TP_0001 PF00308 Bacterial dnaA protein TP_0001 PF08299 Bacterial dnaA protein helix-turn-helix TP_0001 PF11638 DnaA N-terminal domain TP_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain TP_0002 PF02767 DNA polymerase III beta subunit, central domain TP_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain TP_0003 PF02463 RecF/RecN/SMC N terminal domain TP_0004 PF05258 TP_0004 TP_0005 PF00521 DNA gyrase/topoisomerase IV, subunit A TP_0005 PF03989 DNA gyrase C-terminal domain, beta-propeller TP_0007 PF12683 Protein of unknown function (DUF3798) TP_0011 PF02707 TP_0011 TP_0011 PF02722 TP_0011 TP_0013 PF12683 Protein of unknown function (DUF3798) TP_0014 PF12683 Protein of unknown function (DUF3798) TP_0015 PF03484 tRNA synthetase B5 domain TP_0016 PF05362 Lon protease (S16) C-terminal proteolytic domain TP_0016 PF13654 AAA domain TP_0019 PF01272 Transcription elongation factor, GreA/GreB, C-term TP_0019 PF03449 Transcription elongation factor, N-terminal TP_0020 PF00092 von Willebrand factor type A domain TP_0023 PF00209 Sodium:neurotransmitter symporter family TP_0024 PF02080 TrkA-C domain TP_0024 PF02254 TrkA-N domain TP_0025 PF00675 Insulinase (Peptidase family M16) TP_0025 PF05193 Peptidase M16 inactive domain TP_0025 PF08367 Peptidase M16C associated TP_0026 PF01706 FliG C-terminal domain TP_0026 PF14841 FliG middle domain TP_0026 PF14842 FliG N-terminal domain TP_0027 PF01595 TP_0027 TP_0027 PF03471 Transporter associated domain TP_0028 PF01595 TP_0028 TP_0028 PF03471 Transporter associated domain TP_0029 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TP_0030 PF00118 TCP-1/cpn60 chaperonin family TP_0032 PF04452 RNA methyltransferase TP_0033 PF07099 TP_0033 TP_0034 PF01297 Periplasmic solute binding protein family TP_0035 PF00005 ABC transporter TP_0036 PF00950 TP_0036 TP_0037 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TP_0037 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TP_0038 PF13303 TP_0038 TP_0040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP_0042 PF01476 LysM domain TP_0043 PF01464 Transglycosylase SLT domain TP_0044 PF01134 Glucose inhibited division protein A TP_0044 PF13932 GidA associated domain 3 TP_0045 PF00962 Adenosine/AMP deaminase TP_0046 PF04468 TP_0046 TP_0047 PF03885 Protein of unknown function (DUF327) TP_0048 PF04519 TP_0048 TP_0049 PF01551 Peptidase family M23 TP_0050 PF00156 Phosphoribosyl transferase domain TP_0051 PF00472 RF-1 domain TP_0051 PF03462 PCRF domain TP_0053 PF00268 Ribonucleotide reductase, small chain TP_0054 PF00588 SpoU rRNA Methylase family TP_0054 PF08032 RNA 2'-O ribose methyltransferase substrate binding TP_0055 PF04277 TP_0055 TP_0056 PF00364 Biotin-requiring enzyme TP_0056 PF00682 HMGL-like TP_0056 PF02436 Conserved carboxylase domain TP_0057 PF03977 TP_0057 TP_0058 PF00772 DnaB-like helicase N terminal domain TP_0058 PF03796 DnaB-like helicase C terminal domain TP_0060 PF01281 Ribosomal protein L9, N-terminal domain TP_0060 PF03948 Ribosomal protein L9, C-terminal domain TP_0061 PF01084 Ribosomal protein S18 TP_0062 PF00436 Single-strand binding protein family TP_0063 PF01250 Ribosomal protein S6 TP_0065 PF03602 Conserved hypothetical protein 95 TP_0067 PF13176 Tetratricopeptide repeat TP_0067 PF13181 Tetratricopeptide repeat TP_0067 PF13432 Tetratricopeptide repeat TP_0067 PF14559 Tetratricopeptide repeat TP_0068 PF04055 Radical SAM superfamily TP_0071 PF00004 ATPase family associated with various cellular activities (AAA) TP_0071 PF02861 Clp amino terminal domain TP_0071 PF07724 AAA domain (Cdc48 subfamily) TP_0071 PF10431 C-terminal, D2-small domain, of ClpB protein TP_0072 PF00462 Glutaredoxin TP_0073 PF08668 HDOD domain TP_0074 PF01547 Bacterial extracellular solute-binding protein TP_0075 PF00528 Binding-protein-dependent transport system inner membrane component TP_0076 PF00528 Binding-protein-dependent transport system inner membrane component TP_0077 PF02719 Polysaccharide biosynthesis protein TP_0078 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TP_0079 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TP_0080 PF01799 [2Fe-2S] binding domain TP_0081 PF00941 FAD binding domain in molybdopterin dehydrogenase TP_0082 PF00158 Sigma-54 interaction domain TP_0082 PF02954 Bacterial regulatory protein, Fis family TP_0082 PF13492 GAF domain TP_0083 PF13200 TP_0083 TP_0085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TP_0086 PF07238 PilZ domain TP_0087 PF02643 Uncharacterized ACR, COG1430 TP_0089 PF00027 Cyclic nucleotide-binding domain TP_0090 PF01565 FAD binding domain TP_0090 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TP_0091 PF01406 tRNA synthetases class I (C) catalytic domain TP_0092 PF04542 Sigma-70 region 2 TP_0092 PF08281 Sigma-70, region 4 TP_0094 PF01515 Phosphate acetyl/butaryl transferase TP_0095 PF13174 Tetratricopeptide repeat TP_0095 PF13176 Tetratricopeptide repeat TP_0096 PF01258 Prokaryotic dksA/traR C4-type zinc finger TP_0097 PF01176 Translation initiation factor 1A / IF-1 TP_0098 PF00226 DnaJ domain TP_0099 PF00696 Amino acid kinase family TP_0100 PF08534 Redoxin TP_0101 PF02683 TP_0101 TP_0102 PF00580 UvrD/REP helicase N-terminal domain TP_0102 PF13361 UvrD-like helicase C-terminal domain TP_0103 PF00271 Helicase conserved C-terminal domain TP_0104 PF00149 Calcineurin-like phosphoesterase TP_0104 PF02872 5'-nucleotidase, C-terminal domain TP_0105 PF00476 DNA polymerase family A TP_0105 PF01367 5'-3' exonuclease, C-terminal SAM fold TP_0105 PF01612 3'-5' exonuclease TP_0105 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TP_0106 PF02028 BCCT family transporter TP_0107 PF01636 Phosphotransferase enzyme family TP_0107 PF12804 MobA-like NTP transferase domain TP_0108 PF00365 Phosphofructokinase TP_0109 PF00588 SpoU rRNA Methylase family TP_0110 PF17239 TP_0110 TP_0111 PF00309 TP_0111 TP_0111 PF04552 Sigma-54, DNA binding domain TP_0111 PF04963 Sigma-54 factor, core binding domain TP_0112 PF03051 Peptidase C1-like family TP_0113 PF01145 SPFH domain / Band 7 family TP_0114 PF01145 SPFH domain / Band 7 family TP_0115 PF08543 Phosphomethylpyrimidine kinase TP_0116 PF00271 Helicase conserved C-terminal domain TP_0116 PF02151 UvrB/uvrC motif TP_0116 PF04851 Type III restriction enzyme, res subunit TP_0116 PF12344 Ultra-violet