locus-tag class description TREPR_0001 PF01757 Acyltransferase family TREPR_0003 PF03062 MBOAT, membrane-bound O-acyltransferase family TREPR_0006 PF02719 Polysaccharide biosynthesis protein TREPR_0007 PF02397 Bacterial sugar transferase TREPR_0008 PF01370 NAD dependent epimerase/dehydratase family TREPR_0009 PF00535 Glycosyl transferase family 2 TREPR_0020 PF00535 Glycosyl transferase family 2 TREPR_0033 PF01048 Phosphorylase superfamily TREPR_0035 PF01008 Initiation factor 2 subunit family TREPR_0039 PF00817 impB/mucB/samB family TREPR_0039 PF11799 impB/mucB/samB family C-terminal domain TREPR_0039 PF11798 IMS family HHH motif TREPR_0040 PF00288 GHMP kinases N terminal domain TREPR_0040 PF08544 GHMP kinases C terminal TREPR_0040 PF10509 Galactokinase galactose-binding signature TREPR_0045 PF03781 Sulfatase-modifying factor enzyme 1 TREPR_0049 PF00004 ATPase family associated with various cellular activities (AAA) TREPR_0049 PF01434 Peptidase family M41 TREPR_0049 PF17862 AAA+ lid domain TREPR_0052 PF00672 HAMP domain TREPR_0052 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_0057 PF00132 Bacterial transferase hexapeptide (six repeats) TREPR_0060 PF13180 PDZ domain TREPR_0060 PF03572 Peptidase family S41 TREPR_0061 PF04452 RNA methyltransferase TREPR_0066 PF04012 PspA/IM30 family TREPR_0072 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TREPR_0078 PF00072 Response regulator receiver domain TREPR_0078 PF09308 LuxQ, periplasmic TREPR_0078 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0081 PF00356 Bacterial regulatory proteins, lacI family TREPR_0085 PF00005 ABC transporter TREPR_0085 PF08402 TOBE domain TREPR_0087 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0088 PF03009 Glycerophosphoryl diester phosphodiesterase family TREPR_0106 PF01066 CDP-alcohol phosphatidyltransferase TREPR_0108 PF17912 MalK OB fold domain TREPR_0108 PF00005 ABC transporter TREPR_0108 PF03459 TOBE domain TREPR_0109 PF02463 RecF/RecN/SMC N terminal domain TREPR_0109 PF06470 SMC proteins Flexible Hinge Domain TREPR_0119 PF01554 MatE TREPR_0120 PF02310 B12 binding domain TREPR_0120 PF02574 Homocysteine S-methyltransferase TREPR_0120 PF00809 Pterin binding enzyme TREPR_0120 PF02965 Vitamin B12 dependent methionine synthase, activation domain TREPR_0120 PF02607 B12 binding domain TREPR_0121 PF03781 Sulfatase-modifying factor enzyme 1 TREPR_0125 PF00436 Single-strand binding protein family TREPR_0129 PF01545 Cation efflux family TREPR_0129 PF16916 Dimerisation domain of Zinc Transporter TREPR_0130 PF17820 PDZ domain TREPR_0130 PF13180 PDZ domain TREPR_0131 PF08220 DeoR-like helix-turn-helix domain TREPR_0131 PF00455 DeoR C terminal sensor domain TREPR_0132 PF00455 DeoR C terminal sensor domain TREPR_0132 PF08220 DeoR-like helix-turn-helix domain TREPR_0134 PF00107 Zinc-binding dehydrogenase TREPR_0134 PF08240 Alcohol dehydrogenase GroES-like domain TREPR_0136 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREPR_0136 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREPR_0136 PF03129 Anticodon binding domain TREPR_0143 PF02441 Flavoprotein TREPR_0144 PF03576 Peptidase family S58 TREPR_0145 PF01612 3'-5' exonuclease TREPR_0145 PF00570 HRDC domain TREPR_0148 PF00171 Aldehyde dehydrogenase family TREPR_0149 PF00696 Amino acid kinase family TREPR_0150 PF04102 SlyX TREPR_0155 PF14748 Pyrroline-5-carboxylate reductase dimerisation TREPR_0155 PF03807 NADP oxidoreductase coenzyme F420-dependent TREPR_0157 PF13193 AMP-binding enzyme C-terminal domain TREPR_0157 PF00501 AMP-binding enzyme TREPR_0161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0161 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0162 PF02954 Bacterial regulatory protein, Fis family TREPR_0162 PF00072 Response regulator receiver domain TREPR_0162 PF00158 Sigma-54 interaction domain TREPR_0163 PF04545 Sigma-70, region 4 TREPR_0163 PF04539 Sigma-70 region 3 TREPR_0163 PF04542 Sigma-70 region 2 TREPR_0163 PF00140 Sigma-70 factor, region 1.2 TREPR_0163 PF03979 Sigma-70 factor, region 1.1 TREPR_0165 PF00814 Glycoprotease family TREPR_0166 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system TREPR_0170 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0171 PF00005 ABC transporter TREPR_0173 PF01546 Peptidase family M20/M25/M40 TREPR_0173 PF07687 Peptidase dimerisation domain TREPR_0175 PF00501 AMP-binding enzyme TREPR_0176 PF03330 Lytic transglycolase TREPR_0178 PF07726 ATPase family associated with various cellular activities (AAA) TREPR_0178 PF17863 AAA lid domain TREPR_0183 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0183 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0183 PF09308 LuxQ, periplasmic TREPR_0183 PF00072 Response regulator receiver domain TREPR_0184 PF13185 GAF domain TREPR_0184 PF00990 Diguanylate cyclase, GGDEF domain TREPR_0194 PF00535 Glycosyl transferase family 2 TREPR_0195 PF00534 Glycosyl transferases group 1 TREPR_0195 PF13439 Glycosyltransferase Family 4 TREPR_0203 PF00535 Glycosyl transferase family 2 TREPR_0210 PF16363 GDP-mannose 4,6 dehydratase TREPR_0212 PF01850 PIN domain TREPR_0213 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TREPR_0218 PF00958 GMP synthase C terminal domain TREPR_0218 PF02540 NAD synthase TREPR_0218 PF00117 Glutamine amidotransferase class-I TREPR_0219 PF00709 Adenylosuccinate synthetase TREPR_0221 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0222 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0223 PF02446 4-alpha-glucanotransferase TREPR_0226 PF00571 CBS domain TREPR_0226 PF00478 IMP dehydrogenase / GMP reductase domain TREPR_0227 PF10397 Adenylosuccinate lyase C-terminus TREPR_0227 PF00206 Lyase TREPR_0229 PF01053 Cys/Met metabolism PLP-dependent enzyme TREPR_0230 PF02683 Cytochrome C biogenesis protein transmembrane region TREPR_0231 PF00578 AhpC/TSA family TREPR_0233 PF02608 ABC transporter substrate-binding protein PnrA-like TREPR_0234 PF00005 ABC transporter TREPR_0239 PF07556 Protein of unknown function (DUF1538) TREPR_0240 PF02446 4-alpha-glucanotransferase TREPR_0245 PF00899 ThiF family TREPR_0246 PF00148 Nitrogenase component 1 type Oxidoreductase TREPR_0247 PF00148 Nitrogenase component 1 type Oxidoreductase TREPR_0248 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREPR_0249 PF00009 Elongation factor Tu GTP binding domain TREPR_0250 PF01507 Phosphoadenosine phosphosulfate reductase family TREPR_0251 PF01507 Phosphoadenosine phosphosulfate reductase family TREPR_0252 PF17850 CysA C-terminal regulatory domain TREPR_0252 PF12857 TOBE-like domain TREPR_0252 PF00005 ABC transporter TREPR_0253 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0254 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0256 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_0259 PF10414 Sirohaem synthase dimerisation region TREPR_0259 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TREPR_0259 PF14824 Sirohaem biosynthesis protein central TREPR_0262 PF00490 Delta-aminolevulinic acid dehydratase TREPR_0264 PF14821 Threonine synthase N terminus TREPR_0264 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_0265 PF00356 Bacterial regulatory proteins, lacI family TREPR_0266 PF13407 Periplasmic binding protein domain TREPR_0267 PF02653 Branched-chain amino acid transport system / permease component TREPR_0268 PF00005 ABC transporter TREPR_0270 PF04452 RNA methyltransferase TREPR_0274 PF02463 RecF/RecN/SMC N terminal domain TREPR_0275 PF00712 DNA polymerase III beta subunit, N-terminal domain TREPR_0275 PF02767 DNA polymerase III beta subunit, central domain TREPR_0275 PF02768 DNA polymerase III beta subunit, C-terminal domain TREPR_0277 PF00308 Bacterial dnaA protein TREPR_0277 PF11638 DnaA N-terminal domain TREPR_0277 PF08299 Bacterial dnaA protein helix-turn-helix TREPR_0279 PF00204 DNA gyrase B TREPR_0279 PF00986 DNA gyrase B subunit, carboxyl terminus TREPR_0279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0279 PF01751 Toprim domain TREPR_0280 PF00072 Response regulator receiver domain TREPR_0280 PF09308 LuxQ, periplasmic TREPR_0280 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0281 PF03707 Bacterial signalling protein N terminal repeat TREPR_0281 PF00990 Diguanylate cyclase, GGDEF domain TREPR_0281 PF00563 EAL domain TREPR_0282 PF00521 DNA gyrase/topoisomerase IV, subunit A TREPR_0282 PF03989 DNA gyrase C-terminal domain, beta-propeller TREPR_0284 PF00005 ABC transporter TREPR_0284 PF08402 TOBE domain TREPR_0288 PF04073 Aminoacyl-tRNA editing domain TREPR_0289 PF03328 HpcH/HpaI aldolase/citrate lyase family TREPR_0291 PF08032 RNA 2'-O ribose methyltransferase substrate binding TREPR_0291 PF00588 SpoU rRNA Methylase family TREPR_0293 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TREPR_0296 PF00669 Bacterial flagellin N-terminal helical region TREPR_0296 PF00700 Bacterial flagellin C-terminal helical region TREPR_0298 PF00211 Adenylate and Guanylate cyclase catalytic domain TREPR_0298 PF00072 Response regulator receiver domain TREPR_0301 PF00588 SpoU rRNA Methylase family TREPR_0301 PF08032 RNA 2'-O ribose methyltransferase substrate binding TREPR_0302 PF00248 Aldo/keto reductase family TREPR_0303 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TREPR_0303 PF10996 Beta-Casp domain TREPR_0303 PF00753 Metallo-beta-lactamase superfamily TREPR_0305 PF04060 Putative Fe-S cluster TREPR_0306 PF02508 Rnf-Nqr subunit, membrane protein TREPR_0307 PF02508 Rnf-Nqr subunit, membrane protein TREPR_0308 PF04205 FMN-binding domain TREPR_0309 PF03116 NQR2, RnfD, RnfE family TREPR_0310 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREPR_0310 PF13237 4Fe-4S dicluster domain TREPR_0310 PF13375 RnfC Barrel sandwich hybrid domain TREPR_0310 PF10531 SLBB domain TREPR_0311 PF00226 DnaJ domain TREPR_0311 PF01556 DnaJ C terminal domain TREPR_0311 PF00684 DnaJ central domain TREPR_0312 PF00012 Hsp70 protein TREPR_0313 PF01025 GrpE TREPR_0314 PF02673 Bacitracin resistance protein BacA TREPR_0318 PF13635 Domain of unknown function (DUF4143) TREPR_0318 PF13173 AAA domain TREPR_0323 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TREPR_0324 PF01850 PIN domain TREPR_0327 PF05523 WxcM-like, C-terminal TREPR_0328 PF05523 WxcM-like, C-terminal TREPR_0333 PF01370 NAD dependent epimerase/dehydratase family TREPR_0334 PF00456 Transketolase, thiamine diphosphate binding domain TREPR_0335 PF02780 Transketolase, C-terminal domain TREPR_0335 PF02779 Transketolase, pyrimidine binding domain TREPR_0335 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TREPR_0336 PF13419 Haloacid dehalogenase-like hydrolase TREPR_0337 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREPR_0340 PF13537 Glutamine amidotransferase domain TREPR_0340 PF00733 Asparagine synthase TREPR_0342 PF13439 Glycosyltransferase Family 4 TREPR_0342 PF00534 Glycosyl transferases group 1 TREPR_0344 PF01370 NAD dependent epimerase/dehydratase family TREPR_0345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TREPR_0345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TREPR_0345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TREPR_0348 PF04015 Domain of unknown function (DUF362) TREPR_0353 PF02397 Bacterial sugar transferase TREPR_0354 PF02719 Polysaccharide biosynthesis protein TREPR_0357 PF03062 MBOAT, membrane-bound O-acyltransferase family TREPR_0367 PF01820 D-ala D-ala ligase N-terminus TREPR_0367 PF07478 D-ala D-ala ligase C-terminus TREPR_0368 PF02875 Mur ligase family, glutamate ligase domain TREPR_0368 PF01225 Mur ligase family, catalytic domain TREPR_0368 PF08245 Mur ligase middle domain TREPR_0369 PF12697 Alpha/beta hydrolase family TREPR_0370 PF00881 Nitroreductase family TREPR_0371 PF00675 Insulinase (Peptidase family M16) TREPR_0371 PF05193 Peptidase M16 inactive domain TREPR_0372 PF13673 Acetyltransferase (GNAT) domain TREPR_0372 PF13302 Acetyltransferase (GNAT) domain TREPR_0372 PF00958 GMP synthase C terminal domain TREPR_0372 PF03352 Methyladenine glycosylase TREPR_0372 PF00117 Glutamine amidotransferase class-I TREPR_0380 PF02683 Cytochrome C biogenesis protein transmembrane region TREPR_0380 PF11412 Disulphide bond corrector protein DsbC TREPR_0380 PF00085 Thioredoxin TREPR_0383 PF00117 Glutamine amidotransferase class-I TREPR_0383 PF00591 Glycosyl transferase family, a/b domain TREPR_0383 PF02885 Glycosyl transferase family, helical bundle domain TREPR_0384 PF00591 Glycosyl transferase family, a/b domain TREPR_0384 PF02885 Glycosyl transferase family, helical bundle domain TREPR_0387 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_0388 PF00290 Tryptophan synthase alpha chain TREPR_0390 PF02256 Iron hydrogenase small subunit TREPR_0390 PF12838 4Fe-4S dicluster domain TREPR_0390 PF02906 Iron only hydrogenase large subunit, C-terminal domain TREPR_0391 PF09861 Lactate racemase N-terminal domain TREPR_0393 PF03949 Malic enzyme, NAD binding domain TREPR_0393 PF00390 Malic enzyme, N-terminal domain TREPR_0395 PF00162 Phosphoglycerate kinase TREPR_0396 PF01261 Xylose isomerase-like TIM barrel TREPR_0397 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREPR_0397 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREPR_0397 PF00205 Thiamine pyrophosphate enzyme, central domain TREPR_0399 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREPR_0399 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREPR_0401 PF00356 Bacterial regulatory proteins, lacI family TREPR_0402 PF00005 ABC transporter TREPR_0403 PF02653 Branched-chain amino acid transport system / permease component TREPR_0404 PF13407 Periplasmic binding protein domain TREPR_0405 PF00356 Bacterial regulatory proteins, lacI family TREPR_0406 PF02780 Transketolase, C-terminal domain TREPR_0406 PF02779 Transketolase, pyrimidine binding domain TREPR_0406 PF00456 Transketolase, thiamine diphosphate binding domain TREPR_0407 PF02779 Transketolase, pyrimidine binding domain TREPR_0407 PF02780 Transketolase, C-terminal domain TREPR_0407 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TREPR_0408 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREPR_0408 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREPR_0409 PF02810 SEC-C motif TREPR_0410 PF00271 Helicase conserved C-terminal domain TREPR_0410 PF00176 SNF2 family N-terminal domain TREPR_0417 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREPR_0417 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TREPR_0418 PF03781 Sulfatase-modifying factor enzyme 1 TREPR_0421 PF14821 Threonine synthase N terminus TREPR_0421 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_0422 PF00465 Iron-containing alcohol dehydrogenase TREPR_0423 PF00202 Aminotransferase class-III TREPR_0424 PF01546 Peptidase family M20/M25/M40 TREPR_0425 PF01180 Dihydroorotate dehydrogenase TREPR_0426 PF01979 Amidohydrolase family TREPR_0427 PF09084 NMT1/THI5 like TREPR_0428 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0429 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0430 PF00005 ABC transporter TREPR_0433 PF02653 Branched-chain amino acid transport system / permease component TREPR_0435 PF12399 Branched-chain amino acid ATP-binding cassette transporter TREPR_0435 PF00005 ABC transporter TREPR_0436 PF00005 ABC transporter TREPR_0440 PF12399 Branched-chain amino acid ATP-binding cassette transporter TREPR_0440 PF00005 ABC transporter TREPR_0441 PF00005 ABC transporter TREPR_0442 PF02653 Branched-chain amino acid transport system / permease component TREPR_0446 PF00135 Carboxylesterase family TREPR_0447 PF12169 DNA polymerase III subunits gamma and tau domain III TREPR_0448 PF02575 YbaB/EbfC DNA-binding family TREPR_0449 PF13662 Toprim domain TREPR_0449 PF02132 RecR protein TREPR_0450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TREPR_0451 PF00196 Bacterial regulatory proteins, luxR family TREPR_0451 PF00072 Response regulator receiver domain TREPR_0452 PF01026 TatD related DNase TREPR_0453 PF01207 Dihydrouridine synthase (Dus) TREPR_0454 PF00990 Diguanylate cyclase, GGDEF domain TREPR_0456 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_0460 PF01409 tRNA synthetases class II core domain (F) TREPR_0461 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_0463 PF05524 PEP-utilising enzyme, N-terminal TREPR_0463 PF00391 PEP-utilising enzyme, mobile domain TREPR_0463 PF02896 PEP-utilising enzyme, TIM barrel domain TREPR_0464 PF00381 PTS HPr component phosphorylation site TREPR_0465 PF00874 PRD domain TREPR_0465 PF00158 Sigma-54 interaction domain TREPR_0465 PF03610 PTS system fructose IIA component TREPR_0466 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit TREPR_0467 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TREPR_0468 PF02378 Phosphotransferase system, EIIC TREPR_0469 PF13350 Tyrosine phosphatase family TREPR_0470 PF00232 Glycosyl hydrolase family 1 TREPR_0471 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TREPR_0472 PF01568 Molydopterin dinucleotide binding domain TREPR_0472 PF00384 Molybdopterin oxidoreductase TREPR_0472 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TREPR_0473 PF01321 Creatinase/Prolidase N-terminal domain TREPR_0473 PF00557 Metallopeptidase family M24 TREPR_0476 PF00005 ABC transporter TREPR_0476 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0477 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0477 PF00005 ABC transporter TREPR_0478 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0478 PF12911 N-terminal TM domain of oligopeptide transport permease C TREPR_0479 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_0483 PF03484 tRNA synthetase B5 domain TREPR_0483 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TREPR_0489 PF02378 Phosphotransferase system, EIIC TREPR_0489 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREPR_0489 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TREPR_0490 PF01544 CorA-like Mg2+ transporter protein TREPR_0491 PF03481 Putative GTP-binding controlling metal-binding TREPR_0491 PF01300 Telomere recombination TREPR_0492 PF01594 AI-2E family transporter TREPR_0493 