locus-tag class description TDE_0001 PF00308 Bacterial dnaA protein TDE_0001 PF11638 DnaA N-terminal domain TDE_0001 PF08299 Bacterial dnaA protein helix-turn-helix TDE_0002 PF00204 DNA gyrase B TDE_0002 PF00986 DNA gyrase B subunit, carboxyl terminus TDE_0002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE_0002 PF01751 Toprim domain TDE_0006 PF12419 SNF2 Helicase protein TDE_0006 PF00271 Helicase conserved C-terminal domain TDE_0006 PF00176 SNF2 family N-terminal domain TDE_0008 PF00403 Heavy-metal-associated domain TDE_0010 PF00293 NUDIX domain TDE_0011 PF00578 AhpC/TSA family TDE_0011 PF10417 C-terminal domain of 1-Cys peroxiredoxin TDE_0012 PF02554 Carbon starvation protein CstA TDE_0013 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TDE_0013 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TDE_0016 PF16193 AAA C-terminal domain TDE_0016 PF00004 ATPase family associated with various cellular activities (AAA) TDE_0016 PF12002 MgsA AAA+ ATPase C terminal TDE_0017 PF05343 M42 glutamyl aminopeptidase TDE_0019 PF01268 Formate--tetrahydrofolate ligase TDE_0020 PF03129 Anticodon binding domain TDE_0020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE_0024 PF01915 Glycosyl hydrolase family 3 C-terminal domain TDE_0024 PF00933 Glycosyl hydrolase family 3 N terminal domain TDE_0028 PF00005 ABC transporter TDE_0029 PF00005 ABC transporter TDE_0029 PF00664 ABC transporter transmembrane region TDE_0030 PF01790 Prolipoprotein diacylglyceryl transferase TDE_0033 PF00072 Response regulator receiver domain TDE_0033 PF04397 LytTr DNA-binding domain TDE_0038 PF00109 Beta-ketoacyl synthase, N-terminal domain TDE_0038 PF02801 Beta-ketoacyl synthase, C-terminal domain TDE_0040 PF13193 AMP-binding enzyme C-terminal domain TDE_0040 PF00501 AMP-binding enzyme TDE_0041 PF02237 Biotin protein ligase C terminal domain TDE_0041 PF08279 HTH domain TDE_0041 PF03099 Biotin/lipoate A/B protein ligase family TDE_0042 PF01515 Phosphate acetyl/butaryl transferase TDE_0043 PF13176 Tetratricopeptide repeat TDE_0043 PF13174 Tetratricopeptide repeat TDE_0044 PF12848 ABC transporter TDE_0044 PF00005 ABC transporter TDE_0045 PF00005 ABC transporter TDE_0047 PF01979 Amidohydrolase family TDE_0052 PF01313 Bacterial export proteins, family 3 TDE_0053 PF01311 Bacterial export proteins, family 1 TDE_0054 PF01312 FlhB HrpN YscU SpaS Family TDE_0055 PF00771 FHIPEP family TDE_0056 PF01192 RNA polymerase Rpb6 TDE_0064 PF00365 Phosphofructokinase TDE_0067 PF13545 Crp-like helix-turn-helix domain TDE_0067 PF00027 Cyclic nucleotide-binding domain TDE_0068 PF01546 Peptidase family M20/M25/M40 TDE_0068 PF07687 Peptidase dimerisation domain TDE_0070 PF04545 Sigma-70, region 4 TDE_0070 PF04539 Sigma-70 region 3 TDE_0070 PF04542 Sigma-70 region 2 TDE_0070 PF00140 Sigma-70 factor, region 1.2 TDE_0070 PF03979 Sigma-70 factor, region 1.1 TDE_0071 PF01136 Peptidase family U32 TDE_0071 PF12392 Collagenase TDE_0072 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0072 PF00672 HAMP domain TDE_0072 PF02743 Cache domain TDE_0073 PF01687 Riboflavin kinase TDE_0074 PF13520 Amino acid permease TDE_0075 PF00107 Zinc-binding dehydrogenase TDE_0075 PF08240 Alcohol dehydrogenase GroES-like domain TDE_0076 PF01791 DeoC/LacD family aldolase TDE_0077 PF09338 Glycine/sarcosine/betaine reductase component B subunits TDE_0080 PF00171 Aldehyde dehydrogenase family TDE_0083 PF01926 50S ribosome-binding GTPase TDE_0083 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TDE_0084 PF02896 PEP-utilising enzyme, TIM barrel domain TDE_0084 PF00391 PEP-utilising enzyme, mobile domain TDE_0084 PF05524 PEP-utilising enzyme, N-terminal TDE_0085 PF12705 PD-(D/E)XK nuclease superfamily TDE_0085 PF00580 UvrD/REP helicase N-terminal domain TDE_0085 PF13361 UvrD-like helicase C-terminal domain TDE_0086 PF12705 PD-(D/E)XK nuclease superfamily TDE_0087 PF02254 TrkA-N domain TDE_0087 PF02080 TrkA-C domain TDE_0088 PF02386 Cation transport protein TDE_0089 PF01841 Transglutaminase-like superfamily TDE_0092 PF01406 tRNA synthetases class I (C) catalytic domain TDE_0092 PF09190 DALR domain TDE_0093 PF01565 FAD binding domain TDE_0093 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TDE_0096 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_0096 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TDE_0099 PF01555 DNA methylase TDE_0099 PF18273 Type III R-M EcoP15I C-terminal domain TDE_0100 PF07676 WD40-like Beta Propeller Repeat TDE_0100 PF00326 Prolyl oligopeptidase family TDE_0101 PF00128 Alpha amylase, catalytic domain TDE_0101 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TDE_0103 PF00266 Aminotransferase class-V TDE_0104 PF01761 3-dehydroquinate synthase TDE_0105 PF01048 Phosphorylase superfamily TDE_0109 PF01409 tRNA synthetases class II core domain (F) TDE_0110 PF04225 Opacity-associated protein A LysM-like domain TDE_0110 PF01551 Peptidase family M23 TDE_0112 PF03885 Protein of unknown function (DUF327) TDE_0113 PF04468 PSP1 C-terminal conserved region TDE_0116 PF03824 High-affinity nickel-transport protein TDE_0122 PF01207 Dihydrouridine synthase (Dus) TDE_0125 PF00990 Diguanylate cyclase, GGDEF domain TDE_0125 PF00072 Response regulator receiver domain TDE_0128 PF00563 EAL domain TDE_0128 PF00990 Diguanylate cyclase, GGDEF domain TDE_0128 PF08448 PAS fold TDE_0129 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TDE_0129 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain TDE_0129 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain TDE_0129 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TDE_0130 PF00375 Sodium:dicarboxylate symporter family TDE_0134 PF01266 FAD dependent oxidoreductase TDE_0135 PF04324 BFD-like [2Fe-2S] binding domain TDE_0135 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_0137 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TDE_0137 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TDE_0138 PF01565 FAD binding domain TDE_0138 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TDE_0140 PF13936 Helix-turn-helix domain TDE_0143 PF01547 Bacterial extracellular solute-binding protein TDE_0144 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0145 PF08402 TOBE domain TDE_0145 PF00005 ABC transporter TDE_0146 PF07687 Peptidase dimerisation domain TDE_0146 PF01546 Peptidase family M20/M25/M40 TDE_0148 PF07730 Histidine kinase TDE_0149 PF00072 Response regulator receiver domain TDE_0149 PF00196 Bacterial regulatory proteins, luxR family TDE_0150 PF07885 Ion channel TDE_0150 PF00027 Cyclic nucleotide-binding domain TDE_0153 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TDE_0153 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_0154 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE_0155 PF00672 HAMP domain TDE_0155 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE_0156 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE_0157 PF01081 KDPG and KHG aldolase TDE_0163 PF00258 Flavodoxin TDE_0167 PF00005 ABC transporter TDE_0168 PF00392 Bacterial regulatory proteins, gntR family TDE_0168 PF07702 UTRA domain TDE_0169 PF17202 Single cache domain 3 TDE_0169 PF00672 HAMP domain TDE_0169 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0170 PF00149 Calcineurin-like phosphoesterase TDE_0171 PF13476 AAA domain TDE_0172 PF02673 Bacitracin resistance protein BacA TDE_0173 PF17854 FtsK alpha domain TDE_0173 PF09397 Ftsk gamma domain TDE_0173 PF01580 FtsK/SpoIIIE family TDE_0174 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TDE_0174 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain TDE_0174 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TDE_0175 PF01470 Pyroglutamyl peptidase TDE_0178 PF00672 HAMP domain TDE_0178 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0178 PF02743 Cache domain TDE_0181 PF00672 HAMP domain TDE_0181 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0181 PF02743 Cache domain TDE_0182 PF00005 ABC transporter TDE_0183 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0184 PF00005 ABC transporter TDE_0185 PF00005 ABC transporter TDE_0188 PF00962 Adenosine/AMP deaminase TDE_0189 PF01925 Sulfite exporter TauE/SafE TDE_0190 PF00892 EamA-like transporter family TDE_0191 PF13673 Acetyltransferase (GNAT) domain TDE_0200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE_0204 PF00749 tRNA synthetases class I (E and Q), catalytic domain TDE_0207 PF02447 GntP family permease TDE_0208 PF02595 Glycerate kinase family TDE_0209 PF03600 Citrate transporter TDE_0210 PF12557 Cob(I)alamin adenosyltransferase N terminal TDE_0210 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TDE_0211 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0214 PF07238 PilZ domain TDE_0217 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TDE_0217 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TDE_0230 PF02463 RecF/RecN/SMC N terminal domain TDE_0231 PF00712 DNA polymerase III beta subunit, N-terminal domain TDE_0231 PF02767 DNA polymerase III beta subunit, central domain TDE_0231 PF02768 DNA polymerase III beta subunit, C-terminal domain TDE_0232 PF01661 Macro domain TDE_0233 PF13784 Fic/DOC family N-terminal TDE_0233 PF02661 Fic/DOC family TDE_0234 PF00005 ABC transporter TDE_0237 PF12072 Domain of unknown function (DUF3552) TDE_0237 PF01966 HD domain TDE_0237 PF00013 KH domain TDE_0239 PF02504 Fatty acid synthesis protein TDE_0240 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TDE_0243 PF00005 ABC transporter TDE_0244 PF00005 ABC transporter TDE_0244 PF00664 ABC transporter transmembrane region TDE_0245 PF00005 ABC transporter TDE_0245 PF00664 ABC transporter transmembrane region TDE_0246 PF17932 Tetracyclin repressor-like, C-terminal domain TDE_0246 PF00440 Bacterial regulatory proteins, tetR family TDE_0248 PF04343 Protein of unknown function, DUF488 TDE_0249 PF01613 Flavin reductase like domain TDE_0250 PF00209 Sodium:neurotransmitter symporter family TDE_0251 PF01212 Beta-eliminating lyase TDE_0255 PF00005 ABC transporter TDE_0258 PF01209 ubiE/COQ5 methyltransferase family TDE_0259 PF01047 MarR family TDE_0267 PF01725 Ham1 family TDE_0273 PF00005 ABC transporter TDE_0273 PF00664 ABC transporter transmembrane region TDE_0274 PF00664 ABC transporter transmembrane region TDE_0274 PF00005 ABC transporter TDE_0274 PF04954 Siderophore-interacting protein TDE_0274 PF08021 Siderophore-interacting FAD-binding domain TDE_0279 PF12146 Serine aminopeptidase, S33 TDE_0282 PF00005 ABC transporter TDE_0285 PF14492 Elongation Factor G, domain II TDE_0285 PF03144 Elongation factor Tu domain 2 TDE_0285 PF00009 Elongation factor Tu GTP binding domain TDE_0285 PF03764 Elongation factor G, domain IV TDE_0285 PF00679 Elongation factor G C-terminus TDE_0286 PF00664 ABC transporter transmembrane region TDE_0286 PF00005 ABC transporter TDE_0287 PF00005 ABC transporter TDE_0287 PF03412 Peptidase C39 family TDE_0287 PF00664 ABC transporter transmembrane region TDE_0292 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TDE_0294 PF02080 TrkA-C domain TDE_0294 PF02254 TrkA-N domain TDE_0295 PF03989 DNA gyrase C-terminal domain, beta-propeller TDE_0295 PF00521 DNA gyrase/topoisomerase IV, subunit A TDE_0296 PF02971 Formiminotransferase domain TDE_0296 PF07837 Formiminotransferase domain, N-terminal subdomain TDE_0299 PF00293 NUDIX domain TDE_0300 PF00883 Cytosol aminopeptidase family, catalytic domain TDE_0300 PF02789 Cytosol aminopeptidase family, N-terminal domain TDE_0305 PF06071 Protein of unknown function (DUF933) TDE_0305 PF01926 50S ribosome-binding GTPase TDE_0306 PF01343 Peptidase family S49 TDE_0311 PF02511 Thymidylate synthase complementing protein TDE_0312 PF02386 Cation transport protein TDE_0313 PF02254 TrkA-N domain TDE_0313 PF02080 TrkA-C