resistance protein B TP_0117 PF02707 TP_0117 TP_0117 PF02722 TP_0117 TP_0119 PF00528 Binding-protein-dependent transport system inner membrane component TP_0120 PF00005 ABC transporter TP_0121 PF13353 4Fe-4S single cluster domain TP_0122 PF00821 Phosphoenolpyruvate carboxykinase TP_0122 PF17297 TP_0122 TP_0124 PF01926 50S ribosome-binding GTPase TP_0124 PF06071 Protein of unknown function (DUF933) TP_0125 PF03372 Endonuclease/Exonuclease/phosphatase family TP_0127 PF10895 TP_0127 TP_0131 PF02707 TP_0131 TP_0131 PF02722 TP_0131 TP_0139 PF02254 TrkA-N domain TP_0140 PF02386 Cation transport protein TP_0141 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TP_0142 PF00005 ABC transporter TP_0143 PF00528 Binding-protein-dependent transport system inner membrane component TP_0144 PF13343 Bacterial extracellular solute-binding protein TP_0145 PF00501 AMP-binding enzyme TP_0147 PF03065 Glycosyl hydrolase family 57 TP_0147 PF09095 Domain of unknown function (DUF1926) TP_0151 PF03116 TP_0151 TP_0152 PF10531 SLBB domain TP_0152 PF13375 RnfC Barrel sandwich hybrid domain TP_0153 PF02681 TP_0153 TP_0154 PF00849 RNA pseudouridylate synthase TP_0154 PF01479 S4 domain TP_0155 PF01476 LysM domain TP_0155 PF01551 Peptidase family M23 TP_0156 PF03061 Thioesterase superfamily TP_0157 PF01553 Acyltransferase TP_0158 PF00702 haloacid dehalogenase-like hydrolase TP_0160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP_0160 PF03129 Anticodon binding domain TP_0160 PF04073 Aminoacyl-tRNA editing domain TP_0162 PF05491 Holliday junction DNA helicase ruvB C-terminus TP_0162 PF05496 Holliday junction DNA helicase ruvB N-terminus TP_0163 PF01297 Periplasmic solute binding protein family TP_0164 PF00005 ABC transporter TP_0165 PF00950 TP_0165 TP_0166 PF00950 TP_0166 TP_0167 PF01325 Iron dependent repressor, N-terminal DNA binding domain TP_0167 PF02742 Iron dependent repressor, metal binding and dimerisation domain TP_0168 PF00300 Histidine phosphatase superfamily (branch 1) TP_0170 PF01048 Phosphorylase superfamily TP_0171 PF04205 FMN-binding domain TP_0175 PF01973 TP_0175 TP_0177 PF01973 TP_0177 TP_0181 PF04977 Septum formation initiator TP_0182 PF01300 Telomere recombination TP_0184 PF01668 SmpB protein TP_0185 PF00717 Peptidase S24-like TP_0186 PF04055 Radical SAM superfamily TP_0186 PF06969 HemN C-terminal domain TP_0187 PF00009 Elongation factor Tu GTP binding domain TP_0187 PF03143 Elongation factor Tu C-terminal domain TP_0187 PF03144 Elongation factor Tu domain 2 TP_0188 PF00338 Ribosomal protein S10p/S20e TP_0189 PF00297 Ribosomal protein L3 TP_0190 PF00573 Ribosomal protein L4/L1 family TP_0191 PF00276 Ribosomal protein L23 TP_0192 PF00181 Ribosomal Proteins L2, RNA binding domain TP_0192 PF03947 Ribosomal Proteins L2, C-terminal domain TP_0193 PF00203 Ribosomal protein S19 TP_0194 PF00237 Ribosomal protein L22p/L17e TP_0195 PF00189 Ribosomal protein S3, C-terminal domain TP_0195 PF07650 KH domain TP_0196 PF00252 Ribosomal protein L16p/L10e TP_0197 PF00831 Ribosomal L29 protein TP_0198 PF00366 Ribosomal protein S17 TP_0199 PF00238 Ribosomal protein L14p/L23e TP_0200 PF00467 KOW motif TP_0200 PF17136 TP_0200 TP_0201 PF00281 Ribosomal protein L5 TP_0201 PF00673 ribosomal L5P family C-terminus TP_0202 PF00253 Ribosomal protein S14p/S29e TP_0203 PF00410 Ribosomal protein S8 TP_0204 PF00347 Ribosomal protein L6 TP_0205 PF00861 Ribosomal L18p/L5e family TP_0206 PF00333 Ribosomal protein S5, N-terminal domain TP_0206 PF03719 Ribosomal protein S5, C-terminal domain TP_0207 PF00828 Ribosomal protein L18e/L15 TP_0208 PF00344 SecY translocase TP_0209 PF00444 Ribosomal protein L36 TP_0210 PF00416 Ribosomal protein S13/S18 TP_0211 PF00411 Ribosomal protein S11 TP_0212 PF01000 RNA polymerase Rpb3/RpoA insert domain TP_0212 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TP_0212 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TP_0213 PF01196 Ribosomal protein L17 TP_0215 PF01025 GrpE TP_0216 PF00012 Hsp70 protein TP_0218 PF07228 Stage II sporulation protein E (SpoIIE) TP_0219 PF07228 Stage II sporulation protein E (SpoIIE) TP_0220 PF01740 STAS domain TP_0221 PF02557 D-alanyl-D-alanine carboxypeptidase TP_0223 PF00155 Aminotransferase class I and II TP_0225 PF13306 Leucine rich repeats (6 copies) TP_0226 PF02361 Cobalt transport protein TP_0227 PF00005 ABC transporter TP_0228 PF02632 BioY family TP_0229 PF03167 Uracil DNA glycosylase superfamily TP_0230 PF00270 DEAD/DEAH box helicase TP_0230 PF00271 Helicase conserved C-terminal domain TP_0231 PF00849 RNA pseudouridylate synthase TP_0233 PF01740 STAS domain TP_0234 PF00471 Ribosomal protein L33 TP_0235 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TP_0236 PF00467 KOW motif TP_0236 PF02357 Transcription termination factor nusG TP_0237 PF00298 Ribosomal protein L11, RNA binding domain TP_0237 PF03946 Ribosomal protein L11, N-terminal domain TP_0238 PF00687 Ribosomal protein L1p/L10e family TP_0239 PF00466 Ribosomal protein L10 TP_0240 PF00542 Ribosomal protein L7/L12 C-terminal domain TP_0240 PF16320 TP_0240 TP_0241 PF00562 RNA polymerase Rpb2, domain 6 TP_0241 PF04560 RNA polymerase Rpb2, domain 7 TP_0241 PF04561 RNA polymerase Rpb2, domain 2 TP_0241 PF04563 RNA polymerase beta subunit TP_0241 PF04565 RNA polymerase Rpb2, domain 3 TP_0241 PF10385 RNA polymerase beta subunit external 1 domain TP_0242 PF00623 RNA polymerase Rpb1, domain 2 TP_0242 PF04983 RNA polymerase Rpb1, domain 3 TP_0242 PF04997 RNA polymerase Rpb1, domain 1 TP_0242 PF04998 RNA polymerase Rpb1, domain 5 TP_0242 PF05000 RNA polymerase Rpb1, domain 4 TP_0243 PF00164 Ribosomal protein S12/S23 TP_0244 PF00177 Ribosomal protein S7p/S5e TP_0246 PF00092 von Willebrand factor type A domain TP_0247 PF01520 N-acetylmuramoyl-L-alanine amidase TP_0247 PF07833 Copper amine oxidase N-terminal domain TP_0249 PF04620 TP_0249 TP_0251 PF00216 Bacterial DNA-binding protein TP_0252 PF00795 Carbon-nitrogen hydrolase TP_0253 PF04519 TP_0253 TP_0254 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_0254 PF07497 Rho termination factor, RNA-binding domain TP_0254 PF07498 Rho termination factor, N-terminal domain TP_0255 PF01197 Ribosomal protein L31 TP_0256 PF01066 CDP-alcohol phosphatidyltransferase TP_0257 PF03009 Glycerophosphoryl diester phosphodiesterase