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_0493 PF02743 Cache domain TREPR_0493 PF00672 HAMP domain TREPR_0494 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_0494 PF00672 HAMP domain TREPR_0495 PF00672 HAMP domain TREPR_0495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_0497 PF00440 Bacterial regulatory proteins, tetR family TREPR_0498 PF01170 Putative RNA methylase family UPF0020 TREPR_0498 PF02926 THUMP domain TREPR_0499 PF01728 FtsJ-like methyltransferase TREPR_0499 PF18125 RlmM ferredoxin-like domain TREPR_0502 PF01424 R3H domain TREPR_0502 PF14804 Jag N-terminus TREPR_0503 PF14849 YidC periplasmic domain TREPR_0503 PF02096 60Kd inner membrane protein TREPR_0505 PF00825 Ribonuclease P TREPR_0506 PF00468 Ribosomal protein L34 TREPR_0510 PF13597 Anaerobic ribonucleoside-triphosphate reductase TREPR_0510 PF03477 ATP cone domain TREPR_0512 PF02677 Epoxyqueuosine reductase QueH TREPR_0513 PF02146 Sir2 family TREPR_0516 PF06180 Cobalt chelatase (CbiK) TREPR_0518 PF07715 TonB-dependent Receptor Plug Domain TREPR_0518 PF00593 TonB dependent receptor TREPR_0521 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TREPR_0522 PF11760 Cobalamin synthesis G N-terminal TREPR_0522 PF01890 Cobalamin synthesis G C-terminus TREPR_0522 PF11761 Cobalamin biosynthesis central region TREPR_0523 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TREPR_0525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TREPR_0526 PF07685 CobB/CobQ-like glutamine amidotransferase domain TREPR_0526 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TREPR_0527 PF03186 CobD/Cbib protein TREPR_0528 PF00155 Aminotransferase class I and II TREPR_0530 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TREPR_0531 PF02570 Precorrin-8X methylmutase TREPR_0532 PF01032 FecCD transport family TREPR_0533 PF00005 ABC transporter TREPR_0534 PF07685 CobB/CobQ-like glutamine amidotransferase domain TREPR_0537 PF00593 TonB dependent receptor TREPR_0537 PF07715 TonB-dependent Receptor Plug Domain TREPR_0539 PF01032 FecCD transport family TREPR_0540 PF00005 ABC transporter TREPR_0541 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREPR_0543 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TREPR_0545 PF02277 Phosphoribosyltransferase TREPR_0546 PF02654 Cobalamin-5-phosphate synthase TREPR_0547 PF00873 AcrB/AcrD/AcrF family TREPR_0553 PF00749 tRNA synthetases class I (E and Q), catalytic domain TREPR_0553 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain TREPR_0556 PF12848 ABC transporter TREPR_0556 PF16326 ABC transporter C-terminal domain TREPR_0556 PF00005 ABC transporter TREPR_0560 PF16363 GDP-mannose 4,6 dehydratase TREPR_0561 PF07687 Peptidase dimerisation domain TREPR_0561 PF01546 Peptidase family M20/M25/M40 TREPR_0562 PF12464 Maltose acetyltransferase TREPR_0562 PF00132 Bacterial transferase hexapeptide (six repeats) TREPR_0567 PF00005 ABC transporter TREPR_0567 PF08402 TOBE domain TREPR_0568 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0569 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0570 PF13416 Bacterial extracellular solute-binding protein TREPR_0571 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TREPR_0572 PF01171 PP-loop family TREPR_0573 PF00899 ThiF family TREPR_0581 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0581 PF00672 HAMP domain TREPR_0581 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0582 PF00486 Transcriptional regulatory protein, C terminal TREPR_0582 PF00072 Response regulator receiver domain TREPR_0583 PF00403 Heavy-metal-associated domain TREPR_0584 PF00403 Heavy-metal-associated domain TREPR_0587 PF00294 pfkB family carbohydrate kinase TREPR_0588 PF01081 KDPG and KHG aldolase TREPR_0589 PF02614 Glucuronate isomerase TREPR_0590 PF01232 Mannitol dehydrogenase Rossmann domain TREPR_0590 PF08125 Mannitol dehydrogenase C-terminal domain TREPR_0591 PF03786 D-mannonate dehydratase (UxuA) TREPR_0592 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREPR_0595 PF00392 Bacterial regulatory proteins, gntR family TREPR_0595 PF07729 FCD domain TREPR_0596 PF00118 TCP-1/cpn60 chaperonin family TREPR_0597 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREPR_0597 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREPR_0598 PF00075 RNase H TREPR_0599 PF02229 Transcriptional Coactivator p15 (PC4) TREPR_0605 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TREPR_0606 PF01850 PIN domain TREPR_0607 PF00588 SpoU rRNA Methylase family TREPR_0607 PF08032 RNA 2'-O ribose methyltransferase substrate binding TREPR_0608 PF00365 Phosphofructokinase TREPR_0610 PF04324 BFD-like [2Fe-2S] binding domain TREPR_0610 PF01592 NifU-like N terminal domain TREPR_0610 PF01106 NifU-like domain TREPR_0611 PF08497 Radical SAM N-terminal TREPR_0611 PF04055 Radical SAM superfamily TREPR_0611 PF11842 Domain of unknown function (DUF3362) TREPR_0612 PF00334 Nucleoside diphosphate kinase TREPR_0614 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TREPR_0614 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TREPR_0615 PF02881 SRP54-type protein, helical bundle domain TREPR_0615 PF02978 Signal peptide binding domain TREPR_0615 PF00448 SRP54-type protein, GTPase domain TREPR_0616 PF01627 Hpt domain TREPR_0616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0616 PF00072 Response regulator receiver domain TREPR_0616 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0625 PF00293 NUDIX domain TREPR_0627 PF07670 Nucleoside recognition TREPR_0627 PF17910 FeoB cytosolic helical domain TREPR_0627 PF07664 Ferrous iron transport protein B C terminus TREPR_0627 PF04023 FeoA domain TREPR_0627 PF02421 Ferrous iron transport protein B TREPR_0629 PF01053 Cys/Met metabolism PLP-dependent enzyme TREPR_0630 PF01053 Cys/Met metabolism PLP-dependent enzyme TREPR_0631 PF02082 Transcriptional regulator TREPR_0632 PF02082 Transcriptional regulator TREPR_0633 PF03033 Glycosyltransferase family 28 N-terminal domain TREPR_0634 PF00155 Aminotransferase class I and II TREPR_0635 PF03033 Glycosyltransferase family 28 N-terminal domain TREPR_0636 PF06463 Molybdenum Cofactor Synthesis C TREPR_0636 PF04055 Radical SAM superfamily TREPR_0638 PF07724 AAA domain (Cdc48 subfamily) TREPR_0638 PF00004 ATPase family associated with various cellular activities (AAA) TREPR_0638 PF02861 Clp amino terminal domain, pathogenicity island component TREPR_0638 PF10431 C-terminal, D2-small domain, of ClpB protein TREPR_0638 PF17871 AAA lid domain TREPR_0639 PF01926 50S ribosome-binding GTPase TREPR_0639 PF13167 GTP-binding GTPase N-terminal TREPR_0639 PF16360 GTP-binding GTPase Middle Region TREPR_0640 PF01264 Chorismate synthase TREPR_0648 PF17757 UvrB interaction domain TREPR_0648 PF02151 UvrB/uvrC motif TREPR_0648 PF12344 Ultra-violet resistance protein B TREPR_0648 PF00271 Helicase conserved C-terminal domain TREPR_0648 PF04851 Type III restriction enzyme, res subunit TREPR_0649 PF00391 PEP-utilising enzyme, mobile domain TREPR_0649 PF00224 Pyruvate kinase, barrel domain TREPR_0649 PF02887 Pyruvate kinase, alpha/beta domain TREPR_0650 PF00691 OmpA family TREPR_0650 PF01389 OmpA-like transmembrane domain TREPR_0652 PF06616 BsuBI/PstI restriction endonuclease domain TREPR_0652 PF17728 BsuBI/PstI restriction endonuclease HTH domain TREPR_0653 PF07669 Eco57I restriction-modification methylase TREPR_0653 PF07669 Eco57I restriction-modification methylase TREPR_0655 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREPR_0655 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREPR_0658 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0659 PF08402 TOBE domain TREPR_0659 PF00005 ABC transporter TREPR_0660 PF00459 Inositol monophosphatase family TREPR_0663 PF04073 Aminoacyl-tRNA editing domain TREPR_0663 PF03129 Anticodon binding domain TREPR_0663 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREPR_0667 PF01204 Trehalase TREPR_0668 PF02541 Ppx/GppA phosphatase family TREPR_0669 PF13089 Polyphosphate kinase N-terminal domain TREPR_0669 PF17941 Polyphosphate kinase C-terminal domain 1 TREPR_0669 PF02503 Polyphosphate kinase middle domain TREPR_0669 PF13090 Polyphosphate kinase C-terminal domain 2 TREPR_0670 PF10672 S-adenosylmethionine-dependent methyltransferase TREPR_0670 PF17785 PUA-like domain TREPR_0671 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_0672 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0674 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0674 PF00005 ABC transporter TREPR_0675 PF00005 ABC transporter TREPR_0675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0681 PF00999 Sodium/hydrogen exchanger family TREPR_0683 PF00717 Peptidase S24-like TREPR_0683 PF01726 LexA DNA binding domain TREPR_0684 PF00158 Sigma-54 interaction domain TREPR_0684 PF00072 Response regulator receiver domain TREPR_0684 PF02954 Bacterial regulatory protein, Fis family TREPR_0685 PF00672 HAMP domain TREPR_0685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0685 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0685 PF00989 PAS fold TREPR_0686 PF00381 PTS HPr component phosphorylation site TREPR_0687 PF02603 HPr Serine kinase N terminus TREPR_0687 PF07475 HPr Serine kinase C-terminal domain TREPR_0688 PF01740 STAS domain TREPR_0692 PF01966 HD domain TREPR_0698 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0698 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0698 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREPR_0698 PF00072 Response regulator receiver domain TREPR_0698 PF00989 PAS fold TREPR_0698 PF01627 Hpt domain TREPR_0699 PF02203 Tar ligand binding domain homologue TREPR_0699 PF00672 HAMP domain TREPR_0699 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_0700 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREPR_0700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREPR_0705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0705 PF00005 ABC transporter TREPR_0706 PF00005 ABC transporter TREPR_0706 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0707 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_0711 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREPR_0711 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TREPR_0714 PF01464 Transglycosylase SLT domain TREPR_0714 PF01551 Peptidase family M23 TREPR_0714 PF10145 Phage-related minor tail protein TREPR_0716 PF00348 Polyprenyl synthetase TREPR_0717 PF01728 FtsJ-like methyltransferase TREPR_0720 PF00248 Aldo/keto reductase family TREPR_0721 PF01979 Amidohydrolase family TREPR_0723 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0724 PF00005 ABC transporter TREPR_0726 PF00664 ABC transporter transmembrane region TREPR_0726 PF00005 ABC transporter TREPR_0727 PF02653 Branched-chain amino acid transport system / permease component TREPR_0728 PF00005 ABC transporter TREPR_0729 PF13407 Periplasmic binding protein domain TREPR_0730 PF12320 Type 5 capsule protein repressor C-terminal domain TREPR_0730 PF00149 Calcineurin-like phosphoesterase TREPR_0731 PF13476 AAA domain TREPR_0733 PF01554 MatE TREPR_0734 PF00708 Acylphosphatase TREPR_0735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREPR_0735 PF03129 Anticodon binding domain TREPR_0744 PF02082 Transcriptional regulator TREPR_0747 PF04286 Protein of unknown function (DUF445) TREPR_0749 PF13361 UvrD-like helicase C-terminal domain TREPR_0749 PF00580 UvrD/REP helicase N-terminal domain TREPR_0755 PF02310 B12 binding domain TREPR_0755 PF02607 B12 binding domain TREPR_0758 PF12127 SigmaW regulon antibacterial TREPR_0764 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) TREPR_0765 PF08668 HDOD domain TREPR_0767 PF01784 NIF3 (NGG1p interacting factor 3) TREPR_0768 PF01252 Signal peptidase (SPase) II TREPR_0773 PF01381 Helix-turn-helix TREPR_0774 PF05973 Phage derived protein Gp49-like (DUF891) TREPR_0776 PF00113 Enolase, C-terminal TIM barrel domain TREPR_0776 PF03952 Enolase, N-terminal domain TREPR_0779 PF01029 NusB family TREPR_0781 PF01411 tRNA synthetases class II (A) TREPR_0781 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREPR_0791 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TREPR_0795 PF00005 ABC transporter TREPR_0796 PF02405 Permease MlaE TREPR_0797 PF05437 Branched-chain amino acid transport protein (AzlD) TREPR_0798 PF03591 AzlC protein TREPR_0799 PF01871 AMMECR1 TREPR_0800 PF01371 Trp repressor protein TREPR_0801 PF13419 Haloacid dehalogenase-like hydrolase TREPR_0802 PF01554 MatE TREPR_0808 PF08406 CbbQ/NirQ/NorQ C-terminal TREPR_0808 PF07728 AAA domain (dynein-related subfamily) TREPR_0812 PF17770 Ribonuclease J C-terminal domain TREPR_0812 PF12706 Beta-lactamase superfamily domain TREPR_0812 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TREPR_0817 PF00271 Helicase conserved C-terminal domain TREPR_0817 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TREPR_0817 PF04851 Type III restriction enzyme, res subunit TREPR_0817 PF08463 EcoEI R protein C-terminal TREPR_0819 PF00589 Phage integrase family TREPR_0819 PF02899 Phage integrase, N-terminal SAM-like domain TREPR_0820 PF01420 Type I restriction modification DNA specificity domain TREPR_0824 PF12161 HsdM N-terminal domain TREPR_0824 PF02384 N-6 DNA Methylase TREPR_0825 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0826 PF12911 N-terminal TM domain of oligopeptide transport permease C TREPR_0826 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0827 PF00005 ABC transporter TREPR_0827 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0828 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0828 PF00005 ABC transporter TREPR_0829 PF02127 Aminopeptidase I zinc metalloprotease (M18) TREPR_0830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_0832 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0833 PF09383 NIL domain TREPR_0833 PF00005 ABC transporter TREPR_0836 PF01053 Cys/Met metabolism PLP-dependent enzyme TREPR_0838 PF00128 Alpha amylase, catalytic domain TREPR_0838 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TREPR_0839 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) TREPR_0843 PF01638 HxlR-like helix-turn-helix TREPR_0848 PF01812 5-formyltetrahydrofolate cyclo-ligase family TREPR_0850 PF00830 Ribosomal L28 family TREPR_0851 PF09587 Bacterial capsule synthesis protein PGA_cap TREPR_0853 PF02535 ZIP Zinc transporter TREPR_0854 PF05191 Adenylate kinase, active site lid TREPR_0855 PF00672 HAMP domain TREPR_0855 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0855 PF00072 Response regulator receiver domain TREPR_0855 PF01627 Hpt domain TREPR_0855 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_0855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0859 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREPR_0864 PF01797 Transposase IS200 like TREPR_0887 PF00436 Single-strand binding protein family TREPR_0898 PF04002 RadC-like JAB domain TREPR_0900 PF00005 ABC transporter TREPR_0901 PF01726 LexA DNA binding domain TREPR_0901 PF00717 Peptidase S24-like TREPR_0904 PF01336 OB-fold nucleic acid binding domain TREPR_0904 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREPR_0904 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREPR_0904 PF14579 Helix-hairpin-helix motif TREPR_0904 PF02811 PHP domain TREPR_0912 PF17762 HTH domain found in ParB protein TREPR_0912 PF02195 ParB-like nuclease domain TREPR_0913 PF13614 AAA domain TREPR_0917 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0917 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0917 PF09308 LuxQ, periplasmic TREPR_0917 PF00072 Response regulator receiver domain TREPR_0918 PF01048 Phosphorylase superfamily TREPR_0921 PF00471 Ribosomal protein L33 TREPR_0924 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TREPR_0925 PF02357 Transcription termination factor nusG TREPR_0925 PF00467 KOW motif TREPR_0926 PF00298 Ribosomal protein L11, RNA binding domain TREPR_0926 PF03946 Ribosomal protein L11, N-terminal domain TREPR_0927 PF00687 Ribosomal protein L1p/L10e family TREPR_0928 PF00466 Ribosomal protein L10 TREPR_0929 PF00542 Ribosomal protein L7/L12 C-terminal domain TREPR_0929 PF16320 Ribosomal protein L7/L12 dimerisation domain TREPR_0930 PF04565 RNA polymerase Rpb2, domain 3 TREPR_0930 PF10385 RNA polymerase beta subunit external 1 domain TREPR_0930 PF04563 RNA polymerase beta subunit TREPR_0930 PF04560 RNA polymerase Rpb2, domain 7 TREPR_0930 PF00562 RNA polymerase Rpb2, domain 6 TREPR_0930 PF04561 RNA polymerase Rpb2, domain 2 TREPR_0931 PF04997 RNA polymerase Rpb1, domain 1 TREPR_0931 PF00623 RNA polymerase Rpb1, domain 2 TREPR_0931 PF04983 RNA polymerase Rpb1, domain 3 TREPR_0931 PF05000 RNA polymerase Rpb1, domain 4 TREPR_0931 PF04998 RNA polymerase Rpb1, domain 5 TREPR_0932 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0932 PF00005 ABC transporter TREPR_0933 PF00005 ABC transporter TREPR_0933 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_0934 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0936 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_0937 PF01470 Pyroglutamyl peptidase TREPR_0938 PF01958 Domain of unknown function DUF108 TREPR_0938 PF03447 Homoserine dehydrogenase, NAD binding domain TREPR_0939 PF01321 Creatinase/Prolidase N-terminal domain TREPR_0939 PF00557 Metallopeptidase family M24 TREPR_0948 PF07669 Eco57I restriction-modification methylase TREPR_0953 PF00005 ABC transporter TREPR_0954 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0955 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREPR_0957 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TREPR_0957 PF00384 Molybdopterin oxidoreductase TREPR_0957 PF01568 Molydopterin dinucleotide binding domain TREPR_0959 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREPR_0962 PF00005 ABC transporter TREPR_0963 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREPR_0964 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0965 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_0966 PF18152 DAHP synthase ferredoxin-like domain TREPR_0966 PF00793 DAHP synthetase I family TREPR_0969 