locus-tag class description HRQ91_00005 PF00308 Bacterial dnaA protein HRQ91_00005 PF08299 Bacterial dnaA protein helix-turn-helix HRQ91_00005 PF11638 DnaA N-terminal domain HRQ91_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HRQ91_00010 PF02767 DNA polymerase III beta subunit, central domain HRQ91_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HRQ91_00015 PF02463 RecF/RecN/SMC N terminal domain HRQ91_00020 PF05258 Dna[CI] antecedent, DciA HRQ91_00025 PF00468 Ribosomal protein L34 HRQ91_00030 PF00825 Ribonuclease P HRQ91_00035 PF01809 Putative membrane protein insertion efficiency factor HRQ91_00040 PF02096 60Kd inner membrane protein HRQ91_00040 PF14849 YidC periplasmic domain HRQ91_00045 PF14804 Jag N-terminus HRQ91_00045 PF01424 R3H domain HRQ91_00055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HRQ91_00080 PF13614 AAA domain HRQ91_00085 PF17762 HTH domain found in ParB protein HRQ91_00085 PF02195 ParB-like nuclease domain HRQ91_00090 PF02146 Sir2 family HRQ91_00095 PF07702 UTRA domain HRQ91_00095 PF00392 Bacterial regulatory proteins, gntR family HRQ91_00110 PF00465 Iron-containing alcohol dehydrogenase HRQ91_00120 PF00005 ABC transporter HRQ91_00125 PF02653 Branched-chain amino acid transport system / permease component HRQ91_00130 PF02653 Branched-chain amino acid transport system / permease component HRQ91_00140 PF00294 pfkB family carbohydrate kinase HRQ91_00165 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_00165 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_00175 PF08125 Mannitol dehydrogenase C-terminal domain HRQ91_00175 PF01232 Mannitol dehydrogenase Rossmann domain HRQ91_00185 PF10396 GTP-binding protein TrmE N-terminus HRQ91_00185 PF01926 50S ribosome-binding GTPase HRQ91_00185 PF12631 MnmE helical domain HRQ91_00220 PF00248 Aldo/keto reductase family HRQ91_00225 PF08668 HDOD domain HRQ91_00230 PF00588 SpoU rRNA Methylase family HRQ91_00245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRQ91_00250 PF00849 RNA pseudouridylate synthase HRQ91_00265 PF01595 Cyclin M transmembrane N-terminal domain HRQ91_00265 PF03471 Transporter associated domain HRQ91_00265 PF00571 CBS domain HRQ91_00270 PF00571 CBS domain HRQ91_00270 PF01595 Cyclin M transmembrane N-terminal domain HRQ91_00270 PF03471 Transporter associated domain HRQ91_00280 PF00586 AIR synthase related protein, N-terminal domain HRQ91_00280 PF02769 AIR synthase related protein, C-terminal domain HRQ91_00280 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HRQ91_00290 PF00005 ABC transporter HRQ91_00290 PF08402 TOBE domain HRQ91_00295 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_00300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRQ91_00300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRQ91_00300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRQ91_00300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRQ91_00305 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HRQ91_00305 PF01502 Phosphoribosyl-AMP cyclohydrolase HRQ91_00310 PF00815 Histidinol dehydrogenase HRQ91_00315 PF01327 Polypeptide deformylase HRQ91_00320 PF02911 Formyl transferase, C-terminal domain HRQ91_00320 PF00551 Formyl transferase HRQ91_00325 PF03793 PASTA domain HRQ91_00340 PF00291 Pyridoxal-phosphate dependent enzyme HRQ91_00340 PF14821 Threonine synthase N terminus HRQ91_00350 PF02446 4-alpha-glucanotransferase HRQ91_00365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRQ91_00365 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRQ91_00380 PF02629 CoA binding domain HRQ91_00380 PF06971 Putative DNA-binding protein N-terminus HRQ91_00385 PF00266 Aminotransferase class-V HRQ91_00390 PF01842 ACT domain HRQ91_00390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HRQ91_00390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HRQ91_00410 PF13286 Phosphohydrolase-associated domain HRQ91_00410 PF01966 HD domain HRQ91_00425 PF18125 RlmM ferredoxin-like domain HRQ91_00425 PF01728 FtsJ-like methyltransferase HRQ91_00435 PF04011 LemA family HRQ91_00445 PF04536 TPM domain HRQ91_00450 PF00962 Adenosine/AMP deaminase HRQ91_00455 PF08439 Oligopeptidase F HRQ91_00455 PF01432 Peptidase family M3 HRQ91_00460 PF08239 Bacterial SH3 domain HRQ91_00465 PF00005 ABC transporter HRQ91_00465 PF12848 ABC transporter HRQ91_00465 PF16326 ABC transporter C-terminal domain HRQ91_00470 PF16363 GDP-mannose 4,6 dehydratase HRQ91_00475 PF01546 Peptidase family M20/M25/M40 HRQ91_00475 PF07687 Peptidase dimerisation domain HRQ91_00485 PF00953 Glycosyl transferase family 4 HRQ91_00490 PF01808 AICARFT/IMPCHase bienzyme HRQ91_00490 PF02142 MGS-like domain HRQ91_00500 PF01047 MarR family HRQ91_00510 PF01555 DNA methylase HRQ91_00515 PF03553 Na+/H+ antiporter family HRQ91_00545 PF08241 Methyltransferase domain HRQ91_00550 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_00555 PF00933 Glycosyl hydrolase family 3 N terminal domain HRQ91_00565 PF00085 Thioredoxin HRQ91_00575 PF01554 MatE HRQ91_00605 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_00610 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_00615 PF03466 LysR substrate binding domain HRQ91_00615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRQ91_00630 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HRQ91_00630 PF02896 PEP-utilising enzyme, TIM barrel domain HRQ91_00630 PF00391 PEP-utilising enzyme, mobile domain HRQ91_00635 PF08032 RNA 2'-O ribose methyltransferase substrate binding HRQ91_00635 PF00588 SpoU rRNA Methylase family HRQ91_00640 PF12850 Calcineurin-like phosphoesterase superfamily domain HRQ91_00650 PF01784 NIF3 (NGG1p interacting factor 3) HRQ91_00655 PF01252 Signal peptidase (SPase) II HRQ91_00670 PF02237 Biotin protein ligase C terminal domain HRQ91_00670 PF03099 Biotin/lipoate A/B protein ligase family HRQ91_00670 PF08279 HTH domain HRQ91_00675 PF01048 Phosphorylase superfamily HRQ91_00680 PF07883 Cupin domain HRQ91_00700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRQ91_00705 PF01106 NifU-like domain HRQ91_00725 PF13091 PLD-like domain HRQ91_00765 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HRQ91_00765 PF01871 AMMECR1 HRQ91_00775 PF00005 ABC transporter HRQ91_00780 PF00654 Voltage gated chloride channel HRQ91_00795 PF05167 Uncharacterised ACR (DUF711) HRQ91_00800 PF01554 MatE HRQ91_00805 PF00563 EAL domain HRQ91_00805 PF00990 Diguanylate cyclase, GGDEF domain HRQ91_00805 PF03707 Bacterial signalling protein N terminal repeat HRQ91_00815 PF03807 NADP oxidoreductase coenzyme F420-dependent HRQ91_00815 PF14748 Pyrroline-5-carboxylate reductase dimerisation HRQ91_00820 PF00696 Amino acid kinase family HRQ91_00825 PF00171 Aldehyde dehydrogenase family HRQ91_00845 PF01479 S4 domain HRQ91_00845 PF00849 RNA pseudouridylate synthase HRQ91_00855 PF00011 Hsp20/alpha crystallin family HRQ91_00865 PF02511 Thymidylate synthase complementing protein HRQ91_00880 PF10996 Beta-Casp domain HRQ91_00880 PF00753 Metallo-beta-lactamase superfamily HRQ91_00880 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HRQ91_00885 PF00475 Imidazoleglycerol-phosphate dehydratase HRQ91_00890 PF02446 4-alpha-glucanotransferase HRQ91_00900 PF00873 AcrB/AcrD/AcrF family HRQ91_00905 PF13533 Biotin-lipoyl like HRQ91_00915 PF13291 ACT domain HRQ91_00915 PF04607 Region found in RelA / SpoT proteins HRQ91_00915 PF02824 TGS domain HRQ91_00920 PF01136 Peptidase family U32 HRQ91_00920 PF16325 Peptidase family U32 C-terminal domain HRQ91_00925 PF07859 alpha/beta hydrolase fold HRQ91_00930 PF04204 Homoserine O-succinyltransferase HRQ91_00935 PF17827 PrmC N-terminal domain HRQ91_00935 PF05175 Methyltransferase small domain HRQ91_00940 PF03462 PCRF domain HRQ91_00940 PF00472 RF-1 domain HRQ91_00945 PF13932 GidA associated domain HRQ91_00945 PF01134 Glucose inhibited division protein A HRQ91_00950 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HRQ91_00950 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HRQ91_00950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRQ91_00950 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HRQ91_00950 PF10371 Domain of unknown function HRQ91_00955 PF00480 ROK family HRQ91_00970 PF01970 Tripartite tricarboxylate transporter TctA family HRQ91_00985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRQ91_00985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRQ91_01000 PF01970 Tripartite tricarboxylate transporter TctA family HRQ91_01005 PF00884 Sulfatase HRQ91_01010 PF00392 Bacterial regulatory proteins, gntR family HRQ91_01010 PF07702 UTRA domain HRQ91_01015 PF00890 FAD binding domain HRQ91_01015 PF02910 Fumarate reductase flavoprotein C-term HRQ91_01025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HRQ91_01030 PF07883 Cupin domain HRQ91_01035 PF00005 ABC transporter HRQ91_01040 PF12399 Branched-chain amino acid ATP-binding cassette transporter HRQ91_01040 PF00005 ABC transporter HRQ91_01045 PF02653 Branched-chain amino acid transport system / permease component HRQ91_01045 PF11862 Domain of unknown function (DUF3382) HRQ91_01050 PF02653 Branched-chain amino acid transport system / permease component HRQ91_01055 PF13458 Periplasmic binding protein HRQ91_01075 PF01970 Tripartite tricarboxylate transporter TctA family HRQ91_01080 PF00884 Sulfatase HRQ91_01085 PF01741 Large-conductance mechanosensitive channel, MscL HRQ91_01090 PF00294 pfkB family carbohydrate kinase HRQ91_01100 PF13685 Iron-containing alcohol dehydrogenase HRQ91_01110 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_01115 PF00005 ABC transporter HRQ91_01115 PF08402 TOBE domain HRQ91_01125 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HRQ91_01145 PF04237 YjbR HRQ91_01150 PF01032 FecCD transport family HRQ91_01155 PF00005 ABC transporter HRQ91_01175 PF03851 UV-endonuclease UvdE HRQ91_01195 PF00005 ABC transporter HRQ91_01195 PF00664 ABC transporter transmembrane region HRQ91_01200 PF00005 ABC transporter HRQ91_01200 PF00664 ABC transporter transmembrane region HRQ91_01200 PF08021 Siderophore-interacting FAD-binding domain HRQ91_01200 PF04954 Siderophore-interacting protein HRQ91_01210 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_01215 PF00005 ABC transporter HRQ91_01230 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HRQ91_01250 PF00872 Transposase, Mutator family HRQ91_01280 PF03575 Peptidase family S51 HRQ91_01310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRQ91_01315 PF01232 Mannitol dehydrogenase Rossmann domain HRQ91_01315 PF08125 Mannitol dehydrogenase C-terminal domain HRQ91_01320 PF00392 Bacterial regulatory proteins, gntR family HRQ91_01320 PF07729 FCD domain HRQ91_01325 PF13411 MerR HTH family regulatory protein HRQ91_01330 PF01966 HD domain HRQ91_01335 PF01145 SPFH domain / Band 7 family HRQ91_01350 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_01350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRQ91_01360 PF02743 Cache domain HRQ91_01360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_01360 PF00672 HAMP domain HRQ91_01370 PF04073 Aminoacyl-tRNA editing domain HRQ91_01385 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HRQ91_01385 PF00056 lactate/malate dehydrogenase, NAD binding domain HRQ91_01395 PF00356 Bacterial regulatory proteins, lacI family HRQ91_01415 PF00365 Phosphofructokinase HRQ91_01425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_01425 PF02743 Cache domain HRQ91_01425 PF00672 HAMP domain HRQ91_01430 PF02503 Polyphosphate kinase middle domain HRQ91_01430 PF13090 Polyphosphate kinase C-terminal domain 2 HRQ91_01430 PF13089 Polyphosphate kinase N-terminal domain HRQ91_01430 PF17941 Polyphosphate kinase C-terminal domain 1 HRQ91_01435 PF02541 Ppx/GppA phosphatase family HRQ91_01440 PF01204 Trehalase HRQ91_01460 PF06745 KaiC HRQ91_01460 PF18073 Rubredoxin metal binding domain HRQ91_01470 PF00132 Bacterial transferase hexapeptide (six repeats) HRQ91_01480 PF00211 Adenylate and Guanylate cyclase catalytic domain HRQ91_01480 PF00672 HAMP domain HRQ91_01480 PF02743 Cache domain HRQ91_01505 PF00471 Ribosomal protein L33 HRQ91_01515 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HRQ91_01520 PF00467 KOW motif HRQ91_01520 PF02357 Transcription termination factor nusG HRQ91_01525 PF00298 Ribosomal protein L11, RNA binding domain HRQ91_01525 PF03946 Ribosomal protein L11, N-terminal domain HRQ91_01530 PF00687 Ribosomal protein L1p/L10e family HRQ91_01535 PF00466 Ribosomal protein L10 HRQ91_01540 PF00542 Ribosomal protein L7/L12 C-terminal domain HRQ91_01540 PF16320 Ribosomal protein L7/L12 dimerisation domain HRQ91_01545 PF04561 RNA polymerase Rpb2, domain 2 HRQ91_01545 PF04560 RNA polymerase Rpb2, domain 7 HRQ91_01545 PF00562 RNA polymerase Rpb2, domain 6 HRQ91_01545 PF10385 RNA polymerase beta subunit external 1 domain HRQ91_01545 PF04563 RNA polymerase beta subunit HRQ91_01545 PF04565 RNA polymerase Rpb2, domain 3 HRQ91_01550 PF04998 RNA polymerase Rpb1, domain 5 HRQ91_01550 PF04997 RNA polymerase Rpb1, domain 1 HRQ91_01550 PF00623 RNA polymerase Rpb1, domain 2 HRQ91_01550 PF04983 RNA polymerase Rpb1, domain 3 HRQ91_01550 PF05000 RNA polymerase