family TP_0259 PF01476 LysM domain TP_0260 PF08239 Bacterial SH3 domain TP_0261 PF00027 Cyclic nucleotide-binding domain TP_0261 PF00515 Tetratricopeptide repeat TP_0261 PF13174 Tetratricopeptide repeat TP_0262 PF00027 Cyclic nucleotide-binding domain TP_0262 PF13545 Crp-like helix-turn-helix domain TP_0263 PF13385 Concanavalin A-like lectin/glucanases superfamily TP_0264 PF01791 DeoC/LacD family aldolase TP_0265 PF05525 TP_0265 TP_0267 PF04519 TP_0267 TP_0268 PF07719 Tetratricopeptide repeat TP_0268 PF13429 Tetratricopeptide repeat TP_0269 PF00919 Uncharacterized protein family UPF0004 TP_0269 PF04055 Radical SAM superfamily TP_0270 PF01743 Poly A polymerase head domain TP_0270 PF12627 Probable RNA and SrmB- binding site of polymerase A TP_0270 PF13735 tRNA nucleotidyltransferase domain 2 putative TP_0271 PF02195 ParB-like nuclease domain TP_0272 PF13614 AAA domain TP_0274 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TP_0275 PF03808 TP_0275 TP_0276 PF04452 RNA methyltransferase TP_0277 PF03572 Peptidase family S41 TP_0279 PF00575 S1 RNA binding domain TP_0279 PF02224 Cytidylate kinase TP_0283 PF01467 Cytidylyltransferase TP_0285 PF13186 Iron-sulfur cluster-binding domain TP_0288 PF02348 Cytidylyltransferase TP_0289 PF13489 Methyltransferase domain TP_0290 PF08282 haloacid dehalogenase-like hydrolase TP_0291 PF01070 FMN-dependent dehydrogenase TP_0292 PF00691 OmpA family TP_0294 PF00156 Phosphoribosyl transferase domain TP_0294 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TP_0295 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TP_0296 PF01121 Dephospho-CoA kinase TP_0297 PF05036 Sporulation related domain TP_0298 PF02608 Basic membrane protein TP_0300 PF00005 ABC transporter TP_0301 PF02653 TP_0301 TP_0302 PF02653 TP_0302 TP_0303 PF01119 DNA mismatch repair protein, C-terminal domain TP_0303 PF08676 MutL C terminal dimerisation domain TP_0303 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP_0305 PF00117 Glutamine amidotransferase class-I TP_0305 PF06418 CTP synthase N-terminus TP_0306 PF00163 Ribosomal protein S4/S9 N-terminal domain TP_0306 PF01479 S4 domain TP_0307 PF03793 PASTA domain TP_0308 PF00497 Bacterial extracellular solute-binding proteins, family 3 TP_0309 PF00497 Bacterial extracellular solute-binding proteins, family 3 TP_0310 PF00436 Single-strand binding protein family TP_0312 PF04018 TP_0312 TP_0313 PF02707 TP_0313 TP_0313 PF02722 TP_0313 TP_0314 PF10895 TP_0314 TP_0315 PF10895 TP_0315 TP_0317 PF02707 TP_0317 TP_0317 PF02722 TP_0317 TP_0319 PF02608 Basic membrane protein TP_0321 PF00005 ABC transporter TP_0322 PF02653 TP_0322 TP_0323 PF02653 TP_0323 TP_0325 PF04357 TP_0325 TP_0326 PF01103 Surface antigen TP_0326 PF07244 Surface antigen variable number repeat TP_0327 PF03938 Outer membrane protein (OmpH-like) TP_0328 PF00488 MutS domain V TP_0328 PF01624 MutS domain I TP_0328 PF05188 MutS domain II TP_0328 PF05190 MutS family domain IV TP_0328 PF05192 MutS domain III TP_0329 PF00464 Serine hydroxymethyltransferase TP_0330 PF00004 ATPase family associated with various cellular activities (AAA) TP_0331 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TP_0331 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TP_0333 PF03548 Outer membrane lipoprotein carrier protein LolA TP_0334 PF13413 Helix-turn-helix domain TP_0335 PF02517 CAAX protease self-immunity TP_0336 PF03772 TP_0336 TP_0337 PF00398 Ribosomal RNA adenine dimethylase TP_0339 PF00849 RNA pseudouridylate synthase TP_0340 PF02875 Mur ligase family, glutamate ligase domain TP_0340 PF08245 Mur ligase middle domain TP_0341 PF01225 Mur ligase family, catalytic domain TP_0341 PF02875 Mur ligase family, glutamate ligase domain TP_0341 PF08245 Mur ligase middle domain TP_0342 PF13189 Cytidylate kinase-like family TP_0343 PF00633 Helix-hairpin-helix motif TP_0343 PF00730 HhH-GPD superfamily base excision DNA repair protein TP_0344 PF00270 DEAD/DEAH box helicase TP_0344 PF00271 Helicase conserved C-terminal domain TP_0344 PF02559 CarD-like/TRCF domain TP_0344 PF03461 TRCF domain TP_0345 PF00953 Glycosyl transferase family 4 TP_0346 PF10895 TP_0346 TP_0347 PF10895 TP_0347 TP_0348 PF07456 TP_0348 TP_0349 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP_0350 PF00171 Aldehyde dehydrogenase family TP_0351 PF00696 Amino acid kinase family TP_0352 PF02229 Transcriptional Coactivator p15 (PC4) TP_0353 PF00075 RNase H TP_0354 PF02223 Thymidylate kinase TP_0356 PF00076 RNA recognition motif TP_0357 PF02237 Biotin protein ligase C terminal domain TP_0357 PF03099 Biotin/lipoate A/B protein ligase family TP_0358 PF03065 Glycosyl hydrolase family 57 TP_0358 PF09210 Domain of unknown function (DUF1957) TP_0359 PF16258 TP_0359 TP_0361 PF01553 Acyltransferase TP_0362 PF00830 Ribosomal L28 family TP_0363 PF01584 CheW-like domain TP_0363 PF01627 Hpt domain TP_0363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP_0363 PF02895 Signal transducing histidine kinase, homodimeric domain TP_0363 PF07194 P2 response regulator binding domain TP_0364 PF01584 CheW-like domain TP_0364 PF01739 CheR methyltransferase, SAM binding domain TP_0365 PF13690 Chemotaxis phosphatase CheX TP_0366 PF00072 Response regulator receiver domain TP_0367 PF02463 RecF/RecN/SMC N terminal domain TP_0369 PF13525 Outer membrane lipoprotein TP_0371 PF00288 GHMP kinases N terminal domain TP_0371 PF08544 GHMP kinases C terminal TP_0372 PF01386 Ribosomal L25p family TP_0372 PF14693 Ribosomal protein TL5, C-terminal domain TP_0373 PF01171 PP-loop family TP_0379 PF01043 SecA preprotein cross-linking domain TP_0379 PF02810 SEC-C motif TP_0379 PF07516 SecA Wing and Scaffold domain TP_0379 PF07517 SecA DEAD-like domain TP_0380 PF04851 Type III restriction enzyme, res subunit TP_0380 PF13625 TP_0380 TP_0380 PF16203 TP_0380 TP_0381 PF09529 TP_0381 TP_0383 PF02381 MraZ protein TP_0384 PF01795 MraW methylase family TP_0386 PF01225 Mur ligase family, catalytic domain TP_0386 PF02875 Mur ligase family, glutamate ligase domain TP_0386 PF08245 Mur ligase middle domain TP_0387 PF01098 TP_0387 TP_0388 PF08478 POTRA domain, FtsQ-type TP_0389 PF02491 SHS2 domain inserted in FTSA TP_0389 PF14450 Cell division protein FtsA TP_0390 PF00091 Tubulin/FtsZ family, GTPase domain TP_0390 PF12327 FtsZ family, C-terminal domain TP_0391 