domain TDE_0315 PF00005 ABC transporter TDE_0316 PF00664 ABC transporter transmembrane region TDE_0316 PF00005 ABC transporter TDE_0319 PF07726 ATPase family associated with various cellular activities (AAA) TDE_0319 PF17863 AAA lid domain TDE_0320 PF00571 CBS domain TDE_0320 PF03471 Transporter associated domain TDE_0320 PF01595 Cyclin M transmembrane N-terminal domain TDE_0321 PF01595 Cyclin M transmembrane N-terminal domain TDE_0321 PF00571 CBS domain TDE_0321 PF03471 Transporter associated domain TDE_0326 PF16124 RecQ zinc-binding TDE_0326 PF00570 HRDC domain TDE_0326 PF00271 Helicase conserved C-terminal domain TDE_0326 PF00270 DEAD/DEAH box helicase TDE_0326 PF09382 RQC domain TDE_0327 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 TDE_0327 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 TDE_0327 PF13395 HNH endonuclease TDE_0327 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 TDE_0328 PF01867 CRISPR associated protein Cas1 TDE_0329 PF09827 CRISPR associated protein Cas2 TDE_0332 PF00440 Bacterial regulatory proteins, tetR family TDE_0335 PF00268 Ribonucleotide reductase, small chain TDE_0336 PF01594 AI-2E family transporter TDE_0337 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TDE_0339 PF00440 Bacterial regulatory proteins, tetR family TDE_0340 PF00274 Fructose-bisphosphate aldolase class-I TDE_0341 PF00317 Ribonucleotide reductase, all-alpha domain TDE_0341 PF03477 ATP cone domain TDE_0341 PF02867 Ribonucleotide reductase, barrel domain TDE_0342 PF03023 Lipid II flippase MurJ TDE_0345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0345 PF02743 Cache domain TDE_0345 PF00672 HAMP domain TDE_0347 PF00672 HAMP domain TDE_0347 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0347 PF02743 Cache domain TDE_0348 PF00440 Bacterial regulatory proteins, tetR family TDE_0348 PF08359 YsiA-like protein, C-terminal region TDE_0349 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TDE_0349 PF00391 PEP-utilising enzyme, mobile domain TDE_0350 PF01554 MatE TDE_0351 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TDE_0351 PF00056 lactate/malate dehydrogenase, NAD binding domain TDE_0352 PF02502 Ribose/Galactose Isomerase TDE_0354 PF02525 Flavodoxin-like fold TDE_0359 PF00664 ABC transporter transmembrane region TDE_0359 PF00005 ABC transporter TDE_0360 PF00005 ABC transporter TDE_0360 PF00664 ABC transporter transmembrane region TDE_0361 PF03616 Sodium/glutamate symporter TDE_0364 PF00005 ABC transporter TDE_0364 PF00664 ABC transporter transmembrane region TDE_0366 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TDE_0366 PF18766 SWI2/SNF2 ATPase TDE_0366 PF11867 Domain of unknown function (DUF3387) TDE_0368 PF01420 Type I restriction modification DNA specificity domain TDE_0369 PF02384 N-6 DNA Methylase TDE_0369 PF12161 HsdM N-terminal domain TDE_0370 PF02875 Mur ligase family, glutamate ligase domain TDE_0370 PF08245 Mur ligase middle domain TDE_0372 PF00664 ABC transporter transmembrane region TDE_0372 PF00005 ABC transporter TDE_0372 PF03412 Peptidase C39 family TDE_0373 PF00664 ABC transporter transmembrane region TDE_0373 PF00005 ABC transporter TDE_0374 PF13439 Glycosyltransferase Family 4 TDE_0374 PF00534 Glycosyl transferases group 1 TDE_0376 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0385 PF00005 ABC transporter TDE_0387 PF01869 BadF/BadG/BcrA/BcrD ATPase family TDE_0389 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component TDE_0392 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component TDE_0394 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0395 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE_0395 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0396 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_0396 PF00005 ABC transporter TDE_0397 PF00005 ABC transporter TDE_0397 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_0398 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE_0400 PF03466 LysR substrate binding domain TDE_0400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TDE_0401 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE_0401 PF00672 HAMP domain TDE_0401 PF02743 Cache domain TDE_0406 PF08011 PD-(D/E)XK nuclease superfamily TDE_0406 PF09820 Predicted AAA-ATPase TDE_0407 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TDE_0407 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_0408 PF00970 Oxidoreductase FAD-binding domain TDE_0408 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TDE_0408 PF00175 Oxidoreductase NAD-binding domain TDE_0410 PF01435 Peptidase family M48 TDE_0411 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE_0411 PF00672 HAMP domain TDE_0411 PF02743 Cache domain TDE_0425 PF03412 Peptidase C39 family TDE_0425 PF00664 ABC transporter transmembrane region TDE_0425 PF00005 ABC transporter TDE_0431 PF01476 LysM domain TDE_0431 PF04972 BON domain TDE_0434 PF02915 Rubrerythrin TDE_0435 PF16124 RecQ zinc-binding TDE_0435 PF09382 RQC domain TDE_0435 PF00570 HRDC domain TDE_0435 PF00271 Helicase conserved C-terminal domain TDE_0435 PF00270 DEAD/DEAH box helicase TDE_0436 PF02565 Recombination protein O C terminal TDE_0436 PF11967 Recombination protein O N terminal TDE_0438 PF01702 Queuine tRNA-ribosyltransferase TDE_0444 PF07722 Peptidase C26 TDE_0445 PF13520 Amino acid permease TDE_0448 PF01791 DeoC/LacD family aldolase TDE_0449 PF00210 Ferritin-like domain TDE_0450 PF07687 Peptidase dimerisation domain TDE_0450 PF01546 Peptidase family M20/M25/M40 TDE_0454 PF01171 PP-loop family TDE_0455 PF10509 Galactokinase galactose-binding signature TDE_0455 PF08544 GHMP kinases C terminal TDE_0455 PF00288 GHMP kinases N terminal domain TDE_0456 PF01680 SOR/SNZ family TDE_0459 PF12671 Putative amidase domain TDE_0462 PF00753 Metallo-beta-lactamase superfamily TDE_0462 PF16123 Hydroxyacylglutathione hydrolase C-terminus TDE_0463 PF01048 Phosphorylase superfamily TDE_0470 PF17862 AAA+ lid domain TDE_0470 PF01434 Peptidase family M41 TDE_0470 PF00004 ATPase family associated with various cellular activities (AAA) TDE_0475 PF00005 ABC transporter TDE_0475 PF02687 FtsX-like permease family TDE_0475 PF12704 MacB-like periplasmic core domain TDE_0476 PF02492 CobW/HypB/UreG, nucleotide-binding domain TDE_0479 PF03063 Prismane/CO dehydrogenase family TDE_0484 PF02743 Cache domain TDE_0484 PF00672 HAMP domain TDE_0484 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0487 PF00005 ABC transporter TDE_0488 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TDE_0492 PF00486 Transcriptional regulatory protein, C terminal TDE_0492 PF00072 Response regulator receiver domain TDE_0494 PF07804 HipA-like C-terminal domain TDE_0496 PF01381 Helix-turn-helix TDE_0505 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ TDE_0535 PF00005 ABC transporter TDE_0544 PF03781 Sulfatase-modifying factor enzyme 1 TDE_0571 PF03781 Sulfatase-modifying factor enzyme 1 TDE_0572 PF03781 Sulfatase-modifying factor enzyme 1 TDE_0575 PF02934 GatB/GatE catalytic domain TDE_0575 PF02637 GatB domain TDE_0576 PF01425 Amidase TDE_0582 PF07726 ATPase family associated with various cellular activities (AAA) TDE_0582 PF17863 AAA lid domain TDE_0583 PF09323 Domain of unknown function (DUF1980) TDE_0584 PF03773 Predicted permease TDE_0588 PF00221 Aromatic amino acid lyase TDE_0589 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TDE_0590 PF01039 Carboxyl transferase domain TDE_0591 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TDE_0591 PF00289 Biotin carboxylase, N-terminal domain TDE_0591 PF02785 Biotin carboxylase C-terminal domain TDE_0592 PF00364 Biotin-requiring enzyme TDE_0597 PF07055 Enoyl reductase FAD binding domain TDE_0597 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TDE_0597 PF12241 Trans-2-enoyl-CoA reductase catalytic region TDE_0601 PF00698 Acyl transferase domain TDE_0602 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TDE_0602 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TDE_0606 PF17762 HTH domain found in ParB protein TDE_0606 PF02195 ParB-like nuclease domain TDE_0607 PF13614 AAA domain TDE_0610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TDE_0610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TDE_0614 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE_0615 PF11760 Cobalamin synthesis G N-terminal TDE_0615 PF11761 Cobalamin biosynthesis central region TDE_0615 PF01890 Cobalamin synthesis G C-terminus TDE_0619 PF02743 Cache domain TDE_0619 PF00672 HAMP domain TDE_0619 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0621 PF01554 MatE TDE_0623 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE_0624 PF02571 Precorrin-6x reductase CbiJ/CobK TDE_0625 PF00005 ABC transporter TDE_0627 PF01025 GrpE TDE_0628 PF00012 Hsp70 protein TDE_0629 PF00226 DnaJ domain TDE_0629 PF01556 DnaJ C terminal domain TDE_0629 PF00684 DnaJ central domain TDE_0634 PF16916 Dimerisation domain of Zinc Transporter TDE_0634 PF01545 Cation efflux family TDE_0636 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_0636 PF00005 ABC transporter TDE_0637 PF00005 ABC transporter TDE_0637 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_0638 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0638 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE_0639 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0640 PF02743 Cache domain TDE_0640 PF00672 HAMP domain TDE_0640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0641 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TDE_0643 PF01195 Peptidyl-tRNA hydrolase TDE_0644 PF00005 ABC transporter TDE_0644 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDE_0647 PF03705 CheR methyltransferase, all-alpha domain TDE_0647 PF01739 CheR methyltransferase, SAM binding domain TDE_0648 PF00072 Response regulator receiver domain TDE_0648 PF01339 CheB methylesterase TDE_0654 PF07687 Peptidase dimerisation domain TDE_0654 PF01546 Peptidase family M20/M25/M40 TDE_0655 PF00072 Response regulator receiver domain TDE_0655 PF00486 Transcriptional regulatory protein, C terminal TDE_0656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE_0657 PF00005 ABC transporter TDE_0660 PF13280 WYL domain TDE_0660 PF08279 HTH domain TDE_0662 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system TDE_0664 PF00691 OmpA family TDE_0665 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TDE_0665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDE_0665 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TDE_0665 PF10371 Domain of unknown function TDE_0665 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TDE_0666 PF00005 ABC transporter TDE_0667 PF01458 Uncharacterized protein family (UPF0051) TDE_0670 PF00004 ATPase family associated with various cellular activities (AAA) TDE_0670 PF05362 Lon protease (S16) C-terminal proteolytic domain TDE_0670 PF02190 ATP-dependent protease La (LON) substrate-binding domain TDE_0674 PF01661 Macro domain TDE_0677 PF01206 Sulfurtransferase TusA TDE_0680 PF02355 Protein export membrane protein TDE_0681 PF02355 Protein export membrane protein TDE_0682 PF02699 Preprotein translocase subunit TDE_0685 PF00106 short chain dehydrogenase TDE_0686 PF01259 SAICAR synthetase TDE_0687 PF00731 AIR carboxylase TDE_0689 PF01636 Phosphotransferase enzyme family TDE_0691 PF00664 ABC transporter transmembrane region TDE_0691 PF00005 ABC transporter TDE_0693 PF08543 Phosphomethylpyrimidine kinase TDE_0694 PF00005 ABC transporter TDE_0702 PF00005 ABC transporter TDE_0704 PF01145 SPFH domain / Band 7 family TDE_0705 PF01145 SPFH domain / Band 7 family TDE_0706 PF02086 D12 class N6 adenine-specific DNA methyltransferase TDE_0709 PF01641 SelR domain TDE_0709 PF01625 Peptide methionine sulfoxide