c697a 439 SUPERFAMILY SSF52402 9 235 6.4E-38 T 13-10-2018 Trebr_0343 150e13b4ebc7ed46f0ba2cb5e75c697a 439 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 27 238 1.1E-12 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 Trebr_0374 664175bf9ee2df5feb9ed5a6a8ebe52e 291 Gene3D G3DSA:3.90.550.10 1 291 2.2E-79 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0374 664175bf9ee2df5feb9ed5a6a8ebe52e 291 SUPERFAMILY SSF53448 1 274 2.25E-85 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Trebr_0374 664175bf9ee2df5feb9ed5a6a8ebe52e 291 Pfam PF00483 Nucleotidyl transferase 2 241 9.4E-68 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Trebr_0374 664175bf9ee2df5feb9ed5a6a8ebe52e 291 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 288 1.6E-142 T 13-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Trebr_0365 1c5e4e5d0736dac07195cdfb2b1599d3 798 Pfam PF13625 Helicase conserved C-terminal domain 479 553 9.5E-9 T 13-10-2018 IPR032830 Helicase XPB/Ssl2, N-terminal domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 Trebr_0069 12ac82fb74f0b92a67b4733a4171ba0d 315 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 284 3.4E-35 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_2039 d7fc92ac6984b065e1a40eea67965dda 274 Pfam PF13630 SdpI/YhfL protein family 189 260 3.5E-14 T 13-10-2018 IPR025962 SdpI/YhfL protein family Trebr_1913 7a1ae48e9606c99d6e5e218ebaf2e7de 354 Gene3D G3DSA:3.40.190.170 26 350 7.7E-68 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Trebr_1913 7a1ae48e9606c99d6e5e218ebaf2e7de 354 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 37 325 9.3E-45 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Trebr_2478 727c6cb094c64ce34dffc0ee5dbfeeed 363 SUPERFAMILY SSF81345 15 351 5.75E-69 T 13-10-2018 IPR037294 ABC transporter, BtuC-like Trebr_2478 727c6cb094c64ce34dffc0ee5dbfeeed 363 Pfam PF01032 FecCD transport family 26 351 6.8E-81 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Trebr_2478 727c6cb094c64ce34dffc0ee5dbfeeed 363 Gene3D G3DSA:1.10.3470.10 13 359 1.4E-90 T 13-10-2018 IPR037294 ABC transporter, BtuC-like Trebr_0377 7556d1b58f472986b40a3ecf319c1521 114 SUPERFAMILY SSF75138 3 111 9.42E-12 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Trebr_0829 53c431cd205aa56b8f5058b0b03fc5d5 134 SMART SM01323 14 96 5.9E-42 T 13-10-2018 IPR003849 Preprotein translocase YajC Trebr_0829 53c431cd205aa56b8f5058b0b03fc5d5 134 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 15 96 2.1E-30 T 13-10-2018 IPR003849 Preprotein translocase YajC Trebr_0829 53c431cd205aa56b8f5058b0b03fc5d5 134 Pfam PF02699 Preprotein translocase subunit 17 93 2.3E-29 T 13-10-2018 IPR003849 Preprotein translocase YajC Trebr_0829 53c431cd205aa56b8f5058b0b03fc5d5 134 PRINTS PR01853 Bacterial YajC preprotein translocase signature 54 72 2.6E-14 T 13-10-2018 IPR003849 Preprotein translocase YajC Trebr_0829 53c431cd205aa56b8f5058b0b03fc5d5 134 PRINTS PR01853 Bacterial YajC preprotein translocase signature 16 36 2.6E-14 T 13-10-2018 IPR003849 Preprotein translocase YajC Trebr_2071 9967f52fa1ae72bb7d5b1043dcc785fd 226 Gene3D G3DSA:3.40.50.300 9 222 5.6E-15 T 13-10-2018 Trebr_2071 9967f52fa1ae72bb7d5b1043dcc785fd 226 SUPERFAMILY SSF52540 11 166 6.11E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Trebr_2071 9967f52fa1ae72bb7d5b1043dcc785fd 226 Pfam PF13481 AAA domain 9 136 2.2E-6 T 13-10-2018 Trebr_2583 5678fb00ebe4ad8c6c210983a149c3cb 303 SUPERFAMILY SSF161098 5 298 7.98E-40 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_2583 5678fb00ebe4ad8c6c210983a149c3cb 