locus-tag	class	description
DYQ05_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DYQ05_00015	COG2235	arginine
DYQ05_00020	COG0017	Asparaginyl-tRNA synthetase
DYQ05_00025	COG1686	Belongs to the peptidase S11 family
DYQ05_00040	COG0840	transmembrane signaling receptor activity
DYQ05_00065	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DYQ05_00095	COG0728	peptidoglycan biosynthetic process
DYQ05_00100	COG0786	glutamate:sodium symporter activity
DYQ05_00120	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DYQ05_00145	COG2885	chlorophyll binding
DYQ05_00150	COG0840	transmembrane signaling receptor activity
DYQ05_00155	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DYQ05_00165	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DYQ05_00170	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DYQ05_00185	COG0574	Belongs to the PEP-utilizing enzyme family
DYQ05_00185	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DYQ05_00200	COG2304	oxidoreductase activity
DYQ05_00210	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DYQ05_00220	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_00225	COG1120	ATPase activity
DYQ05_00250	COG4750	Nucleotidyl transferase
DYQ05_00270	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DYQ05_00275	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_00285	COG0588	phosphoglycerate mutase activity
DYQ05_00300	COG2033	superoxide reductase activity
DYQ05_00310	COG0534	Mate efflux family protein
DYQ05_00620	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_00625	COG0601	transmembrane transport
DYQ05_00635	COG4977	sequence-specific DNA binding
DYQ05_00635	COG1917	Cupin 2, conserved barrel domain protein
DYQ05_00640	COG0840	transmembrane signaling receptor activity
DYQ05_00690	COG0455	bacterial-type flagellum organization
DYQ05_00700	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DYQ05_00730	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DYQ05_00745	COG3949	Membrane
DYQ05_00760	COG0840	transmembrane signaling receptor activity
DYQ05_00765	COG0542	response to heat
DYQ05_00770	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DYQ05_00800	COG2604	Protein of unknown function DUF115
DYQ05_00820	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DYQ05_00835	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DYQ05_00840	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DYQ05_00845	COG0037	tRNA processing
DYQ05_00850	COG0457	Tetratricopeptide repeat
DYQ05_00855	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYQ05_00860	COG1073	alpha beta
DYQ05_00885	COG1373	ATPase (AAA superfamily
DYQ05_00900	COG1086	Polysaccharide biosynthesis protein
DYQ05_00905	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DYQ05_00925	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DYQ05_00930	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DYQ05_00950	COG2089	acid synthase
DYQ05_00955	COG1083	cytidylyl-transferase
DYQ05_00960	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DYQ05_01005	COG3475	LICD family
DYQ05_01050	COG1760	l-serine dehydratase
DYQ05_01055	COG1760	l-serine dehydratase
DYQ05_01060	COG1114	Component of the transport system for branched-chain amino acids
DYQ05_01075	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DYQ05_01145	COG1570	exodeoxyribonuclease VII activity
DYQ05_01155	COG1129	ABC transporter
DYQ05_01160	COG3493	citrate carrier protein
DYQ05_01165	COG1879	ABC-type sugar transport system periplasmic component
DYQ05_01170	COG1840	ABC-type Fe3 transport system, periplasmic component
DYQ05_01175	COG0438	transferase activity, transferring glycosyl groups
DYQ05_01180	COG3842	ATPase activity
DYQ05_01190	COG0148	phosphopyruvate hydratase activity
DYQ05_01200	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYQ05_01205	COG1116	anion transmembrane transporter activity
DYQ05_01250	COG0569	domain protein
DYQ05_01255	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DYQ05_01260	COG0504	CTP synthase activity
DYQ05_01295	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DYQ05_01315	COG0840	transmembrane signaling receptor activity
DYQ05_01365	COG1120	ATPase activity
DYQ05_01465	COG1122	ATPase activity
DYQ05_01470	COG1268	BioY protein
DYQ05_01480	COG1652	LysM domain
DYQ05_01485	COG0516	GMP reductase activity
DYQ05_01485	COG0517	IMP dehydrogenase activity
DYQ05_01500	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
DYQ05_01530	COG0569	domain protein
DYQ05_01535	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DYQ05_01565	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DYQ05_01585	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DYQ05_01605	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DYQ05_01615	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DYQ05_01630	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYQ05_01640	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DYQ05_01675	COG2226	methyltransferase
DYQ05_01730	COG1132	(ABC) transporter
DYQ05_01745	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DYQ05_01750	COG3876	Protein conserved in bacteria
DYQ05_01755	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DYQ05_01770	COG3290	protein histidine kinase activity
DYQ05_01770	COG3829	transcription factor binding
DYQ05_01785	COG1122	ATPase activity
DYQ05_01805	COG1918	ferrous iron import across plasma membrane
DYQ05_01805	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
DYQ05_01870	COG0737	Belongs to the 5'-nucleotidase family
DYQ05_01885	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DYQ05_01895	COG0632	four-way junction helicase activity
DYQ05_01900	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DYQ05_01915	COG0519	Catalyzes the synthesis of GMP from XMP
DYQ05_01940	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
DYQ05_01945	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYQ05_01960	COG0577	efflux transmembrane transporter activity
DYQ05_01960	COG1136	(ABC) transporter
DYQ05_01965	COG1136	(ABC) transporter
DYQ05_01965	COG0577	efflux transmembrane transporter activity
DYQ05_01970	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
DYQ05_01975	COG2217	Heavy metal translocating P-type atpase
DYQ05_01980	COG0525	valine-tRNA ligase activity
DYQ05_01985	COG1132	(ABC) transporter
DYQ05_02000	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DYQ05_02010	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DYQ05_02020	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DYQ05_02025	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DYQ05_02050	COG1924	4 iron, 4 sulfur cluster binding