reductase TDE_0714 PF02719 Polysaccharide biosynthesis protein TDE_0716 PF02517 CPBP intramembrane metalloprotease TDE_0719 PF03412 Peptidase C39 family TDE_0719 PF00005 ABC transporter TDE_0719 PF00664 ABC transporter transmembrane region TDE_0720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TDE_0725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TDE_0727 PF01799 [2Fe-2S] binding domain TDE_0727 PF00111 2Fe-2S iron-sulfur cluster binding domain TDE_0728 PF00941 FAD binding domain in molybdopterin dehydrogenase TDE_0728 PF03450 CO dehydrogenase flavoprotein C-terminal domain TDE_0732 PF00171 Aldehyde dehydrogenase family TDE_0737 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system TDE_0743 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_0744 PF00085 Thioredoxin TDE_0746 PF00005 ABC transporter TDE_0747 PF01032 FecCD transport family TDE_0749 PF02514 CobN/Magnesium Chelatase TDE_0750 PF01078 Magnesium chelatase, subunit ChlI TDE_0750 PF13519 von Willebrand factor type A domain TDE_0750 PF17863 AAA lid domain TDE_0751 PF17863 AAA lid domain TDE_0751 PF01078 Magnesium chelatase, subunit ChlI TDE_0755 PF03553 Na+/H+ antiporter family TDE_0756 PF00005 ABC transporter TDE_0757 PF01032 FecCD transport family TDE_0765 PF03143 Elongation factor Tu C-terminal domain TDE_0765 PF03144 Elongation factor Tu domain 2 TDE_0765 PF00009 Elongation factor Tu GTP binding domain TDE_0766 PF00338 Ribosomal protein S10p/S20e TDE_0767 PF00297 Ribosomal protein L3 TDE_0768 PF00573 Ribosomal protein L4/L1 family TDE_0769 PF00276 Ribosomal protein L23 TDE_0770 PF00181 Ribosomal Proteins L2, RNA binding domain TDE_0770 PF03947 Ribosomal Proteins L2, C-terminal domain TDE_0771 PF00203 Ribosomal protein S19 TDE_0772 PF00237 Ribosomal protein L22p/L17e TDE_0773 PF00189 Ribosomal protein S3, C-terminal domain TDE_0773 PF07650 KH domain TDE_0774 PF00252 Ribosomal protein L16p/L10e TDE_0775 PF00831 Ribosomal L29 protein TDE_0776 PF00366 Ribosomal protein S17 TDE_0777 PF00238 Ribosomal protein L14p/L23e TDE_0778 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TDE_0778 PF00467 KOW motif TDE_0779 PF00281 Ribosomal protein L5 TDE_0779 PF00673 ribosomal L5P family C-terminus TDE_0780 PF00253 Ribosomal protein S14p/S29e TDE_0781 PF00410 Ribosomal protein S8 TDE_0782 PF00347 Ribosomal protein L6 TDE_0783 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TDE_0784 PF00333 Ribosomal protein S5, N-terminal domain TDE_0784 PF03719 Ribosomal protein S5, C-terminal domain TDE_0785 PF00327 Ribosomal protein L30p/L7e TDE_0786 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TDE_0787 PF00344 SecY translocase TDE_0788 PF00444 Ribosomal protein L36 TDE_0789 PF00416 Ribosomal protein S13/S18 TDE_0790 PF00411 Ribosomal protein S11 TDE_0791 PF01000 RNA polymerase Rpb3/RpoA insert domain TDE_0791 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TDE_0791 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TDE_0792 PF01196 Ribosomal protein L17 TDE_0797 PF00708 Acylphosphatase TDE_0799 PF03009 Glycerophosphoryl diester phosphodiesterase family TDE_0801 PF02082 Transcriptional regulator TDE_0802 PF13460 NAD(P)H-binding TDE_0804 PF01139 tRNA-splicing ligase RtcB TDE_0812 PF00664 ABC transporter transmembrane region TDE_0812 PF00005 ABC transporter TDE_0812 PF03412 Peptidase C39 family TDE_0813 PF00005 ABC transporter TDE_0813 PF00664 ABC transporter transmembrane region TDE_0814 PF01638 HxlR-like helix-turn-helix TDE_0815 PF03606 C4-dicarboxylate anaerobic carrier TDE_0816 PF07687 Peptidase dimerisation domain TDE_0816 PF01546 Peptidase family M20/M25/M40 TDE_0818 PF00005 ABC transporter TDE_0818 PF00664 ABC transporter transmembrane region TDE_0819 PF00664 ABC transporter transmembrane region TDE_0819 PF00005 ABC transporter TDE_0820 PF00440 Bacterial regulatory proteins, tetR family TDE_0820 PF08361 MAATS-type transcriptional repressor, C-terminal region TDE_0823 PF07977 FabA-like domain TDE_0824 PF00188 Cysteine-rich secretory protein family TDE_0825 PF02875 Mur ligase family, glutamate ligase domain TDE_0825 PF01225 Mur ligase family, catalytic domain TDE_0825 PF08245 Mur ligase middle domain TDE_0826 PF07411 Domain of unknown function (DUF1508) TDE_0828 PF01134 Glucose inhibited division protein A TDE_0828 PF13932 GidA associated domain TDE_0829 PF02127 Aminopeptidase I zinc metalloprotease (M18) TDE_0833 PF03781 Sulfatase-modifying factor enzyme 1 TDE_0834 PF02508 Rnf-Nqr subunit, membrane protein TDE_0835 PF02508 Rnf-Nqr subunit, membrane protein TDE_0836 PF04205 FMN-binding domain TDE_0837 PF03116 NQR2, RnfD, RnfE family TDE_0838 PF13375 RnfC Barrel sandwich hybrid domain TDE_0838 PF13237 4Fe-4S dicluster domain TDE_0838 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TDE_0838 PF10531 SLBB domain TDE_0841 PF13519 von Willebrand factor type A domain TDE_0844 PF00391 PEP-utilising enzyme, mobile domain TDE_0844 PF02896 PEP-utilising enzyme, TIM barrel domain TDE_0846 PF16314 Domain of unknown function (DUF4954) TDE_0850 PF00672 HAMP domain TDE_0850 PF02743 Cache domain TDE_0850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_0852 PF00572 Ribosomal protein L13 TDE_0853 PF00380 Ribosomal protein S9/S16 TDE_0854 PF02631 RecX family TDE_0855 PF00072 Response regulator receiver domain TDE_0855 PF00196 Bacterial regulatory proteins, luxR family TDE_0860 PF01479 S4 domain TDE_0860 PF00849 RNA pseudouridylate synthase TDE_0861 PF00579 tRNA synthetases class I (W and Y) TDE_0863 PF02308 MgtC family TDE_0864 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TDE_0864 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TDE_0864 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TDE_0864 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TDE_0868 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_0868 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TDE_0870 PF02872 5'-nucleotidase, C-terminal domain TDE_0870 PF00149 Calcineurin-like phosphoesterase TDE_0872 PF00154 recA bacterial DNA recombination protein TDE_0873 PF02616 Segregation and condensation protein ScpA TDE_0874 PF04079 Segregation and condensation complex subunit ScpB TDE_0875 PF01479 S4 domain TDE_0875 PF00849 RNA pseudouridylate synthase TDE_0880 PF02277 Phosphoribosyltransferase TDE_0881 PF00886 Ribosomal protein S16 TDE_0883 PF01782 RimM N-terminal domain TDE_0884 PF01746 tRNA (Guanine-1)-methyltransferase TDE_0885 PF01245 Ribosomal protein L19 TDE_0891 PF08279 HTH domain TDE_0891 PF13280 WYL domain TDE_0893 PF00005 ABC transporter TDE_0895 PF02311 AraC-like ligand binding domain TDE_0895 PF12833 Helix-turn-helix domain TDE_0896 PF00664 ABC transporter transmembrane region TDE_0896 PF00005 ABC transporter TDE_0897 PF00005 ABC transporter TDE_0897 PF00664 ABC transporter transmembrane region TDE_0900 PF00005 ABC transporter TDE_0903 PF00580 UvrD/REP helicase N-terminal domain TDE_0903 PF13361 UvrD-like helicase C-terminal domain TDE_0906 PF00005 ABC transporter TDE_0908 PF00005 ABC transporter TDE_0908 PF00664 ABC transporter transmembrane region TDE_0909 PF01555 DNA methylase TDE_0916 PF00005 ABC transporter TDE_0916 PF00664 ABC transporter transmembrane region TDE_0921 PF00664 ABC transporter transmembrane region TDE_0921 PF00005 ABC transporter TDE_0922 PF00005 ABC transporter TDE_0922 PF00664 ABC transporter transmembrane region TDE_0923 PF00664 ABC transporter transmembrane region TDE_0923 PF00005 ABC transporter TDE_0924 PF08021 Siderophore-interacting FAD-binding domain TDE_0924 PF00664 ABC transporter transmembrane region TDE_0924 PF00005 ABC transporter TDE_0924 PF04954 Siderophore-interacting protein TDE_0925 PF01546 Peptidase family M20/M25/M40 TDE_0925 PF07687 Peptidase dimerisation domain TDE_0928 PF00005 ABC transporter TDE_0929 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TDE_0929 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TDE_0930 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TDE_0930 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TDE_0931 PF01554 MatE TDE_0932 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE_0933 PF00871 Acetokinase family TDE_0934 PF00166 Chaperonin 10 Kd subunit TDE_0937 PF04542 Sigma-70 region 2 TDE_0937 PF03979 Sigma-70 factor, region 1.1 TDE_0937 PF04539 Sigma-70 region 3 TDE_0937 PF04545 Sigma-70, region 4 TDE_0937 PF00140 Sigma-70 factor, region 1.2 TDE_0938 PF01170 Putative RNA methylase family UPF0020 TDE_0938 PF02926 THUMP domain TDE_0939 PF01963 TraB family TDE_0941 PF00877 NlpC/P60 family TDE_0942 PF00501 AMP-binding enzyme TDE_0942 PF13193 AMP-binding enzyme C-terminal domain TDE_0945 PF03781 Sulfatase-modifying factor enzyme 1 TDE_0947 PF03144 Elongation factor Tu domain 2 TDE_0947 PF00009 Elongation factor Tu GTP binding domain TDE_0947 PF14492 Elongation Factor G, domain II TDE_0947 PF03764 Elongation factor G, domain IV TDE_0947 PF00679 Elongation factor G C-terminus TDE_0949 PF03952 Enolase, N-terminal domain TDE_0949 PF00113 Enolase, C-terminal TIM barrel domain TDE_0951 PF02608 ABC transporter substrate-binding protein PnrA-like TDE_0952 PF00005 ABC transporter TDE_0953 PF02653 Branched-chain amino acid transport system / permease component TDE_0954 PF02653 Branched-chain amino acid transport system / permease component TDE_0955 PF04011 LemA family TDE_0956 PF04536 TPM domain TDE_0957 PF03009 Glycerophosphoryl diester phosphodiesterase family TDE_0958 PF01734 Patatin-like phospholipase TDE_0959 PF07009 NusG domain II TDE_0960 PF03102 NeuB family TDE_0960 PF08666 SAF domain TDE_0961 PF00226 DnaJ domain TDE_0961 PF00684 DnaJ central domain TDE_0961 PF01556 DnaJ C terminal domain TDE_0963 PF00817 impB/mucB/samB family TDE_0963 PF11798 IMS family HHH motif TDE_0963 PF11799 impB/mucB/samB family C-terminal domain TDE_0965 PF13277 YmdB-like protein TDE_0966 PF01026 TatD related DNase TDE_0968 PF01132 Elongation factor P (EF-P) OB domain TDE_0968 PF08207 Elongation factor P (EF-P) KOW-like domain TDE_0968 PF09285 Elongation factor P, C-terminal TDE_0971 PF03485 Arginyl tRNA synthetase N terminal domain TDE_0971 PF05746 DALR anticodon binding domain TDE_0971 PF00750 tRNA synthetases class I (R) TDE_0972 PF00156 Phosphoribosyl transferase domain TDE_0973 PF04002 RadC-like JAB domain TDE_0977 PF03781 Sulfatase-modifying factor enzyme 1 TDE_0979 PF00768 D-alanyl-D-alanine carboxypeptidase TDE_0979 PF07943 Penicillin-binding protein 5, C-terminal domain TDE_0980 PF00152 tRNA synthetases class II (D, K and N) TDE_0980 PF01336 OB-fold nucleic acid binding domain TDE_0982 PF01180 Dihydroorotate dehydrogenase TDE_0984 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE_0984 PF00528 Binding-protein-dependent transport system inner membrane component TDE_0985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE_0986 PF00005 ABC transporter TDE_0986 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_0987 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_0987 PF00005 ABC transporter TDE_0988 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE_0991 PF00830 Ribosomal L28 family TDE_0992 PF01812 5-formyltetrahydrofolate cyclo-ligase family TDE_0996 PF01204 Trehalase TDE_0997 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TDE_0997 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TDE_0999 PF01226 Formate/nitrite transporter TDE_1000 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TDE_1000 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TDE_1001 PF00156 Phosphoribosyl transferase domain TDE_1004 PF00700 Bacterial flagellin C-terminal helical region TDE_1004 PF00669 Bacterial flagellin N-terminal helical region TDE_1006 PF00460 Flagella basal body rod protein TDE_1006 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE_1007 