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 293 1.8E-11 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2583 5678fb00ebe4ad8c6c210983a149c3cb 303 Gene3D G3DSA:1.10.3720.10 50 301 5.3E-45 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0537 8da510f1692754f278320ab493bff57b 387 Pfam PF02653 Branched-chain amino acid transport system / permease component 40 376 1.6E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0331 57540e4c10106117166875d6ba3ef7f2 199 SUPERFAMILY SSF55874 3 109 6.55E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0331 57540e4c10106117166875d6ba3ef7f2 199 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 5 106 4.0E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Trebr_0331 57540e4c10106117166875d6ba3ef7f2 199 Gene3D G3DSA:3.30.565.10 2 111 1.2E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0558 a40b2a3e7460a8d6afbe672d1f94d2c9 344 Pfam PF02169 LPP20 lipoprotein 31 133 3.1E-8 T 13-10-2018 IPR024952 Lipoprotein LPP20-like Trebr_0467 b4a56a4487c754e01f84c2e73761014a 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 304 3.0E-10 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_0467 b4a56a4487c754e01f84c2e73761014a 312 Gene3D G3DSA:1.10.3720.10 62 310 3.6E-50 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0467 b4a56a4487c754e01f84c2e73761014a 312 SUPERFAMILY SSF161098 64 296 8.24E-44 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_1464 c19c5bc06bc90090d45e71ca1fdeaa4c 239 Gene3D G3DSA:1.10.10.1320 9 58 2.3E-5 T 13-10-2018 Trebr_0118 d37de7d094d6b38e8ea85c326df82652 314 SUPERFAMILY SSF53613 105 256 8.81E-9 T 13-10-2018 IPR029056 Ribokinase-like Trebr_0077 ed0d81ed97b9494d90db4e351e75432a 49 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 1 27 2.3E-5 T 13-10-2018 IPR019239 Bacterial antitoxin of type II TA system, VapB Trebr_0617 04a5cdadc3ada6822777431d7c346b7f 192 Gene3D G3DSA:1.10.3210.10 14 176 1.1E-15 T 13-10-2018 Trebr_0617 04a5cdadc3ada6822777431d7c346b7f 192 SUPERFAMILY SSF109604 22 158 5.83E-20 T 13-10-2018 Trebr_0314 4f8899db191dcd1ec4aaef28c01b292a 232 PRINTS PR01837 MgtC/SapB protein signature 75 97 1.3E-36 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Trebr_0314 4f8899db191dcd1ec4aaef28c01b292a 232 PRINTS PR01837 MgtC/SapB protein signature 44 62 1.3E-36 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Trebr_0314 4f8899db191dcd1ec4aaef28c01b292a 232 PRINTS PR01837 MgtC/SapB protein signature 102 126 1.3E-36 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Trebr_0314 4f8899db191dcd1ec4aaef28c01b292a 232 PRINTS PR01837 MgtC/SapB protein signature 25 44 1.3E-36 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Trebr_0314 4f8899db191dcd1ec4aaef28c01b292a 232 Pfam PF02308 MgtC family 23 148 4.2E-32 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Trebr_0153 04d50ad935c6b9d2add2ecee17b76298 440 Pfam PF01554 MatE 249 400 4.5E-9 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0153 04d50ad935c6b9d2add2ecee17b76298 440 Pfam PF01554 MatE 23 184 1.3E-24 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0153 04d50ad935c6b9d2add2ecee17b76298 440 PIRSF PIRSF006603 12 440 2.6E-55 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0178 832b18882bdfdc4c5b8c7e35d523b3c8 344 Gene3D G3DSA:3.90.1150.10 6 336 2.3E-106 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Trebr_0178 832b18882bdfdc4c5b8c7e35d523b3c8 344 Pfam PF01212 Beta-eliminating lyase 26 289 4.0E-23 T 13-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Trebr_0178 832b18882bdfdc4c5b8c7e35d523b3c8 344 SUPERFAMILY SSF53383 2 343 1.34E-74 