PF17149 Periplasmic sensor domain found in signal transduction proteins TREPR_0969 PF01627 Hpt domain TREPR_0969 PF00672 HAMP domain TREPR_0969 PF00072 Response regulator receiver domain TREPR_0969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_0969 PF00512 His Kinase A (phospho-acceptor) domain TREPR_0970 PF02554 Carbon starvation protein CstA TREPR_0970 PF13722 5TM C-terminal transporter carbon starvation CstA TREPR_0971 PF07009 NusG domain II TREPR_0974 PF02424 ApbE family TREPR_0976 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREPR_0976 PF00205 Thiamine pyrophosphate enzyme, central domain TREPR_0976 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREPR_0979 PF00180 Isocitrate/isopropylmalate dehydrogenase TREPR_0980 PF08502 LeuA allosteric (dimerisation) domain TREPR_0980 PF00682 HMGL-like TREPR_0982 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TREPR_0982 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TREPR_0983 PF10369 Small subunit of acetolactate synthase TREPR_0986 PF00990 Diguanylate cyclase, GGDEF domain TREPR_0986 PF13185 GAF domain TREPR_0987 PF00501 AMP-binding enzyme TREPR_0988 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TREPR_0989 PF17848 Acetyl-coA carboxylase zinc finger domain TREPR_0989 PF01039 Carboxyl transferase domain TREPR_0998 PF01165 Ribosomal protein S21 TREPR_1001 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TREPR_1001 PF02272 DHHA1 domain TREPR_1001 PF01368 DHH family TREPR_1001 PF17768 RecJ OB domain TREPR_1002 PF00591 Glycosyl transferase family, a/b domain TREPR_1002 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TREPR_1002 PF02885 Glycosyl transferase family, helical bundle domain TREPR_1005 PF17853 GGDEF-like domain TREPR_1005 PF13556 PucR C-terminal helix-turn-helix domain TREPR_1011 PF00872 Transposase, Mutator family TREPR_1015 PF14841 FliG middle domain TREPR_1015 PF14842 FliG N-terminal domain TREPR_1015 PF01706 FliG C-terminal domain TREPR_1016 PF08367 Peptidase M16C associated TREPR_1016 PF05193 Peptidase M16 inactive domain TREPR_1016 PF00675 Insulinase (Peptidase family M16) TREPR_1019 PF12419 SNF2 Helicase protein TREPR_1019 PF00271 Helicase conserved C-terminal domain TREPR_1019 PF00176 SNF2 family N-terminal domain TREPR_1021 PF01554 MatE TREPR_1023 PF02559 CarD-like/TRCF domain TREPR_1025 PF02542 YgbB family TREPR_1026 PF00730 HhH-GPD superfamily base excision DNA repair protein TREPR_1026 PF10576 Iron-sulfur binding domain of endonuclease III TREPR_1026 PF00633 Helix-hairpin-helix motif TREPR_1030 PF03462 PCRF domain TREPR_1030 PF00472 RF-1 domain TREPR_1033 PF00438 S-adenosylmethionine synthetase, N-terminal domain TREPR_1033 PF02773 S-adenosylmethionine synthetase, C-terminal domain TREPR_1033 PF02772 S-adenosylmethionine synthetase, central domain TREPR_1046 PF08331 Domain of unknown function (DUF1730) TREPR_1047 PF00440 Bacterial regulatory proteins, tetR family TREPR_1050 PF08534 Redoxin TREPR_1052 PF13407 Periplasmic binding protein domain TREPR_1054 PF00672 HAMP domain TREPR_1054 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1054 PF01627 Hpt domain TREPR_1054 PF00072 Response regulator receiver domain TREPR_1054 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1055 PF00849 RNA pseudouridylate synthase TREPR_1058 PF17746 SfsA N-terminal OB domain TREPR_1058 PF03749 Sugar fermentation stimulation protein RE domain TREPR_1061 PF01184 GPR1/FUN34/yaaH family TREPR_1062 PF13335 Magnesium chelatase, subunit ChlI C-terminal TREPR_1062 PF01078 Magnesium chelatase, subunit ChlI TREPR_1063 PF02875 Mur ligase family, glutamate ligase domain TREPR_1063 PF01225 Mur ligase family, catalytic domain TREPR_1063 PF08245 Mur ligase middle domain TREPR_1066 PF08245 Mur ligase middle domain TREPR_1066 PF02875 Mur ligase family, glutamate ligase domain TREPR_1067 PF00152 tRNA synthetases class II (D, K and N) TREPR_1069 PF06071 Protein of unknown function (DUF933) TREPR_1069 PF01926 50S ribosome-binding GTPase TREPR_1070 PF00586 AIR synthase related protein, N-terminal domain TREPR_1070 PF02769 AIR synthase related protein, C-terminal domain TREPR_1070 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TREPR_1075 PF02403 Seryl-tRNA synthetase N-terminal domain TREPR_1075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREPR_1076 PF01230 HIT domain TREPR_1078 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TREPR_1079 PF13932 GidA associated domain TREPR_1079 PF01134 Glucose inhibited division protein A TREPR_1080 PF10396 GTP-binding protein TrmE N-terminus TREPR_1080 PF01926 50S ribosome-binding GTPase TREPR_1080 PF12631 MnmE helical domain TREPR_1081 PF01569 PAP2 superfamily TREPR_1085 PF01116 Fructose-bisphosphate aldolase class-II TREPR_1093 PF01966 HD domain TREPR_1093 PF18211 Csm1 subunit domain B TREPR_1095 PF03787 RAMP superfamily TREPR_1101 PF02151 UvrB/uvrC motif TREPR_1101 PF01541 GIY-YIG catalytic domain TREPR_1101 PF08459 UvrC Helix-hairpin-helix N-terminal TREPR_1104 PF08668 HDOD domain TREPR_1105 PF00753 Metallo-beta-lactamase superfamily TREPR_1105 PF12706 Beta-lactamase superfamily domain TREPR_1107 PF00557 Metallopeptidase family M24 TREPR_1107 PF01321 Creatinase/Prolidase N-terminal domain TREPR_1108 PF01212 Beta-eliminating lyase TREPR_1116 PF01380 SIS domain TREPR_1117 PF07883 Cupin domain TREPR_1118 PF00924 Mechanosensitive ion channel TREPR_1122 PF13458 Periplasmic binding protein TREPR_1123 PF02653 Branched-chain amino acid transport system / permease component TREPR_1124 PF02653 Branched-chain amino acid transport system / permease component TREPR_1124 PF11862 Domain of unknown function (DUF3382) TREPR_1125 PF00005 ABC transporter TREPR_1125 PF12399 Branched-chain amino acid ATP-binding cassette transporter TREPR_1126 PF00005 ABC transporter TREPR_1127 PF00571 CBS domain TREPR_1128 PF00005 ABC transporter TREPR_1133 PF00593 TonB dependent receptor TREPR_1133 PF07715 TonB-dependent Receptor Plug Domain TREPR_1140 PF02492 CobW/HypB/UreG, nucleotide-binding domain TREPR_1141 PF00005 ABC transporter TREPR_1143 PF12728 Helix-turn-helix domain TREPR_1143 PF12727 PBP superfamily domain TREPR_1145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREPR_1148 PF01496 V-type ATPase 116kDa subunit family TREPR_1152 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREPR_1152 PF16886 ATPsynthase alpha/beta subunit N-term extension TREPR_1152 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREPR_1153 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREPR_1153 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREPR_1165 PF02561 Flagellar protein FliS TREPR_1166 PF04474 Protein of unknown function (DUF554) TREPR_1169 PF01479 S4 domain TREPR_1169 PF00849 RNA pseudouridylate synthase TREPR_1170 PF00933 Glycosyl hydrolase family 3 N terminal domain TREPR_1172 PF01875 Memo-like protein TREPR_1173 PF00501 AMP-binding enzyme TREPR_1175 PF00011 Hsp20/alpha crystallin family TREPR_1176 PF00871 Acetokinase family TREPR_1177 PF01050 Mannose-6-phosphate isomerase TREPR_1177 PF00483 Nucleotidyl transferase TREPR_1178 PF01327 Polypeptide deformylase TREPR_1179 PF00551 Formyl transferase TREPR_1179 PF02911 Formyl transferase, C-terminal domain TREPR_1180 PF03793 PASTA domain TREPR_1182 PF00570 HRDC domain TREPR_1182 PF00270 DEAD/DEAH box helicase TREPR_1182 PF00271 Helicase conserved C-terminal domain TREPR_1182 PF16124 RecQ zinc-binding TREPR_1182 PF09382 RQC domain TREPR_1183 PF01850 PIN domain TREPR_1185 PF00155 Aminotransferase class I and II TREPR_1186 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TREPR_1186 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TREPR_1192 PF13361 UvrD-like helicase C-terminal domain TREPR_1192 PF00580 UvrD/REP helicase N-terminal domain TREPR_1193 PF00919 Uncharacterized protein family UPF0004 TREPR_1193 PF18693 TRAM domain TREPR_1193 PF04055 Radical SAM superfamily TREPR_1197 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system TREPR_1199 PF13180 PDZ domain TREPR_1201 PF00004 ATPase family associated with various cellular activities (AAA) TREPR_1201 PF01434 Peptidase family M41 TREPR_1201 PF17862 AAA+ lid domain TREPR_1201 PF06480 FtsH Extracellular TREPR_1202 PF01171 PP-loop family TREPR_1203 PF01047 MarR family TREPR_1205 PF07690 Major Facilitator Superfamily TREPR_1206 PF14693 Ribosomal protein TL5, C-terminal domain TREPR_1206 PF01386 Ribosomal L25p family TREPR_1208 PF04026 SpoVG TREPR_1209 PF08544 GHMP kinases C terminal TREPR_1209 PF00288 GHMP kinases N terminal domain TREPR_1214 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TREPR_1214 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TREPR_1215 PF01813 ATP synthase subunit D TREPR_1218 PF01556 DnaJ C terminal domain TREPR_1218 PF00226 DnaJ domain TREPR_1218 PF00684 DnaJ central domain TREPR_1219 PF00557 Metallopeptidase family M24 TREPR_1220 PF00595 PDZ domain TREPR_1221 PF08666 SAF domain TREPR_1221 PF03102 NeuB family TREPR_1222 PF01381 Helix-turn-helix TREPR_1223 PF01967 MoaC family TREPR_1224 PF04055 Radical SAM superfamily TREPR_1224 PF06463 Molybdenum Cofactor Synthesis C TREPR_1226 PF00994 Probable molybdopterin binding domain TREPR_1228 PF01053 Cys/Met metabolism PLP-dependent enzyme TREPR_1230 PF00119 ATP synthase A chain TREPR_1231 PF00137 ATP synthase subunit C TREPR_1232 PF00430 ATP synthase B/B' CF(0) TREPR_1233 PF00213 ATP synthase delta (OSCP) subunit TREPR_1234 PF00306 ATP synthase alpha/beta chain, C terminal domain TREPR_1234 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREPR_1234 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREPR_1236 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREPR_1236 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREPR_1249 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1249 PF00672 HAMP domain TREPR_1249 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1249 PF01627 Hpt domain TREPR_1249 PF00072 Response regulator receiver domain TREPR_1249 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1250 PF01627 Hpt domain TREPR_1250 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1250 PF00072 Response regulator receiver domain TREPR_1250 PF00672 HAMP domain TREPR_1250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1251 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1251 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1251 PF01627 Hpt domain TREPR_1251 PF00672 HAMP domain TREPR_1251 PF00072 Response regulator receiver domain TREPR_1253 PF02608 ABC transporter substrate-binding protein PnrA-like TREPR_1254 PF00072 Response regulator receiver domain TREPR_1254 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1254 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1254 PF00672 HAMP domain TREPR_1254 PF01627 Hpt domain TREPR_1255 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1255 PF00072 Response regulator receiver domain TREPR_1255 PF01627 Hpt domain TREPR_1255 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1255 PF00672 HAMP domain TREPR_1256 PF09308 LuxQ, periplasmic TREPR_1256 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1256 PF00072 Response regulator receiver domain TREPR_1256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1257 PF00211 Adenylate and Guanylate cyclase catalytic domain TREPR_1258 PF00672 HAMP domain TREPR_1258 PF01627 Hpt domain TREPR_1258 PF00072 Response regulator receiver domain TREPR_1258 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1258 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1260 PF00072 Response regulator receiver domain TREPR_1260 PF00989 PAS fold TREPR_1260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1260 PF01627 Hpt domain TREPR_1260 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1260 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREPR_1261 PF00211 Adenylate and Guanylate cyclase catalytic domain TREPR_1265 PF01012 Electron transfer flavoprotein domain TREPR_1266 PF00766 Electron transfer flavoprotein FAD-binding domain TREPR_1266 PF01012 Electron transfer flavoprotein domain TREPR_1267 PF02770 Acyl-CoA dehydrogenase, middle domain TREPR_1267 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TREPR_1267 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TREPR_1268 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TREPR_1269 PF01039 Carboxyl transferase domain TREPR_1270 PF02785 Biotin carboxylase C-terminal domain TREPR_1270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TREPR_1270 PF00289 Biotin carboxylase, N-terminal domain TREPR_1271 PF00364 Biotin-requiring enzyme TREPR_1274 PF02086 D12 class N6 adenine-specific DNA methyltransferase TREPR_1276 PF07977 FabA-like domain TREPR_1277 PF02801 Beta-ketoacyl synthase, C-terminal domain TREPR_1277 PF00109 Beta-ketoacyl synthase, N-terminal domain TREPR_1279 PF00698 Acyl transferase domain TREPR_1280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TREPR_1280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TREPR_1281 PF07722 Peptidase C26 TREPR_1284 PF01546 Peptidase family M20/M25/M40 TREPR_1286 PF06857 Malonate decarboxylase delta subunit (MdcD) TREPR_1287 PF03328 HpcH/HpaI aldolase/citrate lyase family TREPR_1288 PF04223 Citrate lyase, alpha subunit (CitF) TREPR_1289 PF08218 Citrate lyase ligase C-terminal domain TREPR_1289 PF00583 Acetyltransferase (GNAT) family TREPR_1299 PF01546 Peptidase family M20/M25/M40 TREPR_1301 PF02310 B12 binding domain TREPR_1302 PF13941 MutL protein TREPR_1303 PF06368 Methylaspartate mutase E chain (MutE) TREPR_1304 PF05034 Methylaspartate ammonia-lyase N-terminus TREPR_1304 PF07476 Methylaspartate ammonia-lyase C-terminus TREPR_1306 PF05681 Fumarate hydratase (Fumerase) TREPR_1308 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase TREPR_1308 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase TREPR_1309 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TREPR_1309 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TREPR_1310 PF02779 Transketolase, pyrimidine binding domain TREPR_1310 PF02780 Transketolase, C-terminal domain TREPR_1311 PF00456 Transketolase, thiamine diphosphate binding domain TREPR_1313 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREPR_1315 PF03480 Bacterial extracellular solute-binding protein, family 7 TREPR_1316 PF01261 Xylose isomerase-like TIM barrel TREPR_1317 PF00392 Bacterial regulatory proteins, gntR family TREPR_1317 PF07729 FCD domain TREPR_1321 PF00561 alpha/beta hydrolase fold TREPR_1322 PF01557 Fumarylacetoacetate (FAA) hydrolase family TREPR_1323 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation TREPR_1323 PF01118 Semialdehyde dehydrogenase, NAD binding domain TREPR_1324 PF07836 DmpG-like communication domain TREPR_1324 PF00682 HMGL-like TREPR_1326 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TREPR_1328 PF01229 Glycosyl hydrolases family 39 TREPR_1329 PF00933 Glycosyl hydrolase family 3 N terminal domain TREPR_1332 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_1333 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1334 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1337 PF00135 Carboxylesterase family TREPR_1338 PF00135 Carboxylesterase family TREPR_1340 PF03099 Biotin/lipoate A/B protein ligase family TREPR_1340 PF12706 Beta-lactamase superfamily domain TREPR_1343 PF02368 Bacterial Ig-like domain (group 2) TREPR_1345 PF00795 Carbon-nitrogen hydrolase TREPR_1345 PF02540 NAD synthase TREPR_1350 PF00795 Carbon-nitrogen hydrolase TREPR_1350 PF02540 NAD synthase TREPR_1351 PF00356 Bacterial regulatory proteins, lacI family TREPR_1352 PF03313 Serine dehydratase alpha chain TREPR_1353 PF00005 ABC transporter TREPR_1354 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1355 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREPR_1357 PF02872 5'-nucleotidase, C-terminal domain TREPR_1357 PF00149 Calcineurin-like phosphoesterase TREPR_1359 PF13941 MutL protein TREPR_1360 PF02310 B12 binding domain TREPR_1360 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase TREPR_1360 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit TREPR_1361 PF16552 D-ornithine 4,5-aminomutase alpha-subunit TREPR_1362 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_1365 PF01168 Alanine racemase, N-terminal domain TREPR_1366 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TREPR_1366 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TREPR_1368 PF01479 S4 domain TREPR_1368 PF00849 RNA pseudouridylate synthase TREPR_1369 PF01411 tRNA synthetases class II (A) TREPR_1369 PF02272 DHHA1 domain TREPR_1369 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREPR_1370 PF01923 Cobalamin adenosyltransferase TREPR_1372 PF13378 Enolase C-terminal domain-like TREPR_1372 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TREPR_1373 PF00005 ABC transporter TREPR_1373 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_1374 PF00005 ABC transporter TREPR_1374 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_1376 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1377 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_1378 PF00005 ABC transporter TREPR_1378 PF00664 ABC transporter transmembrane region TREPR_1379 PF00005 ABC transporter TREPR_1379 PF00664 ABC transporter transmembrane region TREPR_1380 PF08361 MAATS-type transcriptional repressor, C-terminal region TREPR_1380 PF00440 Bacterial regulatory proteins, tetR family TREPR_1383 PF00529 HlyD membrane-fusion protein of T1SS TREPR_1383 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TREPR_1384 PF00873 AcrB/AcrD/AcrF family TREPR_1394 PF08334 Type II secretion system (T2SS), protein G TREPR_1394 PF07963 Prokaryotic N-terminal methylation motif TREPR_1395 PF00482 Type II secretion system (T2SS), protein F TREPR_1396 PF00437 Type II/IV secretion system protein TREPR_1397 PF00263 Bacterial type II and III secretion system protein TREPR_1397 PF03958 Bacterial type II/III secretion system short domain TREPR_1406 PF01381 Helix-turn-helix TREPR_1420 PF13419 Haloacid dehalogenase-like hydrolase TREPR_1421 