PF00460 Flagella basal body rod protein TDE_1007 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE_1008 PF10135 Rod binding protein TDE_1009 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_1009 PF00672 HAMP domain TDE_1009 PF02743 Cache domain TDE_1010 PF00005 ABC transporter TDE_1010 PF17760 UvrA interaction domain TDE_1010 PF17755 UvrA DNA-binding domain TDE_1012 PF16921 Tex protein YqgF-like domain TDE_1012 PF09371 Tex-like protein N-terminal domain TDE_1012 PF00575 S1 RNA binding domain TDE_1012 PF17674 HHH domain TDE_1013 PF01814 Hemerythrin HHE cation binding domain TDE_1017 PF13742 OB-fold nucleic acid binding domain TDE_1017 PF02601 Exonuclease VII, large subunit TDE_1019 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TDE_1021 PF16811 TRAP transporter T-component TDE_1022 PF13936 Helix-turn-helix domain TDE_1023 PF02310 B12 binding domain TDE_1024 PF13941 MutL protein TDE_1025 PF01783 Ribosomal L32p protein family TDE_1026 PF00550 Phosphopantetheine attachment site TDE_1027 PF14622 Ribonuclease-III-like TDE_1027 PF00035 Double-stranded RNA binding motif TDE_1029 PF00011 Hsp20/alpha crystallin family TDE_1033 PF13735 tRNA nucleotidyltransferase domain 2 putative TDE_1033 PF12627 Probable RNA and SrmB- binding site of polymerase A TDE_1033 PF01743 Poly A polymerase head domain TDE_1034 PF01544 CorA-like Mg2+ transporter protein TDE_1038 PF02719 Polysaccharide biosynthesis protein TDE_1039 PF01687 Riboflavin kinase TDE_1039 PF06574 FAD synthetase TDE_1040 PF00312 Ribosomal protein S15 TDE_1041 PF03725 3' exoribonuclease family, domain 2 TDE_1041 PF01138 3' exoribonuclease family, domain 1 TDE_1041 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TDE_1041 PF00013 KH domain TDE_1041 PF00575 S1 RNA binding domain TDE_1042 PF00692 dUTPase TDE_1045 PF04304 Protein of unknown function (DUF454) TDE_1046 PF11756 Nitrous oxide-stimulated promoter TDE_1047 PF00164 Ribosomal protein S12/S23 TDE_1048 PF00177 Ribosomal protein S7p/S5e TDE_1049 PF03764 Elongation factor G, domain IV TDE_1049 PF14492 Elongation Factor G, domain II TDE_1049 PF00679 Elongation factor G C-terminus TDE_1049 PF03144 Elongation factor Tu domain 2 TDE_1049 PF00009 Elongation factor Tu GTP binding domain TDE_1052 PF00301 Rubredoxin TDE_1054 PF02743 Cache domain TDE_1054 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_1054 PF00672 HAMP domain TDE_1055 PF01554 MatE TDE_1056 PF03781 Sulfatase-modifying factor enzyme 1 TDE_1061 PF00005 ABC transporter TDE_1062 PF00005 ABC transporter TDE_1063 PF01588 Putative tRNA binding domain TDE_1063 PF09334 tRNA synthetases class I (M) TDE_1067 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_1067 PF00005 ABC transporter TDE_1068 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_1068 PF00005 ABC transporter TDE_1069 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE_1069 PF00528 Binding-protein-dependent transport system inner membrane component TDE_1070 PF00528 Binding-protein-dependent transport system inner membrane component TDE_1071 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE_1073 PF00528 Binding-protein-dependent transport system inner membrane component TDE_1074 PF00528 Binding-protein-dependent transport system inner membrane component TDE_1074 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE_1075 PF00005 ABC transporter TDE_1075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_1076 PF00005 ABC transporter TDE_1076 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_1078 PF00753 Metallo-beta-lactamase superfamily TDE_1078 PF01613 Flavin reductase like domain TDE_1079 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TDE_1080 PF00398 Ribosomal RNA adenine dimethylase TDE_1082 PF00849 RNA pseudouridylate synthase TDE_1083 PF00849 RNA pseudouridylate synthase TDE_1083 PF01479 S4 domain TDE_1084 PF08245 Mur ligase middle domain TDE_1084 PF02875 Mur ligase family, glutamate ligase domain TDE_1085 PF01225 Mur ligase family, catalytic domain TDE_1085 PF02875 Mur ligase family, glutamate ligase domain TDE_1085 PF08245 Mur ligase middle domain TDE_1086 PF08340 Domain of unknown function (DUF1732) TDE_1086 PF03755 YicC-like family, N-terminal region TDE_1090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE_1090 PF03129 Anticodon binding domain TDE_1090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TDE_1093 PF16258 Domain of unknown function (DUF4912) TDE_1095 PF00842 Alanine racemase, C-terminal domain TDE_1095 PF01168 Alanine racemase, N-terminal domain TDE_1096 PF02401 LytB protein TDE_1104 PF01509 TruB family pseudouridylate synthase (N terminal domain) TDE_1105 PF02033 Ribosome-binding factor A TDE_1106 PF00009 Elongation factor Tu GTP binding domain TDE_1106 PF11987 Translation-initiation factor 2 TDE_1106 PF04760 Translation initiation factor IF-2, N-terminal region TDE_1107 PF00575 S1 RNA binding domain TDE_1107 PF08529 NusA N-terminal domain TDE_1107 PF13184 NusA-like KH domain TDE_1108 PF17384 RimP C-terminal SH3 domain TDE_1108 PF02576 RimP N-terminal domain TDE_1109 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TDE_1109 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TDE_1112 PF05191 Adenylate kinase, active site lid TDE_1114 PF16925 Tetracyclin repressor-like, C-terminal domain TDE_1114 PF00440 Bacterial regulatory proteins, tetR family TDE_1118 PF01212 Beta-eliminating lyase TDE_1122 PF01740 STAS domain TDE_1130 PF02390 Putative methyltransferase TDE_1132 PF01264 Chorismate synthase TDE_1162 PF17762 HTH domain found in ParB protein TDE_1162 PF02195 ParB-like nuclease domain TDE_1173 PF00589 Phage integrase family TDE_1173 PF02899 Phage integrase, N-terminal SAM-like domain TDE_1175 PF00118 TCP-1/cpn60 chaperonin family TDE_1176 PF06969 HemN C-terminal domain TDE_1176 PF04055 Radical SAM superfamily TDE_1178 PF00005 ABC transporter TDE_1179 PF01032 FecCD transport family TDE_1181 PF00891 O-methyltransferase domain TDE_1183 PF00005 ABC transporter TDE_1188 PF02233 NAD(P) transhydrogenase beta subunit TDE_1195 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain TDE_1195 PF00326 Prolyl oligopeptidase family TDE_1197 PF02381 MraZ protein, putative antitoxin-like TDE_1198 PF01795 MraW methylase family TDE_1200 PF01225 Mur ligase family, catalytic domain TDE_1200 PF02875 Mur ligase family, glutamate ligase domain TDE_1200 PF08245 Mur ligase middle domain TDE_1201 PF01098 Cell cycle protein TDE_1203 PF02491 SHS2 domain inserted in FTSA TDE_1204 PF00091 Tubulin/FtsZ family, GTPase domain TDE_1204 PF12327 FtsZ family, C-terminal domain TDE_1205 PF00589 Phage integrase family TDE_1205 PF02899 Phage integrase, N-terminal SAM-like domain TDE_1207 PF17782 DprA winged helix domain TDE_1207 PF02481 DNA recombination-mediator protein A TDE_1208 PF01396 Topoisomerase DNA binding C4 zinc finger TDE_1208 PF01751 Toprim domain TDE_1208 PF01131 DNA topoisomerase TDE_1209 PF02899 Phage integrase, N-terminal SAM-like domain TDE_1209 PF00589 Phage integrase family TDE_1210 PF00227 Proteasome subunit TDE_1211 PF07724 AAA domain (Cdc48 subfamily) TDE_1211 PF00004 ATPase family associated with various cellular activities (AAA) TDE_1212 PF00460 Flagella basal body rod protein TDE_1213 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE_1213 PF00460 Flagella basal body rod protein TDE_1214 PF02049 Flagellar hook-basal body complex protein FliE TDE_1215 PF01514 Secretory protein of YscJ/FliF family TDE_1215 PF08345 Flagellar M-ring protein C-terminal TDE_1216 PF14841 FliG middle domain TDE_1216 PF14842 FliG N-terminal domain TDE_1216 PF01706 FliG C-terminal domain TDE_1217 PF02108 Flagellar assembly protein FliH TDE_1218 PF18269 T3SS EscN ATPase C-terminal domain TDE_1218 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDE_1218 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDE_1221 PF00933 Glycosyl hydrolase family 3 N terminal domain TDE_1223 PF00950 ABC 3 transport family TDE_1224 PF00950 ABC 3 transport family TDE_1225 PF00005 ABC transporter TDE_1226 PF01297 Zinc-uptake complex component A periplasmic TDE_1227 PF10282 Lactonase, 7-bladed beta-propeller TDE_1229 PF00753 Metallo-beta-lactamase superfamily TDE_1229 PF16123 Hydroxyacylglutathione hydrolase C-terminus TDE_1232 PF03781 Sulfatase-modifying factor enzyme 1 TDE_1236 PF00121 Triosephosphate isomerase TDE_1240 PF02562 PhoH-like protein TDE_1241 PF07698 7TM receptor with intracellular HD hydrolase TDE_1241 PF07697 7TM-HD extracellular TDE_1241 PF01966 HD domain TDE_1242 PF02130 Uncharacterized protein family UPF0054 TDE_1243 PF03471 Transporter associated domain TDE_1243 PF00571 CBS domain TDE_1248 PF01882 Protein of unknown function DUF58 TDE_1250 PF00092 von Willebrand factor type A domain TDE_1254 PF01713 Smr domain TDE_1254 PF00488 MutS domain V TDE_1259 PF01235 Sodium:alanine symporter family TDE_1260 PF12804 MobA-like NTP transferase domain TDE_1261 PF02028 BCCT, betaine/carnitine/choline family transporter TDE_1265 PF04551 GcpE protein TDE_1266 PF00586 AIR synthase related protein, N-terminal domain TDE_1266 PF02769 AIR synthase related protein, C-terminal domain TDE_1267 PF02844 Phosphoribosylglycinamide synthetase, N domain TDE_1267 PF02843 Phosphoribosylglycinamide synthetase, C domain TDE_1267 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TDE_1268 PF06044 Dam-replacing family TDE_1268 PF17726 Dam-replacing HTH domain TDE_1271 PF00005 ABC transporter TDE_1271 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_1272 PF00005 ABC transporter TDE_1272 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_1274 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE_1274 PF00528 Binding-protein-dependent transport system inner membrane component TDE_1275 PF00528 Binding-protein-dependent transport system inner membrane component TDE_1277 PF02906 Iron only hydrogenase large subunit, C-terminal domain TDE_1277 PF02256 Iron hydrogenase small subunit TDE_1277 PF12838 4Fe-4S dicluster domain TDE_1278 PF04260 Protein of unknown function (DUF436) TDE_1279 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TDE_1279 PF02769 AIR synthase related protein, C-terminal domain TDE_1279 PF00586 AIR synthase related protein, N-terminal domain TDE_1284 PF02743 Cache domain TDE_1284 PF00672 HAMP domain TDE_1284 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_1285 PF14842 FliG N-terminal domain TDE_1285 PF14841 FliG middle domain TDE_1285 PF01706 FliG C-terminal domain TDE_1287 PF02559 CarD-like/TRCF domain TDE_1287 PF17757 UvrB interaction domain TDE_1287 PF00270 DEAD/DEAH box helicase TDE_1287 PF03461 TRCF domain TDE_1287 PF00271 Helicase conserved C-terminal domain TDE_1292 PF01523 Putative modulator of DNA gyrase TDE_1293 PF01523 Putative modulator of DNA gyrase TDE_1294 PF00381 PTS HPr component phosphorylation site TDE_1297 PF01476 LysM domain TDE_1297 PF00877 NlpC/P60 family TDE_1301 PF02463 RecF/RecN/SMC N terminal domain TDE_1308 PF00456 Transketolase, thiamine diphosphate binding domain TDE_1308 PF02779 Transketolase, pyrimidine binding domain TDE_1309 PF01523 Putative modulator of DNA gyrase TDE_1311 PF00664 ABC transporter transmembrane region TDE_1311 PF00005 ABC transporter TDE_1312 PF05872 Bacterial protein of unknown function (DUF853) TDE_1313 PF10502 Signal peptidase, peptidase S26 TDE_1314 PF00905 Penicillin binding protein transpeptidase domain TDE_1314 PF03717 Penicillin-binding Protein dimerisation domain TDE_1321 PF09186 Domain of unknown function (DUF1949) TDE_1321 PF01205 Uncharacterized protein family UPF0029 TDE_1330 PF03477 ATP cone domain TDE_1332 PF01145 SPFH domain / Band 7 family TDE_1333 PF01145 SPFH domain / Band 7 family TDE_1335 PF03062 MBOAT, membrane-bound O-acyltransferase family