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Trebr_0178 832b18882bdfdc4c5b8c7e35d523b3c8 344 Gene3D G3DSA:3.40.640.10 13 254 2.3E-106 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Trebr_1632 54c1bc9a97294d718d1835f92c11bf9e 221 Pfam PF02397 Bacterial sugar transferase 3 196 9.1E-49 T 13-10-2018 IPR003362 Bacterial sugar transferase Trebr_0657 f685af65cec5aadf9db23bee8b141b08 456 PIRSF PIRSF002746 5 456 1.3E-134 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Trebr_0657 f685af65cec5aadf9db23bee8b141b08 456 Pfam PF02447 GntP family permease 10 454 8.7E-122 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Trebr_0657 f685af65cec5aadf9db23bee8b141b08 456 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 10 455 1.7E-97 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Trebr_0799 424f629c7feb4aaab6c4db164f34f521 220 SUPERFAMILY SSF161098 12 202 5.23E-43 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0799 424f629c7feb4aaab6c4db164f34f521 220 Gene3D G3DSA:1.10.3720.10 5 216 1.3E-47 T 13-10-2018 IPR035906 MetI-like superfamily Trebr_0799 424f629c7feb4aaab6c4db164f34f521 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 212 6.9E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Trebr_2118 079d9a7612b91ba27bfbd91fbb51e710 184 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 125 176 3.0E-7 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 Trebr_0050 8ac7d9b16a4d83eb76c4e45eb61f4fbf 371 Pfam PF01757 Acyltransferase family 17 347 1.0E-19 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Trebr_0450 0a2fc93759903c95ebe7bcec05b07630 459 Pfam PF06245 Protein of unknown function (DUF1015) 23 451 3.5E-82 T 13-10-2018 IPR008323 Uncharacterised conserved protein UCP033563 Trebr_1524 7500ed8d30f964de27feea864049a611 444 Gene3D G3DSA:3.30.70.270 274 423 1.7E-5 T 13-10-2018 Trebr_1524 7500ed8d30f964de27feea864049a611 444 SUPERFAMILY SSF55073 279 411 7.77E-7 T 13-10-2018 IPR029787 Nucleotide cyclase Trebr_1524 7500ed8d30f964de27feea864049a611 444 SMART SM00267 256 422 0.0053 T 13-10-2018 IPR000160 GGDEF domain Trebr_2420 6f663fadd5f9074e9a7327568f955511 281 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 75 278 2.5E-62 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 Trebr_2420 6f663fadd5f9074e9a7327568f955511 281 Pfam PF03006 Haemolysin-III related 72 272 5.6E-37 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 Trebr_1284 dbcb1c27c42c883de3421216d77c1ab2 246 Pfam PF04474 Protein of unknown function (DUF554) 3 238 8.4E-69 T 13-10-2018 IPR007563 Protein of unknown function DUF554 Trebr_0639 ca91b5534c6acb523284c12505a14898 185 SUPERFAMILY SSF55874 37 103 3.27E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0639 ca91b5534c6acb523284c12505a14898 185 Gene3D G3DSA:3.30.565.10 3 133 1.0E-7 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Trebr_0511 89887225914489a98d4aad1ddbd08e72 235 Pfam PF04172 LrgB-like family 23 233 4.3E-71 T 13-10-2018 IPR007300 CidB/LrgB family Trebr_1214 c323b9055dd36b21d91adc8308b528ab 129 Pfam PF11026 Protein of unknown function (DUF2721) 6 122 2.4E-33 T 13-10-2018 IPR021279 Protein of unknown function DUF2721 Trebr_0867 d4bdabd55bc25bf34619838010c7bc26 347 Gene3D G3DSA:1.25.40.10 26 250 1.2E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_0867 d4bdabd55bc25bf34619838010c7bc26 347 SUPERFAMILY SSF48452 55 195 1.37E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2534 46e0c09f1f8c5251004335a8c958219a 443 Pfam PF01554 MatE 244 401 5.2E-18 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2534 46e0c09f1f8c5251004335a8c958219a 443 Pfam PF01554 MatE 21 181 6.9E-26 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2534 46e0c09f1f8c5251004335a8c958219a 443 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 416 2.9E-45 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_2534 46e0c09f1f8c5251004335a8c958219a 443 PIRSF PIRSF006603 1 442 3.8E-59 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_1187 4fdd93354d5ca971714729ce33caf34f 208 Hamap MF_00271 V-type ATP synthase subunit D [atpD]. 