DYQ05_02055	COG0840	transmembrane signaling receptor activity
DYQ05_02100	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DYQ05_02110	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DYQ05_02115	COG0250	Participates in transcription elongation, termination and antitermination
DYQ05_02120	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DYQ05_02125	COG0081	regulation of translation
DYQ05_02130	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DYQ05_02135	COG0222	ribosome binding
DYQ05_02140	COG0085	RNA polymerase activity
DYQ05_02145	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DYQ05_02180	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DYQ05_02200	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DYQ05_02205	COG4585	Histidine kinase
DYQ05_02220	COG2759	Belongs to the formate--tetrahydrofolate ligase family
DYQ05_02230	COG1363	Peptidase, m42
DYQ05_02245	COG1022	Amp-dependent synthetase and ligase
DYQ05_02255	COG1309	transcriptional regulator
DYQ05_02260	COG0786	glutamate:sodium symporter activity
DYQ05_02265	COG1132	(ABC) transporter
DYQ05_02280	COG1129	ABC transporter
DYQ05_02300	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
DYQ05_02305	COG1394	ATPase activity, coupled to movement of substances
DYQ05_02320	COG1692	metallophosphoesterase
DYQ05_02335	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYQ05_02340	COG1104	cysteine desulfurase activity
DYQ05_02345	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DYQ05_02350	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DYQ05_02355	COG4536	flavin adenine dinucleotide binding
DYQ05_02375	COG4608	Belongs to the ABC transporter superfamily
DYQ05_02380	COG0444	Belongs to the ABC transporter superfamily
DYQ05_02385	COG4166	transmembrane transport
DYQ05_02390	COG0747	negative chemotaxis
DYQ05_02395	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_02400	COG4174	ABC transporter (Permease)
DYQ05_02430	COG2199	diguanylate cyclase activity
DYQ05_02430	COG2203	Gaf domain
DYQ05_02455	COG0800	Aldolase
DYQ05_02520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYQ05_02530	COG0328	RNA-DNA hybrid ribonuclease activity
DYQ05_02535	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DYQ05_02540	COG0301	tRNA thio-modification
DYQ05_02550	COG1131	(ABC) transporter
DYQ05_02565	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DYQ05_02575	COG0326	Molecular chaperone. Has ATPase activity
DYQ05_02595	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DYQ05_02600	COG1509	lysine 2,3-aminomutase activity
DYQ05_02615	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DYQ05_02650	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DYQ05_02655	COG0840	transmembrane signaling receptor activity
DYQ05_02670	COG0084	hydrolase, TatD family'
DYQ05_02675	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DYQ05_02675	COG3116	cell division
DYQ05_02690	COG0716	FMN binding
DYQ05_02705	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DYQ05_02710	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DYQ05_02715	COG1419	protein localization to endoplasmic reticulum
DYQ05_02730	COG1191	sigma factor activity
DYQ05_02760	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYQ05_02765	COG0628	permease
DYQ05_02770	COG0363	glucosamine-6-phosphate deaminase activity
DYQ05_02785	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DYQ05_02795	COG0584	glycerophosphoryl diester phosphodiesterase
DYQ05_02800	COG1040	competence protein
DYQ05_02805	COG0018	arginyl-trna synthetase
DYQ05_02810	COG0714	Associated with various cellular activities
DYQ05_02870	COG0534	Mate efflux family protein
DYQ05_02875	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DYQ05_02880	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DYQ05_02890	COG1338	Plays a role in the flagellum-specific transport system
DYQ05_02900	COG1776	CheC inhibitor of MCP methylation
DYQ05_02900	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DYQ05_02905	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DYQ05_02910	COG1580	Controls the rotational direction of flagella during chemotaxis
DYQ05_02915	COG1360	Flagellar Motor Protein
DYQ05_02920	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
DYQ05_02935	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DYQ05_02975	COG3152	Membrane
DYQ05_02985	COG2887	Belongs to the helicase family. UvrD subfamily
DYQ05_03005	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DYQ05_03030	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DYQ05_03040	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DYQ05_03040	COG1747	RNA polymerase binding
DYQ05_03060	COG0116	Belongs to the methyltransferase superfamily
DYQ05_03155	COG1121	(ABC) transporter
DYQ05_03170	COG3541	Predicted nucleotidyltransferase
DYQ05_03195	COG0737	Belongs to the 5'-nucleotidase family
DYQ05_03205	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
DYQ05_03210	COG0166	Belongs to the GPI family
DYQ05_03215	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DYQ05_03225	COG0318	PFAM AMP-dependent synthetase and ligase
DYQ05_03260	COG1473	amidohydrolase
DYQ05_03280	COG4555	ABC transporter
DYQ05_03310	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
DYQ05_03335	COG1132	(ABC) transporter
DYQ05_03350	COG1129	ABC transporter
DYQ05_03360	COG2207	Transcriptional regulator
DYQ05_03385	COG2357	RelA SpoT domain protein
DYQ05_03390	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DYQ05_03410	COG1755	Isoprenylcysteine carboxyl methyltransferase
DYQ05_03425	COG2239	Acts as a magnesium transporter
DYQ05_03455	COG0556	nucleotide-excision repair
DYQ05_03485	COG1506	peptidase
DYQ05_03485	COG0823	Involved in the tonB-independent uptake of proteins
DYQ05_03485	COG4946	Tricorn protease homolog
DYQ05_03495	COG1228	amidohydrolase
DYQ05_03505	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DYQ05_03520	COG0423	glycine-tRNA ligase activity
DYQ05_03540	COG1472	Belongs to the glycosyl hydrolase 3 family
DYQ05_03560	COG1876	peptidase activity
DYQ05_03565	COG1366	Belongs to the anti-sigma-factor antagonist family
DYQ05_03590	COG1393	Belongs to the ArsC family
DYQ05_03595	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DYQ05_03605	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DYQ05_03610	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DYQ05_03615	COG1115	amino acid carrier protein
DYQ05_03620	COG1254	Belongs to the acylphosphatase family
DYQ05_03650	COG1301	dicarboxylic acid transport
DYQ05_03655	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DYQ05_03665	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DYQ05_03670	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYQ05_03675	COG1690	Belongs to the RtcB family