PF00589 Phage integrase family TP_0391 PF02899 Phage integrase, N-terminal SAM-like domain TP_0392 PF14559 Tetratricopeptide repeat TP_0393 PF02481 DNA recombination-mediator protein A TP_0394 PF01131 DNA topoisomerase TP_0394 PF01396 TP_0394 TP_0394 PF01751 Toprim domain TP_0395 PF00589 Phage integrase family TP_0395 PF02899 Phage integrase, N-terminal SAM-like domain TP_0396 PF00460 Flagella basal body rod protein TP_0397 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_0398 PF02049 TP_0398 TP_0399 PF01514 Secretory protein of YscJ/FliF family TP_0399 PF08345 TP_0399 TP_0400 PF01706 FliG C-terminal domain TP_0400 PF14841 FliG middle domain TP_0400 PF14842 FliG N-terminal domain TP_0401 PF02108 TP_0401 TP_0402 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_0402 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_0403 PF02050 Flagellar FliJ protein TP_0405 PF00805 Pentapeptide repeats (8 copies) TP_0405 PF13599 Pentapeptide repeats (9 copies) TP_0406 PF01177 Asp/Glu/Hydantoin racemase TP_0407 PF13419 Haloacid dehalogenase-like hydrolase TP_0410 PF02355 Protein export membrane protein TP_0411 PF02355 Protein export membrane protein TP_0412 PF11680 Protein of unknown function (DUF3276) TP_0413 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TP_0413 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TP_0414 PF01235 TP_0414 TP_0416 PF00448 SRP54-type protein, GTPase domain TP_0416 PF02881 SRP54-type protein, helical bundle domain TP_0416 PF02978 Signal peptide binding domain TP_0417 PF00795 Carbon-nitrogen hydrolase TP_0418 PF08544 GHMP kinases C terminal TP_0418 PF10509 Galactokinase galactose-binding signature TP_0419 PF01975 Survival protein SurE TP_0421 PF13414 TPR repeat TP_0426 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_0426 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_0426 PF16886 TP_0426 TP_0427 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_0427 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_0428 PF01813 ATP synthase subunit D TP_0430 PF00137 ATP synthase subunit C TP_0431 PF03309 Type III pantothenate kinase TP_0435 PF04170 NlpE N-terminal domain TP_0436 PF01368 DHH family TP_0436 PF02272 DHHA1 domain TP_0438 PF01725 Ham1 family TP_0439 PF01584 CheW-like domain TP_0440 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TP_0441 PF01513 ATP-NAD kinase TP_0442 PF02463 RecF/RecN/SMC N terminal domain TP_0444 PF01476 LysM domain TP_0444 PF01551 Peptidase family M23 TP_0445 PF01965 DJ-1/PfpI family TP_0446 PF04551 GcpE protein TP_0448 PF14681 Uracil phosphoribosyltransferase TP_0450 PF00009 Elongation factor Tu GTP binding domain TP_0450 PF00679 Elongation factor G C-terminus TP_0450 PF03144 Elongation factor Tu domain 2 TP_0450 PF03764 Elongation factor G, domain IV TP_0450 PF14492 Elongation Factor G, domain II TP_0452 PF00133 tRNA synthetases class I (I, L, M and V) TP_0452 PF08264 Anticodon-binding domain of tRNA TP_0458 PF04079 Putative transcriptional regulators (Ypuh-like) TP_0459 PF00849 RNA pseudouridylate synthase TP_0459 PF01479 S4 domain TP_0460 PF13181 Tetratricopeptide repeat TP_0464 PF02390 Putative methyltransferase TP_0468 PF13176 Tetratricopeptide repeat TP_0468 PF13432 Tetratricopeptide repeat TP_0468 PF14559 Tetratricopeptide repeat TP_0469 PF13432 Tetratricopeptide repeat TP_0470 PF00515 Tetratricopeptide repeat TP_0470 PF14559 Tetratricopeptide repeat TP_0471 PF04471 Restriction endonuclease TP_0471 PF13432 Tetratricopeptide repeat TP_0472 PF01541 GIY-YIG catalytic domain TP_0472 PF02151 UvrB/uvrC motif TP_0472 PF08459 UvrC Helix-hairpin-helix N-terminal TP_0474 PF01709 Transcriptional regulator TP_0475 PF00342 Phosphoglucose isomerase TP_0476 PF00871 Acetokinase family TP_0477 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TP_0478 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TP_0478 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TP_0479 PF10895 TP_0479 TP_0484 PF04773 FecR protein TP_0485 PF00211 Adenylate and Guanylate cyclase catalytic domain TP_0485 PF00672 HAMP domain TP_0486 PF05262 TP_0486 TP_0488 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP_0488 PF00672 HAMP domain TP_0488 PF02743 Cache domain TP_0489 PF12706 Beta-lactamase superfamily domain TP_0491 PF02618 YceG-like family TP_0492 PF01807 CHC2 zinc finger TP_0492 PF08275 DNA primase catalytic core, N-terminal domain TP_0492 PF13662 Toprim domain TP_0493 PF00140 Sigma-70 factor, region 1 TP_0493 PF03979 Sigma-70 factor, region 1 TP_0493 PF04539 Sigma-70 region 3 TP_0493 PF04542 Sigma-70 region 2 TP_0493 PF04545 Sigma-70, region 4 TP_0494 PF02591 Putative zinc ribbon domain TP_0497 PF06723 MreB/Mbl protein TP_0498 PF04085 rod shape-determining protein MreC TP_0499 PF04093 TP_0499 TP_0500 PF00905 Penicillin binding protein transpeptidase domain TP_0500 PF03717 Penicillin-binding Protein dimerisation domain TP_0501 PF01098 TP_0501 TP_0502 PF12796 Ankyrin repeats (3 copies) TP_0505 PF00349 Hexokinase TP_0505 PF03727 Hexokinase TP_0506 PF05697 Bacterial trigger factor protein (TF) TP_0506 PF05698 Bacterial trigger factor protein (TF) C-terminus TP_0507 PF00574 Clp protease TP_0508 PF06689 ClpX C4-type zinc finger TP_0508 PF07724 AAA domain (Cdc48 subfamily) TP_0508 PF10431 C-terminal, D2-small domain, of ClpB protein TP_0509 PF00578 AhpC/TSA family TP_0509 PF10417 C-terminal domain of 1-Cys peroxiredoxin TP_0510 PF00009 Elongation factor Tu GTP binding domain TP_0510 PF00679 Elongation factor G C-terminus TP_0510 PF03144 Elongation factor Tu domain 2 TP_0510 PF06421 GTP-binding protein LepA C-terminus TP_0510 PF14492 Elongation Factor G, domain II TP_0511 PF02559 CarD-like/TRCF domain TP_0512 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TP_0512 PF02542 YgbB family TP_0513 PF02080 TrkA-C domain TP_0513 PF02254 TrkA-N domain TP_0514 PF00005 ABC transporter TP_0515 PF04453 Organic solvent tolerance protein TP_0516 PF03023 TP_0516 TP_0517 PF02075 Crossover junction endodeoxyribonuclease RuvC TP_0518 PF04263 Thiamin pyrophosphokinase, catalytic domain TP_0519 PF00072 Response regulator receiver domain TP_0519 PF00158 Sigma-54 interaction domain TP_0519 PF02954 Bacterial regulatory protein, Fis family TP_0521 PF13177 DNA polymerase III, delta subunit TP_0522 PF02674 TP_0522 TP_0523 PF03033 