PF00156 Phosphoribosyl transferase domain TREPR_1439 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system TREPR_1443 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1449 PF03239 Iron permease FTR1 family TREPR_1450 PF10634 Fe2+ transport protein TREPR_1453 PF12704 MacB-like periplasmic core domain TREPR_1453 PF00005 ABC transporter TREPR_1453 PF02687 FtsX-like permease family TREPR_1454 PF00005 ABC transporter TREPR_1457 PF09285 Elongation factor P, C-terminal TREPR_1457 PF01132 Elongation factor P (EF-P) OB domain TREPR_1457 PF08207 Elongation factor P (EF-P) KOW-like domain TREPR_1459 PF01432 Peptidase family M3 TREPR_1459 PF08439 Oligopeptidase F TREPR_1465 PF13416 Bacterial extracellular solute-binding protein TREPR_1466 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1467 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1468 PF08402 TOBE domain TREPR_1468 PF00005 ABC transporter TREPR_1471 PF00164 Ribosomal protein S12/S23 TREPR_1472 PF00177 Ribosomal protein S7p/S5e TREPR_1475 PF03144 Elongation factor Tu domain 2 TREPR_1475 PF03143 Elongation factor Tu C-terminal domain TREPR_1475 PF00009 Elongation factor Tu GTP binding domain TREPR_1476 PF00338 Ribosomal protein S10p/S20e TREPR_1477 PF00297 Ribosomal protein L3 TREPR_1478 PF00573 Ribosomal protein L4/L1 family TREPR_1479 PF00276 Ribosomal protein L23 TREPR_1480 PF00181 Ribosomal Proteins L2, RNA binding domain TREPR_1480 PF03947 Ribosomal Proteins L2, C-terminal domain TREPR_1481 PF00203 Ribosomal protein S19 TREPR_1482 PF00237 Ribosomal protein L22p/L17e TREPR_1483 PF07650 KH domain TREPR_1483 PF00189 Ribosomal protein S3, C-terminal domain TREPR_1484 PF00252 Ribosomal protein L16p/L10e TREPR_1485 PF00831 Ribosomal L29 protein TREPR_1486 PF00366 Ribosomal protein S17 TREPR_1487 PF00238 Ribosomal protein L14p/L23e TREPR_1488 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TREPR_1488 PF00467 KOW motif TREPR_1490 PF00253 Ribosomal protein S14p/S29e TREPR_1491 PF00410 Ribosomal protein S8 TREPR_1492 PF00347 Ribosomal protein L6 TREPR_1493 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TREPR_1494 PF00333 Ribosomal protein S5, N-terminal domain TREPR_1494 PF03719 Ribosomal protein S5, C-terminal domain TREPR_1495 PF00327 Ribosomal protein L30p/L7e TREPR_1496 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TREPR_1497 PF00344 SecY translocase TREPR_1498 PF00416 Ribosomal protein S13/S18 TREPR_1499 PF00411 Ribosomal protein S11 TREPR_1500 PF00163 Ribosomal protein S4/S9 N-terminal domain TREPR_1500 PF01479 S4 domain TREPR_1501 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TREPR_1501 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TREPR_1501 PF01000 RNA polymerase Rpb3/RpoA insert domain TREPR_1502 PF01196 Ribosomal protein L17 TREPR_1504 PF13291 ACT domain TREPR_1504 PF04607 Region found in RelA / SpoT proteins TREPR_1504 PF02824 TGS domain TREPR_1505 PF05175 Methyltransferase small domain TREPR_1505 PF17827 PrmC N-terminal domain TREPR_1506 PF00472 RF-1 domain TREPR_1506 PF03462 PCRF domain TREPR_1509 PF08402 TOBE domain TREPR_1509 PF00005 ABC transporter TREPR_1510 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1512 PF11975 Family 4 glycosyl hydrolase C-terminal domain TREPR_1512 PF02056 Family 4 glycosyl hydrolase TREPR_1513 PF00356 Bacterial regulatory proteins, lacI family TREPR_1514 PF00294 pfkB family carbohydrate kinase TREPR_1518 PF12833 Helix-turn-helix domain TREPR_1519 PF00005 ABC transporter TREPR_1520 PF02653 Branched-chain amino acid transport system / permease component TREPR_1521 PF13407 Periplasmic binding protein domain TREPR_1523 PF12848 ABC transporter TREPR_1523 PF00005 ABC transporter TREPR_1527 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1528 PF17912 MalK OB fold domain TREPR_1528 PF03459 TOBE domain TREPR_1528 PF00005 ABC transporter TREPR_1529 PF03668 P-loop ATPase protein family TREPR_1530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_1530 PF00005 ABC transporter TREPR_1531 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_1531 PF00005 ABC transporter TREPR_1532 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1533 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_1535 PF01464 Transglycosylase SLT domain TREPR_1542 PF02915 Rubrerythrin TREPR_1543 PF00301 Rubredoxin TREPR_1545 PF02699 Preprotein translocase subunit TREPR_1546 PF02355 Protein export membrane protein TREPR_1547 PF02355 Protein export membrane protein TREPR_1548 PF02401 LytB protein TREPR_1549 PF13556 PucR C-terminal helix-turn-helix domain TREPR_1549 PF05651 Putative sugar diacid recognition TREPR_1549 PF17853 GGDEF-like domain TREPR_1555 PF02310 B12 binding domain TREPR_1555 PF02607 B12 binding domain TREPR_1559 PF07690 Major Facilitator Superfamily TREPR_1561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREPR_1561 PF03466 LysR substrate binding domain TREPR_1569 PF01554 MatE TREPR_1570 PF08264 Anticodon-binding domain of tRNA TREPR_1570 PF10458 Valyl tRNA synthetase tRNA binding arm TREPR_1570 PF00133 tRNA synthetases class I (I, L, M and V) TREPR_1573 PF12832 MFS_1 like family TREPR_1574 PF07228 Stage II sporulation protein E (SpoIIE) TREPR_1574 PF00672 HAMP domain TREPR_1575 PF03358 NADPH-dependent FMN reductase TREPR_1578 PF00037 4Fe-4S binding domain TREPR_1579 PF10145 Phage-related minor tail protein TREPR_1579 PF01551 Peptidase family M23 TREPR_1579 PF01464 Transglycosylase SLT domain TREPR_1582 PF03358 NADPH-dependent FMN reductase TREPR_1583 PF00905 Penicillin binding protein transpeptidase domain TREPR_1583 PF00912 Transglycosylase TREPR_1583 PF17092 Penicillin-binding protein OB-like domain TREPR_1584 PF17762 HTH domain found in ParB protein TREPR_1584 PF02195 ParB-like nuclease domain TREPR_1586 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1586 PF00072 Response regulator receiver domain TREPR_1586 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1586 PF09308 LuxQ, periplasmic TREPR_1587 PF00135 Carboxylesterase family TREPR_1588 PF00009 Elongation factor Tu GTP binding domain TREPR_1588 PF00679 Elongation factor G C-terminus TREPR_1588 PF14492 Elongation Factor G, domain II TREPR_1588 PF03144 Elongation factor Tu domain 2 TREPR_1588 PF03764 Elongation factor G, domain IV TREPR_1589 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_1589 PF00672 HAMP domain TREPR_1599 PF00135 Carboxylesterase family TREPR_1600 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TREPR_1600 PF06165 Glycosyltransferase family 36 TREPR_1602 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1605 PF00232 Glycosyl hydrolase family 1 TREPR_1607 PF00248 Aldo/keto reductase family TREPR_1608 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1609 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1612 PF04041 beta-1,4-mannooligosaccharide phosphorylase TREPR_1614 PF07840 FadR C-terminal domain TREPR_1614 PF00392 Bacterial regulatory proteins, gntR family TREPR_1617 PF13361 UvrD-like helicase C-terminal domain TREPR_1617 PF00580 UvrD/REP helicase N-terminal domain TREPR_1619 PF01725 Ham1 family TREPR_1620 PF00271 Helicase conserved C-terminal domain TREPR_1620 PF16124 RecQ zinc-binding TREPR_1620 PF00270 DEAD/DEAH box helicase TREPR_1620 PF09382 RQC domain TREPR_1620 PF00570 HRDC domain TREPR_1621 PF00365 Phosphofructokinase TREPR_1622 PF00696 Amino acid kinase family TREPR_1623 PF01841 Transglutaminase-like superfamily TREPR_1626 PF04545 Sigma-70, region 4 TREPR_1626 PF04539 Sigma-70 region 3 TREPR_1626 PF04542 Sigma-70 region 2 TREPR_1627 PF09190 DALR domain TREPR_1627 PF01406 tRNA synthetases class I (C) catalytic domain TREPR_1628 PF00535 Glycosyl transferase family 2 TREPR_1633 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1633 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1633 PF01627 Hpt domain TREPR_1633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1633 PF00672 HAMP domain TREPR_1633 PF00072 Response regulator receiver domain TREPR_1635 PF00694 Aconitase C-terminal domain TREPR_1637 PF00330 Aconitase family (aconitate hydratase) TREPR_1642 PF00691 OmpA family TREPR_1645 PF05198 Translation initiation factor IF-3, N-terminal domain TREPR_1645 PF00707 Translation initiation factor IF-3, C-terminal domain TREPR_1646 PF01632 Ribosomal protein L35 TREPR_1647 PF00453 Ribosomal protein L20 TREPR_1649 PF05164 Cell division protein ZapA TREPR_1650 PF01238 Phosphomannose isomerase type I TREPR_1651 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TREPR_1652 PF11849 Domain of unknown function (DUF3369) TREPR_1653 PF05698 Bacterial trigger factor protein (TF) C-terminus TREPR_1654 PF00072 Response regulator receiver domain TREPR_1654 PF00211 Adenylate and Guanylate cyclase catalytic domain TREPR_1655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1655 PF00072 Response regulator receiver domain TREPR_1655 PF01584 CheW-like domain TREPR_1655 PF01627 Hpt domain TREPR_1656 PF08447 PAS fold TREPR_1656 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_1656 PF13426 PAS domain TREPR_1657 PF02743 Cache domain TREPR_1657 PF00672 HAMP domain TREPR_1657 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_1658 PF08448 PAS fold TREPR_1658 PF03705 CheR methyltransferase, all-alpha domain TREPR_1658 PF01739 CheR methyltransferase, SAM binding domain TREPR_1658 PF01339 CheB methylesterase TREPR_1659 PF01339 CheB methylesterase TREPR_1659 PF00072 Response regulator receiver domain TREPR_1664 PF02743 Cache domain TREPR_1664 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_1664 PF00672 HAMP domain TREPR_1666 PF00005 ABC transporter TREPR_1670 PF00005 ABC transporter TREPR_1675 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit TREPR_1676 PF00682 HMGL-like TREPR_1676 PF02436 Conserved carboxylase domain TREPR_1681 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TREPR_1681 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TREPR_1681 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TREPR_1681 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TREPR_1682 PF16811 TRAP transporter T-component TREPR_1684 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TREPR_1685 PF00842 Alanine racemase, C-terminal domain TREPR_1685 PF01168 Alanine racemase, N-terminal domain TREPR_1686 PF02562 PhoH-like protein TREPR_1687 PF01966 HD domain TREPR_1687 PF07698 7TM receptor with intracellular HD hydrolase TREPR_1687 PF07697 7TM-HD extracellular TREPR_1688 PF02130 Uncharacterized protein family UPF0054 TREPR_1689 PF03471 Transporter associated domain TREPR_1689 PF00571 CBS domain TREPR_1695 PF02653 Branched-chain amino acid transport system / permease component TREPR_1696 PF00005 ABC transporter TREPR_1700 PF00027 Cyclic nucleotide-binding domain TREPR_1700 PF00325 Bacterial regulatory proteins, crp family TREPR_1701 PF17179 4Fe-4S dicluster domain TREPR_1702 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TREPR_1702 PF00175 Oxidoreductase NAD-binding domain TREPR_1703 PF13187 4Fe-4S dicluster domain TREPR_1703 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TREPR_1703 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TREPR_1704 PF00072 Response regulator receiver domain TREPR_1705 PF00672 HAMP domain TREPR_1705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_1708 PF13416 Bacterial extracellular solute-binding protein TREPR_1710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1710 PF01627 Hpt domain TREPR_1710 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1710 PF00672 HAMP domain TREPR_1710 PF00072 Response regulator receiver domain TREPR_1715 PF01702 Queuine tRNA-ribosyltransferase TREPR_1719 PF00834 Ribulose-phosphate 3 epimerase family TREPR_1722 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TREPR_1722 PF14572 Phosphoribosyl synthetase-associated domain TREPR_1723 PF04055 Radical SAM superfamily TREPR_1727 PF13847 Methyltransferase domain TREPR_1730 PF00919 Uncharacterized protein family UPF0004 TREPR_1730 PF01938 TRAM domain TREPR_1730 PF04055 Radical SAM superfamily TREPR_1735 PF05958 tRNA (Uracil-5-)-methyltransferase TREPR_1737 PF12627 Probable RNA and SrmB- binding site of polymerase A TREPR_1737 PF01743 Poly A polymerase head domain TREPR_1737 PF12626 Polymerase A arginine-rich C-terminus TREPR_1741 PF00557 Metallopeptidase family M24 TREPR_1741 PF01321 Creatinase/Prolidase N-terminal domain TREPR_1742 PF00149 Calcineurin-like phosphoesterase TREPR_1742 PF02872 5'-nucleotidase, C-terminal domain TREPR_1743 PF00849 RNA pseudouridylate synthase TREPR_1746 PF11973 NQRA C-terminal domain TREPR_1746 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) TREPR_1747 PF03116 NQR2, RnfD, RnfE family TREPR_1750 PF02508 Rnf-Nqr subunit, membrane protein TREPR_1751 PF03065 Glycosyl hydrolase family 57 TREPR_1751 PF09095 Domain of unknown function (DUF1926) TREPR_1751 PF09094 Domain of unknown function (DUF1925) TREPR_1754 PF02576 RimP N-terminal domain TREPR_1754 PF17384 RimP C-terminal SH3 domain TREPR_1755 PF00575 S1 RNA binding domain TREPR_1755 PF08529 NusA N-terminal domain TREPR_1755 PF13184 NusA-like KH domain TREPR_1756 PF11987 Translation-initiation factor 2 TREPR_1756 PF04760 Translation initiation factor IF-2, N-terminal region TREPR_1756 PF00009 Elongation factor Tu GTP binding domain TREPR_1757 PF02033 Ribosome-binding factor A TREPR_1758 PF01509 TruB family pseudouridylate synthase (N terminal domain) TREPR_1759 PF01687 Riboflavin kinase TREPR_1759 PF06574 FAD synthetase TREPR_1760 PF00312 Ribosomal protein S15 TREPR_1761 PF00575 S1 RNA binding domain TREPR_1761 PF00013 KH domain TREPR_1761 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TREPR_1761 PF03725 3' exoribonuclease family, domain 2 TREPR_1761 PF01138 3' exoribonuclease family, domain 1 TREPR_1762 PF00692 dUTPase TREPR_1766 PF00472 RF-1 domain TREPR_1766 PF03462 PCRF domain TREPR_1768 PF00448 SRP54-type protein, GTPase domain TREPR_1768 PF02881 SRP54-type protein, helical bundle domain TREPR_1770 PF12704 MacB-like periplasmic core domain TREPR_1770 PF02687 FtsX-like permease family TREPR_1771 PF00005 ABC transporter TREPR_1773 PF00694 Aconitase C-terminal domain TREPR_1773 PF00330 Aconitase family (aconitate hydratase) TREPR_1775 PF02142 MGS-like domain TREPR_1775 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TREPR_1775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TREPR_1779 PF02896 PEP-utilising enzyme, TIM barrel domain TREPR_1779 PF05524 PEP-utilising enzyme, N-terminal TREPR_1779 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREPR_1779 PF00381 PTS HPr component phosphorylation site TREPR_1779 PF00391 PEP-utilising enzyme, mobile domain TREPR_1780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_1782 PF01979 Amidohydrolase family TREPR_1783 PF00557 Metallopeptidase family M24 TREPR_1783 PF01321 Creatinase/Prolidase N-terminal domain TREPR_1784 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1784 PF12911 N-terminal TM domain of oligopeptide transport permease C TREPR_1785 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1786 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_1786 PF00005 ABC transporter TREPR_1787 PF00005 ABC transporter TREPR_1787 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_1789 PF00849 RNA pseudouridylate synthase TREPR_1789 PF01479 S4 domain TREPR_1794 PF13173 AAA domain TREPR_1794 PF13635 Domain of unknown function (DUF4143) TREPR_1795 PF01588 Putative tRNA binding domain TREPR_1795 PF09334 tRNA synthetases class I (M) TREPR_1798 PF01488 Shikimate / quinate 5-dehydrogenase TREPR_1798 PF08501 Shikimate dehydrogenase substrate binding domain TREPR_1800 PF00501 AMP-binding enzyme TREPR_1800 PF13193 AMP-binding enzyme C-terminal domain TREPR_1802 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TREPR_1803 PF00128 Alpha amylase, catalytic domain TREPR_1805 PF05161 MOFRL family TREPR_1805 PF13660 Domain of unknown function (DUF4147) TREPR_1808 PF02547 Queuosine biosynthesis protein TREPR_1809 PF17864 RuvB AAA lid domain TREPR_1809 PF05491 RuvB C-terminal winged helix domain TREPR_1809 PF05496 Holliday junction DNA helicase RuvB P-loop domain TREPR_1813 PF03781 Sulfatase-modifying factor enzyme 1 TREPR_1818 PF00580 UvrD/REP helicase N-terminal domain TREPR_1818 PF13361 UvrD-like helicase C-terminal domain TREPR_1827 PF04539 Sigma-70 region 3 TREPR_1827 PF00140 Sigma-70 factor, region 1.2 TREPR_1827 PF04545 Sigma-70, region 4 TREPR_1827 PF04542 Sigma-70 region 2 TREPR_1827 PF03979 Sigma-70 factor, region 1.1 TREPR_1829 PF01330 RuvA N terminal domain TREPR_1832 PF00270 DEAD/DEAH box helicase TREPR_1832 PF09369 Domain of unknown function (DUF1998) TREPR_1832 PF00271 Helicase conserved C-terminal domain TREPR_1834 PF00004 ATPase family associated with various cellular activities (AAA) TREPR_1834 PF07724 AAA domain (Cdc48 subfamily) TREPR_1834 PF10431 C-terminal, D2-small domain, of ClpB protein TREPR_1834 PF02861 Clp amino terminal domain, pathogenicity island component TREPR_1834 PF17871 AAA lid domain TREPR_1836 PF02272 DHHA1 domain TREPR_1836 PF01368 DHH family TREPR_1839 PF02896 PEP-utilising enzyme, TIM barrel domain TREPR_1839 PF00391 PEP-utilising enzyme, mobile domain TREPR_1841 PF01515 Phosphate acetyl/butaryl transferase TREPR_1844 PF04055 Radical SAM superfamily TREPR_1844 PF00919 Uncharacterized protein family UPF0004 TREPR_1846 PF01226 Formate/nitrite transporter TREPR_1854 PF03781 Sulfatase-modifying factor enzyme 1 TREPR_1855 PF03781 Sulfatase-modifying factor enzyme 1 TREPR_1860 PF00196 Bacterial regulatory proteins, luxR family TREPR_1860 PF00072 Response regulator receiver domain TREPR_1861 PF17200 Single Cache domain 2 TREPR_1861 PF07730 Histidine kinase TREPR_1879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1879 PF00672 HAMP domain TREPR_1879 PF17149 Periplasmic sensor domain found in signal transduction proteins TREPR_1879 PF01627 Hpt domain TREPR_1879 PF00072 Response regulator receiver domain TREPR_1879 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1895 PF01618 MotA/TolQ/ExbB proton