DYQ05_03680	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DYQ05_03685	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYQ05_03685	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYQ05_03690	COG0095	Lipoate-protein ligase
DYQ05_03695	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DYQ05_03700	COG1305	Transglutaminase-like
DYQ05_03715	COG0215	cysteine-tRNA ligase activity
DYQ05_03725	COG0330	HflC and HflK could
DYQ05_03730	COG2116	formate transmembrane transporter activity
DYQ05_03735	COG0592	DNA-directed DNA polymerase activity
DYQ05_03740	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DYQ05_03775	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DYQ05_03785	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DYQ05_03800	COG1131	(ABC) transporter
DYQ05_03810	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DYQ05_03815	COG0739	heme binding
DYQ05_03825	COG1728	Protein conserved in bacteria
DYQ05_03830	COG1774	PSP1 C-terminal conserved region
DYQ05_03845	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
DYQ05_03855	COG0840	transmembrane signaling receptor activity
DYQ05_03860	COG1013	pyruvate-flavodoxin oxidoreductase activity
DYQ05_03860	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DYQ05_03860	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DYQ05_03860	COG0674	pyruvate-flavodoxin oxidoreductase activity
DYQ05_03865	COG1132	(ABC) transporter
DYQ05_03885	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
DYQ05_03885	COG0540	Belongs to the ATCase OTCase family
DYQ05_03890	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DYQ05_03895	COG1674	ftsk spoiiie
DYQ05_03900	COG1968	undecaprenyl-diphosphatase activity
DYQ05_03910	COG1492	cobalamin metabolic process
DYQ05_03915	COG0445	tRNA wobble uridine modification
DYQ05_03920	COG1362	aminopeptidase activity
DYQ05_03930	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
DYQ05_03940	COG1505	serine-type exopeptidase activity
DYQ05_03950	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DYQ05_03955	COG0351	phosphomethylpyrimidine kinase
DYQ05_03960	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
DYQ05_03975	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DYQ05_03990	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DYQ05_04000	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DYQ05_04005	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DYQ05_04020	COG4608	Belongs to the ABC transporter superfamily
DYQ05_04025	COG0444	Belongs to the ABC transporter superfamily
DYQ05_04030	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_04035	COG0601	transmembrane transport
DYQ05_04040	COG3588	fructose-bisphosphate aldolase
DYQ05_04055	COG4115	mRNA cleavage
DYQ05_04065	COG4115	mRNA cleavage
DYQ05_04075	COG3735	TraB family
DYQ05_04090	COG1983	PspC domain protein
DYQ05_04095	COG1516	flagellar protein fliS
DYQ05_04110	COG0840	transmembrane signaling receptor activity
DYQ05_04135	COG1132	(ABC) transporter
DYQ05_04150	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DYQ05_04160	COG1120	ATPase activity
DYQ05_04165	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_04170	COG2226	methyltransferase
DYQ05_04260	COG0167	dihydroorotate dehydrogenase activity
DYQ05_04275	COG0701	Predicted permease
DYQ05_04285	COG0587	DNA-directed DNA polymerase activity
DYQ05_04290	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ05_04305	COG4555	ABC transporter
DYQ05_04330	COG0730	response to heat
DYQ05_04340	COG1959	2 iron, 2 sulfur cluster binding
DYQ05_04345	COG2910	NAD(P)H-binding
DYQ05_04350	COG2089	acid synthase
DYQ05_04365	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DYQ05_04390	COG1120	ATPase activity
DYQ05_04430	COG1696	Membrane protein involved in D-alanine export
DYQ05_04440	COG0783	Belongs to the Dps family
DYQ05_04445	COG0840	transmembrane signaling receptor activity
DYQ05_04465	COG0425	Belongs to the sulfur carrier protein TusA family
DYQ05_04490	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYQ05_04505	COG1136	(ABC) transporter
DYQ05_04510	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
DYQ05_04530	COG0629	single-stranded DNA binding
DYQ05_04535	COG1691	(AIR) carboxylase
DYQ05_04565	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_04570	COG0444	Belongs to the ABC transporter superfamily
DYQ05_04575	COG4172	Belongs to the ABC transporter superfamily
DYQ05_04580	COG1132	(ABC) transporter
DYQ05_04610	COG1185	polyribonucleotide nucleotidyltransferase activity
DYQ05_04615	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DYQ05_04620	COG0196	riboflavin kinase activity
DYQ05_04625	COG0840	transmembrane signaling receptor activity
DYQ05_04650	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DYQ05_04665	COG2233	PERMEase
DYQ05_04680	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DYQ05_04705	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DYQ05_04730	COG0546	phosphoglycolate phosphatase activity
DYQ05_04735	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DYQ05_04740	COG4166	transmembrane transport
DYQ05_04905	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DYQ05_04915	COG1606	tRNA processing
DYQ05_04920	COG1132	(ABC) transporter
DYQ05_04925	COG1132	(ABC) transporter
DYQ05_04930	COG1132	(ABC) transporter
DYQ05_04950	COG1475	DNA binding
DYQ05_04955	COG1192	Involved in chromosome partitioning
DYQ05_04960	COG0840	transmembrane signaling receptor activity
DYQ05_04970	COG1802	Transcriptional regulator
DYQ05_04990	COG0511	ligase activity, forming carbon-carbon bonds
DYQ05_04995	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
DYQ05_05005	COG2301	Belongs to the HpcH HpaI aldolase family
DYQ05_05010	COG3051	citrate lyase alpha subunit
DYQ05_05025	COG0616	signal peptide processing
DYQ05_05030	COG0012	GTP binding
DYQ05_05045	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DYQ05_05050	COG1744	ABC transporter substrate-binding protein PnrA-like
DYQ05_05055	COG3845	ABC transporter
DYQ05_05060	COG4603	Belongs to the binding-protein-dependent transport system permease family
DYQ05_05065	COG1079	Belongs to the binding-protein-dependent transport system permease family
DYQ05_05075	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DYQ05_05085	COG1132	(ABC) transporter
DYQ05_05110	COG0280	phosphate acetyltransferase
DYQ05_05115	COG0457	Tetratricopeptide repeat
DYQ05_05125	COG0542	response to heat
DYQ05_05130	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DYQ05_05140	COG0101	tRNA pseudouridine synthase activity