Rpb1, domain 4 HRQ91_01555 PF00164 Ribosomal protein S12/S23 HRQ91_01560 PF00177 Ribosomal protein S7p/S5e HRQ91_01565 PF03144 Elongation factor Tu domain 2 HRQ91_01565 PF00009 Elongation factor Tu GTP binding domain HRQ91_01565 PF03143 Elongation factor Tu C-terminal domain HRQ91_01570 PF00338 Ribosomal protein S10p/S20e HRQ91_01575 PF00297 Ribosomal protein L3 HRQ91_01580 PF00573 Ribosomal protein L4/L1 family HRQ91_01585 PF00276 Ribosomal protein L23 HRQ91_01590 PF00181 Ribosomal Proteins L2, RNA binding domain HRQ91_01590 PF03947 Ribosomal Proteins L2, C-terminal domain HRQ91_01595 PF00203 Ribosomal protein S19 HRQ91_01600 PF00237 Ribosomal protein L22p/L17e HRQ91_01605 PF07650 KH domain HRQ91_01605 PF00189 Ribosomal protein S3, C-terminal domain HRQ91_01610 PF00252 Ribosomal protein L16p/L10e HRQ91_01615 PF00831 Ribosomal L29 protein HRQ91_01620 PF00366 Ribosomal protein S17 HRQ91_01625 PF00238 Ribosomal protein L14p/L23e HRQ91_01630 PF00467 KOW motif HRQ91_01630 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HRQ91_01635 PF00281 Ribosomal protein L5 HRQ91_01635 PF00673 ribosomal L5P family C-terminus HRQ91_01640 PF00253 Ribosomal protein S14p/S29e HRQ91_01645 PF00410 Ribosomal protein S8 HRQ91_01650 PF00347 Ribosomal protein L6 HRQ91_01655 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HRQ91_01660 PF00333 Ribosomal protein S5, N-terminal domain HRQ91_01660 PF03719 Ribosomal protein S5, C-terminal domain HRQ91_01665 PF00327 Ribosomal protein L30p/L7e HRQ91_01670 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HRQ91_01675 PF00344 SecY translocase HRQ91_01680 PF00444 Ribosomal protein L36 HRQ91_01685 PF00416 Ribosomal protein S13/S18 HRQ91_01690 PF00411 Ribosomal protein S11 HRQ91_01695 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HRQ91_01695 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HRQ91_01695 PF01000 RNA polymerase Rpb3/RpoA insert domain HRQ91_01700 PF01196 Ribosomal protein L17 HRQ91_01715 PF02653 Branched-chain amino acid transport system / permease component HRQ91_01720 PF11862 Domain of unknown function (DUF3382) HRQ91_01720 PF02653 Branched-chain amino acid transport system / permease component HRQ91_01725 PF00005 ABC transporter HRQ91_01725 PF12399 Branched-chain amino acid ATP-binding cassette transporter HRQ91_01730 PF00005 ABC transporter HRQ91_01735 PF00571 CBS domain HRQ91_01745 PF02779 Transketolase, pyrimidine binding domain HRQ91_01745 PF00456 Transketolase, thiamine diphosphate binding domain HRQ91_01750 PF01790 Prolipoprotein diacylglyceryl transferase HRQ91_01755 PF10609 NUBPL iron-transfer P-loop NTPase HRQ91_01760 PF03572 Peptidase family S41 HRQ91_01760 PF13180 PDZ domain HRQ91_01775 PF01590 GAF domain HRQ91_01775 PF02954 Bacterial regulatory protein, Fis family HRQ91_01775 PF00158 Sigma-54 interaction domain HRQ91_01790 PF05785 Rho-activating domain of cytotoxic necrotizing factor HRQ91_01790 PF18807 Tripartite Tc toxins repeat HRQ91_01805 PF00872 Transposase, Mutator family HRQ91_01840 PF07650 KH domain HRQ91_01840 PF01926 50S ribosome-binding GTPase HRQ91_01845 PF07687 Peptidase dimerisation domain HRQ91_01845 PF01546 Peptidase family M20/M25/M40 HRQ91_01850 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HRQ91_01880 PF00588 SpoU rRNA Methylase family HRQ91_01885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HRQ91_01885 PF00128 Alpha amylase, catalytic domain HRQ91_01890 PF00343 Carbohydrate phosphorylase HRQ91_01915 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRQ91_01920 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_01925 PF00005 ABC transporter HRQ91_01930 PF01740 STAS domain HRQ91_01930 PF00916 Sulfate permease family HRQ91_01940 PF01554 MatE HRQ91_01945 PF00392 Bacterial regulatory proteins, gntR family HRQ91_01945 PF07729 FCD domain HRQ91_01955 PF00456 Transketolase, thiamine diphosphate binding domain HRQ91_01960 PF02780 Transketolase, C-terminal domain HRQ91_01960 PF02779 Transketolase, pyrimidine binding domain HRQ91_01970 PF12848 ABC transporter HRQ91_01970 PF16326 ABC transporter C-terminal domain HRQ91_01970 PF00005 ABC transporter HRQ91_01975 PF02558 Ketopantoate reductase PanE/ApbA HRQ91_01975 PF08546 Ketopantoate reductase PanE/ApbA C terminal HRQ91_01980 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HRQ91_01980 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HRQ91_01995 PF01053 Cys/Met metabolism PLP-dependent enzyme HRQ91_02005 PF00171 Aldehyde dehydrogenase family HRQ91_02005 PF00465 Iron-containing alcohol dehydrogenase HRQ91_02020 PF00698 Acyl transferase domain HRQ91_02030 PF02801 Beta-ketoacyl synthase, C-terminal domain HRQ91_02030 PF00109 Beta-ketoacyl synthase, N-terminal domain HRQ91_02035 PF07977 FabA-like domain HRQ91_02045 PF00027 Cyclic nucleotide-binding domain HRQ91_02045 PF13302 Acetyltransferase (GNAT) domain HRQ91_02050 PF02811 PHP domain HRQ91_02055 PF01078 Magnesium chelatase, subunit ChlI HRQ91_02055 PF13335 Magnesium chelatase, subunit ChlI C-terminal HRQ91_02065 PF09028 Mac 1 HRQ91_02080 PF00309 Sigma-54 factor, Activator interacting domain (AID) HRQ91_02080 PF04963 Sigma-54 factor, core binding domain HRQ91_02080 PF04552 Sigma-54, DNA binding domain HRQ91_02090 PF07475 HPr Serine kinase C-terminal domain HRQ91_02090 PF02603 HPr Serine kinase N terminus HRQ91_02095 PF00381 PTS HPr component phosphorylation site HRQ91_02100 PF01726 LexA DNA binding domain HRQ91_02100 PF00717 Peptidase S24-like HRQ91_02110 PF02229 Transcriptional Coactivator p15 (PC4) HRQ91_02125 PF00293 NUDIX domain HRQ91_02135 PF01066 CDP-alcohol phosphatidyltransferase HRQ91_02160 PF01734 Patatin-like phospholipase HRQ91_02170 PF00291 Pyridoxal-phosphate dependent enzyme HRQ91_02175 PF10397 Adenylosuccinate lyase C-terminus HRQ91_02175 PF00206 Lyase HRQ91_02180 PF07729 FCD domain HRQ91_02180 PF00392 Bacterial regulatory proteins, gntR family HRQ91_02185 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_02185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HRQ91_02195 PF02653 Branched-chain amino acid transport system / permease component HRQ91_02200 PF11862 Domain of unknown function (DUF3382) HRQ91_02200 PF02653 Branched-chain amino acid transport system / permease component HRQ91_02205 PF12399 Branched-chain amino acid ATP-binding cassette transporter HRQ91_02205 PF00005 ABC transporter HRQ91_02210 PF00005 ABC transporter HRQ91_02220 PF01546 Peptidase family M20/M25/M40 HRQ91_02225 PF03313 Serine dehydratase alpha chain HRQ91_02235 PF00210 Ferritin-like domain HRQ91_02250 PF00266 Aminotransferase class-V HRQ91_02255 PF02657 Fe-S metabolism associated domain HRQ91_02270 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_02280 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_02280 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_02290 PF00107 Zinc-binding dehydrogenase HRQ91_02290 PF08240 Alcohol dehydrogenase GroES-like domain HRQ91_02305 PF01850 PIN domain HRQ91_02310 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HRQ91_02320 PF01435 Peptidase family M48 HRQ91_02325 PF00211 Adenylate and Guanylate cyclase catalytic domain HRQ91_02330 PF12833 Helix-turn-helix domain HRQ91_02340 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_02345 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_02355 PF02690 Na+/Pi-cotransporter HRQ91_02370 PF00753 Metallo-beta-lactamase superfamily HRQ91_02375 PF03880 DbpA RNA binding domain HRQ91_02385 PF00574 Clp protease HRQ91_02390 PF02677 Epoxyqueuosine reductase QueH HRQ91_02405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HRQ91_02405 PF03819 MazG nucleotide pyrophosphohydrolase domain HRQ91_02410 PF01195 Peptidyl-tRNA hydrolase HRQ91_02415 PF00403 Heavy-metal-associated domain HRQ91_02420 PF01022 Bacterial regulatory protein, arsR family HRQ91_02440 PF00005 ABC transporter HRQ91_02445 PF12728 Helix-turn-helix domain HRQ91_02445 PF02661 Fic/DOC family HRQ91_02455 PF00581 Rhodanese-like domain HRQ91_02460 PF01814 Hemerythrin HHE cation binding domain HRQ91_02465 PF03537 Glycoside-hydrolase family GH114 HRQ91_02475 PF00118 TCP-1/cpn60 chaperonin family HRQ91_02480 PF13419 Haloacid dehalogenase-like hydrolase HRQ91_02485 PF05175 Methyltransferase small domain HRQ91_02490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HRQ91_02490 PF13378 Enolase C-terminal domain-like HRQ91_02495 PF00455 DeoR C terminal sensor domain HRQ91_02495 PF08220 DeoR-like helix-turn-helix domain HRQ91_02500 PF01541 GIY-YIG catalytic domain HRQ91_02500 PF02151 UvrB/uvrC motif HRQ91_02500 PF08459 UvrC Helix-hairpin-helix N-terminal HRQ91_02515 PF01321 Creatinase/Prolidase N-terminal domain HRQ91_02515 PF00557 Metallopeptidase family M24 HRQ91_02520 PF03023 Lipid II flippase MurJ HRQ91_02525 PF03781 Sulfatase-modifying factor enzyme 1 HRQ91_02530 PF03781 Sulfatase-modifying factor enzyme 1 HRQ91_02550 PF01869 BadF/BadG/BcrA/BcrD ATPase family HRQ91_02570 PF01618 MotA/TolQ/ExbB proton channel family HRQ91_02575 PF02472 Biopolymer transport protein ExbD/TolR HRQ91_02605 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HRQ91_02605 PF02542 YgbB family HRQ91_02615 PF00691 OmpA family HRQ91_02630 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_02635 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_02640 PF00005 ABC transporter HRQ91_02640 PF08402 TOBE domain HRQ91_02650 PF03591 AzlC protein HRQ91_02660 PF00572 Ribosomal protein L13 HRQ91_02665 PF00380 Ribosomal protein S9/S16 HRQ91_02675 PF00072 Response regulator receiver domain HRQ91_02675 PF00990 Diguanylate cyclase, GGDEF domain HRQ91_02680 PF01343 Peptidase family S49 HRQ91_02695 PF01207 Dihydrouridine synthase (Dus) HRQ91_02700 PF02581 Thiamine monophosphate synthase HRQ91_02710 PF10609 NUBPL iron-transfer P-loop NTPase HRQ91_02725 PF01966 HD domain HRQ91_02725 PF00013 KH domain HRQ91_02725 PF12072 Domain of unknown function (DUF3552) HRQ91_02730 PF00005 ABC transporter HRQ91_02730 PF12399 Branched-chain amino acid ATP-binding cassette transporter HRQ91_02745 PF00117 Glutamine amidotransferase class-I HRQ91_02745 PF06418 CTP synthase N-terminus HRQ91_02750 PF01739 CheR methyltransferase, SAM binding domain HRQ91_02750 PF03705 CheR methyltransferase, all-alpha domain HRQ91_02755 PF01339 CheB methylesterase HRQ91_02755 PF00072 Response regulator receiver domain HRQ91_02770 PF00348 Polyprenyl synthetase HRQ91_02775 PF01728 FtsJ-like methyltransferase HRQ91_02780 PF01551 Peptidase family M23 HRQ91_02790 PF04542 Sigma-70 region 2 HRQ91_02790 PF08281 Sigma-70, region 4 HRQ91_02810 PF16360 GTP-binding GTPase Middle Region HRQ91_02810 PF01926 50S ribosome-binding GTPase HRQ91_02810 PF13167 GTP-binding GTPase N-terminal HRQ91_02830 PF09383 NIL domain HRQ91_02830 PF00005 ABC transporter HRQ91_02835 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_02845 PF04060 Putative Fe-S cluster HRQ91_02850 PF02508 Rnf-Nqr subunit, membrane protein HRQ91_02855 PF02508 Rnf-Nqr subunit, membrane protein HRQ91_02865 PF03116 NQR2, RnfD, RnfE family HRQ91_02870 PF13375 RnfC Barrel sandwich hybrid domain HRQ91_02870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HRQ91_02870 PF13237 4Fe-4S dicluster domain HRQ91_02870 PF10531 SLBB domain HRQ91_02900 PF03747 ADP-ribosylglycohydrolase HRQ91_02915 PF13635 Domain of unknown function (DUF4143) HRQ91_02915 PF13173 AAA domain HRQ91_02920 PF02028 BCCT, betaine/carnitine/choline family transporter HRQ91_02940 PF01812 5-formyltetrahydrofolate cyclo-ligase family HRQ91_02950 PF16314 Domain of unknown function (DUF4954) HRQ91_02955 PF00563 EAL domain HRQ91_02955 PF01590 GAF domain HRQ91_02955 PF00990 Diguanylate cyclase, GGDEF domain HRQ91_02955 PF00360 Phytochrome region HRQ91_02960 PF02699 Preprotein translocase subunit HRQ91_02965 PF02355 Protein export membrane protein HRQ91_02970 PF02355 Protein export membrane protein HRQ91_02975 PF08240 Alcohol dehydrogenase GroES-like domain HRQ91_02975 PF00107 Zinc-binding dehydrogenase HRQ91_02980 PF08240 Alcohol dehydrogenase GroES-like domain HRQ91_02980 PF00107 Zinc-binding dehydrogenase HRQ91_02985 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_02990 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_02990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_02995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_03000 PF02401 LytB protein HRQ91_03005 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HRQ91_03005 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HRQ91_03010 PF02978 Signal peptide binding domain HRQ91_03010 PF00448 SRP54-type protein, GTPase domain HRQ91_03010 PF02881 SRP54-type protein, helical bundle domain HRQ91_03050 PF01136 Peptidase family U32 HRQ91_03050 PF12392 Collagenase HRQ91_03065 PF00155 Aminotransferase class I and II HRQ91_03070 PF03781 Sulfatase-modifying factor enzyme 1 HRQ91_03085 PF02595 Glycerate kinase family HRQ91_03090 PF01039 Carboxyl transferase domain HRQ91_03100 PF01145 SPFH domain / Band 7 family HRQ91_03105 PF01145 SPFH domain / Band 7 family HRQ91_03110 PF00472 RF-1 domain HRQ91_03110 PF03462 PCRF domain HRQ91_03120 PF02492 CobW/HypB/UreG, nucleotide-binding