TDE_1338 PF00288 GHMP kinases N terminal domain TDE_1338 PF08544 GHMP kinases C terminal TDE_1339 PF04026 SpoVG TDE_1340 PF01386 Ribosomal L25p family TDE_1340 PF14693 Ribosomal protein TL5, C-terminal domain TDE_1341 PF01171 PP-loop family TDE_1343 PF17820 PDZ domain TDE_1343 PF13180 PDZ domain TDE_1345 PF01807 CHC2 zinc finger TDE_1345 PF08275 DNA primase catalytic core, N-terminal domain TDE_1346 PF04539 Sigma-70 region 3 TDE_1346 PF04545 Sigma-70, region 4 TDE_1346 PF00140 Sigma-70 factor, region 1.2 TDE_1346 PF03979 Sigma-70 factor, region 1.1 TDE_1346 PF04542 Sigma-70 region 2 TDE_1352 PF00905 Penicillin binding protein transpeptidase domain TDE_1352 PF03717 Penicillin-binding Protein dimerisation domain TDE_1353 PF01098 Cell cycle protein TDE_1357 PF01263 Aldose 1-epimerase TDE_1360 PF00860 Permease family TDE_1364 PF10458 Valyl tRNA synthetase tRNA binding arm TDE_1364 PF00133 tRNA synthetases class I (I, L, M and V) TDE_1364 PF08264 Anticodon-binding domain of tRNA TDE_1366 PF01066 CDP-alcohol phosphatidyltransferase TDE_1367 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TDE_1369 PF02151 UvrB/uvrC motif TDE_1369 PF04851 Type III restriction enzyme, res subunit TDE_1369 PF17757 UvrB interaction domain TDE_1369 PF00271 Helicase conserved C-terminal domain TDE_1369 PF12344 Ultra-violet resistance protein B TDE_1370 PF01256 Carbohydrate kinase TDE_1370 PF03853 YjeF-related protein N-terminus TDE_1371 PF00773 RNB domain TDE_1375 PF01467 Cytidylyltransferase-like TDE_1381 PF01991 ATP synthase (E/31 kDa) subunit TDE_1382 PF01022 Bacterial regulatory protein, arsR family TDE_1384 PF00403 Heavy-metal-associated domain TDE_1386 PF02743 Cache domain TDE_1386 PF00672 HAMP domain TDE_1386 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_1387 PF01479 S4 domain TDE_1387 PF00849 RNA pseudouridylate synthase TDE_1390 PF13375 RnfC Barrel sandwich hybrid domain TDE_1390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TDE_1390 PF13237 4Fe-4S dicluster domain TDE_1390 PF10531 SLBB domain TDE_1391 PF03116 NQR2, RnfD, RnfE family TDE_1397 PF10609 NUBPL iron-transfer P-loop NTPase TDE_1399 PF01790 Prolipoprotein diacylglyceryl transferase TDE_1400 PF02540 NAD synthase TDE_1403 PF12848 ABC transporter TDE_1403 PF16326 ABC transporter C-terminal domain TDE_1403 PF00005 ABC transporter TDE_1404 PF08239 Bacterial SH3 domain TDE_1407 PF01966 HD domain TDE_1414 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDE_1414 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TDE_1415 PF00266 Aminotransferase class-V TDE_1417 PF14524 Wzt C-terminal domain TDE_1417 PF00005 ABC transporter TDE_1422 PF00535 Glycosyl transferase family 2 TDE_1424 PF05523 WxcM-like, C-terminal TDE_1426 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TDE_1429 PF00535 Glycosyl transferase family 2 TDE_1430 PF00535 Glycosyl transferase family 2 TDE_1431 PF13439 Glycosyltransferase Family 4 TDE_1431 PF00534 Glycosyl transferases group 1 TDE_1433 PF00535 Glycosyl transferase family 2 TDE_1435 PF00535 Glycosyl transferase family 2 TDE_1435 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase TDE_1436 PF02096 60Kd inner membrane protein TDE_1437 PF00535 Glycosyl transferase family 2 TDE_1437 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 TDE_1438 PF13439 Glycosyltransferase Family 4 TDE_1438 PF00534 Glycosyl transferases group 1 TDE_1439 PF01370 NAD dependent epimerase/dehydratase family TDE_1440 PF00483 Nucleotidyl transferase TDE_1441 PF16363 GDP-mannose 4,6 dehydratase TDE_1442 PF13393 Histidyl-tRNA synthetase TDE_1443 PF00588 SpoU rRNA Methylase family TDE_1443 PF08032 RNA 2'-O ribose methyltransferase substrate binding TDE_1444 PF10996 Beta-Casp domain TDE_1444 PF00753 Metallo-beta-lactamase superfamily TDE_1444 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TDE_1448 PF01177 Asp/Glu/Hydantoin racemase TDE_1449 PF03193 RsgA GTPase TDE_1450 PF00488 MutS domain V TDE_1450 PF01713 Smr domain TDE_1453 PF16875 Glycosyl hydrolase family 36 N-terminal domain TDE_1453 PF16874 Glycosyl hydrolase family 36 C-terminal domain TDE_1454 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TDE_1458 PF01973 Protein of unknown function DUF115 TDE_1464 PF01668 SmpB protein TDE_1465 PF10502 Signal peptidase, peptidase S26 TDE_1466 PF04055 Radical SAM superfamily TDE_1466 PF06969 HemN C-terminal domain TDE_1467 PF01966 HD domain TDE_1467 PF00672 HAMP domain TDE_1469 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TDE_1472 PF07195 Flagellar hook-associated protein 2 C-terminus TDE_1472 PF02465 Flagellar hook-associated protein 2 N-terminus TDE_1475 PF00700 Bacterial flagellin C-terminal helical region TDE_1475 PF00669 Bacterial flagellin N-terminal helical region TDE_1477 PF00669 Bacterial flagellin N-terminal helical region TDE_1477 PF00700 Bacterial flagellin C-terminal helical region TDE_1482 PF00557 Metallopeptidase family M24 TDE_1482 PF01321 Creatinase/Prolidase N-terminal domain TDE_1487 PF01709 Transcriptional regulator TDE_1488 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TDE_1488 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TDE_1491 PF02895 Signal transducing histidine kinase, homodimeric domain TDE_1491 PF07194 P2 response regulator binding domain TDE_1491 PF01584 CheW-like domain TDE_1491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE_1491 PF01627 Hpt domain TDE_1492 PF01584 CheW-like domain TDE_1494 PF00072 Response regulator receiver domain TDE_1496 PF02463 RecF/RecN/SMC N terminal domain TDE_1496 PF06470 SMC proteins Flexible Hinge Domain TDE_1498 PF13525 Outer membrane lipoprotein TDE_1499 PF10397 Adenylosuccinate lyase C-terminus TDE_1499 PF00206 Lyase TDE_1501 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TDE_1501 PF00391 PEP-utilising enzyme, mobile domain TDE_1501 PF02896 PEP-utilising enzyme, TIM barrel domain TDE_1503 PF07498 Rho termination factor, N-terminal domain TDE_1503 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDE_1503 PF07497 Rho termination factor, RNA-binding domain TDE_1504 PF01197 Ribosomal protein L31 TDE_1506 PF03313 Serine dehydratase alpha chain TDE_1507 PF03315 Serine dehydratase beta chain TDE_1507 PF01842 ACT domain TDE_1509 PF00005 ABC transporter TDE_1510 PF03239 Iron permease FTR1 family TDE_1511 PF10634 Fe2+ transport protein TDE_1515 PF00005 ABC transporter TDE_1515 PF02687 FtsX-like permease family TDE_1515 PF12704 MacB-like periplasmic core domain TDE_1516 PF00005 ABC transporter TDE_1520 PF05681 Fumarate hydratase (Fumerase) TDE_1521 PF05683 Fumarase C-terminus TDE_1521 PF05681 Fumarate hydratase (Fumerase) TDE_1522 PF08218 Citrate lyase ligase C-terminal domain TDE_1523 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase TDE_1535 PF13277 YmdB-like protein TDE_1537 PF00348 Polyprenyl synthetase TDE_1538 PF03120 NAD-dependent DNA ligase OB-fold domain TDE_1538 PF01653 NAD-dependent DNA ligase adenylation domain TDE_1538 PF00533 BRCA1 C Terminus (BRCT) domain TDE_1540 PF03692 Putative zinc- or iron-chelating domain TDE_1543 PF02618 YceG-like family TDE_1547 PF01351 Ribonuclease HII TDE_1548 PF02575 YbaB/EbfC DNA-binding family TDE_1549 PF02132 RecR protein TDE_1549 PF13662 Toprim domain TDE_1550 PF00365 Phosphofructokinase TDE_1551 PF03099 Biotin/lipoate A/B protein ligase family TDE_1551 PF10437 Bacterial lipoate protein ligase C-terminus TDE_1558 PF05785 Rho-activating domain of cytotoxic necrotizing factor TDE_1558 PF18807 Tripartite Tc toxins repeat TDE_1560 PF18807 Tripartite Tc toxins repeat TDE_1560 PF05785 Rho-activating domain of cytotoxic necrotizing factor TDE_1575 PF04055 Radical SAM superfamily TDE_1576 PF04055 Radical SAM superfamily TDE_1576 PF00919 Uncharacterized protein family UPF0004 TDE_1576 PF01938 TRAM domain TDE_1578 PF12850 Calcineurin-like phosphoesterase superfamily domain TDE_1582 PF08323 Starch synthase catalytic domain TDE_1582 PF00534 Glycosyl transferases group 1 TDE_1587 PF01336 OB-fold nucleic acid binding domain TDE_1587 PF02938 GAD domain TDE_1587 PF00152 tRNA synthetases class II (D, K and N) TDE_1588 PF00579 tRNA synthetases class I (W and Y) TDE_1589 PF01584 CheW-like domain TDE_1591 PF01513 ATP-NAD kinase TDE_1592 PF12848 ABC transporter TDE_1592 PF00005 ABC transporter TDE_1593 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TDE_1593 PF00037 4Fe-4S binding domain TDE_1593 PF02906 Iron only hydrogenase large subunit, C-terminal domain TDE_1593 PF02256 Iron hydrogenase small subunit TDE_1594 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_1594 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TDE_1595 PF01888 CbiD TDE_1598 PF00005 ABC transporter TDE_1599 PF00664 ABC transporter transmembrane region TDE_1599 PF00005 ABC transporter TDE_1600 PF00664 ABC transporter transmembrane region TDE_1600 PF00005 ABC transporter TDE_1601 PF08361 MAATS-type transcriptional repressor, C-terminal region TDE_1601 PF00440 Bacterial regulatory proteins, tetR family TDE_1603 PF00005 ABC transporter TDE_1606 PF00440 Bacterial regulatory proteins, tetR family TDE_1606 PF08361 MAATS-type transcriptional repressor, C-terminal region TDE_1607 PF00293 NUDIX domain TDE_1608 PF01209 ubiE/COQ5 methyltransferase family TDE_1610 PF01381 Helix-turn-helix TDE_1616 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TDE_1616 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TDE_1624 PF02347 Glycine cleavage system P-protein TDE_1625 PF02347 Glycine cleavage system P-protein TDE_1626 PF01597 Glycine cleavage H-protein TDE_1627 PF01571 Aminomethyltransferase folate-binding domain TDE_1627 PF08669 Glycine cleavage T-protein C-terminal barrel domain TDE_1629 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_1629 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TDE_1631 PF04223 Citrate lyase, alpha subunit (CitF) TDE_1632 PF03328 HpcH/HpaI aldolase/citrate lyase family TDE_1633 PF06857 Malonate decarboxylase delta subunit (MdcD) TDE_1637 PF01367 5'-3' exonuclease, C-terminal SAM fold TDE_1637 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TDE_1637 PF00476 DNA polymerase family A TDE_1637 PF01612 3'-5' exonuclease TDE_1638 PF01121 Dephospho-CoA kinase TDE_1640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TDE_1640 PF01488 Shikimate / quinate 5-dehydrogenase TDE_1640 PF08501 Shikimate dehydrogenase substrate binding domain TDE_1641 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TDE_1643 PF03793 PASTA domain TDE_1644 PF02911 Formyl transferase, C-terminal domain TDE_1644 PF00551 Formyl transferase TDE_1645 PF01327 Polypeptide deformylase TDE_1650 PF00005 ABC transporter TDE_1651 PF02632 BioY family TDE_1652 PF00005 ABC transporter TDE_1652 PF00664 ABC transporter transmembrane region TDE_1654 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TDE_1654 PF00270 DEAD/DEAH box helicase TDE_1654 PF04408 Helicase associated domain (HA2) TDE_1654 PF00271 Helicase conserved C-terminal domain TDE_1657 PF01029 NusB family TDE_1658 PF13145 PPIC-type PPIASE domain TDE_1659 PF01411 tRNA synthetases class II (A) TDE_1659 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TDE_1662 PF00772 DnaB-like helicase N terminal domain TDE_1662 PF03796 DnaB-like helicase C terminal domain TDE_1667 PF01008 Initiation factor 2 subunit family TDE_1669 PF00155 Aminotransferase class I and II TDE_1671 PF05698 Bacterial trigger factor protein (TF) C-terminus TDE_1671 PF05697 Bacterial trigger factor protein (TF) TDE_1671 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TDE_1672 PF00574 Clp protease TDE_1673 PF06689 ClpX C4-type zinc finger TDE_1673 PF10431 C-terminal, D2-small domain, of ClpB protein TDE_1673 PF07724 AAA domain (Cdc48 subfamily) TDE_1675 PF03948 Ribosomal protein L9, C-terminal domain