DYQ05_05150	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
DYQ05_05165	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DYQ05_05175	COG0840	transmembrane signaling receptor activity
DYQ05_05180	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DYQ05_05190	COG0544	peptidyl-prolyl cis-trans isomerase activity
DYQ05_05205	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DYQ05_05210	COG2211	Major facilitator Superfamily
DYQ05_05220	COG2201	protein-glutamate methylesterase activity
DYQ05_05230	COG0835	chemotaxis
DYQ05_05235	COG0643	Histidine kinase
DYQ05_05235	COG2198	Histidine kinase
DYQ05_05250	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DYQ05_05265	COG0316	Belongs to the HesB IscA family
DYQ05_05265	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DYQ05_05270	COG0756	dUTP diphosphatase activity
DYQ05_05275	COG3330	Domain of unknown function (DUF4912)
DYQ05_05290	COG0543	2 iron, 2 sulfur cluster binding
DYQ05_05305	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DYQ05_05315	COG2080	2 iron, 2 sulfur cluster binding
DYQ05_05330	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DYQ05_05335	COG1987	bacterial-type flagellum assembly
DYQ05_05340	COG1684	flagellar biosynthetic protein fliR
DYQ05_05345	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DYQ05_05365	COG2217	Heavy metal translocating P-type atpase
DYQ05_05375	COG3829	transcription factor binding
DYQ05_05395	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DYQ05_05410	COG4545	Glutaredoxin-related protein
DYQ05_05435	COG0739	heme binding
DYQ05_05440	COG1418	mRNA catabolic process
DYQ05_05475	COG4139	cobalamin transport
DYQ05_05480	COG1120	ATPase activity
DYQ05_05500	COG1132	(ABC) transporter
DYQ05_05545	COG1120	ATPase activity
DYQ05_05560	COG0840	transmembrane signaling receptor activity
DYQ05_05595	COG0840	transmembrane signaling receptor activity
DYQ05_05600	COG4656	Part of a membrane complex involved in electron transport
DYQ05_05605	COG4658	electron transport chain
DYQ05_05610	COG4659	FMN binding
DYQ05_05615	COG4660	Part of a membrane complex involved in electron transport
DYQ05_05640	COG0792	nuclease activity
DYQ05_05650	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DYQ05_05660	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DYQ05_05670	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DYQ05_05680	COG0357	Ribosomal RNA small subunit methyltransferase G
DYQ05_05685	COG1012	belongs to the aldehyde dehydrogenase family
DYQ05_05690	COG1757	Na H antiporter
DYQ05_05695	COG4865	methylaspartate mutase activity
DYQ05_05700	COG1104	cysteine desulfurase activity
DYQ05_05715	COG0724	RNA recognition motif
DYQ05_05725	COG0534	Mate efflux family protein
DYQ05_05730	COG0420	3'-5' exonuclease activity
DYQ05_05735	COG0419	ATPase involved in DNA repair
DYQ05_05760	COG1187	pseudouridine synthase activity
DYQ05_05800	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DYQ05_05805	COG0154	amidase activity
DYQ05_05825	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYQ05_05840	COG0426	domain, Protein
DYQ05_05840	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DYQ05_05860	COG3118	belongs to the thioredoxin family
DYQ05_05885	COG1047	Peptidyl-prolyl cis-trans
DYQ05_05920	COG0644	oxidoreductase
DYQ05_05925	COG2226	methyltransferase
DYQ05_05935	COG0142	geranyltranstransferase activity
DYQ05_05955	COG0003	Pfam Anion-transporting ATPase
DYQ05_05960	COG0003	Pfam Anion-transporting ATPase
DYQ05_05965	COG1620	l-lactate permease
DYQ05_05975	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DYQ05_06120	COG2361	Protein of unknown function DUF86
DYQ05_06135	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
DYQ05_06190	COG0588	phosphoglycerate mutase activity
DYQ05_06200	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DYQ05_06220	COG3177	Filamentation induced by cAMP protein fic
DYQ05_06300	COG0813	purine-nucleoside phosphorylase activity
DYQ05_06495	COG1132	(ABC) transporter
DYQ05_06500	COG0535	radical SAM domain protein
DYQ05_06530	COG0656	L-ascorbic acid biosynthetic process
DYQ05_06555	COG0840	transmembrane signaling receptor activity
DYQ05_06585	COG2207	Transcriptional regulator
DYQ05_06595	COG1132	(ABC) transporter
DYQ05_06635	COG2855	membrane
DYQ05_06645	COG1129	ABC transporter
DYQ05_06660	COG0126	phosphoglycerate kinase activity
DYQ05_06675	COG1079	Belongs to the binding-protein-dependent transport system permease family
DYQ05_06680	COG4603	Belongs to the binding-protein-dependent transport system permease family
DYQ05_06685	COG3845	ABC transporter
DYQ05_06690	COG1744	ABC transporter substrate-binding protein PnrA-like
DYQ05_06695	COG2342	PFAM TM1410 hypothetical-related protein
DYQ05_06730	COG0268	Binds directly to 16S ribosomal RNA
DYQ05_06740	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DYQ05_06750	COG1058	Belongs to the CinA family
DYQ05_06750	COG1546	Belongs to the CinA family
DYQ05_06760	COG3681	Belongs to the UPF0597 family
DYQ05_06765	COG0840	transmembrane signaling receptor activity
DYQ05_06770	COG0617	tRNA 3'-terminal CCA addition
DYQ05_06790	COG1132	(ABC) transporter
DYQ05_06795	COG1132	(ABC) transporter
DYQ05_06825	COG0343	queuine tRNA-ribosyltransferase activity
DYQ05_06845	COG0359	binds to the 23S rRNA
DYQ05_06850	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DYQ05_06855	COG0629	single-stranded DNA binding
DYQ05_06860	COG0360	Binds together with S18 to 16S ribosomal RNA
DYQ05_06885	COG3209	COG3209 Rhs family protein
DYQ05_06885	COG4104	PAAR repeat-containing protein
DYQ05_06895	COG4104	PAAR repeat-containing protein
DYQ05_06895	COG3209	COG3209 Rhs family protein
DYQ05_06900	COG2252	PERMEase
DYQ05_06915	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
DYQ05_06925	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DYQ05_06930	COG0071	Belongs to the small heat shock protein (HSP20) family
DYQ05_06940	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DYQ05_06965	COG1132	(ABC) transporter
DYQ05_06970	COG1132	(ABC) transporter
DYQ05_06975	COG1120	ATPase activity
DYQ05_06980	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_06985	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DYQ05_06990	COG0840	transmembrane signaling receptor activity
DYQ05_06995	COG2201	protein-glutamate methylesterase activity
DYQ05_07015	COG1137	ATPase activity
DYQ05_07020	COG1053	succinate dehydrogenase
DYQ05_07020	COG3976	FMN-binding domain protein
DYQ05_07020	COG0431	NADPH-dependent FMN reductase
DYQ05_07025	COG1418	mRNA catabolic process
DYQ05_07035	COG2195	Cleaves the N-terminal amino acid of tripeptides
DYQ05_07040	COG0124	histidyl-tRNA synthetase