1 198 17.18 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1187 4fdd93354d5ca971714729ce33caf34f 208 TIGRFAM TIGR00309 V_ATPase_subD: V-type ATPase, D subunit 1 196 8.8E-45 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_1187 4fdd93354d5ca971714729ce33caf34f 208 Pfam PF01813 ATP synthase subunit D 10 193 1.8E-41 T 13-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Trebr_2062 64930145bdae2c03f45861163b9d75db 304 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Trebr_2062 64930145bdae2c03f45861163b9d75db 304 SUPERFAMILY SSF53613 1 288 8.11E-58 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2062 64930145bdae2c03f45861163b9d75db 304 Pfam PF00294 pfkB family carbohydrate kinase 1 288 7.0E-48 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB Trebr_2062 64930145bdae2c03f45861163b9d75db 304 Gene3D G3DSA:3.40.1190.20 1 296 8.4E-62 T 13-10-2018 IPR029056 Ribokinase-like Trebr_2062 64930145bdae2c03f45861163b9d75db 304 PRINTS PR00990 Ribokinase signature 6 27 7.0E-8 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_2062 64930145bdae2c03f45861163b9d75db 304 PRINTS PR00990 Ribokinase signature 215 226 7.0E-8 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_2062 64930145bdae2c03f45861163b9d75db 304 PRINTS PR00990 Ribokinase signature 176 191 7.0E-8 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 Trebr_2010 1d3643009c92b46de0bc9d496dd991c1 260 SUPERFAMILY SSF46894 187 255 6.8E-7 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Trebr_2010 1d3643009c92b46de0bc9d496dd991c1 260 Gene3D G3DSA:1.10.10.10 173 259 5.9E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Trebr_2474 0d340890095cc3d7407d1ffb567d5b65 240 Pfam PF01061 ABC-2 type transporter 7 203 1.3E-21 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Trebr_2052 d63a6ed7ae0b374668892637544aa3b5 474 Pfam PF01943 Polysaccharide biosynthesis protein 7 268 1.5E-23 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Trebr_2052 d63a6ed7ae0b374668892637544aa3b5 474 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 329 458 6.2E-13 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Trebr_2036 5fdd267a7959c72d543c4298ca16c669 265 Pfam PF02754 Cysteine-rich domain 148 235 2.3E-8 T 13-10-2018 IPR004017 Cysteine-rich domain Trebr_2036 5fdd267a7959c72d543c4298ca16c669 265 Pfam PF02754 Cysteine-rich domain 5 85 4.5E-10 T 13-10-2018 IPR004017 Cysteine-rich domain Trebr_2428 065dcf232ca8b793e6ae8421083aad27 473 PIRSF PIRSF006247 1 473 3.6E-173 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Trebr_2428 065dcf232ca8b793e6ae8421083aad27 473 Pfam PF02386 Cation transport protein 31 253 6.8E-41 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Trebr_2428 065dcf232ca8b793e6ae8421083aad27 473 Pfam PF02386 Cation transport protein 288 467 3.8E-25 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Trebr_1152 d32954ab46fda3643a6bc9e51ed6e5e4 160 Pfam PF02674 Colicin V production protein 6 145 6.0E-23 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 Trebr_0851 2634d0951f00573746fc0c35e359e55d 278 Pfam PF00999 Sodium/hydrogen exchanger family 23 169 1.7E-8 