TDE_1675 PF01281 Ribosomal protein L9, N-terminal domain TDE_1676 PF01084 Ribosomal protein S18 TDE_1677 PF00436 Single-strand binding protein family TDE_1678 PF01250 Ribosomal protein S6 TDE_1681 PF01813 ATP synthase subunit D TDE_1682 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDE_1682 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDE_1683 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TDE_1683 PF16886 ATPsynthase alpha/beta subunit N-term extension TDE_1683 PF02874 ATP synthase alpha/beta family, beta-barrel domain TDE_1684 PF00156 Phosphoribosyl transferase domain TDE_1685 PF00563 EAL domain TDE_1685 PF01590 GAF domain TDE_1685 PF00990 Diguanylate cyclase, GGDEF domain TDE_1685 PF00360 Phytochrome region TDE_1689 PF00005 ABC transporter TDE_1696 PF07364 Metallopeptidase family M81 TDE_1696 PF07171 MlrC C-terminus TDE_1697 PF00300 Histidine phosphatase superfamily (branch 1) TDE_1706 PF18146 Damage-inducible protein CinA KH domain TDE_1706 PF02464 Competence-damaged protein TDE_1706 PF00994 Probable molybdopterin binding domain TDE_1708 PF00795 Carbon-nitrogen hydrolase TDE_1709 PF00216 Bacterial DNA-binding protein TDE_1710 PF01649 Ribosomal protein S20 TDE_1712 PF04620 Flagellar filament outer layer protein Flaa TDE_1714 PF01520 N-acetylmuramoyl-L-alanine amidase TDE_1715 PF00162 Phosphoglycerate kinase TDE_1718 PF00958 GMP synthase C terminal domain TDE_1718 PF00117 Glutamine amidotransferase class-I TDE_1718 PF01171 PP-loop family TDE_1719 PF01047 MarR family TDE_1726 PF12626 Polymerase A arginine-rich C-terminus TDE_1726 PF01743 Poly A polymerase head domain TDE_1726 PF12627 Probable RNA and SrmB- binding site of polymerase A TDE_1730 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TDE_1730 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 TDE_1730 PF16355 Domain of unknown function (DUF4982) TDE_1730 PF02837 Glycosyl hydrolases family 2, sugar binding domain TDE_1730 PF00703 Glycosyl hydrolases family 2 TDE_1732 PF01556 DnaJ C terminal domain TDE_1732 PF00226 DnaJ domain TDE_1732 PF00684 DnaJ central domain TDE_1733 PF00557 Metallopeptidase family M24 TDE_1734 PF03372 Endonuclease/Exonuclease/phosphatase family TDE_1736 PF00037 4Fe-4S binding domain TDE_1738 PF01551 Peptidase family M23 TDE_1738 PF04225 Opacity-associated protein A LysM-like domain TDE_1741 PF00905 Penicillin binding protein transpeptidase domain TDE_1741 PF00912 Transglycosylase TDE_1741 PF17092 Penicillin-binding protein OB-like domain TDE_1742 PF00501 AMP-binding enzyme TDE_1743 PF02417 Chromate transporter TDE_1744 PF02417 Chromate transporter TDE_1747 PF01467 Cytidylyltransferase-like TDE_1748 PF01926 50S ribosome-binding GTPase TDE_1748 PF01018 GTP1/OBG TDE_1749 PF01016 Ribosomal L27 protein TDE_1751 PF00829 Ribosomal prokaryotic L21 protein TDE_1752 PF13936 Helix-turn-helix domain TDE_1753 PF16363 GDP-mannose 4,6 dehydratase TDE_1754 PF06397 Desulfoferrodoxin, N-terminal domain TDE_1754 PF01880 Desulfoferrodoxin TDE_1760 PF01966 HD domain TDE_1784 PF06445 GyrI-like small molecule binding domain TDE_1784 PF12833 Helix-turn-helix domain TDE_1793 PF00795 Carbon-nitrogen hydrolase TDE_1827 PF00795 Carbon-nitrogen hydrolase TDE_1844 PF00589 Phage integrase family TDE_1844 PF13495 Phage integrase, N-terminal SAM-like domain TDE_1851 PF12704 MacB-like periplasmic core domain TDE_1851 PF02687 FtsX-like permease family TDE_1851 PF00005 ABC transporter TDE_1852 PF00005 ABC transporter TDE_1863 PF01330 RuvA N terminal domain TDE_1864 PF02075 Crossover junction endodeoxyribonuclease RuvC TDE_1865 PF05193 Peptidase M16 inactive domain TDE_1865 PF08367 Peptidase M16C associated TDE_1865 PF00675 Insulinase (Peptidase family M16) TDE_1877 PF04452 RNA methyltransferase TDE_1882 PF00232 Glycosyl hydrolase family 1 TDE_1886 PF00919 Uncharacterized protein family UPF0004 TDE_1886 PF04055 Radical SAM superfamily TDE_1889 PF05525 Branched-chain amino acid transport protein TDE_1893 PF06421 GTP-binding protein LepA C-terminus TDE_1893 PF00679 Elongation factor G C-terminus TDE_1893 PF00009 Elongation factor Tu GTP binding domain TDE_1893 PF14492 Elongation Factor G, domain II TDE_1893 PF03144 Elongation factor Tu domain 2 TDE_1894 PF04060 Putative Fe-S cluster TDE_1895 PF07650 KH domain TDE_1895 PF01926 50S ribosome-binding GTPase TDE_1896 PF01808 AICARFT/IMPCHase bienzyme TDE_1896 PF02142 MGS-like domain TDE_1897 PF00551 Formyl transferase TDE_1898 PF07516 SecA Wing and Scaffold domain TDE_1898 PF01043 SecA preprotein cross-linking domain TDE_1898 PF07517 SecA DEAD-like domain TDE_1898 PF02810 SEC-C motif TDE_1900 PF00392 Bacterial regulatory proteins, gntR family TDE_1901 PF00005 ABC transporter TDE_1907 PF01648 4'-phosphopantetheinyl transferase superfamily TDE_1909 PF02457 DisA bacterial checkpoint controller nucleotide-binding TDE_1910 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TDE_1910 PF02780 Transketolase, C-terminal domain TDE_1910 PF02779 Transketolase, pyrimidine binding domain TDE_1912 PF06971 Putative DNA-binding protein N-terminus TDE_1912 PF02629 CoA binding domain TDE_1913 PF10672 S-adenosylmethionine-dependent methyltransferase TDE_1914 PF05491 RuvB C-terminal winged helix domain TDE_1914 PF05496 Holliday junction DNA helicase RuvB P-loop domain TDE_1914 PF17864 RuvB AAA lid domain TDE_1915 PF00465 Iron-containing alcohol dehydrogenase TDE_1916 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TDE_1916 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TDE_1917 PF02348 Cytidylyltransferase TDE_1919 PF13186 Iron-sulfur cluster-binding domain TDE_1925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TDE_1927 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TDE_1927 PF03484 tRNA synthetase B5 domain TDE_1931 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TDE_1943 PF01479 S4 domain TDE_1943 PF00163 Ribosomal protein S4/S9 N-terminal domain TDE_1950 PF02608 ABC transporter substrate-binding protein PnrA-like TDE_1951 PF12706 Beta-lactamase superfamily domain TDE_1951 PF00753 Metallo-beta-lactamase superfamily TDE_1963 PF00009 Elongation factor Tu GTP binding domain TDE_1963 PF09107 Elongation factor SelB, winged helix TDE_1963 PF09106 Elongation factor SelB, winged helix TDE_1963 PF09105 Elongation factor SelB, winged helix TDE_1963 PF03144 Elongation factor Tu domain 2 TDE_1964 PF02690 Na+/Pi-cotransporter TDE_1965 PF00999 Sodium/hydrogen exchanger family TDE_1966 PF17820 PDZ domain TDE_1966 PF13180 PDZ domain TDE_1968 PF01728 FtsJ-like methyltransferase TDE_1969 PF02954 Bacterial regulatory protein, Fis family TDE_1969 PF00072 Response regulator receiver domain TDE_1969 PF00158 Sigma-54 interaction domain TDE_1970 PF00512 His Kinase A (phospho-acceptor) domain TDE_1970 PF00989 PAS fold TDE_1970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE_1971 PF09115 DNA polymerase III, delta subunit, C terminal TDE_1973 PF02674 Colicin V production protein TDE_1974 PF04101 Glycosyltransferase family 28 C-terminal domain TDE_1974 PF03033 Glycosyltransferase family 28 N-terminal domain TDE_1985 PF04773 FecR protein TDE_1986 PF00672 HAMP domain TDE_1986 PF00211 Adenylate and Guanylate cyclase catalytic domain TDE_1990 PF06733 DEAD_2 TDE_1990 PF13307 Helicase C-terminal domain TDE_1992 PF00691 OmpA family TDE_1992 PF01389 OmpA-like transmembrane domain TDE_1993 PF10415 Fumarase C C-terminus TDE_1993 PF00206 Lyase TDE_1995 PF01078 Magnesium chelatase, subunit ChlI TDE_1995 PF13335 Magnesium chelatase, subunit ChlI C-terminal TDE_1998 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TDE_1998 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TDE_1998 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TDE_1998 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TDE_1999 PF00929 Exonuclease TDE_2000 PF00005 ABC transporter TDE_2001 PF01432 Peptidase family M3 TDE_2001 PF08439 Oligopeptidase F TDE_2005 PF00440 Bacterial regulatory proteins, tetR family TDE_2007 PF00005 ABC transporter TDE_2007 PF04954 Siderophore-interacting protein TDE_2007 PF00664 ABC transporter transmembrane region TDE_2007 PF08021 Siderophore-interacting FAD-binding domain TDE_2008 PF00005 ABC transporter TDE_2008 PF00664 ABC transporter transmembrane region TDE_2009 PF17131 Outer membrane lipoprotein-sorting protein TDE_2028 PF00691 OmpA family TDE_2029 PF01026 TatD related DNase TDE_2030 PF03330 Lytic transglycolase TDE_2034 PF13439 Glycosyltransferase Family 4 TDE_2034 PF00534 Glycosyl transferases group 1 TDE_2036 PF10431 C-terminal, D2-small domain, of ClpB protein TDE_2036 PF07724 AAA domain (Cdc48 subfamily) TDE_2036 PF17871 AAA lid domain TDE_2036 PF02861 Clp amino terminal domain, pathogenicity island component TDE_2036 PF00004 ATPase family associated with various cellular activities (AAA) TDE_2037 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain TDE_2038 PF02151 UvrB/uvrC motif TDE_2040 PF00005 ABC transporter TDE_2041 PF02687 FtsX-like permease family TDE_2041 PF12704 MacB-like periplasmic core domain TDE_2043 PF02881 SRP54-type protein, helical bundle domain TDE_2043 PF00448 SRP54-type protein, GTPase domain TDE_2049 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE_2052 PF00266 Aminotransferase class-V TDE_2063 PF07670 Nucleoside recognition TDE_2063 PF17910 FeoB cytosolic helical domain TDE_2063 PF04023 FeoA domain TDE_2063 PF02421 Ferrous iron transport protein B TDE_2063 PF07664 Ferrous iron transport protein B C terminus TDE_2064 PF04023 FeoA domain TDE_2066 PF02609 Exonuclease VII small subunit TDE_2069 PF01042 Endoribonuclease L-PSP TDE_2074 PF04055 Radical SAM superfamily TDE_2075 PF03707 Bacterial signalling protein N terminal repeat TDE_2075 PF00563 EAL domain TDE_2075 PF00990 Diguanylate cyclase, GGDEF domain TDE_2079 PF00072 Response regulator receiver domain TDE_2079 PF02954 Bacterial regulatory protein, Fis family TDE_2079 PF00158 Sigma-54 interaction domain TDE_2080 PF00575 S1 RNA binding domain TDE_2084 PF00588 SpoU rRNA Methylase family TDE_2085 PF00696 Amino acid kinase family TDE_2086 PF00684 DnaJ central domain TDE_2086 PF00226 DnaJ domain TDE_2086 PF01556 DnaJ C terminal domain TDE_2087 PF01176 Translation initiation factor 1A / IF-1 TDE_2088 PF01258 Prokaryotic dksA/traR C4-type zinc finger TDE_2089 PF02978 Signal peptide binding domain TDE_2089 PF00448 SRP54-type protein, GTPase domain TDE_2089 PF02881 SRP54-type protein, helical bundle domain TDE_2090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TDE_2090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TDE_2092 PF00497 Bacterial extracellular solute-binding proteins, family 3 TDE_2095 PF00144 Beta-lactamase TDE_2096 PF07075 Protein of unknown function (DUF1343) TDE_2101 PF03781 Sulfatase-modifying factor enzyme 1 TDE_2107 PF01979 Amidohydrolase family TDE_2109 PF00271 Helicase conserved C-terminal domain TDE_2109 PF00270 DEAD/DEAH box helicase TDE_2110 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TDE_2114 PF00005 ABC transporter TDE_2114 PF13732 Domain of unknown function (DUF4162) TDE_2117 PF03687 Uncharacterised protein family (UPF0164) TDE_2118 PF00521 DNA gyrase/topoisomerase IV, subunit A TDE_2120 PF09338 Glycine/sarcosine/betaine reductase component B subunits TDE_2121 PF02677 Epoxyqueuosine reductase QueH TDE_2123 PF02617 ATP-dependent Clp protease adaptor protein ClpS TDE_2124 PF10431 C-terminal, D2-small domain, of ClpB protein TDE_2124 PF02861 Clp amino terminal domain, pathogenicity island component TDE_2124 PF17871 AAA lid domain TDE_2124 PF07724 AAA domain (Cdc48 subfamily) TDE_2124 PF00004 ATPase family associated with various cellular activities (AAA) TDE_2125 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TDE_2131 PF01891 Cobalt uptake