channel family TREPR_1911 PF00270 DEAD/DEAH box helicase TREPR_1911 PF03461 TRCF domain TREPR_1911 PF17757 UvrB interaction domain TREPR_1911 PF02559 CarD-like/TRCF domain TREPR_1911 PF00271 Helicase conserved C-terminal domain TREPR_1913 PF01553 Acyltransferase TREPR_1919 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREPR_1919 PF07196 Flagellin hook IN motif TREPR_1920 PF00700 Bacterial flagellin C-terminal helical region TREPR_1920 PF00669 Bacterial flagellin N-terminal helical region TREPR_1921 PF02623 FliW protein TREPR_1922 PF02599 Global regulator protein family TREPR_1923 PF01966 HD domain TREPR_1923 PF00672 HAMP domain TREPR_1924 PF00814 Glycoprotease family TREPR_1925 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TREPR_1929 PF02465 Flagellar hook-associated protein 2 N-terminus TREPR_1929 PF07195 Flagellar hook-associated protein 2 C-terminus TREPR_1931 PF00700 Bacterial flagellin C-terminal helical region TREPR_1931 PF00669 Bacterial flagellin N-terminal helical region TREPR_1932 PF00669 Bacterial flagellin N-terminal helical region TREPR_1932 PF00700 Bacterial flagellin C-terminal helical region TREPR_1935 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TREPR_1935 PF02779 Transketolase, pyrimidine binding domain TREPR_1935 PF02780 Transketolase, C-terminal domain TREPR_1936 PF02457 DisA bacterial checkpoint controller nucleotide-binding TREPR_1937 PF07949 YbbR-like protein TREPR_1938 PF01648 4'-phosphopantetheinyl transferase superfamily TREPR_1940 PF01416 tRNA pseudouridine synthase TREPR_1941 PF01189 16S rRNA methyltransferase RsmB/F TREPR_1941 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TREPR_1941 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF TREPR_1942 PF01325 Iron dependent repressor, N-terminal DNA binding domain TREPR_1942 PF18357 Diphteria toxin repressor SH3 domain TREPR_1942 PF02742 Iron dependent repressor, metal binding and dimerisation domain TREPR_1943 PF02502 Ribose/Galactose Isomerase TREPR_1945 PF01649 Ribosomal protein S20 TREPR_1946 PF00216 Bacterial DNA-binding protein TREPR_1947 PF00795 Carbon-nitrogen hydrolase TREPR_1948 PF00072 Response regulator receiver domain TREPR_1948 PF00486 Transcriptional regulatory protein, C terminal TREPR_1950 PF02464 Competence-damaged protein TREPR_1950 PF00994 Probable molybdopterin binding domain TREPR_1950 PF18146 Damage-inducible protein CinA KH domain TREPR_1951 PF00574 Clp protease TREPR_1955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_1956 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1958 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_1958 PF00005 ABC transporter TREPR_1959 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_1959 PF00005 ABC transporter TREPR_1964 PF13411 MerR HTH family regulatory protein TREPR_1965 PF07085 DRTGG domain TREPR_1965 PF01368 DHH family TREPR_1965 PF00571 CBS domain TREPR_1965 PF02833 DHHA2 domain TREPR_1967 PF01195 Peptidyl-tRNA hydrolase TREPR_1968 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TREPR_1968 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TREPR_1968 PF01842 ACT domain TREPR_1969 PF03819 MazG nucleotide pyrophosphohydrolase domain TREPR_1970 PF02308 MgtC family TREPR_1972 PF00356 Bacterial regulatory proteins, lacI family TREPR_1974 PF13416 Bacterial extracellular solute-binding protein TREPR_1975 PF08402 TOBE domain TREPR_1975 PF00005 ABC transporter TREPR_1976 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1980 PF00005 ABC transporter TREPR_1980 PF08402 TOBE domain TREPR_1981 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_1985 PF01627 Hpt domain TREPR_1985 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1985 PF00072 Response regulator receiver domain TREPR_1985 PF00672 HAMP domain TREPR_1986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_1986 PF00672 HAMP domain TREPR_1986 PF00512 His Kinase A (phospho-acceptor) domain TREPR_1986 PF01627 Hpt domain TREPR_1986 PF00072 Response regulator receiver domain TREPR_1986 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_1988 PF00534 Glycosyl transferases group 1 TREPR_1990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREPR_1990 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TREPR_1990 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TREPR_1990 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TREPR_1990 PF10371 Domain of unknown function TREPR_1995 PF01565 FAD binding domain TREPR_1995 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TREPR_1997 PF00027 Cyclic nucleotide-binding domain TREPR_1997 PF13545 Crp-like helix-turn-helix domain TREPR_2000 PF07859 alpha/beta hydrolase fold TREPR_2015 PF00196 Bacterial regulatory proteins, luxR family TREPR_2015 PF03472 Autoinducer binding domain TREPR_2024 PF04851 Type III restriction enzyme, res subunit TREPR_2024 PF08463 EcoEI R protein C-terminal TREPR_2024 PF00271 Helicase conserved C-terminal domain TREPR_2024 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) TREPR_2026 PF00717 Peptidase S24-like TREPR_2026 PF01726 LexA DNA binding domain TREPR_2029 PF01336 OB-fold nucleic acid binding domain TREPR_2029 PF02811 PHP domain TREPR_2029 PF14579 Helix-hairpin-helix motif TREPR_2029 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREPR_2029 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREPR_2064 PF00872 Transposase, Mutator family TREPR_2065 PF00293 NUDIX domain TREPR_2067 PF02743 Cache domain TREPR_2067 PF00211 Adenylate and Guanylate cyclase catalytic domain TREPR_2067 PF00672 HAMP domain TREPR_2068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2068 PF00512 His Kinase A (phospho-acceptor) domain TREPR_2068 PF09308 LuxQ, periplasmic TREPR_2068 PF00072 Response regulator receiver domain TREPR_2069 PF00672 HAMP domain TREPR_2069 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_2069 PF00072 Response regulator receiver domain TREPR_2069 PF01627 Hpt domain TREPR_2069 PF00512 His Kinase A (phospho-acceptor) domain TREPR_2069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2072 PF00293 NUDIX domain TREPR_2073 PF00571 CBS domain TREPR_2073 PF03471 Transporter associated domain TREPR_2073 PF01595 Cyclin M transmembrane N-terminal domain TREPR_2083 PF00072 Response regulator receiver domain TREPR_2083 PF00196 Bacterial regulatory proteins, luxR family TREPR_2122 PF01909 Nucleotidyltransferase domain TREPR_2124 PF00534 Glycosyl transferases group 1 TREPR_2124 PF08323 Starch synthase catalytic domain TREPR_2126 PF00501 AMP-binding enzyme TREPR_2126 PF14535 AMP-binding enzyme C-terminal domain TREPR_2127 PF00005 ABC transporter TREPR_2127 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_2128 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_2128 PF00005 ABC transporter TREPR_2129 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2129 PF12911 N-terminal TM domain of oligopeptide transport permease C TREPR_2130 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2131 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_2137 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2138 PF00005 ABC transporter TREPR_2145 PF00501 AMP-binding enzyme TREPR_2145 PF14535 AMP-binding enzyme C-terminal domain TREPR_2148 PF00474 Sodium:solute symporter family TREPR_2151 PF00270 DEAD/DEAH box helicase TREPR_2151 PF00271 Helicase conserved C-terminal domain TREPR_2152 PF00571 CBS domain TREPR_2152 PF03471 Transporter associated domain TREPR_2152 PF01595 Cyclin M transmembrane N-terminal domain TREPR_2157 PF00872 Transposase, Mutator family TREPR_2164 PF08003 Protein of unknown function (DUF1698) TREPR_2168 PF17841 BID domain of Bartonella effector protein (Bep) TREPR_2168 PF02661 Fic/DOC family TREPR_2176 PF00872 Transposase, Mutator family TREPR_2177 PF00106 short chain dehydrogenase TREPR_2206 PF00589 Phage integrase family TREPR_2206 PF13495 Phage integrase, N-terminal SAM-like domain TREPR_2210 PF10502 Signal peptidase, peptidase S26 TREPR_2211 PF01551 Peptidase family M23 TREPR_2211 PF01476 LysM domain TREPR_2211 PF08525 Opacity-associated protein A N-terminal motif TREPR_2214 PF00768 D-alanyl-D-alanine carboxypeptidase TREPR_2214 PF07943 Penicillin-binding protein 5, C-terminal domain TREPR_2215 PF01336 OB-fold nucleic acid binding domain TREPR_2215 PF00152 tRNA synthetases class II (D, K and N) TREPR_2216 PF01640 Peptidase C10 family TREPR_2216 PF13734 Spi protease inhibitor TREPR_2220 PF03358 NADPH-dependent FMN reductase TREPR_2221 PF03033 Glycosyltransferase family 28 N-terminal domain TREPR_2221 PF04101 Glycosyltransferase family 28 C-terminal domain TREPR_2222 PF02674 Colicin V production protein TREPR_2223 PF09115 DNA polymerase III, delta subunit, C terminal TREPR_2224 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain TREPR_2224 PF07228 Stage II sporulation protein E (SpoIIE) TREPR_2225 PF01740 STAS domain TREPR_2227 PF07690 Major Facilitator Superfamily TREPR_2228 PF13188 PAS domain TREPR_2228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2228 PF00512 His Kinase A (phospho-acceptor) domain TREPR_2228 PF00989 PAS fold TREPR_2228 PF13426 PAS domain TREPR_2229 PF00072 Response regulator receiver domain TREPR_2229 PF00158 Sigma-54 interaction domain TREPR_2229 PF02954 Bacterial regulatory protein, Fis family TREPR_2235 PF02594 Uncharacterised ACR, YggU family COG1872 TREPR_2238 PF00753 Metallo-beta-lactamase superfamily TREPR_2238 PF16123 Hydroxyacylglutathione hydrolase C-terminus TREPR_2242 PF01177 Asp/Glu/Hydantoin racemase TREPR_2243 PF16745 RsgA N-terminal domain TREPR_2243 PF03193 RsgA GTPase TREPR_2244 PF01713 Smr domain TREPR_2244 PF00488 MutS domain V TREPR_2248 PF02863 Arginine repressor, C-terminal domain TREPR_2248 PF01316 Arginine repressor, DNA binding domain TREPR_2249 PF00342 Phosphoglucose isomerase TREPR_2253 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TREPR_2253 PF00271 Helicase conserved C-terminal domain TREPR_2253 PF04408 Helicase associated domain (HA2) TREPR_2253 PF00270 DEAD/DEAH box helicase TREPR_2255 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TREPR_2255 PF00391 PEP-utilising enzyme, mobile domain TREPR_2255 PF02896 PEP-utilising enzyme, TIM barrel domain TREPR_2268 PF00872 Transposase, Mutator family TREPR_2271 PF13173 AAA domain TREPR_2271 PF13635 Domain of unknown function (DUF4143) TREPR_2280 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TREPR_2280 PF18766 SWI2/SNF2 ATPase TREPR_2280 PF11867 Domain of unknown function (DUF3387) TREPR_2283 PF02384 N-6 DNA Methylase TREPR_2300 PF00072 Response regulator receiver domain TREPR_2300 PF00196 Bacterial regulatory proteins, luxR family TREPR_2301 PF09308 LuxQ, periplasmic TREPR_2301 PF00512 His Kinase A (phospho-acceptor) domain TREPR_2301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2301 PF00072 Response regulator receiver domain TREPR_2306 PF13732 Domain of unknown function (DUF4162) TREPR_2306 PF00005 ABC transporter TREPR_2308 PF04542 Sigma-70 region 2 TREPR_2308 PF08281 Sigma-70, region 4 TREPR_2309 PF00990 Diguanylate cyclase, GGDEF domain TREPR_2309 PF17151 Periplasmic sensor domain TREPR_2311 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TREPR_2311 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TREPR_2312 PF12833 Helix-turn-helix domain TREPR_2312 PF02805 Metal binding domain of Ada TREPR_2316 PF07556 Protein of unknown function (DUF1538) TREPR_2318 PF00753 Metallo-beta-lactamase superfamily TREPR_2318 PF12706 Beta-lactamase superfamily domain TREPR_2320 PF01807 CHC2 zinc finger TREPR_2320 PF08275 DNA primase catalytic core, N-terminal domain TREPR_2321 PF04542 Sigma-70 region 2 TREPR_2321 PF00140 Sigma-70 factor, region 1.2 TREPR_2321 PF04545 Sigma-70, region 4 TREPR_2321 PF03979 Sigma-70 factor, region 1.1 TREPR_2321 PF04539 Sigma-70 region 3 TREPR_2326 PF04085 rod shape-determining protein MreC TREPR_2328 PF03717 Penicillin-binding Protein dimerisation domain TREPR_2328 PF00905 Penicillin binding protein transpeptidase domain TREPR_2329 PF01098 Cell cycle protein TREPR_2332 PF03180 NLPA lipoprotein TREPR_2333 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2334 PF00005 ABC transporter TREPR_2334 PF09383 NIL domain TREPR_2338 PF00158 Sigma-54 interaction domain TREPR_2338 PF13185 GAF domain TREPR_2338 PF02954 Bacterial regulatory protein, Fis family TREPR_2339 PF00575 S1 RNA binding domain TREPR_2340 PF01479 S4 domain TREPR_2340 PF00849 RNA pseudouridylate synthase TREPR_2342 PF02616 Segregation and condensation protein ScpA TREPR_2344 PF00154 recA bacterial DNA recombination protein TREPR_2347 PF00293 NUDIX domain TREPR_2352 PF07516 SecA Wing and Scaffold domain TREPR_2352 PF02810 SEC-C motif TREPR_2352 PF07517 SecA DEAD-like domain TREPR_2352 PF01043 SecA preprotein cross-linking domain TREPR_2356 PF02719 Polysaccharide biosynthesis protein TREPR_2357 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREPR_2359 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TREPR_2359 PF00111 2Fe-2S iron-sulfur cluster binding domain TREPR_2359 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TREPR_2359 PF01799 [2Fe-2S] binding domain TREPR_2362 PF01761 3-dehydroquinate synthase TREPR_2365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TREPR_2365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREPR_2366 PF00266 Aminotransferase class-V TREPR_2367 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TREPR_2367 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TREPR_2367 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TREPR_2368 PF01370 NAD dependent epimerase/dehydratase family TREPR_2369 PF01061 ABC-2 type transporter TREPR_2371 PF00005 ABC transporter TREPR_2371 PF14524 Wzt C-terminal domain TREPR_2373 PF00483 Nucleotidyl transferase TREPR_2374 PF16363 GDP-mannose 4,6 dehydratase TREPR_2375 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TREPR_2376 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TREPR_2377 PF01370 NAD dependent epimerase/dehydratase family TREPR_2378 PF00132 Bacterial transferase hexapeptide (six repeats) TREPR_2380 PF00535 Glycosyl transferase family 2 TREPR_2381 PF00132 Bacterial transferase hexapeptide (six repeats) TREPR_2382 PF00483 Nucleotidyl transferase TREPR_2383 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TREPR_2384 PF04321 RmlD substrate binding domain TREPR_2385 PF16363 GDP-mannose 4,6 dehydratase TREPR_2386 PF01370 NAD dependent epimerase/dehydratase family TREPR_2387 PF16363 GDP-mannose 4,6 dehydratase TREPR_2388 PF01370 NAD dependent epimerase/dehydratase family TREPR_2389 PF00535 Glycosyl transferase family 2 TREPR_2391 PF00535 Glycosyl transferase family 2 TREPR_2392 PF00872 Transposase, Mutator family TREPR_2393 PF00534 Glycosyl transferases group 1 TREPR_2393 PF13439 Glycosyltransferase Family 4 TREPR_2396 PF08544 GHMP kinases C terminal TREPR_2396 PF00288 GHMP kinases N terminal domain TREPR_2397 PF13580 SIS domain TREPR_2399 PF02096 60Kd inner membrane protein TREPR_2401 PF00534 Glycosyl transferases group 1 TREPR_2401 PF13439 Glycosyltransferase Family 4 TREPR_2402 PF02096 60Kd inner membrane protein TREPR_2402 PF14849 YidC periplasmic domain TREPR_2403 PF14849 YidC periplasmic domain TREPR_2403 PF02096 60Kd inner membrane protein TREPR_2404 PF02096 60Kd inner membrane protein TREPR_2404 PF14849 YidC periplasmic domain TREPR_2405 PF13439 Glycosyltransferase Family 4 TREPR_2405 PF00534 Glycosyl transferases group 1 TREPR_2408 PF02397 Bacterial sugar transferase TREPR_2411 PF00730 HhH-GPD superfamily base excision DNA repair protein TREPR_2411 PF00633 Helix-hairpin-helix motif TREPR_2413 PF03755 YicC-like family, N-terminal region TREPR_2413 PF08340 Domain of unknown function (DUF1732) TREPR_2414 PF01225 Mur ligase family, catalytic domain TREPR_2414 PF02875 Mur ligase family, glutamate ligase domain TREPR_2414 PF08245 Mur ligase middle domain TREPR_2415 PF00849 RNA pseudouridylate synthase TREPR_2423 PF16193 AAA C-terminal domain TREPR_2423 PF05496 Holliday junction DNA helicase RuvB P-loop domain TREPR_2423 PF12002 MgsA AAA+ ATPase C terminal TREPR_2427 PF05343 M42 glutamyl aminopeptidase TREPR_2428 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_2428 PF00005 ABC transporter TREPR_2429 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_2429 PF00005 ABC transporter TREPR_2431 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2432 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_2433 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_2434 PF01676 Metalloenzyme superfamily TREPR_2434 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TREPR_2435 PF00211 Adenylate and Guanylate cyclase catalytic domain TREPR_2441 PF13649 Methyltransferase domain TREPR_2442 PF00521 DNA gyrase/topoisomerase IV, subunit A TREPR_2443 PF02447 GntP family permease TREPR_2444 PF03030 Inorganic H+ pyrophosphatase TREPR_2445 PF00204 DNA gyrase B TREPR_2445 PF00986 DNA gyrase B subunit, carboxyl terminus TREPR_2445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2445 PF01751 Toprim domain TREPR_2447 PF00679 Elongation factor G C-terminus TREPR_2447 PF14492 Elongation Factor G, domain II TREPR_2447 PF03144 Elongation factor Tu domain 2 TREPR_2447 PF00009 Elongation factor Tu GTP binding domain TREPR_2447 PF03764 Elongation factor G, domain IV TREPR_2450 PF00285 Citrate synthase, C-terminal domain TREPR_2451 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_2451 PF01627 Hpt domain TREPR_2451 PF00512 His Kinase A (phospho-acceptor) domain TREPR_2451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2451 PF00672 HAMP domain TREPR_2451 PF00072 Response regulator receiver domain TREPR_2452 PF00121 Triosephosphate isomerase TREPR_2453 PF00162 Phosphoglycerate kinase TREPR_2454 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TREPR_2454 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TREPR_2456 PF00072 Response regulator receiver domain TREPR_2457 PF04607 Region found in RelA / SpoT proteins TREPR_2458 PF04620 Flagellar filament outer layer protein Flaa TREPR_2460 PF01520 