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Trebr_2552 5a99f25e7b581e9bd67b5cf629712b11 297 Pfam PF14267 Domain of unknown function (DUF4357) 234 289 8.6E-17 T 13-10-2018 IPR025579 Domain of unknown function DUF4357 Trebr_2006 c8c20aa10e7ba01849cebdb9699c2db0 446 SUPERFAMILY SSF53474 58 219 1.02E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold Trebr_0944 248f8eccdabdadbfafe3d4543bd43783 241 Pfam PF04620 Flagellar filament outer layer protein Flaa 32 230 2.4E-46 T 13-10-2018 IPR006714 Flagellar filament outer layer protein FlaA GO:0030288|GO:0071973 Trebr_1603 71f946b74da535f9442368fb9df3857a 260 Pfam PF01618 MotA/TolQ/ExbB proton channel family 103 219 1.3E-22 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Trebr_1603 71f946b74da535f9442368fb9df3857a 260 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 185 202 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site Trebr_0744 f13f85d8af0a45aa822ed1a7495af38a 387 Pfam PF14897 EpsG family 35 354 1.2E-37 T 13-10-2018 Trebr_1523 e5afdbfa2b3feeb9bf285edfc1804fe7 511 Pfam PF01973 Protein of unknown function DUF115 195 349 7.5E-25 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like Trebr_2342 1d0b608d0f1c68e398c7dccc1666644f 146 Pfam PF04519 Polymer-forming cytoskeletal 12 108 8.2E-26 T 13-10-2018 IPR007607 Bactofilin A/B Trebr_1895 329e19f0ccb970c3390eab432222c4bb 186 Pfam PF02417 Chromate transporter 4 182 1.3E-40 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Trebr_1467 787656b5ac717810faa65c2789335014 200 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 73 194 1.9E-11 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Trebr_1249 71ef6d0f350831431f8811539f674557 281 SUPERFAMILY SSF81345 5 262 1.7E-30 T 13-10-2018 IPR037294 ABC transporter, BtuC-like Trebr_1249 71ef6d0f350831431f8811539f674557 281 Pfam PF00950 ABC 3 transport family 11 262 3.6E-56 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Trebr_1575 0629a9eea756c87b83b9f0288db2ac9c 119 Pfam PF03733 Inner membrane component domain 4 53 2.1E-16 T 13-10-2018 IPR005185 Inner membrane component domain Trebr_1575 0629a9eea756c87b83b9f0288db2ac9c 119 Pfam PF03733 Inner membrane component domain 66 115 1.6E-17 T 13-10-2018 IPR005185 Inner membrane component domain Trebr_1575 0629a9eea756c87b83b9f0288db2ac9c 119 PIRSF PIRSF028777 1 119 1.0E-38 T 13-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 Trebr_0564 a091a69b96edb2a5839b9ecd2de8e703 134 Gene3D G3DSA:3.30.1330.80 2 134 1.4E-44 T 13-10-2018 Trebr_0564 a091a69b96edb2a5839b9ecd2de8e703 134 SUPERFAMILY SSF117856 3 129 3.14E-35 T 13-10-2018 Trebr_0564 a091a69b96edb2a5839b9ecd2de8e703 134 Pfam PF03479 Domain of unknown function (DUF296) 3 110 1.1E-26 T 13-10-2018 IPR005175 PPC domain Trebr_2165 0102a64b50a0d571d4a94337e5dece87 157 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 20 150 4.4E-20 T 13-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Trebr_2525 e6c0ed57a86c16a4ffcd396fd654d91e 227 Pfam PF04298 Putative neutral zinc metallopeptidase 7 222 2.0E-88 T 13-10-2018 IPR007395 Putative neutral zinc metallopeptidase Trebr_1694 97c68c841ba756767f41d68e09cac692 136 Gene3D G3DSA:3.40.50.360 5 135 1.9E-5 T 13-10-2018 IPR029039 Flavoprotein-like superfamily Trebr_2332 3c1bd7c980898a900195be19917effae 526 Pfam PF17239 Family of unknown function (DUF5312) 303 490 1.9E-9 T 13-10-2018 IPR035196 Protein of unknown function DUF5312 Trebr_0431 735335c1921606b980c2c3354bfc9e10 434 Pfam PF13201 Putative carbohydrate metabolism domain 195 432 7.6E-22 T 13-10-2018 IPR025112 Putative carbohydrate metabolism domain