substrate-specific transmembrane region TDE_2132 PF00005 ABC transporter TDE_2140 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain TDE_2140 PF00326 Prolyl oligopeptidase family TDE_2142 PF00672 HAMP domain TDE_2142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_2142 PF02743 Cache domain TDE_2143 PF06832 Penicillin-Binding Protein C-terminus Family TDE_2143 PF00905 Penicillin binding protein transpeptidase domain TDE_2143 PF00912 Transglycosylase TDE_2144 PF03313 Serine dehydratase alpha chain TDE_2145 PF03781 Sulfatase-modifying factor enzyme 1 TDE_2149 PF01464 Transglycosylase SLT domain TDE_2149 PF01476 LysM domain TDE_2151 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TDE_2152 PF05164 Cell division protein ZapA TDE_2154 PF00453 Ribosomal protein L20 TDE_2155 PF01632 Ribosomal protein L35 TDE_2156 PF00707 Translation initiation factor IF-3, C-terminal domain TDE_2156 PF05198 Translation initiation factor IF-3, N-terminal domain TDE_2158 PF00005 ABC transporter TDE_2161 PF13302 Acetyltransferase (GNAT) domain TDE_2162 PF01189 16S rRNA methyltransferase RsmB/F TDE_2162 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TDE_2162 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF TDE_2163 PF04298 Putative neutral zinc metallopeptidase TDE_2165 PF02492 CobW/HypB/UreG, nucleotide-binding domain TDE_2167 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TDE_2167 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_2167 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TDE_2171 PF08241 Methyltransferase domain TDE_2176 PF00239 Resolvase, N terminal domain TDE_2179 PF00654 Voltage gated chloride channel TDE_2180 PF01926 50S ribosome-binding GTPase TDE_2180 PF12631 MnmE helical domain TDE_2180 PF10396 GTP-binding protein TrmE N-terminus TDE_2181 PF01569 PAP2 superfamily TDE_2183 PF14353 CpXC protein TDE_2186 PF00501 AMP-binding enzyme TDE_2187 PF02195 ParB-like nuclease domain TDE_2187 PF17762 HTH domain found in ParB protein TDE_2189 PF01476 LysM domain TDE_2189 PF08525 Opacity-associated protein A N-terminal motif TDE_2189 PF01551 Peptidase family M23 TDE_2190 PF17768 RecJ OB domain TDE_2190 PF02272 DHHA1 domain TDE_2190 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TDE_2190 PF01368 DHH family TDE_2191 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TDE_2191 PF00591 Glycosyl transferase family, a/b domain TDE_2191 PF02885 Glycosyl transferase family, helical bundle domain TDE_2192 PF14821 Threonine synthase N terminus TDE_2192 PF00291 Pyridoxal-phosphate dependent enzyme TDE_2194 PF00155 Aminotransferase class I and II TDE_2195 PF00849 RNA pseudouridylate synthase TDE_2195 PF01479 S4 domain TDE_2198 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TDE_2198 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TDE_2198 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TDE_2198 PF10371 Domain of unknown function TDE_2198 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TDE_2199 PF01177 Asp/Glu/Hydantoin racemase TDE_2200 PF01053 Cys/Met metabolism PLP-dependent enzyme TDE_2204 PF03553 Na+/H+ antiporter family TDE_2204 PF13726 Na+-H+ antiporter family TDE_2205 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_2205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TDE_2208 PF01784 NIF3 (NGG1p interacting factor 3) TDE_2212 PF10509 Galactokinase galactose-binding signature TDE_2212 PF08544 GHMP kinases C terminal TDE_2212 PF00288 GHMP kinases N terminal domain TDE_2215 PF02653 Branched-chain amino acid transport system / permease component TDE_2216 PF00005 ABC transporter TDE_2217 PF13407 Periplasmic binding protein domain TDE_2217 PF18610 Periplasmic binding protein domain TDE_2219 PF10502 Signal peptidase, peptidase S26 TDE_2220 PF03129 Anticodon binding domain TDE_2220 PF04073 Aminoacyl-tRNA editing domain TDE_2220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE_2226 PF01297 Zinc-uptake complex component A periplasmic TDE_2228 PF07687 Peptidase dimerisation domain TDE_2228 PF01546 Peptidase family M20/M25/M40 TDE_2232 PF00005 ABC transporter TDE_2233 PF01032 FecCD transport family TDE_2234 PF01497 Periplasmic binding protein TDE_2235 PF05034 Methylaspartate ammonia-lyase N-terminus TDE_2235 PF07476 Methylaspartate ammonia-lyase C-terminus TDE_2236 PF06368 Methylaspartate mutase E chain (MutE) TDE_2239 PF03781 Sulfatase-modifying factor enzyme 1 TDE_2243 PF03932 CutC family TDE_2245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE_2245 PF01751 Toprim domain TDE_2245 PF00986 DNA gyrase B subunit, carboxyl terminus TDE_2245 PF00204 DNA gyrase B TDE_2248 PF00899 ThiF family TDE_2249 PF00953 Glycosyl transferase family 4 TDE_2251 PF00860 Permease family TDE_2257 PF02872 5'-nucleotidase, C-terminal domain TDE_2257 PF00149 Calcineurin-like phosphoesterase TDE_2264 PF00005 ABC transporter TDE_2264 PF00664 ABC transporter transmembrane region TDE_2269 PF03781 Sulfatase-modifying factor enzyme 1 TDE_2270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_2270 PF00672 HAMP domain TDE_2270 PF02743 Cache domain TDE_2271 PF01725 Ham1 family TDE_2274 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) TDE_2275 PF01416 tRNA pseudouridine synthase TDE_2277 PF02146 Sir2 family TDE_2279 PF08668 HDOD domain TDE_2283 PF00005 ABC transporter TDE_2283 PF02687 FtsX-like permease family TDE_2283 PF12704 MacB-like periplasmic core domain TDE_2286 PF03819 MazG nucleotide pyrophosphohydrolase domain TDE_2287 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TDE_2287 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TDE_2289 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TDE_2289 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE_2289 PF02824 TGS domain TDE_2289 PF03129 Anticodon binding domain TDE_2290 PF02559 CarD-like/TRCF domain TDE_2291 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TDE_2291 PF02542 YgbB family TDE_2292 PF02542 YgbB family TDE_2295 PF00924 Mechanosensitive ion channel TDE_2298 PF08544 GHMP kinases C terminal TDE_2298 PF10509 Galactokinase galactose-binding signature TDE_2299 PF00795 Carbon-nitrogen hydrolase TDE_2300 PF00595 PDZ domain TDE_2302 PF00072 Response regulator receiver domain TDE_2303 PF02021 Uncharacterised protein family UPF0102 TDE_2307 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TDE_2307 PF02403 Seryl-tRNA synthetase N-terminal domain TDE_2309 PF01590 GAF domain TDE_2309 PF00158 Sigma-54 interaction domain TDE_2315 PF01168 Alanine racemase, N-terminal domain TDE_2317 PF03006 Haemolysin-III related TDE_2318 PF10145 Phage-related minor tail protein TDE_2318 PF01551 Peptidase family M23 TDE_2318 PF01464 Transglycosylase SLT domain TDE_2323 PF00924 Mechanosensitive ion channel TDE_2324 PF00196 Bacterial regulatory proteins, luxR family TDE_2324 PF00072 Response regulator receiver domain TDE_2326 PF07685 CobB/CobQ-like glutamine amidotransferase domain TDE_2327 PF00004 ATPase family associated with various cellular activities (AAA) TDE_2327 PF10431 C-terminal, D2-small domain, of ClpB protein TDE_2327 PF02861 Clp amino terminal domain, pathogenicity island component TDE_2327 PF17871 AAA lid domain TDE_2327 PF07724 AAA domain (Cdc48 subfamily) TDE_2328 PF03806 AbgT putative transporter family TDE_2333 PF02698 DUF218 domain TDE_2335 PF00580 UvrD/REP helicase N-terminal domain TDE_2335 PF13361 UvrD-like helicase C-terminal domain TDE_2336 PF00375 Sodium:dicarboxylate symporter family TDE_2337 PF02073 Thermophilic metalloprotease (M29) TDE_2339 PF00133 tRNA synthetases class I (I, L, M and V) TDE_2339 PF08264 Anticodon-binding domain of tRNA TDE_2339 PF13603 Leucyl-tRNA synthetase, Domain 2 TDE_2339 PF09334 tRNA synthetases class I (M) TDE_2341 PF02163 Peptidase family M50 TDE_2341 PF17820 PDZ domain TDE_2342 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TDE_2342 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TDE_2342 PF13288 DXP reductoisomerase C-terminal domain TDE_2344 PF01255 Putative undecaprenyl diphosphate synthase TDE_2345 PF01765 Ribosome recycling factor TDE_2346 PF00889 Elongation factor TS TDE_2347 PF00318 Ribosomal protein S2 TDE_2348 PF02545 Maf-like protein TDE_2352 PF07196 Flagellin hook IN motif TDE_2352 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE_2353 PF00669 Bacterial flagellin N-terminal helical region TDE_2353 PF00700 Bacterial flagellin C-terminal helical region TDE_2353 PF07196 Flagellin hook IN motif TDE_2354 PF02623 FliW protein TDE_2355 PF02599 Global regulator protein family TDE_2357 PF01032 FecCD transport family TDE_2359 PF02733 Dak1 domain TDE_2359 PF02734 DAK2 domain TDE_2360 PF02733 Dak1 domain TDE_2363 PF00005 ABC transporter TDE_2364 PF00005 ABC transporter TDE_2364 PF12399 Branched-chain amino acid ATP-binding cassette transporter TDE_2365 PF11862 Domain of unknown function (DUF3382) TDE_2365 PF02653 Branched-chain amino acid transport system / permease component TDE_2366 PF02653 Branched-chain amino acid transport system / permease component TDE_2368 PF04073 Aminoacyl-tRNA editing domain TDE_2369 PF00578 AhpC/TSA family TDE_2371 PF12801 4Fe-4S binding domain TDE_2371 PF04205 FMN-binding domain TDE_2372 PF08534 Redoxin TDE_2373 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE_2374 PF05175 Methyltransferase small domain TDE_2378 PF00005 ABC transporter TDE_2381 PF07730 Histidine kinase TDE_2383 PF02654 Cobalamin-5-phosphate synthase TDE_2385 PF01820 D-ala D-ala ligase N-terminus TDE_2385 PF07478 D-ala D-ala ligase C-terminus TDE_2387 PF02446 4-alpha-glucanotransferase TDE_2388 PF00574 Clp protease TDE_2389 PF03186 CobD/Cbib protein TDE_2391 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TDE_2395 PF01424 R3H domain TDE_2395 PF14804 Jag N-terminus TDE_2396 PF02096 60Kd inner membrane protein TDE_2396 PF14849 YidC periplasmic domain TDE_2398 PF01809 Putative membrane protein insertion efficiency factor TDE_2400 PF00468 Ribosomal protein L34 TDE_2401 PF01370 NAD dependent epimerase/dehydratase family TDE_2403 PF00753 Metallo-beta-lactamase superfamily TDE_2404 PF00309 Sigma-54 factor, Activator interacting domain (AID) TDE_2404 PF04552 Sigma-54, DNA binding domain TDE_2404 PF04963 Sigma-54 factor, core binding domain TDE_2407 PF13537 Glutamine amidotransferase domain TDE_2407 PF00156 Phosphoribosyl transferase domain TDE_2410 PF00155 Aminotransferase class I and II TDE_2411 PF00343 Carbohydrate phosphorylase TDE_2420 PF04997 RNA polymerase Rpb1, domain 1 TDE_2420 PF04998 RNA polymerase Rpb1, domain 5 TDE_2420 PF05000 RNA polymerase Rpb1, domain 4 TDE_2420 PF04983 RNA polymerase Rpb1, domain 3 TDE_2420 PF00623 RNA polymerase Rpb1, domain 2 TDE_2421 PF04560 RNA polymerase Rpb2, domain 7 TDE_2421 PF00562 RNA polymerase Rpb2, domain 6 TDE_2421 PF10385 RNA polymerase beta subunit external 1 domain TDE_2421 PF04565 RNA polymerase Rpb2, domain 3 TDE_2421 PF04561 RNA polymerase Rpb2, domain 2 TDE_2421 PF04563 RNA polymerase beta subunit TDE_2422 PF16320 Ribosomal protein L7/L12 dimerisation domain TDE_2422 PF00542 Ribosomal protein L7/L12 C-terminal domain TDE_2423 PF00466 Ribosomal protein L10 TDE_2424 PF00687 Ribosomal protein L1p/L10e family TDE_2425 PF00298 Ribosomal protein L11, RNA binding domain TDE_2425 PF03946 Ribosomal protein L11, N-terminal domain TDE_2426 PF00467 KOW motif TDE_2426 PF02357 Transcription termination factor nusG TDE_2427 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TDE_2428 PF00471 Ribosomal protein L33 TDE_2431 PF03412 Peptidase C39 family TDE_2431 PF00005 ABC transporter TDE_2431 PF00664 ABC transporter transmembrane region TDE_2438 PF02254 TrkA-N domain TDE_2438 PF07885 Ion channel TDE_2439 PF05343 M42 glutamyl aminopeptidase TDE_2440 PF00005 ABC transporter TDE_2440 PF00664 ABC transporter