DYQ05_07050	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
DYQ05_07070	COG3706	GGDEF domain
DYQ05_07135	COG3033	Beta-eliminating lyase
DYQ05_07140	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
DYQ05_07150	COG3639	organic phosphonate transmembrane transporter activity
DYQ05_07155	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
DYQ05_07175	COG0019	diaminopimelate decarboxylase activity
DYQ05_07195	COG0444	Belongs to the ABC transporter superfamily
DYQ05_07200	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_07205	COG0601	transmembrane transport
DYQ05_07210	COG0747	negative chemotaxis
DYQ05_07215	COG0840	transmembrane signaling receptor activity
DYQ05_07235	COG4106	trans-aconitate 2-methyltransferase activity
DYQ05_07240	COG1269	ATP hydrolysis coupled proton transport
DYQ05_07255	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYQ05_07255	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DYQ05_07255	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DYQ05_07260	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DYQ05_07270	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DYQ05_07275	COG2890	protein-(glutamine-N5) methyltransferase activity
DYQ05_07285	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DYQ05_07290	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DYQ05_07295	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DYQ05_07300	COG2088	sporulation resulting in formation of a cellular spore
DYQ05_07310	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DYQ05_07315	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DYQ05_07325	COG1592	Rubrerythrin
DYQ05_07330	COG1283	sodium-dependent phosphate transmembrane transporter activity
DYQ05_07350	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DYQ05_07355	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DYQ05_07405	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DYQ05_07415	COG0719	Fe-S assembly protein
DYQ05_07425	COG0583	DNA-binding transcription factor activity
DYQ05_07430	COG1131	(ABC) transporter
DYQ05_07440	COG0495	leucyl-tRNA aminoacylation
DYQ05_07470	COG1196	nuclear chromosome segregation
DYQ05_07480	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYQ05_07860	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DYQ05_07875	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_07895	COG1181	Belongs to the D-alanine--D-alanine ligase family
DYQ05_07905	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DYQ05_07905	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DYQ05_07910	COG1102	Psort location Cytoplasmic, score
DYQ05_07915	COG1561	YicC-like family, N-terminal region
DYQ05_07925	COG0285	dihydrofolate synthase activity
DYQ05_07930	COG0564	pseudouridine synthase activity
DYQ05_07945	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DYQ05_07960	COG0803	Belongs to the bacterial solute-binding protein 9 family
DYQ05_07965	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DYQ05_07975	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DYQ05_07975	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DYQ05_07980	COG0741	lytic transglycosylase activity
DYQ05_07980	COG0739	heme binding
DYQ05_07980	COG1196	nuclear chromosome segregation
DYQ05_07990	COG1595	DNA-templated transcription, initiation
DYQ05_08005	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
DYQ05_08010	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DYQ05_08015	COG1966	Carbon starvation protein
DYQ05_08020	COG3956	TIGRFAM MazG family protein
DYQ05_08035	COG0793	Belongs to the peptidase S41A family
DYQ05_08040	COG0534	Mate efflux family protein
DYQ05_08050	COG0549	Belongs to the carbamate kinase family
DYQ05_08060	COG0823	Involved in the tonB-independent uptake of proteins
DYQ05_08070	COG1199	ATP-dependent helicase activity
DYQ05_08310	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
DYQ05_08330	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DYQ05_08365	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DYQ05_08370	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
DYQ05_08390	COG0237	dephospho-CoA kinase activity
DYQ05_08395	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DYQ05_08395	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DYQ05_08395	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DYQ05_08410	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
DYQ05_08440	COG0398	Pfam SNARE associated Golgi protein
DYQ05_08450	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DYQ05_08460	COG0668	transmembrane transport
DYQ05_08490	COG2897	thiosulfate sulfurtransferase activity
DYQ05_08545	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DYQ05_08550	COG0358	DNA primase activity
DYQ05_08555	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DYQ05_08575	COG1077	Cell shape determining protein MreB Mrl
DYQ05_08590	COG0768	penicillin binding
DYQ05_08595	COG0772	Belongs to the SEDS family
DYQ05_08615	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
DYQ05_08620	COG0840	transmembrane signaling receptor activity
DYQ05_08630	COG1269	ATP hydrolysis coupled proton transport
DYQ05_08635	COG1394	ATPase activity, coupled to movement of substances
DYQ05_08640	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
DYQ05_08645	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
DYQ05_08650	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DYQ05_08675	COG1794	racemase activity, acting on amino acids and derivatives
DYQ05_08710	COG0217	transcriptional regulatory protein
DYQ05_08715	COG0138	bifunctional purine biosynthesis protein purh
DYQ05_08725	COG1362	aminopeptidase activity
DYQ05_08745	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DYQ05_08755	COG1115	amino acid carrier protein
DYQ05_08770	COG0799	negative regulation of ribosome biogenesis
DYQ05_08775	COG2059	Chromate
DYQ05_08795	COG1480	7TM receptor with intracellular HD hydrolase
DYQ05_08800	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DYQ05_08810	COG2885	chlorophyll binding
DYQ05_08815	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DYQ05_08825	COG1266	CAAX protease self-immunity
DYQ05_08850	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DYQ05_08865	COG0509	glycine decarboxylation via glycine cleavage system
DYQ05_08875	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DYQ05_08880	COG1722	exodeoxyribonuclease VII activity
DYQ05_08885	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DYQ05_08930	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DYQ05_08940	COG1773	rubredoxin
DYQ05_08960	COG1692	metallophosphoesterase