Trebr_0431 735335c1921606b980c2c3354bfc9e10 434 Gene3D G3DSA:2.60.120.890 191 434 2.0E-19 T 13-10-2018 IPR038653 Putative carbohydrate metabolism domain superfamily Trebr_1896 3eb4f9b81655e83922905454e96c86c6 193 Pfam PF02417 Chromate transporter 13 177 2.7E-42 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Trebr_0349 f75c7ab251108f8aa6c00ceaec7d8277 102 SUPERFAMILY SSF81296 24 101 1.29E-17 T 13-10-2018 IPR014756 Immunoglobulin E-set Trebr_0349 f75c7ab251108f8aa6c00ceaec7d8277 102 Pfam PF16561 Glycogen recognition site of AMP-activated protein kinase 26 77 1.7E-7 T 13-10-2018 IPR032640 AMP-activated protein kinase, glycogen-binding domain Reactome: R-HSA-1445148|Reactome: R-HSA-1632852|Reactome: R-HSA-2151209|Reactome: R-HSA-380972|Reactome: R-HSA-5628897|Reactome: R-HSA-6804756 Trebr_0349 f75c7ab251108f8aa6c00ceaec7d8277 102 Gene3D G3DSA:2.60.40.10 4 101 3.6E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold Trebr_1126 f7db80b5f1b1c95232e413aad40bdf16 178 SUPERFAMILY SSF56112 12 172 1.27E-12 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily Trebr_0485 135259a68ec1690a58c6537fb12ff279 355 Pfam PF10974 Protein of unknown function (DUF2804) 16 351 2.8E-43 T 13-10-2018 IPR021243 Protein of unknown function DUF2804 Trebr_0117 ff6af373931ff74c4e1f91e76088590c 396 SUPERFAMILY SSF144052 16 389 3.27E-40 T 13-10-2018 Trebr_2108 6baf839e2b0ff50ea48616d58936349b 135 Gene3D G3DSA:2.40.10.220 2 114 2.8E-5 T 13-10-2018 Trebr_1924 83d24bb7e2d3b15b42a9d17a667c4093 499 Gene3D G3DSA:2.60.120.260 334 499 1.5E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily Trebr_1924 83d24bb7e2d3b15b42a9d17a667c4093 499 Pfam PF13290 Chitobiase/beta-hexosaminidase C-terminal domain 268 328 1.4E-14 T 13-10-2018 Trebr_1975 82a707363f54333141ec6fa08cdc62db 425 Gene3D G3DSA:1.10.1070.20 216 342 7.8E-11 T 13-10-2018 Trebr_0213 85b301340a98884eeabbdb8fbcc4436f 220 Pfam PF14358 Domain of unknown function (DUF4405) 74 132 1.6E-11 T 13-10-2018 IPR025517 Domain of unknown function DUF4405 Trebr_1241 78783fa043a09a3c91dbf6b753b1cd69 259 Pfam PF02535 ZIP Zinc transporter 110 254 1.7E-19 T 13-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Trebr_2156 4b09ff8f9155551e600d23d4f3f6e3c3 174 Gene3D G3DSA:2.60.120.380 69 173 6.7E-5 T 13-10-2018 Trebr_0202 de99cb532b27128c2e9baf2de6a1dbf4 186 SUPERFAMILY SSF142906 103 185 7.85E-10 T 13-10-2018 IPR038056 YjbR-like superfamily Trebr_0202 de99cb532b27128c2e9baf2de6a1dbf4 186 Gene3D G3DSA:3.90.1150.30 103 165 1.0E-13 T 13-10-2018 IPR038056 YjbR-like superfamily Trebr_1168 9df0a11efab4d473d62267b273deb939 301 Pfam PF09986 Uncharacterized protein conserved in bacteria (DUF2225) 21 284 1.2E-43 T 13-10-2018 IPR018708 Protein of unknown function DUF2225 Trebr_0579 8fdcb100507f80cafec1c85e158470bc 504 Pfam PF05670 Domain of unknown function (DUF814) 384 469 1.6E-19 T 13-10-2018 IPR008532 Domain of unknown function DUF814 Trebr_0579 8fdcb100507f80cafec1c85e158470bc 504 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 9 139 6.4E-19 T 13-10-2018 Trebr_0579 8fdcb100507f80cafec1c85e158470bc 504 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 197 361 4.3E-17 T 13-10-2018 Trebr_0579 8fdcb100507f80cafec1c85e158470bc 504 Gene3D G3DSA:2.30.310.10 4 152 4.9E-19 T 13-10-2018 Trebr_1999 498970ed19517e72cec4ecb2f1f42cef 394 Pfam PF02687 FtsX-like permease family 287 382 1.1E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_0090 ff29ae452a9f5bb0b61351a95ee5551e 334 Pfam PF14238 Domain of unknown function (DUF4340) 84 264 1.1E-21 T 13-10-2018 IPR025641 Domain of unknown function DUF4340 