N-acetylmuramoyl-L-alanine amidase TREPR_2461 PF07478 D-ala D-ala ligase C-terminus TREPR_2461 PF01820 D-ala D-ala ligase N-terminus TREPR_2463 PF02348 Cytidylyltransferase TREPR_2465 PF13186 Iron-sulfur cluster-binding domain TREPR_2466 PF13742 OB-fold nucleic acid binding domain TREPR_2466 PF02601 Exonuclease VII, large subunit TREPR_2467 PF02609 Exonuclease VII small subunit TREPR_2468 PF08676 MutL C terminal dimerisation domain TREPR_2468 PF01119 DNA mismatch repair protein, C-terminal domain TREPR_2469 PF00140 Sigma-70 factor, region 1.2 TREPR_2469 PF03979 Sigma-70 factor, region 1.1 TREPR_2469 PF04542 Sigma-70 region 2 TREPR_2469 PF04545 Sigma-70, region 4 TREPR_2469 PF04539 Sigma-70 region 3 TREPR_2470 PF01476 LysM domain TREPR_2470 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TREPR_2476 PF01790 Prolipoprotein diacylglyceryl transferase TREPR_2482 PF17200 Single Cache domain 2 TREPR_2482 PF07730 Histidine kinase TREPR_2483 PF00072 Response regulator receiver domain TREPR_2483 PF00196 Bacterial regulatory proteins, luxR family TREPR_2485 PF06969 HemN C-terminal domain TREPR_2485 PF04055 Radical SAM superfamily TREPR_2488 PF10502 Signal peptidase, peptidase S26 TREPR_2489 PF03781 Sulfatase-modifying factor enzyme 1 TREPR_2490 PF01668 SmpB protein TREPR_2495 PF01973 Protein of unknown function DUF115 TREPR_2497 PF01261 Xylose isomerase-like TIM barrel TREPR_2498 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREPR_2498 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREPR_2499 PF01875 Memo-like protein TREPR_2504 PF13732 Domain of unknown function (DUF4162) TREPR_2504 PF00005 ABC transporter TREPR_2505 PF00753 Metallo-beta-lactamase superfamily TREPR_2505 PF12706 Beta-lactamase superfamily domain TREPR_2508 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2509 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2511 PF07969 Amidohydrolase family TREPR_2515 PF01145 SPFH domain / Band 7 family TREPR_2516 PF01145 SPFH domain / Band 7 family TREPR_2518 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain TREPR_2518 PF09297 NADH pyrophosphatase zinc ribbon domain TREPR_2518 PF00293 NUDIX domain TREPR_2523 PF00905 Penicillin binding protein transpeptidase domain TREPR_2523 PF00912 Transglycosylase TREPR_2523 PF06832 Penicillin-Binding Protein C-terminus Family TREPR_2524 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain TREPR_2524 PF11974 Bacterial alpha-2-macroglobulin MG3 domain TREPR_2524 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TREPR_2524 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain TREPR_2524 PF07703 Alpha-2-macroglobulin bait region domain TREPR_2524 PF00207 Alpha-2-macroglobulin family TREPR_2524 PF17962 Bacterial macroglobulin domain 6 TREPR_2524 PF01835 MG2 domain TREPR_2528 PF00133 tRNA synthetases class I (I, L, M and V) TREPR_2528 PF08264 Anticodon-binding domain of tRNA TREPR_2532 PF01192 RNA polymerase Rpb6 TREPR_2533 PF03275 UDP-galactopyranose mutase TREPR_2535 PF00535 Glycosyl transferase family 2 TREPR_2537 PF01061 ABC-2 type transporter TREPR_2538 PF00005 ABC transporter TREPR_2538 PF14524 Wzt C-terminal domain TREPR_2540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TREPR_2541 PF08218 Citrate lyase ligase C-terminal domain TREPR_2542 PF08218 Citrate lyase ligase C-terminal domain TREPR_2543 PF00583 Acetyltransferase (GNAT) family TREPR_2543 PF08218 Citrate lyase ligase C-terminal domain TREPR_2544 PF08218 Citrate lyase ligase C-terminal domain TREPR_2544 PF00583 Acetyltransferase (GNAT) family TREPR_2545 PF02397 Bacterial sugar transferase TREPR_2546 PF00005 ABC transporter TREPR_2551 PF00005 ABC transporter TREPR_2555 PF18269 T3SS EscN ATPase C-terminal domain TREPR_2555 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREPR_2555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREPR_2556 PF02108 Flagellar assembly protein FliH TREPR_2557 PF01706 FliG C-terminal domain TREPR_2557 PF14841 FliG middle domain TREPR_2557 PF14842 FliG N-terminal domain TREPR_2558 PF08345 Flagellar M-ring protein C-terminal TREPR_2558 PF01514 Secretory protein of YscJ/FliF family TREPR_2559 PF02049 Flagellar hook-basal body complex protein FliE TREPR_2560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREPR_2560 PF00460 Flagella basal body rod protein TREPR_2561 PF00460 Flagella basal body rod protein TREPR_2562 PF00004 ATPase family associated with various cellular activities (AAA) TREPR_2562 PF07724 AAA domain (Cdc48 subfamily) TREPR_2563 PF00227 Proteasome subunit TREPR_2564 PF00589 Phage integrase family TREPR_2564 PF02899 Phage integrase, N-terminal SAM-like domain TREPR_2565 PF01396 Topoisomerase DNA binding C4 zinc finger TREPR_2565 PF01751 Toprim domain TREPR_2565 PF01131 DNA topoisomerase TREPR_2566 PF02481 DNA recombination-mediator protein A TREPR_2566 PF17782 DprA winged helix domain TREPR_2568 PF02899 Phage integrase, N-terminal SAM-like domain TREPR_2568 PF00589 Phage integrase family TREPR_2569 PF00091 Tubulin/FtsZ family, GTPase domain TREPR_2569 PF12327 FtsZ family, C-terminal domain TREPR_2570 PF02491 SHS2 domain inserted in FTSA TREPR_2572 PF01098 Cell cycle protein TREPR_2573 PF00953 Glycosyl transferase family 4 TREPR_2573 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TREPR_2575 PF01795 MraW methylase family TREPR_2576 PF02381 MraZ protein, putative antitoxin-like TREPR_2579 PF01197 Ribosomal protein L31 TREPR_2580 PF07497 Rho termination factor, RNA-binding domain TREPR_2580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREPR_2580 PF07498 Rho termination factor, N-terminal domain TREPR_2582 PF00005 ABC transporter TREPR_2582 PF17755 UvrA DNA-binding domain TREPR_2582 PF17760 UvrA interaction domain TREPR_2598 PF05698 Bacterial trigger factor protein (TF) C-terminus TREPR_2598 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREPR_2598 PF05697 Bacterial trigger factor protein (TF) TREPR_2599 PF00574 Clp protease TREPR_2600 PF06689 ClpX C4-type zinc finger TREPR_2600 PF10431 C-terminal, D2-small domain, of ClpB protein TREPR_2600 PF07724 AAA domain (Cdc48 subfamily) TREPR_2601 PF05362 Lon protease (S16) C-terminal proteolytic domain TREPR_2601 PF02190 ATP-dependent protease La (LON) substrate-binding domain TREPR_2601 PF00004 ATPase family associated with various cellular activities (AAA) TREPR_2602 PF00534 Glycosyl transferases group 1 TREPR_2602 PF13439 Glycosyltransferase Family 4 TREPR_2603 PF03477 ATP cone domain TREPR_2604 PF03167 Uracil DNA glycosylase superfamily TREPR_2605 PF17764 3′ DNA-binding domain (3′BD) TREPR_2605 PF18074 Primosomal protein N C-terminal domain TREPR_2605 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TREPR_2605 PF00270 DEAD/DEAH box helicase TREPR_2605 PF00271 Helicase conserved C-terminal domain TREPR_2606 PF02082 Transcriptional regulator TREPR_2608 PF13307 Helicase C-terminal domain TREPR_2608 PF06733 DEAD_2 TREPR_2618 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) TREPR_2618 PF07581 The GLUG motif TREPR_2619 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system TREPR_2621 PF05167 Uncharacterised ACR (DUF711) TREPR_2627 PF08543 Phosphomethylpyrimidine kinase TREPR_2630 PF00488 MutS domain V TREPR_2630 PF01624 MutS domain I TREPR_2630 PF05190 MutS family domain IV TREPR_2630 PF05192 MutS domain III TREPR_2630 PF05188 MutS domain II TREPR_2632 PF01103 Surface antigen TREPR_2632 PF07244 Surface antigen variable number repeat TREPR_2634 PF02223 Thymidylate kinase TREPR_2639 PF08482 ATP-dependent helicase C-terminal TREPR_2639 PF00271 Helicase conserved C-terminal domain TREPR_2639 PF04408 Helicase associated domain (HA2) TREPR_2639 PF00270 DEAD/DEAH box helicase TREPR_2640 PF00533 BRCA1 C Terminus (BRCT) domain TREPR_2640 PF01653 NAD-dependent DNA ligase adenylation domain TREPR_2640 PF03120 NAD-dependent DNA ligase OB-fold domain TREPR_2641 PF02390 Putative methyltransferase TREPR_2651 PF04551 GcpE protein TREPR_2654 PF01813 ATP synthase subunit D TREPR_2655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREPR_2655 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREPR_2656 PF02874 ATP synthase alpha/beta family, beta-barrel domain TREPR_2656 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TREPR_2656 PF16886 ATPsynthase alpha/beta subunit N-term extension TREPR_2658 PF01991 ATP synthase (E/31 kDa) subunit TREPR_2660 PF01263 Aldose 1-epimerase TREPR_2661 PF00180 Isocitrate/isopropylmalate dehydrogenase TREPR_2662 PF03781 Sulfatase-modifying factor enzyme 1 TREPR_2666 PF00664 ABC transporter transmembrane region TREPR_2666 PF00005 ABC transporter TREPR_2667 PF00664 ABC transporter transmembrane region TREPR_2667 PF00005 ABC transporter TREPR_2669 PF02545 Maf-like protein TREPR_2670 PF00318 Ribosomal protein S2 TREPR_2671 PF00889 Elongation factor TS TREPR_2672 PF01765 Ribosome recycling factor TREPR_2673 PF01255 Putative undecaprenyl diphosphate synthase TREPR_2675 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TREPR_2675 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TREPR_2675 PF13288 DXP reductoisomerase C-terminal domain TREPR_2677 PF17820 PDZ domain TREPR_2677 PF02163 Peptidase family M50 TREPR_2680 PF03796 DnaB-like helicase C terminal domain TREPR_2680 PF00772 DnaB-like helicase N terminal domain TREPR_2681 PF03948 Ribosomal protein L9, C-terminal domain TREPR_2681 PF01281 Ribosomal protein L9, N-terminal domain TREPR_2683 PF01084 Ribosomal protein S18 TREPR_2684 PF00436 Single-strand binding protein family TREPR_2685 PF01250 Ribosomal protein S6 TREPR_2687 PF13735 tRNA nucleotidyltransferase domain 2 putative TREPR_2687 PF12627 Probable RNA and SrmB- binding site of polymerase A TREPR_2687 PF01743 Poly A polymerase head domain TREPR_2689 PF14622 Ribonuclease-III-like TREPR_2689 PF00035 Double-stranded RNA binding motif TREPR_2690 PF00550 Phosphopantetheine attachment site TREPR_2691 PF01467 Cytidylyltransferase-like TREPR_2696 PF13393 Histidyl-tRNA synthetase TREPR_2697 PF00155 Aminotransferase class I and II TREPR_2704 PF00486 Transcriptional regulatory protein, C terminal TREPR_2704 PF00072 Response regulator receiver domain TREPR_2705 PF00989 PAS fold TREPR_2705 PF18698 Histidine kinase sensor domain TREPR_2705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2705 PF00512 His Kinase A (phospho-acceptor) domain TREPR_2705 PF00672 HAMP domain TREPR_2706 PF01554 MatE TREPR_2707 PF01047 MarR family TREPR_2708 PF02082 Transcriptional regulator TREPR_2710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TREPR_2711 PF00873 AcrB/AcrD/AcrF family TREPR_2723 PF01106 NifU-like domain TREPR_2723 PF04324 BFD-like [2Fe-2S] binding domain TREPR_2723 PF01592 NifU-like N terminal domain TREPR_2724 PF00266 Aminotransferase class-V TREPR_2725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TREPR_2725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TREPR_2725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TREPR_2725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TREPR_2727 PF03180 NLPA lipoprotein TREPR_2728 PF06971 Putative DNA-binding protein N-terminus TREPR_2728 PF02629 CoA binding domain TREPR_2730 PF10672 S-adenosylmethionine-dependent methyltransferase TREPR_2731 PF04552 Sigma-54, DNA binding domain TREPR_2731 PF04963 Sigma-54 factor, core binding domain TREPR_2731 PF00309 Sigma-54 factor, Activator interacting domain (AID) TREPR_2733 PF02743 Cache domain TREPR_2733 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_2733 PF00672 HAMP domain TREPR_2734 PF02384 N-6 DNA Methylase TREPR_2739 PF11867 Domain of unknown function (DUF3387) TREPR_2739 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TREPR_2739 PF18766 SWI2/SNF2 ATPase TREPR_2740 PF13635 Domain of unknown function (DUF4143) TREPR_2740 PF13173 AAA domain TREPR_2742 PF02659 Putative manganese efflux pump TREPR_2744 PF01554 MatE TREPR_2747 PF01869 BadF/BadG/BcrA/BcrD ATPase family TREPR_2749 PF00334 Nucleoside diphosphate kinase TREPR_2750 PF01921 tRNA synthetases class I (K) TREPR_2751 PF00753 Metallo-beta-lactamase superfamily TREPR_2751 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TREPR_2751 PF10996 Beta-Casp domain TREPR_2754 PF17762 HTH domain found in ParB protein TREPR_2754 PF02195 ParB-like nuclease domain TREPR_2755 PF13614 AAA domain TREPR_2757 PF03330 Lytic transglycolase TREPR_2757 PF05036 Sporulation related domain TREPR_2759 PF00166 Chaperonin 10 Kd subunit TREPR_2763 PF13277 YmdB-like protein TREPR_2765 PF01965 DJ-1/PfpI family TREPR_2766 PF00486 Transcriptional regulatory protein, C terminal TREPR_2766 PF00072 Response regulator receiver domain TREPR_2769 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREPR_2769 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TREPR_2775 PF11897 Protein of unknown function (DUF3417) TREPR_2775 PF00343 Carbohydrate phosphorylase TREPR_2791 PF03447 Homoserine dehydrogenase, NAD binding domain TREPR_2791 PF00742 Homoserine dehydrogenase TREPR_2791 PF13840 ACT domain TREPR_2791 PF01842 ACT domain TREPR_2791 PF00696 Amino acid kinase family TREPR_2792 PF00953 Glycosyl transferase family 4 TREPR_2793 PF01022 Bacterial regulatory protein, arsR family TREPR_2794 PF00266 Aminotransferase class-V TREPR_2795 PF02568 Thiamine biosynthesis protein (ThiI) TREPR_2795 PF02926 THUMP domain TREPR_2800 PF01975 Survival protein SurE TREPR_2801 PF08544 GHMP kinases C terminal TREPR_2801 PF10509 Galactokinase galactose-binding signature TREPR_2806 PF01351 Ribonuclease HII TREPR_2807 PF00156 Phosphoribosyl transferase domain TREPR_2811 PF03372 Endonuclease/Exonuclease/phosphatase family TREPR_2812 PF02617 ATP-dependent Clp protease adaptor protein ClpS TREPR_2813 PF00004 ATPase family associated with various cellular activities (AAA) TREPR_2813 PF10431 C-terminal, D2-small domain, of ClpB protein TREPR_2813 PF07724 AAA domain (Cdc48 subfamily) TREPR_2813 PF17871 AAA lid domain TREPR_2813 PF02861 Clp amino terminal domain, pathogenicity island component TREPR_2814 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TREPR_2816 PF02127 Aminopeptidase I zinc metalloprotease (M18) TREPR_2817 PF00749 tRNA synthetases class I (E and Q), catalytic domain TREPR_2819 PF02146 Sir2 family TREPR_2823 PF01554 MatE TREPR_2827 PF17131 Outer membrane lipoprotein-sorting protein TREPR_2838 PF00293 NUDIX domain TREPR_2839 PF00149 Calcineurin-like phosphoesterase TREPR_2839 PF02872 5'-nucleotidase, C-terminal domain TREPR_2845 PF04542 Sigma-70 region 2 TREPR_2845 PF04545 Sigma-70, region 4 TREPR_2845 PF04539 Sigma-70 region 3 TREPR_2847 PF10609 NUBPL iron-transfer P-loop NTPase TREPR_2848 PF00448 SRP54-type protein, GTPase domain TREPR_2849 PF00771 FHIPEP family TREPR_2850 PF01312 FlhB HrpN YscU SpaS Family TREPR_2851 PF01311 Bacterial export proteins, family 1 TREPR_2852 PF01313 Bacterial export proteins, family 3 TREPR_2853 PF00813 FliP family TREPR_2855 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TREPR_2855 PF04509 CheC-like family TREPR_2856 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TREPR_2856 PF02154 Flagellar motor switch protein FliM TREPR_2858 PF03748 Flagellar basal body-associated protein FliL TREPR_2860 PF00691 OmpA family TREPR_2860 PF13677 Membrane MotB of proton-channel complex MotA/MotB TREPR_2861 PF01618 MotA/TolQ/ExbB proton channel family TREPR_2863 PF00460 Flagella basal body rod protein TREPR_2863 PF07559 Flagellar basal body protein FlaE TREPR_2863 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREPR_2864 PF03963 Flagellar hook capping protein - N-terminal region TREPR_2872 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system TREPR_2876 PF04055 Radical SAM superfamily TREPR_2876 PF13186 Iron-sulfur cluster-binding domain TREPR_2877 PF01738 Dienelactone hydrolase family TREPR_2878 PF00994 Probable molybdopterin binding domain TREPR_2878 PF02464 Competence-damaged protein TREPR_2880 PF00682 HMGL-like TREPR_2880 PF08502 LeuA allosteric (dimerisation) domain TREPR_2881 PF00117 Glutamine amidotransferase class-I TREPR_2883 PF02579 Dinitrogenase iron-molybdenum cofactor TREPR_2883 PF04055 Radical SAM superfamily TREPR_2884 PF00148 Nitrogenase component 1 type Oxidoreductase TREPR_2885 PF00148 Nitrogenase component 1 type Oxidoreductase TREPR_2886 PF00148 Nitrogenase component 1 type Oxidoreductase TREPR_2887 PF00148 Nitrogenase component 1 type Oxidoreductase TREPR_2888 PF00543 Nitrogen regulatory protein P-II TREPR_2889 PF00543 Nitrogen regulatory protein P-II TREPR_2890 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREPR_2893 PF01590 GAF domain TREPR_2893 PF00158 Sigma-54 interaction domain TREPR_2893 PF02954 Bacterial regulatory protein, Fis family TREPR_2896 PF02492 CobW/HypB/UreG, nucleotide-binding domain TREPR_2896 PF07683 Cobalamin synthesis protein cobW C-terminal domain TREPR_2900 PF02574 Homocysteine S-methyltransferase TREPR_2900 PF02607 B12 binding domain TREPR_2900 PF02965 Vitamin B12 dependent methionine synthase, activation domain TREPR_2900 PF02310 B12 binding domain TREPR_2900 PF00809 Pterin binding enzyme TREPR_2903 PF00672 HAMP domain TREPR_2903 PF01627 Hpt domain TREPR_2903 PF00072 Response regulator receiver domain TREPR_2903 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_2903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2903 PF00512 His Kinase A (phospho-acceptor) domain TREPR_2905 PF02310 B12 binding domain TREPR_2905 PF02607 B12 binding domain TREPR_2906 PF03459 TOBE domain TREPR_2907 PF03551 Transcriptional regulator PadR-like family TREPR_2907 PF10400 Virulence activator alpha C-term TREPR_2911 PF00704 Glycosyl hydrolases family 18 TREPR_2913 PF03630 Fumble TREPR_2916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2916 PF00072 Response regulator receiver domain TREPR_2916 PF00512 His Kinase A (phospho-acceptor) domain TREPR_2916 PF09308 LuxQ, periplasmic TREPR_2919 PF17854 FtsK alpha domain TREPR_2919 PF09397 Ftsk gamma domain TREPR_2919 PF01580 FtsK/SpoIIIE family TREPR_2920 PF01464 Transglycosylase SLT domain TREPR_2920 PF10145 Phage-related minor tail protein TREPR_2920 PF01551 