DYQ05_08970	COG0142	geranyltranstransferase activity
DYQ05_08985	COG4555	ABC transporter
DYQ05_09020	COG1115	amino acid carrier protein
DYQ05_09030	COG2195	Cleaves the N-terminal amino acid of tripeptides
DYQ05_09040	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DYQ05_09045	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DYQ05_09065	COG0156	8-amino-7-oxononanoate synthase activity
DYQ05_09085	COG1363	Peptidase, m42
DYQ05_09090	COG0281	malic enzyme
DYQ05_09105	COG2738	Putative neutral zinc metallopeptidase
DYQ05_09110	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DYQ05_09110	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
DYQ05_09125	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
DYQ05_09130	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DYQ05_09145	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DYQ05_09150	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DYQ05_09180	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DYQ05_09185	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DYQ05_09185	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DYQ05_09190	COG1329	Transcriptional regulator
DYQ05_09205	COG0577	efflux transmembrane transporter activity
DYQ05_09205	COG1136	(ABC) transporter
DYQ05_09215	COG1136	(ABC) transporter
DYQ05_09215	COG0577	efflux transmembrane transporter activity
DYQ05_09225	COG0009	L-threonylcarbamoyladenylate synthase
DYQ05_09275	COG2204	response regulator
DYQ05_09280	COG0539	negative regulation of cytoplasmic translation
DYQ05_09305	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DYQ05_09345	COG1388	LysM domain
DYQ05_09350	COG1757	Na H antiporter
DYQ05_09355	COG0626	cystathionine gamma-synthase activity
DYQ05_09375	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DYQ05_09390	COG0488	(ABC) transporter
DYQ05_09395	COG2723	6-phospho-beta-galactosidase activity
DYQ05_09415	COG0557	exoribonuclease II activity
DYQ05_09440	COG2017	converts alpha-aldose to the beta-anomer
DYQ05_09450	COG1162	GTPase activity
DYQ05_09465	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
DYQ05_09470	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DYQ05_09480	COG2255	four-way junction helicase activity
DYQ05_09490	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
DYQ05_09505	COG3880	PFAM UvrB UvrC protein
DYQ05_09515	COG1136	(ABC) transporter
DYQ05_09530	COG0552	protein localization to endoplasmic reticulum
DYQ05_09560	COG0840	transmembrane signaling receptor activity
DYQ05_09565	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DYQ05_09580	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DYQ05_09585	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DYQ05_09595	COG2056	Na+-H+ antiporter family
DYQ05_09610	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DYQ05_09615	COG1309	transcriptional regulator
DYQ05_09625	COG1129	ABC transporter
DYQ05_09640	COG0488	(ABC) transporter
DYQ05_09670	COG4608	Belongs to the ABC transporter superfamily
DYQ05_09685	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_09690	COG0601	transmembrane transport
DYQ05_09700	COG0312	modulator of DNA gyrase
DYQ05_09720	COG2604	Protein of unknown function DUF115
DYQ05_09725	COG0484	heat shock protein binding
DYQ05_09730	COG0443	Heat shock 70 kDa protein
DYQ05_09735	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DYQ05_09740	COG0284	orotidine-5'-phosphate decarboxylase activity
DYQ05_09750	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DYQ05_09765	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DYQ05_09775	COG0825	malonyl-CoA metabolic process
DYQ05_09780	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
DYQ05_09785	COG0439	Biotin carboxylase
DYQ05_09790	COG0511	ligase activity, forming carbon-carbon bonds
DYQ05_09795	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DYQ05_09800	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DYQ05_09805	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ05_09810	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DYQ05_09815	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DYQ05_09825	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DYQ05_09850	COG0330	HflC and HflK could
DYQ05_09855	COG0330	HflC and HflK could
DYQ05_09885	COG0835	chemotaxis
DYQ05_09895	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DYQ05_09900	COG1132	(ABC) transporter
DYQ05_09910	COG2084	Dehydrogenase
DYQ05_09915	COG2986	histidine ammonia-lyase
DYQ05_09925	COG1131	(ABC) transporter
DYQ05_09940	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DYQ05_10090	COG0442	prolyl-tRNA aminoacylation
DYQ05_10095	COG4608	Belongs to the ABC transporter superfamily
DYQ05_10100	COG0444	Belongs to the ABC transporter superfamily
DYQ05_10105	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_10110	COG0601	transmembrane transport
DYQ05_10115	COG4166	transmembrane transport
DYQ05_10140	COG3216	Uncharacterized protein conserved in bacteria (DUF2062)
DYQ05_10145	COG0297	glycogen (starch) synthase activity
DYQ05_10155	COG4475	Protein of unknown function (DUF436)
DYQ05_10170	COG1472	Belongs to the glycosyl hydrolase 3 family
DYQ05_10185	COG1157	protein secretion by the type III secretion system
DYQ05_10190	COG1317	bacterial-type flagellum organization
DYQ05_10200	COG1766	The M ring may be actively involved in energy transduction
DYQ05_10205	COG1677	Flagellar hook-basal body complex protein FliE
DYQ05_10220	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DYQ05_10225	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DYQ05_10230	COG4974	Belongs to the 'phage' integrase family
DYQ05_10235	COG0551	DNA topoisomerase type I activity
DYQ05_10235	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DYQ05_10240	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DYQ05_10240	COG0758	DNA mediated transformation
DYQ05_10255	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DYQ05_10270	COG0772	Belongs to the SEDS family
DYQ05_10275	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DYQ05_10290	COG2001	Belongs to the MraZ family
DYQ05_10315	COG0513	Belongs to the DEAD box helicase family
DYQ05_10335	COG1739	Uncharacterized protein family UPF0029
DYQ05_10355	COG0747	negative chemotaxis
DYQ05_10360	COG0601	transmembrane transport
DYQ05_10365	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_10380	COG2226	methyltransferase
DYQ05_10385	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DYQ05_10395	COG0481	GTPase activity
DYQ05_10415	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DYQ05_10425	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DYQ05_10430	COG0233	cytoplasmic translational termination