Trebr_0280 46493679eaac59419d7ed1a746215e9f 572 Pfam PF14052 Capsule assembly protein Wzi 207 553 1.4E-15 T 13-10-2018 IPR026950 Capsule assembly protein Wzi Trebr_0280 46493679eaac59419d7ed1a746215e9f 572 Gene3D G3DSA:2.40.160.130 138 551 2.0E-22 T 13-10-2018 IPR038636 Capsule assembly protein Wzi superfamily Trebr_0312 900a75e593553a0829c69e746a2d3496 397 Pfam PF01963 TraB family 11 236 1.8E-32 T 13-10-2018 IPR002816 Pheromone shutdown, TraB Trebr_0312 900a75e593553a0829c69e746a2d3496 397 TIGRFAM TIGR00261 traB: TraB family protein 12 394 1.8E-100 T 13-10-2018 IPR005230 Pheromone shutdown, TraB, bacterial/archaeal Trebr_0589 d867e457ccc5fa88b7b919c82933789d 304 Gene3D G3DSA:3.20.20.140 4 302 6.7E-45 T 13-10-2018 Trebr_0589 d867e457ccc5fa88b7b919c82933789d 304 SUPERFAMILY SSF51556 9 301 2.11E-40 T 13-10-2018 IPR032466 Metal-dependent hydrolase Trebr_0589 d867e457ccc5fa88b7b919c82933789d 304 Pfam PF00962 Adenosine/AMP deaminase 149 294 1.6E-26 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 Trebr_1820 526075847ff29e476194bf46e18a8bd8 299 Pfam PF04018 Domain of unknown function (DUF368) 13 271 9.5E-46 T 13-10-2018 IPR007163 Protein of unknown function DUF368 Trebr_1604 d50d9c34714e5bbd1f8cfd94c0214d17 65 Pfam PF06289 Flagellar protein (FlbD) 1 58 8.0E-24 T 13-10-2018 IPR009384 Swarming motility protein SwrD-like Trebr_2265 8259974a1f82dfcbebd251d1e18450fd 353 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 295 4.8E-43 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_0041 30c1c6986ea4aac5bb27757f8b494a1b 224 Pfam PF07947 YhhN family 37 220 1.8E-32 T 13-10-2018 IPR012506 YhhN-like GO:0016021 Trebr_1340 6cfc12904f80cc54782d2ff0d4373ff7 331 Pfam PF13280 WYL domain 153 326 5.0E-36 T 13-10-2018 IPR026881 WYL domain Trebr_1606 e7aef42e5363c9131dd79190671be544 146 Pfam PF03963 Flagellar hook capping protein - N-terminal region 30 85 1.4E-22 T 13-10-2018 IPR005648 Flagellar hook capping protein Trebr_0929 4492896f8fbd1214c8040026ebcc24f7 342 Pfam PF13807 G-rich domain on putative tyrosine kinase 245 317 2.5E-7 T 13-10-2018 IPR032807 Tyrosine kinase, G-rich domain Trebr_1455 2528d38b59ae90058ffe01104fe1c1bc 305 Pfam PF09992 Phosphodiester glycosidase 123 294 3.7E-16 T 13-10-2018 IPR018711 Phosphodiester glycosidase Trebr_1950 5af9f1a5234fb2d784e3b820c7e339d2 137 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 136 3.9E-21 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Trebr_2198 f3c6715dd4f253ef08710b40f38a1cfd 295 Pfam PF14014 Protein of unknown function (DUF4230) 104 242 1.4E-15 T 13-10-2018 IPR025324 Protein of unknown function DUF4230 Trebr_1367 8514d61d9caf4c2a70919efd1f8b8778 148 Pfam PF03692 Putative zinc- or iron-chelating domain 15 117 2.0E-7 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Trebr_0145 05bf4aca2762bb270ab96ab635e40587 155 Pfam PF12675 Protein of unknown function (DUF3795) 11 78 1.9E-9 T 13-10-2018 IPR024227 Protein of unknown function DUF3795 Trebr_0601 6f64a3195f3a8d6b839d823e42267f62 234 Pfam PF03591 AzlC protein 15 154 3.8E-40 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease Trebr_0545 f013950677be8f8e0e6e2a635ecd2748 279 Pfam PF02361 Cobalt transport protein 15 235 2.7E-28 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component Trebr_1232 d38d8a02d89debce6cf11d38a4aa005a 334 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 313 1.1E-46 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Trebr_1546 8455c5aeb5dd3d1307b8760f3d123cc0 124 Pfam PF03646 FlaG protein 26 122 3.6E-19 T 13-10-2018 IPR005186 FlaG protein Trebr_1546 