domain HRQ91_03120 PF07683 Cobalamin synthesis protein cobW C-terminal domain HRQ91_03135 PF00764 Arginosuccinate synthase HRQ91_03140 PF00293 NUDIX domain HRQ91_03140 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HRQ91_03140 PF09297 NADH pyrophosphatase zinc ribbon domain HRQ91_03145 PF00004 ATPase family associated with various cellular activities (AAA) HRQ91_03145 PF16193 AAA C-terminal domain HRQ91_03145 PF12002 MgsA AAA+ ATPase C terminal HRQ91_03155 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRQ91_03155 PF02774 Semialdehyde dehydrogenase, dimerisation domain HRQ91_03160 PF00672 HAMP domain HRQ91_03160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_03160 PF02743 Cache domain HRQ91_03170 PF02653 Branched-chain amino acid transport system / permease component HRQ91_03175 PF00005 ABC transporter HRQ91_03180 PF03129 Anticodon binding domain HRQ91_03180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRQ91_03200 PF00905 Penicillin binding protein transpeptidase domain HRQ91_03200 PF03793 PASTA domain HRQ91_03200 PF03717 Penicillin-binding Protein dimerisation domain HRQ91_03205 PF10502 Signal peptidase, peptidase S26 HRQ91_03210 PF01551 Peptidase family M23 HRQ91_03225 PF07943 Penicillin-binding protein 5, C-terminal domain HRQ91_03225 PF00768 D-alanyl-D-alanine carboxypeptidase HRQ91_03230 PF00860 Permease family HRQ91_03235 PF01116 Fructose-bisphosphate aldolase class-II HRQ91_03255 PF01026 TatD related DNase HRQ91_03260 PF01316 Arginine repressor, DNA binding domain HRQ91_03260 PF02863 Arginine repressor, C-terminal domain HRQ91_03265 PF00488 MutS domain V HRQ91_03265 PF01713 Smr domain HRQ91_03270 PF03193 RsgA GTPase HRQ91_03275 PF03030 Inorganic H+ pyrophosphatase HRQ91_03280 PF00575 S1 RNA binding domain HRQ91_03290 PF03781 Sulfatase-modifying factor enzyme 1 HRQ91_03305 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_03315 PF00005 ABC transporter HRQ91_03315 PF00571 CBS domain HRQ91_03320 PF00403 Heavy-metal-associated domain HRQ91_03325 PF02583 Metal-sensitive transcriptional repressor HRQ91_03340 PF00749 tRNA synthetases class I (E and Q), catalytic domain HRQ91_03355 PF01921 tRNA synthetases class I (K) HRQ91_03370 PF00005 ABC transporter HRQ91_03375 PF02608 ABC transporter substrate-binding protein PnrA-like HRQ91_03380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HRQ91_03395 PF01121 Dephospho-CoA kinase HRQ91_03400 PF01367 5'-3' exonuclease, C-terminal SAM fold HRQ91_03400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HRQ91_03400 PF00476 DNA polymerase family A HRQ91_03400 PF01612 3'-5' exonuclease HRQ91_03405 PF13344 Haloacid dehalogenase-like hydrolase HRQ91_03435 PF17862 AAA+ lid domain HRQ91_03435 PF01434 Peptidase family M41 HRQ91_03435 PF00004 ATPase family associated with various cellular activities (AAA) HRQ91_03440 PF00682 HMGL-like HRQ91_03440 PF08502 LeuA allosteric (dimerisation) domain HRQ91_03445 PF00578 AhpC/TSA family HRQ91_03450 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_03455 PF00672 HAMP domain HRQ91_03455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_03455 PF02743 Cache domain HRQ91_03490 PF00682 HMGL-like HRQ91_03490 PF08502 LeuA allosteric (dimerisation) domain HRQ91_03495 PF00180 Isocitrate/isopropylmalate dehydrogenase HRQ91_03500 PF00294 pfkB family carbohydrate kinase HRQ91_03510 PF00294 pfkB family carbohydrate kinase HRQ91_03525 PF03471 Transporter associated domain HRQ91_03525 PF00999 Sodium/hydrogen exchanger family HRQ91_03525 PF02080 TrkA-C domain HRQ91_03535 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HRQ91_03540 PF13378 Enolase C-terminal domain-like HRQ91_03540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HRQ91_03545 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_03555 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_03560 PF13407 Periplasmic binding protein domain HRQ91_03565 PF00005 ABC transporter HRQ91_03570 PF02653 Branched-chain amino acid transport system / permease component HRQ91_03575 PF02653 Branched-chain amino acid transport system / permease component HRQ91_03615 PF00933 Glycosyl hydrolase family 3 N terminal domain HRQ91_03635 PF08402 TOBE domain HRQ91_03635 PF00005 ABC transporter HRQ91_03645 PF01547 Bacterial extracellular solute-binding protein HRQ91_03660 PF03963 Flagellar hook capping protein - N-terminal region HRQ91_03665 PF07559 Flagellar basal body protein FlaE HRQ91_03665 PF00460 Flagella basal body rod protein HRQ91_03665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRQ91_03675 PF10672 S-adenosylmethionine-dependent methyltransferase HRQ91_03675 PF17785 PUA-like domain HRQ91_03705 PF07516 SecA Wing and Scaffold domain HRQ91_03705 PF01043 SecA preprotein cross-linking domain HRQ91_03705 PF02810 SEC-C motif HRQ91_03705 PF07517 SecA DEAD-like domain HRQ91_03725 PF00293 NUDIX domain HRQ91_03735 PF03180 NLPA lipoprotein HRQ91_03745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRQ91_03745 PF05524 PEP-utilising enzyme, N-terminal HRQ91_03745 PF00391 PEP-utilising enzyme, mobile domain HRQ91_03745 PF02896 PEP-utilising enzyme, TIM barrel domain HRQ91_03745 PF00381 PTS HPr component phosphorylation site HRQ91_03755 PF00849 RNA pseudouridylate synthase HRQ91_03755 PF01479 S4 domain HRQ91_03760 PF01381 Helix-turn-helix HRQ91_03775 PF02576 RimP N-terminal domain HRQ91_03775 PF17384 RimP C-terminal SH3 domain HRQ91_03780 PF13184 NusA-like KH domain HRQ91_03780 PF08529 NusA N-terminal domain HRQ91_03780 PF00575 S1 RNA binding domain HRQ91_03785 PF04760 Translation initiation factor IF-2, N-terminal region HRQ91_03785 PF11987 Translation-initiation factor 2 HRQ91_03785 PF00009 Elongation factor Tu GTP binding domain HRQ91_03790 PF02033 Ribosome-binding factor A HRQ91_03795 PF01509 TruB family pseudouridylate synthase (N terminal domain) HRQ91_03800 PF06574 FAD synthetase HRQ91_03800 PF01687 Riboflavin kinase HRQ91_03805 PF00312 Ribosomal protein S15 HRQ91_03810 PF00013 KH domain HRQ91_03810 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HRQ91_03810 PF01138 3' exoribonuclease family, domain 1 HRQ91_03810 PF03725 3' exoribonuclease family, domain 2 HRQ91_03810 PF00575 S1 RNA binding domain HRQ91_03815 PF00692 dUTPase HRQ91_03830 PF01702 Queuine tRNA-ribosyltransferase HRQ91_03840 PF04408 Helicase associated domain (HA2) HRQ91_03840 PF00271 Helicase conserved C-terminal domain HRQ91_03840 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HRQ91_03840 PF00270 DEAD/DEAH box helicase HRQ91_03845 PF01515 Phosphate acetyl/butaryl transferase HRQ91_03885 PF04055 Radical SAM superfamily HRQ91_03885 PF00919 Uncharacterized protein family UPF0004 HRQ91_03900 PF01081 KDPG and KHG aldolase HRQ91_03905 PF06733 DEAD_2 HRQ91_03905 PF13307 Helicase C-terminal domain HRQ91_03920 PF00005 ABC transporter HRQ91_03920 PF08402 TOBE domain HRQ91_03925 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_03930 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_03935 PF01547 Bacterial extracellular solute-binding protein HRQ91_03945 PF01649 Ribosomal protein S20 HRQ91_03950 PF00216 Bacterial DNA-binding protein HRQ91_03955 PF00795 Carbon-nitrogen hydrolase HRQ91_03965 PF07497 Rho termination factor, RNA-binding domain HRQ91_03965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRQ91_03965 PF07498 Rho termination factor, N-terminal domain HRQ91_03970 PF00356 Bacterial regulatory proteins, lacI family HRQ91_03980 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_04010 PF00005 ABC transporter HRQ91_04020 PF01197 Ribosomal protein L31 HRQ91_04030 PF10672 S-adenosylmethionine-dependent methyltransferase HRQ91_04035 PF00271 Helicase conserved C-terminal domain HRQ91_04035 PF00270 DEAD/DEAH box helicase HRQ91_04040 PF00005 ABC transporter HRQ91_04040 PF12848 ABC transporter HRQ91_04045 PF13361 UvrD-like helicase C-terminal domain HRQ91_04045 PF00580 UvrD/REP helicase N-terminal domain HRQ91_04060 PF02743 Cache domain HRQ91_04060 PF00672 HAMP domain HRQ91_04060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_04070 PF00266 Aminotransferase class-V HRQ91_04075 PF01761 3-dehydroquinate synthase HRQ91_04085 PF02223 Thymidylate kinase HRQ91_04095 PF01103 Surface antigen HRQ91_04095 PF07244 Surface antigen variable number repeat HRQ91_04105 PF05192 MutS domain III HRQ91_04105 PF05188 MutS domain II HRQ91_04105 PF00488 MutS domain V HRQ91_04105 PF01624 MutS domain I HRQ91_04105 PF05190 MutS family domain IV HRQ91_04110 PF00156 Phosphoribosyl transferase domain HRQ91_04115 PF01584 CheW-like domain HRQ91_04125 PF01513 ATP-NAD kinase HRQ91_04130 PF02463 RecF/RecN/SMC N terminal domain HRQ91_04140 PF02608 ABC transporter substrate-binding protein PnrA-like HRQ91_04145 PF00005 ABC transporter HRQ91_04150 PF02653 Branched-chain amino acid transport system / permease component HRQ91_04155 PF02653 Branched-chain amino acid transport system / permease component HRQ91_04165 PF05257 CHAP domain HRQ91_04165 PF01476 LysM domain HRQ91_04170 PF00929 Exonuclease HRQ91_04175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRQ91_04175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRQ91_04175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRQ91_04175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRQ91_04180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRQ91_04180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRQ91_04180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRQ91_04180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRQ91_04200 PF02381 MraZ protein, putative antitoxin-like HRQ91_04205 PF01795 MraW methylase family HRQ91_04215 PF01225 Mur ligase family, catalytic domain HRQ91_04215 PF02875 Mur ligase family, glutamate ligase domain HRQ91_04215 PF08245 Mur ligase middle domain HRQ91_04220 PF01098 Cell cycle protein HRQ91_04230 PF02491 SHS2 domain inserted in FTSA HRQ91_04235 PF00091 Tubulin/FtsZ family, GTPase domain HRQ91_04235 PF12327 FtsZ family, C-terminal domain HRQ91_04240 PF02899 Phage integrase, N-terminal SAM-like domain HRQ91_04240 PF00589 Phage integrase family HRQ91_04250 PF02481 DNA recombination-mediator protein A HRQ91_04250 PF17782 DprA winged helix domain HRQ91_04255 PF01131 DNA topoisomerase HRQ91_04255 PF01751 Toprim domain HRQ91_04255 PF01396 Topoisomerase DNA binding C4 zinc finger HRQ91_04260 PF02899 Phage integrase, N-terminal SAM-like domain HRQ91_04260 PF00589 Phage integrase family HRQ91_04265 PF00227 Proteasome subunit HRQ91_04270 PF00004 ATPase family associated with various cellular activities (AAA) HRQ91_04270 PF07724 AAA domain (Cdc48 subfamily) HRQ91_04280 PF00460 Flagella basal body rod protein HRQ91_04280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRQ91_04285 PF02049 Flagellar hook-basal body complex protein FliE HRQ91_04290 PF01970 Tripartite tricarboxylate transporter TctA family HRQ91_04305 PF01761 3-dehydroquinate synthase HRQ91_04305 PF02541 Ppx/GppA phosphatase family HRQ91_04315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HRQ91_04315 PF03466 LysR substrate binding domain HRQ91_04320 PF01514 Secretory protein of YscJ/FliF family HRQ91_04320 PF08345 Flagellar M-ring protein C-terminal HRQ91_04325 PF01706 FliG C-terminal domain HRQ91_04325 PF14841 FliG middle domain HRQ91_04325 PF14842 FliG N-terminal domain HRQ91_04330 PF02108 Flagellar assembly protein FliH HRQ91_04335 PF18269 T3SS EscN ATPase C-terminal domain HRQ91_04335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRQ91_04335 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRQ91_04345 PF03129 Anticodon binding domain HRQ91_04345 PF02824 TGS domain HRQ91_04345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRQ91_04345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HRQ91_04350 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HRQ91_04350 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HRQ91_04365 PF01297 Zinc-uptake complex component A periplasmic HRQ91_04365 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment HRQ91_04375 PF00005 ABC transporter HRQ91_04375 PF17760 UvrA interaction domain HRQ91_04375 PF17755 UvrA DNA-binding domain HRQ91_04385 PF02562 PhoH-like protein HRQ91_04390 PF07698 7TM receptor with intracellular HD hydrolase HRQ91_04390 PF07697 7TM-HD extracellular HRQ91_04390 PF01966 HD domain HRQ91_04395 PF02130 Uncharacterized protein family UPF0054 HRQ91_04400 PF00571 CBS domain HRQ91_04400 PF03471 Transporter associated domain HRQ91_04430 PF00448 SRP54-type protein, GTPase domain HRQ91_04430 PF02881 SRP54-type protein, helical bundle domain HRQ91_04440 PF12704 MacB-like periplasmic core domain HRQ91_04440 PF02687 FtsX-like permease family HRQ91_04445 PF00005 ABC transporter HRQ91_04460 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain HRQ91_04465 PF00004 ATPase family associated with various cellular activities (AAA) HRQ91_04465 PF07724 AAA domain (Cdc48 subfamily) HRQ91_04465 PF17871 AAA lid domain HRQ91_04465 PF02861 Clp amino terminal domain, pathogenicity island component HRQ91_04465 PF10431 C-terminal, D2-small domain, of ClpB protein HRQ91_04470 PF00155 