Peptidase family M23 TREPR_2921 PF01476 LysM domain TREPR_2928 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_2928 PF00672 HAMP domain TREPR_2930 PF00005 ABC transporter TREPR_2930 PF00664 ABC transporter transmembrane region TREPR_2931 PF00664 ABC transporter transmembrane region TREPR_2931 PF00005 ABC transporter TREPR_2933 PF02463 RecF/RecN/SMC N terminal domain TREPR_2934 PF01513 ATP-NAD kinase TREPR_2936 PF01584 CheW-like domain TREPR_2937 PF02075 Crossover junction endodeoxyribonuclease RuvC TREPR_2938 PF01709 Transcriptional regulator TREPR_2941 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_2941 PF00672 HAMP domain TREPR_2941 PF02743 Cache domain TREPR_2946 PF00916 Sulfate permease family TREPR_2946 PF01740 STAS domain TREPR_2947 PF01022 Bacterial regulatory protein, arsR family TREPR_2948 PF00403 Heavy-metal-associated domain TREPR_2950 PF00391 PEP-utilising enzyme, mobile domain TREPR_2950 PF05524 PEP-utilising enzyme, N-terminal TREPR_2950 PF02896 PEP-utilising enzyme, TIM barrel domain TREPR_2951 PF00381 PTS HPr component phosphorylation site TREPR_2952 PF00232 Glycosyl hydrolase family 1 TREPR_2953 PF00149 Calcineurin-like phosphoesterase TREPR_2953 PF02872 5'-nucleotidase, C-terminal domain TREPR_2954 PF02378 Phosphotransferase system, EIIC TREPR_2954 PF00367 phosphotransferase system, EIIB TREPR_2954 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 TREPR_2955 PF00300 Histidine phosphatase superfamily (branch 1) TREPR_2957 PF00874 PRD domain TREPR_2957 PF03123 CAT RNA binding domain TREPR_2961 PF01042 Endoribonuclease L-PSP TREPR_2962 PF05524 PEP-utilising enzyme, N-terminal TREPR_2962 PF00391 PEP-utilising enzyme, mobile domain TREPR_2962 PF02896 PEP-utilising enzyme, TIM barrel domain TREPR_2963 PF00107 Zinc-binding dehydrogenase TREPR_2963 PF08240 Alcohol dehydrogenase GroES-like domain TREPR_2964 PF00294 pfkB family carbohydrate kinase TREPR_2965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREPR_2968 PF02378 Phosphotransferase system, EIIC TREPR_2968 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TREPR_2968 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TREPR_2971 PF01584 CheW-like domain TREPR_2972 PF07194 P2 response regulator binding domain TREPR_2972 PF01627 Hpt domain TREPR_2972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_2972 PF02895 Signal transducing histidine kinase, homodimeric domain TREPR_2972 PF01584 CheW-like domain TREPR_2973 PF00773 RNB domain TREPR_2974 PF00696 Amino acid kinase family TREPR_2974 PF01842 ACT domain TREPR_2975 PF05173 Dihydrodipicolinate reductase, C-terminus TREPR_2975 PF01113 Dihydrodipicolinate reductase, N-terminus TREPR_2976 PF00701 Dihydrodipicolinate synthetase family TREPR_2977 PF01118 Semialdehyde dehydrogenase, NAD binding domain TREPR_2977 PF02774 Semialdehyde dehydrogenase, dimerisation domain TREPR_2981 PF00572 Ribosomal protein L13 TREPR_2982 PF00380 Ribosomal protein S9/S16 TREPR_2983 PF02631 RecX family TREPR_2984 PF00271 Helicase conserved C-terminal domain TREPR_2984 PF00270 DEAD/DEAH box helicase TREPR_2985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TREPR_2985 PF13378 Enolase C-terminal domain-like TREPR_2987 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2988 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_2989 PF13416 Bacterial extracellular solute-binding protein TREPR_2990 PF01614 Bacterial transcriptional regulator TREPR_2990 PF09339 IclR helix-turn-helix domain TREPR_2991 PF01081 KDPG and KHG aldolase TREPR_2992 PF00294 pfkB family carbohydrate kinase TREPR_2993 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREPR_2993 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREPR_2997 PF00679 Elongation factor G C-terminus TREPR_2997 PF03764 Elongation factor G, domain IV TREPR_2997 PF03144 Elongation factor Tu domain 2 TREPR_2997 PF00009 Elongation factor Tu GTP binding domain TREPR_2997 PF14492 Elongation Factor G, domain II TREPR_2999 PF02653 Branched-chain amino acid transport system / permease component TREPR_3000 PF00005 ABC transporter TREPR_3001 PF13407 Periplasmic binding protein domain TREPR_3003 PF13407 Periplasmic binding protein domain TREPR_3004 PF00072 Response regulator receiver domain TREPR_3004 PF00486 Transcriptional regulatory protein, C terminal TREPR_3005 PF00672 HAMP domain TREPR_3005 PF06580 Histidine kinase TREPR_3005 PF02743 Cache domain TREPR_3005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_3007 PF04225 Opacity-associated protein A LysM-like domain TREPR_3007 PF01551 Peptidase family M23 TREPR_3010 PF04468 PSP1 C-terminal conserved region TREPR_3011 PF05958 tRNA (Uracil-5-)-methyltransferase TREPR_3011 PF01938 TRAM domain TREPR_3012 PF00072 Response regulator receiver domain TREPR_3012 PF01339 CheB methylesterase TREPR_3013 PF01739 CheR methyltransferase, SAM binding domain TREPR_3013 PF03705 CheR methyltransferase, all-alpha domain TREPR_3014 PF00117 Glutamine amidotransferase class-I TREPR_3014 PF06418 CTP synthase N-terminus TREPR_3017 PF00005 ABC transporter TREPR_3017 PF12399 Branched-chain amino acid ATP-binding cassette transporter TREPR_3018 PF01554 MatE TREPR_3022 PF01546 Peptidase family M20/M25/M40 TREPR_3023 PF00248 Aldo/keto reductase family TREPR_3026 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_3027 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_3028 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3029 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3029 PF12911 N-terminal TM domain of oligopeptide transport permease C TREPR_3030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_3030 PF00005 ABC transporter TREPR_3031 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_3031 PF00005 ABC transporter TREPR_3032 PF01966 HD domain TREPR_3032 PF00013 KH domain TREPR_3032 PF12072 Domain of unknown function (DUF3552) TREPR_3036 PF08402 TOBE domain TREPR_3036 PF00005 ABC transporter TREPR_3037 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3038 PF04794 YdjC-like protein TREPR_3039 PF13277 YmdB-like protein TREPR_3041 PF08279 HTH domain TREPR_3041 PF03099 Biotin/lipoate A/B protein ligase family TREPR_3041 PF02237 Biotin protein ligase C terminal domain TREPR_3043 PF01926 50S ribosome-binding GTPase TREPR_3043 PF07650 KH domain TREPR_3050 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain TREPR_3050 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain TREPR_3052 PF00202 Aminotransferase class-III TREPR_3053 PF03744 6-carboxyhexanoate--CoA ligase TREPR_3054 PF00155 Aminotransferase class I and II TREPR_3055 PF03600 Citrate transporter TREPR_3056 PF00072 Response regulator receiver domain TREPR_3057 PF00072 Response regulator receiver domain TREPR_3057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_3057 PF00512 His Kinase A (phospho-acceptor) domain TREPR_3057 PF09308 LuxQ, periplasmic TREPR_3058 PF01966 HD domain TREPR_3059 PF02743 Cache domain TREPR_3059 PF00672 HAMP domain TREPR_3059 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TREPR_3060 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TREPR_3060 PF00476 DNA polymerase family A TREPR_3060 PF01612 3'-5' exonuclease TREPR_3060 PF01367 5'-3' exonuclease, C-terminal SAM fold TREPR_3064 PF00809 Pterin binding enzyme TREPR_3065 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit TREPR_3065 PF04060 Putative Fe-S cluster TREPR_3066 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit TREPR_3067 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain TREPR_3067 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit TREPR_3068 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TREPR_3069 PF03063 Prismane/CO dehydrogenase family TREPR_3080 PF00586 AIR synthase related protein, N-terminal domain TREPR_3080 PF02769 AIR synthase related protein, C-terminal domain TREPR_3081 PF01206 Sulfurtransferase TusA TREPR_3082 PF00266 Aminotransferase class-V TREPR_3083 PF03144 Elongation factor Tu domain 2 TREPR_3083 PF09106 Elongation factor SelB, winged helix TREPR_3083 PF09107 Elongation factor SelB, winged helix TREPR_3083 PF00009 Elongation factor Tu GTP binding domain TREPR_3083 PF09105 Elongation factor SelB, winged helix TREPR_3084 PF03841 L-seryl-tRNA selenium transferase TREPR_3084 PF12390 Selenocysteine synthase N terminal TREPR_3087 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3088 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREPR_3089 PF00005 ABC transporter TREPR_3090 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component TREPR_3091 PF01869 BadF/BadG/BcrA/BcrD ATPase family TREPR_3093 PF12804 MobA-like NTP transferase domain TREPR_3094 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TREPR_3094 PF02256 Iron hydrogenase small subunit TREPR_3094 PF00037 4Fe-4S binding domain TREPR_3094 PF02906 Iron only hydrogenase large subunit, C-terminal domain TREPR_3095 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREPR_3095 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TREPR_3095 PF13247 4Fe-4S dicluster domain TREPR_3097 PF02634 FdhD/NarQ family TREPR_3098 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREPR_3098 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TREPR_3098 PF13247 4Fe-4S dicluster domain TREPR_3099 PF01568 Molydopterin dinucleotide binding domain TREPR_3099 PF00384 Molybdopterin oxidoreductase TREPR_3099 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TREPR_3102 PF00994 Probable molybdopterin binding domain TREPR_3102 PF03453 MoeA N-terminal region (domain I and II) TREPR_3102 PF03454 MoeA C-terminal region (domain IV) TREPR_3110 PF08719 Domain of unknown function (DUF1768) TREPR_3112 PF01726 LexA DNA binding domain TREPR_3112 PF00717 Peptidase S24-like TREPR_3115 PF04851 Type III restriction enzyme, res subunit TREPR_3115 PF00271 Helicase conserved C-terminal domain TREPR_3115 PF08463 EcoEI R protein C-terminal TREPR_3115 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) TREPR_3118 PF06250 YhcG PDDEXK nuclease domain TREPR_3118 PF17761 DUF1016 N-terminal domain TREPR_3124 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TREPR_3124 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TREPR_3125 PF04961 Formiminotransferase-cyclodeaminase TREPR_3126 PF01268 Formate--tetrahydrofolate ligase TREPR_3129 PF02361 Cobalt transport protein TREPR_3131 PF12822 ECF transporter, substrate-specific component TREPR_3133 PF02875 Mur ligase family, glutamate ligase domain TREPR_3133 PF08245 Mur ligase middle domain TREPR_3134 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TREPR_3134 PF02154 Flagellar motor switch protein FliM TREPR_3137 PF01121 Dephospho-CoA kinase TREPR_3139 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_3147 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TREPR_3147 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TREPR_3151 PF18415 Histidine kinase receptor ArcB trans-membrane domain TREPR_3151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_3151 PF00072 Response regulator receiver domain TREPR_3151 PF00512 His Kinase A (phospho-acceptor) domain TREPR_3151 PF00989 PAS fold TREPR_3151 PF01627 Hpt domain TREPR_3153 PF00886 Ribosomal protein S16 TREPR_3155 PF01782 RimM N-terminal domain TREPR_3155 PF05239 PRC-barrel domain TREPR_3156 PF01746 tRNA (Guanine-1)-methyltransferase TREPR_3157 PF01245 Ribosomal protein L19 TREPR_3159 PF01312 FlhB HrpN YscU SpaS Family TREPR_3161 PF02021 Uncharacterised protein family UPF0102 TREPR_3163 PF00072 Response regulator receiver domain TREPR_3163 PF00990 Diguanylate cyclase, GGDEF domain TREPR_3164 PF00072 Response regulator receiver domain TREPR_3164 PF00196 Bacterial regulatory proteins, luxR family TREPR_3165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_3165 PF05231 MASE1 TREPR_3165 PF07730 Histidine kinase TREPR_3166 PF01048 Phosphorylase superfamily TREPR_3176 PF02664 S-Ribosylhomocysteinase (LuxS) TREPR_3177 PF01070 FMN-dependent dehydrogenase TREPR_3178 PF02867 Ribonucleotide reductase, barrel domain TREPR_3178 PF08471 Class II vitamin B12-dependent ribonucleotide reductase TREPR_3183 PF01297 Zinc-uptake complex component A periplasmic TREPR_3184 PF00005 ABC transporter TREPR_3185 PF00950 ABC 3 transport family TREPR_3188 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TREPR_3188 PF01926 50S ribosome-binding GTPase TREPR_3189 PF02896 PEP-utilising enzyme, TIM barrel domain TREPR_3189 PF00391 PEP-utilising enzyme, mobile domain TREPR_3189 PF05524 PEP-utilising enzyme, N-terminal TREPR_3192 PF01578 Cytochrome C assembly protein TREPR_3194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_3194 PF00512 His Kinase A (phospho-acceptor) domain TREPR_3194 PF01627 Hpt domain TREPR_3194 PF00672 HAMP domain TREPR_3194 PF00072 Response regulator receiver domain TREPR_3194 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TREPR_3196 PF00183 Hsp90 protein TREPR_3200 PF06745 KaiC TREPR_3200 PF18073 Rubredoxin metal binding domain TREPR_3203 PF04073 Aminoacyl-tRNA editing domain TREPR_3204 PF00815 Histidinol dehydrogenase TREPR_3205 PF00155 Aminotransferase class I and II TREPR_3206 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TREPR_3206 PF01502 Phosphoribosyl-AMP cyclohydrolase TREPR_3207 PF00977 Histidine biosynthesis protein TREPR_3208 PF00117 Glutamine amidotransferase class-I TREPR_3209 PF00475 Imidazoleglycerol-phosphate dehydratase TREPR_3210 PF08029 HisG, C-terminal domain TREPR_3210 PF01634 ATP phosphoribosyltransferase TREPR_3212 PF00881 Nitroreductase family TREPR_3215 PF02540 NAD synthase TREPR_3216 PF01969 Protein of unknown function DUF111 TREPR_3217 PF00731 AIR carboxylase TREPR_3219 PF01547 Bacterial extracellular solute-binding protein TREPR_3220 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3221 PF00005 ABC transporter TREPR_3221 PF08402 TOBE domain TREPR_3226 PF00793 DAHP synthetase I family TREPR_3226 PF18152 DAHP synthase ferredoxin-like domain TREPR_3228 PF07690 Major Facilitator Superfamily TREPR_3229 PF08264 Anticodon-binding domain of tRNA TREPR_3229 PF00133 tRNA synthetases class I (I, L, M and V) TREPR_3229 PF13603 Leucyl-tRNA synthetase, Domain 2 TREPR_3229 PF09334 tRNA synthetases class I (M) TREPR_3233 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system TREPR_3236 PF00011 Hsp20/alpha crystallin family TREPR_3239 PF03788 LrgA family TREPR_3240 PF04172 LrgB-like family TREPR_3241 PF02386 Cation transport protein TREPR_3242 PF02080 TrkA-C domain TREPR_3242 PF02254 TrkA-N domain TREPR_3249 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system TREPR_3255 PF01176 Translation initiation factor 1A / IF-1 TREPR_3256 PF01713 Smr domain TREPR_3256 PF00488 MutS domain V TREPR_3261 PF00092 von Willebrand factor type A domain TREPR_3263 PF01882 Protein of unknown function DUF58 TREPR_3264 PF17863 AAA lid domain TREPR_3264 PF07726 ATPase family associated with various cellular activities (AAA) TREPR_3266 PF00005 ABC transporter TREPR_3267 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_3267 PF00005 ABC transporter TREPR_3268 PF12911 N-terminal TM domain of oligopeptide transport permease C TREPR_3268 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3269 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_3271 PF00005 ABC transporter TREPR_3272 PF01032 FecCD transport family TREPR_3275 PF00005 ABC transporter TREPR_3276 PF01032 FecCD transport family TREPR_3278 PF08241 Methyltransferase domain TREPR_3281 PF05958 tRNA (Uracil-5-)-methyltransferase TREPR_3281 PF01938 TRAM domain TREPR_3284 PF03466 LysR substrate binding domain TREPR_3284 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREPR_3287 PF00037 4Fe-4S binding domain TREPR_3287 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREPR_3287 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TREPR_3288 PF02256 Iron hydrogenase small subunit TREPR_3288 PF00037 4Fe-4S binding domain TREPR_3288 PF02906 Iron only hydrogenase large subunit, C-terminal domain TREPR_3288 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TREPR_3289 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREPR_3289 PF14579 Helix-hairpin-helix motif TREPR_3289 PF02811 PHP domain TREPR_3289 PF01336 OB-fold nucleic acid binding domain TREPR_3289 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREPR_3294 PF00005 ABC transporter TREPR_3295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_3295 PF00005 ABC transporter TREPR_3297 PF00171 Aldehyde dehydrogenase family TREPR_3297 PF00465 Iron-containing alcohol dehydrogenase TREPR_3300 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TREPR_3300 PF02906 Iron only hydrogenase large subunit, C-terminal domain TREPR_3300 PF00037 4Fe-4S binding domain TREPR_3300 PF02256 Iron hydrogenase small subunit TREPR_3301 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREPR_3301 PF00037 4Fe-4S binding domain TREPR_3301 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TREPR_3303 PF00255 Glutathione peroxidase TREPR_3305 PF04607 Region found in RelA / SpoT proteins TREPR_3308 PF00226 DnaJ domain TREPR_3308 PF01556 DnaJ C terminal domain TREPR_3308 PF00684 DnaJ central domain TREPR_3312 PF03466 LysR substrate binding domain TREPR_3312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREPR_3313 PF04303 PrpF protein TREPR_3314 PF06857 Malonate decarboxylase delta subunit (MdcD) TREPR_3315 PF03328 HpcH/HpaI aldolase/citrate lyase family TREPR_3316 PF04223 Citrate lyase, alpha subunit (CitF) TREPR_3317 PF00694 Aconitase C-terminal domain TREPR_3317 PF00330 Aconitase family (aconitate hydratase) TREPR_3319 PF09587 Bacterial capsule synthesis protein PGA_cap TREPR_3321 PF01381 Helix-turn-helix TREPR_3325 PF03009 Glycerophosphoryl diester phosphodiesterase family TREPR_3326 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3327 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3328 PF13416 Bacterial extracellular solute-binding protein TREPR_3329 PF02615 Malate/L-lactate dehydrogenase TREPR_3330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREPR_3330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREPR_3332 