transmembrane region TDE_2440 PF03412 Peptidase C39 family TDE_2446 PF00390 Malic enzyme, N-terminal domain TDE_2446 PF03949 Malic enzyme, NAD binding domain TDE_2447 PF01202 Shikimate kinase TDE_2449 PF01871 AMMECR1 TDE_2449 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TDE_2450 PF12796 Ankyrin repeats (3 copies) TDE_2451 PF02547 Queuosine biosynthesis protein TDE_2460 PF00266 Aminotransferase class-V TDE_2466 PF01206 Sulfurtransferase TusA TDE_2470 PF00438 S-adenosylmethionine synthetase, N-terminal domain TDE_2470 PF02772 S-adenosylmethionine synthetase, central domain TDE_2470 PF02773 S-adenosylmethionine synthetase, C-terminal domain TDE_2473 PF01165 Ribosomal protein S21 TDE_2475 PF01554 MatE TDE_2476 PF00696 Amino acid kinase family TDE_2477 PF12390 Selenocysteine synthase N terminal TDE_2477 PF03841 L-seryl-tRNA selenium transferase TDE_2478 PF01541 GIY-YIG catalytic domain TDE_2478 PF02151 UvrB/uvrC motif TDE_2478 PF08459 UvrC Helix-hairpin-helix N-terminal TDE_2480 PF00183 Hsp90 protein TDE_2488 PF17827 PrmC N-terminal domain TDE_2488 PF05175 Methyltransferase small domain TDE_2489 PF03462 PCRF domain TDE_2489 PF00472 RF-1 domain TDE_2490 PF17764 3′ DNA-binding domain (3′BD) TDE_2490 PF00271 Helicase conserved C-terminal domain TDE_2490 PF00270 DEAD/DEAH box helicase TDE_2490 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TDE_2490 PF18074 Primosomal protein N C-terminal domain TDE_2491 PF03167 Uracil DNA glycosylase superfamily TDE_2495 PF03781 Sulfatase-modifying factor enzyme 1 TDE_2496 PF16591 Helical bimodular sensor domain TDE_2496 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_2496 PF00672 HAMP domain TDE_2499 PF08241 Methyltransferase domain TDE_2501 PF00072 Response regulator receiver domain TDE_2501 PF00486 Transcriptional regulatory protein, C terminal TDE_2502 PF01627 Hpt domain TDE_2502 PF00512 His Kinase A (phospho-acceptor) domain TDE_2502 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TDE_2502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TDE_2502 PF00672 HAMP domain TDE_2502 PF00072 Response regulator receiver domain TDE_2504 PF00814 Glycoprotease family TDE_2509 PF12833 Helix-turn-helix domain TDE_2509 PF14525 AraC-binding-like domain TDE_2510 PF00005 ABC transporter TDE_2510 PF00664 ABC transporter transmembrane region TDE_2511 PF00005 ABC transporter TDE_2511 PF00664 ABC transporter transmembrane region TDE_2512 PF00171 Aldehyde dehydrogenase family TDE_2513 PF02527 rRNA small subunit methyltransferase G TDE_2515 PF03781 Sulfatase-modifying factor enzyme 1 TDE_2517 PF18073 Rubredoxin metal binding domain TDE_2517 PF06745 KaiC TDE_2518 PF10609 NUBPL iron-transfer P-loop NTPase TDE_2519 PF09820 Predicted AAA-ATPase TDE_2519 PF08011 PD-(D/E)XK nuclease superfamily TDE_2524 PF00005 ABC transporter TDE_2525 PF01973 Protein of unknown function DUF115 TDE_2527 PF04536 TPM domain TDE_2530 PF04055 Radical SAM superfamily TDE_2534 PF00730 HhH-GPD superfamily base excision DNA repair protein TDE_2535 PF02887 Pyruvate kinase, alpha/beta domain TDE_2535 PF00391 PEP-utilising enzyme, mobile domain TDE_2535 PF00224 Pyruvate kinase, barrel domain TDE_2546 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TDE_2546 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TDE_2549 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_2549 PF02743 Cache domain TDE_2549 PF00672 HAMP domain TDE_2552 PF00005 ABC transporter TDE_2552 PF00664 ABC transporter transmembrane region TDE_2553 PF01921 tRNA synthetases class I (K) TDE_2554 PF01430 Hsp33 protein TDE_2555 PF02570 Precorrin-8X methylmutase TDE_2558 PF00664 ABC transporter transmembrane region TDE_2558 PF00005 ABC transporter TDE_2559 PF00664 ABC transporter transmembrane region TDE_2559 PF00005 ABC transporter TDE_2561 PF00005 ABC transporter TDE_2562 PF00950 ABC 3 transport family TDE_2568 PF02568 Thiamine biosynthesis protein (ThiI) TDE_2568 PF02926 THUMP domain TDE_2569 PF00793 DAHP synthetase I family TDE_2570 PF00075 RNase H TDE_2571 PF02229 Transcriptional Coactivator p15 (PC4) TDE_2572 PF01066 CDP-alcohol phosphatidyltransferase TDE_2573 PF00342 Phosphoglucose isomerase TDE_2574 PF01926 50S ribosome-binding GTPase TDE_2576 PF00849 RNA pseudouridylate synthase TDE_2576 PF01479 S4 domain TDE_2579 PF00270 DEAD/DEAH box helicase TDE_2579 PF00271 Helicase conserved C-terminal domain TDE_2579 PF17191 RecG wedge domain TDE_2580 PF00990 Diguanylate cyclase, GGDEF domain TDE_2582 PF17158 Membrane-associated sensor, integral membrane domain TDE_2582 PF00990 Diguanylate cyclase, GGDEF domain TDE_2584 PF03577 Peptidase family C69 TDE_2585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_2586 PF12169 DNA polymerase III subunits gamma and tau domain III TDE_2589 PF02127 Aminopeptidase I zinc metalloprotease (M18) TDE_2592 PF03880 DbpA RNA binding domain TDE_2593 PF02830 V4R domain TDE_2593 PF06505 Activator of aromatic catabolism TDE_2593 PF02954 Bacterial regulatory protein, Fis family TDE_2593 PF00158 Sigma-54 interaction domain TDE_2597 PF00834 Ribulose-phosphate 3 epimerase family TDE_2599 PF02223 Thymidylate kinase TDE_2601 PF07244 Surface antigen variable number repeat TDE_2601 PF01103 Surface antigen TDE_2603 PF05188 MutS domain II TDE_2603 PF00488 MutS domain V TDE_2603 PF05192 MutS domain III TDE_2603 PF01624 MutS domain I TDE_2603 PF05190 MutS family domain IV TDE_2605 PF00300 Histidine phosphatase superfamily (branch 1) TDE_2606 PF17392 Urocanase C-terminal domain TDE_2606 PF01175 Urocanase Rossmann-like domain TDE_2606 PF17391 Urocanase N-terminal domain TDE_2609 PF04055 Radical SAM superfamily TDE_2609 PF00919 Uncharacterized protein family UPF0004 TDE_2609 PF18693 TRAM domain TDE_2614 PF02424 ApbE family TDE_2615 PF01252 Signal peptidase (SPase) II TDE_2616 PF00027 Cyclic nucleotide-binding domain TDE_2616 PF13545 Crp-like helix-turn-helix domain TDE_2619 PF05958 tRNA (Uracil-5-)-methyltransferase TDE_2622 PF00005 ABC transporter TDE_2625 PF00005 ABC transporter TDE_2625 PF00664 ABC transporter transmembrane region TDE_2626 PF08021 Siderophore-interacting FAD-binding domain TDE_2626 PF00005 ABC transporter TDE_2626 PF00664 ABC transporter transmembrane region TDE_2626 PF04954 Siderophore-interacting protein TDE_2629 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE_2630 PF00528 Binding-protein-dependent transport system inner membrane component TDE_2631 PF00528 Binding-protein-dependent transport system inner membrane component TDE_2631 PF12911 N-terminal TM domain of oligopeptide transport permease C TDE_2632 PF00005 ABC transporter TDE_2632 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TDE_2639 PF08439 Oligopeptidase F TDE_2639 PF01432 Peptidase family M3 TDE_2641 PF02661 Fic/DOC family TDE_2641 PF12728 Helix-turn-helix domain TDE_2643 PF01266 FAD dependent oxidoreductase TDE_2644 PF04324 BFD-like [2Fe-2S] binding domain TDE_2644 PF07992 Pyridine nucleotide-disulphide oxidoreductase TDE_2646 PF00571 CBS domain TDE_2646 PF00005 ABC transporter TDE_2647 PF10437 Bacterial lipoate protein ligase C-terminus TDE_2647 PF03099 Biotin/lipoate A/B protein ligase family TDE_2649 PF00005 ABC transporter TDE_2650 PF00392 Bacterial regulatory proteins, gntR family TDE_2650 PF00155 Aminotransferase class I and II TDE_2656 PF06180 Cobalt chelatase (CbiK) TDE_2657 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TDE_2658 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TDE_2658 PF07685 CobB/CobQ-like glutamine amidotransferase domain TDE_2659 PF11849 Domain of unknown function (DUF3369) TDE_2663 PF00133 tRNA synthetases class I (I, L, M and V) TDE_2663 PF08264 Anticodon-binding domain of tRNA TDE_2665 PF00478 IMP dehydrogenase / GMP reductase domain TDE_2665 PF00571 CBS domain TDE_2668 PF00464 Serine hydroxymethyltransferase TDE_2669 PF01066 CDP-alcohol phosphatidyltransferase TDE_2670 PF00953 Glycosyl transferase family 4 TDE_2676 PF00291 Pyridoxal-phosphate dependent enzyme TDE_2676 PF14821 Threonine synthase N terminus TDE_2683 PF04545 Sigma-70, region 4 TDE_2683 PF04539 Sigma-70 region 3 TDE_2683 PF04542 Sigma-70 region 2 TDE_2685 PF10609 NUBPL iron-transfer P-loop NTPase TDE_2686 PF00448 SRP54-type protein, GTPase domain TDE_2687 PF00155 Aminotransferase class I and II TDE_2692 PF00117 Glutamine amidotransferase class-I TDE_2692 PF06418 CTP synthase N-terminus TDE_2700 PF03390 2-hydroxycarboxylate transporter family TDE_2713 PF08032 RNA 2'-O ribose methyltransferase substrate binding TDE_2713 PF00588 SpoU rRNA Methylase family TDE_2714 PF03781 Sulfatase-modifying factor enzyme 1 TDE_2716 PF13419 Haloacid dehalogenase-like hydrolase TDE_2718 PF01769 Divalent cation transporter TDE_2718 PF03448 MgtE intracellular N domain TDE_2718 PF00571 CBS domain TDE_2720 PF04452 RNA methyltransferase TDE_2723 PF14572 Phosphoribosyl synthetase-associated domain TDE_2723 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TDE_2725 PF00990 Diguanylate cyclase, GGDEF domain TDE_2725 PF00072 Response regulator receiver domain TDE_2726 PF00990 Diguanylate cyclase, GGDEF domain TDE_2727 PF03193 RsgA GTPase TDE_2730 PF01026 TatD related DNase TDE_2731 PF01207 Dihydrouridine synthase (Dus) TDE_2739 PF00892 EamA-like transporter family TDE_2742 PF00589 Phage integrase family TDE_2742 PF02899 Phage integrase, N-terminal SAM-like domain TDE_2744 PF01420 Type I restriction modification DNA specificity domain TDE_2745 PF13332 Hemagglutinin repeat TDE_2745 PF02661 Fic/DOC family TDE_2745 PF13018 Extended Signal Peptide of Type V secretion system TDE_2745 PF05860 haemagglutination activity domain TDE_2745 PF03543 Yersinia/Haemophilus virulence surface antigen TDE_2746 PF12161 HsdM N-terminal domain TDE_2746 PF02384 N-6 DNA Methylase TDE_2747 PF08463 EcoEI R protein C-terminal TDE_2747 PF00271 Helicase conserved C-terminal domain TDE_2747 PF04851 Type III restriction enzyme, res subunit TDE_2747 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) TDE_2750 PF01926 50S ribosome-binding GTPase TDE_2750 PF13167 GTP-binding GTPase N-terminal TDE_2750 PF16360 GTP-binding GTPase Middle Region TDE_2753 PF04225 Opacity-associated protein A LysM-like domain TDE_2753 PF01551 Peptidase family M23 TDE_2754 PF02423 Ornithine cyclodeaminase/mu-crystallin family TDE_2756 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TDE_2758 PF01934 Protein of unknown function DUF86 TDE_2760 PF00813 FliP family TDE_2762 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TDE_2762 PF04509 CheC-like family TDE_2763 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TDE_2763 PF02154 Flagellar motor switch protein FliM TDE_2764 PF03748 Flagellar basal body-associated protein FliL TDE_2765 PF13677 Membrane MotB of proton-channel complex MotA/MotB TDE_2765 PF00691 OmpA family TDE_2766 PF01618 MotA/TolQ/ExbB proton channel family TDE_2768 PF07559 Flagellar basal body protein FlaE TDE_2768 PF00460 Flagella basal body rod protein TDE_2768 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TDE_2769 PF03963 Flagellar hook capping protein - N-terminal region TDE_2772 PF00005 ABC transporter TDE_2772 PF00664 ABC transporter transmembrane region TDE_2776 PF00561 alpha/beta hydrolase fold TDE_2781 PF00664 ABC transporter transmembrane region TDE_2781 PF00005 ABC transporter TDE_2782 PF00664 ABC transporter transmembrane region TDE_2782 PF00005 ABC transporter TDE_2783 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TDE_2783 PF00672 HAMP domain TDE_2783 PF02743 Cache domain TDE_2784 PF17239 Family of unknown function (DUF5312) TDE_2786 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TDE_2786 PF02811 PHP domain TDE_2786 PF07733 Bacterial DNA polymerase III alpha NTPase domain TDE_2786 PF14579 Helix-hairpin-helix motif