locus-tag class description FFV11_00005 PF11638 DnaA N-terminal domain FFV11_00005 PF08299 Bacterial dnaA protein helix-turn-helix FFV11_00005 PF00308 Bacterial dnaA protein FFV11_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain FFV11_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain FFV11_00015 PF02767 DNA polymerase III beta subunit, central domain FFV11_00020 PF02463 RecF/RecN/SMC N terminal domain FFV11_00025 PF05258 Dna[CI] antecedent, DciA FFV11_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller FFV11_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A FFV11_00040 PF12683 Protein of unknown function (DUF3798) FFV11_00055 PF12683 Protein of unknown function (DUF3798) FFV11_00060 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FFV11_00060 PF03484 tRNA synthetase B5 domain FFV11_00065 PF05362 Lon protease (S16) C-terminal proteolytic domain FFV11_00065 PF13654 AAA domain FFV11_00125 PF00209 Sodium:neurotransmitter symporter family FFV11_00135 PF05193 Peptidase M16 inactive domain FFV11_00135 PF00675 Insulinase (Peptidase family M16) FFV11_00135 PF08367 Peptidase M16C associated FFV11_00140 PF14842 FliG N-terminal domain FFV11_00140 PF01706 FliG C-terminal domain FFV11_00140 PF14841 FliG middle domain FFV11_00145 PF03471 Transporter associated domain FFV11_00145 PF01595 Cyclin M transmembrane N-terminal domain FFV11_00145 PF00571 CBS domain FFV11_00150 PF00571 CBS domain FFV11_00150 PF01595 Cyclin M transmembrane N-terminal domain FFV11_00150 PF03471 Transporter associated domain FFV11_00155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FFV11_00160 PF00118 TCP-1/cpn60 chaperonin family FFV11_00170 PF04452 RNA methyltransferase FFV11_00180 PF01297 Zinc-uptake complex component A periplasmic FFV11_00185 PF00005 ABC transporter FFV11_00190 PF00950 ABC 3 transport family FFV11_00195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FFV11_00195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FFV11_00210 PF00672 HAMP domain FFV11_00210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFV11_00215 PF01476 LysM domain FFV11_00225 PF01134 Glucose inhibited division protein A FFV11_00225 PF13932 GidA associated domain FFV11_00230 PF00962 Adenosine/AMP deaminase FFV11_00240 PF04468 PSP1 C-terminal conserved region FFV11_00255 PF01551 Peptidase family M23 FFV11_00255 PF01476 LysM domain FFV11_00255 PF08525 Opacity-associated protein A N-terminal motif FFV11_00265 PF03462 PCRF domain FFV11_00265 PF00472 RF-1 domain FFV11_00270 PF05175 Methyltransferase small domain FFV11_00270 PF17827 PrmC N-terminal domain FFV11_00275 PF00268 Ribonucleotide reductase, small chain FFV11_00290 PF02436 Conserved carboxylase domain FFV11_00290 PF00682 HMGL-like FFV11_00290 PF00364 Biotin-requiring enzyme FFV11_00295 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit FFV11_00300 PF03796 DnaB-like helicase C terminal domain FFV11_00300 PF00772 DnaB-like helicase N terminal domain FFV11_00310 PF01281 Ribosomal protein L9, N-terminal domain FFV11_00310 PF03948 Ribosomal protein L9, C-terminal domain FFV11_00315 PF01084 Ribosomal protein S18 FFV11_00320 PF00436 Single-strand binding protein family FFV11_00325 PF01250 Ribosomal protein S6 FFV11_00350 PF04055 Radical SAM superfamily FFV11_00365 PF00004 ATPase family associated with various cellular activities (AAA) FFV11_00365 PF17871 AAA lid domain FFV11_00365 PF02861 Clp amino terminal domain, pathogenicity island component FFV11_00365 PF10431 C-terminal, D2-small domain, of ClpB protein FFV11_00365 PF07724 AAA domain (Cdc48 subfamily) FFV11_00375 PF08668 HDOD domain FFV11_00395 PF00528 Binding-protein-dependent transport system inner membrane component FFV11_00400 PF02719 Polysaccharide biosynthesis protein FFV11_00405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FFV11_00420 PF00941 FAD binding domain in molybdopterin dehydrogenase FFV11_00425 PF01590 GAF domain FFV11_00425 PF00158 Sigma-54 interaction domain FFV11_00445 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FFV11_00445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FFV11_00450 PF07238 PilZ domain FFV11_00465 PF13545 Crp-like helix-turn-helix domain FFV11_00465 PF00027 Cyclic nucleotide-binding domain FFV11_00470 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FFV11_00470 PF01565 FAD binding domain FFV11_00475 PF01406 tRNA synthetases class I (C) catalytic domain FFV11_00480 PF04539 Sigma-70 region 3 FFV11_00480 PF04542 Sigma-70 region 2 FFV11_00480 PF04545 Sigma-70, region 4 FFV11_00490 PF01515 Phosphate acetyl/butaryl transferase FFV11_00495 PF13174 Tetratricopeptide repeat FFV11_00495 PF13176 Tetratricopeptide repeat FFV11_00505 PF01176 Translation initiation factor 1A / IF-1 FFV11_00510 PF01556 DnaJ C terminal domain FFV11_00510 PF00226 DnaJ domain FFV11_00510 PF00684 DnaJ central domain FFV11_00515 PF00696 Amino acid kinase family FFV11_00520 PF00578 AhpC/TSA family FFV11_00525 PF02683 Cytochrome C biogenesis protein transmembrane region FFV11_00530 PF00580 UvrD/REP helicase N-terminal domain FFV11_00530 PF13361 UvrD-like helicase C-terminal domain FFV11_00535 PF16124 RecQ zinc-binding FFV11_00535 PF00270 DEAD/DEAH box helicase FFV11_00535 PF00271 Helicase conserved C-terminal domain FFV11_00535 PF00570 HRDC domain FFV11_00535 PF09382 RQC domain FFV11_00540 PF02872 5'-nucleotidase, C-terminal domain FFV11_00540 PF00149 Calcineurin-like phosphoesterase FFV11_00545 PF01612 3'-5' exonuclease FFV11_00545 PF01367 5'-3' exonuclease, C-terminal SAM fold FFV11_00545 PF00476 DNA polymerase family A FFV11_00545 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FFV11_00550 PF02028 BCCT, betaine/carnitine/choline family transporter FFV11_00555 PF12804 MobA-like NTP transferase domain FFV11_00560 PF00365 Phosphofructokinase FFV11_00565 PF00588 SpoU rRNA Methylase family FFV11_00565 PF08032 RNA 2'-O ribose methyltransferase substrate binding FFV11_00585 PF17239 Family of unknown function (DUF5312) FFV11_00590 PF00309 Sigma-54 factor, Activator interacting domain (AID) FFV11_00590 PF04963 Sigma-54 factor, core binding domain FFV11_00590 PF04552 Sigma-54, DNA binding domain FFV11_00595 PF03051 Peptidase C1-like family FFV11_00600 PF01145 SPFH domain / Band 7 family FFV11_00605 PF01145 SPFH domain / Band 7 family FFV11_00610 PF08543 Phosphomethylpyrimidine kinase FFV11_00615 PF04851 Type III restriction