PF02774 Semialdehyde dehydrogenase, dimerisation domain TREPR_3332 PF01118 Semialdehyde dehydrogenase, NAD binding domain TREPR_3333 PF00696 Amino acid kinase family TREPR_3334 PF00202 Aminotransferase class-III TREPR_3335 PF03358 NADPH-dependent FMN reductase TREPR_3337 PF00005 ABC transporter TREPR_3338 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3340 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3343 PF00005 ABC transporter TREPR_3344 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3345 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREPR_3346 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3347 PF00072 Response regulator receiver domain TREPR_3347 PF00196 Bacterial regulatory proteins, luxR family TREPR_3348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_3348 PF07730 Histidine kinase TREPR_3349 PF07687 Peptidase dimerisation domain TREPR_3349 PF01546 Peptidase family M20/M25/M40 TREPR_3350 PF00764 Arginosuccinate synthase TREPR_3356 PF01850 PIN domain TREPR_3357 PF00206 Lyase TREPR_3357 PF14698 Argininosuccinate lyase C-terminal TREPR_3358 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TREPR_3359 PF01979 Amidohydrolase family TREPR_3360 PF00753 Metallo-beta-lactamase superfamily TREPR_3360 PF01613 Flavin reductase like domain TREPR_3361 PF00072 Response regulator receiver domain TREPR_3362 PF01207 Dihydrouridine synthase (Dus) TREPR_3365 PF00248 Aldo/keto reductase family TREPR_3367 PF04002 RadC-like JAB domain TREPR_3374 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TREPR_3374 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TREPR_3378 PF00691 OmpA family TREPR_3381 PF02938 GAD domain TREPR_3381 PF00152 tRNA synthetases class II (D, K and N) TREPR_3381 PF01336 OB-fold nucleic acid binding domain TREPR_3383 PF02417 Chromate transporter TREPR_3389 PF01063 Amino-transferase class IV TREPR_3399 PF14492 Elongation Factor G, domain II TREPR_3399 PF00679 Elongation factor G C-terminus TREPR_3399 PF00009 Elongation factor Tu GTP binding domain TREPR_3399 PF03144 Elongation factor Tu domain 2 TREPR_3399 PF06421 GTP-binding protein LepA C-terminus TREPR_3402 PF02310 B12 binding domain TREPR_3403 PF12833 Helix-turn-helix domain TREPR_3403 PF01497 Periplasmic binding protein TREPR_3404 PF01497 Periplasmic binding protein TREPR_3404 PF12833 Helix-turn-helix domain TREPR_3405 PF00196 Bacterial regulatory proteins, luxR family TREPR_3405 PF00072 Response regulator receiver domain TREPR_3406 PF00072 Response regulator receiver domain TREPR_3406 PF00196 Bacterial regulatory proteins, luxR family TREPR_3411 PF00211 Adenylate and Guanylate cyclase catalytic domain TREPR_3416 PF01791 DeoC/LacD family aldolase TREPR_3417 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system TREPR_3421 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TREPR_3421 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase TREPR_3421 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II TREPR_3429 PF03928 Haem-degrading TREPR_3430 PF17158 Membrane-associated sensor, integral membrane domain TREPR_3430 PF00990 Diguanylate cyclase, GGDEF domain TREPR_3432 PF00156 Phosphoribosyl transferase domain TREPR_3433 PF17954 Quercetinase C-terminal cupin domain TREPR_3433 PF02678 Pirin TREPR_3434 PF00877 NlpC/P60 family TREPR_3443 PF00750 tRNA synthetases class I (R) TREPR_3443 PF05746 DALR anticodon binding domain TREPR_3443 PF03485 Arginyl tRNA synthetase N terminal domain TREPR_3444 PF01554 MatE TREPR_3446 PF00535 Glycosyl transferase family 2 TREPR_3448 PF00829 Ribosomal prokaryotic L21 protein TREPR_3450 PF01016 Ribosomal L27 protein TREPR_3451 PF01018 GTP1/OBG TREPR_3451 PF01926 50S ribosome-binding GTPase TREPR_3452 PF01467 Cytidylyltransferase-like TREPR_3458 PF00474 Sodium:solute symporter family TREPR_3460 PF00248 Aldo/keto reductase family TREPR_3463 PF02086 D12 class N6 adenine-specific DNA methyltransferase TREPR_3465 PF03063 Prismane/CO dehydrogenase family TREPR_3466 PF01645 Conserved region in glutamate synthase TREPR_3466 PF01493 GXGXG motif TREPR_3466 PF00310 Glutamine amidotransferases class-II TREPR_3466 PF04898 Glutamate synthase central domain TREPR_3467 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TREPR_3467 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREPR_3468 PF03023 Lipid II flippase MurJ TREPR_3469 PF00579 tRNA synthetases class I (W and Y) TREPR_3479 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREPR_3479 PF00460 Flagella basal body rod protein TREPR_3480 PF00460 Flagella basal body rod protein TREPR_3480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TREPR_3485 PF00398 Ribosomal RNA adenine dimethylase TREPR_3486 PF01168 Alanine racemase, N-terminal domain TREPR_3488 PF00849 RNA pseudouridylate synthase TREPR_3490 PF02824 TGS domain TREPR_3490 PF03129 Anticodon binding domain TREPR_3490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TREPR_3490 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TREPR_3491 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain TREPR_3491 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TREPR_3491 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TREPR_3492 PF00857 Isochorismatase family TREPR_3493 PF00892 EamA-like transporter family TREPR_3494 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TREPR_3499 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B TREPR_3501 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain TREPR_3501 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain TREPR_3502 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TREPR_3502 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TREPR_3504 PF00512 His Kinase A (phospho-acceptor) domain TREPR_3504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TREPR_3504 PF00989 PAS fold TREPR_3504 PF00072 Response regulator receiver domain TREPR_3504 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREPR_3504 PF01627 Hpt domain TREPR_3505 PF00072 Response regulator receiver domain TREPR_3506 PF09383 NIL domain TREPR_3506 PF00005 ABC transporter TREPR_3507 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3508 PF00085 Thioredoxin TREPR_3511 PF00158 Sigma-54 interaction domain TREPR_3511 PF02954 Bacterial regulatory protein, Fis family TREPR_3511 PF01590 GAF domain TREPR_3512 PF00909 Ammonium Transporter Family TREPR_3513 PF00543 Nitrogen regulatory protein P-II TREPR_3518 PF00072 Response regulator receiver domain TREPR_3518 PF00196 Bacterial regulatory proteins, luxR family TREPR_3523 PF17200 Single Cache domain 2 TREPR_3523 PF07730 Histidine kinase TREPR_3525 PF12437 Glutamine synthetase type III N terminal TREPR_3525 PF18318 Glutamine synthetase C-terminal domain TREPR_3525 PF00120 Glutamine synthetase, catalytic domain TREPR_3527 PF01026 TatD related DNase TREPR_3530 PF00149 Calcineurin-like phosphoesterase TREPR_3530 PF02872 5'-nucleotidase, C-terminal domain TREPR_3531 PF02608 ABC transporter substrate-binding protein PnrA-like TREPR_3535 PF00892 EamA-like transporter family TREPR_3537 PF04945 YHS domain TREPR_3541 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TREPR_3542 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3543 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_3543 PF00005 ABC transporter TREPR_3545 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TREPR_3546 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_3551 PF00365 Phosphofructokinase TREPR_3554 PF03880 DbpA RNA binding domain TREPR_3562 PF00753 Metallo-beta-lactamase superfamily TREPR_3563 PF02690 Na+/Pi-cotransporter TREPR_3564 PF01235 Sodium:alanine symporter family TREPR_3565 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TREPR_3565 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TREPR_3566 PF01037 Lrp/AsnC ligand binding domain TREPR_3567 PF03466 LysR substrate binding domain TREPR_3567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TREPR_3569 PF00565 Staphylococcal nuclease homologue TREPR_3569 PF00149 Calcineurin-like phosphoesterase TREPR_3569 PF00746 LPXTG cell wall anchor motif TREPR_3569 PF02872 5'-nucleotidase, C-terminal domain TREPR_3572 PF01554 MatE TREPR_3574 PF13173 AAA domain TREPR_3574 PF13635 Domain of unknown function (DUF4143) TREPR_3576 PF00579 tRNA synthetases class I (W and Y) TREPR_3577 PF12683 Protein of unknown function (DUF3798) TREPR_3578 PF12683 Protein of unknown function (DUF3798) TREPR_3579 PF00005 ABC transporter TREPR_3589 PF00196 Bacterial regulatory proteins, luxR family TREPR_3589 PF00072 Response regulator receiver domain TREPR_3591 PF00211 Adenylate and Guanylate cyclase catalytic domain TREPR_3593 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TREPR_3594 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TREPR_3594 PF00037 4Fe-4S binding domain TREPR_3594 PF02256 Iron hydrogenase small subunit TREPR_3594 PF02906 Iron only hydrogenase large subunit, C-terminal domain TREPR_3595 PF00037 4Fe-4S binding domain TREPR_3595 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TREPR_3595 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TREPR_3599 PF00294 pfkB family carbohydrate kinase TREPR_3600 PF00132 Bacterial transferase hexapeptide (six repeats) TREPR_3601 PF01734 Patatin-like phospholipase TREPR_3602 PF08240 Alcohol dehydrogenase GroES-like domain TREPR_3602 PF00107 Zinc-binding dehydrogenase TREPR_3603 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TREPR_3603 PF07685 CobB/CobQ-like glutamine amidotransferase domain TREPR_3605 PF01475 Ferric uptake regulator family TREPR_3606 PF02915 Rubrerythrin TREPR_3612 PF04545 Sigma-70, region 4 TREPR_3612 PF03979 Sigma-70 factor, region 1.1 TREPR_3612 PF00140 Sigma-70 factor, region 1.2 TREPR_3612 PF04542 Sigma-70 region 2 TREPR_3612 PF04539 Sigma-70 region 3 TREPR_3613 PF00873 AcrB/AcrD/AcrF family TREPR_3614 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TREPR_3615 PF08139 Prokaryotic membrane lipoprotein lipid attachment site TREPR_3615 PF02321 Outer membrane efflux protein TREPR_3617 PF00005 ABC transporter TREPR_3623 PF00929 Exonuclease TREPR_3623 PF02811 PHP domain TREPR_3623 PF14579 Helix-hairpin-helix motif TREPR_3623 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREPR_3623 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREPR_3623 PF11490 DNA polymerase III polC-type N-terminus II TREPR_3629 PF18766 SWI2/SNF2 ATPase TREPR_3629 PF12008 Type I restriction and modification enzyme - subunit R C terminal TREPR_3629 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TREPR_3630 PF02384 N-6 DNA Methylase TREPR_3630 PF12161 HsdM N-terminal domain TREPR_3637 PF01425 Amidase TREPR_3638 PF02637 GatB domain TREPR_3638 PF02934 GatB/GatE catalytic domain TREPR_3639 PF00152 tRNA synthetases class II (D, K and N) TREPR_3639 PF01336 OB-fold nucleic acid binding domain TREPR_3640 PF07670 Nucleoside recognition TREPR_3642 PF16314 Domain of unknown function (DUF4954) TREPR_3654 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TREPR_3654 PF14572 Phosphoribosyl synthetase-associated domain TREPR_3661 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3662 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3662 PF12911 N-terminal TM domain of oligopeptide transport permease C TREPR_3663 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_3663 PF00005 ABC transporter TREPR_3664 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TREPR_3664 PF00005 ABC transporter TREPR_3667 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TREPR_3668 PF04055 Radical SAM superfamily TREPR_3668 PF06968 Biotin and Thiamin Synthesis associated domain TREPR_3672 PF03448 MgtE intracellular N domain TREPR_3672 PF00571 CBS domain TREPR_3672 PF01769 Divalent cation transporter TREPR_3673 PF00206 Lyase TREPR_3673 PF10415 Fumarase C C-terminus TREPR_3676 PF00857 Isochorismatase family TREPR_3691 PF00717 Peptidase S24-like TREPR_3691 PF01726 LexA DNA binding domain TREPR_3700 PF01026 TatD related DNase TREPR_3704 PF00128 Alpha amylase, catalytic domain TREPR_3704 PF02903 Alpha amylase, N-terminal ig-like domain TREPR_3704 PF16657 Maltogenic Amylase, C-terminal domain TREPR_3706 PF08361 MAATS-type transcriptional repressor, C-terminal region TREPR_3706 PF00440 Bacterial regulatory proteins, tetR family TREPR_3713 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_3715 PF02597 ThiS family TREPR_3716 PF00899 ThiF family TREPR_3716 PF00581 Rhodanese-like domain TREPR_3718 PF00266 Aminotransferase class-V TREPR_3719 PF00132 Bacterial transferase hexapeptide (six repeats) TREPR_3720 PF00005 ABC transporter TREPR_3721 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3722 PF00497 Bacterial extracellular solute-binding proteins, family 3 TREPR_3732 PF00862 Sucrose synthase TREPR_3732 PF00534 Glycosyl transferases group 1 TREPR_3733 PF00132 Bacterial transferase hexapeptide (six repeats) TREPR_3739 PF01370 NAD dependent epimerase/dehydratase family TREPR_3742 PF00664 ABC transporter transmembrane region TREPR_3742 PF00005 ABC transporter TREPR_3747 PF00535 Glycosyl transferase family 2 TREPR_3753 PF00291 Pyridoxal-phosphate dependent enzyme TREPR_3756 PF04227 Indigoidine synthase A like protein TREPR_3757 PF00294 pfkB family carbohydrate kinase TREPR_3758 PF04055 Radical SAM superfamily TREPR_3759 PF11230 Protein of unknown function (DUF3029) TREPR_3760 PF02361 Cobalt transport protein TREPR_3761 PF00005 ABC transporter TREPR_3761 PF12558 ATP-binding cassette cobalt transporter TREPR_3762 PF07155 ECF-type riboflavin transporter, S component TREPR_3767 PF07238 PilZ domain TREPR_3771 PF00004 ATPase family associated with various cellular activities (AAA) TREPR_3771 PF05362 Lon protease (S16) C-terminal proteolytic domain TREPR_3771 PF02190 ATP-dependent protease La (LON) substrate-binding domain TREPR_3773 PF00696 Amino acid kinase family TREPR_3773 PF00583 Acetyltransferase (GNAT) family TREPR_3774 PF02843 Phosphoribosylglycinamide synthetase, C domain TREPR_3774 PF02844 Phosphoribosylglycinamide synthetase, N domain TREPR_3774 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TREPR_3777 PF06968 Biotin and Thiamin Synthesis associated domain TREPR_3777 PF04055 Radical SAM superfamily TREPR_3778 PF01808 AICARFT/IMPCHase bienzyme TREPR_3778 PF02142 MGS-like domain TREPR_3780 PF00551 Formyl transferase TREPR_3782 PF00586 AIR synthase related protein, N-terminal domain TREPR_3782 PF02769 AIR synthase related protein, C-terminal domain TREPR_3783 PF01791 DeoC/LacD family aldolase TREPR_3784 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TREPR_3784 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TREPR_3786 PF00156 Phosphoribosyl transferase domain TREPR_3787 PF01259 SAICAR synthetase TREPR_3788 PF00731 AIR carboxylase TREPR_3789 PF03023 Lipid II flippase MurJ TREPR_3792 PF00440 Bacterial regulatory proteins, tetR family TREPR_3792 PF13305 Tetracyclin repressor-like, C-terminal domain TREPR_3794 PF02527 rRNA small subunit methyltransferase G TREPR_3795 PF09371 Tex-like protein N-terminal domain TREPR_3795 PF16921 Tex protein YqgF-like domain TREPR_3795 PF17674 HHH domain TREPR_3795 PF00575 S1 RNA binding domain TREPR_3797 PF12705 PD-(D/E)XK nuclease superfamily TREPR_3800 PF00258 Flavodoxin TREPR_3802 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TREPR_3802 PF01842 ACT domain TREPR_3802 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TREPR_3803 PF00266 Aminotransferase class-V TREPR_3804 PF02629 CoA binding domain TREPR_3804 PF06971 Putative DNA-binding protein N-terminus TREPR_3805 PF00005 ABC transporter TREPR_3805 PF12848 ABC transporter TREPR_3807 PF03006 Haemolysin-III related TREPR_3809 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TREPR_3811 PF02272 DHHA1 domain TREPR_3811 PF01368 DHH family TREPR_3813 PF02811 PHP domain TREPR_3815 PF13545 Crp-like helix-turn-helix domain TREPR_3815 PF00027 Cyclic nucleotide-binding domain TREPR_3817 PF13419 Haloacid dehalogenase-like hydrolase TREPR_3818 PF03979 Sigma-70 factor, region 1.1 TREPR_3818 PF00140 Sigma-70 factor, region 1.2 TREPR_3818 PF04542 Sigma-70 region 2 TREPR_3818 PF04539 Sigma-70 region 3 TREPR_3818 PF04545 Sigma-70, region 4 TREPR_3819 PF17191 RecG wedge domain TREPR_3819 PF00270 DEAD/DEAH box helicase TREPR_3819 PF00271 Helicase conserved C-terminal domain TREPR_3821 PF02811 PHP domain TREPR_3821 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TREPR_3821 PF14579 Helix-hairpin-helix motif TREPR_3821 PF07733 Bacterial DNA polymerase III alpha NTPase domain TREPR_3829 PF10609 NUBPL iron-transfer P-loop NTPase TREPR_3832 PF01546 Peptidase family M20/M25/M40 TREPR_3835 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREPR_3835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TREPR_3836 PF10437 Bacterial lipoate protein ligase C-terminus TREPR_3836 PF03099 Biotin/lipoate A/B protein ligase family TREPR_3837 PF02347 Glycine cleavage system P-protein TREPR_3838 PF02347 Glycine cleavage system P-protein TREPR_3839 PF01597 Glycine cleavage H-protein TREPR_3840 PF01571 Aminomethyltransferase folate-binding domain TREPR_3840 PF08669 Glycine cleavage T-protein C-terminal barrel domain TREPR_3841 PF01790 Prolipoprotein diacylglyceryl transferase TREPR_3843 PF00528 Binding-protein-dependent transport system inner membrane component TREPR_3846 PF01636 Phosphotransferase enzyme family TREPR_3849 PF02511 Thymidylate synthase complementing protein TREPR_3858 PF07992 Pyridine nucleotide-disulphide oxidoreductase TREPR_3866 PF00771 FHIPEP family TREPR_3874 PF00933 Glycosyl hydrolase family 3 N terminal domain TREPR_3874 PF01915 Glycosyl hydrolase family 3 C-terminal domain TREPR_3876 PF13091 PLD-like domain TREPR_3877 PF03104 DNA polymerase family B, exonuclease domain TREPR_3877 PF00136 DNA polymerase family B TREPR_3878 PF00654 Voltage gated chloride channel TREPR_3881 PF06969 HemN C-terminal domain TREPR_3881 PF04055 Radical SAM superfamily TREPR_3882 PF00892 EamA-like transporter family TREPR_3889 PF01757 Acyltransferase family