Glycosyltransferase family 28 N-terminal domain TP_0523 PF04101 Glycosyltransferase family 28 C-terminal domain TP_0524 PF00004 ATPase family associated with various cellular activities (AAA) TP_0524 PF02190 ATP-dependent protease La (LON) domain TP_0524 PF05362 Lon protease (S16) C-terminal proteolytic domain TP_0525 PF01132 Elongation factor P (EF-P) OB domain TP_0525 PF08207 Elongation factor P (EF-P) KOW-like domain TP_0525 PF09285 Elongation factor P, C-terminal TP_0526 PF00270 DEAD/DEAH box helicase TP_0526 PF00271 Helicase conserved C-terminal domain TP_0526 PF04408 Helicase associated domain (HA2) TP_0526 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TP_0527 PF01813 ATP synthase subunit D TP_0528 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_0528 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_0529 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP_0529 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP_0529 PF16886 TP_0529 TP_0531 PF01990 ATP synthase (F/14-kDa) subunit TP_0533 PF01496 V-type ATPase 116kDa subunit family TP_0534 PF01992 ATP synthase (C/AC39) subunit TP_0536 PF03840 Preprotein translocase SecG subunit TP_0537 PF00121 Triosephosphate isomerase TP_0538 PF00162 Phosphoglycerate kinase TP_0540 PF01740 STAS domain TP_0541 PF01926 50S ribosome-binding GTPase TP_0541 PF07650 KH domain TP_0542 PF00365 Phosphofructokinase TP_0543 PF01330 RuvA N terminal domain TP_0543 PF14520 Helix-hairpin-helix domain TP_0544 PF03372 Endonuclease/Exonuclease/phosphatase family TP_0545 PF13407 Periplasmic binding protein domain TP_0546 PF13365 Trypsin-like peptidase domain TP_0547 PF02401 LytB protein TP_0548 PF03687 TP_0548 TP_0549 PF00004 ATPase family associated with various cellular activities (AAA) TP_0549 PF02861 Clp amino terminal domain TP_0549 PF07724 AAA domain (Cdc48 subfamily) TP_0549 PF10431 C-terminal, D2-small domain, of ClpB protein TP_0550 PF01926 50S ribosome-binding GTPase TP_0550 PF10396 GTP-binding protein TrmE N-terminus TP_0550 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE TP_0551 PF01569 PAP2 superfamily TP_0553 PF01594 TP_0553 TP_0554 PF13419 Haloacid dehalogenase-like hydrolase TP_0555 PF00375 Sodium:dicarboxylate symporter family TP_0556 PF03590 Aspartate-ammonia ligase TP_0557 PF06226 TP_0557 TP_0558 PF03824 TP_0558 TP_0559 PF02568 Thiamine biosynthesis protein (ThiI) TP_0559 PF02926 THUMP domain TP_0560 PF00456 Transketolase, thiamine diphosphate binding domain TP_0560 PF02779 Transketolase, pyrimidine binding domain TP_0561 PF04536 TLP18 TP_0562 PF03102 NeuB family TP_0562 PF08666 SAF domain TP_0565 PF04311 TP_0565 TP_0566 PF03062 TP_0566 TP_0568 PF01081 KDPG and KHG aldolase TP_0569 PF00557 Metallopeptidase family M24 TP_0569 PF01321 Creatinase/Prolidase N-terminal domain TP_0569 PF16188 TP_0569 TP_0569 PF16189 TP_0569 TP_0571 PF04011 LemA family TP_0572 PF01794 TP_0572 TP_0572 PF04205 FMN-binding domain TP_0574 PF14888 Penicillin-binding protein Tp47 domain C TP_0574 PF14889 Penicillin-binding protein Tp47 domain a TP_0576 PF00472 RF-1 domain TP_0576 PF03462 PCRF domain TP_0578 PF00448 SRP54-type protein, GTPase domain TP_0578 PF02881 SRP54-type protein, helical bundle domain TP_0580 PF02687 TP_0580 TP_0580 PF12704 MacB-like periplasmic core domain TP_0581 PF00005 ABC transporter TP_0582 PF02687 TP_0582 TP_0582 PF12704 MacB-like periplasmic core domain TP_0585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TP_0586 PF08264 Anticodon-binding domain of tRNA TP_0586 PF09334 tRNA synthetases class I (M) TP_0586 PF13603 Leucyl-tRNA synthetase, Domain 2 TP_0588 PF06144 DNA polymerase III, delta subunit TP_0589 PF00381 PTS HPr component phosphorylation site TP_0591 PF02603 HPr Serine kinase N terminus TP_0591 PF07475 HPr Serine kinase C-terminal domain TP_0592 PF13539 D-alanyl-D-alanine carboxypeptidase TP_0594 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) TP_0595 PF00406 Adenylate kinase TP_0595 PF05191 Adenylate kinase, active site lid TP_0596 PF01743 Poly A polymerase head domain TP_0596 PF12627 Probable RNA and SrmB- binding site of polymerase A TP_0599 PF14353 TP_0599 TP_0600 PF02163 Peptidase family M50 TP_0600 PF13180 PDZ domain TP_0601 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TP_0601 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal TP_0601 PF13288 DXP reductoisomerase C-terminal domain TP_0602 PF01148 Cytidylyltransferase family TP_0603 PF01255 Putative undecaprenyl diphosphate synthase TP_0604 PF01765 Ribosome recycling factor TP_0605 PF00889 Elongation factor TS TP_0606 PF00318 Ribosomal protein S2 TP_0608 PF13646 HEAT repeats TP_0609 PF00152 tRNA synthetases class II (D, K and N) TP_0609 PF01336 OB-fold nucleic acid binding domain TP_0610 PF02707 TP_0610 TP_0610 PF02722 TP_0610 TP_0611 PF00005 ABC transporter TP_0612 PF01458 Uncharacterized protein family (UPF0051) TP_0613 PF01458 Uncharacterized protein family (UPF0051) TP_0614 PF00266 Aminotransferase class-V TP_0615 PF01592 NifU-like N terminal domain TP_0616 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TP_0617 PF10895 TP_0617 TP_0618 PF10895 TP_0618 TP_0619 PF10895 TP_0619 TP_0620 PF02707 TP_0620 TP_0620 PF02722 TP_0620 TP_0621 PF02707 TP_0621 TP_0621 PF02722 TP_0621 TP_0622 PF13432 Tetratricopeptide repeat TP_0623 PF01464 Transglycosylase SLT domain TP_0623 PF01476 LysM domain TP_0624 PF00691 OmpA family TP_0626 PF00149 Calcineurin-like phosphoesterase TP_0627 PF13476 AAA domain TP_0627 PF13558 Putative exonuclease SbcCD, C subunit TP_0628 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TP_0630 PF01739 CheR methyltransferase, SAM binding domain TP_0630 PF03705 CheR methyltransferase, all-alpha domain TP_0631 PF00072 Response regulator receiver domain TP_0631 PF01339 CheB methylesterase TP_0632 PF00579 tRNA synthetases class I (W and Y) TP_0633 PF01625 Peptide methionine sulfoxide reductase TP_0633 PF01641 SelR domain TP_0634 PF00533 BRCA1 C Terminus (BRCT) domain TP_0634 PF01653 NAD-dependent DNA ligase adenylation domain TP_0634 PF03120 NAD-dependent DNA ligase OB-fold domain TP_0634 PF12826 Helix-hairpin-helix motif TP_0636 PF02565 Recombination protein O C terminal TP_0637 PF01715 IPP transferase TP_0639 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP_0640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP_0641 