enzyme, res subunit FFV11_00615 PF17757 UvrB interaction domain FFV11_00615 PF12344 Ultra-violet resistance protein B FFV11_00615 PF02151 UvrB/uvrC motif FFV11_00615 PF00271 Helicase conserved C-terminal domain FFV11_00630 PF00528 Binding-protein-dependent transport system inner membrane component FFV11_00635 PF00005 ABC transporter FFV11_00635 PF09383 NIL domain FFV11_00645 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FFV11_00645 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FFV11_00655 PF01926 50S ribosome-binding GTPase FFV11_00655 PF06071 Protein of unknown function (DUF933) FFV11_00660 PF03372 Endonuclease/Exonuclease/phosphatase family FFV11_00685 PF10895 Domain of unknown function (DUF2715) FFV11_00690 PF10895 Domain of unknown function (DUF2715) FFV11_00755 PF02254 TrkA-N domain FFV11_00755 PF02080 TrkA-C domain FFV11_00760 PF02386 Cation transport protein FFV11_00765 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FFV11_00765 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FFV11_00770 PF08402 TOBE domain FFV11_00770 PF00005 ABC transporter FFV11_00775 PF00528 Binding-protein-dependent transport system inner membrane component FFV11_00780 PF01547 Bacterial extracellular solute-binding protein FFV11_00785 PF00501 AMP-binding enzyme FFV11_00805 PF09094 Domain of unknown function (DUF1925) FFV11_00805 PF09095 Domain of unknown function (DUF1926) FFV11_00805 PF03065 Glycosyl hydrolase family 57 FFV11_00840 PF02681 Divergent PAP2 family FFV11_00875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FFV11_00875 PF04073 Aminoacyl-tRNA editing domain FFV11_00875 PF03129 Anticodon binding domain FFV11_00880 PF05491 RuvB C-terminal winged helix domain FFV11_00880 PF05496 Holliday junction DNA helicase RuvB P-loop domain FFV11_00880 PF17864 RuvB AAA lid domain FFV11_00885 PF01297 Zinc-uptake complex component A periplasmic FFV11_00895 PF00005 ABC transporter FFV11_00900 PF00950 ABC 3 transport family FFV11_00905 PF00950 ABC 3 transport family FFV11_00910 PF18357 Diphteria toxin repressor SH3 domain FFV11_00910 PF02742 Iron dependent repressor, metal binding and dimerisation domain FFV11_00910 PF01325 Iron dependent repressor, N-terminal DNA binding domain FFV11_00915 PF00300 Histidine phosphatase superfamily (branch 1) FFV11_00925 PF01048 Phosphorylase superfamily FFV11_00930 PF04205 FMN-binding domain FFV11_00945 PF01973 Protein of unknown function DUF115 FFV11_00960 PF04977 Septum formation initiator FFV11_00965 PF01300 Telomere recombination FFV11_00975 PF01668 SmpB protein FFV11_00980 PF10502 Signal peptidase, peptidase S26 FFV11_00985 PF06969 HemN C-terminal domain FFV11_00985 PF04055 Radical SAM superfamily FFV11_00990 PF00009 Elongation factor Tu GTP binding domain FFV11_00990 PF03144 Elongation factor Tu domain 2 FFV11_00990 PF03143 Elongation factor Tu C-terminal domain FFV11_00995 PF00338 Ribosomal protein S10p/S20e FFV11_01000 PF00297 Ribosomal protein L3 FFV11_01005 PF00573 Ribosomal protein L4/L1 family FFV11_01010 PF00276 Ribosomal protein L23 FFV11_01015 PF00181 Ribosomal Proteins L2, RNA binding domain FFV11_01015 PF03947 Ribosomal Proteins L2, C-terminal domain FFV11_01020 PF00203 Ribosomal protein S19 FFV11_01025 PF00237 Ribosomal protein L22p/L17e FFV11_01030 PF00189 Ribosomal protein S3, C-terminal domain FFV11_01030 PF07650 KH domain FFV11_01035 PF00252 Ribosomal protein L16p/L10e FFV11_01040 PF00831 Ribosomal L29 protein FFV11_01045 PF00366 Ribosomal protein S17 FFV11_01050 PF00238 Ribosomal protein L14p/L23e FFV11_01055 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FFV11_01055 PF00467 KOW motif FFV11_01060 PF00673 ribosomal L5P family C-terminus FFV11_01060 PF00281 Ribosomal protein L5 FFV11_01065 PF00253 Ribosomal protein S14p/S29e FFV11_01070 PF00410 Ribosomal protein S8 FFV11_01075 PF00347 Ribosomal protein L6 FFV11_01080 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FFV11_01085 PF00333 Ribosomal protein S5, N-terminal domain FFV11_01085 PF03719 Ribosomal protein S5, C-terminal domain FFV11_01090 PF00327 Ribosomal protein L30p/L7e FFV11_01095 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FFV11_01100 PF00344 SecY translocase FFV11_01105 PF00444 Ribosomal protein L36 FFV11_01110 PF00416 Ribosomal protein S13/S18 FFV11_01115 PF00411 Ribosomal protein S11 FFV11_01120 PF01000 RNA polymerase Rpb3/RpoA insert domain FFV11_01120 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FFV11_01120 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FFV11_01125 PF01196 Ribosomal protein L17 FFV11_01135 PF01025 GrpE FFV11_01140 PF00012 Hsp70 protein FFV11_01145 PF01556 DnaJ C terminal domain FFV11_01145 PF00684 DnaJ central domain FFV11_01145 PF00226 DnaJ domain FFV11_01160 PF01740 STAS domain FFV11_01205 PF02361 Cobalt transport protein FFV11_01210 PF00005 ABC transporter FFV11_01215 PF02632 BioY family FFV11_01220 PF03167 Uracil DNA glycosylase superfamily FFV11_01225 PF00270 DEAD/DEAH box helicase FFV11_01225 PF00271 Helicase conserved C-terminal domain FFV11_01225 PF17764 3′ DNA-binding domain (3′BD) FFV11_01225 PF18074 Primosomal protein N C-terminal domain FFV11_01225 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FFV11_01230 PF01479 S4 domain FFV11_01230 PF00849 RNA pseudouridylate synthase FFV11_01245 PF00471 Ribosomal protein L33 FFV11_01255 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FFV11_01260 PF00467 KOW motif FFV11_01260 PF02357 Transcription termination factor nusG FFV11_01265 PF00298 Ribosomal protein L11, RNA binding domain FFV11_01265 PF03946 Ribosomal protein L11, N-terminal domain FFV11_01270 PF00687 Ribosomal protein L1p/L10e family FFV11_01275 PF00466 Ribosomal protein L10 FFV11_01280 PF16320 Ribosomal protein L7/L12 dimerisation domain FFV11_01280 PF00542 Ribosomal protein L7/L12 C-terminal domain FFV11_01285 PF04565 RNA polymerase Rpb2, domain 3 FFV11_01285 PF10385 RNA polymerase beta subunit external 1 domain FFV11_01285 PF04563 RNA polymerase beta subunit FFV11_01285 PF04560 RNA polymerase Rpb2, domain 7 FFV11_01285 PF00562 RNA polymerase Rpb2, domain 6 FFV11_01285 PF04561 RNA polymerase Rpb2, domain 2 FFV11_01290 PF04997 RNA polymerase Rpb1, domain 1 FFV11_01290 PF00623 RNA polymerase Rpb1, domain 2 FFV11_01290 PF05000 RNA polymerase Rpb1, domain 4 FFV11_01290 PF04983 RNA polymerase Rpb1, domain 3 FFV11_01290 PF04998 RNA polymerase