DYQ05_10435	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DYQ05_10440	COG0052	Belongs to the universal ribosomal protein uS2 family
DYQ05_10475	COG3209	COG3209 Rhs family protein
DYQ05_10475	COG4104	PAAR repeat-containing protein
DYQ05_10525	COG3209	COG3209 Rhs family protein
DYQ05_10535	COG4104	PAAR repeat-containing protein
DYQ05_10535	COG3209	COG3209 Rhs family protein
DYQ05_10550	COG4104	PAAR repeat-containing protein
DYQ05_10550	COG3209	COG3209 Rhs family protein
DYQ05_10585	COG0312	modulator of DNA gyrase
DYQ05_10590	COG3052	prosthetic group binding
DYQ05_10600	COG3051	citrate lyase alpha subunit
DYQ05_10615	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DYQ05_10620	COG0484	heat shock protein binding
DYQ05_10625	COG0528	UMP kinase activity
DYQ05_10630	COG0736	holo-[acyl-carrier-protein] synthase activity
DYQ05_10640	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
DYQ05_10645	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DYQ05_10650	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYQ05_10655	COG0424	maF-like protein
DYQ05_10660	COG1413	lyase activity
DYQ05_10670	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DYQ05_10675	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DYQ05_10680	COG1334	flagellar protein FlaG
DYQ05_10685	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
DYQ05_10685	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
DYQ05_10700	COG0802	atpase or kinase
DYQ05_10710	COG3437	response regulator, receiver
DYQ05_10715	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYQ05_10720	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DYQ05_10725	COG2204	response regulator
DYQ05_10785	COG0731	radical SAM domain protein
DYQ05_10810	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
DYQ05_10815	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DYQ05_10835	COG1053	succinate dehydrogenase
DYQ05_10870	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
DYQ05_10875	COG3118	belongs to the thioredoxin family
DYQ05_10880	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DYQ05_10915	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DYQ05_10930	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DYQ05_10935	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DYQ05_10940	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DYQ05_10970	COG0193	aminoacyl-tRNA hydrolase activity
DYQ05_11000	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DYQ05_11035	COG0653	protein targeting
DYQ05_11050	COG3706	GGDEF domain
DYQ05_11075	COG1639	'signal transduction protein
DYQ05_11085	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYQ05_11090	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DYQ05_11095	COG1477	protein flavinylation
DYQ05_11100	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DYQ05_11145	COG0493	'glutamate synthase
DYQ05_11145	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DYQ05_11155	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DYQ05_11160	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DYQ05_11175	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
DYQ05_11195	COG0459	protein refolding
DYQ05_11205	COG5341	Protein conserved in bacteria
DYQ05_11210	COG1136	(ABC) transporter
DYQ05_11210	COG0577	efflux transmembrane transporter activity
DYQ05_11215	COG0826	peptidase U32
DYQ05_11225	COG1132	(ABC) transporter
DYQ05_11250	COG1122	ATPase activity
DYQ05_11265	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DYQ05_11270	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DYQ05_11320	COG1131	(ABC) transporter
DYQ05_11325	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DYQ05_11330	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DYQ05_11335	COG1862	Preprotein translocase
DYQ05_11340	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DYQ05_11345	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DYQ05_11350	COG0571	ribonuclease III activity
DYQ05_11355	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DYQ05_11360	COG1573	uracil-dna glycosylase
DYQ05_11370	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DYQ05_11375	COG0563	adenylate kinase activity
DYQ05_11395	COG0739	heme binding
DYQ05_11430	COG0556	nucleotide-excision repair
DYQ05_11435	COG0254	rRNA binding
DYQ05_11475	COG2217	Heavy metal translocating P-type atpase
DYQ05_11480	COG0640	Transcriptional regulator
DYQ05_11500	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
DYQ05_11505	COG3437	response regulator, receiver
DYQ05_11505	COG0784	Response regulator, receiver
DYQ05_11510	COG1921	L-seryl-tRNASec selenium transferase activity
DYQ05_11515	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DYQ05_11525	COG2003	Belongs to the UPF0758 family
DYQ05_11535	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DYQ05_11545	COG1132	(ABC) transporter
DYQ05_11550	COG0457	Tetratricopeptide repeat
DYQ05_11575	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DYQ05_11620	COG0456	acetyltransferase
DYQ05_11795	COG0564	pseudouridine synthase activity
DYQ05_11810	COG4656	Part of a membrane complex involved in electron transport
DYQ05_11860	COG3833	ABC-type maltose transport systems, permease component
DYQ05_11865	COG3842	ATPase activity
DYQ05_11870	COG1640	4-alpha-glucanotransferase
DYQ05_11885	COG0779	Required for maturation of 30S ribosomal subunits
DYQ05_11895	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DYQ05_11900	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DYQ05_11905	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DYQ05_11925	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DYQ05_11930	COG0049	tRNA binding
DYQ05_11935	COG0791	NLP P60 protein
DYQ05_11940	COG0318	PFAM AMP-dependent synthetase and ligase
DYQ05_11990	COG1609	Transcriptional regulator
DYQ05_12005	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DYQ05_12020	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DYQ05_12025	COG0300	oxidoreductase activity
DYQ05_12030	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DYQ05_12050	COG1704	LemA family
DYQ05_12055	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DYQ05_12060	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DYQ05_12125	COG4608	Belongs to the ABC transporter superfamily
DYQ05_12130	COG0444	Belongs to the ABC transporter superfamily
DYQ05_12135	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_12140	COG0601	transmembrane transport
DYQ05_12150	COG1505	serine-type exopeptidase activity
DYQ05_12170	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DYQ05_12195	COG0617	tRNA 3'-terminal CCA addition
DYQ05_12220	COG1078	dGTPase activity