PF13393 Histidyl-tRNA synthetase TP_0642 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TP_0642 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TP_0642 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TP_0642 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TP_0643 PF00929 Exonuclease TP_0644 PF01921 tRNA synthetases class I (K) TP_0647 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP_0647 PF02403 Seryl-tRNA synthetase N-terminal domain TP_0648 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 TP_0648 PF13432 Tetratricopeptide repeat TP_0648 PF14559 Tetratricopeptide repeat TP_0649 PF00571 CBS domain TP_0649 PF03471 Transporter associated domain TP_0650 PF02130 Uncharacterized protein family UPF0054 TP_0651 PF01966 HD domain TP_0651 PF07697 TP_0651 TP_0651 PF07698 TP_0651 TP_0652 PF00005 ABC transporter TP_0652 PF08402 TOBE domain TP_0653 PF00528 Binding-protein-dependent transport system inner membrane component TP_0654 PF00528 Binding-protein-dependent transport system inner membrane component TP_0655 PF13416 Bacterial extracellular solute-binding protein TP_0657 PF02599 Global regulator protein family TP_0658 PF02623 FliW protein TP_0659 PF00669 Bacterial flagellin N-terminal helical region TP_0659 PF07196 Flagellin hook IN motif TP_0660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_0660 PF07196 Flagellin hook IN motif TP_0662 PF01116 Fructose-bisphosphate aldolase class-II TP_0663 PF04620 TP_0663 TP_0664 PF04620 TP_0664 TP_0667 PF00485 Phosphoribulokinase / Uridine kinase family TP_0668 PF02325 TP_0668 TP_0669 PF02811 PHP domain TP_0669 PF07733 Bacterial DNA polymerase III alpha subunit TP_0669 PF14579 Helix-hairpin-helix motif TP_0670 PF01820 D-ala D-ala ligase N-terminus TP_0670 PF07478 D-ala D-ala ligase C-terminus TP_0671 PF01066 CDP-alcohol phosphatidyltransferase TP_0672 PF03129 Anticodon binding domain TP_0673 PF00749 tRNA synthetases class I (E and Q), catalytic domain TP_0674 PF01713 Smr domain TP_0675 PF01963 TP_0675 TP_0680 PF00814 Glycoprotease family TP_0681 PF00842 Alanine racemase, C-terminal domain TP_0681 PF01168 Alanine racemase, N-terminal domain TP_0682 PF01728 FtsJ-like methyltransferase TP_0683 PF00348 Polyprenyl synthetase TP_0684 PF13407 Periplasmic binding protein domain TP_0685 PF00005 ABC transporter TP_0686 PF02653 TP_0686 TP_0687 PF00270 DEAD/DEAH box helicase TP_0687 PF00271 Helicase conserved C-terminal domain TP_0687 PF17191 TP_0687 TP_0688 PF02016 LD-carboxypeptidase TP_0689 PF01926 50S ribosome-binding GTPase TP_0689 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TP_0691 PF02616 ScpA/B protein TP_0692 PF00154 recA bacterial DNA recombination protein TP_0694 PF01812 5-formyltetrahydrofolate cyclo-ligase family TP_0695 PF13535 ATP-grasp domain TP_0697 PF10895 TP_0697 TP_0698 PF10895 TP_0698 TP_0701 PF01192 RNA polymerase Rpb6 TP_0702 PF01551 Peptidase family M23 TP_0704 PF01368 DHH family TP_0704 PF02272 DHHA1 domain TP_0705 PF00905 Penicillin binding protein transpeptidase domain TP_0705 PF00912 Transglycosylase TP_0706 PF01476 LysM domain TP_0706 PF01551 Peptidase family M23 TP_0709 PF04539 Sigma-70 region 3 TP_0709 PF04542 Sigma-70 region 2 TP_0709 PF04545 Sigma-70, region 4 TP_0710 PF03961 TP_0710 TP_0710 PF14804 Jag N-terminus TP_0712 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TP_0713 PF00448 SRP54-type protein, GTPase domain TP_0714 PF00771 FHIPEP family TP_0715 PF01312 FlhB HrpN YscU SpaS Family TP_0716 PF01311 TP_0716 TP_0717 PF01313 TP_0717 TP_0718 PF00813 TP_0718 TP_0719 PF04347 TP_0719 TP_0720 PF01052 Surface presentation of antigens (SPOA) TP_0721 PF01052 Surface presentation of antigens (SPOA) TP_0721 PF02154 Flagellar motor switch protein FliM TP_0722 PF03748 TP_0722 TP_0724 PF00691 OmpA family TP_0724 PF13677 TP_0724 TP_0725 PF01618 TP_0725 TP_0726 PF06289 TP_0726 TP_0727 PF00460 Flagella basal body rod protein TP_0727 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_0727 PF07559 Flagellar basal body protein FlaE TP_0728 PF03963 TP_0728 TP_0729 PF02120 Flagellar hook-length control protein FliK TP_0730 PF01066 CDP-alcohol phosphatidyltransferase TP_0731 PF00293 NUDIX domain TP_0732 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TP_0732 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TP_0733 PF13505 Outer membrane protein beta-barrel domain TP_0734 PF01048 Phosphorylase superfamily TP_0735 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP_0735 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TP_0736 PF00175 Oxidoreductase NAD-binding domain TP_0736 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TP_0737 PF01547 Bacterial extracellular solute-binding protein TP_0738 PF02410 Oligomerisation domain TP_0739 PF03816 Cell envelope-related transcriptional attenuator domain TP_0739 PF13399 LytR cell envelope-related transcriptional attenuator TP_0740 PF01966 HD domain TP_0741 PF01467 Cytidylyltransferase TP_0742 PF01018 GTP1/OBG TP_0742 PF01926 50S ribosome-binding GTPase TP_0743 PF01016 Ribosomal L27 protein TP_0744 PF04327 Protein of unknown function (DUF464) TP_0745 PF00829 Ribosomal prokaryotic L21 protein TP_0746 PF00391 PEP-utilising enzyme, mobile domain TP_0746 PF02896 PEP-utilising enzyme, TIM barrel domain TP_0750 PF13519 von Willebrand factor type A domain TP_0754 PF00919 Uncharacterized protein family UPF0004 TP_0754 PF01938 TRAM domain TP_0754 PF04055 Radical SAM superfamily TP_0755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TP_0756 PF00551 Formyl transferase TP_0756 PF02911 Formyl transferase, C-terminal domain TP_0757 PF01327 Polypeptide deformylase TP_0758 PF01165 Ribosomal protein S21 TP_0760 PF00905 Penicillin binding protein transpeptidase domain TP_0760 PF03717 Penicillin-binding Protein dimerisation domain TP_0760 PF03793 PASTA domain TP_0762 PF01973 TP_0762 TP_0764 PF01966 HD domain TP_0765 PF00004 ATPase family associated with various cellular activities (AAA) TP_0765 PF01434 Peptidase family M41 TP_0767 PF00009 Elongation factor Tu GTP binding domain TP_0767 PF00679 Elongation factor G C-terminus TP_0767 PF03144 Elongation factor Tu domain 2 TP_0767 PF03764 Elongation factor G, domain IV TP_0767 PF14492 Elongation Factor G, domain II TP_0770 PF00270 DEAD/DEAH box