Aminotransferase class I and II HRQ91_04475 PF00156 Phosphoribosyl transferase domain HRQ91_04485 PF01351 Ribonuclease HII HRQ91_04495 PF02614 Glucuronate isomerase HRQ91_04500 PF01027 Inhibitor of apoptosis-promoting Bax1 HRQ91_04505 PF00557 Metallopeptidase family M24 HRQ91_04505 PF01321 Creatinase/Prolidase N-terminal domain HRQ91_04515 PF02554 Carbon starvation protein CstA HRQ91_04520 PF00294 pfkB family carbohydrate kinase HRQ91_04525 PF13635 Domain of unknown function (DUF4143) HRQ91_04525 PF13173 AAA domain HRQ91_04535 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_04540 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_04555 PF01053 Cys/Met metabolism PLP-dependent enzyme HRQ91_04560 PF04304 Protein of unknown function (DUF454) HRQ91_04565 PF00664 ABC transporter transmembrane region HRQ91_04565 PF00005 ABC transporter HRQ91_04570 PF00664 ABC transporter transmembrane region HRQ91_04570 PF00005 ABC transporter HRQ91_04585 PF01618 MotA/TolQ/ExbB proton channel family HRQ91_04590 PF02472 Biopolymer transport protein ExbD/TolR HRQ91_04600 PF07715 TonB-dependent Receptor Plug Domain HRQ91_04600 PF00593 TonB dependent receptor HRQ91_04650 PF02190 ATP-dependent protease La (LON) substrate-binding domain HRQ91_04650 PF00004 ATPase family associated with various cellular activities (AAA) HRQ91_04650 PF05362 Lon protease (S16) C-terminal proteolytic domain HRQ91_04670 PF17131 Outer membrane lipoprotein-sorting protein HRQ91_04680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_04690 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_04710 PF01970 Tripartite tricarboxylate transporter TctA family HRQ91_04715 PF00753 Metallo-beta-lactamase superfamily HRQ91_04715 PF12706 Beta-lactamase superfamily domain HRQ91_04725 PF00953 Glycosyl transferase family 4 HRQ91_04750 PF00005 ABC transporter HRQ91_04760 PF01330 RuvA N terminal domain HRQ91_04765 PF05496 Holliday junction DNA helicase RuvB P-loop domain HRQ91_04765 PF05491 RuvB C-terminal winged helix domain HRQ91_04765 PF17864 RuvB AAA lid domain HRQ91_04770 PF02547 Queuosine biosynthesis protein HRQ91_04790 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HRQ91_04795 PF02719 Polysaccharide biosynthesis protein HRQ91_04820 PF01740 STAS domain HRQ91_04845 PF00672 HAMP domain HRQ91_04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_04845 PF06580 Histidine kinase HRQ91_04845 PF02743 Cache domain HRQ91_04850 PF12833 Helix-turn-helix domain HRQ91_04855 PF13416 Bacterial extracellular solute-binding protein HRQ91_04860 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_04865 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_04875 PF01119 DNA mismatch repair protein, C-terminal domain HRQ91_04875 PF08676 MutL C terminal dimerisation domain HRQ91_04880 PF02609 Exonuclease VII small subunit HRQ91_04885 PF02601 Exonuclease VII, large subunit HRQ91_04885 PF13742 OB-fold nucleic acid binding domain HRQ91_04890 PF13186 Iron-sulfur cluster-binding domain HRQ91_04900 PF02348 Cytidylyltransferase HRQ91_04910 PF01520 N-acetylmuramoyl-L-alanine amidase HRQ91_04910 PF01476 LysM domain HRQ91_04920 PF04620 Flagellar filament outer layer protein Flaa HRQ91_04940 PF02614 Glucuronate isomerase HRQ91_04945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_04955 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_04965 PF00180 Isocitrate/isopropylmalate dehydrogenase HRQ91_04965 PF03737 Aldolase/RraA HRQ91_04970 PF03786 D-mannonate dehydratase (UxuA) HRQ91_04980 PF01325 Iron dependent repressor, N-terminal DNA binding domain HRQ91_04980 PF00480 ROK family HRQ91_04990 PF13407 Periplasmic binding protein domain HRQ91_04995 PF00005 ABC transporter HRQ91_05000 PF02653 Branched-chain amino acid transport system / permease component HRQ91_05010 PF16258 Domain of unknown function (DUF4912) HRQ91_05020 PF03687 Uncharacterised protein family (UPF0164) HRQ91_05060 PF00474 Sodium:solute symporter family HRQ91_05080 PF00356 Bacterial regulatory proteins, lacI family HRQ91_05090 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_05095 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_05125 PF01925 Sulfite exporter TauE/SafE HRQ91_05130 PF00890 FAD binding domain HRQ91_05130 PF04205 FMN-binding domain HRQ91_05130 PF03358 NADPH-dependent FMN reductase HRQ91_05140 PF12796 Ankyrin repeats (3 copies) HRQ91_05145 PF03033 Glycosyltransferase family 28 N-terminal domain HRQ91_05145 PF04101 Glycosyltransferase family 28 C-terminal domain HRQ91_05155 PF09115 DNA polymerase III, delta subunit, C terminal HRQ91_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_05160 PF00512 His Kinase A (phospho-acceptor) domain HRQ91_05160 PF00989 PAS fold HRQ91_05165 PF02954 Bacterial regulatory protein, Fis family HRQ91_05165 PF00072 Response regulator receiver domain HRQ91_05165 PF00158 Sigma-54 interaction domain HRQ91_05170 PF00483 Nucleotidyl transferase HRQ91_05175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRQ91_05175 PF00460 Flagella basal body rod protein HRQ91_05180 PF00460 Flagella basal body rod protein HRQ91_05180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRQ91_05195 PF00580 UvrD/REP helicase N-terminal domain HRQ91_05195 PF12705 PD-(D/E)XK nuclease superfamily HRQ91_05195 PF13361 UvrD-like helicase C-terminal domain HRQ91_05205 PF01225 Mur ligase family, catalytic domain HRQ91_05205 PF08245 Mur ligase middle domain HRQ91_05205 PF02875 Mur ligase family, glutamate ligase domain HRQ91_05215 PF08448 PAS fold HRQ91_05215 PF00990 Diguanylate cyclase, GGDEF domain HRQ91_05225 PF02388 FemAB family HRQ91_05270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRQ91_05275 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_05280 PF12911 N-terminal TM domain of oligopeptide transport permease C HRQ91_05280 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_05285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRQ91_05285 PF00005 ABC transporter HRQ91_05290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRQ91_05290 PF00005 ABC transporter HRQ91_05300 PF14821 Threonine synthase N terminus HRQ91_05300 PF00291 Pyridoxal-phosphate dependent enzyme HRQ91_05310 PF01168 Alanine racemase, N-terminal domain HRQ91_05310 PF00842 Alanine racemase, C-terminal domain HRQ91_05315 PF02875 Mur ligase family, glutamate ligase domain HRQ91_05315 PF08245 Mur ligase middle domain HRQ91_05320 PF00579 tRNA synthetases class I (W and Y) HRQ91_05325 PF01743 Poly A polymerase head domain HRQ91_05325 PF12627 Probable RNA and SrmB- binding site of polymerase A HRQ91_05325 PF13735 tRNA nucleotidyltransferase domain 2 putative HRQ91_05360 PF12706 Beta-lactamase superfamily domain HRQ91_05360 PF00753 Metallo-beta-lactamase superfamily HRQ91_05365 PF02618 YceG-like family HRQ91_05370 PF08275 DNA primase catalytic core, N-terminal domain HRQ91_05370 PF01807 CHC2 zinc finger HRQ91_05375 PF03979 Sigma-70 factor, region 1.1 HRQ91_05375 PF04545 Sigma-70, region 4 HRQ91_05375 PF04539 Sigma-70 region 3 HRQ91_05375 PF04542 Sigma-70 region 2 HRQ91_05375 PF00140 Sigma-70 factor, region 1.2 HRQ91_05410 PF00905 Penicillin binding protein transpeptidase domain HRQ91_05410 PF03717 Penicillin-binding Protein dimerisation domain HRQ91_05415 PF01098 Cell cycle protein HRQ91_05420 PF01592 NifU-like N terminal domain HRQ91_05425 PF00266 Aminotransferase class-V HRQ91_05440 PF02423 Ornithine cyclodeaminase/mu-crystallin family HRQ91_05450 PF02417 Chromate transporter HRQ91_05460 PF01048 Phosphorylase superfamily HRQ91_05470 PF01238 Phosphomannose isomerase type I HRQ91_05475 PF00679 Elongation factor G C-terminus HRQ91_05475 PF00009 Elongation factor Tu GTP binding domain HRQ91_05475 PF14492 Elongation Factor G, domain II HRQ91_05475 PF03764 Elongation factor G, domain IV HRQ91_05480 PF01709 Transcriptional regulator HRQ91_05485 PF02075 Crossover junction endodeoxyribonuclease RuvC HRQ91_05490 PF00483 Nucleotidyl transferase HRQ91_05490 PF01050 Mannose-6-phosphate isomerase HRQ91_05505 PF00534 Glycosyl transferases group 1 HRQ91_05505 PF08323 Starch synthase catalytic domain HRQ91_05515 PF02163 Peptidase family M50 HRQ91_05515 PF17820 PDZ domain HRQ91_05520 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HRQ91_05520 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HRQ91_05520 PF13288 DXP reductoisomerase C-terminal domain HRQ91_05530 PF01255 Putative undecaprenyl diphosphate synthase HRQ91_05535 PF01765 Ribosome recycling factor HRQ91_05540 PF00889 Elongation factor TS HRQ91_05545 PF00318 Ribosomal protein S2 HRQ91_05550 PF02545 Maf-like protein HRQ91_05570 PF01467 Cytidylyltransferase-like HRQ91_05575 PF01783 Ribosomal L32p protein family HRQ91_05580 PF00550 Phosphopantetheine attachment site HRQ91_05585 PF14622 Ribonuclease-III-like HRQ91_05585 PF00035 Double-stranded RNA binding motif HRQ91_05605 PF00753 Metallo-beta-lactamase superfamily HRQ91_05605 PF12706 Beta-lactamase superfamily domain HRQ91_05635 PF00398 Ribosomal RNA adenine dimethylase HRQ91_05640 PF01168 Alanine racemase, N-terminal domain HRQ91_05650 PF00849 RNA pseudouridylate synthase HRQ91_05655 PF01479 S4 domain HRQ91_05655 PF00849 RNA pseudouridylate synthase HRQ91_05660 PF00356 Bacterial regulatory proteins, lacI family HRQ91_05665 PF01228 Glycine radical HRQ91_05665 PF02901 Pyruvate formate lyase-like HRQ91_05670 PF04055 Radical SAM superfamily HRQ91_05675 PF06134 L-rhamnose isomerase (RhaA) HRQ91_05675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRQ91_05675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRQ91_05680 PF00005 ABC transporter HRQ91_05685 PF02653 Branched-chain amino acid transport system / permease component HRQ91_05690 PF13407 Periplasmic binding protein domain HRQ91_05695 PF00596 Class II Aldolase and Adducin N-terminal domain HRQ91_05720 PF03461 TRCF domain HRQ91_05720 PF17757 UvrB interaction domain HRQ91_05720 PF00271 Helicase conserved C-terminal domain HRQ91_05720 PF02559 CarD-like/TRCF domain HRQ91_05720 PF00270 DEAD/DEAH box helicase HRQ91_05730 PF02492 CobW/HypB/UreG, nucleotide-binding domain HRQ91_05735 PF00005 ABC transporter HRQ91_05735 PF08402 TOBE domain HRQ91_05745 PF03063 Prismane/CO dehydrogenase family HRQ91_05750 PF00132 Bacterial transferase hexapeptide (six repeats) HRQ91_05760 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_05765 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_05770 PF01547 Bacterial extracellular solute-binding protein HRQ91_05775 PF13378 Enolase C-terminal domain-like HRQ91_05775 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HRQ91_05780 PF02592 Putative vitamin uptake transporter HRQ91_05785 PF00696 Amino acid kinase family HRQ91_05785 PF03447 Homoserine dehydrogenase, NAD binding domain HRQ91_05785 PF13840 ACT domain HRQ91_05785 PF00742 Homoserine dehydrogenase HRQ91_05785 PF01842 ACT domain HRQ91_05790 PF05173 Dihydrodipicolinate reductase, C-terminus HRQ91_05790 PF01113 Dihydrodipicolinate reductase, N-terminus HRQ91_05795 PF00005 ABC transporter HRQ91_05795 PF17912 MalK OB fold domain HRQ91_05795 PF03459 TOBE domain HRQ91_05800 PF00679 Elongation factor G C-terminus HRQ91_05800 PF14492 Elongation Factor G, domain II HRQ91_05800 PF00009 Elongation factor Tu GTP binding domain HRQ91_05800 PF03144 Elongation factor Tu domain 2 HRQ91_05800 PF03764 Elongation factor G, domain IV HRQ91_05810 PF12833 Helix-turn-helix domain HRQ91_05810 PF00072 Response regulator receiver domain HRQ91_05815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_05815 PF00672 HAMP domain HRQ91_05815 PF02743 Cache domain HRQ91_05815 PF06580 Histidine kinase HRQ91_05820 PF13416 Bacterial extracellular solute-binding protein HRQ91_05825 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_05830 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_05835 PF02056 Family 4 glycosyl hydrolase HRQ91_05835 PF11975 Family 4 glycosyl hydrolase C-terminal domain HRQ91_05840 PF13419 Haloacid dehalogenase-like hydrolase HRQ91_05850 PF07690 Major Facilitator Superfamily HRQ91_05855 PF00465 Iron-containing alcohol dehydrogenase HRQ91_05900 PF01479 S4 domain HRQ91_05900 PF00849 RNA pseudouridylate synthase HRQ91_05910 PF01743 Poly A polymerase head domain HRQ91_05910 PF12626 Polymerase A arginine-rich C-terminus HRQ91_05910 PF12627 Probable RNA and SrmB- binding site of polymerase A HRQ91_05920 PF05958 tRNA (Uracil-5-)-methyltransferase HRQ91_05925 PF05958 tRNA (Uracil-5-)-methyltransferase HRQ91_05950 PF00731 AIR carboxylase HRQ91_05955 PF01969 Protein of unknown function DUF111 HRQ91_05970 PF08450 SMP-30/Gluconolactonase/LRE-like region HRQ91_05975 PF02780 Transketolase, C-terminal domain HRQ91_05975 PF02779 Transketolase, pyrimidine binding domain HRQ91_05980 PF00456 Transketolase, thiamine diphosphate binding domain HRQ91_05985 PF03611 PTS system sugar-specific permease component HRQ91_05990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRQ91_05995 PF02896 PEP-utilising enzyme, TIM barrel domain HRQ91_05995 PF05524 PEP-utilising enzyme, N-terminal HRQ91_05995 PF00391 PEP-utilising enzyme, mobile domain HRQ91_06005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRQ91_06010 PF08279 HTH domain HRQ91_06010 PF05043 Mga helix-turn-helix domain HRQ91_06010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRQ91_06010 PF00874 PRD domain HRQ91_06010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRQ91_06050 PF00772 DnaB-like helicase N terminal domain HRQ91_06050 PF03796 DnaB-like helicase C terminal domain HRQ91_06055 PF03948 Ribosomal protein L9, C-terminal domain HRQ91_06055 PF01281 Ribosomal protein L9, N-terminal domain HRQ91_06060 PF01084 Ribosomal protein S18 HRQ91_06065 PF00436 Single-strand binding protein family HRQ91_06070 PF01250 Ribosomal protein S6 HRQ91_06095 PF04055 Radical SAM superfamily HRQ91_06100 PF00330 Aconitase family (aconitate hydratase) HRQ91_06105 PF00694 Aconitase C-terminal domain HRQ91_06115 PF00258 Flavodoxin HRQ91_06115 PF00753 Metallo-beta-lactamase superfamily HRQ91_06140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HRQ91_06140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HRQ91_06140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HRQ91_06155 PF00535 Glycosyl transferase family 2 HRQ91_06180 PF14849 YidC periplasmic domain HRQ91_06180 PF02096 60Kd inner membrane protein HRQ91_06195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRQ91_06195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRQ91_06200 PF00266 Aminotransferase class-V HRQ91_06205 PF13439 Glycosyltransferase Family 4 HRQ91_06205 PF00534 Glycosyl transferases group 1 HRQ91_06215 PF02397 Bacterial sugar transferase HRQ91_06230 PF04551 GcpE protein HRQ91_06245 PF01813 ATP synthase subunit D HRQ91_06250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRQ91_06250 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRQ91_06255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRQ91_06255 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRQ91_06255 PF16886 ATPsynthase alpha/beta subunit N-term extension HRQ91_06265 PF01991 ATP synthase (E/31 kDa) subunit HRQ91_06270 PF01263 Aldose 1-epimerase HRQ91_06290 PF04542 Sigma-70 region 2 HRQ91_06290 PF04539 Sigma-70 region 3 HRQ91_06290 PF04545 Sigma-70, region 4 HRQ91_06300 PF10609 NUBPL iron-transfer P-loop NTPase HRQ91_06305 PF00448 SRP54-type protein, GTPase domain HRQ91_06310 PF00771 FHIPEP family HRQ91_06315 PF01312 FlhB HrpN YscU SpaS Family HRQ91_06320 PF01311 Bacterial export proteins, family 1 HRQ91_06325 PF01313 Bacterial export proteins, family 3 HRQ91_06330 PF00813 FliP family HRQ91_06340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HRQ91_06345 PF02154 Flagellar motor switch protein FliM HRQ91_06345 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HRQ91_06350 PF03748 Flagellar basal body-associated protein FliL HRQ91_06355 PF13677 Membrane MotB of proton-channel complex MotA/MotB HRQ91_06355 PF00691 OmpA family HRQ91_06370 PF00072 Response regulator receiver domain HRQ91_06370 PF00486 Transcriptional regulatory protein, C terminal HRQ91_06375 PF00672 HAMP domain HRQ91_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_06375 PF18698 Histidine kinase sensor domain HRQ91_06375 PF00512 His Kinase A (phospho-acceptor) domain HRQ91_06380 PF04055 Radical SAM superfamily HRQ91_06380 PF06969 HemN C-terminal domain HRQ91_06385 PF10502 Signal peptidase, peptidase S26 HRQ91_06390 PF01668 SmpB protein HRQ91_06400 PF01300 Telomere recombination HRQ91_06420 PF01973 Protein of unknown function DUF115 HRQ91_06450 PF08264 Anticodon-binding domain of tRNA HRQ91_06450 PF00133 tRNA synthetases class I (I, L, M and V) HRQ91_06460 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HRQ91_06520 PF00501 AMP-binding enzyme HRQ91_06525 PF00501 AMP-binding enzyme HRQ91_06530 PF02568 Thiamine biosynthesis protein (ThiI) HRQ91_06530 PF02926 THUMP domain HRQ91_06550 PF13439 Glycosyltransferase Family 4 HRQ91_06550 PF00534 Glycosyl transferases group 1 HRQ91_06555 PF03167 Uracil DNA glycosylase superfamily HRQ91_06560 PF00270 DEAD/DEAH box helicase HRQ91_06560 PF00271 Helicase conserved C-terminal domain HRQ91_06560 PF17764 3′ DNA-binding domain (3′BD) HRQ91_06560 PF18074 Primosomal protein N C-terminal domain HRQ91_06560 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HRQ91_06565 PF01416 tRNA pseudouridine synthase HRQ91_06570 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) HRQ91_06575 PF01648 4'-phosphopantetheinyl transferase superfamily HRQ91_06585 PF02457 DisA bacterial checkpoint controller nucleotide-binding HRQ91_06590 PF00809 Pterin binding enzyme HRQ91_06595 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HRQ91_06595 PF02779 Transketolase, pyrimidine binding domain HRQ91_06595 PF02780 Transketolase, C-terminal domain HRQ91_06605 PF01192 RNA polymerase Rpb6 HRQ91_06610 PF04205 FMN-binding domain HRQ91_06610 PF00890 FAD binding domain HRQ91_06620 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HRQ91_06620 PF02885 Glycosyl transferase family, helical bundle domain HRQ91_06620 PF00591 Glycosyl transferase family, a/b domain HRQ91_06625 PF01368 DHH family HRQ91_06625 PF02272 DHHA1 domain HRQ91_06625 PF17768 RecJ OB domain HRQ91_06625 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HRQ91_06630 PF04225 Opacity-associated protein A LysM-like domain HRQ91_06630 PF01551 Peptidase family M23 HRQ91_06640 PF01653 NAD-dependent DNA ligase adenylation domain HRQ91_06640 PF00533 BRCA1 C Terminus (BRCT) domain HRQ91_06640 PF03120 NAD-dependent DNA ligase OB-fold domain HRQ91_06645 PF02390 Putative methyltransferase HRQ91_06660 PF00817 impB/mucB/samB family HRQ91_06660 PF11799 impB/mucB/samB family C-terminal domain HRQ91_06660 PF11798 IMS family HHH motif HRQ91_06675 PF01975 Survival protein SurE HRQ91_06680 PF10509 Galactokinase galactose-binding signature HRQ91_06680 PF08544 GHMP kinases C terminal HRQ91_06685 PF00795 Carbon-nitrogen hydrolase HRQ91_06690 PF02632 BioY family HRQ91_06695 PF00005 ABC transporter HRQ91_06700 PF02361 Cobalt transport protein HRQ91_06710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRQ91_06710 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRQ91_06715 PF03477 ATP cone domain HRQ91_06740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HRQ91_06740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HRQ91_06755 PF01979 Amidohydrolase family HRQ91_06760 PF13580 SIS domain HRQ91_06780 PF00356 Bacterial regulatory proteins, lacI family HRQ91_06780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRQ91_06795 PF01725 Ham1 family HRQ91_06800 PF00700 Bacterial flagellin C-terminal helical region HRQ91_06800 PF00669 Bacterial flagellin N-terminal helical region HRQ91_06805 PF00700 Bacterial flagellin C-terminal helical region HRQ91_06805 PF00669 Bacterial flagellin N-terminal helical region HRQ91_06815 PF07195 Flagellar hook-associated protein 2 C-terminus HRQ91_06815 PF02465 Flagellar hook-associated protein 2 N-terminus HRQ91_06835 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HRQ91_06840 PF00814 Glycoprotease family HRQ91_06845 PF02599 Global regulator protein family HRQ91_06850 PF02623 FliW protein HRQ91_06855 PF00700 Bacterial flagellin C-terminal helical region HRQ91_06855 PF00669 Bacterial flagellin N-terminal helical region HRQ91_06860 PF07196 Flagellin hook IN motif HRQ91_06860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HRQ91_06900 PF05697 Bacterial trigger factor protein (TF) HRQ91_06900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HRQ91_06900 PF05698 Bacterial trigger factor protein (TF) C-terminus HRQ91_06905 PF00574 Clp protease HRQ91_06910 PF10431 C-terminal, D2-small domain, of ClpB protein HRQ91_06910 PF07724 AAA domain (Cdc48 subfamily) HRQ91_06910 PF06689 ClpX C4-type zinc finger HRQ91_06915 PF04309 Glycerol-3-phosphate responsive antiterminator HRQ91_06920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRQ91_06920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRQ91_06925 PF00072 Response regulator receiver domain HRQ91_06930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_06930 PF00989 PAS fold HRQ91_06930 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HRQ91_06930 PF17203 Single cache domain 3 HRQ91_06940 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_06945 PF00005 ABC transporter HRQ91_06945 PF17912 MalK OB fold domain HRQ91_06955 PF00596 Class II Aldolase and Adducin N-terminal domain HRQ91_06960 PF06134 L-rhamnose isomerase (RhaA) HRQ91_06965 PF00155 Aminotransferase class I and II HRQ91_06970 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HRQ91_06970 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HRQ91_06975 PF00005 ABC transporter HRQ91_06980 PF01458 Uncharacterized protein family (UPF0051) HRQ91_06985 PF01458 Uncharacterized protein family (UPF0051) HRQ91_06990 PF00291 Pyridoxal-phosphate dependent enzyme HRQ91_06995 PF01230 HIT domain HRQ91_07000 PF00392 Bacterial regulatory proteins, gntR family HRQ91_07000 PF07729 FCD domain HRQ91_07005 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_07015 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_07015 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_07020 PF01266 FAD dependent oxidoreductase HRQ91_07025 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_07025 PF04324 BFD-like [2Fe-2S] binding domain HRQ91_07045 PF03313 Serine dehydratase alpha chain HRQ91_07065 PF00455 DeoR C terminal sensor domain HRQ91_07065 PF08220 DeoR-like helix-turn-helix domain HRQ91_07070 PF00171 Aldehyde dehydrogenase family HRQ91_07075 PF01554 MatE HRQ91_07080 PF01842 ACT domain HRQ91_07080 PF10369 Small subunit of acetolactate synthase HRQ91_07085 PF18152 DAHP synthase ferredoxin-like domain HRQ91_07085 PF00793 DAHP synthetase I family HRQ91_07090 PF00696 Amino acid kinase family HRQ91_07090 PF01842 ACT domain HRQ91_07090 PF13840 ACT domain HRQ91_07090 PF00742 Homoserine dehydrogenase HRQ91_07090 PF03447 Homoserine dehydrogenase, NAD binding domain HRQ91_07100 PF01791 DeoC/LacD family aldolase HRQ91_07110 PF13187 4Fe-4S dicluster domain HRQ91_07130 PF00905 Penicillin binding protein transpeptidase domain HRQ91_07130 PF00912 Transglycosylase HRQ91_07135 PF17762 HTH domain found in ParB protein HRQ91_07135 PF02195 ParB-like nuclease domain HRQ91_07140 PF00579 tRNA synthetases class I (W and Y) HRQ91_07145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRQ91_07145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRQ91_07150 PF02653 Branched-chain amino acid transport system / permease component HRQ91_07155 PF02653 Branched-chain amino acid transport system / permease component HRQ91_07160 PF00005 ABC transporter HRQ91_07170 PF00596 Class II Aldolase and Adducin N-terminal domain HRQ91_07175 PF08220 DeoR-like helix-turn-helix domain HRQ91_07175 PF00455 DeoR C terminal sensor domain HRQ91_07180 PF00664 ABC transporter transmembrane region HRQ91_07180 PF00005 ABC transporter HRQ91_07185 PF00664 ABC transporter transmembrane region HRQ91_07185 PF00005 ABC transporter HRQ91_07190 PF00440 Bacterial regulatory proteins, tetR family HRQ91_07190 PF17932 Tetracyclin repressor-like, C-terminal domain HRQ91_07195 PF02540 NAD synthase HRQ91_07195 PF00795 Carbon-nitrogen hydrolase HRQ91_07200 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HRQ91_07205 PF13476 AAA domain HRQ91_07210 PF00149 Calcineurin-like phosphoesterase HRQ91_07210 PF12320 Type 5 capsule protein repressor C-terminal domain HRQ91_07225 PF01706 FliG C-terminal domain HRQ91_07225 PF14841 FliG middle domain HRQ91_07225 PF14842 FliG N-terminal domain HRQ91_07230 PF08367 Peptidase M16C associated HRQ91_07230 PF00675 Insulinase (Peptidase family M16) HRQ91_07230 PF05193 Peptidase M16 inactive domain HRQ91_07240 PF00004 ATPase family associated with various cellular activities (AAA) HRQ91_07240 PF07724 AAA domain (Cdc48 subfamily) HRQ91_07240 PF17871 AAA lid domain HRQ91_07240 PF02861 Clp amino terminal domain, pathogenicity island component HRQ91_07240 PF10431 C-terminal, D2-small domain, of ClpB protein HRQ91_07245 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HRQ91_07250 PF00364 Biotin-requiring enzyme HRQ91_07250 PF02436 Conserved carboxylase domain HRQ91_07250 PF00682 HMGL-like HRQ91_07260 PF00773 RNB domain HRQ91_07280 PF03781 Sulfatase-modifying factor enzyme 1 HRQ91_07285 PF00300 Histidine phosphatase superfamily (branch 1) HRQ91_07290 PF13649 Methyltransferase domain HRQ91_07315 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_07320 PF00005 ABC transporter HRQ91_07325 PF00209 Sodium:neurotransmitter symporter family HRQ91_07330 PF01661 Macro domain HRQ91_07335 PF01261 Xylose isomerase-like TIM barrel HRQ91_07340 PF02811 PHP domain HRQ91_07345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRQ91_07345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRQ91_07350 PF00912 Transglycosylase HRQ91_07350 PF00905 Penicillin binding protein transpeptidase domain HRQ91_07355 PF01835 MG2 domain HRQ91_07355 PF00207 Alpha-2-macroglobulin family HRQ91_07355 PF07703 Alpha-2-macroglobulin bait region domain HRQ91_07360 PF00701 Dihydrodipicolinate synthetase family HRQ91_07365 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_07370 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_07375 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_07390 PF02558 Ketopantoate reductase PanE/ApbA HRQ91_07390 PF08546 Ketopantoate reductase PanE/ApbA C terminal HRQ91_07410 PF00005 ABC transporter HRQ91_07415 PF01032 FecCD transport family HRQ91_07420 PF01497 Periplasmic binding protein HRQ91_07430 PF00891 O-methyltransferase domain HRQ91_07435 PF06445 GyrI-like small molecule binding domain HRQ91_07435 PF12833 Helix-turn-helix domain HRQ91_07450 PF07556 Protein of unknown function (DUF1538) HRQ91_07460 PF06580 Histidine kinase HRQ91_07460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_07465 PF12833 Helix-turn-helix domain HRQ91_07465 PF00072 Response regulator receiver domain HRQ91_07475 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_07480 PF00005 ABC transporter HRQ91_07480 PF08402 TOBE domain HRQ91_07490 PF09827 CRISPR associated protein Cas2 HRQ91_07520 PF00474 Sodium:solute symporter family HRQ91_07530 PF07969 Amidohydrolase family HRQ91_07535 PF03102 NeuB family HRQ91_07535 PF08666 SAF domain HRQ91_07540 PF13393 Histidyl-tRNA synthetase HRQ91_07560 PF01973 Protein of unknown function DUF115 HRQ91_07565 PF03144 Elongation factor Tu domain 2 HRQ91_07565 PF00009 Elongation factor Tu GTP binding domain HRQ91_07565 PF06421 GTP-binding protein LepA C-terminus HRQ91_07565 PF00679 Elongation factor G C-terminus HRQ91_07565 PF14492 Elongation Factor G, domain II HRQ91_07570 PF13180 PDZ domain HRQ91_07580 PF01171 PP-loop family HRQ91_07585 PF14693 Ribosomal protein TL5, C-terminal domain HRQ91_07585 PF01386 Ribosomal L25p family HRQ91_07595 PF04026 SpoVG HRQ91_07600 PF00288 GHMP kinases N terminal domain HRQ91_07600 PF08544 GHMP kinases C terminal HRQ91_07625 PF01467 Cytidylyltransferase-like HRQ91_07630 PF01926 50S ribosome-binding GTPase HRQ91_07630 PF01018 GTP1/OBG HRQ91_07635 PF00465 Iron-containing alcohol dehydrogenase HRQ91_07640 PF00595 PDZ domain HRQ91_07645 PF00890 FAD binding domain HRQ91_07645 PF04205 FMN-binding domain HRQ91_07645 PF03358 NADPH-dependent FMN reductase HRQ91_07650 PF00829 Ribosomal prokaryotic L21 protein HRQ91_07660 PF01016 Ribosomal L27 protein HRQ91_07665 PF02915 Rubrerythrin HRQ91_07670 PF01475 Ferric uptake regulator family HRQ91_07685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRQ91_07685 PF00005 ABC transporter HRQ91_07690 PF00005 ABC transporter HRQ91_07690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HRQ91_07695 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_07715 PF03485 Arginyl tRNA synthetase N terminal domain HRQ91_07715 PF05746 DALR anticodon binding domain HRQ91_07715 PF00750 tRNA synthetases class I (R) HRQ91_07735 PF02615 Malate/L-lactate dehydrogenase HRQ91_07755 PF02021 Uncharacterised protein family UPF0102 HRQ91_07765 PF01312 FlhB HrpN YscU SpaS Family HRQ91_07775 PF01245 Ribosomal protein L19 HRQ91_07780 PF01746 tRNA (Guanine-1)-methyltransferase HRQ91_07785 PF05239 PRC-barrel domain HRQ91_07785 PF01782 RimM N-terminal domain HRQ91_07795 PF00886 Ribosomal protein S16 HRQ91_07800 PF00562 RNA polymerase Rpb2, domain 6 HRQ91_07800 PF04560 RNA polymerase Rpb2, domain 7 HRQ91_07800 PF10385 RNA polymerase beta subunit external 1 domain HRQ91_07800 PF04565 RNA polymerase Rpb2, domain 3 HRQ91_07800 PF04561 RNA polymerase Rpb2, domain 2 HRQ91_07800 PF04563 RNA polymerase beta subunit HRQ91_07855 PF00211 Adenylate and Guanylate cyclase catalytic domain HRQ91_07865 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRQ91_07870 PF02743 Cache domain HRQ91_07870 PF00672 HAMP domain HRQ91_07870 PF00211 Adenylate and Guanylate cyclase catalytic domain HRQ91_07875 PF00206 Lyase HRQ91_07875 PF14698 Argininosuccinate lyase C-terminal HRQ91_07885 PF02661 Fic/DOC family HRQ91_07885 PF12728 Helix-turn-helix domain HRQ91_07890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRQ91_07890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRQ91_07890 PF00205 Thiamine pyrophosphate enzyme, central domain HRQ91_07895 PF00920 Dehydratase family HRQ91_07920 PF05198 Translation initiation factor IF-3, N-terminal domain HRQ91_07920 PF00707 Translation initiation factor IF-3, C-terminal domain HRQ91_07925 PF01632 Ribosomal protein L35 HRQ91_07930 PF00453 Ribosomal protein L20 HRQ91_07940 PF05164 Cell division protein ZapA HRQ91_07945 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HRQ91_07950 PF11849 Domain of unknown function (DUF3369) HRQ91_07955 PF01189 16S rRNA methyltransferase RsmB/F HRQ91_07955 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HRQ91_07955 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HRQ91_07965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_07975 PF16811 TRAP transporter T-component HRQ91_07980 PF10371 Domain of unknown function HRQ91_07980 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HRQ91_07980 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HRQ91_07980 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HRQ91_07980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRQ91_07990 PF00301 Rubredoxin HRQ91_07995 PF00753 Metallo-beta-lactamase superfamily HRQ91_07995 PF00301 Rubredoxin HRQ91_07995 PF00258 Flavodoxin HRQ91_08000 PF00106 short chain dehydrogenase HRQ91_08005 PF01171 PP-loop family HRQ91_08010 PF00152 tRNA synthetases class II (D, K and N) HRQ91_08015 PF08207 Elongation factor P (EF-P) KOW-like domain HRQ91_08015 PF01132 Elongation factor P (EF-P) OB domain HRQ91_08015 PF09285 Elongation factor P, C-terminal HRQ91_08025 PF00072 Response regulator receiver domain HRQ91_08035 PF01584 CheW-like domain HRQ91_08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_08040 PF02895 Signal transducing histidine kinase, homodimeric domain HRQ91_08040 PF01584 CheW-like domain HRQ91_08040 PF07194 P2 response regulator binding domain HRQ91_08040 PF01627 Hpt domain HRQ91_08050 PF01757 Acyltransferase family HRQ91_08055 PF00155 Aminotransferase class I and II HRQ91_08060 PF01177 Asp/Glu/Hydantoin racemase HRQ91_08090 PF00156 Phosphoribosyl transferase domain HRQ91_08095 PF00999 Sodium/hydrogen exchanger family HRQ91_08100 PF00180 Isocitrate/isopropylmalate dehydrogenase HRQ91_08105 PF00694 Aconitase C-terminal domain HRQ91_08105 PF00330 Aconitase family (aconitate hydratase) HRQ91_08110 PF00534 Glycosyl transferases group 1 HRQ91_08110 PF13439 Glycosyltransferase Family 4 HRQ91_08115 PF00270 DEAD/DEAH box helicase HRQ91_08115 PF00271 Helicase conserved C-terminal domain HRQ91_08135 PF04205 FMN-binding domain HRQ91_08135 PF00890 FAD binding domain HRQ91_08140 PF06470 SMC proteins Flexible Hinge Domain HRQ91_08140 PF02463 RecF/RecN/SMC N terminal domain HRQ91_08160 PF02403 Seryl-tRNA synthetase N-terminal domain HRQ91_08160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRQ91_08165 PF01594 AI-2E family transporter HRQ91_08180 PF13173 AAA domain HRQ91_08180 PF13635 Domain of unknown function (DUF4143) HRQ91_08205 PF00860 Permease family HRQ91_08210 PF10415 Fumarase C C-terminus HRQ91_08210 PF00206 Lyase HRQ91_08220 PF08264 Anticodon-binding domain of tRNA HRQ91_08220 PF00133 tRNA synthetases class I (I, L, M and V) HRQ91_08220 PF10458 Valyl tRNA synthetase tRNA binding arm HRQ91_08225 PF01970 Tripartite tricarboxylate transporter TctA family HRQ91_08250 PF07670 Nucleoside recognition HRQ91_08250 PF02421 Ferrous iron transport protein B HRQ91_08250 PF07664 Ferrous iron transport protein B C terminus HRQ91_08250 PF17910 FeoB cytosolic helical domain HRQ91_08265 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_08270 PF00005 ABC transporter HRQ91_08270 PF08402 TOBE domain HRQ91_08280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_08280 PF02743 Cache domain HRQ91_08280 PF00672 HAMP domain HRQ91_08285 PF00258 Flavodoxin HRQ91_08300 PF00814 Glycoprotease family HRQ91_08305 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HRQ91_08335 PF01268 Formate--tetrahydrofolate ligase HRQ91_08340 PF01479 S4 domain HRQ91_08340 PF00849 RNA pseudouridylate synthase HRQ91_08345 PF00285 Citrate synthase, C-terminal domain HRQ91_08350 PF00557 Metallopeptidase family M24 HRQ91_08355 PF00226 DnaJ domain HRQ91_08355 PF01556 DnaJ C terminal domain HRQ91_08355 PF00684 DnaJ central domain HRQ91_08365 PF00480 ROK family HRQ91_08365 PF01325 Iron dependent repressor, N-terminal DNA binding domain HRQ91_08375 PF05378 Hydantoinase/oxoprolinase N-terminal region HRQ91_08375 PF01968 Hydantoinase/oxoprolinase HRQ91_08385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HRQ91_08385 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_08390 PF08240 Alcohol dehydrogenase GroES-like domain HRQ91_08390 PF00107 Zinc-binding dehydrogenase HRQ91_08395 PF01813 ATP synthase subunit D HRQ91_08400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRQ91_08400 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRQ91_08405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HRQ91_08405 PF02874 ATP synthase alpha/beta family, beta-barrel domain HRQ91_08405 PF16886 ATPsynthase alpha/beta subunit N-term extension HRQ91_08425 PF01496 V-type ATPase 116kDa subunit family HRQ91_08440 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HRQ91_08440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HRQ91_08440 PF02378 Phosphotransferase system, EIIC HRQ91_08445 PF03840 Preprotein translocase SecG subunit HRQ91_08450 PF00121 Triosephosphate isomerase HRQ91_08455 PF00162 Phosphoglycerate kinase HRQ91_08460 PF01979 Amidohydrolase family HRQ91_08465 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_08475 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_08480 PF00356 Bacterial regulatory proteins, lacI family HRQ91_08480 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRQ91_08485 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HRQ91_08490 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HRQ91_08495 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HRQ91_08495 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HRQ91_08510 PF02954 Bacterial regulatory protein, Fis family HRQ91_08510 PF00158 Sigma-54 interaction domain HRQ91_08515 PF00575 S1 RNA binding domain HRQ91_08520 PF01479 S4 domain HRQ91_08520 PF00849 RNA pseudouridylate synthase HRQ91_08525 PF04079 Segregation and condensation complex subunit ScpB HRQ91_08530 PF02616 Segregation and condensation protein ScpA HRQ91_08535 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HRQ91_08540 PF00154 recA bacterial DNA recombination protein HRQ91_08560 PF00834 Ribulose-phosphate 3 epimerase family HRQ91_08575 PF03372 Endonuclease/Exonuclease/phosphatase family HRQ91_08600 PF01063 Amino-transferase class IV HRQ91_08635 PF04321 RmlD substrate binding domain HRQ91_08640 PF16363 GDP-mannose 4,6 dehydratase HRQ91_08645 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HRQ91_08650 PF00483 Nucleotidyl transferase HRQ91_08655 PF00535 Glycosyl transferase family 2 HRQ91_08665 PF00132 Bacterial transferase hexapeptide (six repeats) HRQ91_08675 PF14307 Glycosyltransferase WbsX HRQ91_08675 PF05045 Rhamnan synthesis protein F HRQ91_08680 PF00132 Bacterial transferase hexapeptide (six repeats) HRQ91_08685 PF00535 Glycosyl transferase family 2 HRQ91_08690 PF02779 Transketolase, pyrimidine binding domain HRQ91_08695 PF00456 Transketolase, thiamine diphosphate binding domain HRQ91_08700 PF07836 DmpG-like communication domain HRQ91_08700 PF00682 HMGL-like HRQ91_08705 PF00682 HMGL-like HRQ91_08705 PF08502 LeuA allosteric (dimerisation) domain HRQ91_08710 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HRQ91_08710 PF00205 Thiamine pyrophosphate enzyme, central domain HRQ91_08710 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HRQ91_08720 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HRQ91_08725 PF16363 GDP-mannose 4,6 dehydratase HRQ91_08730 PF00483 Nucleotidyl transferase HRQ91_08735 PF13193 AMP-binding enzyme C-terminal domain HRQ91_08735 PF00501 AMP-binding enzyme HRQ91_08735 PF16177 Acetyl-coenzyme A synthetase N-terminus HRQ91_08740 PF01264 Chorismate synthase HRQ91_08755 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HRQ91_08755 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HRQ91_08760 PF01118 Semialdehyde dehydrogenase, NAD binding domain HRQ91_08760 PF02774 Semialdehyde dehydrogenase, dimerisation domain HRQ91_08765 PF00701 Dihydrodipicolinate synthetase family HRQ91_08775 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_08780 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_08790 PF07687 Peptidase dimerisation domain HRQ91_08790 PF01546 Peptidase family M20/M25/M40 HRQ91_08810 PF03781 Sulfatase-modifying factor enzyme 1 HRQ91_08820 PF00113 Enolase, C-terminal TIM barrel domain HRQ91_08820 PF03952 Enolase, N-terminal domain HRQ91_08830 PF00551 Formyl transferase HRQ91_08835 PF00586 AIR synthase related protein, N-terminal domain HRQ91_08835 PF02769 AIR synthase related protein, C-terminal domain HRQ91_08840 PF00156 Phosphoribosyl transferase domain HRQ91_08845 PF00731 AIR carboxylase HRQ91_08855 PF06123 Inner membrane protein CreD HRQ91_08860 PF02743 Cache domain HRQ91_08860 PF00672 HAMP domain HRQ91_08860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_08865 PF01165 Ribosomal protein S21 HRQ91_08870 PF07238 PilZ domain HRQ91_08890 PF00027 Cyclic nucleotide-binding domain HRQ91_08890 PF13545 Crp-like helix-turn-helix domain HRQ91_08895 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HRQ91_08895 PF01565 FAD binding domain HRQ91_08900 PF01406 tRNA synthetases class I (C) catalytic domain HRQ91_08900 PF09190 DALR domain HRQ91_08920 PF00696 Amino acid kinase family HRQ91_08925 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HRQ91_08930 PF04002 RadC-like JAB domain HRQ91_08940 PF00595 PDZ domain HRQ91_08945 PF02151 UvrB/uvrC motif HRQ91_08945 PF04851 Type III restriction enzyme, res subunit HRQ91_08945 PF00271 Helicase conserved C-terminal domain HRQ91_08945 PF17757 UvrB interaction domain HRQ91_08945 PF12344 Ultra-violet resistance protein B HRQ91_08950 PF00005 ABC transporter HRQ91_08955 PF01032 FecCD transport family HRQ91_08980 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family HRQ91_08985 PF02934 GatB/GatE catalytic domain HRQ91_08985 PF02637 GatB domain HRQ91_08990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_08990 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_09000 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_09005 PF03144 Elongation factor Tu domain 2 HRQ91_09005 PF00009 Elongation factor Tu GTP binding domain HRQ91_09005 PF14492 Elongation Factor G, domain II HRQ91_09005 PF00679 Elongation factor G C-terminus HRQ91_09005 PF03764 Elongation factor G, domain IV HRQ91_09015 PF16916 Dimerisation domain of Zinc Transporter HRQ91_09015 PF01545 Cation efflux family HRQ91_09030 PF08220 DeoR-like helix-turn-helix domain HRQ91_09030 PF00455 DeoR C terminal sensor domain HRQ91_09050 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_09055 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_09065 PF00933 Glycosyl hydrolase family 3 N terminal domain HRQ91_09070 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_09075 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_09080 PF01547 Bacterial extracellular solute-binding protein HRQ91_09090 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRQ91_09090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRQ91_09100 PF00672 HAMP domain HRQ91_09100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_09100 PF17202 Single cache domain 3 HRQ91_09120 PF00005 ABC transporter HRQ91_09125 PF12683 Protein of unknown function (DUF3798) HRQ91_09130 PF12683 Protein of unknown function (DUF3798) HRQ91_09135 PF04055 Radical SAM superfamily HRQ91_09140 PF02901 Pyruvate formate lyase-like HRQ91_09140 PF01228 Glycine radical HRQ91_09165 PF00248 Aldo/keto reductase family HRQ91_09170 PF01205 Uncharacterized protein family UPF0029 HRQ91_09170 PF09186 Domain of unknown function (DUF1949) HRQ91_09180 PF00521 DNA gyrase/topoisomerase IV, subunit A HRQ91_09185 PF01751 Toprim domain HRQ91_09185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_09185 PF00986 DNA gyrase B subunit, carboxyl terminus HRQ91_09185 PF00204 DNA gyrase B HRQ91_09190 PF13603 Leucyl-tRNA synthetase, Domain 2 HRQ91_09190 PF09334 tRNA synthetases class I (M) HRQ91_09190 PF08264 Anticodon-binding domain of tRNA HRQ91_09190 PF00133 tRNA synthetases class I (I, L, M and V) HRQ91_09205 PF01740 STAS domain HRQ91_09220 PF00684 DnaJ central domain HRQ91_09220 PF00226 DnaJ domain HRQ91_09220 PF01556 DnaJ C terminal domain HRQ91_09225 PF00012 Hsp70 protein HRQ91_09230 PF01025 GrpE HRQ91_09235 PF00849 RNA pseudouridylate synthase HRQ91_09255 PF05191 Adenylate kinase, active site lid HRQ91_09265 PF00294 pfkB family carbohydrate kinase HRQ91_09270 PF00294 pfkB family carbohydrate kinase HRQ91_09280 PF00005 ABC transporter HRQ91_09285 PF00005 ABC transporter HRQ91_09290 PF01156 Inosine-uridine preferring nucleoside hydrolase HRQ91_09305 PF00270 DEAD/DEAH box helicase HRQ91_09305 PF00271 Helicase conserved C-terminal domain HRQ91_09310 PF00005 ABC transporter HRQ91_09310 PF00664 ABC transporter transmembrane region HRQ91_09335 PF01555 DNA methylase HRQ91_09340 PF00005 ABC transporter HRQ91_09340 PF08021 Siderophore-interacting FAD-binding domain HRQ91_09340 PF00664 ABC transporter transmembrane region HRQ91_09340 PF04954 Siderophore-interacting protein HRQ91_09345 PF02311 AraC-like ligand binding domain HRQ91_09345 PF12833 Helix-turn-helix domain HRQ91_09360 PF00005 ABC transporter HRQ91_09360 PF00664 ABC transporter transmembrane region HRQ91_09365 PF00664 ABC transporter transmembrane region HRQ91_09365 PF00005 ABC transporter HRQ91_09370 PF12833 Helix-turn-helix domain HRQ91_09395 PF01047 MarR family HRQ91_09400 PF01938 TRAM domain HRQ91_09400 PF00919 Uncharacterized protein family UPF0004 HRQ91_09400 PF04055 Radical SAM superfamily HRQ91_09405 PF02649 Type I GTP cyclohydrolase folE2 HRQ91_09410 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HRQ91_09410 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HRQ91_09435 PF00294 pfkB family carbohydrate kinase HRQ91_09440 PF01791 DeoC/LacD family aldolase HRQ91_09445 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_09445 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_09450 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_09460 PF00596 Class II Aldolase and Adducin N-terminal domain HRQ91_09470 PF00455 DeoR C terminal sensor domain HRQ91_09470 PF08220 DeoR-like helix-turn-helix domain HRQ91_09480 PF01425 Amidase HRQ91_09490 PF01336 OB-fold nucleic acid binding domain HRQ91_09490 PF00152 tRNA synthetases class II (D, K and N) HRQ91_09495 PF00117 Glutamine amidotransferase class-I HRQ91_09495 PF06418 CTP synthase N-terminus HRQ91_09500 PF00117 Glutamine amidotransferase class-I HRQ91_09500 PF00958 GMP synthase C terminal domain HRQ91_09500 PF02540 NAD synthase HRQ91_09505 PF01259 SAICAR synthetase HRQ91_09510 PF00849 RNA pseudouridylate synthase HRQ91_09515 PF01613 Flavin reductase like domain HRQ91_09520 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_09525 PF00005 ABC transporter HRQ91_09530 PF00497 Bacterial extracellular solute-binding proteins, family 3 HRQ91_09535 PF01554 MatE HRQ91_09540 PF13784 Fic/DOC family N-terminal HRQ91_09540 PF02661 Fic/DOC family HRQ91_09550 PF01960 ArgJ family HRQ91_09555 PF00696 Amino acid kinase family HRQ91_09560 PF00202 Aminotransferase class-III HRQ91_09570 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRQ91_09570 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRQ91_09575 PF01261 Xylose isomerase-like TIM barrel HRQ91_09590 PF00288 GHMP kinases N terminal domain HRQ91_09590 PF10509 Galactokinase galactose-binding signature HRQ91_09590 PF08544 GHMP kinases C terminal HRQ91_09595 PF00950 ABC 3 transport family HRQ91_09600 PF00950 ABC 3 transport family HRQ91_09605 PF00005 ABC transporter HRQ91_09610 PF01297 Zinc-uptake complex component A periplasmic HRQ91_09615 PF01325 Iron dependent repressor, N-terminal DNA binding domain HRQ91_09615 PF02742 Iron dependent repressor, metal binding and dimerisation domain HRQ91_09620 PF00270 DEAD/DEAH box helicase HRQ91_09620 PF00271 Helicase conserved C-terminal domain HRQ91_09620 PF00570 HRDC domain HRQ91_09620 PF16124 RecQ zinc-binding HRQ91_09620 PF09382 RQC domain HRQ91_09645 PF13635 Domain of unknown function (DUF4143) HRQ91_09645 PF13173 AAA domain HRQ91_09655 PF00117 Glutamine amidotransferase class-I HRQ91_09660 PF00977 Histidine biosynthesis protein HRQ91_09670 PF01242 6-pyruvoyl tetrahydropterin synthase HRQ91_09675 PF08245 Mur ligase middle domain HRQ91_09675 PF01225 Mur ligase family, catalytic domain HRQ91_09675 PF02875 Mur ligase family, glutamate ligase domain HRQ91_09680 PF01820 D-ala D-ala ligase N-terminus HRQ91_09680 PF07478 D-ala D-ala ligase C-terminus HRQ91_09685 PF02875 Mur ligase family, glutamate ligase domain HRQ91_09685 PF08245 Mur ligase middle domain HRQ91_09695 PF01261 Xylose isomerase-like TIM barrel HRQ91_09700 PF00709 Adenylosuccinate synthetase HRQ91_09705 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HRQ91_09730 PF13361 UvrD-like helicase C-terminal domain HRQ91_09730 PF00580 UvrD/REP helicase N-terminal domain HRQ91_09735 PF04055 Radical SAM superfamily HRQ91_09735 PF18693 TRAM domain HRQ91_09735 PF00919 Uncharacterized protein family UPF0004 HRQ91_09745 PF03548 Outer membrane lipoprotein carrier protein LolA HRQ91_09770 PF13488 Glycine zipper HRQ91_09770 PF00691 OmpA family HRQ91_09780 PF00950 ABC 3 transport family HRQ91_09785 PF00005 ABC transporter HRQ91_09790 PF01554 MatE HRQ91_09805 PF00793 DAHP synthetase I family HRQ91_09805 PF18152 DAHP synthase ferredoxin-like domain HRQ91_09810 PF02153 Prephenate dehydrogenase HRQ91_09815 PF00156 Phosphoribosyl transferase domain HRQ91_09820 PF01081 KDPG and KHG aldolase HRQ91_09825 PF00464 Serine hydroxymethyltransferase HRQ91_09830 PF13472 GDSL-like Lipase/Acylhydrolase family HRQ91_09835 PF00571 CBS domain HRQ91_09835 PF00478 IMP dehydrogenase / GMP reductase domain HRQ91_09840 PF14537 Cytochrome c3 HRQ91_09840 PF00890 FAD binding domain HRQ91_09850 PF02811 PHP domain HRQ91_09850 PF07733 Bacterial DNA polymerase III alpha NTPase domain HRQ91_09850 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HRQ91_09850 PF14579 Helix-hairpin-helix motif HRQ91_09855 PF02325 YGGT family HRQ91_09860 PF00270 DEAD/DEAH box helicase HRQ91_09860 PF00271 Helicase conserved C-terminal domain HRQ91_09860 PF17191 RecG wedge domain HRQ91_09865 PF03979 Sigma-70 factor, region 1.1 HRQ91_09865 PF00140 Sigma-70 factor, region 1.2 HRQ91_09865 PF04542 Sigma-70 region 2 HRQ91_09865 PF04539 Sigma-70 region 3 HRQ91_09865 PF04545 Sigma-70, region 4 HRQ91_09870 PF00166 Chaperonin 10 Kd subunit HRQ91_09880 PF01029 NusB family HRQ91_09885 PF13145 PPIC-type PPIASE domain HRQ91_09890 PF01411 tRNA synthetases class II (A) HRQ91_09890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HRQ91_09900 PF00301 Rubredoxin HRQ91_09905 PF01880 Desulfoferrodoxin HRQ91_09905 PF06397 Desulfoferrodoxin, N-terminal domain HRQ91_09910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HRQ91_09910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HRQ91_09915 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HRQ91_09915 PF03129 Anticodon binding domain HRQ91_09915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRQ91_09935 PF00075 RNase H HRQ91_09940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HRQ91_09945 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HRQ91_09945 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HRQ91_09990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HRQ91_09995 PF00871 Acetokinase family HRQ91_10005 PF04962 KduI/IolB family HRQ91_10015 PF01965 DJ-1/PfpI family HRQ91_10020 PF00072 Response regulator receiver domain HRQ91_10025 PF00672 HAMP domain HRQ91_10025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_10025 PF01627 Hpt domain HRQ91_10025 PF00072 Response regulator receiver domain HRQ91_10025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HRQ91_10025 PF00512 His Kinase A (phospho-acceptor) domain HRQ91_10035 PF01258 Prokaryotic dksA/traR C4-type zinc finger HRQ91_10040 PF01176 Translation initiation factor 1A / IF-1 HRQ91_10045 PF00226 DnaJ domain HRQ91_10045 PF01556 DnaJ C terminal domain HRQ91_10045 PF00684 DnaJ central domain HRQ91_10050 PF01713 Smr domain HRQ91_10050 PF00488 MutS domain V HRQ91_10065 PF00092 von Willebrand factor type A domain HRQ91_10075 PF01882 Protein of unknown function DUF58 HRQ91_10080 PF07726 ATPase family associated with various cellular activities (AAA) HRQ91_10080 PF17863 AAA lid domain HRQ91_10100 PF03600 Citrate transporter HRQ91_10105 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain HRQ91_10105 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain HRQ91_10120 PF00005 ABC transporter HRQ91_10150 PF02527 rRNA small subunit methyltransferase G HRQ91_10160 PF00155 Aminotransferase class I and II HRQ91_10165 PF01037 Lrp/AsnC ligand binding domain HRQ91_10170 PF01634 ATP phosphoribosyltransferase HRQ91_10170 PF08029 HisG, C-terminal domain HRQ91_10175 PF00704 Glycosyl hydrolases family 18 HRQ91_10185 PF00596 Class II Aldolase and Adducin N-terminal domain HRQ91_10195 PF01926 50S ribosome-binding GTPase HRQ91_10195 PF06071 Protein of unknown function (DUF933) HRQ91_10200 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HRQ91_10205 PF08501 Shikimate dehydrogenase substrate binding domain HRQ91_10205 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HRQ91_10215 PF00293 NUDIX domain HRQ91_10225 PF03781 Sulfatase-modifying factor enzyme 1 HRQ91_10230 PF00342 Phosphoglucose isomerase HRQ91_10250 PF02424 ApbE family HRQ91_10255 PF02938 GAD domain HRQ91_10255 PF00152 tRNA synthetases class II (D, K and N) HRQ91_10255 PF01336 OB-fold nucleic acid binding domain HRQ91_10265 PF03006 Haemolysin-III related HRQ91_10270 PF01925 Sulfite exporter TauE/SafE HRQ91_10275 PF00588 SpoU rRNA Methylase family HRQ91_10275 PF08032 RNA 2'-O ribose methyltransferase substrate binding HRQ91_10280 PF02810 SEC-C motif HRQ91_10285 PF02386 Cation transport protein HRQ91_10295 PF01625 Peptide methionine sulfoxide reductase HRQ91_10295 PF01641 SelR domain HRQ91_10300 PF00578 AhpC/TSA family HRQ91_10320 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HRQ91_10320 PF08666 SAF domain HRQ91_10325 PF08125 Mannitol dehydrogenase C-terminal domain HRQ91_10325 PF01232 Mannitol dehydrogenase Rossmann domain HRQ91_10330 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_10330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_10340 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_10345 PF08240 Alcohol dehydrogenase GroES-like domain HRQ91_10345 PF00107 Zinc-binding dehydrogenase HRQ91_10355 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_10365 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_10380 PF00672 HAMP domain HRQ91_10380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_10380 PF02743 Cache domain HRQ91_10390 PF08220 DeoR-like helix-turn-helix domain HRQ91_10390 PF00455 DeoR C terminal sensor domain HRQ91_10400 PF00005 ABC transporter HRQ91_10405 PF02653 Branched-chain amino acid transport system / permease component HRQ91_10410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HRQ91_10410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HRQ91_10415 PF00596 Class II Aldolase and Adducin N-terminal domain HRQ91_10420 PF00571 CBS domain HRQ91_10420 PF01380 SIS domain HRQ91_10430 PF03167 Uracil DNA glycosylase superfamily HRQ91_10465 PF01266 FAD dependent oxidoreductase HRQ91_10470 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_10470 PF04324 BFD-like [2Fe-2S] binding domain HRQ91_10515 PF01435 Peptidase family M48 HRQ91_10515 PF16491 CAAX prenyl protease N-terminal, five membrane helices HRQ91_10520 PF06874 Firmicute fructose-1,6-bisphosphatase HRQ91_10525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_10545 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_10555 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_10570 PF01979 Amidohydrolase family HRQ91_10575 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HRQ91_10575 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HRQ91_10580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HRQ91_10580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HRQ91_10585 PF07055 Enoyl reductase FAD binding domain HRQ91_10585 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HRQ91_10585 PF12241 Trans-2-enoyl-CoA reductase catalytic region HRQ91_10590 PF00440 Bacterial regulatory proteins, tetR family HRQ91_10595 PF01170 Putative RNA methylase family UPF0020 HRQ91_10595 PF02926 THUMP domain HRQ91_10600 PF01180 Dihydroorotate dehydrogenase HRQ91_10605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HRQ91_10610 PF00501 AMP-binding enzyme HRQ91_10610 PF13193 AMP-binding enzyme C-terminal domain HRQ91_10645 PF00295 Glycosyl hydrolases family 28 HRQ91_10650 PF01497 Periplasmic binding protein HRQ91_10650 PF12833 Helix-turn-helix domain HRQ91_10655 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_10660 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_10665 PF13416 Bacterial extracellular solute-binding protein HRQ91_10675 PF02673 Bacitracin resistance protein BacA HRQ91_10680 PF00664 ABC transporter transmembrane region HRQ91_10680 PF00005 ABC transporter HRQ91_10690 PF01256 Carbohydrate kinase HRQ91_10690 PF03853 YjeF-related protein N-terminus HRQ91_10695 PF00120 Glutamine synthetase, catalytic domain HRQ91_10695 PF18318 Glutamine synthetase C-terminal domain HRQ91_10695 PF12437 Glutamine synthetase type III N terminal HRQ91_10700 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HRQ91_10700 PF02843 Phosphoribosylglycinamide synthetase, C domain HRQ91_10700 PF02844 Phosphoribosylglycinamide synthetase, N domain HRQ91_10710 PF07470 Glycosyl Hydrolase Family 88 HRQ91_10715 PF00703 Glycosyl hydrolases family 2 HRQ91_10715 PF02837 Glycosyl hydrolases family 2, sugar binding domain HRQ91_10715 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HRQ91_10720 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_10725 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_10730 PF13416 Bacterial extracellular solute-binding protein HRQ91_10735 PF12833 Helix-turn-helix domain HRQ91_10745 PF00700 Bacterial flagellin C-terminal helical region HRQ91_10745 PF00669 Bacterial flagellin N-terminal helical region HRQ91_10750 PF02132 RecR protein HRQ91_10750 PF13662 Toprim domain HRQ91_10755 PF02575 YbaB/EbfC DNA-binding family HRQ91_10760 PF12169 DNA polymerase III subunits gamma and tau domain III HRQ91_10765 PF00294 pfkB family carbohydrate kinase HRQ91_10775 PF13186 Iron-sulfur cluster-binding domain HRQ91_10775 PF04055 Radical SAM superfamily HRQ91_10780 PF13419 Haloacid dehalogenase-like hydrolase HRQ91_10785 PF04616 Glycosyl hydrolases family 43 HRQ91_10785 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain HRQ91_10790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRQ91_10790 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRQ91_10800 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HRQ91_10800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HRQ91_10810 PF02954 Bacterial regulatory protein, Fis family HRQ91_10810 PF00072 Response regulator receiver domain HRQ91_10810 PF00158 Sigma-54 interaction domain HRQ91_10815 PF00756 Putative esterase HRQ91_10815 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HRQ91_10820 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_10825 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_10840 PF00578 AhpC/TSA family HRQ91_10850 PF00005 ABC transporter HRQ91_10855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HRQ91_10855 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_10860 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HRQ91_10860 PF00175 Oxidoreductase NAD-binding domain HRQ91_10865 PF17674 HHH domain HRQ91_10865 PF00575 S1 RNA binding domain HRQ91_10865 PF09371 Tex-like protein N-terminal domain HRQ91_10865 PF16921 Tex protein YqgF-like domain HRQ91_10870 PF05643 Putative bacterial lipoprotein (DUF799) HRQ91_10885 PF03783 Curli production assembly/transport component CsgG HRQ91_10890 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HRQ91_10890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HRQ91_10900 PF01409 tRNA synthetases class II core domain (F) HRQ91_10920 PF01207 Dihydrouridine synthase (Dus) HRQ91_10925 PF01026 TatD related DNase HRQ91_10930 PF01551 Peptidase family M23 HRQ91_10930 PF04225 Opacity-associated protein A LysM-like domain HRQ91_10945 PF04468 PSP1 C-terminal conserved region HRQ91_10955 PF00037 4Fe-4S binding domain HRQ91_10955 PF11953 Domain of unknown function (DUF3470) HRQ91_10965 PF00873 AcrB/AcrD/AcrF family HRQ91_10980 PF08361 MAATS-type transcriptional repressor, C-terminal region HRQ91_10980 PF00440 Bacterial regulatory proteins, tetR family HRQ91_10985 PF04073 Aminoacyl-tRNA editing domain HRQ91_10985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HRQ91_10985 PF03129 Anticodon binding domain HRQ91_11005 PF01638 HxlR-like helix-turn-helix HRQ91_11050 PF00390 Malic enzyme, N-terminal domain HRQ91_11050 PF03949 Malic enzyme, NAD binding domain HRQ91_11065 PF00005 ABC transporter HRQ91_11065 PF12848 ABC transporter HRQ91_11070 PF00830 Ribosomal L28 family HRQ91_11075 PF12706 Beta-lactamase superfamily domain HRQ91_11075 PF00753 Metallo-beta-lactamase superfamily HRQ91_11090 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HRQ91_11090 PF14572 Phosphoribosyl synthetase-associated domain HRQ91_11105 PF03786 D-mannonate dehydratase (UxuA) HRQ91_11120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HRQ91_11120 PF13378 Enolase C-terminal domain-like HRQ91_11125 PF01970 Tripartite tricarboxylate transporter TctA family HRQ91_11135 PF03401 Tripartite tricarboxylate transporter family receptor HRQ91_11140 PF01979 Amidohydrolase family HRQ91_11145 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_11150 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_11150 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HRQ91_11160 PF00701 Dihydrodipicolinate synthetase family HRQ91_11165 PF13378 Enolase C-terminal domain-like HRQ91_11170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HRQ91_11170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HRQ91_11180 PF13419 Haloacid dehalogenase-like hydrolase HRQ91_11195 PF00899 ThiF family HRQ91_11225 PF03781 Sulfatase-modifying factor enzyme 1 HRQ91_11270 PF00873 AcrB/AcrD/AcrF family HRQ91_11295 PF00892 EamA-like transporter family HRQ91_11320 PF12464 Maltose acetyltransferase HRQ91_11320 PF14602 Hexapeptide repeat of succinyl-transferase HRQ91_11335 PF00248 Aldo/keto reductase family HRQ91_11345 PF04954 Siderophore-interacting protein HRQ91_11345 PF08021 Siderophore-interacting FAD-binding domain HRQ91_11345 PF00005 ABC transporter HRQ91_11345 PF00664 ABC transporter transmembrane region HRQ91_11350 PF00664 ABC transporter transmembrane region HRQ91_11350 PF00005 ABC transporter HRQ91_11355 PF00664 ABC transporter transmembrane region HRQ91_11355 PF00005 ABC transporter HRQ91_11365 PF00664 ABC transporter transmembrane region HRQ91_11365 PF00005 ABC transporter HRQ91_11370 PF08361 MAATS-type transcriptional repressor, C-terminal region HRQ91_11370 PF00440 Bacterial regulatory proteins, tetR family HRQ91_11375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HRQ91_11375 PF00672 HAMP domain HRQ91_11375 PF02743 Cache domain HRQ91_11420 PF00501 AMP-binding enzyme HRQ91_11425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HRQ91_11425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HRQ91_11425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HRQ91_11425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HRQ91_11430 PF12794 Mechanosensitive ion channel inner membrane domain 1 HRQ91_11430 PF12795 Mechanosensitive ion channel porin domain HRQ91_11430 PF00924 Mechanosensitive ion channel HRQ91_11435 PF00730 HhH-GPD superfamily base excision DNA repair protein HRQ91_11435 PF00633 Helix-hairpin-helix motif HRQ91_11435 PF10576 Iron-sulfur binding domain of endonuclease III HRQ91_11440 PF02772 S-adenosylmethionine synthetase, central domain HRQ91_11440 PF02773 S-adenosylmethionine synthetase, C-terminal domain HRQ91_11440 PF00438 S-adenosylmethionine synthetase, N-terminal domain HRQ91_11450 PF01580 FtsK/SpoIIIE family HRQ91_11450 PF09397 Ftsk gamma domain HRQ91_11450 PF17854 FtsK alpha domain HRQ91_11455 PF00365 Phosphofructokinase HRQ91_11460 PF02872 5'-nucleotidase, C-terminal domain HRQ91_11460 PF00149 Calcineurin-like phosphoesterase HRQ91_11465 PF00356 Bacterial regulatory proteins, lacI family HRQ91_11465 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HRQ91_11470 PF01479 S4 domain HRQ91_11470 PF00163 Ribosomal protein S4/S9 N-terminal domain HRQ91_11480 PF06580 Histidine kinase HRQ91_11480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_11480 PF00672 HAMP domain HRQ91_11480 PF02743 Cache domain HRQ91_11485 PF00072 Response regulator receiver domain HRQ91_11485 PF12833 Helix-turn-helix domain HRQ91_11490 PF03480 Bacterial extracellular solute-binding protein, family 7 HRQ91_11500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HRQ91_11510 PF00892 EamA-like transporter family HRQ91_11525 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_11530 PF00528 Binding-protein-dependent transport system inner membrane component HRQ91_11540 PF07992 Pyridine nucleotide-disulphide oxidoreductase HRQ91_11545 PF03590 Aspartate-ammonia ligase HRQ91_11555 PF03737 Aldolase/RraA HRQ91_11560 PF00392 Bacterial regulatory proteins, gntR family HRQ91_11575 PF01381 Helix-turn-helix HRQ91_11610 PF13495 Phage integrase, N-terminal SAM-like domain HRQ91_11610 PF00589 Phage integrase family HRQ91_11620 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system HRQ91_11630 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HRQ91_11630 PF00117 Glutamine amidotransferase class-I HRQ91_11635 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HRQ91_11635 PF02142 MGS-like domain HRQ91_11635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HRQ91_11650 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HRQ91_11650 PF01926 50S ribosome-binding GTPase HRQ91_11655 PF05524 PEP-utilising enzyme, N-terminal HRQ91_11655 PF00391 PEP-utilising enzyme, mobile domain HRQ91_11655 PF02896 PEP-utilising enzyme, TIM barrel domain HRQ91_11660 PF00183 Hsp90 protein HRQ91_11670 PF00491 Arginase family HRQ91_11680 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system HRQ91_11685 PF03484 tRNA synthetase B5 domain HRQ91_11685 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HRQ91_11695 PF00696 Amino acid kinase family HRQ91_11695 PF00583 Acetyltransferase (GNAT) family HRQ91_11700 PF03989 DNA gyrase C-terminal domain, beta-propeller HRQ91_11700 PF00521 DNA gyrase/topoisomerase IV, subunit A HRQ91_11705 PF00986 DNA gyrase B subunit, carboxyl terminus HRQ91_11705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HRQ91_11705 PF00204 DNA gyrase B HRQ91_11705 PF01751 Toprim domain