Rpb1, domain 5 FFV11_01295 PF00164 Ribosomal protein S12/S23 FFV11_01300 PF00177 Ribosomal protein S7p/S5e FFV11_01310 PF00092 von Willebrand factor type A domain FFV11_01315 PF01520 N-acetylmuramoyl-L-alanine amidase FFV11_01325 PF04620 Flagellar filament outer layer protein Flaa FFV11_01330 PF01649 Ribosomal protein S20 FFV11_01335 PF00216 Bacterial DNA-binding protein FFV11_01340 PF00795 Carbon-nitrogen hydrolase FFV11_01350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFV11_01350 PF07498 Rho termination factor, N-terminal domain FFV11_01350 PF07497 Rho termination factor, RNA-binding domain FFV11_01355 PF01197 Ribosomal protein L31 FFV11_01360 PF01066 CDP-alcohol phosphatidyltransferase FFV11_01365 PF03009 Glycerophosphoryl diester phosphodiesterase family FFV11_01380 PF08239 Bacterial SH3 domain FFV11_01390 PF13545 Crp-like helix-turn-helix domain FFV11_01390 PF00027 Cyclic nucleotide-binding domain FFV11_01400 PF01791 DeoC/LacD family aldolase FFV11_01410 PF05525 Branched-chain amino acid transport protein FFV11_01445 PF00919 Uncharacterized protein family UPF0004 FFV11_01445 PF04055 Radical SAM superfamily FFV11_01450 PF12627 Probable RNA and SrmB- binding site of polymerase A FFV11_01450 PF01743 Poly A polymerase head domain FFV11_01450 PF13735 tRNA nucleotidyltransferase domain 2 putative FFV11_01455 PF02195 ParB-like nuclease domain FFV11_01455 PF17762 HTH domain found in ParB protein FFV11_01460 PF13614 AAA domain FFV11_01485 PF13180 PDZ domain FFV11_01485 PF03572 Peptidase family S41 FFV11_01490 PF00575 S1 RNA binding domain FFV11_01500 PF01467 Cytidylyltransferase-like FFV11_01505 PF13186 Iron-sulfur cluster-binding domain FFV11_01515 PF02348 Cytidylyltransferase FFV11_01530 PF00691 OmpA family FFV11_01535 PF14572 Phosphoribosyl synthetase-associated domain FFV11_01535 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FFV11_01545 PF01121 Dephospho-CoA kinase FFV11_01555 PF02608 ABC transporter substrate-binding protein PnrA-like FFV11_01560 PF00005 ABC transporter FFV11_01565 PF02653 Branched-chain amino acid transport system / permease component FFV11_01570 PF02653 Branched-chain amino acid transport system / permease component FFV11_01575 PF08676 MutL C terminal dimerisation domain FFV11_01575 PF01119 DNA mismatch repair protein, C-terminal domain FFV11_01585 PF06418 CTP synthase N-terminus FFV11_01585 PF00117 Glutamine amidotransferase class-I FFV11_01590 PF00163 Ribosomal protein S4/S9 N-terminal domain FFV11_01590 PF01479 S4 domain FFV11_01600 PF00497 Bacterial extracellular solute-binding proteins, family 3 FFV11_01640 PF02608 ABC transporter substrate-binding protein PnrA-like FFV11_01665 PF01103 Surface antigen FFV11_01665 PF07244 Surface antigen variable number repeat FFV11_01675 PF00488 MutS domain V FFV11_01675 PF05192 MutS domain III FFV11_01675 PF05190 MutS family domain IV FFV11_01675 PF05188 MutS domain II FFV11_01675 PF01624 MutS domain I FFV11_01680 PF00464 Serine hydroxymethyltransferase FFV11_01700 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FFV11_01700 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FFV11_01715 PF02517 CPBP intramembrane metalloprotease FFV11_01725 PF00398 Ribosomal RNA adenine dimethylase FFV11_01735 PF00849 RNA pseudouridylate synthase FFV11_01740 PF02875 Mur ligase family, glutamate ligase domain FFV11_01740 PF08245 Mur ligase middle domain FFV11_01745 PF01225 Mur ligase family, catalytic domain FFV11_01745 PF02875 Mur ligase family, glutamate ligase domain FFV11_01745 PF08245 Mur ligase middle domain FFV11_01755 PF00633 Helix-hairpin-helix motif FFV11_01755 PF00730 HhH-GPD superfamily base excision DNA repair protein FFV11_01755 PF14815 NUDIX domain FFV11_01760 PF00271 Helicase conserved C-terminal domain FFV11_01760 PF03461 TRCF domain FFV11_01760 PF17757 UvrB interaction domain FFV11_01760 PF02559 CarD-like/TRCF domain FFV11_01760 PF00270 DEAD/DEAH box helicase FFV11_01765 PF00953 Glycosyl transferase family 4 FFV11_01780 PF10895 Domain of unknown function (DUF2715) FFV11_01790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FFV11_01800 PF00171 Aldehyde dehydrogenase family FFV11_01805 PF00696 Amino acid kinase family FFV11_01810 PF02229 Transcriptional Coactivator p15 (PC4) FFV11_01815 PF00075 RNase H FFV11_01825 PF02223 Thymidylate kinase FFV11_01840 PF02237 Biotin protein ligase C terminal domain FFV11_01840 PF08279 HTH domain FFV11_01840 PF03099 Biotin/lipoate A/B protein ligase family FFV11_01845 PF09210 Domain of unknown function (DUF1957) FFV11_01845 PF03065 Glycosyl hydrolase family 57 FFV11_01850 PF16258 Domain of unknown function (DUF4912) FFV11_01865 PF00830 Ribosomal L28 family FFV11_01875 PF01584 CheW-like domain FFV11_01875 PF02895 Signal transducing histidine kinase, homodimeric domain FFV11_01875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFV11_01875 PF01627 Hpt domain FFV11_01875 PF07194 P2 response regulator binding domain FFV11_01880 PF01584 CheW-like domain FFV11_01890 PF00072 Response regulator receiver domain FFV11_01900 PF02463 RecF/RecN/SMC N terminal domain FFV11_01900 PF06470 SMC proteins Flexible Hinge Domain FFV11_01910 PF13525 Outer membrane lipoprotein FFV11_01920 PF00288 GHMP kinases N terminal domain FFV11_01930 PF01386 Ribosomal L25p family FFV11_01930 PF14693 Ribosomal protein TL5, C-terminal domain FFV11_01935 PF01171 PP-loop family FFV11_01965 PF07517 SecA DEAD-like domain FFV11_01965 PF02810 SEC-C motif FFV11_01965 PF01043 SecA preprotein cross-linking domain FFV11_01965 PF07516 SecA Wing and Scaffold domain FFV11_01975 PF09529 Integral membrane protein (intg_mem_TP0381) FFV11_01980 PF02381 MraZ protein, putative antitoxin-like FFV11_01985 PF01795 MraW methylase family FFV11_01995 PF02875 Mur ligase family, glutamate ligase domain FFV11_01995 PF08245 Mur ligase middle domain FFV11_01995 PF01225 Mur ligase family, catalytic domain FFV11_02000 PF01098 Cell cycle protein FFV11_02005 PF03799 Cell division protein FtsQ FFV11_02005 PF08478 POTRA domain, FtsQ-type FFV11_02010 PF02491 SHS2 domain inserted in FTSA FFV11_02015 PF00091 Tubulin/FtsZ family, GTPase domain FFV11_02015 PF12327 FtsZ family, C-terminal domain FFV11_02020 PF00589 Phage integrase family FFV11_02020 PF02899 Phage integrase, N-terminal SAM-like domain FFV11_02030 PF02481 DNA recombination-mediator protein A FFV11_02030 PF17782 DprA winged helix domain FFV11_02035 PF01131 DNA topoisomerase FFV11_02035 PF01751 Toprim domain FFV11_02035 PF01396 Topoisomerase DNA binding C4 zinc finger FFV11_02040 PF02899 Phage integrase, N-terminal SAM-like domain FFV11_02040 PF00589 Phage integrase family FFV11_02045 PF00460 Flagella basal body rod protein FFV11_02050 PF00460 Flagella basal body rod protein FFV11_02050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFV11_02055 PF02049 Flagellar hook-basal body complex protein FliE FFV11_02060 PF08345 Flagellar M-ring protein C-terminal FFV11_02060 PF01514 Secretory protein of YscJ/FliF family FFV11_02065 PF14841 FliG middle domain FFV11_02065 PF14842 FliG N-terminal domain FFV11_02065 PF01706 FliG C-terminal domain FFV11_02070 PF02108 Flagellar assembly protein FliH FFV11_02075 PF18269 T3SS EscN ATPase C-terminal domain FFV11_02075 PF02874 ATP synthase alpha/beta family, beta-barrel domain FFV11_02075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFV11_02095 PF01177 Asp/Glu/Hydantoin racemase FFV11_02100 PF13419 Haloacid dehalogenase-like hydrolase FFV11_02110 PF02699 Preprotein translocase subunit FFV11_02115 PF02355 Protein export membrane protein FFV11_02120 PF02355 Protein export membrane protein FFV11_02130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FFV11_02130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FFV11_02130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FFV11_02130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FFV11_02135 PF01235 Sodium:alanine symporter family FFV11_02145 PF02881 SRP54-type protein, helical bundle domain FFV11_02145 PF02978 Signal peptide binding domain FFV11_02145 PF00448 SRP54-type protein, GTPase domain FFV11_02150 PF00795 Carbon-nitrogen hydrolase FFV11_02155 PF08544 GHMP kinases C terminal FFV11_02155 PF10509 Galactokinase galactose-binding signature FFV11_02160 PF01975 Survival protein SurE FFV11_02190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFV11_02190 PF02874 ATP synthase alpha/beta family, beta-barrel domain FFV11_02190 PF16886 ATPsynthase alpha/beta subunit N-term extension FFV11_02195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFV11_02195 PF02874 ATP synthase alpha/beta family, beta-barrel domain FFV11_02200 PF01813 ATP synthase subunit D FFV11_02215 PF03309 Type III pantothenate kinase FFV11_02230 PF04170 NlpE N-terminal domain FFV11_02235 PF01368 DHH family FFV11_02235 PF02833 DHHA2 domain FFV11_02245 PF01725 Ham1 family FFV11_02250 PF01584 CheW-like domain FFV11_02260 PF01513 ATP-NAD kinase FFV11_02265 PF02463 RecF/RecN/SMC N terminal domain FFV11_02285 PF04551 GcpE protein FFV11_02305 PF14492 Elongation Factor G, domain II FFV11_02305 PF03764 Elongation factor G, domain IV FFV11_02305 PF03144 Elongation factor Tu domain 2 FFV11_02305 PF00009 Elongation factor Tu GTP binding domain FFV11_02305 PF00679 Elongation factor G C-terminus FFV11_02315 PF00860 Permease family FFV11_02320 PF08264 Anticodon-binding domain of tRNA FFV11_02320 PF00133 tRNA synthetases class I (I, L, M and V) FFV11_02355 PF04079 Segregation and condensation complex subunit ScpB FFV11_02360 PF00849 RNA pseudouridylate synthase FFV11_02360 PF01479 S4 domain FFV11_02380 PF02390 Putative methyltransferase FFV11_02415 PF01541 GIY-YIG catalytic domain FFV11_02415 PF02151 UvrB/uvrC motif FFV11_02415 PF08459 UvrC Helix-hairpin-helix N-terminal FFV11_02425 PF01709 Transcriptional regulator FFV11_02430 PF00342 Phosphoglucose isomerase FFV11_02435 PF00871 Acetokinase family FFV11_02440 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FFV11_02445 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FFV11_02445 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FFV11_02470 PF04773 FecR protein FFV11_02475 PF00072 Response regulator receiver domain FFV11_02475 PF00211 Adenylate and Guanylate cyclase catalytic domain FFV11_02490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFV11_02490 PF00672 HAMP domain FFV11_02515 PF02618 YceG-like family FFV11_02520 PF08275 DNA primase catalytic core, N-terminal domain FFV11_02520 PF01807 CHC2 zinc finger FFV11_02525 PF04542 Sigma-70 region 2 FFV11_02525 PF03979 Sigma-70 factor, region 1.1 FFV11_02525 PF04545 Sigma-70, region 4 FFV11_02525 PF00140 Sigma-70 factor, region 1.2 FFV11_02525 PF04539 Sigma-70 region 3 FFV11_02560 PF00905 Penicillin binding protein transpeptidase domain FFV11_02560 PF03717 Penicillin-binding Protein dimerisation domain FFV11_02565 PF01098 Cell cycle protein FFV11_02570 PF12796 Ankyrin repeats (3 copies) FFV11_02605 PF05697 Bacterial trigger factor protein (TF) FFV11_02605 PF05698 Bacterial trigger factor protein (TF) C-terminus FFV11_02610 PF00574 Clp protease FFV11_02615 PF10431 C-terminal, D2-small domain, of ClpB protein FFV11_02615 PF07724 AAA domain (Cdc48 subfamily) FFV11_02615 PF06689 ClpX C4-type zinc finger FFV11_02620 PF00578 AhpC/TSA family FFV11_02625 PF03144 Elongation factor Tu domain 2 FFV11_02625 PF06421 GTP-binding protein LepA C-terminus FFV11_02625 PF14492 Elongation Factor G, domain II FFV11_02625 PF00679 Elongation factor G C-terminus FFV11_02625 PF00009 Elongation factor Tu GTP binding domain FFV11_02630 PF02559 CarD-like/TRCF domain FFV11_02635 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FFV11_02635 PF02542 YgbB family FFV11_02645 PF17760 UvrA interaction domain FFV11_02645 PF00005 ABC transporter FFV11_02645 PF17755 UvrA DNA-binding domain FFV11_02655 PF03023 Lipid II flippase MurJ FFV11_02660 PF02075 Crossover junction endodeoxyribonuclease RuvC FFV11_02670 PF02954 Bacterial regulatory protein, Fis family FFV11_02670 PF00072 Response regulator receiver domain FFV11_02670 PF00158 Sigma-54 interaction domain FFV11_02680 PF09115 DNA polymerase III, delta subunit, C terminal FFV11_02685 PF02674 Colicin V production protein FFV11_02690 PF03033 Glycosyltransferase family 28 N-terminal domain FFV11_02690 PF04101 Glycosyltransferase family 28 C-terminal domain FFV11_02695 PF00004 ATPase family associated with various cellular activities (AAA) FFV11_02695 PF05362 Lon protease (S16) C-terminal proteolytic domain FFV11_02695 PF02190 ATP-dependent protease La (LON) substrate-binding domain FFV11_02700 PF09285 Elongation factor P, C-terminal FFV11_02700 PF08207 Elongation factor P (EF-P) KOW-like domain FFV11_02700 PF01132 Elongation factor P (EF-P) OB domain FFV11_02710 PF04408 Helicase associated domain (HA2) FFV11_02710 PF00271 Helicase conserved C-terminal domain FFV11_02710 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FFV11_02710 PF00270 DEAD/DEAH box helicase FFV11_02715 PF01813 ATP synthase subunit D FFV11_02720 PF02874 ATP synthase alpha/beta family, beta-barrel domain FFV11_02720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFV11_02725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FFV11_02725 PF02874 ATP synthase alpha/beta family, beta-barrel domain FFV11_02725 PF16886 ATPsynthase alpha/beta subunit N-term extension FFV11_02745 PF01496 V-type ATPase 116kDa subunit family FFV11_02750 PF01992 ATP synthase (C/AC39) subunit FFV11_02760 PF03840 Preprotein translocase SecG subunit FFV11_02770 PF00121 Triosephosphate isomerase FFV11_02775 PF00162 Phosphoglycerate kinase FFV11_02790 PF01740 STAS domain FFV11_02800 PF07650 KH domain FFV11_02800 PF01926 50S ribosome-binding GTPase FFV11_02805 PF00365 Phosphofructokinase FFV11_02810 PF01330 RuvA N terminal domain FFV11_02820 PF13407 Periplasmic binding protein domain FFV11_02825 PF17820 PDZ domain FFV11_02825 PF13180 PDZ domain FFV11_02830 PF02401 LytB protein FFV11_02840 PF03687 Uncharacterised protein family (UPF0164) FFV11_02845 PF02861 Clp amino terminal domain, pathogenicity island component FFV11_02845 PF17871 AAA lid domain FFV11_02845 PF07724 AAA domain (Cdc48 subfamily) FFV11_02845 PF10431 C-terminal, D2-small domain, of ClpB protein FFV11_02845 PF00004 ATPase family associated with various cellular activities (AAA) FFV11_02850 PF10396 GTP-binding protein TrmE N-terminus FFV11_02850 PF12631 MnmE helical domain FFV11_02850 PF01926 50S ribosome-binding GTPase FFV11_02870 PF01594 AI-2E family transporter FFV11_02875 PF13419 Haloacid dehalogenase-like hydrolase FFV11_02885 PF03590 Aspartate-ammonia ligase FFV11_02900 PF02926 THUMP domain FFV11_02900 PF02568 Thiamine biosynthesis protein (ThiI) FFV11_02905 PF02779 Transketolase, pyrimidine binding domain FFV11_02905 PF00456 Transketolase, thiamine diphosphate binding domain FFV11_02910 PF04536 TPM domain FFV11_02915 PF03102 NeuB family FFV11_02915 PF08666 SAF domain FFV11_02920 PF00226 DnaJ domain FFV11_02935 PF03062 MBOAT, membrane-bound O-acyltransferase family FFV11_02945 PF01081 KDPG and KHG aldolase FFV11_02950 PF00557 Metallopeptidase family M24 FFV11_02950 PF01321 Creatinase/Prolidase N-terminal domain FFV11_02965 PF04205 FMN-binding domain FFV11_02965 PF01794 Ferric reductase like transmembrane component FFV11_02970 PF14888 Penicillin-binding protein Tp47 domain C FFV11_02970 PF14889 Penicillin-binding protein Tp47 domain a FFV11_02975 PF05524 PEP-utilising enzyme, N-terminal FFV11_02975 PF02896 PEP-utilising enzyme, TIM barrel domain FFV11_02975 PF00391 PEP-utilising enzyme, mobile domain FFV11_02990 PF00448 SRP54-type protein, GTPase domain FFV11_02990 PF02881 SRP54-type protein, helical bundle domain FFV11_03000 PF02687 FtsX-like permease family FFV11_03000 PF12704 MacB-like periplasmic core domain FFV11_03005 PF00005 ABC transporter FFV11_03010 PF12704 MacB-like periplasmic core domain FFV11_03010 PF02687 FtsX-like permease family FFV11_03020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FFV11_03025 PF08264 Anticodon-binding domain of tRNA FFV11_03025 PF13603 Leucyl-tRNA synthetase, Domain 2 FFV11_03025 PF09334 tRNA synthetases class I (M) FFV11_03035 PF00381 PTS HPr component phosphorylation site FFV11_03040 PF02603 HPr Serine kinase N terminus FFV11_03040 PF07475 HPr Serine kinase C-terminal domain FFV11_03080 PF05191 Adenylate kinase, active site lid FFV11_03085 PF12627 Probable RNA and SrmB- binding site of polymerase A FFV11_03085 PF12626 Polymerase A arginine-rich C-terminus FFV11_03085 PF01743 Poly A polymerase head domain FFV11_03095 PF14353 CpXC protein FFV11_03100 PF02163 Peptidase family M50 FFV11_03100 PF17820 PDZ domain FFV11_03105 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FFV11_03105 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FFV11_03105 PF13288 DXP reductoisomerase C-terminal domain FFV11_03115 PF01255 Putative undecaprenyl diphosphate synthase FFV11_03120 PF01765 Ribosome recycling factor FFV11_03125 PF00889 Elongation factor TS FFV11_03130 PF00318 Ribosomal protein S2 FFV11_03145 PF01336 OB-fold nucleic acid binding domain FFV11_03145 PF00152 tRNA synthetases class II (D, K and N) FFV11_03155 PF00005 ABC transporter FFV11_03160 PF01458 Uncharacterized protein family (UPF0051) FFV11_03165 PF01458 Uncharacterized protein family (UPF0051) FFV11_03170 PF00266 Aminotransferase class-V FFV11_03180 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FFV11_03185 PF10895 Domain of unknown function (DUF2715) FFV11_03195 PF10895 Domain of unknown function (DUF2715) FFV11_03215 PF01476 LysM domain FFV11_03215 PF01464 Transglycosylase SLT domain FFV11_03230 PF12320 Type 5 capsule protein repressor C-terminal domain FFV11_03230 PF00149 Calcineurin-like phosphoesterase FFV11_03235 PF13476 AAA domain FFV11_03240 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FFV11_03240 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain FFV11_03240 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FFV11_03250 PF03705 CheR methyltransferase, all-alpha domain FFV11_03250 PF01739 CheR methyltransferase, SAM binding domain FFV11_03255 PF01339 CheB methylesterase FFV11_03255 PF00072 Response regulator receiver domain FFV11_03260 PF00579 tRNA synthetases class I (W and Y) FFV11_03265 PF01641 SelR domain FFV11_03265 PF01625 Peptide methionine sulfoxide reductase FFV11_03270 PF03120 NAD-dependent DNA ligase OB-fold domain FFV11_03270 PF01653 NAD-dependent DNA ligase adenylation domain FFV11_03270 PF00533 BRCA1 C Terminus (BRCT) domain FFV11_03310 PF00672 HAMP domain FFV11_03310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFV11_03310 PF17202 Single cache domain 3 FFV11_03315 PF00672 HAMP domain FFV11_03315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FFV11_03320 PF13393 Histidyl-tRNA synthetase FFV11_03330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FFV11_03330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FFV11_03330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FFV11_03330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FFV11_03335 PF00929 Exonuclease FFV11_03340 PF01921 tRNA synthetases class I (K) FFV11_03350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FFV11_03350 PF02403 Seryl-tRNA synthetase N-terminal domain FFV11_03360 PF00571 CBS domain FFV11_03360 PF03471 Transporter associated domain FFV11_03365 PF02130 Uncharacterized protein family UPF0054 FFV11_03370 PF07697 7TM-HD extracellular FFV11_03370 PF07698 7TM receptor with intracellular HD hydrolase FFV11_03370 PF01966 HD domain FFV11_03375 PF00005 ABC transporter FFV11_03375 PF08402 TOBE domain FFV11_03380 PF00528 Binding-protein-dependent transport system inner membrane component FFV11_03385 PF00528 Binding-protein-dependent transport system inner membrane component FFV11_03390 PF13416 Bacterial extracellular solute-binding protein FFV11_03395 PF02599 Global regulator protein family FFV11_03400 PF02623 FliW protein FFV11_03410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFV11_03410 PF07196 Flagellin hook IN motif FFV11_03420 PF01116 Fructose-bisphosphate aldolase class-II FFV11_03425 PF04620 Flagellar filament outer layer protein Flaa FFV11_03445 PF00485 Phosphoribulokinase / Uridine kinase family FFV11_03460 PF07733 Bacterial DNA polymerase III alpha NTPase domain FFV11_03460 PF14579 Helix-hairpin-helix motif FFV11_03460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FFV11_03460 PF02811 PHP domain FFV11_03470 PF01820 D-ala D-ala ligase N-terminus FFV11_03470 PF07478 D-ala D-ala ligase C-terminus FFV11_03480 PF03129 Anticodon binding domain FFV11_03485 PF00749 tRNA synthetases class I (E and Q), catalytic domain FFV11_03490 PF01713 Smr domain FFV11_03495 PF01963 TraB family FFV11_03525 PF00814 Glycoprotease family FFV11_03530 PF00842 Alanine racemase, C-terminal domain FFV11_03530 PF01168 Alanine racemase, N-terminal domain FFV11_03535 PF01728 FtsJ-like methyltransferase FFV11_03540 PF00348 Polyprenyl synthetase FFV11_03550 PF18610 Periplasmic binding protein domain FFV11_03550 PF13407 Periplasmic binding protein domain FFV11_03555 PF00005 ABC transporter FFV11_03560 PF02653 Branched-chain amino acid transport system / permease component FFV11_03565 PF17191 RecG wedge domain FFV11_03565 PF00271 Helicase conserved C-terminal domain FFV11_03565 PF00270 DEAD/DEAH box helicase FFV11_03570 PF17676 LD-carboxypeptidase C-terminal domain FFV11_03570 PF02016 LD-carboxypeptidase N-terminal domain FFV11_03575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FFV11_03575 PF01926 50S ribosome-binding GTPase FFV11_03585 PF02616 Segregation and condensation protein ScpA FFV11_03590 PF00154 recA bacterial DNA recombination protein FFV11_03610 PF02844 Phosphoribosylglycinamide synthetase, N domain FFV11_03610 PF02843 Phosphoribosylglycinamide synthetase, C domain FFV11_03610 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FFV11_03625 PF10895 Domain of unknown function (DUF2715) FFV11_03635 PF01192 RNA polymerase Rpb6 FFV11_03650 PF01368 DHH family FFV11_03650 PF17768 RecJ OB domain FFV11_03650 PF02272 DHHA1 domain FFV11_03650 PF10141 Single-strand DNA-specific exonuclease, C terminal domain FFV11_03655 PF00905 Penicillin binding protein transpeptidase domain FFV11_03655 PF00912 Transglycosylase FFV11_03655 PF17092 Penicillin-binding protein OB-like domain FFV11_03660 PF01464 Transglycosylase SLT domain FFV11_03660 PF01551 Peptidase family M23 FFV11_03660 PF10145 Phage-related minor tail protein FFV11_03675 PF04542 Sigma-70 region 2 FFV11_03675 PF04539 Sigma-70 region 3 FFV11_03675 PF04545 Sigma-70, region 4 FFV11_03690 PF10609 NUBPL iron-transfer P-loop NTPase FFV11_03695 PF00448 SRP54-type protein, GTPase domain FFV11_03700 PF00771 FHIPEP family FFV11_03705 PF01312 FlhB HrpN YscU SpaS Family FFV11_03710 PF01311 Bacterial export proteins, family 1 FFV11_03715 PF01313 Bacterial export proteins, family 3 FFV11_03720 PF00813 FliP family FFV11_03730 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FFV11_03730 PF04509 CheC-like family FFV11_03735 PF02154 Flagellar motor switch protein FliM FFV11_03735 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FFV11_03740 PF03748 Flagellar basal body-associated protein FliL FFV11_03745 PF00691 OmpA family FFV11_03745 PF13677 Membrane MotB of proton-channel complex MotA/MotB FFV11_03750 PF01618 MotA/TolQ/ExbB proton channel family FFV11_03760 PF07559 Flagellar basal body protein FlaE FFV11_03760 PF00460 Flagella basal body rod protein FFV11_03760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFV11_03765 PF03963 Flagellar hook capping protein - N-terminal region FFV11_03785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FFV11_03785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FFV11_03790 PF13505 Outer membrane protein beta-barrel domain FFV11_03795 PF01048 Phosphorylase superfamily FFV11_03800 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FFV11_03800 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFV11_03805 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FFV11_03805 PF00175 Oxidoreductase NAD-binding domain FFV11_03805 PF00970 Oxidoreductase FAD-binding domain FFV11_03830 PF01467 Cytidylyltransferase-like FFV11_03835 PF01018 GTP1/OBG FFV11_03835 PF01926 50S ribosome-binding GTPase FFV11_03840 PF01016 Ribosomal L27 protein FFV11_03850 PF00829 Ribosomal prokaryotic L21 protein FFV11_03855 PF00391 PEP-utilising enzyme, mobile domain FFV11_03855 PF02896 PEP-utilising enzyme, TIM barrel domain FFV11_03875 PF13519 von Willebrand factor type A domain FFV11_03880 PF18663 Pallilysin beta barrel domain FFV11_03895 PF04055 Radical SAM superfamily FFV11_03895 PF01938 TRAM domain FFV11_03895 PF00919 Uncharacterized protein family UPF0004 FFV11_03900 PF05524 PEP-utilising enzyme, N-terminal FFV11_03900 PF00391 PEP-utilising enzyme, mobile domain FFV11_03900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FFV11_03900 PF00381 PTS HPr component phosphorylation site FFV11_03900 PF02896 PEP-utilising enzyme, TIM barrel domain FFV11_03905 PF02911 Formyl transferase, C-terminal domain FFV11_03905 PF00551 Formyl transferase FFV11_03910 PF01327 Polypeptide deformylase FFV11_03915 PF01165 Ribosomal protein S21 FFV11_03920 PF00905 Penicillin binding protein transpeptidase domain FFV11_03920 PF03717 Penicillin-binding Protein dimerisation domain FFV11_03920 PF03793 PASTA domain FFV11_03945 PF00004 ATPase family associated with various cellular activities (AAA) FFV11_03945 PF17862 AAA+ lid domain FFV11_03945 PF01434 Peptidase family M41 FFV11_03960 PF00009 Elongation factor Tu GTP binding domain FFV11_03960 PF03144 Elongation factor Tu domain 2 FFV11_03960 PF14492 Elongation Factor G, domain II FFV11_03960 PF00679 Elongation factor G C-terminus FFV11_03960 PF03764 Elongation factor G, domain IV FFV11_03980 PF00271 Helicase conserved C-terminal domain FFV11_03980 PF00270 DEAD/DEAH box helicase FFV11_03985 PF02690 Na+/Pi-cotransporter FFV11_03995 PF00595 PDZ domain FFV11_04010 PF02308 MgtC family FFV11_04015 PF00730 HhH-GPD superfamily base excision DNA repair protein FFV11_04035 PF03819 MazG nucleotide pyrophosphohydrolase domain FFV11_04040 PF09335 SNARE associated Golgi protein FFV11_04045 PF02540 NAD synthase FFV11_04070 PF00005 ABC transporter FFV11_04070 PF12399 Branched-chain amino acid ATP-binding cassette transporter FFV11_04085 PF17131 Outer membrane lipoprotein-sorting protein FFV11_04100 PF00700 Bacterial flagellin C-terminal helical region FFV11_04100 PF00669 Bacterial flagellin N-terminal helical region FFV11_04110 PF02772 S-adenosylmethionine synthetase, central domain FFV11_04110 PF02773 S-adenosylmethionine synthetase, C-terminal domain FFV11_04110 PF00438 S-adenosylmethionine synthetase, N-terminal domain FFV11_04115 PF02424 ApbE family FFV11_04120 PF14748 Pyrroline-5-carboxylate reductase dimerisation FFV11_04120 PF03807 NADP oxidoreductase coenzyme F420-dependent FFV11_04125 PF01588 Putative tRNA binding domain FFV11_04125 PF09334 tRNA synthetases class I (M) FFV11_04130 PF00768 D-alanyl-D-alanine carboxypeptidase FFV11_04130 PF07943 Penicillin-binding protein 5, C-terminal domain FFV11_04135 PF17871 AAA lid domain FFV11_04135 PF07724 AAA domain (Cdc48 subfamily) FFV11_04135 PF00004 ATPase family associated with various cellular activities (AAA) FFV11_04135 PF02861 Clp amino terminal domain, pathogenicity island component FFV11_04135 PF10431 C-terminal, D2-small domain, of ClpB protein FFV11_04150 PF03459 TOBE domain FFV11_04150 PF00005 ABC transporter FFV11_04150 PF17912 MalK OB fold domain FFV11_04155 PF00773 RNB domain FFV11_04165 PF01783 Ribosomal L32p protein family FFV11_04170 PF00550 Phosphopantetheine attachment site FFV11_04175 PF14622 Ribonuclease-III-like FFV11_04175 PF00035 Double-stranded RNA binding motif FFV11_04180 PF02086 D12 class N6 adenine-specific DNA methyltransferase FFV11_04200 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFV11_04215 PF00113 Enolase, C-terminal TIM barrel domain FFV11_04215 PF03952 Enolase, N-terminal domain FFV11_04220 PF12706 Beta-lactamase superfamily domain FFV11_04220 PF00753 Metallo-beta-lactamase superfamily FFV11_04230 PF03180 NLPA lipoprotein FFV11_04235 PF00924 Mechanosensitive ion channel FFV11_04235 PF05552 Conserved TM helix FFV11_04240 PF01880 Desulfoferrodoxin FFV11_04245 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FFV11_04245 PF02779 Transketolase, pyrimidine binding domain FFV11_04245 PF02780 Transketolase, C-terminal domain FFV11_04255 PF02457 DisA bacterial checkpoint controller nucleotide-binding FFV11_04265 PF01648 4'-phosphopantetheinyl transferase superfamily FFV11_04270 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) FFV11_04275 PF01416 tRNA pseudouridine synthase FFV11_04280 PF00750 tRNA synthetases class I (R) FFV11_04280 PF03485 Arginyl tRNA synthetase N terminal domain FFV11_04280 PF05746 DALR anticodon binding domain FFV11_04295 PF00579 tRNA synthetases class I (W and Y) FFV11_04310 PF03129 Anticodon binding domain FFV11_04310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FFV11_04310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FFV11_04315 PF12848 ABC transporter FFV11_04315 PF00005 ABC transporter FFV11_04320 PF13349 Putative adhesin FFV11_04330 PF00595 PDZ domain FFV11_04340 PF00557 Metallopeptidase family M24 FFV11_04350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FFV11_04350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FFV11_04355 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FFV11_04360 PF05164 Cell division protein ZapA FFV11_04370 PF00453 Ribosomal protein L20 FFV11_04375 PF01632 Ribosomal protein L35 FFV11_04380 PF05198 Translation initiation factor IF-3, N-terminal domain FFV11_04380 PF00707 Translation initiation factor IF-3, C-terminal domain FFV11_04385 PF16314 Domain of unknown function (DUF4954) FFV11_04390 PF01790 Prolipoprotein diacylglyceryl transferase FFV11_04395 PF10609 NUBPL iron-transfer P-loop NTPase FFV11_04410 PF03687 Uncharacterised protein family (UPF0164) FFV11_04415 PF03687 Uncharacterised protein family (UPF0164) FFV11_04425 PF01380 SIS domain FFV11_04430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FFV11_04430 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FFV11_04435 PF00266 Aminotransferase class-V FFV11_04440 PF01476 LysM domain FFV11_04440 PF05257 CHAP domain FFV11_04445 PF03687 Uncharacterised protein family (UPF0164) FFV11_04450 PF13335 Magnesium chelatase, subunit ChlI C-terminal FFV11_04450 PF01078 Magnesium chelatase, subunit ChlI FFV11_04475 PF00669 Bacterial flagellin N-terminal helical region FFV11_04475 PF00700 Bacterial flagellin C-terminal helical region FFV11_04480 PF07195 Flagellar hook-associated protein 2 C-terminus FFV11_04480 PF02465 Flagellar hook-associated protein 2 N-terminus FFV11_04495 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FFV11_04500 PF00814 Glycoprotease family FFV11_04505 PF00672 HAMP domain FFV11_04505 PF01966 HD domain FFV11_04510 PF14238 Domain of unknown function (DUF4340) FFV11_04525 PF00005 ABC transporter FFV11_04545 PF00692 dUTPase FFV11_04550 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FFV11_04550 PF00575 S1 RNA binding domain FFV11_04550 PF01138 3' exoribonuclease family, domain 1 FFV11_04550 PF03725 3' exoribonuclease family, domain 2 FFV11_04550 PF00013 KH domain FFV11_04555 PF00312 Ribosomal protein S15 FFV11_04565 PF16198 tRNA pseudouridylate synthase B C-terminal domain FFV11_04565 PF01509 TruB family pseudouridylate synthase (N terminal domain) FFV11_04570 PF02033 Ribosome-binding factor A FFV11_04575 PF11987 Translation-initiation factor 2 FFV11_04575 PF00009 Elongation factor Tu GTP binding domain FFV11_04575 PF04760 Translation initiation factor IF-2, N-terminal region FFV11_04580 PF00575 S1 RNA binding domain FFV11_04580 PF08529 NusA N-terminal domain FFV11_04580 PF13184 NusA-like KH domain FFV11_04585 PF17384 RimP C-terminal