8455c5aeb5dd3d1307b8760f3d123cc0 124 Gene3D G3DSA:3.30.160.170 19 120 2.8E-14 T 13-10-2018 IPR035924 FlaG-like superfamily Trebr_1546 8455c5aeb5dd3d1307b8760f3d123cc0 124 SUPERFAMILY SSF160214 52 123 8.76E-19 T 13-10-2018 IPR035924 FlaG-like superfamily Trebr_1731 42d1d9ee9bfb3cb801f43a358b887617 310 SUPERFAMILY SSF48452 89 192 2.61E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Trebr_2175 34d1fb7c58dd5ef8d5cfa5dbc23ebabb 214 Pfam PF01930 Domain of unknown function DUF83 10 186 2.4E-35 T 13-10-2018 IPR022765 Dna2/Cas4, domain of unknown function DUF83 Trebr_2175 34d1fb7c58dd5ef8d5cfa5dbc23ebabb 214 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 10 185 9.5E-35 T 13-10-2018 IPR013343 CRISPR-associated protein Cas4 Trebr_2175 34d1fb7c58dd5ef8d5cfa5dbc23ebabb 214 Gene3D G3DSA:3.90.320.10 6 185 2.2E-12 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal Trebr_1522 5272961d52aa7292cfb1bbefef587ff1 517 Pfam PF01973 Protein of unknown function DUF115 177 319 1.6E-17 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like Trebr_1175 3052ca1ab07aa14f64376551a0426057 357 Pfam PF01594 AI-2E family transporter 13 334 1.8E-44 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like Trebr_1269 afd7c26c17ce2611c2d79deb136a3f68 141 Pfam PF01478 Type IV leader peptidase family 5 104 2.5E-14 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Trebr_1297 88d908d90b0b58a1188d5220f6aa5d26 399 SUPERFAMILY SSF48371 105 367 3.6E-6 T 13-10-2018 IPR016024 Armadillo-type fold Trebr_0715 2786446de44ea44f26be5d90ea0bfc85 200 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 42 167 6.2E-27 T 13-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Trebr_1813 30b1c641ec828833f34bb70e8a134237 563 Pfam PF01554 MatE 74 228 7.9E-6 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Trebr_0138 d34abdc7cba9bb0625e65e480d8ede18 331 Pfam PF03773 Predicted permease 88 327 5.5E-29 T 13-10-2018 IPR005524 Predicted permease DUF318 Trebr_2047 eb494de61016d937fc3898c031f2f3d3 217 Pfam PF08006 Protein of unknown function (DUF1700) 1 180 9.1E-12 T 13-10-2018 IPR012963 Protein of unknown function DUF1700 Trebr_1385 f3711153d3704c4144b01dd619676662 159 Pfam PF02681 Divergent PAP2 family 13 152 6.0E-43 T 13-10-2018 IPR003832 Protein of unknown function DUF212 Trebr_1219 d8e1d0a7bccb12cae2eb957775c56dd0 192 Pfam PF12672 Protein of unknown function (DUF3793) 7 181 1.4E-45 T 13-10-2018 IPR024523 Protein of unknown function DUF3793 Trebr_2212 5f6d6466486a4ab43f5b025d1d248211 337 Pfam PF03773 Predicted permease 44 330 2.5E-63 T 13-10-2018 IPR005524 Predicted permease DUF318 Trebr_1699 5d6a770a35d07996501c45475d66b2a0 213 SUPERFAMILY SSF160527 156 207 3.4E-5 T 13-10-2018 Trebr_0779 22e2648bf60a79209ce2f30dc25ea3e8 115 SUPERFAMILY SSF75138 1 107 4.05E-15 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Trebr_0995 f5e7d77add47c187183e10a65b2e0562 444 Pfam PF02687 FtsX-like permease family 308 432 7.2E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Trebr_0497 316677764ccd587cd37359abd0700bc3 169 SUPERFAMILY SSF140566 17 145 5.36E-6 T 13-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 Trebr_0887 91c15c8cf37e45203ef51dc810e5f830 397 Pfam PF01757 Acyltransferase family 46 375 2.0E-24 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Trebr_1935 e244678bbfed11fc0a9388c2374f0c4c 627 Pfam PF01973 Protein of unknown function DUF115 215 383 1.0E-31 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like Trebr_0080 5af3ae386f17f9f763e6eaa0191b49f7 282 SUPERFAMILY SSF53335 46 265 6.13E-9 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase