locus-tag class description DYQ05_00005 PF11638 DnaA N-terminal domain DYQ05_00005 PF08299 Bacterial dnaA protein helix-turn-helix DYQ05_00005 PF00308 Bacterial dnaA protein DYQ05_00020 PF00152 tRNA synthetases class II (D, K and N) DYQ05_00020 PF01336 OB-fold nucleic acid binding domain DYQ05_00025 PF07943 Penicillin-binding protein 5, C-terminal domain DYQ05_00025 PF00768 D-alanyl-D-alanine carboxypeptidase DYQ05_00030 PF02570 Precorrin-8X methylmutase DYQ05_00040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_00040 PF00672 HAMP domain DYQ05_00040 PF02743 Cache domain DYQ05_00065 PF01545 Cation efflux family DYQ05_00065 PF16916 Dimerisation domain of Zinc Transporter DYQ05_00095 PF03023 Lipid II flippase MurJ DYQ05_00100 PF03616 Sodium/glutamate symporter DYQ05_00110 PF12671 Putative amidase domain DYQ05_00125 PF01192 RNA polymerase Rpb6 DYQ05_00130 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_00130 PF09820 Predicted AAA-ATPase DYQ05_00145 PF00691 OmpA family DYQ05_00150 PF12729 Four helix bundle sensory module for signal transduction DYQ05_00150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_00150 PF00672 HAMP domain DYQ05_00155 PF01546 Peptidase family M20/M25/M40 DYQ05_00155 PF07687 Peptidase dimerisation domain DYQ05_00160 PF00849 RNA pseudouridylate synthase DYQ05_00160 PF01479 S4 domain DYQ05_00165 PF04079 Segregation and condensation complex subunit ScpB DYQ05_00170 PF02616 Segregation and condensation protein ScpA DYQ05_00185 PF00391 PEP-utilising enzyme, mobile domain DYQ05_00185 PF02896 PEP-utilising enzyme, TIM barrel domain DYQ05_00200 PF13519 von Willebrand factor type A domain DYQ05_00210 PF00581 Rhodanese-like domain DYQ05_00220 PF01032 FecCD transport family DYQ05_00225 PF00005 ABC transporter DYQ05_00250 PF12804 MobA-like NTP transferase domain DYQ05_00255 PF02028 BCCT, betaine/carnitine/choline family transporter DYQ05_00265 PF09338 Glycine/sarcosine/betaine reductase component B subunits DYQ05_00270 PF02028 BCCT, betaine/carnitine/choline family transporter DYQ05_00275 PF01032 FecCD transport family DYQ05_00285 PF00300 Histidine phosphatase superfamily (branch 1) DYQ05_00300 PF01880 Desulfoferrodoxin DYQ05_00310 PF01554 MatE DYQ05_00345 PF05785 Rho-activating domain of cytotoxic necrotizing factor DYQ05_00345 PF18807 Tripartite Tc toxins repeat DYQ05_00610 PF00005 ABC transporter DYQ05_00615 PF00005 ABC transporter DYQ05_00615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_00620 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_00620 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_00625 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_00635 PF02311 AraC-like ligand binding domain DYQ05_00635 PF12833 Helix-turn-helix domain DYQ05_00640 PF02743 Cache domain DYQ05_00640 PF00672 HAMP domain DYQ05_00640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_00690 PF10609 NUBPL iron-transfer P-loop NTPase DYQ05_00700 PF01790 Prolipoprotein diacylglyceryl transferase DYQ05_00730 PF02390 Putative methyltransferase DYQ05_00755 PF09338 Glycine/sarcosine/betaine reductase component B subunits DYQ05_00760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_00760 PF02743 Cache domain DYQ05_00760 PF00672 HAMP domain DYQ05_00765 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_00765 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ05_00765 PF02861 Clp amino terminal domain, pathogenicity island component DYQ05_00765 PF17871 AAA lid domain DYQ05_00765 PF07724 AAA domain (Cdc48 subfamily) DYQ05_00770 PF02617 ATP-dependent Clp protease adaptor protein ClpS DYQ05_00780 PF02677 Epoxyqueuosine reductase QueH DYQ05_00810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ05_00810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYQ05_00815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ05_00815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYQ05_00820 PF01479 S4 domain DYQ05_00820 PF00163 Ribosomal protein S4/S9 N-terminal domain DYQ05_00835 PF00166 Chaperonin 10 Kd subunit DYQ05_00840 PF00140 Sigma-70 factor, region 1.2 DYQ05_00840 PF04542 Sigma-70 region 2 DYQ05_00840 PF04545 Sigma-70, region 4 DYQ05_00840 PF04539 Sigma-70 region 3 DYQ05_00840 PF03979 Sigma-70 factor, region 1.1 DYQ05_00845 PF01171 PP-loop family DYQ05_00855 PF13180 PDZ domain DYQ05_00860 PF13026 Protein of unknown function (DUF3887) DYQ05_00860 PF12146 Serine aminopeptidase, S33 DYQ05_00865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DYQ05_00865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DYQ05_00880 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ05_00885 PF13173 AAA domain DYQ05_00885 PF13635 Domain of unknown function (DUF4143) DYQ05_00890 PF00132 Bacterial transferase hexapeptide (six repeats) DYQ05_00900 PF02719 Polysaccharide biosynthesis protein DYQ05_00905 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ05_00925 PF02350 UDP-N-acetylglucosamine 2-epimerase DYQ05_00930 PF02911 Formyl transferase, C-terminal domain DYQ05_00930 PF00551 Formyl transferase DYQ05_00950 PF08666 SAF domain DYQ05_00950 PF03102 NeuB family DYQ05_00955 PF02348 Cytidylyltransferase DYQ05_00960 PF00483 Nucleotidyl transferase DYQ05_00985 PF02350 UDP-N-acetylglucosamine 2-epimerase DYQ05_00990 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYQ05_00990 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYQ05_00990 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYQ05_01005 PF04991 LicD family DYQ05_01015 PF01757 Acyltransferase family DYQ05_01025 PF00483 Nucleotidyl transferase DYQ05_01030 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DYQ05_01035 PF04321 RmlD substrate binding domain DYQ05_01040 PF16363 GDP-mannose 4,6 dehydratase DYQ05_01050 PF03313 Serine dehydratase alpha chain DYQ05_01055 PF01842 ACT domain DYQ05_01055 PF03315 Serine dehydratase beta chain DYQ05_01060 PF05525 Branched-chain amino acid transport protein DYQ05_01075 PF04055 Radical SAM superfamily DYQ05_01075 PF00919 Uncharacterized protein family UPF0004 DYQ05_01145 PF13742 OB-fold nucleic acid binding domain DYQ05_01145 PF02601 Exonuclease VII, large subunit DYQ05_01155 PF00005 ABC transporter DYQ05_01160 PF03390 2-hydroxycarboxylate transporter family DYQ05_01165 PF13407 Periplasmic binding protein domain DYQ05_01165 PF18610 Periplasmic binding protein domain DYQ05_01175 PF00534 Glycosyl transferases group 1 DYQ05_01175 PF13439 Glycosyltransferase Family 4 DYQ05_01180 PF00005 ABC transporter DYQ05_01180 PF08402 TOBE domain DYQ05_01185 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_01190 PF00113 Enolase, C-terminal TIM barrel domain DYQ05_01190 PF03952 Enolase, N-terminal domain DYQ05_01200 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_01205 PF00005 ABC transporter DYQ05_01250 PF02254 TrkA-N domain DYQ05_01250 PF02080 TrkA-C domain DYQ05_01255 PF03989 DNA gyrase C-terminal domain, beta-propeller DYQ05_01255 PF00521 DNA gyrase/topoisomerase IV, subunit A DYQ05_01260 PF00117 Glutamine amidotransferase class-I DYQ05_01260 PF06418 CTP synthase N-terminus DYQ05_01275 PF00596 Class II Aldolase and Adducin N-terminal domain DYQ05_01280 PF00072 Response regulator receiver domain DYQ05_01285 PF02631 RecX family DYQ05_01290 PF00380 Ribosomal protein S9/S16 DYQ05_01295 PF00572 Ribosomal protein L13 DYQ05_01305 PF00754 F5/8 type C domain DYQ05_01305 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase DYQ05_01305 PF13088 BNR repeat-like domain DYQ05_01315 PF02743 Cache domain DYQ05_01315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_01315 PF00672 HAMP domain DYQ05_01325 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DYQ05_01335 PF16811 TRAP transporter T-component DYQ05_01350 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DYQ05_01355 PF00005 ABC transporter DYQ05_01360 PF00005 ABC transporter DYQ05_01365 PF00005 ABC transporter DYQ05_01435 PF01547 Bacterial extracellular solute-binding protein DYQ05_01445 PF08402 TOBE domain DYQ05_01445 PF00005 ABC transporter DYQ05_01465 PF00005 ABC transporter DYQ05_01470 PF02632 BioY family DYQ05_01485 PF00571 CBS domain DYQ05_01485 PF00478 IMP dehydrogenase / GMP reductase domain DYQ05_01500 PF01470 Pyroglutamyl peptidase DYQ05_01510 PF13419 Haloacid dehalogenase-like hydrolase DYQ05_01520 PF03781 Sulfatase-modifying factor enzyme 1 DYQ05_01525 PF00072 Response regulator receiver domain DYQ05_01525 PF00196 Bacterial regulatory proteins, luxR family DYQ05_01530 PF02254 TrkA-N domain DYQ05_01530 PF02080 TrkA-C domain DYQ05_01535 PF02386 Cation transport protein DYQ05_01565 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DYQ05_01565 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DYQ05_01585 PF02881 SRP54-type protein, helical bundle domain DYQ05_01585 PF00448 SRP54-type protein, GTPase domain DYQ05_01585 PF02978 Signal peptide binding domain DYQ05_01595 PF00465 Iron-containing alcohol dehydrogenase DYQ05_01605 PF02223 Thymidylate kinase DYQ05_01615 PF08546 Ketopantoate reductase PanE/ApbA C terminal DYQ05_01615 PF02558 Ketopantoate reductase PanE/ApbA DYQ05_01630 PF01103 Surface antigen DYQ05_01630 PF07244 Surface antigen variable number repeat DYQ05_01640 PF05188 MutS domain II DYQ05_01640 PF05192 MutS domain III DYQ05_01640 PF05190 MutS family domain IV DYQ05_01640 PF01624 MutS domain I DYQ05_01640 PF00488 MutS domain V DYQ05_01650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYQ05_01655 PF02504 Fatty acid synthesis protein DYQ05_01675 PF13847 Methyltransferase domain DYQ05_01690 PF03687 Uncharacterised protein family (UPF0164) DYQ05_01730 PF00005 ABC transporter DYQ05_01730 PF00664 ABC transporter transmembrane region DYQ05_01745 PF01979 Amidohydrolase family DYQ05_01750 PF07075 Protein of unknown function (DUF1343) DYQ05_01755 PF00144 Beta-lactamase DYQ05_01770 PF00989 PAS fold DYQ05_01770 PF00158 Sigma-54 interaction domain DYQ05_01770 PF02954 Bacterial regulatory protein, Fis family DYQ05_01785 PF00005 ABC transporter DYQ05_01805 PF07664 Ferrous iron transport protein B C terminus DYQ05_01805 PF02421 Ferrous iron transport protein B DYQ05_01805 PF07670 Nucleoside recognition DYQ05_01805 PF17910 FeoB cytosolic helical domain DYQ05_01805 PF04023 FeoA domain DYQ05_01840 PF09382 RQC domain DYQ05_01840 PF00570 HRDC domain DYQ05_01840 PF00271 Helicase conserved C-terminal domain DYQ05_01840 PF00270 DEAD/DEAH box helicase DYQ05_01840 PF16124 RecQ zinc-binding DYQ05_01870 PF00149 Calcineurin-like phosphoesterase DYQ05_01870 PF02872 5'-nucleotidase, C-terminal domain DYQ05_01885 PF01168 Alanine racemase, N-terminal domain DYQ05_01895 PF01330 RuvA N terminal domain DYQ05_01900 PF02075 Crossover junction endodeoxyribonuclease RuvC DYQ05_01915 PF00958 GMP synthase C terminal domain DYQ05_01915 PF00117 Glutamine amidotransferase class-I DYQ05_01915 PF01171 PP-loop family DYQ05_01925 PF00145 C-5 cytosine-specific DNA methylase DYQ05_01930 PF09561 HpaII restriction endonuclease DYQ05_01935 PF04480 Protein of unknown function (DUF559) DYQ05_01935 PF03852 DNA mismatch endonuclease Vsr DYQ05_01940 PF07475 HPr Serine kinase C-terminal domain DYQ05_01940 PF02603 HPr Serine kinase N terminus DYQ05_01945 PF00381 PTS HPr component phosphorylation site DYQ05_01960 PF02687 FtsX-like permease family DYQ05_01960 PF00005 ABC transporter DYQ05_01960 PF12704 MacB-like periplasmic core domain DYQ05_01965 PF02687 FtsX-like permease family DYQ05_01965 PF00005 ABC transporter DYQ05_01965 PF12704 MacB-like periplasmic core domain DYQ05_01970 PF00152 tRNA synthetases class II (D, K and N) DYQ05_01975 PF00403 Heavy-metal-associated domain DYQ05_01980 PF10458 Valyl tRNA synthetase tRNA binding arm DYQ05_01980 PF08264 Anticodon-binding domain of tRNA DYQ05_01980 PF00133 tRNA synthetases class I (I, L, M and V) DYQ05_01985 PF00664 ABC transporter transmembrane region DYQ05_01985 PF00005 ABC transporter DYQ05_01995 PF01042 Endoribonuclease L-PSP DYQ05_02000 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYQ05_02000 PF00588 SpoU rRNA Methylase family DYQ05_02010 PF00829 Ribosomal prokaryotic L21 protein DYQ05_02020 PF01016 Ribosomal L27 protein DYQ05_02025 PF01926 50S ribosome-binding GTPase DYQ05_02025 PF01018 GTP1/OBG DYQ05_02030 PF01467 Cytidylyltransferase-like DYQ05_02050 PF01869 BadF/BadG/BcrA/BcrD ATPase family DYQ05_02055 PF02743 Cache domain DYQ05_02055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_02055 PF00672 HAMP domain DYQ05_02100 PF00471 Ribosomal protein L33 DYQ05_02110 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DYQ05_02115 PF02357 Transcription termination factor nusG DYQ05_02115 PF00467 KOW motif DYQ05_02120 PF00298 Ribosomal protein L11, RNA binding domain DYQ05_02120 PF03946 Ribosomal protein L11, N-terminal domain DYQ05_02125 PF00687 Ribosomal protein L1p/L10e family DYQ05_02130 PF00466 Ribosomal protein L10 DYQ05_02135 PF00542 Ribosomal protein L7/L12 C-terminal domain DYQ05_02135 PF16320 Ribosomal protein L7/L12 dimerisation domain DYQ05_02140 PF10385 RNA polymerase beta subunit external 1 domain DYQ05_02140 PF04560 RNA polymerase Rpb2, domain 7 DYQ05_02140 PF00562 RNA polymerase Rpb2, domain 6 DYQ05_02140 PF04565 RNA polymerase Rpb2, domain 3 DYQ05_02140 PF04563 RNA polymerase beta subunit DYQ05_02140 PF04561 RNA polymerase Rpb2, domain 2 DYQ05_02145 PF04998 RNA polymerase Rpb1, domain 5 DYQ05_02145 PF00623 RNA polymerase Rpb1, domain 2 DYQ05_02145 PF05000 RNA polymerase Rpb1, domain 4 DYQ05_02145 PF04997 RNA polymerase Rpb1, domain 1 DYQ05_02145 PF04983 RNA polymerase Rpb1, domain 3 DYQ05_02175 PF02073 Thermophilic metalloprotease (M29) DYQ05_02180 PF00266 Aminotransferase class-V DYQ05_02200 PF03129 Anticodon binding domain DYQ05_02200 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYQ05_02200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ05_02205 PF07730 Histidine kinase DYQ05_02210 PF00270 DEAD/DEAH box helicase DYQ05_02210 PF04408 Helicase associated domain (HA2) DYQ05_02210 PF00271 Helicase conserved C-terminal domain DYQ05_02210 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DYQ05_02220 PF01268 Formate--tetrahydrofolate ligase DYQ05_02225 PF00756 Putative esterase DYQ05_02225 PF01476 LysM domain DYQ05_02230 PF05343 M42 glutamyl aminopeptidase DYQ05_02245 PF00501 AMP-binding enzyme DYQ05_02255 PF17932 Tetracyclin repressor-like, C-terminal domain DYQ05_02255 PF00440 Bacterial regulatory proteins, tetR family DYQ05_02260 PF03616 Sodium/glutamate symporter DYQ05_02265 PF00664 ABC transporter transmembrane region DYQ05_02265 PF00005 ABC transporter DYQ05_02280 PF00005 ABC transporter DYQ05_02285 PF00005 ABC transporter DYQ05_02285 PF00664 ABC transporter transmembrane region DYQ05_02285 PF04954 Siderophore-interacting protein DYQ05_02285 PF08021 Siderophore-interacting FAD-binding domain DYQ05_02300 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_02300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_02305 PF01813 ATP synthase subunit D DYQ05_02320 PF13277 YmdB-like protein DYQ05_02335 PF03477 ATP cone domain DYQ05_02335 PF02867 Ribonucleotide reductase, barrel domain DYQ05_02335 PF00317 Ribonucleotide reductase, all-alpha domain DYQ05_02340 PF00266 Aminotransferase class-V DYQ05_02345 PF01761 3-dehydroquinate synthase DYQ05_02350 PF01048 Phosphorylase superfamily DYQ05_02355 PF01595 Cyclin M transmembrane N-terminal domain DYQ05_02355 PF03471 Transporter associated domain DYQ05_02355 PF00571 CBS domain DYQ05_02375 PF00005 ABC transporter DYQ05_02375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_02380 PF00005 ABC transporter DYQ05_02380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_02385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_02390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_02395 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_02395 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_02400 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_02425 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_02430 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_02455 PF01081 KDPG and KHG aldolase DYQ05_02475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_02475 PF12729 Four helix bundle sensory module for signal transduction DYQ05_02475 PF00672 HAMP domain DYQ05_02490 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYQ05_02490 PF00072 Response regulator receiver domain DYQ05_02490 PF01627 Hpt domain DYQ05_02490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ05_02490 PF00512 His Kinase A (phospho-acceptor) domain DYQ05_02490 PF00672 HAMP domain DYQ05_02495 PF00072 Response regulator receiver domain DYQ05_02505 PF08241 Methyltransferase domain DYQ05_02520 PF00753 Metallo-beta-lactamase superfamily DYQ05_02530 PF00075 RNase H DYQ05_02535 PF00793 DAHP synthetase I family DYQ05_02540 PF02568 Thiamine biosynthesis protein (ThiI) DYQ05_02540 PF02926 THUMP domain DYQ05_02550 PF00005 ABC transporter DYQ05_02565 PF12169 DNA polymerase III subunits gamma and tau domain III DYQ05_02575 PF00183 Hsp90 protein DYQ05_02595 PF03979 Sigma-70 factor, region 1.1 DYQ05_02595 PF04545 Sigma-70, region 4 DYQ05_02595 PF04542 Sigma-70 region 2 DYQ05_02595 PF00140 Sigma-70 factor, region 1.2 DYQ05_02595 PF04539 Sigma-70 region 3 DYQ05_02615 PF01812 5-formyltetrahydrofolate cyclo-ligase family DYQ05_02620 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYQ05_02635 PF00080 Copper/zinc superoxide dismutase (SODC) DYQ05_02645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_02645 PF07196 Flagellin hook IN motif DYQ05_02650 PF00669 Bacterial flagellin N-terminal helical region DYQ05_02650 PF07196 Flagellin hook IN motif DYQ05_02650 PF00700 Bacterial flagellin C-terminal helical region DYQ05_02655 PF00672 HAMP domain DYQ05_02655 PF02743 Cache domain DYQ05_02655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_02670 PF01026 TatD related DNase DYQ05_02675 PF01207 Dihydrouridine synthase (Dus) DYQ05_02685 PF00211 Adenylate and Guanylate cyclase catalytic domain DYQ05_02690 PF00258 Flavodoxin DYQ05_02705 PF01066 CDP-alcohol phosphatidyltransferase DYQ05_02710 PF00953 Glycosyl transferase family 4 DYQ05_02715 PF00448 SRP54-type protein, GTPase domain DYQ05_02720 PF10609 NUBPL iron-transfer P-loop NTPase DYQ05_02730 PF04539 Sigma-70 region 3 DYQ05_02730 PF04542 Sigma-70 region 2 DYQ05_02730 PF04545 Sigma-70, region 4 DYQ05_02760 PF00268 Ribonucleotide reductase, small chain DYQ05_02765 PF01594 AI-2E family transporter DYQ05_02770 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DYQ05_02785 PF01791 DeoC/LacD family aldolase DYQ05_02790 PF09820 Predicted AAA-ATPase DYQ05_02790 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_02795 PF03009 Glycerophosphoryl diester phosphodiesterase family DYQ05_02800 PF00156 Phosphoribosyl transferase domain DYQ05_02805 PF00750 tRNA synthetases class I (R) DYQ05_02805 PF05746 DALR anticodon binding domain DYQ05_02805 PF03485 Arginyl tRNA synthetase N terminal domain DYQ05_02810 PF17863 AAA lid domain DYQ05_02810 PF07726 ATPase family associated with various cellular activities (AAA) DYQ05_02870 PF01554 MatE DYQ05_02875 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DYQ05_02880 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DYQ05_02880 PF14572 Phosphoribosyl synthetase-associated domain DYQ05_02890 PF00813 FliP family DYQ05_02900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DYQ05_02900 PF04509 CheC-like family DYQ05_02905 PF02154 Flagellar motor switch protein FliM DYQ05_02905 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DYQ05_02910 PF03748 Flagellar basal body-associated protein FliL DYQ05_02915 PF00691 OmpA family DYQ05_02915 PF13677 Membrane MotB of proton-channel complex MotA/MotB DYQ05_02920 PF01618 MotA/TolQ/ExbB proton channel family DYQ05_02930 PF00460 Flagella basal body rod protein DYQ05_02930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_02930 PF07559 Flagellar basal body protein FlaE DYQ05_02935 PF03963 Flagellar hook capping protein - N-terminal region DYQ05_02945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_02950 PF11761 Cobalamin biosynthesis central region DYQ05_02950 PF11760 Cobalamin synthesis G N-terminal DYQ05_02950 PF01890 Cobalamin synthesis G C-terminus DYQ05_02965 PF00005 ABC transporter DYQ05_02975 PF05656 Protein of unknown function (DUF805) DYQ05_02985 PF12705 PD-(D/E)XK nuclease superfamily DYQ05_03005 PF00950 ABC 3 transport family DYQ05_03030 PF14492 Elongation Factor G, domain II DYQ05_03030 PF00009 Elongation factor Tu GTP binding domain DYQ05_03030 PF03144 Elongation factor Tu domain 2 DYQ05_03030 PF03764 Elongation factor G, domain IV DYQ05_03030 PF00679 Elongation factor G C-terminus DYQ05_03060 PF02926 THUMP domain DYQ05_03060 PF01170 Putative RNA methylase family UPF0020 DYQ05_03075 PF00005 ABC transporter DYQ05_03075 PF03412 Peptidase C39 family DYQ05_03075 PF00664 ABC transporter transmembrane region DYQ05_03080 PF00005 ABC transporter DYQ05_03080 PF00664 ABC transporter transmembrane region DYQ05_03120 PF02086 D12 class N6 adenine-specific DNA methyltransferase DYQ05_03125 PF02086 D12 class N6 adenine-specific DNA methyltransferase DYQ05_03155 PF00005 ABC transporter DYQ05_03170 PF10127 RNA repair pathway DNA polymerase beta family DYQ05_03195 PF00149 Calcineurin-like phosphoesterase DYQ05_03195 PF02872 5'-nucleotidase, C-terminal domain DYQ05_03205 PF08544 GHMP kinases C terminal DYQ05_03205 PF00288 GHMP kinases N terminal domain DYQ05_03205 PF10509 Galactokinase galactose-binding signature DYQ05_03210 PF00342 Phosphoglucose isomerase DYQ05_03215 PF01926 50S ribosome-binding GTPase DYQ05_03225 PF00501 AMP-binding enzyme DYQ05_03225 PF13193 AMP-binding enzyme C-terminal domain DYQ05_03250 PF01409 tRNA synthetases class II core domain (F) DYQ05_03260 PF07687 Peptidase dimerisation domain DYQ05_03260 PF01546 Peptidase family M20/M25/M40 DYQ05_03280 PF00005 ABC transporter DYQ05_03310 PF09827 CRISPR associated protein Cas2 DYQ05_03320 PF18541 RuvC endonuclease subdomain 3 DYQ05_03320 PF13395 HNH endonuclease DYQ05_03320 PF18061 CRISPR-Cas9 WED domain DYQ05_03320 PF18070 CRISPR-Cas9 PI domain DYQ05_03320 PF18470 Cas9 alpha-helical lobe domain DYQ05_03335 PF00664 ABC transporter transmembrane region DYQ05_03335 PF00005 ABC transporter DYQ05_03350 PF00005 ABC transporter DYQ05_03360 PF12833 Helix-turn-helix domain DYQ05_03360 PF02311 AraC-like ligand binding domain DYQ05_03385 PF04607 Region found in RelA / SpoT proteins DYQ05_03390 PF00883 Cytosol aminopeptidase family, catalytic domain DYQ05_03390 PF02789 Cytosol aminopeptidase family, N-terminal domain DYQ05_03410 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DYQ05_03415 PF00664 ABC transporter transmembrane region DYQ05_03415 PF00005 ABC transporter DYQ05_03425 PF03448 MgtE intracellular N domain DYQ05_03425 PF00571 CBS domain DYQ05_03425 PF01769 Divalent cation transporter DYQ05_03455 PF12344 Ultra-violet resistance protein B DYQ05_03455 PF17757 UvrB interaction domain DYQ05_03455 PF04851 Type III restriction enzyme, res subunit DYQ05_03455 PF02151 UvrB/uvrC motif DYQ05_03455 PF00271 Helicase conserved C-terminal domain DYQ05_03485 PF00326 Prolyl oligopeptidase family DYQ05_03485 PF07676 WD40-like Beta Propeller Repeat DYQ05_03495 PF01979 Amidohydrolase family DYQ05_03505 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DYQ05_03505 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DYQ05_03505 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DYQ05_03515 PF01204 Trehalase DYQ05_03520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ05_03520 PF03129 Anticodon binding domain DYQ05_03540 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYQ05_03540 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ05_03560 PF02557 D-alanyl-D-alanine carboxypeptidase DYQ05_03565 PF01740 STAS domain DYQ05_03580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DYQ05_03580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYQ05_03585 PF00326 Prolyl oligopeptidase family DYQ05_03585 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DYQ05_03590 PF03960 ArsC family DYQ05_03605 PF01725 Ham1 family DYQ05_03610 PF01207 Dihydrouridine synthase (Dus) DYQ05_03615 PF01235 Sodium:alanine symporter family DYQ05_03620 PF00708 Acylphosphatase DYQ05_03640 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYQ05_03640 PF00128 Alpha amylase, catalytic domain DYQ05_03650 PF00375 Sodium:dicarboxylate symporter family DYQ05_03655 PF00291 Pyridoxal-phosphate dependent enzyme DYQ05_03665 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYQ05_03670 PF13180 PDZ domain DYQ05_03675 PF01139 tRNA-splicing ligase RtcB DYQ05_03680 PF00464 Serine hydroxymethyltransferase DYQ05_03685 PF09334 tRNA synthetases class I (M) DYQ05_03685 PF01588 Putative tRNA binding domain DYQ05_03690 PF03099 Biotin/lipoate A/B protein ligase family DYQ05_03690 PF10437 Bacterial lipoate protein ligase C-terminus DYQ05_03695 PF04055 Radical SAM superfamily DYQ05_03695 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DYQ05_03700 PF01841 Transglutaminase-like superfamily DYQ05_03715 PF01406 tRNA synthetases class I (C) catalytic domain DYQ05_03715 PF09190 DALR domain DYQ05_03720 PF01145 SPFH domain / Band 7 family DYQ05_03725 PF01145 SPFH domain / Band 7 family DYQ05_03730 PF01226 Formate/nitrite transporter DYQ05_03735 PF02768 DNA polymerase III beta subunit, C-terminal domain DYQ05_03735 PF02767 DNA polymerase III beta subunit, central domain DYQ05_03735 PF00712 DNA polymerase III beta subunit, N-terminal domain DYQ05_03740 PF02463 RecF/RecN/SMC N terminal domain DYQ05_03745 PF13649 Methyltransferase domain DYQ05_03775 PF01430 Hsp33 protein DYQ05_03785 PF02547 Queuosine biosynthesis protein DYQ05_03800 PF00005 ABC transporter DYQ05_03810 PF00133 tRNA synthetases class I (I, L, M and V) DYQ05_03810 PF08264 Anticodon-binding domain of tRNA DYQ05_03815 PF04225 Opacity-associated protein A LysM-like domain DYQ05_03815 PF01551 Peptidase family M23 DYQ05_03825 PF03885 Protein of unknown function (DUF327) DYQ05_03830 PF04468 PSP1 C-terminal conserved region DYQ05_03845 PF03824 High-affinity nickel-transport protein DYQ05_03855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_03855 PF02743 Cache domain DYQ05_03855 PF00672 HAMP domain DYQ05_03860 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DYQ05_03860 PF10371 Domain of unknown function DYQ05_03860 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DYQ05_03860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYQ05_03860 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DYQ05_03865 PF00005 ABC transporter DYQ05_03865 PF00664 ABC transporter transmembrane region DYQ05_03870 PF00005 ABC transporter DYQ05_03870 PF00664 ABC transporter transmembrane region DYQ05_03870 PF03412 Peptidase C39 family DYQ05_03880 PF14524 Wzt C-terminal domain DYQ05_03880 PF00005 ABC transporter DYQ05_03885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYQ05_03885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYQ05_03885 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DYQ05_03885 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DYQ05_03890 PF00730 HhH-GPD superfamily base excision DNA repair protein DYQ05_03895 PF01580 FtsK/SpoIIIE family DYQ05_03895 PF09397 Ftsk gamma domain DYQ05_03895 PF17854 FtsK alpha domain DYQ05_03900 PF02673 Bacitracin resistance protein BacA DYQ05_03910 PF07685 CobB/CobQ-like glutamine amidotransferase domain DYQ05_03915 PF01134 Glucose inhibited division protein A DYQ05_03915 PF13932 GidA associated domain DYQ05_03920 PF02127 Aminopeptidase I zinc metalloprotease (M18) DYQ05_03930 PF03030 Inorganic H+ pyrophosphatase DYQ05_03935 PF00210 Ferritin-like domain DYQ05_03940 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DYQ05_03940 PF00326 Prolyl oligopeptidase family DYQ05_03950 PF13167 GTP-binding GTPase N-terminal DYQ05_03950 PF01926 50S ribosome-binding GTPase DYQ05_03950 PF16360 GTP-binding GTPase Middle Region DYQ05_03955 PF08543 Phosphomethylpyrimidine kinase DYQ05_03960 PF01969 Protein of unknown function DUF111 DYQ05_03970 PF02971 Formiminotransferase domain DYQ05_03970 PF07837 Formiminotransferase domain, N-terminal subdomain DYQ05_03975 PF00155 Aminotransferase class I and II DYQ05_03990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_04000 PF01048 Phosphorylase superfamily DYQ05_04005 PF00271 Helicase conserved C-terminal domain DYQ05_04005 PF17191 RecG wedge domain DYQ05_04005 PF00270 DEAD/DEAH box helicase DYQ05_04010 PF07683 Cobalamin synthesis protein cobW C-terminal domain DYQ05_04010 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYQ05_04015 PF00107 Zinc-binding dehydrogenase DYQ05_04015 PF08240 Alcohol dehydrogenase GroES-like domain DYQ05_04020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_04020 PF00005 ABC transporter DYQ05_04025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_04025 PF00005 ABC transporter DYQ05_04030 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_04030 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_04035 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_04040 PF00274 Fructose-bisphosphate aldolase class-I DYQ05_04045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYQ05_04045 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_04055 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DYQ05_04065 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DYQ05_04075 PF01963 TraB family DYQ05_04090 PF04024 PspC domain DYQ05_04095 PF02561 Flagellar protein FliS DYQ05_04110 PF00672 HAMP domain DYQ05_04110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_04125 PF08003 Protein of unknown function (DUF1698) DYQ05_04130 PF04191 Phospholipid methyltransferase DYQ05_04135 PF00005 ABC transporter DYQ05_04135 PF00664 ABC transporter transmembrane region DYQ05_04150 PF01497 Periplasmic binding protein DYQ05_04160 PF00005 ABC transporter DYQ05_04165 PF01032 FecCD transport family DYQ05_04170 PF08241 Methyltransferase domain DYQ05_04240 PF17239 Family of unknown function (DUF5312) DYQ05_04260 PF01180 Dihydroorotate dehydrogenase DYQ05_04275 PF03773 Predicted permease DYQ05_04285 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYQ05_04285 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYQ05_04285 PF14579 Helix-hairpin-helix motif DYQ05_04285 PF02811 PHP domain DYQ05_04295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_04295 PF00672 HAMP domain DYQ05_04295 PF02743 Cache domain DYQ05_04300 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_04300 PF04324 BFD-like [2Fe-2S] binding domain DYQ05_04305 PF00005 ABC transporter DYQ05_04325 PF01171 PP-loop family DYQ05_04330 PF01925 Sulfite exporter TauE/SafE DYQ05_04340 PF02082 Transcriptional regulator DYQ05_04345 PF13460 NAD(P)H-binding DYQ05_04350 PF03102 NeuB family DYQ05_04350 PF08666 SAF domain DYQ05_04365 PF11798 IMS family HHH motif DYQ05_04365 PF00817 impB/mucB/samB family DYQ05_04365 PF11799 impB/mucB/samB family C-terminal domain DYQ05_04390 PF00005 ABC transporter DYQ05_04410 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYQ05_04410 PF00037 4Fe-4S binding domain DYQ05_04410 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DYQ05_04415 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DYQ05_04415 PF00037 4Fe-4S binding domain DYQ05_04415 PF02256 Iron hydrogenase small subunit DYQ05_04415 PF02906 Iron only hydrogenase large subunit, C-terminal domain DYQ05_04430 PF03062 MBOAT, membrane-bound O-acyltransferase family DYQ05_04435 PF00005 ABC transporter DYQ05_04440 PF00210 Ferritin-like domain DYQ05_04445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_04445 PF00672 HAMP domain DYQ05_04445 PF02743 Cache domain DYQ05_04465 PF01206 Sulfurtransferase TusA DYQ05_04490 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_04495 PF00005 ABC transporter DYQ05_04505 PF00005 ABC transporter DYQ05_04510 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component DYQ05_04530 PF00436 Single-strand binding protein family DYQ05_04535 PF00731 AIR carboxylase DYQ05_04540 PF03600 Citrate transporter DYQ05_04555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_04560 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_04565 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_04565 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_04570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_04570 PF00005 ABC transporter DYQ05_04575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_04575 PF00005 ABC transporter DYQ05_04580 PF00664 ABC transporter transmembrane region DYQ05_04580 PF00005 ABC transporter DYQ05_04605 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_04605 PF09820 Predicted AAA-ATPase DYQ05_04610 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DYQ05_04610 PF01138 3' exoribonuclease family, domain 1 DYQ05_04610 PF00575 S1 RNA binding domain DYQ05_04610 PF03725 3' exoribonuclease family, domain 2 DYQ05_04610 PF00013 KH domain DYQ05_04615 PF00312 Ribosomal protein S15 DYQ05_04620 PF01687 Riboflavin kinase DYQ05_04620 PF06574 FAD synthetase DYQ05_04625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_04625 PF00672 HAMP domain DYQ05_04625 PF02743 Cache domain DYQ05_04650 PF00899 ThiF family DYQ05_04655 PF00953 Glycosyl transferase family 4 DYQ05_04665 PF00860 Permease family DYQ05_04680 PF01926 50S ribosome-binding GTPase DYQ05_04680 PF12631 MnmE helical domain DYQ05_04680 PF10396 GTP-binding protein TrmE N-terminus DYQ05_04690 PF10502 Signal peptidase, peptidase S26 DYQ05_04705 PF04055 Radical SAM superfamily DYQ05_04705 PF18693 TRAM domain DYQ05_04705 PF00919 Uncharacterized protein family UPF0004 DYQ05_04720 PF00672 HAMP domain DYQ05_04720 PF00211 Adenylate and Guanylate cyclase catalytic domain DYQ05_04730 PF13419 Haloacid dehalogenase-like hydrolase DYQ05_04735 PF13193 AMP-binding enzyme C-terminal domain DYQ05_04735 PF00501 AMP-binding enzyme DYQ05_04740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_04750 PF01661 Macro domain DYQ05_04765 PF00005 ABC transporter DYQ05_04780 PF00145 C-5 cytosine-specific DNA methylase DYQ05_04780 PF01381 Helix-turn-helix DYQ05_04785 PF01434 Peptidase family M41 DYQ05_04785 PF17862 AAA+ lid domain DYQ05_04785 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_04785 PF06480 FtsH Extracellular DYQ05_04800 PF07669 Eco57I restriction-modification methylase DYQ05_04860 PF03069 Acetamidase/Formamidase family DYQ05_04905 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYQ05_04905 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYQ05_04915 PF02540 NAD synthase DYQ05_04920 PF00005 ABC transporter DYQ05_04920 PF00664 ABC transporter transmembrane region DYQ05_04925 PF00664 ABC transporter transmembrane region DYQ05_04925 PF00005 ABC transporter DYQ05_04930 PF00664 ABC transporter transmembrane region DYQ05_04930 PF00005 ABC transporter DYQ05_04945 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DYQ05_04945 PF12557 Cob(I)alamin adenosyltransferase N terminal DYQ05_04950 PF17762 HTH domain found in ParB protein DYQ05_04950 PF02195 ParB-like nuclease domain DYQ05_04955 PF13614 AAA domain DYQ05_04960 PF00672 HAMP domain DYQ05_04960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_04960 PF02743 Cache domain DYQ05_04970 PF07729 FCD domain DYQ05_04970 PF00392 Bacterial regulatory proteins, gntR family DYQ05_04980 PF00364 Biotin-requiring enzyme DYQ05_04980 PF00682 HMGL-like DYQ05_04980 PF02436 Conserved carboxylase domain DYQ05_04990 PF00364 Biotin-requiring enzyme DYQ05_04995 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DYQ05_05000 PF06857 Malonate decarboxylase delta subunit (MdcD) DYQ05_05005 PF03328 HpcH/HpaI aldolase/citrate lyase family DYQ05_05010 PF04223 Citrate lyase, alpha subunit (CitF) DYQ05_05025 PF01343 Peptidase family S49 DYQ05_05030 PF06071 Protein of unknown function (DUF933) DYQ05_05030 PF01926 50S ribosome-binding GTPase DYQ05_05045 PF08245 Mur ligase middle domain DYQ05_05045 PF02875 Mur ligase family, glutamate ligase domain DYQ05_05050 PF02608 ABC transporter substrate-binding protein PnrA-like DYQ05_05055 PF00005 ABC transporter DYQ05_05060 PF02653 Branched-chain amino acid transport system / permease component DYQ05_05065 PF02653 Branched-chain amino acid transport system / permease component DYQ05_05070 PF13941 MutL protein DYQ05_05075 PF02310 B12 binding domain DYQ05_05085 PF00005 ABC transporter DYQ05_05085 PF00664 ABC transporter transmembrane region DYQ05_05090 PF01266 FAD dependent oxidoreductase DYQ05_05110 PF01515 Phosphate acetyl/butaryl transferase DYQ05_05115 PF13176 Tetratricopeptide repeat DYQ05_05115 PF13174 Tetratricopeptide repeat DYQ05_05120 PF01432 Peptidase family M3 DYQ05_05120 PF08439 Oligopeptidase F DYQ05_05125 PF17871 AAA lid domain DYQ05_05125 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ05_05125 PF02861 Clp amino terminal domain, pathogenicity island component DYQ05_05125 PF07724 AAA domain (Cdc48 subfamily) DYQ05_05125 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_05130 PF01202 Shikimate kinase DYQ05_05140 PF01416 tRNA pseudouridine synthase DYQ05_05145 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) DYQ05_05150 PF01680 SOR/SNZ family DYQ05_05165 PF01066 CDP-alcohol phosphatidyltransferase DYQ05_05175 PF00672 HAMP domain DYQ05_05175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_05180 PF06689 ClpX C4-type zinc finger DYQ05_05180 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ05_05180 PF07724 AAA domain (Cdc48 subfamily) DYQ05_05190 PF05697 Bacterial trigger factor protein (TF) DYQ05_05190 PF05698 Bacterial trigger factor protein (TF) C-terminus DYQ05_05190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ05_05205 PF00155 Aminotransferase class I and II DYQ05_05220 PF00072 Response regulator receiver domain DYQ05_05230 PF01584 CheW-like domain DYQ05_05235 PF02895 Signal transducing histidine kinase, homodimeric domain DYQ05_05235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ05_05235 PF07194 P2 response regulator binding domain DYQ05_05235 PF01584 CheW-like domain DYQ05_05235 PF01627 Hpt domain DYQ05_05250 PF00814 Glycoprotease family DYQ05_05265 PF01106 NifU-like domain DYQ05_05265 PF01521 Iron-sulphur cluster biosynthesis DYQ05_05270 PF00692 dUTPase DYQ05_05275 PF16258 Domain of unknown function (DUF4912) DYQ05_05285 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DYQ05_05285 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_05290 PF00175 Oxidoreductase NAD-binding domain DYQ05_05290 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DYQ05_05290 PF00970 Oxidoreductase FAD-binding domain DYQ05_05305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ05_05315 PF00111 2Fe-2S iron-sulfur cluster binding domain DYQ05_05315 PF01799 [2Fe-2S] binding domain DYQ05_05320 PF03450 CO dehydrogenase flavoprotein C-terminal domain DYQ05_05320 PF00941 FAD binding domain in molybdopterin dehydrogenase DYQ05_05330 PF00154 recA bacterial DNA recombination protein DYQ05_05335 PF01313 Bacterial export proteins, family 3 DYQ05_05340 PF01311 Bacterial export proteins, family 1 DYQ05_05345 PF01312 FlhB HrpN YscU SpaS Family DYQ05_05365 PF00403 Heavy-metal-associated domain DYQ05_05375 PF00158 Sigma-54 interaction domain DYQ05_05375 PF02954 Bacterial regulatory protein, Fis family DYQ05_05395 PF00834 Ribulose-phosphate 3 epimerase family DYQ05_05430 PF00005 ABC transporter DYQ05_05435 PF04225 Opacity-associated protein A LysM-like domain DYQ05_05435 PF01551 Peptidase family M23 DYQ05_05440 PF01966 HD domain DYQ05_05440 PF00013 KH domain DYQ05_05440 PF12072 Domain of unknown function (DUF3552) DYQ05_05465 PF00521 DNA gyrase/topoisomerase IV, subunit A DYQ05_05470 PF01497 Periplasmic binding protein DYQ05_05475 PF01032 FecCD transport family DYQ05_05480 PF00005 ABC transporter DYQ05_05500 PF00005 ABC transporter DYQ05_05500 PF00664 ABC transporter transmembrane region DYQ05_05505 PF00664 ABC transporter transmembrane region DYQ05_05505 PF03412 Peptidase C39 family DYQ05_05505 PF00005 ABC transporter DYQ05_05535 PF00005 ABC transporter DYQ05_05545 PF00005 ABC transporter DYQ05_05550 PF02571 Precorrin-6x reductase CbiJ/CobK DYQ05_05555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_05555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYQ05_05560 PF12729 Four helix bundle sensory module for signal transduction DYQ05_05560 PF00672 HAMP domain DYQ05_05560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_05565 PF07685 CobB/CobQ-like glutamine amidotransferase domain DYQ05_05565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DYQ05_05570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_05575 PF06180 Cobalt chelatase (CbiK) DYQ05_05595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_05595 PF02743 Cache domain DYQ05_05595 PF00672 HAMP domain DYQ05_05600 PF13375 RnfC Barrel sandwich hybrid domain DYQ05_05600 PF13237 4Fe-4S dicluster domain DYQ05_05600 PF10531 SLBB domain DYQ05_05600 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYQ05_05605 PF03116 NQR2, RnfD, RnfE family DYQ05_05610 PF04205 FMN-binding domain DYQ05_05615 PF02508 Rnf-Nqr subunit, membrane protein DYQ05_05625 PF05034 Methylaspartate ammonia-lyase N-terminus DYQ05_05625 PF07476 Methylaspartate ammonia-lyase C-terminus DYQ05_05640 PF02021 Uncharacterised protein family UPF0102 DYQ05_05645 PF00072 Response regulator receiver domain DYQ05_05650 PF01312 FlhB HrpN YscU SpaS Family DYQ05_05660 PF04452 RNA methyltransferase DYQ05_05670 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DYQ05_05670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DYQ05_05680 PF02527 rRNA small subunit methyltransferase G DYQ05_05685 PF00171 Aldehyde dehydrogenase family DYQ05_05690 PF03553 Na+/H+ antiporter family DYQ05_05695 PF06368 Methylaspartate mutase E chain (MutE) DYQ05_05700 PF00266 Aminotransferase class-V DYQ05_05715 PF03880 DbpA RNA binding domain DYQ05_05725 PF01554 MatE DYQ05_05730 PF00149 Calcineurin-like phosphoesterase DYQ05_05735 PF13476 AAA domain DYQ05_05755 PF14353 CpXC protein DYQ05_05760 PF01479 S4 domain DYQ05_05760 PF00849 RNA pseudouridylate synthase DYQ05_05780 PF00561 alpha/beta hydrolase fold DYQ05_05805 PF01425 Amidase DYQ05_05825 PF00027 Cyclic nucleotide-binding domain DYQ05_05825 PF13545 Crp-like helix-turn-helix domain DYQ05_05840 PF00753 Metallo-beta-lactamase superfamily DYQ05_05840 PF01613 Flavin reductase like domain DYQ05_05855 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_05860 PF00085 Thioredoxin DYQ05_05885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ05_05920 PF01494 FAD binding domain DYQ05_05925 PF01209 ubiE/COQ5 methyltransferase family DYQ05_05935 PF00348 Polyprenyl synthetase DYQ05_05940 PF11870 Domain of unknown function (DUF3390) DYQ05_05940 PF13183 4Fe-4S dicluster domain DYQ05_05940 PF02589 LUD domain DYQ05_05950 PF00005 ABC transporter DYQ05_05955 PF02374 Anion-transporting ATPase DYQ05_05955 PF17886 HSP20-like domain found in ArsA DYQ05_05960 PF02374 Anion-transporting ATPase DYQ05_05960 PF17886 HSP20-like domain found in ArsA DYQ05_05965 PF02652 L-lactate permease DYQ05_05970 PF01012 Electron transfer flavoprotein domain DYQ05_05975 PF01012 Electron transfer flavoprotein domain DYQ05_05975 PF00766 Electron transfer flavoprotein FAD-binding domain DYQ05_06100 PF01555 DNA methylase DYQ05_06120 PF01934 Protein of unknown function DUF86 DYQ05_06135 PF13195 Protein of unknown function (DUF4011) DYQ05_06135 PF13086 AAA domain DYQ05_06135 PF13087 AAA domain DYQ05_06190 PF00300 Histidine phosphatase superfamily (branch 1) DYQ05_06200 PF04055 Radical SAM superfamily DYQ05_06200 PF06463 Molybdenum Cofactor Synthesis C DYQ05_06220 PF12728 Helix-turn-helix domain DYQ05_06220 PF02661 Fic/DOC family DYQ05_06300 PF01048 Phosphorylase superfamily DYQ05_06460 PF05076 Suppressor of fused protein (SUFU) DYQ05_06470 PF00561 alpha/beta hydrolase fold DYQ05_06495 PF00005 ABC transporter DYQ05_06495 PF00664 ABC transporter transmembrane region DYQ05_06500 PF04055 Radical SAM superfamily DYQ05_06500 PF13186 Iron-sulfur cluster-binding domain DYQ05_06530 PF00248 Aldo/keto reductase family DYQ05_06555 PF00672 HAMP domain DYQ05_06555 PF02743 Cache domain DYQ05_06555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_06580 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_06580 PF09820 Predicted AAA-ATPase DYQ05_06585 PF02311 AraC-like ligand binding domain DYQ05_06585 PF12833 Helix-turn-helix domain DYQ05_06590 PF00664 ABC transporter transmembrane region DYQ05_06590 PF00005 ABC transporter DYQ05_06595 PF00664 ABC transporter transmembrane region DYQ05_06595 PF00005 ABC transporter DYQ05_06635 PF03601 Conserved hypothetical protein 698 DYQ05_06645 PF00005 ABC transporter DYQ05_06655 PF02743 Cache domain DYQ05_06655 PF00672 HAMP domain DYQ05_06655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_06660 PF00162 Phosphoglycerate kinase DYQ05_06675 PF02653 Branched-chain amino acid transport system / permease component DYQ05_06680 PF02653 Branched-chain amino acid transport system / permease component DYQ05_06685 PF00005 ABC transporter DYQ05_06690 PF02608 ABC transporter substrate-binding protein PnrA-like DYQ05_06695 PF03537 Glycoside-hydrolase family GH114 DYQ05_06720 PF04620 Flagellar filament outer layer protein Flaa DYQ05_06730 PF01649 Ribosomal protein S20 DYQ05_06735 PF00216 Bacterial DNA-binding protein DYQ05_06740 PF00795 Carbon-nitrogen hydrolase DYQ05_06750 PF18146 Damage-inducible protein CinA KH domain DYQ05_06750 PF02464 Competence-damaged protein DYQ05_06750 PF00994 Probable molybdopterin binding domain DYQ05_06755 PF00892 EamA-like transporter family DYQ05_06760 PF03313 Serine dehydratase alpha chain DYQ05_06765 PF02743 Cache domain DYQ05_06765 PF00672 HAMP domain DYQ05_06765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_06770 PF13735 tRNA nucleotidyltransferase domain 2 putative DYQ05_06770 PF01743 Poly A polymerase head domain DYQ05_06770 PF12627 Probable RNA and SrmB- binding site of polymerase A DYQ05_06790 PF00664 ABC transporter transmembrane region DYQ05_06790 PF00005 ABC transporter DYQ05_06795 PF00664 ABC transporter transmembrane region DYQ05_06795 PF00005 ABC transporter DYQ05_06825 PF01702 Queuine tRNA-ribosyltransferase DYQ05_06830 PF12850 Calcineurin-like phosphoesterase superfamily domain DYQ05_06845 PF01281 Ribosomal protein L9, N-terminal domain DYQ05_06845 PF03948 Ribosomal protein L9, C-terminal domain DYQ05_06850 PF01084 Ribosomal protein S18 DYQ05_06855 PF00436 Single-strand binding protein family DYQ05_06860 PF01250 Ribosomal protein S6 DYQ05_06885 PF05593 RHS Repeat DYQ05_06885 PF05488 PAAR motif DYQ05_06895 PF05593 RHS Repeat DYQ05_06895 PF05488 PAAR motif DYQ05_06900 PF00860 Permease family DYQ05_06915 PF01888 CbiD DYQ05_06920 PF02901 Pyruvate formate lyase-like DYQ05_06920 PF01228 Glycine radical DYQ05_06925 PF04055 Radical SAM superfamily DYQ05_06930 PF00011 Hsp20/alpha crystallin family DYQ05_06940 PF16314 Domain of unknown function (DUF4954) DYQ05_06965 PF00005 ABC transporter DYQ05_06965 PF00664 ABC transporter transmembrane region DYQ05_06970 PF00664 ABC transporter transmembrane region DYQ05_06970 PF00005 ABC transporter DYQ05_06975 PF00005 ABC transporter DYQ05_06980 PF01032 FecCD transport family DYQ05_06985 PF01497 Periplasmic binding protein DYQ05_06990 PF17200 Single Cache domain 2 DYQ05_06990 PF00672 HAMP domain DYQ05_06990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_06995 PF01339 CheB methylesterase DYQ05_06995 PF00072 Response regulator receiver domain DYQ05_07000 PF03705 CheR methyltransferase, all-alpha domain DYQ05_07000 PF01739 CheR methyltransferase, SAM binding domain DYQ05_07015 PF12399 Branched-chain amino acid ATP-binding cassette transporter DYQ05_07015 PF00005 ABC transporter DYQ05_07020 PF03358 NADPH-dependent FMN reductase DYQ05_07020 PF04205 FMN-binding domain DYQ05_07020 PF00890 FAD binding domain DYQ05_07025 PF01966 HD domain DYQ05_07035 PF07687 Peptidase dimerisation domain DYQ05_07035 PF01546 Peptidase family M20/M25/M40 DYQ05_07040 PF13393 Histidyl-tRNA synthetase DYQ05_07050 PF02654 Cobalamin-5-phosphate synthase DYQ05_07105 PF01740 STAS domain DYQ05_07135 PF01212 Beta-eliminating lyase DYQ05_07140 PF00005 ABC transporter DYQ05_07150 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_07155 PF01991 ATP synthase (E/31 kDa) subunit DYQ05_07175 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DYQ05_07175 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DYQ05_07185 PF01212 Beta-eliminating lyase DYQ05_07195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_07195 PF00005 ABC transporter DYQ05_07200 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_07200 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_07205 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_07210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_07215 PF02743 Cache domain DYQ05_07215 PF00672 HAMP domain DYQ05_07215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_07235 PF13847 Methyltransferase domain DYQ05_07240 PF01496 V-type ATPase 116kDa subunit family DYQ05_07255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYQ05_07255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DYQ05_07260 PF03840 Preprotein translocase SecG subunit DYQ05_07270 PF03462 PCRF domain DYQ05_07270 PF00472 RF-1 domain DYQ05_07275 PF17827 PrmC N-terminal domain DYQ05_07275 PF05175 Methyltransferase small domain DYQ05_07285 PF00288 GHMP kinases N terminal domain DYQ05_07285 PF08544 GHMP kinases C terminal DYQ05_07290 PF00288 GHMP kinases N terminal domain DYQ05_07290 PF08544 GHMP kinases C terminal DYQ05_07295 PF00288 GHMP kinases N terminal domain DYQ05_07295 PF08544 GHMP kinases C terminal DYQ05_07300 PF04026 SpoVG DYQ05_07310 PF01386 Ribosomal L25p family DYQ05_07310 PF14693 Ribosomal protein TL5, C-terminal domain DYQ05_07315 PF03144 Elongation factor Tu domain 2 DYQ05_07315 PF00009 Elongation factor Tu GTP binding domain DYQ05_07315 PF03764 Elongation factor G, domain IV DYQ05_07315 PF14492 Elongation Factor G, domain II DYQ05_07315 PF00679 Elongation factor G C-terminus DYQ05_07325 PF02915 Rubrerythrin DYQ05_07330 PF02690 Na+/Pi-cotransporter DYQ05_07345 PF13520 Amino acid permease DYQ05_07350 PF07722 Peptidase C26 DYQ05_07355 PF07497 Rho termination factor, RNA-binding domain DYQ05_07355 PF07498 Rho termination factor, N-terminal domain DYQ05_07355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_07370 PF00753 Metallo-beta-lactamase superfamily DYQ05_07405 PF16193 AAA C-terminal domain DYQ05_07405 PF12002 MgsA AAA+ ATPase C terminal DYQ05_07405 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_07410 PF00005 ABC transporter DYQ05_07415 PF01458 Uncharacterized protein family (UPF0051) DYQ05_07425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ05_07425 PF03466 LysR substrate binding domain DYQ05_07430 PF00005 ABC transporter DYQ05_07440 PF09334 tRNA synthetases class I (M) DYQ05_07440 PF13603 Leucyl-tRNA synthetase, Domain 2 DYQ05_07440 PF00133 tRNA synthetases class I (I, L, M and V) DYQ05_07440 PF08264 Anticodon-binding domain of tRNA DYQ05_07460 PF09028 Mac 1 DYQ05_07470 PF06470 SMC proteins Flexible Hinge Domain DYQ05_07470 PF02463 RecF/RecN/SMC N terminal domain DYQ05_07480 PF13525 Outer membrane lipoprotein DYQ05_07645 PF18807 Tripartite Tc toxins repeat DYQ05_07645 PF05785 Rho-activating domain of cytotoxic necrotizing factor DYQ05_07860 PF04055 Radical SAM superfamily DYQ05_07860 PF06969 HemN C-terminal domain DYQ05_07875 PF01032 FecCD transport family DYQ05_07890 PF02844 Phosphoribosylglycinamide synthetase, N domain DYQ05_07890 PF02843 Phosphoribosylglycinamide synthetase, C domain DYQ05_07890 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DYQ05_07895 PF07478 D-ala D-ala ligase C-terminus DYQ05_07895 PF01820 D-ala D-ala ligase N-terminus DYQ05_07905 PF03853 YjeF-related protein N-terminus DYQ05_07905 PF01256 Carbohydrate kinase DYQ05_07915 PF08340 Domain of unknown function (DUF1732) DYQ05_07915 PF03755 YicC-like family, N-terminal region DYQ05_07920 PF08245 Mur ligase middle domain DYQ05_07920 PF02875 Mur ligase family, glutamate ligase domain DYQ05_07920 PF01225 Mur ligase family, catalytic domain DYQ05_07925 PF02875 Mur ligase family, glutamate ligase domain DYQ05_07925 PF08245 Mur ligase middle domain DYQ05_07930 PF00849 RNA pseudouridylate synthase DYQ05_07935 PF00849 RNA pseudouridylate synthase DYQ05_07945 PF00398 Ribosomal RNA adenine dimethylase DYQ05_07950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYQ05_07960 PF01297 Zinc-uptake complex component A periplasmic DYQ05_07965 PF00186 Dihydrofolate reductase DYQ05_07975 PF02152 Dihydroneopterin aldolase DYQ05_07975 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DYQ05_07980 PF01551 Peptidase family M23 DYQ05_07980 PF10145 Phage-related minor tail protein DYQ05_07980 PF01464 Transglycosylase SLT domain DYQ05_07990 PF08281 Sigma-70, region 4 DYQ05_07990 PF04542 Sigma-70 region 2 DYQ05_08005 PF10509 Galactokinase galactose-binding signature DYQ05_08005 PF08544 GHMP kinases C terminal DYQ05_08010 PF00795 Carbon-nitrogen hydrolase DYQ05_08015 PF02554 Carbon starvation protein CstA DYQ05_08020 PF03819 MazG nucleotide pyrophosphohydrolase domain DYQ05_08035 PF03572 Peptidase family S41 DYQ05_08035 PF13180 PDZ domain DYQ05_08040 PF01554 MatE DYQ05_08050 PF00696 Amino acid kinase family DYQ05_08070 PF13307 Helicase C-terminal domain DYQ05_08070 PF06733 DEAD_2 DYQ05_08125 PF05785 Rho-activating domain of cytotoxic necrotizing factor DYQ05_08125 PF18807 Tripartite Tc toxins repeat DYQ05_08310 PF10996 Beta-Casp domain DYQ05_08310 PF00753 Metallo-beta-lactamase superfamily DYQ05_08310 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DYQ05_08330 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DYQ05_08330 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DYQ05_08330 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DYQ05_08335 PF12832 MFS_1 like family DYQ05_08350 PF00150 Cellulase (glycosyl hydrolase family 5) DYQ05_08365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYQ05_08365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYQ05_08370 PF01728 FtsJ-like methyltransferase DYQ05_08390 PF01121 Dephospho-CoA kinase DYQ05_08395 PF01367 5'-3' exonuclease, C-terminal SAM fold DYQ05_08395 PF01612 3'-5' exonuclease DYQ05_08395 PF00476 DNA polymerase family A DYQ05_08395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DYQ05_08410 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DYQ05_08410 PF00591 Glycosyl transferase family, a/b domain DYQ05_08410 PF02885 Glycosyl transferase family, helical bundle domain DYQ05_08440 PF09335 SNARE associated Golgi protein DYQ05_08450 PF00581 Rhodanese-like domain DYQ05_08460 PF00924 Mechanosensitive ion channel DYQ05_08490 PF00581 Rhodanese-like domain DYQ05_08495 PF02627 Carboxymuconolactone decarboxylase family DYQ05_08510 PF01380 SIS domain DYQ05_08545 PF10397 Adenylosuccinate lyase C-terminus DYQ05_08545 PF00206 Lyase DYQ05_08550 PF08275 DNA primase catalytic core, N-terminal domain DYQ05_08550 PF01807 CHC2 zinc finger DYQ05_08555 PF04545 Sigma-70, region 4 DYQ05_08555 PF04542 Sigma-70 region 2 DYQ05_08555 PF00140 Sigma-70 factor, region 1.2 DYQ05_08555 PF04539 Sigma-70 region 3 DYQ05_08555 PF03979 Sigma-70 factor, region 1.1 DYQ05_08590 PF03717 Penicillin-binding Protein dimerisation domain DYQ05_08590 PF00905 Penicillin binding protein transpeptidase domain DYQ05_08595 PF01098 Cell cycle protein DYQ05_08615 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_08615 PF16886 ATPsynthase alpha/beta subunit N-term extension DYQ05_08615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_08620 PF02743 Cache domain DYQ05_08620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_08620 PF00672 HAMP domain DYQ05_08635 PF01813 ATP synthase subunit D DYQ05_08640 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_08640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_08645 PF16886 ATPsynthase alpha/beta subunit N-term extension DYQ05_08645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_08645 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_08650 PF00156 Phosphoribosyl transferase domain DYQ05_08675 PF01177 Asp/Glu/Hydantoin racemase DYQ05_08690 PF00795 Carbon-nitrogen hydrolase DYQ05_08710 PF01709 Transcriptional regulator DYQ05_08715 PF02142 MGS-like domain DYQ05_08715 PF01808 AICARFT/IMPCHase bienzyme DYQ05_08720 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_08720 PF09820 Predicted AAA-ATPase DYQ05_08725 PF02127 Aminopeptidase I zinc metalloprotease (M18) DYQ05_08745 PF07977 FabA-like domain DYQ05_08755 PF01235 Sodium:alanine symporter family DYQ05_08775 PF02417 Chromate transporter DYQ05_08790 PF02562 PhoH-like protein DYQ05_08795 PF07697 7TM-HD extracellular DYQ05_08795 PF01966 HD domain DYQ05_08795 PF07698 7TM receptor with intracellular HD hydrolase DYQ05_08800 PF02130 Uncharacterized protein family UPF0054 DYQ05_08805 PF03471 Transporter associated domain DYQ05_08805 PF00571 CBS domain DYQ05_08810 PF00691 OmpA family DYQ05_08815 PF01132 Elongation factor P (EF-P) OB domain DYQ05_08815 PF08207 Elongation factor P (EF-P) KOW-like domain DYQ05_08815 PF09285 Elongation factor P, C-terminal DYQ05_08825 PF02517 CPBP intramembrane metalloprotease DYQ05_08850 PF08669 Glycine cleavage T-protein C-terminal barrel domain DYQ05_08850 PF01571 Aminomethyltransferase folate-binding domain DYQ05_08865 PF01597 Glycine cleavage H-protein DYQ05_08875 PF02347 Glycine cleavage system P-protein DYQ05_08880 PF02609 Exonuclease VII small subunit DYQ05_08885 PF01119 DNA mismatch repair protein, C-terminal domain DYQ05_08885 PF08676 MutL C terminal dimerisation domain DYQ05_08890 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DYQ05_08925 PF10502 Signal peptidase, peptidase S26 DYQ05_08930 PF04055 Radical SAM superfamily DYQ05_08940 PF00301 Rubredoxin DYQ05_08950 PF02277 Phosphoribosyltransferase DYQ05_08960 PF13277 YmdB-like protein DYQ05_08970 PF00348 Polyprenyl synthetase DYQ05_08985 PF00005 ABC transporter DYQ05_09020 PF01235 Sodium:alanine symporter family DYQ05_09030 PF01546 Peptidase family M20/M25/M40 DYQ05_09030 PF07687 Peptidase dimerisation domain DYQ05_09035 PF10672 S-adenosylmethionine-dependent methyltransferase DYQ05_09035 PF17785 PUA-like domain DYQ05_09040 PF01165 Ribosomal protein S21 DYQ05_09045 PF01653 NAD-dependent DNA ligase adenylation domain DYQ05_09045 PF03120 NAD-dependent DNA ligase OB-fold domain DYQ05_09045 PF00533 BRCA1 C Terminus (BRCT) domain DYQ05_09065 PF00155 Aminotransferase class I and II DYQ05_09085 PF05343 M42 glutamyl aminopeptidase DYQ05_09090 PF03949 Malic enzyme, NAD binding domain DYQ05_09090 PF00390 Malic enzyme, N-terminal domain DYQ05_09105 PF04298 Putative neutral zinc metallopeptidase DYQ05_09110 PF01189 16S rRNA methyltransferase RsmB/F DYQ05_09110 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DYQ05_09110 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DYQ05_09115 PF00849 RNA pseudouridylate synthase DYQ05_09120 PF10672 S-adenosylmethionine-dependent methyltransferase DYQ05_09125 PF06971 Putative DNA-binding protein N-terminus DYQ05_09125 PF02629 CoA binding domain DYQ05_09130 PF00871 Acetokinase family DYQ05_09145 PF04055 Radical SAM superfamily DYQ05_09150 PF04552 Sigma-54, DNA binding domain DYQ05_09150 PF04963 Sigma-54 factor, core binding domain DYQ05_09150 PF00309 Sigma-54 factor, Activator interacting domain (AID) DYQ05_09175 PF17820 PDZ domain DYQ05_09175 PF13180 PDZ domain DYQ05_09180 PF02542 YgbB family DYQ05_09185 PF02542 YgbB family DYQ05_09185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DYQ05_09190 PF02559 CarD-like/TRCF domain DYQ05_09205 PF00005 ABC transporter DYQ05_09205 PF12704 MacB-like periplasmic core domain DYQ05_09205 PF02687 FtsX-like permease family DYQ05_09215 PF12704 MacB-like periplasmic core domain DYQ05_09215 PF00005 ABC transporter DYQ05_09215 PF02687 FtsX-like permease family DYQ05_09225 PF01300 Telomere recombination DYQ05_09260 PF03707 Bacterial signalling protein N terminal repeat DYQ05_09260 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_09260 PF00563 EAL domain DYQ05_09275 PF02954 Bacterial regulatory protein, Fis family DYQ05_09275 PF00072 Response regulator receiver domain DYQ05_09275 PF00158 Sigma-54 interaction domain DYQ05_09280 PF00575 S1 RNA binding domain DYQ05_09305 PF17755 UvrA DNA-binding domain DYQ05_09305 PF00005 ABC transporter DYQ05_09305 PF17760 UvrA interaction domain DYQ05_09345 PF01476 LysM domain DYQ05_09350 PF03553 Na+/H+ antiporter family DYQ05_09355 PF01053 Cys/Met metabolism PLP-dependent enzyme DYQ05_09375 PF01351 Ribonuclease HII DYQ05_09390 PF12848 ABC transporter DYQ05_09390 PF00005 ABC transporter DYQ05_09395 PF00232 Glycosyl hydrolase family 1 DYQ05_09405 PF09820 Predicted AAA-ATPase DYQ05_09405 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_09415 PF00773 RNB domain DYQ05_09420 PF00082 Subtilase family DYQ05_09420 PF05922 Peptidase inhibitor I9 DYQ05_09440 PF01263 Aldose 1-epimerase DYQ05_09450 PF03193 RsgA GTPase DYQ05_09450 PF16745 RsgA N-terminal domain DYQ05_09465 PF01921 tRNA synthetases class I (K) DYQ05_09470 PF00155 Aminotransferase class I and II DYQ05_09480 PF17864 RuvB AAA lid domain DYQ05_09480 PF05491 RuvB C-terminal winged helix domain DYQ05_09480 PF05496 Holliday junction DNA helicase RuvB P-loop domain DYQ05_09490 PF00483 Nucleotidyl transferase DYQ05_09495 PF17871 AAA lid domain DYQ05_09495 PF02861 Clp amino terminal domain, pathogenicity island component DYQ05_09495 PF07724 AAA domain (Cdc48 subfamily) DYQ05_09495 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_09495 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ05_09500 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain DYQ05_09505 PF02151 UvrB/uvrC motif DYQ05_09515 PF00005 ABC transporter DYQ05_09520 PF12704 MacB-like periplasmic core domain DYQ05_09520 PF02687 FtsX-like permease family DYQ05_09530 PF02881 SRP54-type protein, helical bundle domain DYQ05_09530 PF00448 SRP54-type protein, GTPase domain DYQ05_09560 PF02743 Cache domain DYQ05_09560 PF00672 HAMP domain DYQ05_09560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_09565 PF08534 Redoxin DYQ05_09580 PF00679 Elongation factor G C-terminus DYQ05_09580 PF03144 Elongation factor Tu domain 2 DYQ05_09580 PF03764 Elongation factor G, domain IV DYQ05_09580 PF14492 Elongation Factor G, domain II DYQ05_09580 PF00009 Elongation factor Tu GTP binding domain DYQ05_09585 PF13537 Glutamine amidotransferase domain DYQ05_09585 PF00156 Phosphoribosyl transferase domain DYQ05_09595 PF13726 Na+-H+ antiporter family DYQ05_09595 PF03553 Na+/H+ antiporter family DYQ05_09610 PF01264 Chorismate synthase DYQ05_09615 PF00440 Bacterial regulatory proteins, tetR family DYQ05_09615 PF17932 Tetracyclin repressor-like, C-terminal domain DYQ05_09625 PF00005 ABC transporter DYQ05_09640 PF12848 ABC transporter DYQ05_09640 PF00005 ABC transporter DYQ05_09640 PF16326 ABC transporter C-terminal domain DYQ05_09645 PF08239 Bacterial SH3 domain DYQ05_09670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_09670 PF00005 ABC transporter DYQ05_09675 PF00005 ABC transporter DYQ05_09675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_09680 PF00005 ABC transporter DYQ05_09685 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_09685 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_09690 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_09700 PF01523 Putative modulator of DNA gyrase DYQ05_09710 PF00375 Sodium:dicarboxylate symporter family DYQ05_09720 PF01973 Protein of unknown function DUF115 DYQ05_09725 PF01556 DnaJ C terminal domain DYQ05_09725 PF00226 DnaJ domain DYQ05_09725 PF00684 DnaJ central domain DYQ05_09730 PF00012 Hsp70 protein DYQ05_09735 PF01025 GrpE DYQ05_09740 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DYQ05_09745 PF02769 AIR synthase related protein, C-terminal domain DYQ05_09745 PF00586 AIR synthase related protein, N-terminal domain DYQ05_09750 PF01488 Shikimate / quinate 5-dehydrogenase DYQ05_09750 PF08501 Shikimate dehydrogenase substrate binding domain DYQ05_09750 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DYQ05_09765 PF02779 Transketolase, pyrimidine binding domain DYQ05_09765 PF00456 Transketolase, thiamine diphosphate binding domain DYQ05_09770 PF03099 Biotin/lipoate A/B protein ligase family DYQ05_09770 PF08279 HTH domain DYQ05_09770 PF02237 Biotin protein ligase C terminal domain DYQ05_09775 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DYQ05_09780 PF01039 Carboxyl transferase domain DYQ05_09785 PF02785 Biotin carboxylase C-terminal domain DYQ05_09785 PF00289 Biotin carboxylase, N-terminal domain DYQ05_09785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYQ05_09790 PF00364 Biotin-requiring enzyme DYQ05_09795 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DYQ05_09795 PF12241 Trans-2-enoyl-CoA reductase catalytic region DYQ05_09795 PF07055 Enoyl reductase FAD binding domain DYQ05_09800 PF00109 Beta-ketoacyl synthase, N-terminal domain DYQ05_09800 PF02801 Beta-ketoacyl synthase, C-terminal domain DYQ05_09810 PF00698 Acyl transferase domain DYQ05_09815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYQ05_09815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DYQ05_09825 PF01336 OB-fold nucleic acid binding domain DYQ05_09825 PF02938 GAD domain DYQ05_09825 PF00152 tRNA synthetases class II (D, K and N) DYQ05_09840 PF03062 MBOAT, membrane-bound O-acyltransferase family DYQ05_09850 PF01145 SPFH domain / Band 7 family DYQ05_09855 PF01145 SPFH domain / Band 7 family DYQ05_09870 PF05683 Fumarase C-terminus DYQ05_09870 PF05681 Fumarate hydratase (Fumerase) DYQ05_09875 PF05681 Fumarate hydratase (Fumerase) DYQ05_09880 PF00700 Bacterial flagellin C-terminal helical region DYQ05_09880 PF00669 Bacterial flagellin N-terminal helical region DYQ05_09885 PF01584 CheW-like domain DYQ05_09895 PF01513 ATP-NAD kinase DYQ05_09900 PF00664 ABC transporter transmembrane region DYQ05_09900 PF00005 ABC transporter DYQ05_09910 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYQ05_09910 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYQ05_09915 PF00221 Aromatic amino acid lyase DYQ05_09925 PF00005 ABC transporter DYQ05_09940 PF03477 ATP cone domain DYQ05_10090 PF04073 Aminoacyl-tRNA editing domain DYQ05_10090 PF03129 Anticodon binding domain DYQ05_10090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ05_10095 PF00005 ABC transporter DYQ05_10095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_10100 PF00005 ABC transporter DYQ05_10100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_10105 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_10105 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_10110 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_10115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_10125 PF00892 EamA-like transporter family DYQ05_10130 PF05670 NFACT protein RNA binding domain DYQ05_10145 PF08323 Starch synthase catalytic domain DYQ05_10145 PF00534 Glycosyl transferases group 1 DYQ05_10155 PF04260 Protein of unknown function (DUF436) DYQ05_10170 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ05_10185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ05_10185 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ05_10185 PF18269 T3SS EscN ATPase C-terminal domain DYQ05_10190 PF02108 Flagellar assembly protein FliH DYQ05_10195 PF14842 FliG N-terminal domain DYQ05_10195 PF01706 FliG C-terminal domain DYQ05_10195 PF14841 FliG middle domain DYQ05_10200 PF08345 Flagellar M-ring protein C-terminal DYQ05_10200 PF01514 Secretory protein of YscJ/FliF family DYQ05_10205 PF02049 Flagellar hook-basal body complex protein FliE DYQ05_10210 PF00460 Flagella basal body rod protein DYQ05_10210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_10215 PF00460 Flagella basal body rod protein DYQ05_10220 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_10220 PF07724 AAA domain (Cdc48 subfamily) DYQ05_10225 PF00227 Proteasome subunit DYQ05_10230 PF00589 Phage integrase family DYQ05_10230 PF02899 Phage integrase, N-terminal SAM-like domain DYQ05_10235 PF01751 Toprim domain DYQ05_10235 PF01131 DNA topoisomerase DYQ05_10235 PF01396 Topoisomerase DNA binding C4 zinc finger DYQ05_10240 PF02481 DNA recombination-mediator protein A DYQ05_10240 PF17782 DprA winged helix domain DYQ05_10250 PF00589 Phage integrase family DYQ05_10250 PF02899 Phage integrase, N-terminal SAM-like domain DYQ05_10255 PF12327 FtsZ family, C-terminal domain DYQ05_10255 PF00091 Tubulin/FtsZ family, GTPase domain DYQ05_10260 PF02491 SHS2 domain inserted in FTSA DYQ05_10270 PF01098 Cell cycle protein DYQ05_10275 PF08245 Mur ligase middle domain DYQ05_10275 PF01225 Mur ligase family, catalytic domain DYQ05_10275 PF02875 Mur ligase family, glutamate ligase domain DYQ05_10290 PF02381 MraZ protein, putative antitoxin-like DYQ05_10300 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DYQ05_10300 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DYQ05_10305 PF10282 Lactonase, 7-bladed beta-propeller DYQ05_10315 PF00270 DEAD/DEAH box helicase DYQ05_10315 PF00271 Helicase conserved C-terminal domain DYQ05_10325 PF09338 Glycine/sarcosine/betaine reductase component B subunits DYQ05_10335 PF01205 Uncharacterized protein family UPF0029 DYQ05_10335 PF09186 Domain of unknown function (DUF1949) DYQ05_10355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_10360 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_10365 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_10365 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_10370 PF00005 ABC transporter DYQ05_10370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_10380 PF08241 Methyltransferase domain DYQ05_10385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYQ05_10395 PF14492 Elongation Factor G, domain II DYQ05_10395 PF00009 Elongation factor Tu GTP binding domain DYQ05_10395 PF03144 Elongation factor Tu domain 2 DYQ05_10395 PF06421 GTP-binding protein LepA C-terminus DYQ05_10395 PF00679 Elongation factor G C-terminus DYQ05_10400 PF00156 Phosphoribosyl transferase domain DYQ05_10405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_10405 PF00672 HAMP domain DYQ05_10405 PF02743 Cache domain DYQ05_10415 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DYQ05_10415 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DYQ05_10415 PF13288 DXP reductoisomerase C-terminal domain DYQ05_10425 PF01255 Putative undecaprenyl diphosphate synthase DYQ05_10430 PF01765 Ribosome recycling factor DYQ05_10435 PF00889 Elongation factor TS DYQ05_10440 PF00318 Ribosomal protein S2 DYQ05_10475 PF05593 RHS Repeat DYQ05_10475 PF05488 PAAR motif DYQ05_10490 PF03515 Colicin-like bacteriocin tRNase domain DYQ05_10490 PF11429 Colicin D DYQ05_10490 PF06958 S-type Pyocin DYQ05_10525 PF05593 RHS Repeat DYQ05_10525 PF03527 RHS protein DYQ05_10525 PF14220 Domain of unknown function (DUF4329) DYQ05_10535 PF05488 PAAR motif DYQ05_10535 PF05593 RHS Repeat DYQ05_10550 PF05488 PAAR motif DYQ05_10550 PF05593 RHS Repeat DYQ05_10570 PF00672 HAMP domain DYQ05_10570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_10570 PF02743 Cache domain DYQ05_10585 PF01523 Putative modulator of DNA gyrase DYQ05_10590 PF06857 Malonate decarboxylase delta subunit (MdcD) DYQ05_10595 PF03328 HpcH/HpaI aldolase/citrate lyase family DYQ05_10600 PF04223 Citrate lyase, alpha subunit (CitF) DYQ05_10605 PF00009 Elongation factor Tu GTP binding domain DYQ05_10605 PF03144 Elongation factor Tu domain 2 DYQ05_10605 PF09107 Elongation factor SelB, winged helix DYQ05_10605 PF09106 Elongation factor SelB, winged helix DYQ05_10605 PF09105 Elongation factor SelB, winged helix DYQ05_10615 PF01176 Translation initiation factor 1A / IF-1 DYQ05_10620 PF00226 DnaJ domain DYQ05_10620 PF01556 DnaJ C terminal domain DYQ05_10620 PF00684 DnaJ central domain DYQ05_10625 PF00696 Amino acid kinase family DYQ05_10630 PF01648 4'-phosphopantetheinyl transferase superfamily DYQ05_10640 PF02457 DisA bacterial checkpoint controller nucleotide-binding DYQ05_10645 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DYQ05_10645 PF02779 Transketolase, pyrimidine binding domain DYQ05_10645 PF02780 Transketolase, C-terminal domain DYQ05_10650 PF13180 PDZ domain DYQ05_10650 PF17820 PDZ domain DYQ05_10655 PF02545 Maf-like protein DYQ05_10670 PF00669 Bacterial flagellin N-terminal helical region DYQ05_10670 PF00700 Bacterial flagellin C-terminal helical region DYQ05_10675 PF00700 Bacterial flagellin C-terminal helical region DYQ05_10675 PF00669 Bacterial flagellin N-terminal helical region DYQ05_10680 PF03646 FlaG protein DYQ05_10685 PF02465 Flagellar hook-associated protein 2 N-terminus DYQ05_10685 PF07195 Flagellar hook-associated protein 2 C-terminus DYQ05_10700 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DYQ05_10710 PF00072 Response regulator receiver domain DYQ05_10715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYQ05_10715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYQ05_10715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYQ05_10715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYQ05_10720 PF00929 Exonuclease DYQ05_10725 PF00072 Response regulator receiver domain DYQ05_10725 PF02954 Bacterial regulatory protein, Fis family DYQ05_10725 PF00158 Sigma-54 interaction domain DYQ05_10735 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DYQ05_10785 PF13186 Iron-sulfur cluster-binding domain DYQ05_10800 PF01641 SelR domain DYQ05_10800 PF01625 Peptide methionine sulfoxide reductase DYQ05_10810 PF02623 FliW protein DYQ05_10815 PF02599 Global regulator protein family DYQ05_10820 PF05857 TraX protein DYQ05_10825 PF00579 tRNA synthetases class I (W and Y) DYQ05_10835 PF14537 Cytochrome c3 DYQ05_10835 PF00890 FAD binding domain DYQ05_10865 PF01078 Magnesium chelatase, subunit ChlI DYQ05_10865 PF13335 Magnesium chelatase, subunit ChlI C-terminal DYQ05_10870 PF03806 AbgT putative transporter family DYQ05_10880 PF04551 GcpE protein DYQ05_10900 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_10900 PF04324 BFD-like [2Fe-2S] binding domain DYQ05_10905 PF01266 FAD dependent oxidoreductase DYQ05_10910 PF00460 Flagella basal body rod protein DYQ05_10910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_10915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYQ05_10915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYQ05_10930 PF01029 NusB family DYQ05_10935 PF13145 PPIC-type PPIASE domain DYQ05_10940 PF01411 tRNA synthetases class II (A) DYQ05_10940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYQ05_10970 PF01195 Peptidyl-tRNA hydrolase DYQ05_10980 PF00224 Pyruvate kinase, barrel domain DYQ05_10980 PF02887 Pyruvate kinase, alpha/beta domain DYQ05_10980 PF00391 PEP-utilising enzyme, mobile domain DYQ05_10985 PF00326 Prolyl oligopeptidase family DYQ05_11000 PF00551 Formyl transferase DYQ05_11035 PF02810 SEC-C motif DYQ05_11035 PF01043 SecA preprotein cross-linking domain DYQ05_11035 PF07516 SecA Wing and Scaffold domain DYQ05_11035 PF07517 SecA DEAD-like domain DYQ05_11040 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_11040 PF09820 Predicted AAA-ATPase DYQ05_11050 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_11075 PF08668 HDOD domain DYQ05_11085 PF13545 Crp-like helix-turn-helix domain DYQ05_11085 PF00027 Cyclic nucleotide-binding domain DYQ05_11090 PF01252 Signal peptidase (SPase) II DYQ05_11095 PF02424 ApbE family DYQ05_11100 PF05958 tRNA (Uracil-5-)-methyltransferase DYQ05_11140 PF03781 Sulfatase-modifying factor enzyme 1 DYQ05_11145 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_11145 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DYQ05_11150 PF00037 4Fe-4S binding domain DYQ05_11150 PF02256 Iron hydrogenase small subunit DYQ05_11150 PF02906 Iron only hydrogenase large subunit, C-terminal domain DYQ05_11150 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DYQ05_11155 PF01938 TRAM domain DYQ05_11155 PF00919 Uncharacterized protein family UPF0004 DYQ05_11155 PF04055 Radical SAM superfamily DYQ05_11160 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DYQ05_11160 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DYQ05_11165 PF01891 Cobalt uptake substrate-specific transmembrane region DYQ05_11175 PF01008 Initiation factor 2 subunit family DYQ05_11195 PF00118 TCP-1/cpn60 chaperonin family DYQ05_11205 PF07009 NusG domain II DYQ05_11210 PF00005 ABC transporter DYQ05_11210 PF02687 FtsX-like permease family DYQ05_11210 PF12704 MacB-like periplasmic core domain DYQ05_11215 PF16325 Peptidase family U32 C-terminal domain DYQ05_11215 PF01136 Peptidase family U32 DYQ05_11220 PF07859 alpha/beta hydrolase fold DYQ05_11225 PF00664 ABC transporter transmembrane region DYQ05_11225 PF00005 ABC transporter DYQ05_11240 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_11240 PF09820 Predicted AAA-ATPase DYQ05_11250 PF00005 ABC transporter DYQ05_11265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYQ05_11270 PF06745 KaiC DYQ05_11270 PF18073 Rubredoxin metal binding domain DYQ05_11320 PF00005 ABC transporter DYQ05_11325 PF02355 Protein export membrane protein DYQ05_11330 PF02355 Protein export membrane protein DYQ05_11335 PF02699 Preprotein translocase subunit DYQ05_11340 PF01783 Ribosomal L32p protein family DYQ05_11345 PF00550 Phosphopantetheine attachment site DYQ05_11350 PF00035 Double-stranded RNA binding motif DYQ05_11350 PF14622 Ribonuclease-III-like DYQ05_11355 PF00270 DEAD/DEAH box helicase DYQ05_11355 PF00271 Helicase conserved C-terminal domain DYQ05_11355 PF18074 Primosomal protein N C-terminal domain DYQ05_11355 PF17764 3′ DNA-binding domain (3′BD) DYQ05_11355 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DYQ05_11360 PF03167 Uracil DNA glycosylase superfamily DYQ05_11370 PF00579 tRNA synthetases class I (W and Y) DYQ05_11375 PF05191 Adenylate kinase, active site lid DYQ05_11395 PF04225 Opacity-associated protein A LysM-like domain DYQ05_11395 PF01551 Peptidase family M23 DYQ05_11415 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DYQ05_11415 PF12733 Cadherin-like beta sandwich domain DYQ05_11430 PF17757 UvrB interaction domain DYQ05_11430 PF12344 Ultra-violet resistance protein B DYQ05_11430 PF04851 Type III restriction enzyme, res subunit DYQ05_11430 PF00271 Helicase conserved C-terminal domain DYQ05_11430 PF02151 UvrB/uvrC motif DYQ05_11435 PF01197 Ribosomal protein L31 DYQ05_11450 PF00206 Lyase DYQ05_11450 PF10415 Fumarase C C-terminus DYQ05_11455 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_11455 PF09820 Predicted AAA-ATPase DYQ05_11460 PF02559 CarD-like/TRCF domain DYQ05_11460 PF17757 UvrB interaction domain DYQ05_11460 PF00271 Helicase conserved C-terminal domain DYQ05_11460 PF00270 DEAD/DEAH box helicase DYQ05_11460 PF03461 TRCF domain DYQ05_11475 PF00403 Heavy-metal-associated domain DYQ05_11480 PF01022 Bacterial regulatory protein, arsR family DYQ05_11485 PF07238 PilZ domain DYQ05_11495 PF00005 ABC transporter DYQ05_11500 PF00588 SpoU rRNA Methylase family DYQ05_11505 PF11849 Domain of unknown function (DUF3369) DYQ05_11510 PF03841 L-seryl-tRNA selenium transferase DYQ05_11510 PF12390 Selenocysteine synthase N terminal DYQ05_11515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYQ05_11515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYQ05_11525 PF12826 Helix-hairpin-helix motif DYQ05_11525 PF04002 RadC-like JAB domain DYQ05_11535 PF00578 AhpC/TSA family DYQ05_11540 PF04205 FMN-binding domain DYQ05_11540 PF12801 4Fe-4S binding domain DYQ05_11545 PF00664 ABC transporter transmembrane region DYQ05_11545 PF00005 ABC transporter DYQ05_11575 PF04101 Glycosyltransferase family 28 C-terminal domain DYQ05_11575 PF03033 Glycosyltransferase family 28 N-terminal domain DYQ05_11585 PF08361 MAATS-type transcriptional repressor, C-terminal region DYQ05_11585 PF00440 Bacterial regulatory proteins, tetR family DYQ05_11590 PF00664 ABC transporter transmembrane region DYQ05_11590 PF08021 Siderophore-interacting FAD-binding domain DYQ05_11590 PF04954 Siderophore-interacting protein DYQ05_11590 PF00005 ABC transporter DYQ05_11620 PF00583 Acetyltransferase (GNAT) family DYQ05_11745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYQ05_11795 PF01479 S4 domain DYQ05_11795 PF00849 RNA pseudouridylate synthase DYQ05_11810 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYQ05_11810 PF13237 4Fe-4S dicluster domain DYQ05_11810 PF13375 RnfC Barrel sandwich hybrid domain DYQ05_11810 PF10531 SLBB domain DYQ05_11840 PF02245 Methylpurine-DNA glycosylase (MPG) DYQ05_11860 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_11865 PF00005 ABC transporter DYQ05_11865 PF17912 MalK OB fold domain DYQ05_11865 PF03459 TOBE domain DYQ05_11870 PF02446 4-alpha-glucanotransferase DYQ05_11875 PF00005 ABC transporter DYQ05_11880 PF00005 ABC transporter DYQ05_11885 PF02576 RimP N-terminal domain DYQ05_11885 PF17384 RimP C-terminal SH3 domain DYQ05_11890 PF13184 NusA-like KH domain DYQ05_11890 PF08529 NusA N-terminal domain DYQ05_11890 PF00575 S1 RNA binding domain DYQ05_11895 PF04760 Translation initiation factor IF-2, N-terminal region DYQ05_11895 PF00009 Elongation factor Tu GTP binding domain DYQ05_11895 PF11987 Translation-initiation factor 2 DYQ05_11900 PF02033 Ribosome-binding factor A DYQ05_11905 PF01509 TruB family pseudouridylate synthase (N terminal domain) DYQ05_11920 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYQ05_11925 PF00164 Ribosomal protein S12/S23 DYQ05_11930 PF00177 Ribosomal protein S7p/S5e DYQ05_11935 PF00877 NlpC/P60 family DYQ05_11940 PF00501 AMP-binding enzyme DYQ05_11940 PF13193 AMP-binding enzyme C-terminal domain DYQ05_11985 PF00005 ABC transporter DYQ05_11990 PF12683 Protein of unknown function (DUF3798) DYQ05_12005 PF01784 NIF3 (NGG1p interacting factor 3) DYQ05_12020 PF02637 GatB domain DYQ05_12020 PF02934 GatB/GatE catalytic domain DYQ05_12025 PF00106 short chain dehydrogenase DYQ05_12030 PF02441 Flavoprotein DYQ05_12030 PF04127 DNA / pantothenate metabolism flavoprotein DYQ05_12050 PF04011 LemA family DYQ05_12055 PF01259 SAICAR synthetase DYQ05_12060 PF00731 AIR carboxylase DYQ05_12075 PF00005 ABC transporter DYQ05_12080 PF00005 ABC transporter DYQ05_12105 PF00691 OmpA family DYQ05_12110 PF00877 NlpC/P60 family DYQ05_12110 PF08239 Bacterial SH3 domain DYQ05_12110 PF01476 LysM domain DYQ05_12125 PF00005 ABC transporter DYQ05_12125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_12130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYQ05_12130 PF00005 ABC transporter DYQ05_12135 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_12135 PF12911 N-terminal TM domain of oligopeptide transport permease C DYQ05_12140 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_12150 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DYQ05_12150 PF00326 Prolyl oligopeptidase family DYQ05_12170 PF01467 Cytidylyltransferase-like DYQ05_12195 PF12627 Probable RNA and SrmB- binding site of polymerase A DYQ05_12195 PF01743 Poly A polymerase head domain DYQ05_12195 PF12626 Polymerase A arginine-rich C-terminus DYQ05_12220 PF01966 HD domain DYQ05_12235 PF02386 Cation transport protein DYQ05_12240 PF02080 TrkA-C domain DYQ05_12240 PF02254 TrkA-N domain DYQ05_12265 PF01168 Alanine racemase, N-terminal domain DYQ05_12265 PF00842 Alanine racemase, C-terminal domain DYQ05_12270 PF02401 LytB protein DYQ05_12275 PF03330 Lytic transglycolase DYQ05_12280 PF00707 Translation initiation factor IF-3, C-terminal domain DYQ05_12280 PF05198 Translation initiation factor IF-3, N-terminal domain DYQ05_12285 PF01632 Ribosomal protein L35 DYQ05_12290 PF00453 Ribosomal protein L20 DYQ05_12300 PF05164 Cell division protein ZapA DYQ05_12305 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DYQ05_12315 PF00005 ABC transporter DYQ05_12320 PF00005 ABC transporter DYQ05_12325 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_12330 PF00528 Binding-protein-dependent transport system inner membrane component DYQ05_12335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYQ05_12340 PF13673 Acetyltransferase (GNAT) domain DYQ05_12350 PF00672 HAMP domain DYQ05_12350 PF02743 Cache domain DYQ05_12350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_12360 PF02719 Polysaccharide biosynthesis protein DYQ05_12375 PF01245 Ribosomal protein L19 DYQ05_12380 PF01746 tRNA (Guanine-1)-methyltransferase DYQ05_12385 PF01782 RimM N-terminal domain DYQ05_12395 PF00886 Ribosomal protein S16 DYQ05_12400 PF05524 PEP-utilising enzyme, N-terminal DYQ05_12400 PF00391 PEP-utilising enzyme, mobile domain DYQ05_12400 PF02896 PEP-utilising enzyme, TIM barrel domain DYQ05_12410 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DYQ05_12410 PF01926 50S ribosome-binding GTPase DYQ05_12420 PF17922 Tetracyclin repressor-like, C-terminal domain DYQ05_12420 PF00440 Bacterial regulatory proteins, tetR family DYQ05_12430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYQ05_12430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYQ05_12430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYQ05_12430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYQ05_12435 PF02308 MgtC family DYQ05_12455 PF00005 ABC transporter DYQ05_12460 PF00905 Penicillin binding protein transpeptidase domain DYQ05_12460 PF00912 Transglycosylase DYQ05_12460 PF06832 Penicillin-Binding Protein C-terminus Family DYQ05_12465 PF05362 Lon protease (S16) C-terminal proteolytic domain DYQ05_12465 PF02190 ATP-dependent protease La (LON) substrate-binding domain DYQ05_12465 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_12480 PF01026 TatD related DNase DYQ05_12490 PF00586 AIR synthase related protein, N-terminal domain DYQ05_12490 PF02769 AIR synthase related protein, C-terminal domain DYQ05_12495 PF00207 Alpha-2-macroglobulin family DYQ05_12495 PF01835 MG2 domain DYQ05_12495 PF07703 Alpha-2-macroglobulin bait region domain DYQ05_12495 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DYQ05_12495 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DYQ05_12495 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DYQ05_12495 PF17962 Bacterial macroglobulin domain 6 DYQ05_12505 PF02674 Colicin V production protein DYQ05_12520 PF10417 C-terminal domain of 1-Cys peroxiredoxin DYQ05_12520 PF00578 AhpC/TSA family DYQ05_12525 PF03372 Endonuclease/Exonuclease/phosphatase family DYQ05_12530 PF00557 Metallopeptidase family M24 DYQ05_12535 PF00684 DnaJ central domain DYQ05_12535 PF01556 DnaJ C terminal domain DYQ05_12535 PF00226 DnaJ domain DYQ05_12550 PF00672 HAMP domain DYQ05_12550 PF00211 Adenylate and Guanylate cyclase catalytic domain DYQ05_12595 PF00830 Ribosomal L28 family DYQ05_12610 PF03193 RsgA GTPase DYQ05_12620 PF00005 ABC transporter DYQ05_12625 PF01032 FecCD transport family DYQ05_12635 PF00005 ABC transporter DYQ05_12635 PF00664 ABC transporter transmembrane region DYQ05_12650 PF00005 ABC transporter DYQ05_12650 PF00664 ABC transporter transmembrane region DYQ05_12660 PF00664 ABC transporter transmembrane region DYQ05_12660 PF00005 ABC transporter DYQ05_12670 PF01196 Ribosomal protein L17 DYQ05_12675 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DYQ05_12675 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DYQ05_12675 PF01000 RNA polymerase Rpb3/RpoA insert domain DYQ05_12680 PF00411 Ribosomal protein S11 DYQ05_12685 PF00416 Ribosomal protein S13/S18 DYQ05_12690 PF00444 Ribosomal protein L36 DYQ05_12695 PF00344 SecY translocase DYQ05_12700 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DYQ05_12705 PF00327 Ribosomal protein L30p/L7e DYQ05_12710 PF03719 Ribosomal protein S5, C-terminal domain DYQ05_12710 PF00333 Ribosomal protein S5, N-terminal domain DYQ05_12715 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DYQ05_12720 PF00347 Ribosomal protein L6 DYQ05_12725 PF00410 Ribosomal protein S8 DYQ05_12730 PF00253 Ribosomal protein S14p/S29e DYQ05_12735 PF00673 ribosomal L5P family C-terminus DYQ05_12735 PF00281 Ribosomal protein L5 DYQ05_12740 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DYQ05_12740 PF00467 KOW motif DYQ05_12745 PF00238 Ribosomal protein L14p/L23e DYQ05_12750 PF00366 Ribosomal protein S17 DYQ05_12755 PF00831 Ribosomal L29 protein DYQ05_12760 PF00252 Ribosomal protein L16p/L10e DYQ05_12765 PF07650 KH domain DYQ05_12765 PF00189 Ribosomal protein S3, C-terminal domain DYQ05_12770 PF00237 Ribosomal protein L22p/L17e DYQ05_12775 PF00203 Ribosomal protein S19 DYQ05_12780 PF03947 Ribosomal Proteins L2, C-terminal domain DYQ05_12780 PF00181 Ribosomal Proteins L2, RNA binding domain DYQ05_12785 PF00276 Ribosomal protein L23 DYQ05_12790 PF00573 Ribosomal protein L4/L1 family DYQ05_12795 PF00297 Ribosomal protein L3 DYQ05_12800 PF00338 Ribosomal protein S10p/S20e DYQ05_12810 PF17863 AAA lid domain DYQ05_12810 PF07726 ATPase family associated with various cellular activities (AAA) DYQ05_12815 PF02511 Thymidylate synthase complementing protein DYQ05_12845 PF00004 ATPase family associated with various cellular activities (AAA) DYQ05_12845 PF01434 Peptidase family M41 DYQ05_12845 PF17862 AAA+ lid domain DYQ05_12865 PF00672 HAMP domain DYQ05_12865 PF02743 Cache domain DYQ05_12865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ05_12880 PF00934 PE family DYQ05_12880 PF07859 alpha/beta hydrolase fold DYQ05_12900 PF00270 DEAD/DEAH box helicase DYQ05_12900 PF17191 RecG wedge domain DYQ05_12900 PF13749 Putative ATP-dependent DNA helicase recG C-terminal DYQ05_12930 PF12848 ABC transporter DYQ05_12930 PF00005 ABC transporter DYQ05_12950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYQ05_12950 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ05_12965 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DYQ05_12965 PF12733 Cadherin-like beta sandwich domain DYQ05_12980 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_12980 PF09820 Predicted AAA-ATPase DYQ05_12990 PF06445 GyrI-like small molecule binding domain DYQ05_12990 PF12833 Helix-turn-helix domain DYQ05_13000 PF13280 WYL domain DYQ05_13000 PF08279 HTH domain DYQ05_13015 PF06445 GyrI-like small molecule binding domain DYQ05_13015 PF12833 Helix-turn-helix domain DYQ05_13035 PF00890 FAD binding domain DYQ05_13035 PF04205 FMN-binding domain DYQ05_13045 PF01032 FecCD transport family DYQ05_13055 PF01497 Periplasmic binding protein DYQ05_13100 PF09820 Predicted AAA-ATPase DYQ05_13100 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_13105 PF13654 AAA domain DYQ05_13105 PF05362 Lon protease (S16) C-terminal proteolytic domain DYQ05_13120 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_13120 PF08448 PAS fold DYQ05_13125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ05_13130 PF05175 Methyltransferase small domain DYQ05_13145 PF13662 Toprim domain DYQ05_13145 PF02132 RecR protein DYQ05_13150 PF02575 YbaB/EbfC DNA-binding family DYQ05_13155 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DYQ05_13155 PF02769 AIR synthase related protein, C-terminal domain DYQ05_13155 PF00586 AIR synthase related protein, N-terminal domain DYQ05_13175 PF00121 Triosephosphate isomerase DYQ05_13180 PF16363 GDP-mannose 4,6 dehydratase DYQ05_13185 PF02772 S-adenosylmethionine synthetase, central domain DYQ05_13185 PF00438 S-adenosylmethionine synthetase, N-terminal domain DYQ05_13185 PF02773 S-adenosylmethionine synthetase, C-terminal domain DYQ05_13190 PF09820 Predicted AAA-ATPase DYQ05_13190 PF08011 PD-(D/E)XK nuclease superfamily DYQ05_13195 PF01554 MatE DYQ05_13200 PF02911 Formyl transferase, C-terminal domain DYQ05_13200 PF00551 Formyl transferase DYQ05_13205 PF01327 Polypeptide deformylase DYQ05_13210 PF00300 Histidine phosphatase superfamily (branch 1) DYQ05_13220 PF03793 PASTA domain DYQ05_13230 PF00772 DnaB-like helicase N terminal domain DYQ05_13230 PF03796 DnaB-like helicase C terminal domain DYQ05_13245 PF01713 Smr domain DYQ05_13245 PF00488 MutS domain V DYQ05_13260 PF00092 von Willebrand factor type A domain DYQ05_13260 PF07584 Aerotolerance regulator N-terminal DYQ05_13265 PF00092 von Willebrand factor type A domain DYQ05_13275 PF01882 Protein of unknown function DUF58 DYQ05_13285 PF17131 Outer membrane lipoprotein-sorting protein DYQ05_13295 PF00440 Bacterial regulatory proteins, tetR family DYQ05_13310 PF00950 ABC 3 transport family DYQ05_13315 PF00005 ABC transporter DYQ05_13320 PF01297 Zinc-uptake complex component A periplasmic DYQ05_13340 PF02146 Sir2 family DYQ05_13345 PF01381 Helix-turn-helix DYQ05_13355 PF03186 CobD/Cbib protein DYQ05_13360 PF00365 Phosphofructokinase DYQ05_13370 PF01751 Toprim domain DYQ05_13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ05_13370 PF00986 DNA gyrase B subunit, carboxyl terminus DYQ05_13370 PF00204 DNA gyrase B DYQ05_13380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DYQ05_13390 PF14804 Jag N-terminus DYQ05_13390 PF01424 R3H domain DYQ05_13395 PF02096 60Kd inner membrane protein DYQ05_13395 PF14849 YidC periplasmic domain DYQ05_13400 PF01809 Putative membrane protein insertion efficiency factor DYQ05_13405 PF00825 Ribonuclease P DYQ05_13410 PF00468 Ribosomal protein L34 DYQ05_13415 PF07670 Nucleoside recognition DYQ05_13420 PF01048 Phosphorylase superfamily DYQ05_13450 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_13450 PF17158 Membrane-associated sensor, integral membrane domain DYQ05_13460 PF00563 EAL domain DYQ05_13460 PF00990 Diguanylate cyclase, GGDEF domain DYQ05_13460 PF03707 Bacterial signalling protein N terminal repeat DYQ05_13475 PF00753 Metallo-beta-lactamase superfamily DYQ05_13475 PF12706 Beta-lactamase superfamily domain DYQ05_13480 PF14841 FliG middle domain DYQ05_13480 PF14842 FliG N-terminal domain DYQ05_13480 PF01706 FliG C-terminal domain DYQ05_13485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ05_13485 PF00460 Flagella basal body rod protein DYQ05_13490 PF10135 Rod binding protein DYQ05_13495 PF01565 FAD binding domain DYQ05_13495 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DYQ05_13540 PF00005 ABC transporter DYQ05_13545 PF00270 DEAD/DEAH box helicase DYQ05_13545 PF00271 Helicase conserved C-terminal domain DYQ05_13545 PF00570 HRDC domain DYQ05_13545 PF16124 RecQ zinc-binding DYQ05_13545 PF09382 RQC domain DYQ05_13555 PF00986 DNA gyrase B subunit, carboxyl terminus DYQ05_13555 PF00204 DNA gyrase B DYQ05_13555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ05_13555 PF01751 Toprim domain