SH3 domain FFV11_04585 PF02576 RimP N-terminal domain FFV11_04605 PF00580 UvrD/REP helicase N-terminal domain FFV11_04605 PF12705 PD-(D/E)XK nuclease superfamily FFV11_04605 PF13361 UvrD-like helicase C-terminal domain FFV11_04610 PF12705 PD-(D/E)XK nuclease superfamily FFV11_04615 PF01554 MatE FFV11_04625 PF08245 Mur ligase middle domain FFV11_04625 PF02875 Mur ligase family, glutamate ligase domain FFV11_04635 PF00886 Ribosomal protein S16 FFV11_04645 PF01782 RimM N-terminal domain FFV11_04650 PF01746 tRNA (Guanine-1)-methyltransferase FFV11_04655 PF01245 Ribosomal protein L19 FFV11_04665 PF01312 FlhB HrpN YscU SpaS Family FFV11_04670 PF01966 HD domain FFV11_04670 PF11871 Domain of unknown function (DUF3391) FFV11_04675 PF02021 Uncharacterised protein family UPF0102 FFV11_04695 PF00571 CBS domain FFV11_04695 PF01769 Divalent cation transporter FFV11_04695 PF03448 MgtE intracellular N domain FFV11_04705 PF00085 Thioredoxin FFV11_04715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FFV11_04715 PF07992 Pyridine nucleotide-disulphide oxidoreductase FFV11_04725 PF08308 PEGA domain FFV11_04745 PF00258 Flavodoxin FFV11_04750 PF10502 Signal peptidase, peptidase S26 FFV11_04765 PF01973 Protein of unknown function DUF115 FFV11_04770 PF01204 Trehalase FFV11_04775 PF02875 Mur ligase family, glutamate ligase domain FFV11_04775 PF01225 Mur ligase family, catalytic domain FFV11_04775 PF08245 Mur ligase middle domain FFV11_04790 PF07859 alpha/beta hydrolase fold FFV11_04800 PF00571 CBS domain FFV11_04800 PF03471 Transporter associated domain FFV11_04800 PF01595 Cyclin M transmembrane N-terminal domain FFV11_04840 PF00834 Ribulose-phosphate 3 epimerase family FFV11_04845 PF02527 rRNA small subunit methyltransferase G FFV11_04850 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FFV11_04855 PF01424 R3H domain FFV11_04855 PF14804 Jag N-terminus FFV11_04860 PF02096 60Kd inner membrane protein FFV11_04860 PF14849 YidC periplasmic domain FFV11_04865 PF01809 Putative membrane protein insertion efficiency factor FFV11_04875 PF00468 Ribosomal protein L34 FFV11_04900 PF16811 TRAP transporter T-component FFV11_04910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FFV11_04915 PF10135 Rod binding protein FFV11_04920 PF00460 Flagella basal body rod protein FFV11_04920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFV11_04925 PF00460 Flagella basal body rod protein FFV11_04925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FFV11_04930 PF00005 ABC transporter FFV11_04930 PF02687 FtsX-like permease family FFV11_04930 PF12704 MacB-like periplasmic core domain FFV11_04935 PF00005 ABC transporter FFV11_04935 PF02687 FtsX-like permease family FFV11_04935 PF12704 MacB-like periplasmic core domain FFV11_04940 PF00005 ABC transporter FFV11_04945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FFV11_04970 PF10634 Fe2+ transport protein FFV11_04975 PF03239 Iron permease FTR1 family FFV11_04980 PF01409 tRNA synthetases class II core domain (F) FFV11_04990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FFV11_05000 PF01784 NIF3 (NGG1p interacting factor 3) FFV11_05005 PF01252 Signal peptidase (SPase) II FFV11_05010 PF01026 TatD related DNase FFV11_05015 PF01207 Dihydrouridine synthase (Dus) FFV11_05025 PF00072 Response regulator receiver domain FFV11_05025 PF00990 Diguanylate cyclase, GGDEF domain FFV11_05040 PF00183 Hsp90 protein FFV11_05050 PF01336 OB-fold nucleic acid binding domain FFV11_05050 PF00152 tRNA synthetases class II (D, K and N) FFV11_05050 PF02938 GAD domain FFV11_05055 PF00892 EamA-like transporter family FFV11_05065 PF01914 MarC family integral membrane protein FFV11_05080 PF00301 Rubredoxin FFV11_05090 PF03330 Lytic transglycolase FFV11_05100 PF01026 TatD related DNase FFV11_05120 PF01343 Peptidase family S49 FFV11_05125 PF01235 Sodium:alanine symporter family FFV11_05130 PF01580 FtsK/SpoIIIE family FFV11_05130 PF17854 FtsK alpha domain FFV11_05130 PF09397 Ftsk gamma domain FFV11_05155 PF13662 Toprim domain FFV11_05160 PF12169 DNA polymerase III subunits gamma and tau domain III FFV11_05165 PF00204 DNA gyrase B FFV11_05165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FFV11_05165 PF01751 Toprim domain FFV11_05165 PF00986 DNA gyrase B subunit, carboxyl terminus FFV11_05170 PF02511 Thymidylate synthase complementing protein FFV11_05175 PF03477 ATP cone domain FFV11_05175 PF00317 Ribonucleotide reductase, all-alpha domain FFV11_05175 PF02867 Ribonucleotide reductase, barrel domain FFV11_05180 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FFV11_05180 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FFV11_05185 PF00334 Nucleoside diphosphate kinase FFV11_05190 PF01195 Peptidyl-tRNA hydrolase FFV11_05195 PF04539 Sigma-70 region 3 FFV11_05195 PF03979 Sigma-70 factor, region 1.1 FFV11_05195 PF04545 Sigma-70, region 4 FFV11_05195 PF04542 Sigma-70 region 2 FFV11_05195 PF00140 Sigma-70 factor, region 1.2 FFV11_05200 PF00166 Chaperonin 10 Kd subunit FFV11_05210 PF01029 NusB family FFV11_05215 PF13145 PPIC-type PPIASE domain FFV11_05220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FFV11_05220 PF01411 tRNA synthetases class II (A) FFV11_05230 PF01966 HD domain FFV11_05230 PF00013 KH domain FFV11_05230 PF12072 Domain of unknown function (DUF3552) FFV11_05240 PF01425 Amidase FFV11_05245 PF02637 GatB domain FFV11_05245 PF02934 GatB/GatE catalytic domain FFV11_05250 PF06745 KaiC FFV11_05250 PF18073 Rubredoxin metal binding domain FFV11_05255 PF02631 RecX family FFV11_05260 PF00380 Ribosomal protein S9/S16 FFV11_05265 PF00572 Ribosomal protein L13 FFV11_05280 PF01048 Phosphorylase superfamily FFV11_05285 PF00580 UvrD/REP helicase N-terminal domain FFV11_05285 PF13361 UvrD-like helicase C-terminal domain FFV11_05290 PF03880 DbpA RNA binding domain FFV11_05300 PF07009 NusG domain II FFV11_05305 PF01734 Patatin-like phospholipase FFV11_05310 PF01699 Sodium/calcium exchanger protein FFV11_05315 PF10458 Valyl tRNA synthetase tRNA binding arm FFV11_05315 PF00133 tRNA synthetases class I (I, L, M and V) FFV11_05315 PF08264 Anticodon-binding domain of tRNA FFV11_05320 PF00403 Heavy-metal-associated domain FFV11_05325 PF03006 Haemolysin-III related FFV11_05330 PF00210 Ferritin-like domain FFV11_05335 PF00156 Phosphoribosyl transferase domain FFV11_05340 PF00152 tRNA synthetases class II (D, K and N) FFV11_05345 PF00574 Clp protease