helicase TP_0770 PF00271 Helicase conserved C-terminal domain TP_0770 PF03880 DbpA RNA binding domain TP_0771 PF01895 PhoU domain TP_0771 PF02690 TP_0771 TP_0773 PF13180 PDZ domain TP_0773 PF13365 Trypsin-like peptidase domain TP_0774 PF02308 TP_0774 TP_0775 PF00730 HhH-GPD superfamily base excision DNA repair protein TP_0778 PF03819 MazG nucleotide pyrophosphohydrolase domain TP_0779 PF09335 TP_0779 TP_0780 PF02540 NAD synthase TP_0785 PF03968 OstA-like protein TP_0786 PF00005 ABC transporter TP_0786 PF12399 Branched-chain amino acid ATP-binding cassette transporter TP_0789 PF17131 TP_0789 TP_0790 PF03176 MMPL family TP_0792 PF00669 Bacterial flagellin N-terminal helical region TP_0792 PF00700 Bacterial flagellin C-terminal helical region TP_0794 PF00438 S-adenosylmethionine synthetase, N-terminal domain TP_0794 PF02772 S-adenosylmethionine synthetase, central domain TP_0794 PF02773 S-adenosylmethionine synthetase, C-terminal domain TP_0796 PF02424 ApbE family TP_0797 PF03807 NADP oxidoreductase coenzyme F420-dependent TP_0797 PF14748 Pyrroline-5-carboxylate reductase dimerisation TP_0798 PF01588 Putative tRNA binding domain TP_0798 PF09334 tRNA synthetases class I (M) TP_0800 PF00768 D-alanyl-D-alanine carboxypeptidase TP_0801 PF00004 ATPase family associated with various cellular activities (AAA) TP_0801 PF02861 Clp amino terminal domain TP_0801 PF07724 AAA domain (Cdc48 subfamily) TP_0801 PF10431 C-terminal, D2-small domain, of ClpB protein TP_0803 PF01368 DHH family TP_0804 PF00005 ABC transporter TP_0805 PF00773 RNB domain TP_0806 PF02388 FemAB family TP_0807 PF01783 Ribosomal L32p protein family TP_0808 PF00550 Phosphopantetheine attachment site TP_0809 PF00035 Double-stranded RNA binding motif TP_0809 PF14622 Ribonuclease-III-like TP_0810 PF02086 D12 class N6 adenine-specific DNA methyltransferase TP_0814 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP_0815 PF08445 FR47-like protein TP_0817 PF00113 Enolase, C-terminal TIM barrel domain TP_0817 PF03952 Enolase, N-terminal domain TP_0819 PF00753 Metallo-beta-lactamase superfamily TP_0819 PF12706 Beta-lactamase superfamily domain TP_0820 PF13432 Tetratricopeptide repeat TP_0821 PF03180 NLPA lipoprotein TP_0822 PF00924 Mechanosensitive ion channel TP_0823 PF01880 Desulfoferrodoxin TP_0824 PF02779 Transketolase, pyrimidine binding domain TP_0824 PF02780 Transketolase, C-terminal domain TP_0824 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TP_0826 PF02457 DisA bacterial checkpoint controller nucleotide-binding TP_0827 PF07949 YbbR-like protein TP_0828 PF01648 4'-phosphopantetheinyl transferase superfamily TP_0829 PF09986 TP_0829 TP_0830 PF01416 tRNA pseudouridine synthase TP_0831 PF00750 tRNA synthetases class I (R) TP_0831 PF03485 Arginyl tRNA synthetase N terminal domain TP_0831 PF05746 DALR anticodon binding domain TP_0832 PF10646 TP_0832 TP_0834 PF00579 tRNA synthetases class I (W and Y) TP_0835 PF00023 Ankyrin repeat TP_0835 PF12796 Ankyrin repeats (3 copies) TP_0837 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP_0837 PF03129 Anticodon binding domain TP_0837 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TP_0838 PF00005 ABC transporter TP_0838 PF12848 ABC transporter TP_0841 PF13180 PDZ domain TP_0841 PF13365 Trypsin-like peptidase domain TP_0842 PF00557 Metallopeptidase family M24 TP_0843 PF00226 DnaJ domain TP_0844 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TP_0844 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TP_0845 PF02639 TP_0845 TP_0846 PF05164 Cell division protein ZapA TP_0848 PF00453 Ribosomal protein L20 TP_0849 PF01632 Ribosomal protein L35 TP_0850 PF00707 Translation initiation factor IF-3, C-terminal domain TP_0850 PF05198 Translation initiation factor IF-3, N-terminal domain TP_0851 PF16314 TP_0851 TP_0852 PF01790 TP_0852 TP_0853 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TP_0854 PF00672 HAMP domain TP_0854 PF07228 Stage II sporulation protein E (SpoIIE) TP_0856 PF03687 TP_0856 TP_0858 PF03687 TP_0858 TP_0859 PF03687 TP_0859 TP_0860 PF03687 TP_0860 TP_0861 PF01380 SIS domain TP_0861 PF13522 Glutamine amidotransferase domain TP_0862 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP_0862 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TP_0863 PF00266 Aminotransferase class-V TP_0864 PF01476 LysM domain TP_0864 PF01551 Peptidase family M23 TP_0865 PF03687 TP_0865 TP_0868 PF00669 Bacterial flagellin N-terminal helical region TP_0868 PF00700 Bacterial flagellin C-terminal helical region TP_0870 PF00669 Bacterial flagellin N-terminal helical region TP_0870 PF00700 Bacterial flagellin C-terminal helical region TP_0872 PF02465 TP_0872 TP_0872 PF07195 TP_0872 TP_0875 PF02367 Uncharacterised P-loop hydrolase UPF0079 TP_0876 PF00814 Glycoprotease family TP_0877 PF01966 HD domain TP_0878 PF14238 TP_0878 TP_0879 PF09822 TP_0879 TP_0881 PF00005 ABC transporter TP_0882 PF13646 HEAT repeats TP_0883 PF03739 TP_0883 TP_0884 PF03739 TP_0884 TP_0885 PF00692 dUTPase TP_0886 PF00013 KH domain TP_0886 PF00575 S1 RNA binding domain TP_0886 PF01138 3' exoribonuclease family, domain 1 TP_0886 PF03725 3' exoribonuclease family, domain 2 TP_0886 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TP_0887 PF00312 Ribosomal protein S15 TP_0888 PF06574 FAD synthetase TP_0889 PF01509 TruB family pseudouridylate synthase (N terminal domain) TP_0889 PF16198 TP_0889 TP_0890 PF02033 Ribosome-binding factor A TP_0891 PF00009 Elongation factor Tu GTP binding domain TP_0891 PF04760 Translation initiation factor IF-2, N-terminal region TP_0891 PF11987 Translation-initiation factor 2 TP_0892 PF08529 NusA N-terminal domain TP_0892 PF13184 NusA-like KH domain TP_0893 PF02576 Uncharacterised BCR, YhbC family COG0779 TP_0893 PF17384 TP_0893 TP_0894 PF01936 NYN domain TP_0894 PF12872 OST-HTH/LOTUS domain TP_0895 PF03625 Domain of unknown function DUF302 TP_0897 PF02707 TP_0897 TP_0897 PF02722 TP_0897 TP_0898 PF00580 UvrD/REP helicase N-terminal domain TP_0898 PF13361 UvrD-like helicase C-terminal domain TP_0899 PF12705 PD-(D/E)XK nuclease superfamily TP_0900 PF12705 PD-(D/E)XK nuclease superfamily TP_0901 PF01554 MatE TP_0902 PF12697 Alpha/beta hydrolase family TP_0903 PF02875 Mur ligase family, glutamate ligase domain TP_0903 PF08245 Mur ligase middle domain TP_0905 PF00886 Ribosomal protein S16 TP_0906 PF13083 KH domain TP_0907 PF01782 RimM N-terminal domain TP_0908 PF01746 tRNA (Guanine-1)-methyltransferase TP_0909 PF01245 Ribosomal protein L19 TP_0911 PF01312 FlhB HrpN YscU SpaS Family TP_0912 PF01966 HD domain TP_0912 PF11871 TP_0912 TP_0913 PF02021 Uncharacterised protein family UPF0102 TP_0915 PF04471 Restriction endonuclease TP_0915 PF14559 Tetratricopeptide repeat TP_0917 PF00571 CBS domain TP_0917 PF01769 Divalent cation transporter TP_0917 PF03448 MgtE intracellular N domain TP_0919 PF00085 Thioredoxin TP_0920 PF13432 Tetratricopeptide repeat TP_0921 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TP_0921 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP_0923 PF08308 TP_0923 TP_0924 PF00575 S1 RNA binding domain TP_0924 PF09371 Tex-like protein N-terminal domain TP_0924 PF12836 Helix-hairpin-helix motif TP_0924 PF16921 TP_0924 TP_0925 PF00258 Flavodoxin TP_0926 PF00717 Peptidase S24-like TP_0930 PF01973 TP_0930 TP_0931 PF01204 Trehalase TP_0933 PF01225 Mur ligase family, catalytic domain TP_0933 PF02875 Mur ligase family, glutamate ligase domain TP_0933 PF08245 Mur ligase middle domain TP_0934 PF00375 Sodium:dicarboxylate symporter family TP_0935 PF07859 alpha/beta hydrolase fold TP_0936 PF03471 Transporter associated domain TP_0937 PF12850 Calcineurin-like phosphoesterase superfamily domain TP_0939 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TP_0939 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TP_0939 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TP_0939 PF10371 Domain of unknown function TP_0939 PF12838 4Fe-4S dicluster domain TP_0939 PF17147 TP_0939 TP_0943 PF02561 Flagellar protein FliS TP_0945 PF00834 Ribulose-phosphate 3 epimerase family TP_0946 PF02527 rRNA small subunit methyltransferase G TP_0947 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TP_0948 PF01424 R3H domain TP_0948 PF13083 KH domain TP_0948 PF14804 Jag N-terminus TP_0949 PF02096 60Kd inner membrane protein TP_0949 PF14849 YidC periplasmic domain TP_0951 PF00468 Ribosomal protein L34 TP_0952 PF12740 Chlorophyllase enzyme TP_0953 PF01963 TP_0953 TP_0954 PF13176 Tetratricopeptide repeat TP_0954 PF13432 Tetratricopeptide repeat TP_0956 PF16811 TP_0956 TP_0957 PF03480 Bacterial extracellular solute-binding protein, family 7 TP_0958 PF04290 TP_0958 TP_0958 PF06808 TP_0958 TP_0959 PF10135 TP_0959 TP_0960 PF00460 Flagella basal body rod protein TP_0960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_0961 PF00460 Flagella basal body rod protein TP_0961 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP_0962 PF02687 TP_0962 TP_0962 PF12704 MacB-like periplasmic core domain TP_0963 PF02687 TP_0963 TP_0963 PF12704 MacB-like periplasmic core domain TP_0964 PF00005 ABC transporter TP_0965 PF16576 TP_0965 TP_0971 PF10634 Fe2+ transport protein TP_0972 PF03239 TP_0972 TP_0973 PF01409 tRNA synthetases class II core domain (F) TP_0975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_0977 PF01784 NIF3 (NGG1p interacting factor 3) TP_0978 PF01252 TP_0978 TP_0979 PF01026 TatD related DNase TP_0980 PF01207 Dihydrouridine synthase (Dus) TP_0981 PF00990 GGDEF domain TP_0982 PF01694 Rhomboid family TP_0984 PF00183 Hsp90 protein TP_0984 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP_0985 PF00152 tRNA synthetases class II (D, K and N) TP_0985 PF01336 OB-fold nucleic acid binding domain TP_0985 PF02938 GAD domain TP_0986 PF00892 EamA-like transporter family TP_0988 PF01914 TP_0988 TP_0989 PF16561 TP_0989 TP_0990 PF13174 Tetratricopeptide repeat TP_0990 PF13432 Tetratricopeptide repeat TP_0991 PF00301 Rubredoxin TP_0993 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel TP_0994 PF01026 TatD related DNase TP_0995 PF00027 Cyclic nucleotide-binding domain TP_0995 PF13581 Histidine kinase-like ATPase domain TP_0997 PF01343 Peptidase family S49 TP_0998 PF01235 TP_0998 TP_0999 PF01580 FtsK/SpoIIIE family TP_0999 PF09397 Ftsk gamma domain TP_1002 PF10016 TP_1002 TP_1004 PF13662 Toprim domain TP_1005 PF12169 DNA polymerase III subunits gamma and tau domain III TP_1005 PF13177 DNA polymerase III, delta subunit TP_1006 PF00204 DNA gyrase B TP_1006 PF00986 DNA gyrase B subunit, carboxyl terminus TP_1006 PF01751 Toprim domain TP_1006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP_1007 PF02511 Thymidylate synthase complementing protein TP_1008 PF00317 Ribonucleotide reductase, all-alpha domain TP_1008 PF02867 Ribonucleotide reductase, barrel domain TP_1008 PF03477 ATP cone domain TP_1009 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TP_1009 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TP_1010 PF00334 Nucleoside diphosphate kinase TP_1011 PF01195 Peptidyl-tRNA hydrolase TP_1012 PF04542 Sigma-70 region 2 TP_1012 PF04545 Sigma-70, region 4 TP_1013 PF00166 Chaperonin 10 Kd subunit TP_1015 PF01029 NusB family TP_1016 PF13145 PPIC-type PPIASE domain TP_1016 PF13623 TP_1016 TP_1017 PF01411 tRNA synthetases class II (A) TP_1017 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TP_1018 PF00013 KH domain TP_1018 PF01966 HD domain TP_1018 PF12072 TP_1018 TP_1020 PF01425 Amidase TP_1021 PF02637 GatB domain TP_1021 PF02934 GatB/GatE catalytic domain TP_1022 PF06745 KaiC TP_1022 PF13541 Subunit ChlI of Mg-chelatase TP_1023 PF02631 RecX family TP_1024 PF00380 Ribosomal protein S9/S16 TP_1025 PF00572 Ribosomal protein L13 TP_1026 PF01432 Peptidase family M3 TP_1027 PF01048 Phosphorylase superfamily TP_1028 PF00580 UvrD/REP helicase N-terminal domain TP_1028 PF13361 UvrD-like helicase C-terminal domain TP_1029 PF03880 DbpA RNA binding domain TP_1031 PF02707 TP_1031 TP_1031 PF02722 TP_1031 TP_1032 PF07009 Protein of unknown function (DUF1312) TP_1033 PF01734 Patatin-like phospholipase TP_1034 PF01699 Sodium/calcium exchanger protein TP_1035 PF00133 tRNA synthetases class I (I, L, M and V) TP_1035 PF08264 Anticodon-binding domain of tRNA TP_1035 PF10458 Valyl tRNA synthetase tRNA binding arm TP_1036 PF00122 E1-E2 ATPase TP_1036 PF00403 Heavy-metal-associated domain TP_1036 PF00702 haloacid dehalogenase-like hydrolase TP_1037 PF03006 TP_1037 TP_1038 PF00210 Ferritin-like domain TP_1039 PF00156 Phosphoribosyl transferase domain TP_1040 PF00152 tRNA synthetases class II (D, K and N) TP_1041 PF00574 Clp protease