DYQ05_12230	COG0047	phosphoribosylformylglycinamidine synthase activity
DYQ05_12235	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DYQ05_12240	COG0569	domain protein
DYQ05_12265	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DYQ05_12270	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DYQ05_12275	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DYQ05_12285	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DYQ05_12290	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DYQ05_12300	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
DYQ05_12305	COG1671	Belongs to the UPF0178 family
DYQ05_12320	COG0444	Belongs to the ABC transporter superfamily
DYQ05_12325	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DYQ05_12330	COG0601	transmembrane transport
DYQ05_12335	COG0747	negative chemotaxis
DYQ05_12375	COG0335	large ribosomal subunit rRNA binding
DYQ05_12380	COG0336	Belongs to the RNA methyltransferase TrmD family
DYQ05_12385	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DYQ05_12390	COG1837	Belongs to the UPF0109 family
DYQ05_12395	COG0228	four-way junction DNA binding
DYQ05_12400	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DYQ05_12420	COG1309	transcriptional regulator
DYQ05_12430	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYQ05_12435	COG1285	pathogenesis
DYQ05_12455	COG1131	(ABC) transporter
DYQ05_12460	COG4953	penicillin-binding protein 1C
DYQ05_12465	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DYQ05_12480	COG0084	hydrolase, TatD family'
DYQ05_12490	COG0709	Synthesizes selenophosphate from selenide and ATP
DYQ05_12505	COG1286	toxin biosynthetic process
DYQ05_12520	COG0450	alkyl hydroperoxide reductase
DYQ05_12525	COG0708	Exodeoxyribonuclease III
DYQ05_12530	COG0024	Methionine aminopeptidase
DYQ05_12535	COG0484	heat shock protein binding
DYQ05_12595	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DYQ05_12610	COG1162	GTPase activity
DYQ05_12625	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_12660	COG1132	(ABC) transporter
DYQ05_12670	COG0203	ribosomal protein L17
DYQ05_12675	COG0202	RNA polymerase activity
DYQ05_12680	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DYQ05_12685	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DYQ05_12690	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DYQ05_12700	COG0200	Binds to the 23S rRNA
DYQ05_12705	COG1841	ribosomal large subunit assembly
DYQ05_12710	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DYQ05_12715	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DYQ05_12720	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DYQ05_12725	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DYQ05_12730	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DYQ05_12735	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DYQ05_12740	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DYQ05_12745	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DYQ05_12750	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DYQ05_12755	COG0255	Belongs to the universal ribosomal protein uL29 family
DYQ05_12760	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DYQ05_12765	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DYQ05_12770	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DYQ05_12775	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DYQ05_12780	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DYQ05_12785	COG0089	rRNA binding
DYQ05_12790	COG0088	Forms part of the polypeptide exit tunnel
DYQ05_12795	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DYQ05_12800	COG0051	transcription antitermination factor activity, RNA binding
DYQ05_12810	COG0714	Associated with various cellular activities
DYQ05_12815	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
DYQ05_12845	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DYQ05_12865	COG0840	transmembrane signaling receptor activity
DYQ05_12880	COG0657	acetylesterase activity
DYQ05_12930	COG0488	(ABC) transporter
DYQ05_12950	COG0446	pyridine nucleotide-disulphide oxidoreductase
DYQ05_12990	COG3708	Transcriptional regulator
DYQ05_12990	COG2207	Transcriptional regulator
DYQ05_13000	COG2378	regulation of single-species biofilm formation
DYQ05_13015	COG3708	Transcriptional regulator
DYQ05_13015	COG2207	Transcriptional regulator
DYQ05_13035	COG1053	succinate dehydrogenase
DYQ05_13035	COG3976	FMN-binding domain protein
DYQ05_13045	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DYQ05_13055	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
DYQ05_13105	COG1067	ATP-dependent peptidase activity
DYQ05_13120	COG2199	diguanylate cyclase activity
DYQ05_13145	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DYQ05_13150	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DYQ05_13155	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DYQ05_13175	COG0149	triose-phosphate isomerase activity
DYQ05_13180	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DYQ05_13185	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DYQ05_13195	COG0534	Mate efflux family protein
DYQ05_13200	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DYQ05_13210	COG0588	phosphoglycerate mutase activity
DYQ05_13230	COG0305	Participates in initiation and elongation during chromosome replication
DYQ05_13245	COG1193	negative regulation of DNA recombination
DYQ05_13260	COG2304	oxidoreductase activity
DYQ05_13285	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
DYQ05_13310	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DYQ05_13315	COG1121	(ABC) transporter
DYQ05_13320	COG0803	Belongs to the bacterial solute-binding protein 9 family
DYQ05_13340	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DYQ05_13345	COG3093	addiction module antidote protein HigA
DYQ05_13360	COG0205	6-phosphofructokinase activity
DYQ05_13380	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DYQ05_13390	COG1847	R3H domain protein
DYQ05_13395	COG0706	membrane insertase activity
DYQ05_13400	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DYQ05_13405	COG0594	ribonuclease P activity
DYQ05_13410	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DYQ05_13415	COG3314	Sporulation integral membrane protein YlbJ
DYQ05_13420	COG0813	purine-nucleoside phosphorylase activity
DYQ05_13450	COG3706	GGDEF domain
DYQ05_13475	COG1234	tRNA 3'-trailer cleavage
DYQ05_13490	COG3951	Flagellar rod assembly protein muramidase FlgJ
DYQ05_13495	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DYQ05_13540	COG3842	ATPase activity
DYQ05_13545	COG0514	ATP-dependent DNA helicase (RecQ)
DYQ05_13555	COG0187	DNA topoisomerase II activity